Query 011650
Match_columns 480
No_of_seqs 338 out of 3128
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02353 probable UDP-glucose 100.0 1E-100 3E-105 797.4 56.9 473 1-473 1-473 (473)
2 KOG2666 UDP-glucose/GDP-mannos 100.0 3E-95 7E-100 685.4 42.5 480 1-480 1-481 (481)
3 COG1004 Ugd Predicted UDP-gluc 100.0 8.4E-95 1.8E-99 711.7 45.1 412 2-453 1-414 (414)
4 COG0677 WecC UDP-N-acetyl-D-ma 100.0 1.1E-94 2.3E-99 706.9 39.7 418 2-467 10-435 (436)
5 PRK15182 Vi polysaccharide bio 100.0 2.6E-82 5.6E-87 655.6 48.2 407 1-453 6-419 (425)
6 TIGR03026 NDP-sugDHase nucleot 100.0 1.8E-79 4E-84 636.8 49.6 406 2-448 1-411 (411)
7 PRK11064 wecC UDP-N-acetyl-D-m 100.0 4.6E-78 9.9E-83 624.3 46.6 394 1-446 3-415 (415)
8 PRK15057 UDP-glucose 6-dehydro 100.0 3.3E-78 7E-83 618.2 43.8 374 2-429 1-376 (388)
9 PF03721 UDPG_MGDP_dh_N: UDP-g 100.0 1.6E-37 3.4E-42 287.0 19.4 182 2-194 1-185 (185)
10 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.2E-30 2.7E-35 252.9 26.4 249 2-300 1-262 (286)
11 PLN02858 fructose-bisphosphate 100.0 4.9E-29 1.1E-33 288.2 40.5 382 2-464 5-443 (1378)
12 PRK11559 garR tartronate semia 100.0 1.1E-27 2.4E-32 238.6 27.3 251 1-301 2-264 (296)
13 PRK15461 NADH-dependent gamma- 100.0 6.3E-28 1.4E-32 240.0 25.3 253 1-300 1-263 (296)
14 TIGR01505 tartro_sem_red 2-hyd 100.0 1.1E-27 2.4E-32 238.0 26.4 248 3-300 1-260 (291)
15 TIGR01692 HIBADH 3-hydroxyisob 100.0 7.4E-27 1.6E-31 231.7 26.1 245 6-300 1-264 (288)
16 PRK15059 tartronate semialdehy 100.0 9.6E-27 2.1E-31 230.7 26.3 247 2-299 1-259 (292)
17 KOG0409 Predicted dehydrogenas 100.0 5.9E-27 1.3E-31 222.9 22.4 241 2-290 36-289 (327)
18 PF03720 UDPG_MGDP_dh_C: UDP-g 99.9 4.6E-27 1E-31 197.8 11.0 106 328-452 1-106 (106)
19 PF00984 UDPG_MGDP_dh: UDP-glu 99.9 5.5E-26 1.2E-30 186.2 12.0 96 209-306 1-96 (96)
20 PRK12490 6-phosphogluconate de 99.9 5.2E-24 1.1E-28 212.3 28.2 267 2-318 1-291 (299)
21 PLN02858 fructose-bisphosphate 99.9 2.7E-24 5.9E-29 248.9 29.0 252 1-300 324-588 (1378)
22 PLN02350 phosphogluconate dehy 99.9 5.9E-24 1.3E-28 222.3 27.0 254 1-297 6-287 (493)
23 PRK09599 6-phosphogluconate de 99.9 2.7E-22 5.9E-27 200.2 28.4 268 2-319 1-293 (301)
24 PRK00094 gpsA NAD(P)H-dependen 99.9 5.9E-23 1.3E-27 207.1 23.4 281 1-315 1-323 (325)
25 TIGR00872 gnd_rel 6-phosphoglu 99.9 7.4E-21 1.6E-25 189.5 27.6 267 2-319 1-291 (298)
26 PTZ00142 6-phosphogluconate de 99.9 8.7E-21 1.9E-25 198.4 24.7 210 1-252 1-219 (470)
27 COG0240 GpsA Glycerol-3-phosph 99.8 1.2E-19 2.6E-24 178.0 21.3 221 1-253 1-240 (329)
28 PF03446 NAD_binding_2: NAD bi 99.8 2.7E-20 5.8E-25 169.2 15.1 153 1-200 1-155 (163)
29 TIGR00873 gnd 6-phosphoglucona 99.8 2.9E-19 6.4E-24 187.0 22.3 206 3-251 1-215 (467)
30 PRK14618 NAD(P)H-dependent gly 99.8 6.1E-19 1.3E-23 178.3 23.0 275 1-315 4-321 (328)
31 PRK06129 3-hydroxyacyl-CoA deh 99.8 1.2E-17 2.6E-22 167.3 25.5 247 1-290 2-265 (308)
32 PRK14619 NAD(P)H-dependent gly 99.8 2.4E-17 5.2E-22 165.1 21.6 252 2-316 5-300 (308)
33 PRK09287 6-phosphogluconate de 99.8 3.3E-17 7.1E-22 170.9 23.3 197 12-251 1-207 (459)
34 PRK12557 H(2)-dependent methyl 99.8 5.5E-17 1.2E-21 163.6 23.8 265 2-304 1-289 (342)
35 PRK12439 NAD(P)H-dependent gly 99.8 6.8E-17 1.5E-21 164.0 22.6 220 1-253 7-246 (341)
36 PRK08229 2-dehydropantoate 2-r 99.8 6.7E-17 1.5E-21 164.2 21.0 262 1-298 2-308 (341)
37 PRK07066 3-hydroxybutyryl-CoA 99.7 1.3E-16 2.8E-21 159.2 19.7 212 1-256 7-225 (321)
38 PRK09260 3-hydroxybutyryl-CoA 99.7 4.7E-17 1E-21 161.5 15.5 212 1-254 1-220 (288)
39 TIGR03376 glycerol3P_DH glycer 99.7 2.9E-16 6.3E-21 158.2 21.4 218 3-253 1-258 (342)
40 PTZ00345 glycerol-3-phosphate 99.7 3.8E-16 8.2E-21 158.4 21.6 219 2-253 12-267 (365)
41 COG1023 Gnd Predicted 6-phosph 99.7 8.6E-16 1.9E-20 141.9 21.5 210 2-259 1-217 (300)
42 PRK07531 bifunctional 3-hydrox 99.7 2.5E-16 5.3E-21 167.4 20.4 208 1-256 4-222 (495)
43 PRK14620 NAD(P)H-dependent gly 99.7 4.5E-15 9.7E-20 150.0 26.9 215 2-248 1-238 (326)
44 PRK08268 3-hydroxy-acyl-CoA de 99.7 1.2E-15 2.7E-20 161.9 21.0 203 2-254 8-225 (507)
45 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 3.1E-15 6.7E-20 158.5 20.9 204 1-254 5-223 (503)
46 PRK12921 2-dehydropantoate 2-r 99.7 1.2E-14 2.6E-19 145.3 23.3 212 2-244 1-234 (305)
47 PRK08507 prephenate dehydrogen 99.7 2.6E-14 5.7E-19 140.9 24.3 201 2-252 1-207 (275)
48 PRK07417 arogenate dehydrogena 99.7 9.2E-15 2E-19 144.4 21.0 187 2-233 1-192 (279)
49 PRK08293 3-hydroxybutyryl-CoA 99.6 1.1E-14 2.4E-19 144.4 20.6 214 1-254 3-224 (287)
50 PRK07530 3-hydroxybutyryl-CoA 99.6 2.4E-14 5.3E-19 142.4 21.3 205 2-254 5-222 (292)
51 PRK06130 3-hydroxybutyryl-CoA 99.6 3.6E-14 7.8E-19 142.4 22.2 211 1-254 4-219 (311)
52 PRK05808 3-hydroxybutyryl-CoA 99.6 2.3E-14 5E-19 141.8 19.7 208 1-254 3-221 (282)
53 PF01210 NAD_Gly3P_dh_N: NAD-d 99.6 2.3E-15 5E-20 135.8 11.1 150 3-179 1-152 (157)
54 PRK06035 3-hydroxyacyl-CoA deh 99.6 3.9E-14 8.5E-19 140.8 20.9 210 2-254 4-224 (291)
55 PRK07819 3-hydroxybutyryl-CoA 99.6 3E-14 6.5E-19 141.0 19.9 204 1-254 5-225 (286)
56 PLN02712 arogenate dehydrogena 99.6 2.5E-12 5.5E-17 140.5 35.6 165 2-211 53-222 (667)
57 PLN02545 3-hydroxybutyryl-CoA 99.6 1.2E-13 2.5E-18 137.7 21.6 207 1-254 4-222 (295)
58 COG1250 FadB 3-hydroxyacyl-CoA 99.6 6.3E-14 1.4E-18 137.9 18.1 206 1-254 3-221 (307)
59 PRK08655 prephenate dehydrogen 99.6 1E-12 2.2E-17 137.5 28.2 202 2-252 1-203 (437)
60 PRK11730 fadB multifunctional 99.5 4.2E-13 9.2E-18 148.3 19.2 205 1-254 313-530 (715)
61 TIGR01724 hmd_rel H2-forming N 99.5 2E-12 4.2E-17 126.2 20.8 250 2-304 1-289 (341)
62 PRK11199 tyrA bifunctional cho 99.5 3.3E-12 7.1E-17 131.1 23.7 224 1-318 98-324 (374)
63 PRK06522 2-dehydropantoate 2-r 99.5 1.6E-12 3.4E-17 129.9 20.0 209 2-244 1-231 (304)
64 TIGR02437 FadB fatty oxidation 99.5 8.7E-13 1.9E-17 145.5 19.6 205 1-254 313-530 (714)
65 TIGR02441 fa_ox_alpha_mit fatt 99.5 1E-12 2.2E-17 145.3 18.7 202 1-251 335-549 (737)
66 TIGR02440 FadJ fatty oxidation 99.5 1.5E-12 3.3E-17 143.5 19.8 204 1-252 304-520 (699)
67 PLN02688 pyrroline-5-carboxyla 99.5 7.7E-12 1.7E-16 122.7 22.3 195 2-253 1-203 (266)
68 PF02737 3HCDH_N: 3-hydroxyacy 99.5 1.4E-13 3E-18 127.0 9.1 169 3-207 1-178 (180)
69 PRK11154 fadJ multifunctional 99.5 1.9E-12 4.1E-17 143.1 19.3 204 1-252 309-525 (708)
70 PRK07502 cyclohexadienyl dehyd 99.4 1.4E-11 3.1E-16 123.4 22.4 167 2-209 7-179 (307)
71 COG0362 Gnd 6-phosphogluconate 99.4 4.7E-12 1E-16 125.1 17.5 207 2-252 4-220 (473)
72 PRK06249 2-dehydropantoate 2-r 99.4 2.5E-11 5.4E-16 122.0 22.8 256 1-290 5-294 (313)
73 PRK07679 pyrroline-5-carboxyla 99.4 2.3E-11 4.9E-16 120.3 20.3 197 1-253 3-208 (279)
74 PRK11880 pyrroline-5-carboxyla 99.4 7.7E-11 1.7E-15 115.7 22.3 197 1-252 2-203 (267)
75 PRK06545 prephenate dehydrogen 99.4 5.4E-11 1.2E-15 121.7 21.2 178 2-219 1-185 (359)
76 PRK08269 3-hydroxybutyryl-CoA 99.4 3E-11 6.5E-16 121.1 18.9 198 12-255 1-219 (314)
77 COG0287 TyrA Prephenate dehydr 99.4 3E-10 6.4E-15 111.4 25.1 186 1-229 3-192 (279)
78 PRK12491 pyrroline-5-carboxyla 99.4 6.4E-11 1.4E-15 116.4 20.2 199 2-252 3-205 (272)
79 PRK06476 pyrroline-5-carboxyla 99.3 1.4E-10 2.9E-15 113.4 19.6 186 2-252 1-194 (258)
80 PLN02256 arogenate dehydrogena 99.3 1E-09 2.2E-14 109.4 23.7 166 1-211 36-206 (304)
81 KOG2304 3-hydroxyacyl-CoA dehy 99.3 1.7E-11 3.8E-16 112.6 9.8 212 1-255 11-236 (298)
82 COG1893 ApbA Ketopantoate redu 99.3 8.2E-10 1.8E-14 110.2 22.7 208 2-242 1-231 (307)
83 PRK07680 late competence prote 99.3 5.6E-10 1.2E-14 110.0 21.1 153 2-206 1-157 (273)
84 PRK14806 bifunctional cyclohex 99.2 4.9E-10 1.1E-14 125.3 21.5 169 2-210 4-178 (735)
85 PLN02712 arogenate dehydrogena 99.2 5.9E-09 1.3E-13 114.2 26.7 164 2-212 370-540 (667)
86 PRK05708 2-dehydropantoate 2-r 99.2 3.9E-10 8.4E-15 112.9 16.0 207 2-243 3-229 (305)
87 PRK08818 prephenate dehydrogen 99.2 5E-09 1.1E-13 106.7 23.5 157 2-219 5-166 (370)
88 KOG2653 6-phosphogluconate deh 99.2 7.7E-10 1.7E-14 107.9 16.0 207 2-252 7-224 (487)
89 PRK06928 pyrroline-5-carboxyla 99.1 2.1E-09 4.5E-14 106.2 18.2 194 1-252 1-206 (277)
90 PF03807 F420_oxidored: NADP o 99.1 2.3E-10 5E-15 94.2 9.0 87 3-125 1-92 (96)
91 COG0345 ProC Pyrroline-5-carbo 99.1 3.6E-09 7.7E-14 102.5 18.4 196 1-252 1-202 (266)
92 PRK07634 pyrroline-5-carboxyla 99.1 8.1E-09 1.7E-13 100.0 21.1 194 2-252 5-207 (245)
93 TIGR01915 npdG NADPH-dependent 99.1 1.5E-08 3.3E-13 96.5 20.6 99 2-127 1-101 (219)
94 PTZ00431 pyrroline carboxylate 99.1 8E-09 1.7E-13 101.0 17.4 191 2-252 4-198 (260)
95 PF02153 PDH: Prephenate dehyd 99.0 6E-08 1.3E-12 94.8 21.9 179 16-234 1-184 (258)
96 TIGR00745 apbA_panE 2-dehydrop 99.0 1.5E-08 3.2E-13 100.6 17.8 201 11-243 1-223 (293)
97 TIGR01763 MalateDH_bact malate 99.0 3.1E-09 6.8E-14 106.2 11.3 120 2-136 2-126 (305)
98 KOG2305 3-hydroxyacyl-CoA dehy 99.0 1E-08 2.2E-13 94.6 13.2 210 2-254 4-224 (313)
99 COG2085 Predicted dinucleotide 99.0 2.1E-08 4.6E-13 92.7 15.4 165 1-210 1-182 (211)
100 PRK05479 ketol-acid reductoiso 98.9 1.1E-07 2.4E-12 95.2 20.1 151 2-200 18-174 (330)
101 PF10727 Rossmann-like: Rossma 98.9 2.2E-09 4.8E-14 92.7 6.9 93 2-129 11-106 (127)
102 PRK12480 D-lactate dehydrogena 98.8 5.8E-08 1.3E-12 98.0 14.5 105 2-144 147-251 (330)
103 PRK06223 malate dehydrogenase; 98.8 6.2E-08 1.3E-12 97.1 13.3 119 1-134 2-125 (307)
104 KOG2711 Glycerol-3-phosphate d 98.8 3.7E-07 8E-12 89.5 16.8 190 2-221 22-229 (372)
105 COG4007 Predicted dehydrogenas 98.8 1.2E-06 2.5E-11 82.6 19.2 248 1-290 1-276 (340)
106 cd05294 LDH-like_MDH_nadp A la 98.7 4.9E-08 1.1E-12 97.8 9.5 120 2-133 1-128 (309)
107 PRK07574 formate dehydrogenase 98.7 2.3E-07 5E-12 95.1 14.3 109 2-144 193-301 (385)
108 PLN03139 formate dehydrogenase 98.7 3.5E-07 7.5E-12 93.8 14.4 109 2-144 200-308 (386)
109 PRK13243 glyoxylate reductase; 98.7 3.3E-07 7.1E-12 92.8 14.1 107 2-144 151-257 (333)
110 PRK08605 D-lactate dehydrogena 98.6 1.6E-07 3.5E-12 95.0 11.0 107 2-144 147-253 (332)
111 TIGR00465 ilvC ketol-acid redu 98.6 6.1E-06 1.3E-10 82.7 20.4 151 2-200 4-160 (314)
112 PRK06436 glycerate dehydrogena 98.6 4E-07 8.7E-12 90.7 11.7 104 2-144 123-226 (303)
113 PRK13403 ketol-acid reductoiso 98.6 3.2E-07 7E-12 90.7 10.4 90 2-128 17-107 (335)
114 cd05292 LDH_2 A subgroup of L- 98.6 1E-06 2.2E-11 88.4 14.2 110 2-133 1-121 (308)
115 cd01065 NAD_bind_Shikimate_DH 98.6 2E-07 4.4E-12 83.4 8.3 111 2-144 20-131 (155)
116 PRK13304 L-aspartate dehydroge 98.6 7.3E-07 1.6E-11 87.4 12.5 70 1-88 1-71 (265)
117 PRK13302 putative L-aspartate 98.5 7.7E-07 1.7E-11 87.5 11.9 114 2-152 7-121 (271)
118 PF00056 Ldh_1_N: lactate/mala 98.5 1.3E-06 2.8E-11 77.3 12.2 119 2-134 1-124 (141)
119 cd01339 LDH-like_MDH L-lactate 98.5 1.4E-06 3E-11 87.1 12.8 114 4-133 1-120 (300)
120 PF02826 2-Hacid_dh_C: D-isome 98.4 1.5E-06 3.3E-11 80.0 11.0 108 2-144 37-144 (178)
121 PF02558 ApbA: Ketopantoate re 98.4 7.9E-07 1.7E-11 79.3 8.7 114 4-141 1-114 (151)
122 COG0111 SerA Phosphoglycerate 98.4 2.8E-06 6.2E-11 85.3 13.6 132 2-175 143-278 (324)
123 PF01408 GFO_IDH_MocA: Oxidore 98.4 3.3E-06 7.1E-11 72.1 11.9 70 2-89 1-73 (120)
124 PRK15469 ghrA bifunctional gly 98.4 1.4E-06 3.1E-11 87.2 10.9 107 2-144 137-243 (312)
125 PRK13581 D-3-phosphoglycerate 98.4 3.4E-06 7.3E-11 90.6 13.9 107 2-144 141-247 (526)
126 TIGR01327 PGDH D-3-phosphoglyc 98.4 4.2E-06 9E-11 89.9 13.9 108 2-144 139-246 (525)
127 cd00300 LDH_like L-lactate deh 98.4 3.8E-06 8.1E-11 83.9 12.7 114 4-134 1-121 (300)
128 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 2.3E-05 5E-10 73.5 16.5 41 2-44 29-69 (200)
129 PRK06444 prephenate dehydrogen 98.3 0.00017 3.7E-09 67.3 21.8 191 2-319 1-193 (197)
130 cd05293 LDH_1 A subgroup of L- 98.3 5.1E-06 1.1E-10 83.3 12.2 118 2-133 4-125 (312)
131 cd05291 HicDH_like L-2-hydroxy 98.3 9.9E-06 2.1E-10 81.2 14.3 117 2-135 1-124 (306)
132 PF14833 NAD_binding_11: NAD-b 98.3 3.2E-06 6.8E-11 72.8 9.3 89 210-300 1-99 (122)
133 TIGR02853 spore_dpaA dipicolin 98.3 4.9E-06 1.1E-10 82.4 10.4 96 2-134 152-247 (287)
134 cd05297 GH4_alpha_glucosidase_ 98.2 1E-05 2.2E-10 84.7 12.4 81 2-90 1-86 (423)
135 PTZ00082 L-lactate dehydrogena 98.2 1.2E-05 2.6E-10 81.0 12.2 116 2-133 7-133 (321)
136 PF07991 IlvN: Acetohydroxy ac 98.2 1.1E-05 2.3E-10 72.0 10.2 89 2-127 5-95 (165)
137 PRK11790 D-3-phosphoglycerate 98.2 2.2E-05 4.8E-10 81.7 13.8 105 2-144 152-256 (409)
138 PLN02928 oxidoreductase family 98.2 2.1E-05 4.6E-10 80.0 13.4 120 2-144 160-279 (347)
139 KOG2380 Prephenate dehydrogena 98.2 3.5E-05 7.5E-10 75.6 14.0 176 3-229 54-238 (480)
140 PRK14194 bifunctional 5,10-met 98.2 6.2E-06 1.3E-10 81.3 8.6 73 2-129 160-233 (301)
141 TIGR00112 proC pyrroline-5-car 98.2 9.6E-05 2.1E-09 71.6 16.5 177 26-252 9-185 (245)
142 PRK08410 2-hydroxyacid dehydro 98.2 3.2E-05 7E-10 77.6 13.6 103 2-143 146-248 (311)
143 cd00650 LDH_MDH_like NAD-depen 98.1 2.2E-05 4.7E-10 77.0 12.0 118 4-136 1-127 (263)
144 PRK15409 bifunctional glyoxyla 98.1 4.4E-05 9.4E-10 77.0 14.3 107 2-144 146-253 (323)
145 PRK15076 alpha-galactosidase; 98.1 2.6E-05 5.6E-10 81.6 12.8 81 1-89 1-86 (431)
146 PRK08306 dipicolinate synthase 98.1 2.1E-05 4.5E-10 78.4 11.4 95 2-133 153-247 (296)
147 PRK00257 erythronate-4-phospha 98.1 1.5E-05 3.2E-10 81.9 10.4 108 2-144 117-224 (381)
148 COG1052 LdhA Lactate dehydroge 98.1 8.2E-05 1.8E-09 74.8 14.7 107 2-144 147-253 (324)
149 cd05290 LDH_3 A subgroup of L- 98.1 3.8E-05 8.2E-10 76.8 12.2 119 3-136 1-127 (307)
150 PTZ00117 malate dehydrogenase; 98.1 3.1E-05 6.8E-10 78.0 11.7 115 2-133 6-127 (319)
151 PLN02602 lactate dehydrogenase 98.1 4.3E-05 9.3E-10 77.7 12.5 119 2-135 38-161 (350)
152 PLN02306 hydroxypyruvate reduc 98.0 0.00013 2.8E-09 75.2 14.3 121 2-143 166-288 (386)
153 COG0039 Mdh Malate/lactate deh 98.0 6.4E-05 1.4E-09 74.6 11.4 120 2-136 1-126 (313)
154 TIGR02371 ala_DH_arch alanine 98.0 6.6E-05 1.4E-09 75.9 11.7 100 2-133 129-228 (325)
155 PRK06141 ornithine cyclodeamin 98.0 5E-05 1.1E-09 76.4 10.7 75 2-89 126-200 (314)
156 PRK00066 ldh L-lactate dehydro 98.0 0.00015 3.3E-09 72.9 13.9 115 2-134 7-128 (315)
157 PRK15438 erythronate-4-phospha 97.9 4.4E-05 9.5E-10 78.2 9.8 108 2-144 117-224 (378)
158 PRK06932 glycerate dehydrogena 97.9 0.00013 2.7E-09 73.4 12.8 103 2-144 148-250 (314)
159 PF01113 DapB_N: Dihydrodipico 97.9 8.5E-05 1.9E-09 64.1 9.9 73 2-86 1-75 (124)
160 PRK14188 bifunctional 5,10-met 97.9 4.5E-05 9.7E-10 75.4 8.4 71 2-128 159-231 (296)
161 PRK06487 glycerate dehydrogena 97.9 0.00017 3.8E-09 72.5 12.7 102 2-144 149-250 (317)
162 PRK00048 dihydrodipicolinate r 97.9 8.1E-05 1.7E-09 72.7 9.8 67 1-87 1-69 (257)
163 COG1748 LYS9 Saccharopine dehy 97.8 9.3E-05 2E-09 75.6 9.9 75 1-89 1-79 (389)
164 TIGR00036 dapB dihydrodipicoli 97.8 0.00011 2.5E-09 72.0 10.2 75 1-88 1-78 (266)
165 PF10100 DUF2338: Uncharacteri 97.8 0.0025 5.3E-08 64.6 19.3 229 1-254 1-283 (429)
166 cd05213 NAD_bind_Glutamyl_tRNA 97.8 0.00014 3E-09 73.1 10.5 71 2-89 179-249 (311)
167 cd01337 MDH_glyoxysomal_mitoch 97.8 0.00017 3.7E-09 72.1 10.8 114 2-134 1-123 (310)
168 PRK13303 L-aspartate dehydroge 97.8 0.00014 2.9E-09 71.4 9.8 70 1-88 1-71 (265)
169 PRK14179 bifunctional 5,10-met 97.8 8E-05 1.7E-09 73.0 7.9 73 2-129 159-232 (284)
170 cd01338 MDH_choloroplast_like 97.7 0.00026 5.7E-09 71.3 11.7 118 2-135 3-135 (322)
171 TIGR00507 aroE shikimate 5-deh 97.7 0.00021 4.6E-09 70.3 10.8 103 2-133 118-220 (270)
172 PRK05442 malate dehydrogenase; 97.7 0.00026 5.6E-09 71.4 11.5 121 2-136 5-138 (326)
173 COG1712 Predicted dinucleotide 97.7 0.00027 5.8E-09 65.9 10.5 67 2-86 1-68 (255)
174 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00055 1.2E-08 61.4 11.7 92 2-132 24-115 (162)
175 PF02826 2-Hacid_dh_C: D-isome 97.7 0.0002 4.4E-09 65.9 9.2 105 319-456 31-138 (178)
176 TIGR00936 ahcY adenosylhomocys 97.7 0.00033 7.1E-09 72.4 11.4 89 2-130 196-285 (406)
177 TIGR01759 MalateDH-SF1 malate 97.6 0.0012 2.5E-08 66.6 14.7 115 2-136 4-137 (323)
178 PRK04148 hypothetical protein; 97.6 0.0004 8.6E-09 60.4 9.7 91 2-124 18-108 (134)
179 PF03446 NAD_binding_2: NAD bi 97.6 0.00014 2.9E-09 66.0 7.1 109 325-466 2-119 (163)
180 PRK07340 ornithine cyclodeamin 97.6 0.00027 5.9E-09 70.7 9.9 100 2-135 126-225 (304)
181 PTZ00075 Adenosylhomocysteinas 97.6 0.00026 5.6E-09 74.1 9.9 89 2-129 255-343 (476)
182 PRK08618 ornithine cyclodeamin 97.6 0.00039 8.4E-09 70.3 10.8 101 2-134 128-228 (325)
183 PRK05476 S-adenosyl-L-homocyst 97.6 0.00046 1E-08 71.7 11.4 88 2-129 213-301 (425)
184 COG0569 TrkA K+ transport syst 97.6 0.00055 1.2E-08 65.4 11.1 41 2-44 1-41 (225)
185 COG0673 MviM Predicted dehydro 97.6 0.00059 1.3E-08 69.1 11.7 73 1-91 3-80 (342)
186 TIGR00518 alaDH alanine dehydr 97.6 0.00047 1E-08 70.9 10.9 105 3-134 169-274 (370)
187 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00059 1.3E-08 70.7 11.5 88 2-128 203-290 (413)
188 PRK11579 putative oxidoreducta 97.6 0.0013 2.9E-08 67.0 14.0 68 2-90 5-76 (346)
189 COG0111 SerA Phosphoglycerate 97.5 0.0003 6.6E-09 70.7 8.8 104 320-456 138-244 (324)
190 PF01488 Shikimate_DH: Shikima 97.5 0.00036 7.9E-09 61.1 8.0 71 2-89 13-86 (135)
191 PRK04207 glyceraldehyde-3-phos 97.5 0.0006 1.3E-08 69.3 10.6 86 1-88 1-88 (341)
192 PRK06407 ornithine cyclodeamin 97.5 0.0012 2.6E-08 65.9 12.6 101 2-133 118-218 (301)
193 smart00859 Semialdhyde_dh Semi 97.5 0.00034 7.3E-09 60.0 7.6 98 3-129 1-101 (122)
194 PRK05225 ketol-acid reductoiso 97.5 0.00017 3.7E-09 74.4 6.5 89 2-127 37-131 (487)
195 TIGR01921 DAP-DH diaminopimela 97.5 0.0011 2.4E-08 66.3 12.0 66 2-89 4-71 (324)
196 PLN02819 lysine-ketoglutarate 97.5 0.00067 1.5E-08 77.5 11.7 75 1-90 569-660 (1042)
197 PF01118 Semialdhyde_dh: Semia 97.5 0.00016 3.5E-09 62.1 5.2 95 3-128 1-98 (121)
198 PTZ00325 malate dehydrogenase; 97.5 0.00068 1.5E-08 68.1 10.4 117 1-136 8-133 (321)
199 PLN00112 malate dehydrogenase 97.5 0.0013 2.8E-08 68.6 12.7 121 2-136 101-234 (444)
200 PLN02494 adenosylhomocysteinas 97.5 0.00065 1.4E-08 71.0 10.3 87 2-128 255-342 (477)
201 TIGR01757 Malate-DH_plant mala 97.5 0.0021 4.5E-08 66.1 14.0 119 3-135 46-177 (387)
202 PRK06823 ornithine cyclodeamin 97.5 0.00086 1.9E-08 67.4 10.8 100 2-133 129-228 (315)
203 PRK05086 malate dehydrogenase; 97.5 0.0013 2.9E-08 65.9 12.1 116 2-136 1-126 (312)
204 KOG0069 Glyoxylate/hydroxypyru 97.5 0.0027 5.9E-08 63.6 14.0 118 2-158 163-284 (336)
205 PF02423 OCD_Mu_crystall: Orni 97.4 0.0014 2.9E-08 66.0 12.1 102 2-133 129-230 (313)
206 PRK06046 alanine dehydrogenase 97.4 0.0016 3.4E-08 66.0 12.1 100 2-133 130-229 (326)
207 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00095 2.1E-08 69.8 10.8 70 2-89 181-251 (417)
208 TIGR01772 MDH_euk_gproteo mala 97.4 0.001 2.3E-08 66.6 10.4 113 3-133 1-121 (312)
209 COG2423 Predicted ornithine cy 97.4 0.0018 3.8E-08 65.1 12.0 122 3-159 132-253 (330)
210 cd00704 MDH Malate dehydrogena 97.4 0.0008 1.7E-08 67.8 9.5 119 3-134 2-132 (323)
211 TIGR02354 thiF_fam2 thiamine b 97.4 0.00064 1.4E-08 63.7 8.2 32 2-35 22-54 (200)
212 cd01336 MDH_cytoplasmic_cytoso 97.4 0.0015 3.2E-08 66.0 11.2 121 2-133 3-133 (325)
213 PRK02318 mannitol-1-phosphate 97.4 0.0012 2.6E-08 68.3 10.7 44 2-47 1-45 (381)
214 PRK07574 formate dehydrogenase 97.3 0.00094 2E-08 68.8 9.6 104 321-456 189-295 (385)
215 PRK08291 ectoine utilization p 97.3 0.0011 2.3E-08 67.2 9.9 76 2-89 133-208 (330)
216 PRK13301 putative L-aspartate 97.3 0.0022 4.8E-08 62.1 11.3 66 2-87 3-71 (267)
217 PRK07589 ornithine cyclodeamin 97.3 0.0017 3.7E-08 66.0 10.8 103 2-134 130-232 (346)
218 TIGR01327 PGDH D-3-phosphoglyc 97.3 0.0015 3.2E-08 70.4 10.9 103 321-456 135-240 (525)
219 PRK10206 putative oxidoreducta 97.3 0.0017 3.7E-08 66.2 10.7 72 1-90 1-76 (344)
220 PRK09496 trkA potassium transp 97.3 0.0007 1.5E-08 71.5 8.1 73 2-88 1-75 (453)
221 PRK00436 argC N-acetyl-gamma-g 97.3 0.001 2.2E-08 67.7 8.9 33 1-34 2-35 (343)
222 PF13460 NAD_binding_10: NADH( 97.3 0.00065 1.4E-08 62.2 6.8 98 4-128 1-99 (183)
223 PLN03139 formate dehydrogenase 97.2 0.0018 3.8E-08 66.7 10.0 104 321-456 196-302 (386)
224 TIGR01771 L-LDH-NAD L-lactate 97.2 0.0027 5.8E-08 63.4 11.0 113 6-134 1-119 (299)
225 TIGR01850 argC N-acetyl-gamma- 97.2 0.0012 2.7E-08 67.2 8.8 97 2-128 1-100 (346)
226 cd05296 GH4_P_beta_glucosidase 97.2 0.0048 1E-07 64.4 13.2 80 2-89 1-86 (419)
227 PLN00106 malate dehydrogenase 97.2 0.0026 5.5E-08 64.1 10.7 114 2-133 19-140 (323)
228 PLN02928 oxidoreductase family 97.2 0.002 4.3E-08 65.7 9.8 116 320-456 155-273 (347)
229 PRK00045 hemA glutamyl-tRNA re 97.2 0.003 6.5E-08 66.2 11.2 70 2-89 183-253 (423)
230 COG2910 Putative NADH-flavin r 97.2 0.0026 5.7E-08 57.7 9.0 72 2-89 1-73 (211)
231 PLN00203 glutamyl-tRNA reducta 97.1 0.001 2.2E-08 71.1 7.6 73 2-89 267-340 (519)
232 TIGR01758 MDH_euk_cyt malate d 97.1 0.0032 7E-08 63.5 10.8 120 3-135 1-132 (324)
233 TIGR00561 pntA NAD(P) transhyd 97.1 0.0031 6.7E-08 67.0 10.9 116 2-132 165-289 (511)
234 PRK13243 glyoxylate reductase; 97.1 0.0034 7.4E-08 63.7 10.6 101 321-456 147-251 (333)
235 PRK15409 bifunctional glyoxyla 97.1 0.0038 8.2E-08 63.0 10.6 102 321-456 142-247 (323)
236 TIGR02992 ectoine_eutC ectoine 97.1 0.0039 8.4E-08 63.1 10.7 75 2-89 130-205 (326)
237 COG0059 IlvC Ketol-acid reduct 97.1 0.0033 7.2E-08 61.4 9.5 91 2-129 19-111 (338)
238 PRK08410 2-hydroxyacid dehydro 97.1 0.0038 8.2E-08 62.7 10.4 99 321-456 142-243 (311)
239 PF02056 Glyco_hydro_4: Family 97.1 0.0027 5.9E-08 58.3 8.5 77 3-87 1-82 (183)
240 PRK12549 shikimate 5-dehydroge 97.1 0.0062 1.3E-07 60.4 11.7 75 2-89 128-203 (284)
241 PLN02968 Probable N-acetyl-gam 97.1 0.0018 4E-08 66.7 8.2 96 1-129 38-136 (381)
242 TIGR01761 thiaz-red thiazoliny 97.0 0.0047 1E-07 62.7 11.0 68 2-89 4-73 (343)
243 PRK00258 aroE shikimate 5-dehy 97.0 0.0034 7.3E-08 62.0 9.3 73 2-90 124-197 (278)
244 PRK15438 erythronate-4-phospha 97.0 0.0068 1.5E-07 62.2 11.7 100 319-456 111-218 (378)
245 PRK13581 D-3-phosphoglycerate 97.0 0.0042 9.1E-08 67.0 10.6 102 321-456 137-241 (526)
246 PRK12480 D-lactate dehydrogena 97.0 0.0034 7.4E-08 63.6 9.3 100 321-456 143-245 (330)
247 TIGR02853 spore_dpaA dipicolin 96.9 0.0052 1.1E-07 60.9 10.1 122 308-463 135-259 (287)
248 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0062 1.4E-07 60.1 10.3 90 2-127 2-95 (285)
249 PRK09310 aroDE bifunctional 3- 96.9 0.0048 1E-07 65.6 10.2 69 2-89 333-401 (477)
250 COG2084 MmsB 3-hydroxyisobutyr 96.9 0.0046 9.9E-08 60.9 9.0 107 325-463 1-117 (286)
251 CHL00194 ycf39 Ycf39; Provisio 96.9 0.0053 1.2E-07 61.6 9.8 73 2-88 1-74 (317)
252 PRK14189 bifunctional 5,10-met 96.8 0.0039 8.4E-08 61.3 8.0 71 2-127 159-230 (285)
253 COG1052 LdhA Lactate dehydroge 96.8 0.0089 1.9E-07 60.2 10.8 103 320-456 142-247 (324)
254 PF03435 Saccharop_dh: Sacchar 96.8 0.0015 3.3E-08 67.6 5.5 124 4-140 1-135 (386)
255 cd05211 NAD_bind_Glu_Leu_Phe_V 96.8 0.071 1.5E-06 50.6 16.3 33 2-36 24-57 (217)
256 PRK06436 glycerate dehydrogena 96.8 0.0056 1.2E-07 61.2 9.2 99 321-456 119-220 (303)
257 PF02254 TrkA_N: TrkA-N domain 96.8 0.0094 2E-07 50.3 9.3 70 4-88 1-72 (116)
258 PLN03075 nicotianamine synthas 96.8 0.011 2.5E-07 58.4 11.1 133 2-157 125-262 (296)
259 PRK13940 glutamyl-tRNA reducta 96.8 0.0036 7.9E-08 65.2 8.0 71 2-89 182-253 (414)
260 PRK00257 erythronate-4-phospha 96.8 0.013 2.8E-07 60.4 11.6 100 319-456 111-218 (381)
261 PTZ00142 6-phosphogluconate de 96.8 0.0098 2.1E-07 63.0 11.0 122 325-472 2-132 (470)
262 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.0043 9.3E-08 56.5 7.1 53 2-89 45-98 (168)
263 PRK06199 ornithine cyclodeamin 96.7 0.0088 1.9E-07 61.6 10.2 76 2-88 156-233 (379)
264 PRK03659 glutathione-regulated 96.7 0.003 6.4E-08 69.3 6.9 73 2-89 401-475 (601)
265 PRK00961 H(2)-dependent methyl 96.7 0.05 1.1E-06 52.4 14.1 108 64-199 127-235 (342)
266 PRK15469 ghrA bifunctional gly 96.7 0.0053 1.2E-07 61.6 8.1 102 321-456 133-237 (312)
267 TIGR01723 hmd_TIGR 5,10-methen 96.7 0.045 9.8E-07 52.8 13.7 108 64-199 125-233 (340)
268 PRK11790 D-3-phosphoglycerate 96.7 0.0086 1.9E-07 62.5 9.9 100 321-456 148-250 (409)
269 COG0373 HemA Glutamyl-tRNA red 96.7 0.012 2.7E-07 60.6 10.8 70 2-89 179-249 (414)
270 COG0002 ArgC Acetylglutamate s 96.7 0.0036 7.9E-08 62.5 6.6 76 1-88 2-80 (349)
271 PLN02306 hydroxypyruvate reduc 96.7 0.01 2.2E-07 61.3 10.1 116 321-456 162-283 (386)
272 PRK13403 ketol-acid reductoiso 96.7 0.0072 1.6E-07 60.3 8.7 93 321-446 13-105 (335)
273 PRK14175 bifunctional 5,10-met 96.7 0.008 1.7E-07 59.2 8.9 53 2-89 159-212 (286)
274 PRK08605 D-lactate dehydrogena 96.7 0.0086 1.9E-07 60.7 9.5 98 321-453 143-244 (332)
275 PLN02350 phosphogluconate dehy 96.7 0.011 2.4E-07 62.8 10.5 120 324-468 6-134 (493)
276 PRK15461 NADH-dependent gamma- 96.7 0.0092 2E-07 59.5 9.4 109 325-465 2-119 (296)
277 PRK06487 glycerate dehydrogena 96.7 0.0075 1.6E-07 60.7 8.8 97 321-456 145-244 (317)
278 PRK14106 murD UDP-N-acetylmura 96.7 0.038 8.2E-07 58.3 14.6 117 2-145 6-134 (450)
279 PRK08306 dipicolinate synthase 96.6 0.021 4.5E-07 57.0 11.7 113 318-464 146-261 (296)
280 PF01262 AlaDh_PNT_C: Alanine 96.6 0.0069 1.5E-07 55.1 7.7 108 2-127 21-139 (168)
281 PRK08300 acetaldehyde dehydrog 96.6 0.013 2.9E-07 58.1 10.1 69 2-89 5-81 (302)
282 cd05298 GH4_GlvA_pagL_like Gly 96.6 0.0091 2E-07 62.6 9.4 77 2-87 1-83 (437)
283 PRK11861 bifunctional prephena 96.6 0.064 1.4E-06 59.7 16.4 131 82-233 1-136 (673)
284 PRK14194 bifunctional 5,10-met 96.6 0.015 3.3E-07 57.6 10.2 79 318-447 153-231 (301)
285 PRK09424 pntA NAD(P) transhydr 96.6 0.022 4.8E-07 60.7 12.0 109 3-128 167-286 (509)
286 PRK00683 murD UDP-N-acetylmura 96.6 0.015 3.3E-07 60.8 10.7 35 2-38 4-38 (418)
287 PRK11559 garR tartronate semia 96.5 0.013 2.9E-07 58.2 9.5 96 325-452 3-101 (296)
288 KOG1495 Lactate dehydrogenase 96.5 0.023 5.1E-07 54.6 10.4 77 2-90 21-100 (332)
289 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.018 3.9E-07 53.5 9.7 74 2-89 29-108 (194)
290 PRK10669 putative cation:proto 96.5 0.0063 1.4E-07 66.2 7.5 71 3-88 419-491 (558)
291 cd05197 GH4_glycoside_hydrolas 96.5 0.012 2.6E-07 61.6 9.3 79 2-88 1-84 (425)
292 PRK12490 6-phosphogluconate de 96.5 0.018 4E-07 57.4 10.1 107 326-465 2-118 (299)
293 PRK09599 6-phosphogluconate de 96.5 0.026 5.7E-07 56.4 11.2 108 326-466 2-119 (301)
294 PF02882 THF_DHG_CYH_C: Tetrah 96.4 0.019 4.2E-07 51.6 9.0 72 2-128 37-109 (160)
295 PRK06932 glycerate dehydrogena 96.4 0.013 2.8E-07 58.9 8.8 97 322-456 145-244 (314)
296 COG1486 CelF Alpha-galactosida 96.4 0.013 2.9E-07 60.5 8.9 78 2-87 4-86 (442)
297 cd01487 E1_ThiF_like E1_ThiF_l 96.4 0.007 1.5E-07 55.5 6.1 40 3-44 1-41 (174)
298 PRK14874 aspartate-semialdehyd 96.4 0.0097 2.1E-07 60.4 7.7 69 1-88 1-73 (334)
299 KOG1502 Flavonol reductase/cin 96.4 0.026 5.6E-07 56.4 10.2 76 2-92 7-91 (327)
300 TIGR00872 gnd_rel 6-phosphoglu 96.3 0.024 5.2E-07 56.6 10.2 111 326-469 2-121 (298)
301 PRK03562 glutathione-regulated 96.3 0.014 3.1E-07 64.2 9.3 72 2-88 401-474 (621)
302 cd05212 NAD_bind_m-THF_DH_Cycl 96.3 0.044 9.5E-07 48.3 10.6 79 318-447 22-100 (140)
303 PRK11908 NAD-dependent epimera 96.3 0.014 3.1E-07 59.2 8.5 41 1-42 1-42 (347)
304 PF03059 NAS: Nicotianamine sy 96.3 0.041 8.8E-07 54.0 11.1 103 3-129 123-232 (276)
305 PRK10792 bifunctional 5,10-met 96.3 0.018 3.8E-07 56.7 8.5 71 2-127 160-231 (285)
306 COG0686 Ald Alanine dehydrogen 96.3 0.03 6.4E-07 55.1 9.8 102 3-134 170-275 (371)
307 TIGR01505 tartro_sem_red 2-hyd 96.3 0.021 4.5E-07 56.7 9.1 107 326-464 1-116 (291)
308 KOG1683 Hydroxyacyl-CoA dehydr 96.2 0.0053 1.2E-07 61.4 4.6 202 12-254 1-208 (380)
309 PRK15059 tartronate semialdehy 96.2 0.021 4.7E-07 56.8 9.0 106 326-464 2-116 (292)
310 PRK14179 bifunctional 5,10-met 96.2 0.03 6.5E-07 55.1 9.8 79 318-447 152-230 (284)
311 KOG0068 D-3-phosphoglycerate d 96.2 0.11 2.4E-06 51.6 13.5 106 2-143 147-252 (406)
312 COG4408 Uncharacterized protei 96.2 0.36 7.8E-06 47.8 16.8 228 1-254 4-285 (431)
313 PRK14191 bifunctional 5,10-met 96.2 0.022 4.9E-07 56.0 8.7 71 2-127 158-229 (285)
314 PRK01710 murD UDP-N-acetylmura 96.2 0.07 1.5E-06 56.6 13.2 33 2-36 15-47 (458)
315 PRK09496 trkA potassium transp 96.2 0.021 4.6E-07 60.2 9.3 42 1-44 231-272 (453)
316 PRK03369 murD UDP-N-acetylmura 96.2 0.089 1.9E-06 56.3 14.0 69 2-89 13-81 (488)
317 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.055 1.2E-06 51.7 11.1 118 2-160 32-161 (227)
318 PRK06718 precorrin-2 dehydroge 96.1 0.042 9.2E-07 51.6 10.1 33 2-36 11-43 (202)
319 PRK12475 thiamine/molybdopteri 96.1 0.02 4.3E-07 58.1 8.2 41 2-44 25-66 (338)
320 KOG3124 Pyrroline-5-carboxylat 96.0 0.085 1.8E-06 50.5 11.4 148 2-199 1-153 (267)
321 cd05213 NAD_bind_Glutamyl_tRNA 96.0 0.21 4.5E-06 50.2 14.7 124 311-465 166-293 (311)
322 COG1063 Tdh Threonine dehydrog 95.9 0.078 1.7E-06 54.2 11.7 41 3-44 171-211 (350)
323 PRK14192 bifunctional 5,10-met 95.9 0.037 8E-07 54.7 9.0 53 2-89 160-213 (283)
324 PRK06719 precorrin-2 dehydroge 95.9 0.049 1.1E-06 49.0 9.0 38 2-43 14-51 (157)
325 TIGR00873 gnd 6-phosphoglucona 95.9 0.05 1.1E-06 57.7 10.3 120 326-472 1-129 (467)
326 PRK08664 aspartate-semialdehyd 95.9 0.043 9.3E-07 56.1 9.6 80 2-88 4-86 (349)
327 PLN02256 arogenate dehydrogena 95.9 0.036 7.7E-07 55.5 8.7 114 301-449 14-129 (304)
328 cd01079 NAD_bind_m-THF_DH NAD 95.9 0.049 1.1E-06 50.4 8.8 89 2-129 63-158 (197)
329 cd05191 NAD_bind_amino_acid_DH 95.8 0.05 1.1E-06 43.5 7.9 32 2-34 24-55 (86)
330 PRK00141 murD UDP-N-acetylmura 95.8 0.084 1.8E-06 56.2 12.0 38 2-41 16-53 (473)
331 PRK05472 redox-sensing transcr 95.8 0.012 2.6E-07 55.7 4.8 69 2-88 85-156 (213)
332 PRK06270 homoserine dehydrogen 95.8 0.077 1.7E-06 54.0 11.0 118 2-143 3-142 (341)
333 PRK01438 murD UDP-N-acetylmura 95.8 0.13 2.9E-06 54.7 13.3 33 2-36 17-49 (480)
334 TIGR01546 GAPDH-II_archae glyc 95.8 0.036 7.8E-07 55.9 8.3 85 4-90 1-87 (333)
335 cd05212 NAD_bind_m-THF_DH_Cycl 95.8 0.068 1.5E-06 47.1 9.0 69 3-126 30-99 (140)
336 PF02882 THF_DHG_CYH_C: Tetrah 95.8 0.075 1.6E-06 47.9 9.5 92 308-451 21-112 (160)
337 COG2344 AT-rich DNA-binding pr 95.7 0.02 4.3E-07 52.2 5.6 69 1-88 84-156 (211)
338 PRK00421 murC UDP-N-acetylmura 95.7 0.062 1.4E-06 57.0 10.4 111 2-145 8-133 (461)
339 TIGR01470 cysG_Nterm siroheme 95.7 0.093 2E-06 49.4 10.2 65 2-87 10-78 (205)
340 PRK14176 bifunctional 5,10-met 95.7 0.053 1.2E-06 53.4 8.8 71 2-127 165-236 (287)
341 PF00670 AdoHcyase_NAD: S-aden 95.6 0.16 3.4E-06 45.8 10.9 126 311-472 10-138 (162)
342 PRK09287 6-phosphogluconate de 95.6 0.062 1.3E-06 56.8 9.7 108 347-471 3-119 (459)
343 PRK14188 bifunctional 5,10-met 95.6 0.078 1.7E-06 52.6 9.9 80 318-448 152-231 (296)
344 TIGR02356 adenyl_thiF thiazole 95.6 0.022 4.8E-07 53.5 5.8 40 2-43 22-62 (202)
345 PF00070 Pyr_redox: Pyridine n 95.6 0.023 4.9E-07 44.7 5.0 33 3-37 1-33 (80)
346 COG1064 AdhP Zn-dependent alco 95.6 0.1 2.2E-06 52.6 10.7 41 2-44 168-208 (339)
347 PRK14183 bifunctional 5,10-met 95.6 0.062 1.3E-06 52.8 8.8 71 2-127 158-229 (281)
348 PRK14190 bifunctional 5,10-met 95.6 0.064 1.4E-06 52.8 8.9 71 2-127 159-230 (284)
349 PRK05671 aspartate-semialdehyd 95.5 0.048 1E-06 55.3 8.2 70 1-88 4-76 (336)
350 PRK06349 homoserine dehydrogen 95.5 0.039 8.4E-07 57.9 7.8 68 2-88 4-82 (426)
351 TIGR01692 HIBADH 3-hydroxyisob 95.5 0.056 1.2E-06 53.6 8.5 98 345-464 7-113 (288)
352 PRK01390 murD UDP-N-acetylmura 95.5 0.15 3.3E-06 54.0 12.3 40 2-43 10-49 (460)
353 PRK08644 thiamine biosynthesis 95.5 0.024 5.1E-07 53.7 5.5 41 2-44 29-70 (212)
354 PRK11863 N-acetyl-gamma-glutam 95.5 0.049 1.1E-06 54.5 7.9 31 1-32 2-33 (313)
355 COG0771 MurD UDP-N-acetylmuram 95.5 0.1 2.2E-06 54.7 10.5 36 1-38 7-42 (448)
356 PRK12409 D-amino acid dehydrog 95.5 0.019 4.1E-07 59.7 5.2 34 1-36 1-34 (410)
357 PF01210 NAD_Gly3P_dh_N: NAD-d 95.4 0.051 1.1E-06 48.8 7.2 105 326-449 1-106 (157)
358 PRK03803 murD UDP-N-acetylmura 95.4 0.2 4.4E-06 52.9 12.8 32 3-36 8-39 (448)
359 TIGR01809 Shik-DH-AROM shikima 95.4 0.043 9.4E-07 54.3 7.1 71 3-89 127-201 (282)
360 PRK14173 bifunctional 5,10-met 95.4 0.077 1.7E-06 52.3 8.7 71 2-127 156-227 (287)
361 PLN02688 pyrroline-5-carboxyla 95.4 0.12 2.6E-06 50.5 10.2 99 326-457 2-105 (266)
362 PRK00711 D-amino acid dehydrog 95.3 0.021 4.6E-07 59.4 5.1 34 2-37 1-34 (416)
363 PRK01581 speE spermidine synth 95.3 1 2.2E-05 46.1 16.7 141 2-158 152-302 (374)
364 PRK02705 murD UDP-N-acetylmura 95.3 0.21 4.5E-06 52.9 12.7 32 3-36 2-33 (459)
365 PTZ00075 Adenosylhomocysteinas 95.3 0.12 2.6E-06 54.5 10.4 100 312-449 242-343 (476)
366 cd00755 YgdL_like Family of ac 95.3 0.22 4.7E-06 47.8 11.4 41 2-44 12-53 (231)
367 TIGR00978 asd_EA aspartate-sem 95.3 0.086 1.9E-06 53.7 9.2 33 2-35 1-35 (341)
368 PRK04663 murD UDP-N-acetylmura 95.2 0.27 5.8E-06 51.8 13.1 36 1-36 7-42 (438)
369 PRK14169 bifunctional 5,10-met 95.2 0.091 2E-06 51.7 8.7 71 2-127 157-228 (282)
370 TIGR03026 NDP-sugDHase nucleot 95.2 0.099 2.1E-06 54.6 9.6 106 326-450 2-123 (411)
371 PRK14170 bifunctional 5,10-met 95.2 0.094 2E-06 51.6 8.7 71 2-127 158-229 (284)
372 PRK02006 murD UDP-N-acetylmura 95.2 0.22 4.7E-06 53.5 12.4 33 2-36 8-40 (498)
373 PRK05479 ketol-acid reductoiso 95.2 0.095 2E-06 52.9 8.9 95 321-448 14-109 (330)
374 PRK08040 putative semialdehyde 95.2 0.052 1.1E-06 55.0 7.1 89 2-127 5-97 (336)
375 PRK14186 bifunctional 5,10-met 95.2 0.095 2.1E-06 51.9 8.7 71 2-127 159-230 (297)
376 TIGR01851 argC_other N-acetyl- 95.2 0.08 1.7E-06 52.8 8.2 57 2-88 2-59 (310)
377 PF05368 NmrA: NmrA-like famil 95.2 0.052 1.1E-06 51.7 6.8 72 4-89 1-75 (233)
378 PRK07417 arogenate dehydrogena 95.1 0.064 1.4E-06 53.0 7.6 93 326-450 2-94 (279)
379 PF02629 CoA_binding: CoA bind 95.1 0.047 1E-06 44.7 5.5 66 2-88 4-72 (96)
380 PLN02383 aspartate semialdehyd 95.1 0.06 1.3E-06 54.8 7.4 67 2-88 8-79 (344)
381 PRK14189 bifunctional 5,10-met 95.1 0.16 3.4E-06 50.2 10.0 79 318-447 152-230 (285)
382 PRK14173 bifunctional 5,10-met 95.1 0.18 3.9E-06 49.7 10.4 80 317-447 148-227 (287)
383 PRK04308 murD UDP-N-acetylmura 95.1 0.28 6.2E-06 51.7 12.8 114 2-145 6-136 (445)
384 PRK09414 glutamate dehydrogena 95.1 0.27 5.9E-06 51.6 12.2 124 2-160 233-369 (445)
385 PRK14177 bifunctional 5,10-met 95.1 0.11 2.4E-06 51.1 8.8 72 2-128 160-232 (284)
386 PF13380 CoA_binding_2: CoA bi 95.1 0.11 2.4E-06 44.1 7.8 97 2-144 1-101 (116)
387 KOG0068 D-3-phosphoglycerate d 95.1 0.11 2.3E-06 51.7 8.5 102 318-453 140-244 (406)
388 PLN02516 methylenetetrahydrofo 95.0 0.11 2.4E-06 51.5 8.6 71 2-127 168-239 (299)
389 PRK02472 murD UDP-N-acetylmura 95.0 0.4 8.8E-06 50.5 13.6 33 2-36 6-38 (447)
390 PF13241 NAD_binding_7: Putati 95.0 0.082 1.8E-06 43.9 6.6 33 2-36 8-40 (103)
391 PRK05868 hypothetical protein; 95.0 0.026 5.6E-07 58.2 4.4 35 1-37 1-35 (372)
392 cd01080 NAD_bind_m-THF_DH_Cycl 95.0 0.19 4E-06 45.8 9.4 82 316-448 36-117 (168)
393 PRK14180 bifunctional 5,10-met 94.9 0.12 2.7E-06 50.8 8.7 71 2-127 159-230 (282)
394 PRK06598 aspartate-semialdehyd 94.9 0.13 2.8E-06 52.6 9.2 71 1-88 1-75 (369)
395 PRK06728 aspartate-semialdehyd 94.9 0.077 1.7E-06 53.9 7.5 88 2-127 6-99 (347)
396 PRK14166 bifunctional 5,10-met 94.9 0.13 2.8E-06 50.6 8.8 71 2-127 158-229 (282)
397 PLN02662 cinnamyl-alcohol dehy 94.9 0.13 2.9E-06 51.3 9.3 35 2-38 5-40 (322)
398 PRK14982 acyl-ACP reductase; P 94.9 0.15 3.3E-06 51.6 9.6 69 2-89 156-226 (340)
399 PRK14170 bifunctional 5,10-met 94.9 0.23 4.9E-06 48.9 10.4 79 318-447 151-229 (284)
400 PRK14169 bifunctional 5,10-met 94.9 0.23 4.9E-06 48.9 10.4 79 318-447 150-228 (282)
401 PRK14172 bifunctional 5,10-met 94.9 0.13 2.9E-06 50.4 8.8 70 2-126 159-229 (278)
402 PRK14178 bifunctional 5,10-met 94.9 0.11 2.3E-06 51.1 8.0 71 2-127 153-224 (279)
403 PRK06392 homoserine dehydrogen 94.9 0.099 2.1E-06 52.8 8.1 21 2-22 1-21 (326)
404 TIGR01087 murD UDP-N-acetylmur 94.9 0.31 6.8E-06 51.2 12.3 33 3-37 1-33 (433)
405 PRK09260 3-hydroxybutyryl-CoA 94.8 0.26 5.6E-06 48.8 11.0 120 325-457 2-127 (288)
406 PRK03806 murD UDP-N-acetylmura 94.8 0.44 9.6E-06 50.1 13.4 32 3-36 8-39 (438)
407 cd05311 NAD_bind_2_malic_enz N 94.8 0.23 5E-06 47.5 10.1 74 2-87 26-106 (226)
408 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.14 2.9E-06 47.4 8.2 106 326-451 2-123 (185)
409 TIGR01082 murC UDP-N-acetylmur 94.8 0.28 6E-06 51.9 11.7 110 3-145 1-125 (448)
410 PRK14193 bifunctional 5,10-met 94.8 0.14 3.1E-06 50.4 8.6 70 2-126 159-231 (284)
411 PRK06753 hypothetical protein; 94.8 0.034 7.4E-07 56.9 4.6 34 2-37 1-34 (373)
412 TIGR03466 HpnA hopanoid-associ 94.7 0.027 6E-07 56.2 3.8 72 2-87 1-73 (328)
413 PRK14190 bifunctional 5,10-met 94.7 0.23 5E-06 49.0 9.9 81 316-447 150-230 (284)
414 PRK14187 bifunctional 5,10-met 94.7 0.15 3.3E-06 50.4 8.7 70 2-126 161-231 (294)
415 PRK14182 bifunctional 5,10-met 94.7 0.29 6.2E-06 48.2 10.5 79 318-447 151-229 (282)
416 cd00757 ThiF_MoeB_HesA_family 94.7 0.06 1.3E-06 51.5 5.8 41 2-44 22-63 (228)
417 PRK00536 speE spermidine synth 94.7 0.67 1.5E-05 45.3 12.9 101 2-131 74-175 (262)
418 PRK14573 bifunctional D-alanyl 94.6 0.32 6.9E-06 55.4 12.4 111 3-144 6-129 (809)
419 TIGR03649 ergot_EASG ergot alk 94.6 0.12 2.5E-06 50.9 7.8 35 3-39 1-36 (285)
420 PRK14171 bifunctional 5,10-met 94.6 0.16 3.5E-06 50.1 8.6 71 2-127 160-231 (288)
421 PLN00141 Tic62-NAD(P)-related 94.6 0.08 1.7E-06 51.1 6.5 40 1-42 17-57 (251)
422 PRK14186 bifunctional 5,10-met 94.6 0.29 6.4E-06 48.5 10.4 80 317-447 151-230 (297)
423 PTZ00188 adrenodoxin reductase 94.6 0.087 1.9E-06 55.8 7.0 86 2-89 40-137 (506)
424 PRK12809 putative oxidoreducta 94.6 0.092 2E-06 58.1 7.7 34 2-37 311-344 (639)
425 PRK07688 thiamine/molybdopteri 94.6 0.071 1.5E-06 54.2 6.2 42 2-45 25-67 (339)
426 PRK08293 3-hydroxybutyryl-CoA 94.6 0.28 6.2E-06 48.5 10.4 129 325-465 4-141 (287)
427 PRK14182 bifunctional 5,10-met 94.5 0.18 4E-06 49.5 8.8 70 2-126 158-228 (282)
428 PRK14175 bifunctional 5,10-met 94.5 0.25 5.4E-06 48.8 9.7 81 318-449 152-232 (286)
429 TIGR01035 hemA glutamyl-tRNA r 94.4 1.2 2.5E-05 46.8 15.2 116 320-466 176-298 (417)
430 COG4091 Predicted homoserine d 94.4 0.77 1.7E-05 46.1 12.7 86 3-89 19-112 (438)
431 PRK07679 pyrroline-5-carboxyla 94.4 0.34 7.3E-06 47.8 10.6 101 324-457 3-109 (279)
432 PLN02897 tetrahydrofolate dehy 94.4 0.17 3.7E-06 51.0 8.4 72 2-128 215-287 (345)
433 KOG2741 Dimeric dihydrodiol de 94.4 0.37 8E-06 48.3 10.6 72 3-91 8-85 (351)
434 cd01075 NAD_bind_Leu_Phe_Val_D 94.4 0.82 1.8E-05 42.8 12.6 106 319-462 23-135 (200)
435 PLN02427 UDP-apiose/xylose syn 94.4 0.046 1E-06 56.4 4.5 41 2-43 15-56 (386)
436 PRK14166 bifunctional 5,10-met 94.4 0.34 7.4E-06 47.7 10.2 79 318-447 151-229 (282)
437 COG0289 DapB Dihydrodipicolina 94.3 0.31 6.8E-06 47.1 9.7 73 1-85 2-76 (266)
438 PRK14172 bifunctional 5,10-met 94.3 0.37 8E-06 47.4 10.3 78 318-446 152-229 (278)
439 PF03807 F420_oxidored: NADP o 94.3 0.15 3.2E-06 41.4 6.5 88 326-447 1-94 (96)
440 TIGR01296 asd_B aspartate-semi 94.3 0.083 1.8E-06 53.7 6.1 66 3-88 1-71 (339)
441 PLN02214 cinnamoyl-CoA reducta 94.3 0.28 6.2E-06 49.8 10.0 36 1-38 10-46 (342)
442 PRK14180 bifunctional 5,10-met 94.3 0.37 8.1E-06 47.4 10.3 81 316-447 150-230 (282)
443 PRK14183 bifunctional 5,10-met 94.2 0.38 8.1E-06 47.3 10.1 79 318-447 151-229 (281)
444 PTZ00245 ubiquitin activating 94.2 0.44 9.6E-06 46.0 10.2 114 3-136 28-150 (287)
445 TIGR01318 gltD_gamma_fam gluta 94.2 0.18 4E-06 53.6 8.7 33 2-36 142-174 (467)
446 PRK12771 putative glutamate sy 94.2 0.13 2.9E-06 56.0 7.8 33 2-36 138-170 (564)
447 PRK14177 bifunctional 5,10-met 94.2 0.41 9E-06 47.1 10.4 80 317-447 152-231 (284)
448 PRK04690 murD UDP-N-acetylmura 94.2 0.74 1.6E-05 49.0 13.2 33 2-36 9-41 (468)
449 PRK08328 hypothetical protein; 94.2 0.18 3.8E-06 48.4 7.7 42 2-45 28-70 (231)
450 KOG0022 Alcohol dehydrogenase, 94.1 0.19 4.1E-06 49.7 7.7 72 3-88 195-272 (375)
451 PRK12548 shikimate 5-dehydroge 94.1 0.42 9.2E-06 47.4 10.6 39 3-43 128-170 (289)
452 PRK12779 putative bifunctional 94.1 0.081 1.8E-06 61.0 6.1 33 2-36 307-339 (944)
453 PLN02616 tetrahydrofolate dehy 94.1 0.21 4.7E-06 50.5 8.3 72 2-128 232-304 (364)
454 PRK12320 hypothetical protein; 94.1 0.24 5.1E-06 55.0 9.4 34 2-37 1-35 (699)
455 PF01494 FAD_binding_3: FAD bi 94.1 0.056 1.2E-06 54.2 4.3 34 2-37 2-35 (356)
456 TIGR03855 NAD_NadX aspartate d 94.0 0.57 1.2E-05 44.8 10.9 87 29-153 5-95 (229)
457 PLN00203 glutamyl-tRNA reducta 94.0 1.3 2.7E-05 47.7 14.5 129 309-465 250-389 (519)
458 PRK14184 bifunctional 5,10-met 94.0 0.24 5.1E-06 48.9 8.3 72 2-128 158-234 (286)
459 PRK12769 putative oxidoreducta 94.0 0.22 4.8E-06 55.3 9.1 33 2-36 328-360 (654)
460 PRK14187 bifunctional 5,10-met 94.0 0.46 1E-05 47.0 10.3 78 318-446 154-231 (294)
461 PRK12491 pyrroline-5-carboxyla 94.0 0.4 8.6E-06 47.2 9.9 115 325-479 3-122 (272)
462 PRK14176 bifunctional 5,10-met 93.9 0.45 9.8E-06 46.9 10.1 79 318-447 158-236 (287)
463 PRK07588 hypothetical protein; 93.9 0.061 1.3E-06 55.5 4.4 34 2-37 1-34 (391)
464 PRK10792 bifunctional 5,10-met 93.9 0.46 9.9E-06 46.9 10.1 79 318-447 153-231 (285)
465 PF13450 NAD_binding_8: NAD(P) 93.9 0.091 2E-06 40.1 4.2 29 6-36 1-29 (68)
466 PRK07538 hypothetical protein; 93.9 0.063 1.4E-06 56.0 4.4 34 2-37 1-34 (413)
467 PRK11728 hydroxyglutarate oxid 93.9 0.074 1.6E-06 55.1 4.9 35 2-36 3-37 (393)
468 PRK14191 bifunctional 5,10-met 93.9 0.38 8.1E-06 47.5 9.5 79 318-447 151-229 (285)
469 PLN02516 methylenetetrahydrofo 93.9 0.49 1.1E-05 47.0 10.3 79 318-447 161-239 (299)
470 PRK14181 bifunctional 5,10-met 93.8 0.31 6.8E-06 48.0 8.8 74 2-128 154-230 (287)
471 COG0451 WcaG Nucleoside-diphos 93.8 0.17 3.6E-06 50.1 7.2 37 2-40 1-38 (314)
472 TIGR01724 hmd_rel H2-forming N 93.8 0.2 4.4E-06 49.9 7.5 86 346-451 32-120 (341)
473 PRK14193 bifunctional 5,10-met 93.8 0.53 1.2E-05 46.4 10.3 80 317-447 151-232 (284)
474 PRK14174 bifunctional 5,10-met 93.8 0.32 6.8E-06 48.3 8.8 71 2-127 160-235 (295)
475 cd01065 NAD_bind_Shikimate_DH 93.8 0.48 1E-05 41.9 9.3 112 320-462 15-135 (155)
476 PRK14171 bifunctional 5,10-met 93.8 0.54 1.2E-05 46.4 10.3 79 318-447 153-231 (288)
477 TIGR03219 salicylate_mono sali 93.7 0.07 1.5E-06 55.7 4.4 34 2-37 1-35 (414)
478 PRK00377 cbiT cobalt-precorrin 93.7 2.2 4.8E-05 39.6 14.1 114 3-144 43-161 (198)
479 COG0665 DadA Glycine/D-amino a 93.6 0.086 1.9E-06 54.1 4.9 33 2-36 5-37 (387)
480 PRK07236 hypothetical protein; 93.6 0.083 1.8E-06 54.5 4.7 34 2-37 7-40 (386)
481 cd01079 NAD_bind_m-THF_DH NAD 93.6 0.6 1.3E-05 43.3 9.7 100 320-448 58-157 (197)
482 PF00899 ThiF: ThiF family; I 93.6 0.12 2.7E-06 44.9 5.1 40 2-43 3-43 (135)
483 PRK08163 salicylate hydroxylas 93.6 0.078 1.7E-06 54.8 4.4 34 2-37 5-38 (396)
484 PRK06153 hypothetical protein; 93.6 0.072 1.6E-06 54.5 4.0 41 2-44 177-218 (393)
485 PRK10538 malonic semialdehyde 93.6 0.9 2E-05 43.5 11.6 40 2-43 1-41 (248)
486 PF01266 DAO: FAD dependent ox 93.6 0.1 2.3E-06 52.3 5.3 31 3-35 1-31 (358)
487 PLN02477 glutamate dehydrogena 93.6 0.75 1.6E-05 47.9 11.5 32 2-35 207-239 (410)
488 PRK06847 hypothetical protein; 93.5 0.081 1.8E-06 54.2 4.4 35 1-37 4-38 (375)
489 PRK06617 2-octaprenyl-6-methox 93.5 0.083 1.8E-06 54.3 4.5 34 1-36 1-34 (374)
490 PF12847 Methyltransf_18: Meth 93.5 0.69 1.5E-05 38.2 9.4 103 3-126 4-110 (112)
491 COG0654 UbiH 2-polyprenyl-6-me 93.5 0.087 1.9E-06 54.5 4.5 33 1-35 2-34 (387)
492 COG2227 UbiG 2-polyprenyl-3-me 93.5 0.51 1.1E-05 45.1 9.2 100 2-130 61-163 (243)
493 COG4074 Mth H2-forming N5,N10- 93.5 3.8 8.2E-05 38.5 14.6 103 65-196 126-230 (343)
494 TIGR00936 ahcY adenosylhomocys 93.5 0.76 1.6E-05 47.8 11.3 100 321-456 192-294 (406)
495 PRK12814 putative NADPH-depend 93.4 0.17 3.8E-06 56.1 7.0 34 2-37 194-227 (652)
496 PRK14618 NAD(P)H-dependent gly 93.4 0.45 9.7E-06 48.1 9.5 103 325-450 5-107 (328)
497 PRK03815 murD UDP-N-acetylmura 93.4 0.44 9.6E-06 49.6 9.6 31 2-35 1-31 (401)
498 PRK12557 H(2)-dependent methyl 93.4 0.31 6.7E-06 49.6 8.2 85 346-450 32-119 (342)
499 cd01486 Apg7 Apg7 is an E1-lik 93.4 0.24 5.2E-06 49.1 7.1 41 3-45 1-42 (307)
500 PRK05335 tRNA (uracil-5-)-meth 93.3 0.098 2.1E-06 54.5 4.6 35 1-37 2-36 (436)
No 1
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=100.00 E-value=1.4e-100 Score=797.40 Aligned_cols=473 Identities=90% Similarity=1.398 Sum_probs=434.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+||||+++|..|++++.|++|+++|+++++++++++|..+++|+++++++.+...+++++|+++++++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999987446889999999999999999999999999999987644456999999988899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||.+.++.+++..+|++++++++++|+++++++++||.+||+||||++++.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999987644333458999999999999999999999999999999999999988877654467899999999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
||++++++.+|++||+|+.++.+.+++.++++++|+.+.+..++..+++++||++|+++|+|++++|+|+||++++|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999874433366889999999998744578889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhcC
Q 011650 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFN 320 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (480)
|+|+++|+++++++||+|++|++||+||||||||||+++|++.+++.|+++.++++++++++|++||+++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999988667899999999999999999999998877
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|||+|||+||+|+|+||+++|++.|+++|++|.+|||++..++..+.++...++|++|.++++-++.....+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 78999999999999999999999999999999999999999999999887665567667899999988787777766678
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCcccc
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWL 473 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
++++++++++++||+||++|+|++|++++|+.+.+.|++|++|||+||+++++.+++.||+|+|+|++.++||
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~~~~~~~ 473 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCCCCCCCC
Confidence 9999999999999999999999999999999999999888789999999999999999999999999999997
No 2
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3e-95 Score=685.44 Aligned_cols=480 Identities=83% Similarity=1.335 Sum_probs=463.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+-||+||+|.|..+.++.++|..+|+++|++..++++||+..+|+||||+++.++++...++.|++|++.++.++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+.|.||....|.|.++.+|++|++++.+.|++.....++|+..||+|+.+.+.+..+|...+.|..|.+.++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999998888888899999999999999999999999999999999999999999997666688999999999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+|.++.++++|+|++|||.++...-++.+.+..+|++..+...+.+++.+++|+.||+.|+|++..|+.+|.+..+||..
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999987766677888899999999987789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhcC
Q 011650 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFN 320 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (480)
|+|+.+|..+++++.|||++|++.+.||||+||.||+..|+++++.+|+|+++.+|++++.+|+||+.++++++...|+.
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc-Cc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI-NQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 399 (480)
.+.++||+|||+|||.||.|+||||++.+.+.|++.++...+|||.+..+.+.++|....++||+|.|+++.++... ..
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~k~ 400 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVSKQ 400 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999855 78
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCccccccCCCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+++..++|+|.++|++++|+|.|+||+++|+++|.+.|.+|++||||||++|.+++++.||+.+.||.+.++|+++||++
T Consensus 401 VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~~dq~~~~~~a~ 480 (481)
T KOG2666|consen 401 VTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKPLDQWLKDMPAV 480 (481)
T ss_pred eeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCChHHhhcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011650 480 A 480 (480)
Q Consensus 480 ~ 480 (480)
+
T Consensus 481 g 481 (481)
T KOG2666|consen 481 G 481 (481)
T ss_pred C
Confidence 5
No 3
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.4e-95 Score=711.71 Aligned_cols=412 Identities=43% Similarity=0.715 Sum_probs=385.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+..|.+|++. ||+|+++|+++++++.|++|..|++|||+++++++ ...+++++|+|++++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999998 99999999999999999999999999999999986 55678999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||..++| +.|+++++++++.|.++++..++||++|||||||++.+.+.+.+...+.+|.++++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999998855 8999999999999999999889999999999999999988776655445899999999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC-CCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV-PEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
+|+|++++++|+|||+|.. ++++.+.++++|..+. ...++..++..+||++||+.|+|++++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~----~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR----SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC----ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 4567888999998753 2357888999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
.|+|.++|+++++.|+|||.+|++||+||||+|||||+.+|+..|++.|++ ..+++++.++|+.|+.++++++.+.++
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 789999999999999999999999875
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+++++|+||||+|||||||+|+||++.|++.|++.|++|++|||.+.++.... +++
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~----------------------~~~ 363 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN----------------------FPD 363 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc----------------------CCC
Confidence 89999999999999999999999999999999999999999999998765321 236
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
+.+++++++++++||++|+.|.|++|+++||+.+ +|+.| +|||+||+|+++
T Consensus 364 ~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~~ 414 (414)
T COG1004 364 VELESDAEEALKGADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDPD 414 (414)
T ss_pred ceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCCC
Confidence 7899999999999999999999999999999998 89988 899999999863
No 4
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-94 Score=706.91 Aligned_cols=418 Identities=33% Similarity=0.475 Sum_probs=378.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||||||||+|+|..|+++ |++|+|+|+|+.+++.+|+|.+++.|+++++++++ +..|++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999997765 56789999999988 78999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHH-HhhcC---CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIL-MHNSR---GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l-~~~~~---g~~~~v~~~P 156 (480)
++|||||||.+. .+.||+++++++.+.|+++|++|++||.+||++||||+++...+ ++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~-----~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKK-----YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCC-----CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999876 45999999999999999999999999999999999999976554 54343 6899999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||..||+..+++.+.++| +||. ++++.+.+..+|+.+.. ..+.++++.+|||+|+.+|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kV-IgG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-IGGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCce-eecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999997 5776 58999999999999986 47788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++|| .+.++||||+||||+|.||+||++.|+++|.+ +++++.++++|+.||.|++.++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 58899999999999999999999999999988 899999999999999999999988
Q ss_pred Hh---cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC
Q 011650 317 SM---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS 393 (480)
Q Consensus 317 ~~---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.| ++.+++++|+|+|||||+|++|+||||+++|++.|.+.|++|.+|||+++.-. .+..+
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~-~~~~~---------------- 374 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELP-TREDG---------------- 374 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcch-hhhhc----------------
Confidence 55 67889999999999999999999999999999999999999999999998633 11100
Q ss_pred CCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011650 394 PSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGK 467 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
..++ ..+++++++++|+|||+|+|++|+.+|++.+.+. .+ +|||+||++++.... +.++|+
T Consensus 375 ----~~~~-~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~--~~-vivDtrnV~~~~~~~-----~~~i~~ 435 (436)
T COG0677 375 ----EGVT-LAILEEALKDADAVVIATDHSEFKEIDYEAIGKE--AK-VIVDTRNVWKREREA-----AKGIGR 435 (436)
T ss_pred ----cccc-hhhHHHHhccCCEEEEEeccHHhhcCCHHHhccC--Cc-EEEECccccchhhhh-----hhcccC
Confidence 1112 3678999999999999999999999999998765 34 999999999987654 556664
No 5
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=100.00 E-value=2.6e-82 Score=655.58 Aligned_cols=407 Identities=24% Similarity=0.321 Sum_probs=359.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+||||++||.+|++ ||+|++||+++++++.+++|..|+.|++++++... +++.++++.+ ++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCC
Confidence 3899999999999999999886 69999999999999999999999999999998653 6788998876 589999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhcC---CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNSR---GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~---g~~~~v~~~P 156 (480)
++|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++..+ +.+|.++|+|
T Consensus 79 vvii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~P 153 (425)
T PRK15182 79 FYIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSP 153 (425)
T ss_pred EEEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCC
Confidence 99999999986643 7999999999999999999999999999999999997 4566665332 4679999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||+.+|.+..++.+++++|+|+. +++.+.++++|+.+.....++.+++++||++|+++|+|++++|+|+||++.+
T Consensus 154 E~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 154 ERINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred CcCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876653 6788899999999863346788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++|++++++++++ ..+.||+ |||||||||+++|++.+++.|+. ++++++++++|+.||+++++++++
T Consensus 229 ae~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~ 303 (425)
T PRK15182 229 FNRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIK 303 (425)
T ss_pred HHHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999753 2345666 99999999999999999999987 789999999999999999999999
Q ss_pred Hh---cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC
Q 011650 317 SM---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS 393 (480)
Q Consensus 317 ~~---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+ ++++++++|+|||+|||+||+|+||||+++|++.|.++|++|.+|||++..+...+.++
T Consensus 304 ~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~---------------- 367 (425)
T PRK15182 304 AMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG---------------- 367 (425)
T ss_pred HHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC----------------
Confidence 87 45688999999999999999999999999999999999999999999987655433221
Q ss_pred CCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH
Q 011650 394 PSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
.... .+.++++||+|||+|+|++|+++||+.+.+.|+.|.+|||+||+++.+
T Consensus 368 ------~~~~--~~~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 368 ------IIPV--SEVKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred ------cccc--hhhhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 1001 123578999999999999999999999999887655999999999854
No 6
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=1.8e-79 Score=636.76 Aligned_cols=406 Identities=40% Similarity=0.625 Sum_probs=371.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++|..+++|+++++++.+. ..+++++++++++++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999998 999999999999999999999999999999987652 3466899999998899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHH-HHHHhhc--C-CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE-KILMHNS--R-GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (480)
+||+|||||...++ .+|++++.++.+++.++++++++|+++||++|||++++. +.+++.. . +.+|.++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999986643 899999999999999999999999999999999999885 5555522 1 5678999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
|++.+|.+..++.+|+++++|++ +++.++++++|+.++...+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998853 8899999999999862246788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++++++.+++.||+||||+|++||++++.+.|++.|++ .+++++++++|+.||+++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.| +++++++|+|||+||||||+|+||||++.|++.|+++|++|.+|||++..+.... +
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~-~-------------------- 364 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG-L-------------------- 364 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh-c--------------------
Confidence 88 5789999999999999999999999999999999999999999999998765321 1
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
..+.+++++++++|+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 365 ----~~~~~~~~~~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 365 ----PLIDDLEEALKGADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred ----ccCCCHHHHHhCCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 1246889999999999999999999999999999999888 9999997
No 7
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-78 Score=624.30 Aligned_cols=394 Identities=28% Similarity=0.410 Sum_probs=348.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|+||+++|.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...++++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 58999999999999999999998 99999999999999999999999999999998764 345778887753 479
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC----------CCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR----------GIN 149 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----------g~~ 149 (480)
|+||+|||||.+.++ .+|++++.+++++|.++++++++||++||++||+++++...+.+.+. +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999986643 89999999999999999999999999999999999999877665321 357
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011650 150 FQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
|.++|+|||+.+|.+..++.++++++ ||. ++++.++++++|+.+++ ..++.+++++||++|+++|+|++++|++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~----~~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGM----TPVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeC----CHHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999875 775 37899999999999875 4667889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHH
Q 011650 230 VNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTR 309 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (480)
+||++.+|+++|+|+++|+++++++||+ .+++||+||||||||||+++|.+. .+.. ++++++++++|+.||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~~---~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQ---NPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHHh---cCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 578999999999999999999763 4443 68999999999999999
Q ss_pred HHHHHHHHh-------cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChhHHHhhhhcccC
Q 011650 310 FVNRVVSSM-------FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQEHIQRDLQMNKF 381 (480)
Q Consensus 310 ~~~~~~~~~-------~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~ 381 (480)
+++++.+.+ ++++++++|+|||+|||+||+|+||||+++|++.|+++| ++|.+|||++...... +
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~--~----- 371 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK--L----- 371 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh--c-----
Confidence 999999876 456889999999999999999999999999999999996 9999999998653211 1
Q ss_pred CCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 382 DWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
...+. ..++++++++||+|||+|+|++|+++||+++ ..| +|||+
T Consensus 372 ---------------~~~~~-~~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~----~~~-~v~D~ 415 (415)
T PRK11064 372 ---------------DGLVT-LVSLDEALATADVLVMLVDHSQFKAINGDNV----HQQ-WVVDT 415 (415)
T ss_pred ---------------cCcee-eCCHHHHHhCCCEEEECCCCHHhccCCHHHh----CCC-EEEeC
Confidence 01122 3789999999999999999999999999875 346 89995
No 8
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-78 Score=618.15 Aligned_cols=374 Identities=24% Similarity=0.370 Sum_probs=331.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||||+++|..|+ . ||+|++||+++++++++++|..+++|+++++++.+. .+++++++++.+++.+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998887 4 899999999999999999999999999999987642 4567778888887899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||||.+.. ...+|++++++++++|.+ ++++++||++||+||||++++.+.+.+ +.++|+|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999996542 237899999999999988 689999999999999999999877653 357899999999
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHH-hccCCCC-eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVY-AHWVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~-~~~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
|++++++++|++||+|+. ++..+++.++| ..+.... +++++++++||++|+++|+|++++|+|+||++++|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 34556666666 4433222 3357999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.++ +++ ++++++++++|+.||+++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~~--~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQ--SVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhcc--CCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 9999999999999999999999999999999999999999987764 445 6799999999999999999999874
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
++++|+|||+||||||+|+||||+++|++.|.++|++|.+|||+++... . .+
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~----------------------~~ 346 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---F----------------------FN 346 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---h----------------------cC
Confidence 6789999999999999999999999999999999999999999986543 1 14
Q ss_pred eEEecChhhhcccCcEEEEeecCccccccc
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLD 429 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~ 429 (480)
+.+++++++++++||++|+.|.|+||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK15057 347 SRLERDLATFKQQADVIISNRMAEELKDVA 376 (388)
T ss_pred CeeeCCHHHHHHhCCEEEEcCCcHHHHhhh
Confidence 778999999999999999999999998753
No 9
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=100.00 E-value=1.6e-37 Score=286.96 Aligned_cols=182 Identities=41% Similarity=0.624 Sum_probs=149.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+++|..||++ ||+|+++|+|+++++.+++|..|++|+++++++++. ..+++++++|.++++.+||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 999999999999999999999999999999999874 4799999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhcC-CCceEEeeCCcc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNSR-GINFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~-g~~~~v~~~Pe~ 158 (480)
++|+|||||.+.++ .+|++++++++++|+++++++++|+++||+||||+++ +.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998744 8999999999999999999999999999999999995 5678887764 478999999999
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDV 194 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l 194 (480)
+.||+++.++.+|++|++|.. ++.+.+++++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~----~~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCD----DESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEES----SHHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCC----cHHHHHHHhcC
Confidence 999999999999999988775 35555566654
No 10
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.98 E-value=1.2e-30 Score=252.93 Aligned_cols=249 Identities=21% Similarity=0.223 Sum_probs=208.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||++||+|.||.|||.+|.++ ||+|++||+++++ ++.+... +.+..+++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999999 5555431 2455677888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||.+ ..+++++ ..+.+.+++++++|++||++|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999864 2356666 57889999999999999999999999999998875 24468998
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+....+ .||+||+ ++.+++++++|+.+++ ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666655444 5889986 8999999999999984 577888899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCc-------cc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPK-------FL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~-------~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|+..+.++++...--+|. ++ .+.|||.-..+.||+.+..+.|++.|++ .++...+.
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~~ 262 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALAA 262 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 99999999999999876422221 11 3677899999999999999999999998 55555443
No 11
>PLN02858 fructose-bisphosphate aldolase
Probab=99.97 E-value=4.9e-29 Score=288.18 Aligned_cols=382 Identities=11% Similarity=0.072 Sum_probs=282.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|||+||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +.+.++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999998 99999999999999988752 23567789998999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .+++++ +++.+.++++++||++||+.|.+++++.+.+.+.+. ...++.+|..
T Consensus 64 Vi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAYVS 127 (1378)
T ss_pred EEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEccCc
Confidence 999998652 345554 578888899999999999999999999888877641 2345788887
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC-TNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+..+..... .+++||+ ++.+++++++|+.++. ..+++ ++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554433322 4788986 7899999999999874 34444 7899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHH-----h
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKV-----N 303 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~-----N 303 (480)
++.|+|++.++++++..+.-++ +++ .+.+||....+.||+.+..++|++.|++ .++...+.+. +
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQLISGSS 276 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHh
Confidence 9999999999999987642111 111 3566788899999999999999999998 5555544431 1
Q ss_pred h-----HhHHHHHHHHHHHhc-----------------------CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh
Q 011650 304 D-----YQKTRFVNRVVSSMF-----------------------NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355 (480)
Q Consensus 304 ~-----~~~~~~~~~~~~~~~-----------------------~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~ 355 (480)
. ... .+++.+.+..+ ++-..++|+++|+.. ....+++.|.+
T Consensus 277 ~G~g~~D~s-av~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~----------MG~~mA~~L~~ 345 (1378)
T PLN02858 277 SMQGDDTAT-SLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGA----------MGFGMASHLLK 345 (1378)
T ss_pred cCCCccChH-HHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchH----------HHHHHHHHHHH
Confidence 1 111 12221211000 111237899999865 89999999999
Q ss_pred CCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcc-cccc--cHHH
Q 011650 356 DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDE-FKNL--DYQK 432 (480)
Q Consensus 356 ~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~--~~~~ 432 (480)
.|++|.+||+.....+.... .+.....++.++++++|+|++++..++ .++. ....
T Consensus 346 ~G~~V~v~dr~~~~~~~l~~----------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 346 SNFSVCGYDVYKPTLVRFEN----------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCCEEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 99999999986543221111 123346788999999999999999654 2221 1123
Q ss_pred HHhhcCCCCEEEEcCCCCChH------HHhh--cCcEEEE
Q 011650 433 IYNNMQKPAFVFDGRNILDVE------KLRK--IGFIVYS 464 (480)
Q Consensus 433 ~~~~~~~~~~i~D~~~~~~~~------~~~~--~g~~y~~ 464 (480)
+...+++..+|||...+-+.. .+.+ .|+.|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 445566666999998877542 2234 5777754
No 12
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=1.1e-27 Score=238.61 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=200.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.++|..|++. |++|++||+++++++.+.+. +...++++++++++||
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 57999999999999999999998 99999999999998877642 2345677888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+++++.+.+++.+ +.++++|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g----~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKG----IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcC----CcEEEcCC
Confidence 9999998642 234443 45778888999999999999999999888877653 24568898
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
+..+..+..+.. .+++|++ +++++++.++++.++. ..+++++.+.|+.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655443322 4778875 7789999999999864 466677889999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCC-------CCccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i-------~~~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++++.+...... ..+++ .+.+||...++.||..++.+++++.|++ .++++.+.+
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 264 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVME 264 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 99999999999999754210 01111 2457799999999999999999999998 566665443
No 13
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.96 E-value=6.3e-28 Score=240.05 Aligned_cols=253 Identities=16% Similarity=0.144 Sum_probs=198.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. +...++++.+++++||
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999887752 1234567788889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||++. ++..+....+.+.+.++++++++++||++|.+++++.+.+.+.+ +.++.+|....
T Consensus 60 vVi~~vp~~~-----------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV~g~ 124 (296)
T PRK15461 60 FVITMLPNGD-----------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPVGRT 124 (296)
T ss_pred EEEEecCCHH-----------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccCCCC
Confidence 9999998642 12222222245677788999999999999999999988887754 23457887655
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+..+..... .+++||+ ++.+++++++|+.++. ..++.++.+.+..+|+++|.+...+++.++|...+|++.
T Consensus 125 ~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~ 195 (296)
T PRK15461 125 SDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEAL 195 (296)
T ss_pred HHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 443332221 3677875 7899999999999874 567788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCC-------C-ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 241 GADVSQVSHAIGFDSRIG-------P-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~-------~-~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|+|++.++++++..+..+ . .++ .+.++|....+.||+.+..+.+++.|++ .++.+.+.
T Consensus 196 Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~~ 263 (296)
T PRK15461 196 GLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAASR 263 (296)
T ss_pred CCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999987543110 1 111 2355788889999999999999999998 55555433
No 14
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.96 E-value=1.1e-27 Score=237.96 Aligned_cols=248 Identities=19% Similarity=0.212 Sum_probs=195.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||+|||+|.||.++|..|++. ||+|++||+++++++.+.+. + ...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g-~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA------------------G-AVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC------------------C-CcccCCHHHHHhcCCEE
Confidence 699999999999999999998 99999999999998887652 1 22345677788999999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||++. .++.++ ..+.+.++++++|++.||+.|.+++++.+.+++.+ . .++.+|...
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g--~--~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKG--I--DYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--CEEecCCCC
Confidence 99998632 223333 45667788899999999999999998888887653 2 345688876
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+..+.... ..+++|++ ++++++++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~---l~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGT---LSIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCC---EEEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544332 24778875 7899999999999874 46666777999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 240 TGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|+|++++.++++.....++ ++. .+.+||+..|+.||+.++.+.+++.|++ .++++.+.
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~ 260 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQ 260 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 99999999999985431111 111 2347899999999999999999999998 56666543
No 15
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.96 E-value=7.4e-27 Score=231.65 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=197.0
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEE
Q 011650 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVS 85 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (480)
|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999998 99999999999999888752 234567888889999999999
Q ss_pred ccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccC
Q 011650 86 VNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEG 162 (480)
Q Consensus 86 Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
||++. .+++++ +++.+.++++++||++||+.|++++++.+.+++.+ . .++.+|....+.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g--~--~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG--A--VFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--cEEECCCCCCHH
Confidence 99642 234555 67888889999999999999999999988887654 2 347889887665
Q ss_pred ccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 011650 163 TAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gi 242 (480)
.+..+.. .+++||+ ++.+++++++|+.++. ..+++++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5443322 4678885 6789999999999874 46677788999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCCc--------------c--ccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 243 DVSQVSHAIGFDSRIGPK--------------F--LNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 243 d~~~v~~~~~~~~~i~~~--------------~--~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++.+.++++..+.-++. . -.+.++|....+.||+.+..+.|++.|++ .++.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 264 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALAR 264 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999865311110 0 12345677778899999999999999998 55555443
No 16
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=9.6e-27 Score=230.71 Aligned_cols=247 Identities=17% Similarity=0.178 Sum_probs=192.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. +.....++.++++.||+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999998 999999999874 3444321 23445677888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ ..+.+.+.++++||++||+.|.+++++.+.+++.+ .. ++.+|..
T Consensus 59 Vi~~v~~~--------------~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~--~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDT--------------PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GD--YLDAPVS 120 (292)
T ss_pred EEEeCCCh--------------HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CC--EEEecCC
Confidence 99999864 2344544 23566678899999999999999999988887764 23 3567866
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+..... .+++||+ ++.+++++++|+.++. ..+++++.+.+..+|+++|.+.+.++..+.|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443322211 4678885 7899999999999874 5678888999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCC-------CCccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQV 299 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i-------~~~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+.|+|+++++++++..+.- ..+++ .+.++|....+.||+.+..++|++.|++ .++.+.+
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~~ 259 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTATC 259 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHH
Confidence 9999999999998755311 11121 2346789999999999999999999998 5555443
No 17
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=5.9e-27 Score=222.91 Aligned_cols=241 Identities=17% Similarity=0.225 Sum_probs=197.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++||+||+|.||.+|+.+|.+. ||.|++|||+.++++.+.+. +.++..+|.|+++.||+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 6899999999999999999999 99999999999999988863 24567789999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
||.|||+|.+. ++++ ..+...++++... |++||++|.+.+++.+.++... ...+.+|.
T Consensus 95 vitmv~~~~~v--------------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPV 156 (327)
T KOG0409|consen 95 VITMVPNPKDV--------------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPV 156 (327)
T ss_pred EEEEcCChHhh--------------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccc
Confidence 99999987543 3333 3344555676666 8999999999999988877653 24568898
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
......+....+ .|++||+ ++.++...++|+.+++ ..++.+..+.+..+|+++|...+.++..+.|...|+
T Consensus 157 SGg~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la 227 (327)
T KOG0409|consen 157 SGGVKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALA 227 (327)
T ss_pred cCCchhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544444443 4788875 8899999999999974 567788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCcccc---------CCCCccccchhhhHHHHHHHHHHCCCc
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLN---------ASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~---------pg~g~gG~c~~kD~~~l~~~a~~~g~~ 290 (480)
+++|+|...+++++++..--++.+.. +.|||+...+.||+......+.+.+.+
T Consensus 228 ~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 228 DRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999985311222222 445688889999999999999998887
No 18
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=99.94 E-value=4.6e-27 Score=197.76 Aligned_cols=106 Identities=42% Similarity=0.678 Sum_probs=88.2
Q ss_pred EEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChh
Q 011650 328 AILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAY 407 (480)
Q Consensus 328 ~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (480)
+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.+....... ..+++++++++
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-------------------~~~~~~~~~~~ 61 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK-------------------LEGVEVCDDLE 61 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-------------------HHCEEEESSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-------------------ccceEEecCHH
Confidence 69999999999999999999999999999999999999999887654210 13578889999
Q ss_pred hhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 408 EATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 408 ~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
++++++||+|++|+|++|+.++|+.+...|+++++|||+||+++|
T Consensus 62 ~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 62 EALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp HHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred HHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 999999999999999999999999999999777799999999986
No 19
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=99.93 E-value=5.5e-26 Score=186.23 Aligned_cols=96 Identities=42% Similarity=0.697 Sum_probs=88.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCC
Q 011650 209 LWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNG 288 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g 288 (480)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|+++++++||++..++.||+||||+|||||+.+|.+.+++.|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHhhHh
Q 011650 289 LPEVANYWKQVIKVNDYQ 306 (480)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (480)
.+ ..++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 98 67999999999976
No 20
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.93 E-value=5.2e-24 Score=212.28 Aligned_cols=267 Identities=16% Similarity=0.114 Sum_probs=204.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++.+.+.+. +...+.+++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999998887642 23456777776665
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++ ..++++++.+.+.++++++||++||+.|.+++++.+.+++.+ ..++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999864 235677788888899999999999999999988888777653 245788887
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE--DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+-.+.... .+++||+ ++++++++++++.++.. ..++.++++.+..+|+++|.+...++..+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654443331 4788986 78999999999998631 35777889999999999999999999999999999
Q ss_pred HHHcC--CCHHHHHHHhcCCCCCCCc--------cccCCCCccccchhhhH---HHHHHHHHHCCCchhhhHHHHHH---
Q 011650 237 CEATG--ADVSQVSHAIGFDSRIGPK--------FLNASVGFGGSCFQKDI---LNLVYICECNGLPEVANYWKQVI--- 300 (480)
Q Consensus 237 ~~~~g--id~~~v~~~~~~~~~i~~~--------~~~pg~g~gG~c~~kD~---~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++.| +|+.+++++++.....++. +..-...+.-..+.||. .+.++.|++.|++ .+++..++
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~~~~ 270 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASLFMR 270 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 99999 9999999999854211111 11100112346778897 7889999999998 67777664
Q ss_pred --HHhhHhH-HHHHHHHHHHh
Q 011650 301 --KVNDYQK-TRFVNRVVSSM 318 (480)
Q Consensus 301 --~~N~~~~-~~~~~~~~~~~ 318 (480)
..|+.-+ ...++-+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~a~~~~f 291 (299)
T PRK12490 271 FASQEDDSFHMKVVSALRNQF 291 (299)
T ss_pred HHhCccCChHHHHHHHHHHhh
Confidence 3444444 45555555544
No 21
>PLN02858 fructose-bisphosphate aldolase
Probab=99.93 E-value=2.7e-24 Score=248.94 Aligned_cols=252 Identities=13% Similarity=0.107 Sum_probs=200.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++|||||+|+||.+||.+|+++ ||+|++||+++++++.+... + ....+++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~------------------G-a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA------------------G-GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CeecCCHHHHHhcCC
Confidence 37899999999999999999998 99999999999999887642 1 234567888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||+|.. +++++ .++.+.++++++||++||+.|++++++.+.+++.+ ..+.++.+|.
T Consensus 383 vVi~~V~~~~~--------------v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEVQ--------------AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChHH--------------HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 99999997632 34443 45677788999999999999999999988887732 2345678887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC-TNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
...+..+..... .+++||+ ++.+++++++|+.++. ..++. ++++.|+.+|+++|.+.+.+++.++|+..+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654433322 4788986 7899999999999874 34443 579999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+++.|+|++.++++++....-++ +++ .+.++|....+.||+.+..+.+++.|++ .++...+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~ 588 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAH 588 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999998875532111 111 2456788899999999999999999998 45544443
No 22
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.93 E-value=5.9e-24 Score=222.31 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=199.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE-- 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
+++|||||+|.||.+||.+|+++ ||+|++|||++++++.+.+.... .|. ..+..+.+++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~Ga---------~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EGN---------LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cCC---------cccccCCCHHHHHhcCC
Confidence 47899999999999999999998 99999999999999988752000 000 113356788887765
Q ss_pred -CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 -ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||.+ ..+++++.++.+.+.+|++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 346777788999999999999999999999999888887764 34568887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE-----DRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
...+..+..+ +.+++||+ ++++++++++++.++.. ..+++++.+.+..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G----~~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG----PSLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC----CeEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766544322 26889986 88999999999998731 2567788999999999999999999999999
Q ss_pred HHHHHHH-cCCCHHHHHHH---hcCCCCCCC------ccc----cCCCCccccchhhhHH------HHHHHHHHCCCchh
Q 011650 233 MSALCEA-TGADVSQVSHA---IGFDSRIGP------KFL----NASVGFGGSCFQKDIL------NLVYICECNGLPEV 292 (480)
Q Consensus 233 ~~~l~~~-~gid~~~v~~~---~~~~~~i~~------~~~----~pg~g~gG~c~~kD~~------~l~~~a~~~g~~~~ 292 (480)
...++++ .|+|++++.++ ++.++--++ ..+ ..+++|-...+.||.. .....|.++|++
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999999888 455431111 111 1355688889999999 899999999998
Q ss_pred hhHHH
Q 011650 293 ANYWK 297 (480)
Q Consensus 293 ~~~~~ 297 (480)
.+++.
T Consensus 283 ~p~i~ 287 (493)
T PLN02350 283 APTIA 287 (493)
T ss_pred ccHHH
Confidence 56533
No 23
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.91 E-value=2.7e-22 Score=200.16 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=201.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+. +.+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 6999999999999999999998 99999999999999887642 24556777776664
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|.+. .+++++..+.+.++++++||+.||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG----IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC----CEEEeCCCC
Confidence 699999998641 34667778888899999999999999999888887777654 234578877
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC---CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE---DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+..+... ..+++||+ ++++++++++|+.+... ..++.++.+.+..+|+++|++...++..+.|...
T Consensus 122 G~~~~a~~g----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERG----YCLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcC----CeEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665444333 15788986 78999999999998741 3577889999999999999999999999999999
Q ss_pred HHHH--cCCCHHHHHHHhcCCCCCCCccc-------cCCCCcc-ccchhhh---HHHHHHHHHHCCCchhhhHHHHHHH-
Q 011650 236 LCEA--TGADVSQVSHAIGFDSRIGPKFL-------NASVGFG-GSCFQKD---ILNLVYICECNGLPEVANYWKQVIK- 301 (480)
Q Consensus 236 l~~~--~gid~~~v~~~~~~~~~i~~~~~-------~pg~g~g-G~c~~kD---~~~l~~~a~~~g~~~~~~~~~~~~~- 301 (480)
++++ .|+|+.++.++++...-+++.++ .-.+.+. -.-+.|| .+.....|.+.|++ .+.+..+..
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a~~~ 270 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAALFM 270 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 9999 99999999999986532222111 1112221 1123455 47788899999998 666665321
Q ss_pred -----HhhHhHHHHHHHHHHHhc
Q 011650 302 -----VNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 302 -----~N~~~~~~~~~~~~~~~~ 319 (480)
.+...+...++-+.+.++
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 271 RFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHhccCCCcHHHHHHHHHHhcC
Confidence 233456666666666553
No 24
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=5.9e-23 Score=207.12 Aligned_cols=281 Identities=18% Similarity=0.212 Sum_probs=198.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++++++.+++.. ...+.++.. ...++.+++++++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 89999999999999999999998 999999999999999888742 222222210 113467788888878899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCC-CceEEeeCCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRG-INFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (480)
|+||+|||++ .+.++++++.+.++++++|+..+ |+.+.+.+.+.+.+++.... ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 35778888999888899888776 88888777777777664321 1345567787
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-----------------HHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV-----------------SKLAAN 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~-----------------~Kl~~N 220 (480)
...+..+ ..+..+++++. +.+..+++.++|+..+. .+....+....+| .|+..|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6543221 12233455554 47889999999997642 2344456555555 678889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC----CCC--CccccCCCCccc--------------cchhhhHHHH
Q 011650 221 AFLAQRISSVNAMSALCEATGADVSQVSHAIGFDS----RIG--PKFLNASVGFGG--------------SCFQKDILNL 280 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~----~i~--~~~~~pg~g~gG--------------~c~~kD~~~l 280 (480)
.+.++....++|+..+|+++|+|++.+.+.++... ..+ .+...||.-++. .-..||..++
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 99999999999999999999999999988754320 001 111112211211 2346999999
Q ss_pred HHHHHHCCCchhhhHHHHHHH--HhhHhHHHHHHHHH
Q 011650 281 VYICECNGLPEVANYWKQVIK--VNDYQKTRFVNRVV 315 (480)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~ 315 (480)
.++++++|++ .|+.+.+.+ .|+.-|+.+++++.
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLM 323 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 9999999998 677777654 46666777666653
No 25
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.89 E-value=7.4e-21 Score=189.48 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=195.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH---Hhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK---HVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.. .....++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-------------------TTGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-------------------CcccCCHHHHHhhcCC
Confidence 7999999999999999999998 999999999999999887632 111233433 2456
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||+. .+.++++++.+.++++++||+.||..+.++.++...+++.+ +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g----~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG----IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC----CeEEecCCC
Confidence 89999999853 35778889999999999999999998888888777776643 234567765
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE--DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+..+... ..+++||+ +++++.++++|+.+... ..++.++.+.+..+|+++|.+...++....|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333322 25788885 78999999999998742 35778889999999999999999999999999999
Q ss_pred HHHc--CCCHHHHHHHhcCCCCCCCccc---------cCCC-Ccccc-chhhhHHHHHHHHHHCCCchhhhHHHHHH---
Q 011650 237 CEAT--GADVSQVSHAIGFDSRIGPKFL---------NASV-GFGGS-CFQKDILNLVYICECNGLPEVANYWKQVI--- 300 (480)
Q Consensus 237 ~~~~--gid~~~v~~~~~~~~~i~~~~~---------~pg~-g~gG~-c~~kD~~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++. |+|.+++.++++...-+.+.++ .|.. .|-.. --.+|.+..+..|.+.|+| .+.+.+++
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al~~~ 269 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSLQSR 269 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 9997 5799999999987642222221 1110 12111 1334566777788888988 66666544
Q ss_pred --HHhh-HhHHHHHHHHHHHhc
Q 011650 301 --KVND-YQKTRFVNRVVSSMF 319 (480)
Q Consensus 301 --~~N~-~~~~~~~~~~~~~~~ 319 (480)
..+. ..|..+++-....++
T Consensus 270 ~~~~~~~~~~~~~~~~~r~~fg 291 (298)
T TIGR00872 270 FASRDLDDFANKVLAALRKEFG 291 (298)
T ss_pred HHhCCCCCcHHHHHHHHHHhhC
Confidence 2233 556777776555543
No 26
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.88 E-value=8.7e-21 Score=198.38 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=170.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh---
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
|++|+|||+|.||.+||.+|+++ ||+|++||+++++++.+++.... ++ ..+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---GN----------TRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---cC----------CcceecCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999988752100 00 12456778888775
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||.+ ..++++++++.+++.++++||+.||..+..+.+....+.+.+ +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G----i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG----ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEcCCC
Confidence 489999999743 356788899999999999999999998777777666666654 34567887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE-----DRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
...+..+.. .+.+++||+ ++++++++++|+.+... ...++++.+++..+|+++|.+....+..+.|
T Consensus 128 SGG~~gA~~----G~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARY----GPSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhc----CCEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 766544432 236899996 88999999999998742 1467788899999999999999999999999
Q ss_pred HHHHHH-HcCCCHHHHHHHhc
Q 011650 233 MSALCE-ATGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~-~~gid~~~v~~~~~ 252 (480)
...+++ +.|+|++++.+++.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 79999999988873
No 27
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.85 E-value=1.2e-19 Score=177.97 Aligned_cols=221 Identities=23% Similarity=0.278 Sum_probs=177.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||.|.||+++|..|+++ ||+|.+|.++++.++++++. .++-|.|+.. ...++.+++|+++++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 3555655542 245789999999999999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+|+++||+ ..+.++++++.++++++++++..|. +.+++.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs---------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPS---------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECCh---------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 999999986 3578899999889999999888885 588888889998888754334788899998
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHH-----------------HHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVS-----------------KLAANA 221 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~-----------------Kl~~N~ 221 (480)
..+-.. ..|+.+++++. +++..++++.+|..-. ..++...|+...|.. ++-.|+
T Consensus 138 A~EVa~----g~pta~~vas~----d~~~a~~v~~~f~~~~-Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~Na 208 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASN----DQEAAEKVQALFSSPY-FRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNA 208 (329)
T ss_pred HHHHhc----CCCcEEEEecC----CHHHHHHHHHHhCCCc-EEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhH
Confidence 876332 34677888887 5888999999998732 123444676665554 455678
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011650 222 FLAQRISSVNAMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~ 253 (480)
-.++....++||.++...+|.+++++....+.
T Consensus 209 kaalitrGL~Em~rlg~~lG~~~~T~~gLsGl 240 (329)
T COG0240 209 KAALITRGLAEMTRLGVALGAKPETFMGLSGL 240 (329)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence 88888899999999999999999988877664
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.84 E-value=2.7e-20 Score=169.17 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=120.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+++.+. +.+.+++++++++.||
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 89999999999999999999998 99999999999999988752 4778899999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHH--HHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARM--IADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~--i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||.+ ..+++++.+ +.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 456788888 999999999999999999999999999888764 455677766
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
..+..+..... .+++||+ ++++++++++|+.++.
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMGK 155 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHEE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHhC
Confidence 55433332221 4788986 7899999999999863
No 29
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.83 E-value=2.9e-19 Score=186.97 Aligned_cols=206 Identities=12% Similarity=0.142 Sum_probs=163.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh---hcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV---REA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~a 79 (480)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... + ..+..++++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~----g----------~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK----G----------KKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC----C----------CCceecCCHHHHHhhcCCC
Confidence 489999999999999999998 99999999999999988752100 0 1234455666644 468
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ ..+.++++++.++++++++||+.||+.+..+.+..+.+.+.+ +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g----i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG----ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC----CEEEcCCCCC
Confidence 9999999853 246778889999999999999999987777766666666543 3456788776
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC-----eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED-----RILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-----~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.+..+..+ +.+++||+ ++++++++++|+.+.... .+++++.+++..+|+++|.+....+..+.|..
T Consensus 127 G~~gA~~G----~~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKG----PSIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcC----CcCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65444333 25788986 789999999999987421 35778889999999999999999999999999
Q ss_pred HHHH-HcCCCHHHHHHHh
Q 011650 235 ALCE-ATGADVSQVSHAI 251 (480)
Q Consensus 235 ~l~~-~~gid~~~v~~~~ 251 (480)
.+++ +.|+|..++.+++
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 7999999998888
No 30
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.83 E-value=6.1e-19 Score=178.25 Aligned_cols=275 Identities=15% Similarity=0.106 Sum_probs=185.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|.||.++|..|+++ ||+|++|++++++.+.+++.. ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999998 999999999999988887532 111111210 012366788888888999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCccc--HHHHHHHHHhhcCCCceEEeeCC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKT--AEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
|+||+|||+. .+++ +.+.++++.+++..+| +.+.+ .+.+.+.+++... ..+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~----v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRE----TLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ-ARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHH----HHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcC-CCeEEEECc
Confidence 9999999853 1233 3355667788887777 56554 5667776654110 123445677
Q ss_pred cccccCccccccCCCC-eEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCc-----------------hhHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPD-RVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNL-----------------WSAEVSKLA 218 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~-~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-----------------~~ae~~Kl~ 218 (480)
....+...- .+. .++.|+ +++..++++++|+..+. ..+...|+ +.+...|+.
T Consensus 136 ~~a~~~~~~----~~~~~~~~~~-----~~~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIARF----LPAATVVASP-----EPGLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHcC----CCeEEEEEeC-----CHHHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 665442211 111 234444 37789999999998642 23322333 445556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC-------CCCCCcc------cc------CCCCccccchhhhHHH
Q 011650 219 ANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFD-------SRIGPKF------LN------ASVGFGGSCFQKDILN 279 (480)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~-------~~i~~~~------~~------pg~g~gG~c~~kD~~~ 279 (480)
+|...++..+.++|+..+++++|+|++++++.++.. +..+.++ .. ..++|...-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 889889999999999999999999999999987741 1111111 11 1123445567899999
Q ss_pred HHHHHHHCCCchhhhHHHHHHHH--hhHhHHHHHHHHH
Q 011650 280 LVYICECNGLPEVANYWKQVIKV--NDYQKTRFVNRVV 315 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (480)
+..++++.|++ .++++.+.++ |+.-|+..++.++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLM 321 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999988 6777776542 3345666666654
No 31
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.2e-17 Score=167.31 Aligned_cols=247 Identities=15% Similarity=0.060 Sum_probs=164.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|+|||+|.||.++|..|+++ |++|++||++++.++..++.. ..+.+...+.. .+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~-----~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAV-----LARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH-----hcCeEEEC
Confidence 68999999999999999999998 999999999998877644210 00000001111 24578899
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCce
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINF 150 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
++++++++||+|++|+|+.. ......++.+.+..+++.++ .+||.+ -...++++.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~ii-~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHAIL-ASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcceE-EEeCCC-CCHHHHHHhcCCc----cc
Confidence 99988899999999998642 12245566676666655544 445543 3445565554332 22
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+++.+|-. +.... +-..++++..+ ++++++++.++++.+++ .+++++....+. +.|. +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~t--~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~----i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPWT--APATLARAEALYRAAGQ-SPVRLRREIDGF----VLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEecCCCccH----HHHH---HHHHHH
Confidence 45566642 22111 11235664433 58899999999999874 455554333332 4443 466899
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCccc-------cCCCCccccchhhhHHHHHHHHHHCCCc
Q 011650 231 NAMSALCEATGADVSQVSHAIGFDSRIGPKFL-------NASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~-------~pg~g~gG~c~~kD~~~l~~~a~~~g~~ 290 (480)
+|+..++++.|+|++++.+++......++.+. ..++||-...+.||..+..+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999976543221111 2345566678899999999998888876
No 32
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=2.4e-17 Score=165.15 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=169.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999998 999999998742 245567889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
||+|+|+. .+.++++.+.++ ++++++|+.+|+ +.|.+.+.+...+........+.+..+|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 356777788764 677888888776 7777766666655543222233344666543
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-----------------HHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV-----------------SKLAANAF 222 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~-----------------~Kl~~N~~ 222 (480)
.+- .. ..+..+++++. +.+..+.++++|+..+. ..+...|+...++ .|+..|..
T Consensus 116 ~ei---~~-~~~~~~~~ag~----~~~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~ 186 (308)
T PRK14619 116 KEI---QQ-GLPAATVVASR----DLAAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAK 186 (308)
T ss_pred HHH---hc-CCCeEEEEEeC----CHHHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHH
Confidence 220 00 01122333443 37889999999998642 2343445333232 34677888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC------C-CCCccccCCCCccccch----------------hhhHHH
Q 011650 223 LAQRISSVNAMSALCEATGADVSQVSHAIGFDS------R-IGPKFLNASVGFGGSCF----------------QKDILN 279 (480)
Q Consensus 223 ~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~------~-i~~~~~~pg~g~gG~c~----------------~kD~~~ 279 (480)
.++....++|+..+++++|+|+..+++..+... . .+.++ . +||...-. .||...
T Consensus 187 ~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~-~--~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~ 263 (308)
T PRK14619 187 AALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNY-Q--VGYGLAQGKSLEQILAELEGTAEGVNTANV 263 (308)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccH-H--HHHHHHCCCCHHHHHHhcCCEeecHHHHHH
Confidence 888999999999999999999999987533221 0 01111 1 22211122 689999
Q ss_pred HHHHHHHCCCchhhhHHHHHHH--HhhHhHHHHHHHHHH
Q 011650 280 LVYICECNGLPEVANYWKQVIK--VNDYQKTRFVNRVVS 316 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~~ 316 (480)
+.+++++.|++ .++.+.+.+ .|+.-|+.+++.+++
T Consensus 264 ~~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 264 LVQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELME 300 (308)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 99999999998 777777654 344456666666544
No 33
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.77 E-value=3.3e-17 Score=170.91 Aligned_cols=197 Identities=13% Similarity=0.154 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---CCEEEEEccC
Q 011650 12 VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE---ANIVFVSVNT 88 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~---aDvVii~Vpt 88 (480)
||.+||.+|+++ ||+|.+||+++++++.+.+.... ..+++.+.+++++++. +|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 0236778889987764 8999999986
Q ss_pred CCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCcccccc
Q 011650 89 PTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDL 168 (480)
Q Consensus 89 p~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~ 168 (480)
+ ..+.+++.++.+.+.+|++||+.||+.+..+++..+.+++.+ +.++.+|....+..+..+
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~G----i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKG----IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CeEEecCCCCCHHHHhcC-
Confidence 4 346788889999999999999999998888888777777654 345688877765444332
Q ss_pred CCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Q 011650 169 FKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED------RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE-ATG 241 (480)
Q Consensus 169 ~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~g 241 (480)
+.+|+||+ ++++++++++|+.+.... ..++++.+.+..+|+++|.+....+..+.|...+++ ++|
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G 197 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG 197 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36889996 889999999999987421 167788899999999999999999999999999999 599
Q ss_pred CCHHHHHHHh
Q 011650 242 ADVSQVSHAI 251 (480)
Q Consensus 242 id~~~v~~~~ 251 (480)
+|..++.+++
T Consensus 198 l~~~~l~~v~ 207 (459)
T PRK09287 198 LSAEEIADVF 207 (459)
T ss_pred CCHHHHHHHH
Confidence 9999998888
No 34
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.77 E-value=5.5e-17 Score=163.56 Aligned_cols=265 Identities=12% Similarity=0.037 Sum_probs=182.4
Q ss_pred ceEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh
Q 011650 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~ 61 (480)
|||+|.|.|+ -|.+||.+|+++ ||+|++||++++..+.-+ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~----------~~~l---- 64 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEEL----------WKKV---- 64 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHH----------HHHH----
Confidence 7999999994 589999999998 999999999987543200 0001
Q ss_pred cCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-HHHHHH
Q 011650 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEKI 140 (480)
Q Consensus 62 ~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~~ 140 (480)
...+++++++..+++++||+||+|+|++. .++++++.+.+.++++++|++.||+++.+. +.+.+.
T Consensus 65 ~~~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 65 EDAGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGE 130 (342)
T ss_pred HHCCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 01346777888888899999999998531 257788899999999999999999988876 566666
Q ss_pred HHhhcCCCceEEeeCCcccccCccccccCCCCeEEEEcc---CCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHH
Q 011650 141 LMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGR---ETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKL 217 (480)
Q Consensus 141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl 217 (480)
+........+ ..+.|-.. +|.....+ .++.|+. ....+++.+++++++++.++ ..+++.+.+.+..+|+
T Consensus 131 l~~~~~~~gi-~~~~p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g~~~~vk~ 202 (342)
T PRK12557 131 LRTKRKDVGI-SSMHPAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPADVVSAVAD 202 (342)
T ss_pred hcccccccCe-eecCCccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHH
Confidence 6432110111 11223211 12111111 2444431 11124788899999999986 3556677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHH
Q 011650 218 AANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWK 297 (480)
Q Consensus 218 ~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~ 297 (480)
++|.+.++.++...|...++++.|.++.++.+-+....-.+...+--..|+.|--=.-||..|+..|+...+.+..+.+.
T Consensus 203 ~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (342)
T PRK12557 203 MGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQKDLD 282 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhhhhHH
Confidence 99999999999999999999999999999888665443111111111223444433458999999999988766666777
Q ss_pred HHHHHhh
Q 011650 298 QVIKVND 304 (480)
Q Consensus 298 ~~~~~N~ 304 (480)
.++++=+
T Consensus 283 ~~~~~~~ 289 (342)
T PRK12557 283 AALEILE 289 (342)
T ss_pred HHHHHHH
Confidence 6665443
No 35
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.76 E-value=6.8e-17 Score=163.95 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=163.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC-CCCC-ChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLP-IYEP-GLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~-~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||+.+|..|+++ | +|++|.++++.++.+++.+.. .+.+ +. . ...++.+++|+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~-----l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDV-V-----LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-c-----cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 688999999999999985432 2222 11 0 12457889999888899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||+. .++++++++.++++++++|+..+ .++.++.+.+.+.+++...+..+.+..+|.
T Consensus 78 aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 99999999852 46889999999998887665443 567777666767776543223456778888
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHH-----------------
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAAN----------------- 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N----------------- 220 (480)
+..+... ..+..+++++. +++..+.++++|+.-. ...+...|+...||.|.+.|
T Consensus 143 ~a~ev~~----g~~t~~via~~----~~~~~~~v~~lf~~~~-~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n 213 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMP----DQHLATRLSPLFRTRR-FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGEN 213 (341)
T ss_pred HHHHHHc----CCCeEEEEEeC----CHHHHHHHHHHhCCCC-EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 7664221 12344667776 4778899999998743 12445579999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011650 221 AFLAQRISSVNAMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~ 253 (480)
+..++....++|+.++++.+|.+++++....+.
T Consensus 214 ~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 214 TRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 334556678999999999999999988876654
No 36
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.75 E-value=6.7e-17 Score=164.24 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=165.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCC-CChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYE-PGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e-~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++. .+.+++....+.. .+.+.. ...++++++++++ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARI-GDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHH-HHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 68999999999999999999998 999999999754 4667664333221 111110 0123466677774 57899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+..+....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 256778888888888877654 4566666666666543210 000011111233
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHH-------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQR------------- 226 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (480)
.||...... ..++.++.. +..+.+.++|+..+. ...+..|+..+.|.|++.|++..+.
T Consensus 138 ~pg~~~~~~--~g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQGT--SGALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEecC--CCceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 445442211 123455532 346788899987652 4566789999999999999755444
Q ss_pred -------HHHHHHHHHHHHHcCCCHHHHHHHhcCCC--------C----CCCccccCCCCccccchhhhHH---------
Q 011650 227 -------ISSVNAMSALCEATGADVSQVSHAIGFDS--------R----IGPKFLNASVGFGGSCFQKDIL--------- 278 (480)
Q Consensus 227 -------ia~~nE~~~l~~~~gid~~~v~~~~~~~~--------~----i~~~~~~pg~g~gG~c~~kD~~--------- 278 (480)
...+.|...++++.|+++..+.++..... . +.......... ....+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 37899999999999998654332211110 0 00000100110 1357999999
Q ss_pred ---HHHHHHHHCCCchhhhHHHH
Q 011650 279 ---NLVYICECNGLPEVANYWKQ 298 (480)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~~ 298 (480)
++++.|+++|++ .++.+.
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~~ 308 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNAR 308 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHHH
Confidence 799999999998 554443
No 37
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.3e-16 Score=159.24 Aligned_cols=212 Identities=19% Similarity=0.196 Sum_probs=146.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-----HhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-----QCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-----~~~~~~l~~t~d~~~a 75 (480)
+.||+|||+|.||..+|.+|+.+ |++|++||++++..+.+.+... ..++.+.+ ....++++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHH
Confidence 36899999999999999999998 9999999999987765432100 00111100 0112467889999988
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCceEEe
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINFQIL 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+++||+|+.|||+. .+++ ...++++.+.+++++ |+.+||.+. ...+++..+..... +.+|
T Consensus 81 v~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~Hf--- 142 (321)
T PRK07066 81 VADADFIQESAPER-----------EALK--LELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHP--- 142 (321)
T ss_pred hcCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEec---
Confidence 99999999999863 4555 667789999999988 445556532 22334443322111 1121
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
|+|....|- -.|| .+..| ++++.+.+.++++.+++ .++.+. -+...++.| .+..++++|+
T Consensus 143 fnP~~~~pL---------VEVv-~g~~T--~~e~~~~~~~f~~~lGk-~pV~v~----kd~pGFi~N---Rl~~a~~~EA 202 (321)
T PRK07066 143 FNPVYLLPL---------VEVL-GGERT--APEAVDAAMGIYRALGM-RPLHVR----KEVPGFIAD---RLLEALWREA 202 (321)
T ss_pred CCccccCce---------EEEe-CCCCC--CHHHHHHHHHHHHHcCC-EeEecC----CCCccHHHH---HHHHHHHHHH
Confidence 455544331 1344 44434 79999999999999874 455542 134457778 5788999999
Q ss_pred HHHHHHcCCCHHHHHHHhcCCCC
Q 011650 234 SALCEATGADVSQVSHAIGFDSR 256 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~~~~~ 256 (480)
..+.++..++++++..++..++.
T Consensus 203 ~~lv~eGvas~edID~a~~~g~g 225 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGAG 225 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCCC
Confidence 99999999999999999886653
No 38
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=4.7e-17 Score=161.55 Aligned_cols=212 Identities=19% Similarity=0.276 Sum_probs=147.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChH-----HHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLE-----EVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~-----~~~~~~~~~~l~~t~d~~~a 75 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++...+..+++.+ +.-.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57899999999999999999998 999999999999998876532111111100 00000012467889999888
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--CCceEE
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--GINFQI 152 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (480)
+++||+||+|+|++. + ....++.++.+.+++++++ +++||+++.... +.++.... |.+|
T Consensus 79 ~~~aD~Vi~avpe~~-----------~--~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~---~~~~~~~r~~g~h~-- 140 (288)
T PRK09260 79 VADADLVIEAVPEKL-----------E--LKKAVFETADAHAPAECYIATNTSTMSPTEIA---SFTKRPERVIAMHF-- 140 (288)
T ss_pred hcCCCEEEEeccCCH-----------H--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH---hhcCCcccEEEEec--
Confidence 999999999998642 1 2255677888889999876 788999886533 33322111 2222
Q ss_pred eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 153 LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
++|....+ + ..|+++..+ ++++++++.++++.++. .++++. +...++.| .+..+++||
T Consensus 141 -~~Pv~~~~------L----ve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~-----d~~Gf~~n---Rl~~~~~~e 198 (288)
T PRK09260 141 -FNPVHKMK------L----VELIRGLET--SDETVQVAKEVAEQMGK-ETVVVN-----EFPGFVTS---RISALVGNE 198 (288)
T ss_pred -CCCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEec-----CcccHHHH---HHHHHHHHH
Confidence 25653321 1 245666433 58899999999999874 455554 44456677 456789999
Q ss_pred HHHHHHHcCCCHHHHHHHhcCC
Q 011650 233 MSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~~~ 254 (480)
...+.++...+++++..++...
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHhC
Confidence 9999988768999999988654
No 39
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.73 E-value=2.9e-16 Score=158.20 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=162.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC--------CeEEEEeC-----CHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS--------IEVAVVDI-----SVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G--------~~V~~~D~-----~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
||+|||.|.||+++|..|+++ | |+|++|.+ +++..+.+++.+ ++.+.|+.. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 777888888753 344444432 1346889
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcc--cHHHHHHHHHhhc
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVK--TAEAIEKILMHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~g--t~~~l~~~l~~~~ 145 (480)
++|+++++++||+||++||+ ..++++++++.++++++++++..+. +.+. +...+.+++++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 3467889999999988887776664 4555 6666777776644
Q ss_pred CCCceEEeeCCcccccCccccccCCCCeEEEEccCCcch----HHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-----
Q 011650 146 RGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEG----MKAIKALKDVYAHWVPEDRILCTNLWSAEVSK----- 216 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~----~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K----- 216 (480)
+..+.++++|.+..+-.. ..|..+++++. + .+..+.++++|+.-. ...+...|+...|+..
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~----~~~~~~~~a~~~~~lf~~~~-frv~~s~Dv~GvEl~galKNv 207 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYR----DPADFDVDARVLKALFHRPY-FRVNVVDDVAGVEIAGALKNV 207 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeC----CCcchHHHHHHHHHHhCCCC-EEEEEcCCcccchhhHHHHHH
Confidence 346778899988765321 34667778876 4 678899999998632 1233346776666544
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHhcC
Q 011650 217 ------------LAANAFLAQRISSVNAMSALCEATGADVS--QVSHAIGF 253 (480)
Q Consensus 217 ------------l~~N~~~~~~ia~~nE~~~l~~~~gid~~--~v~~~~~~ 253 (480)
+-.|+..++....++||.++++.+|.+++ +++...+.
T Consensus 208 ~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 208 VAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 33577778888899999999999998766 66655543
No 40
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=3.8e-16 Score=158.41 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=163.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcC-CCCCCCCChHHHHHHhcCCCEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVP-----RINAWNSD-QLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++. .++.+.|+.. ...++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999986 48888864 3555666653 2357899
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh--hCCCCcEEEEecC-CCcccH--HHHHHHHHh
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD--VSKSDKIVVEKST-VPVKTA--EAIEKILMH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~--~l~~~~iVi~~ST-v~~gt~--~~l~~~l~~ 143 (480)
++|+++++++||+|+++||+ ..+.++++++.+ +++++++||..+. +.+.+. ..+.+++++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 246788999988 7777777765553 444443 445666655
Q ss_pred hcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-------
Q 011650 144 NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK------- 216 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------- 216 (480)
.. +..+.++++|.+..+-.. ..|..+++++. +.+..+.++++|+.-. ...+...|+...|+..
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~----~~~~a~~~~~lf~~~~-frvy~s~Dv~GvEl~galKNviA 218 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCE----DKDDALIWQRLFDRPY-FKINCVPDVIGVEVCGALKNIIA 218 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCc-EEEEEcCCcccchhhHHHHHHHH
Confidence 43 235777899988765321 34667888887 5888899999998632 1233446766655543
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHhcC
Q 011650 217 ----------LAANAFLAQRISSVNAMSALCEATGA--DVSQVSHAIGF 253 (480)
Q Consensus 217 ----------l~~N~~~~~~ia~~nE~~~l~~~~gi--d~~~v~~~~~~ 253 (480)
+-.|+..++....++||.++++.+|. ++++++...+.
T Consensus 219 Ia~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~ 267 (365)
T PTZ00345 219 LAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGL 267 (365)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchH
Confidence 44678888888899999999999974 88888876664
No 41
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=8.6e-16 Score=141.92 Aligned_cols=210 Identities=16% Similarity=0.207 Sum_probs=152.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH---hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH---VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
|+|++||||.||..++.+|.+. ||+|++||+|++.++.+.... .+.++++++. +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 7999999999999999999998 999999999999999988632 2223333332 346
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
..+|.++||... .+.++++++++.|.++.+||+-...-..-+.+-.+.+++.+ .+| +.+-..
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg--i~f--lD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG--IHF--LDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC--CeE--EeccCC
Confidence 689999998531 24788999999999999999754222111222233455443 333 232221
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE--DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
... ......-.+||||+ +++.+++.++|+.+.++ .-.+++..+++...|+++|-.-.-.++...|-..+
T Consensus 122 GG~----~G~~~G~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGV----WGAERGYCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCc----hhhhcCceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 111 11222335789996 88999999999987652 23456788999999999999888888888999999
Q ss_pred HHHc--CCCHHHHHHHhcCCCCCCC
Q 011650 237 CEAT--GADVSQVSHAIGFDSRIGP 259 (480)
Q Consensus 237 ~~~~--gid~~~v~~~~~~~~~i~~ 259 (480)
.+.. ..|.++|.+..+..+-|++
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIrS 217 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIRS 217 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHHH
Confidence 8874 7889999999999876654
No 42
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.72 E-value=2.5e-16 Score=167.36 Aligned_cols=208 Identities=19% Similarity=0.199 Sum_probs=142.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-------CCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-------QLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-------~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+|||+|||+|.||.++|..|+++ |++|++||+++++.+.+.+. ...+.... + ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~---~---~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAP---L---PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccch---h---hhhhceEeeCCHH
Confidence 47999999999999999999998 99999999999988765421 00000000 0 0124578899998
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEe
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQIL 153 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
+++++||+||+|+|+.. +++ ...++++.+.+++++ |+.+||..+..+ .+.+.+...+ -.+.
T Consensus 76 ea~~~aD~Vieavpe~~-----------~vk--~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~----r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DLK--RRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPE----RLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HHH--HHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcc----eEEE
Confidence 88999999999998642 222 456677888888776 456677765543 4444443221 2334
Q ss_pred eCC---cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH-HHHHHH
Q 011650 154 SNP---EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL-AQRISS 229 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~-~~~ia~ 229 (480)
.+| ....+ -..++++..+ +++..+++.++|+.++. .+++.. |.+.|... .+..++
T Consensus 137 ~hP~nP~~~~~----------Lvevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 137 AHPYNPVYLLP----------LVELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLLEAL 195 (495)
T ss_pred EecCCCcccCc----------eEEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHHHHH
Confidence 444 33222 1245666533 68899999999999874 445443 34444433 345666
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCC
Q 011650 230 VNAMSALCEATGADVSQVSHAIGFDSR 256 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~~~~~ 256 (480)
++|+..++++.|+|++++.++++..+.
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~g 222 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSFG 222 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhccC
Confidence 799999999999999999999987753
No 43
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.71 E-value=4.5e-15 Score=149.98 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=143.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++.+++.+ ...+.++.. ...++++++++.+++ ..+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999998 999999999999999998743 111112210 113567888888766 589
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCCCcEEE-EecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKSDKIVV-EKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
|+||+|||+. .+.++++++.+ ++.+++.|+ ....+...+.....+.+.+..+...+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999852 36788899988 887776554 333443332212223333322112334455776
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH---------------
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF--------------- 222 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~--------------- 222 (480)
+..+... ..+..+++++. +.+..+.+.++|+.-. .......|+...+|.|++.|++
T Consensus 138 ~a~~~~~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~-~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQ----NETLGSSLISKLSNEN-LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred HHHHHHc----CCCcEEEEecC----CHHHHHHHHHHHCCCC-eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 5433211 13445666665 3556777888887643 1234457999999999998753
Q ss_pred --HHHHHHHHHHHHHHHHHcCC--CHHHHH
Q 011650 223 --LAQRISSVNAMSALCEATGA--DVSQVS 248 (480)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~gi--d~~~v~ 248 (480)
..+....++|+..+++.+|. ++++++
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 238 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLI 238 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhh
Confidence 23345688999999999987 778775
No 44
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.69 E-value=1.2e-15 Score=161.90 Aligned_cols=203 Identities=18% Similarity=0.210 Sum_probs=143.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH------------cCCCCCCCCChHHHHHHhcCCCEEEe
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN------------SDQLPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~g~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||.+||.+|+.+ |++|++||++++.+++.. +|... +...+.. ..+++.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~--~~~~~~~-----~~~i~~~ 78 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLT--AEQADAA-----LARLRPV 78 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHH-----HhCeEEe
Confidence 5799999999999999999998 999999999999988742 12111 1111111 2468899
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+++++ +.+||+||.|||+.. +++ ..++.++...+++++++ +++||+++.. ++..+.....
T Consensus 79 ~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~ 141 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVA 141 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEE
Confidence 99976 789999999998642 333 44567788888889988 5889998852 4333322111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHH
Q 011650 147 GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| ++|....+ + ..|+++..+ ++++++.+.++++.+++ .++++.+... ++.|.+ .
T Consensus 142 G~hf---f~Pa~v~~------L----vEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nrl---l 197 (507)
T PRK08268 142 GLHF---FNPVPLMK------L----VEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG-----FIVNRA---A 197 (507)
T ss_pred EEee---cCCcccCe------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC-----hHHHHH---H
Confidence 3333 34433221 1 235666433 68999999999999875 5666665322 566643 3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 227 ISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
.++++|...++++.++|++++.+++...
T Consensus 198 ~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 198 RPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 5699999999999999999999998654
No 45
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.67 E-value=3.1e-15 Score=158.48 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=142.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHHHhcCCCEEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS------------DQLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
++||+|||+|.||.+||.+|+.+ ||+|++||++++.+++..+ |... +...+.. ..+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~--~~~~~~~-----~~~i~~ 75 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLT--AEECERT-----LKRLIP 75 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHH-----HhccEE
Confidence 46899999999999999999998 9999999999998876422 1110 0011111 246889
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC-
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~- 146 (480)
++++++ +.+||+||.|||+. .+++ +.++.++.+.+++++++. ++||+++. +++..+.....
T Consensus 76 ~~~~~~-l~~aDlVIEav~E~-----------~~vK--~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~ 138 (503)
T TIGR02279 76 VTDLHA-LADAGLVIEAIVEN-----------LEVK--KALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERV 138 (503)
T ss_pred eCCHHH-hCCCCEEEEcCcCc-----------HHHH--HHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccce
Confidence 999976 78999999999863 2333 556777888888888764 55666654 23333332211
Q ss_pred -CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHH
Q 011650 147 -GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQ 225 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| ++|....+ + ..|++|..| ++++++.+.++++.+++ .++++.+... ++.|.+
T Consensus 139 ~G~HF---f~Papv~~------L----vEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nrl--- 194 (503)
T TIGR02279 139 AGLHF---FNPAPVMA------L----VEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPG-----FIVNRV--- 194 (503)
T ss_pred EEEec---cCccccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCC-----cHHHHH---
Confidence 3333 34433221 1 235677544 68999999999999874 5666665332 356633
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 226 RISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
..++++|...+.++.+++++++.+++...
T Consensus 195 ~~~~~~EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 195 ARPYYAEALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 35799999999999999999999999754
No 46
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.67 E-value=1.2e-14 Score=145.32 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=141.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ ||+|+++++ +++++.+++.+..+.+.+.+.. -....+++.+++...+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999998 999999999 8888888875443332211100 012345666665689999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc-cc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF-LA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (480)
||+|+|++. ++++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~~---------------~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAYQ---------------LDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEecccC---------------HHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 999998642 467788888888888776643 334555555655553321 01123333333 34
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH------------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF------------------ 222 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~------------------ 222 (480)
+|..... .+.++.+|..+.. ..+..+.+.++|...+. ......|+..+.|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 5554333 4456778864322 23456667777776532 234567999999999999853
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCCH
Q 011650 223 ---LAQRISSVNAMSALCEATGADV 244 (480)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~gid~ 244 (480)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2455678999999999999864
No 47
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.66 E-value=2.6e-14 Score=140.89 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=130.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|.++ |+ +|++||+++++.+.+.+.. ....+++++++ .+|
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~g------------------~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALELG------------------LVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHCC------------------CCcccCCHHHH-hcC
Confidence 6999999999999999999988 65 7999999999888765421 11123456664 459
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc-
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|||.. .+.++++++.+ ++++++|++.+++... +.+.+.+... .. ++..+|..
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~----i~~~~~~~~~-~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAK----IIESVPKHIR-KN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHH----HHHHHHHhcC-CC-EEecCCcCc
Confidence 9999999853 24667788888 8889999876655433 3333332211 12 35556743
Q ss_pred ---cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 ---LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
.+|..+..+++....+++... ...+++..+.+.++++.++. .++..+..+..+.++++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~~~-~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLCDV-EKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 345444444443333333221 22257788999999999863 345555667789999999987755555544331
Q ss_pred HHHHcCCCHHHHHHHhc
Q 011650 236 LCEATGADVSQVSHAIG 252 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~ 252 (480)
.+.|..++.+..+
T Consensus 195 ----~~~~~~~~~~~~~ 207 (275)
T PRK08507 195 ----KEEDERNIFDLAG 207 (275)
T ss_pred ----hcCChHHHHhhcc
Confidence 2555555555444
No 48
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.66 E-value=9.2e-15 Score=144.43 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=128.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCE-EEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNL-FFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.++|..|.++ |++|++||++++..+.+.+.. .+ ..+++.+ ++.+||
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g------------------~~~~~~~~~~-~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG------------------LVDEASTDLS-LLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC------------------CcccccCCHh-HhcCCC
Confidence 7999999999999999999998 999999999999888776421 11 2334443 578999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc--
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF-- 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-- 158 (480)
+||+|+|.. .+.++++++.++++++++|++.+++.+...+.+.+... . ++..+|-.
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999999842 24567788888899899998888776555444332211 1 34445533
Q ss_pred --cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 --LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 159 --~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.....+..+++....+++ .+....+++..+.+.++++.++. .++..+..+..+.++++.|....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l-~p~~~~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVL-TPTENTDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEE-ccCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333333344444333333 22223367889999999999863 34445666789999999998776666665544
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.1e-14 Score=144.39 Aligned_cols=214 Identities=15% Similarity=0.106 Sum_probs=140.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC---CCCCCC----ChHHHHHHhcCCCEEEecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ---LPIYEP----GLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~---~~~~e~----~l~~~~~~~~~~~l~~t~d~~ 73 (480)
|+||+|||+|.||.++|..|+.+ |++|++||++++.++++++.. .+...+ ..++... ....++++++|++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE-AALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH-HHHcCeEEeCCHH
Confidence 47999999999999999999998 999999999999887765421 000000 0000000 0125788999999
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcCCCceEE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSRGINFQI 152 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+++++||+||+|+|+.. ....+.++++.+.++++++| .++||.++.. +.+.+... .. ++
T Consensus 80 ~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~---~r-~v 139 (287)
T PRK08293 80 EAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRP---EK-FL 139 (287)
T ss_pred HHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCc---cc-EE
Confidence 88999999999998642 23467788899999988888 4556665532 22222211 11 22
Q ss_pred eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 153 LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..+| ..|.. ..+--.++.+.. +++++.+.+.++++.++. .++.+. .+...++.| .+..+++||
T Consensus 140 g~Hf--~~p~~-----~~~lvevv~~~~--t~~~~~~~~~~~~~~~Gk-~pv~v~----~d~pgfi~n---Ri~~~~~~e 202 (287)
T PRK08293 140 ALHF--ANEIW-----KNNTAEIMGHPG--TDPEVFDTVVAFAKAIGM-VPIVLK----KEQPGYILN---SLLVPFLSA 202 (287)
T ss_pred EEcC--CCCCC-----cCCeEEEeCCCC--CCHHHHHHHHHHHHHcCC-eEEEec----CCCCCHhHH---HHHHHHHHH
Confidence 2232 11111 011112333332 368999999999999864 455443 123345566 456788999
Q ss_pred HHHHHHHcCCCHHHHHHHhcCC
Q 011650 233 MSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+..+.++..++++++..++...
T Consensus 203 a~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 203 ALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999889999999988654
No 50
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=2.4e-14 Score=142.36 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=135.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+|.||.++|..|+.+ |++|++||++++.++.+.+.. ..+.+...+.. ..+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAA-----LARISTATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhCeEeeCC
Confidence 5899999999999999999998 999999999999887743210 00111011111 145788889
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
+++ +++||+||+|||+.. ......++++.+.++++++|+ ++||+++. .+++.+..... |.
T Consensus 78 ~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~ 140 (292)
T PRK07530 78 LED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGI 140 (292)
T ss_pred HHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEe
Confidence 865 899999999998642 123566788999999998876 56666643 34443322111 11
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| +.|....++. .++.| ..+ +++.++.+.++++.+++ .+++..+.. .++.++ +..+
T Consensus 141 h~---~~p~~~~~~v---------ei~~g-~~t--~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nR----l~~~ 196 (292)
T PRK07530 141 HF---MNPVPVMKLV---------ELIRG-IAT--DEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNR----ILLP 196 (292)
T ss_pred ec---cCCcccCceE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHH----HHHH
Confidence 11 2333333221 24333 222 58899999999999874 456555433 344444 4577
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 229 SVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++||...+.++.-.+++++..++...
T Consensus 197 ~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 197 MINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 88999999988667899999988544
No 51
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=3.6e-14 Score=142.42 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=135.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC---CC-CCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQL---PI-YEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~---~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++... .. .+.+... ...+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIAS----AGMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHH----HHhhceEEeCCHHHHh
Confidence 47899999999999999999998 9999999999999888765210 00 0000000 0114577888988888
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++||+||+|||... .....++..+.+.++++++|+ ++|.... ...+++.+.... . ++..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998542 123556777877777776654 3444333 334544443211 1 122222
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT-NLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
. .|.... .+ ..++.+..+ +++..+.+.++++.++. .++... +.... +++|. ..++++|...
T Consensus 139 ~--~p~~~~-~l----~~i~~g~~t--~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~----i~nr~----~~~~~~Ea~~ 200 (311)
T PRK06130 139 F--TPADVI-PL----VEVVRGDKT--SPQTVATTMALLRSIGK-RPVLVKKDIPGF----IANRI----QHALAREAIS 200 (311)
T ss_pred C--CCCccC-ce----EEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEEcCCCCCc----HHHHH----HHHHHHHHHH
Confidence 1 111110 01 123444322 58899999999999863 345443 32211 55554 4578999999
Q ss_pred HHHHcCCCHHHHHHHhcCC
Q 011650 236 LCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~~~ 254 (480)
++++.|+|++++.+++...
T Consensus 201 l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 201 LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHcCCCCHHHHHHHHHhc
Confidence 9999999999999999754
No 52
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=2.3e-14 Score=141.80 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=136.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH---------hcCCCEEEecC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ---------CRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~---------~~~~~l~~t~d 71 (480)
|+||+|||+|+||.++|..|+.+ |++|+++|+++++++...+.. +..++.+.+. ....++++++|
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATI----TKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 46899999999999999999998 999999999999886322100 0001111100 01136888899
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCc
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GIN 149 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~ 149 (480)
+++ +++||+||+|+|.. .++ -.+.++.+.++++++++|+ ++|.....+ .+++.+..... +.+
T Consensus 77 ~~~-~~~aDlVi~av~e~-----------~~~--k~~~~~~l~~~~~~~~il~-s~ts~~~~~-~la~~~~~~~r~ig~h 140 (282)
T PRK05808 77 LDD-LKDADLVIEAATEN-----------MDL--KKKIFAQLDEIAKPEAILA-TNTSSLSIT-ELAAATKRPDKVIGMH 140 (282)
T ss_pred HHH-hccCCeeeeccccc-----------HHH--HHHHHHHHHhhCCCCcEEE-ECCCCCCHH-HHHHhhCCCcceEEee
Confidence 865 89999999999742 222 2578888999999998873 333333332 45444432211 111
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011650 150 FQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
| +.|....++. .++-| ..+ +++..+.+.++++.++. .++.+.+ ...++.| .+..++
T Consensus 141 ~---~~P~~~~~~v---------ev~~g-~~t--~~e~~~~~~~l~~~lGk-~pv~~~d-----~~g~i~~---Ri~~~~ 196 (282)
T PRK05808 141 F---FNPVPVMKLV---------EIIRG-LAT--SDATHEAVEALAKKIGK-TPVEVKN-----APGFVVN---RILIPM 196 (282)
T ss_pred c---cCCcccCccE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eeEEecC-----ccChHHH---HHHHHH
Confidence 1 2343333321 23323 323 68999999999999874 4555543 3345666 577899
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 230 VNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+||...+.++.-.+++++..++..+
T Consensus 197 ~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 197 INEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 9999999998878999999998644
No 53
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.62 E-value=2.3e-15 Score=135.85 Aligned_cols=150 Identities=25% Similarity=0.329 Sum_probs=108.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||.|.||+++|..|+++ ||+|++|.++++.++.+++.+ .+.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 799999999999999999999 999999999999999999743 333333321 12468899999999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-CcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||+. .+++.++++.++++++++++..+.. ..++...+.+.+++..+...+.++++|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999863 2578899999999999988876643 4566566667776654323388889998876
Q ss_pred cCccccccCCCCeEEEEcc
Q 011650 161 EGTAINDLFKPDRVLIGGR 179 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~ 179 (480)
+-. ...|..+++++.
T Consensus 138 Ei~----~~~pt~~~~as~ 152 (157)
T PF01210_consen 138 EIA----EGKPTAVVIASK 152 (157)
T ss_dssp HHH----TT--EEEEEEES
T ss_pred HHH----cCCCeEEEEEec
Confidence 532 134566778876
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.62 E-value=3.9e-14 Score=140.82 Aligned_cols=210 Identities=15% Similarity=0.123 Sum_probs=136.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH---------hcCCCEEEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ---------CRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~---------~~~~~l~~t~d~ 72 (480)
.||+|||+|.||.++|..|+.+ |++|++||++++.++...+.... ...+++.++.+ ....++.+++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~-~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIES-GPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHh-hhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 5899999999999999999998 99999999999988754321000 00011111100 011356788887
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCce
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINF 150 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
+ ++++||+||+|+|++. ....++++++.+.++++++++. +|.. -+..+++..+..... |.+|
T Consensus 81 ~-~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~S-~tsg-~~~~~la~~~~~~~r~ig~hf 144 (291)
T PRK06035 81 E-SLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIAS-NTSG-IMIAEIATALERKDRFIGMHW 144 (291)
T ss_pred H-HhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEE-cCCC-CCHHHHHhhcCCcccEEEEec
Confidence 4 5899999999998642 1236677888888888887752 2322 233445444432211 1111
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+.|....++. .++ .+..+ ++++.+.+.++++.+++ .++.+.+....-..|+..| ++
T Consensus 145 ---~~P~~~~~~v---------Ev~-~g~~T--~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~~~--------~~ 200 (291)
T PRK06035 145 ---FNPAPVMKLI---------EVV-RAALT--SEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFIEG--------WL 200 (291)
T ss_pred ---CCCcccCccE---------EEe-CCCCC--CHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHHHH--------HH
Confidence 3443333221 233 33333 68999999999999874 5666777666666666554 67
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 231 NAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
||+..+.++.-++++++..++...
T Consensus 201 ~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 201 LEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhhc
Confidence 899999988668999999988543
No 55
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=3e-14 Score=141.05 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=138.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHHHhcCCCEEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS------------DQLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|.||+|||+|.||.++|..|+.+ ||+|++||++++.++...+ |.. .+...+. ...++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~-----~~~~l~~ 75 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKL--TERERDA-----ALARLRF 75 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccC--ChhhHHH-----HHhCeEe
Confidence 35899999999999999999998 9999999999998876221 111 1111111 1257889
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhC-CCCcEEEEecCC-CcccHHHHHHHHHhhcC
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS-KSDKIVVEKSTV-PVKTAEAIEKILMHNSR 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv-~~gt~~~l~~~l~~~~~ 146 (480)
++|++ ++++||+||.|+|.. .+++ ...+..+.+.+ +++++++..||. ++.. ++..+.....
T Consensus 76 ~~~~~-~~~~~d~ViEav~E~-----------~~~K--~~l~~~l~~~~~~~~~il~snTS~~~~~~---la~~~~~~~r 138 (286)
T PRK07819 76 TTDLG-DFADRQLVIEAVVED-----------EAVK--TEIFAELDKVVTDPDAVLASNTSSIPIMK---LAAATKRPGR 138 (286)
T ss_pred eCCHH-HhCCCCEEEEecccC-----------HHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcc
Confidence 99995 489999999999863 3344 56677888887 788888765544 4332 2222221111
Q ss_pred --CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHh-ccCCCCeEEeCCchhHHHHHHHHHHHH
Q 011650 147 --GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYA-HWVPEDRILCTNLWSAEVSKLAANAFL 223 (480)
Q Consensus 147 --g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~ae~~Kl~~N~~~ 223 (480)
|.+| ++|....+.. .|+.|.. + ++++++++.+++. .+++ .++.+.+ ...++.|
T Consensus 139 ~~g~hf---~~P~~~~~lv---------Elv~~~~-T--~~~~~~~~~~~~~~~lgk-~pv~v~d-----~pGfi~n--- 194 (286)
T PRK07819 139 VLGLHF---FNPVPVLPLV---------ELVPTLV-T--SEATVARAEEFASDVLGK-QVVRAQD-----RSGFVVN--- 194 (286)
T ss_pred EEEEec---CCCcccCceE---------EEeCCCC-C--CHHHHHHHHHHHHHhCCC-CceEecC-----CCChHHH---
Confidence 2222 3444333321 3555543 3 6899999999988 4664 4555543 3345666
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 224 AQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 224 ~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
.+..+++||...+.++...+++++..++...
T Consensus 195 Ri~~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 195 ALLVPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999999999998778999999998644
No 56
>PLN02712 arogenate dehydrogenase
Probab=99.61 E-value=2.5e-12 Score=140.48 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=102.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+ -++..++++++.+ .+||
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7999999999999999999998 8999999998554 22221 1234566777744 5699
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHH-hhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-DVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||. ..+.++++++. ++++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999983 23567777775 67888999998776654333334333322 222 566777664
Q ss_pred ccCccccccCCCCeEEEE---ccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011650 160 AEGTAINDLFKPDRVLIG---GRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS 211 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG---~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
.+- ...++.....++.+ +. .....+.++.+.++++.++ ..+..++++.
T Consensus 172 ~e~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~lG--a~v~~ms~ee 222 (667)
T PLN02712 172 PQS-AKHGWDGLRFVYEKVRIGN-EELRVSRCKSFLEVFEREG--CKMVEMSCTE 222 (667)
T ss_pred Ccc-ccchhccCcEEEeeccCCC-ccccHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 331 11111111222221 22 1112345677789999875 4666666543
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.60 E-value=1.2e-13 Score=137.73 Aligned_cols=207 Identities=15% Similarity=0.229 Sum_probs=134.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH---------HhcCCCEEEecC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK---------QCRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~---------~~~~~~l~~t~d 71 (480)
|+||+|||+|.||.++|..|+.+ |++|++||+++++++...+.. +..++.+.+ ....++++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSI----SSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 35799999999999999999998 999999999998876432210 000001100 001145677888
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
.+ ++++||+||+|||+.. ++ ...+++++.+.++++++|+ ++||+++.. +++.+..... +.
T Consensus 78 ~~-~~~~aD~Vieav~e~~-----------~~--k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~ 140 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESE-----------DL--KKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGM 140 (295)
T ss_pred HH-HhCCCCEEEEcCccCH-----------HH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEE
Confidence 75 5899999999998632 22 3566778888899988875 677776554 3333322111 11
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| ++|....+. ..++++..+ +++..+++.++++.++. .++++.+.. .++.| .+..+
T Consensus 141 h~---~~pp~~~~l----------veiv~g~~t--~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~n---ri~~~ 196 (295)
T PLN02545 141 HF---MNPPPIMKL----------VEIIRGADT--SDEVFDATKALAERFGK-TVVCSQDYP-----GFIVN---RILMP 196 (295)
T ss_pred ec---cCCcccCce----------EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHH---HHHHH
Confidence 11 233222111 123444322 68899999999999874 445544432 24455 45677
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 229 SVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++||...+.++...+++++..++...
T Consensus 197 ~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 197 MINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 89999999999889999999887644
No 58
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.59 E-value=6.3e-14 Score=137.87 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=145.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|+||+|||.|.||..+|..++.. |++|+++|++++.+++..+.. ..+.+...+. ..++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~-----~l~~i~~~~ 75 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADA-----ALARITPTT 75 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH-----HHhhccccC
Confidence 57999999999999999999996 899999999987766544210 0111111111 225678888
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++. ++++||+||.+|+. +.+++ +.+++++.+++++++++ .+.||+++... +..+..... |
T Consensus 76 ~~~-~l~~~DlVIEAv~E-----------~levK--~~vf~~l~~~~~~~aIlASNTSsl~it~i---a~~~~rper~iG 138 (307)
T COG1250 76 DLA-ALKDADLVIEAVVE-----------DLELK--KQVFAELEALAKPDAILASNTSSLSITEL---AEALKRPERFIG 138 (307)
T ss_pred chh-HhccCCEEEEeccc-----------cHHHH--HHHHHHHHhhcCCCcEEeeccCCCCHHHH---HHHhCCchhEEE
Confidence 887 59999999999986 34555 78999999999999988 56677776542 222211111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..|| .+.-| ++++++++.++...+++ .++...| ...++.| .+..
T Consensus 139 ~HF---fNP~~~m~L---------VEvI-~g~~T--~~e~~~~~~~~~~~igK-~~vv~~D-----~pGFi~N---Ril~ 194 (307)
T COG1250 139 LHF---FNPVPLMPL---------VEVI-RGEKT--SDETVERVVEFAKKIGK-TPVVVKD-----VPGFIVN---RLLA 194 (307)
T ss_pred Eec---cCCCCccee---------EEEe-cCCCC--CHHHHHHHHHHHHHcCC-CCEeecC-----CCceehH---hHHH
Confidence 333 466544431 1344 44433 68999999999999874 4444443 3346777 5678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++++|+..+.++..+++++|..++...
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999999999999999865
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.59 E-value=1e-12 Score=137.50 Aligned_cols=202 Identities=18% Similarity=0.216 Sum_probs=139.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||..+|..|.++ |++|+++|+++++.+.+... .++.++++.++++.+||
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998876554431 12355677777889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.....+.+.+.+.. +.. ++..+|.+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999999842 346778889999999999999888766666666554432 222 355567653
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|... .+....+++. +....+++..+.+.++|+.++ ..+..++++ +.-+++.++....++.+...+.. +.++
T Consensus 121 p~~~---~~~g~~~il~-p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~~~ 191 (437)
T PRK08655 121 PRTP---SLKGQVVILT-PTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LKRL 191 (437)
T ss_pred CCCc---ccCCCEEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 2221 1222233332 222225778899999999875 456666554 66777777777777666665544 4667
Q ss_pred CCCHHHHHHHhc
Q 011650 241 GADVSQVSHAIG 252 (480)
Q Consensus 241 gid~~~v~~~~~ 252 (480)
|.|..+....++
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888777654443
No 60
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.52 E-value=4.2e-13 Score=148.29 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=143.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC----------CCCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD----------QLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. .+++++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGV-----LSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 46899999999999999999998 99999999999887642211 001111111111 25799999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.|||. +.+++ +++++++.+++++++++ .++||+++.. ++..+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E-----------~l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVE-----------NPKVK--AAVLAEVEQKVREDTILASNTSTISISL---LAKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccC-----------cHHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCCccEEE
Confidence 9965 8999999999986 34555 78999999999999988 4556666553 3332222111 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++.+.+..+++.+++ .++.+. +...++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------VEvv~g-~~T--~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfv~n---Ri~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMPL---------VEVIRG-EKT--SDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (715)
T ss_pred Eec---CCcccccce---------EEeeCC-CCC--CHHHHHHHHHHHHHhCC-ceEEec-----CcCchhHH---HHHH
Confidence 333 455443321 135544 333 68999999999998874 566654 45567888 4577
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+++||+..+.++. +++++|..++...
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~~ 530 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEKQ 530 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHhh
Confidence 8999999998865 9999999998643
No 61
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.51 E-value=2e-12 Score=126.24 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=145.1
Q ss_pred ceEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHH-----HHcCCCCCCCCChHH
Q 011650 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVPRINA-----WNSDQLPIYEPGLEE 56 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~-----l~~g~~~~~e~~l~~ 56 (480)
|||+|.|.|+ -|.+||.+|+++ ||+|++||+++++.+. +.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 7999999994 589999999998 9999999999876532 332
Q ss_pred HHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 57 VVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+...++++.+++++||+||+|+|++ ..+++++.++.+++++|++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 13456778888899999999999864 234666788999999999999999999988765
Q ss_pred -HHHHHHhhcCCCceEE-eeCCcccccCccccccCCCCeEEEEccC----CcchHHHHHHHHHHHhccCCCCeEEeC-Cc
Q 011650 137 -IEKILMHNSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRE----TPEGMKAIKALKDVYAHWVPEDRILCT-NL 209 (480)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~----~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~ 209 (480)
+...|+-.. .|+.+ .|+|-- .||..-++ ..++++.. ...+++..+++.++-+.... ..+... +.
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~~-vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~-~~~~~pa~l 196 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPAA-VPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTGK-KAYVVPADV 196 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCCC-CCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhCC-Ceeecchhh
Confidence 344444221 23333 357743 34432211 23334321 12357888888888887653 333321 10
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH----HHHhcCCCCCCCccccCCCCccccchhhhHHHHHH
Q 011650 210 --WSAEVSKLAANAFLAQRISSVNAMSALCEA-TGADVSQV----SHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVY 282 (480)
Q Consensus 210 --~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~-~gid~~~v----~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~ 282 (480)
..+.|.-++ -++.++.+-+....+.+ +|+..+-+ ...+.+= ..+.-.-|+.|--=.-||..|+.
T Consensus 197 ~~~v~Dm~s~v----ta~~~~gil~y~~~~t~i~~ap~~~~~~~~~~~l~~~-----a~l~~~~Gi~~~~~~l~p~~l~~ 267 (341)
T TIGR01724 197 TSAVADMGSLV----TAVALAGVLDYYYVGTQIINAPKEMIEKQILMTLQTM-----ASLVETSGVEGMAKAINPELLVK 267 (341)
T ss_pred cchhhhHHHHH----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHhcCHHHHHh
Confidence 112222211 12222222222322321 23322111 1111100 00111112333222347888988
Q ss_pred HHHHCCCchhhhHHHHHHHHhh
Q 011650 283 ICECNGLPEVANYWKQVIKVND 304 (480)
Q Consensus 283 ~a~~~g~~~~~~~~~~~~~~N~ 304 (480)
.|++..+.+..+.+..++++=+
T Consensus 268 sa~sM~~~~~~~~l~~~l~~l~ 289 (341)
T TIGR01724 268 SARSMHLLDRQEDLDAALKIIS 289 (341)
T ss_pred hhhhcccchHHHhHHHHHHHHH
Confidence 8888877766677777665543
No 62
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.51 E-value=3.3e-12 Score=131.13 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=144.2
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+++|+||| +|.||.++|..|.++ ||+|++||++.. +++++++.+|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 47899998 999999999999998 999999998520 1334567899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|.. ...+.++++.+ ++++++|++.|++.....+.+.+.+. + . ++..+|-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~-~-fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G-P-VLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C-C-EEeeCCCCC
Confidence 9999999853 23566778888 88999999988876555554443221 1 2 566777655
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN-LWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
.+-. .+ ....+++... + ++++.+.+.++++.++ ..+..++ .+..+.++++.-. .++....++..+++
T Consensus 202 ~~~~---~~-~~~~vv~~~~-~--~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVG---SL-AKQVVVVCDG-R--QPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCc---cc-CCCEEEEcCC-C--CchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4322 12 2223333322 1 4678889999999986 3454544 4668889998843 45555555666665
Q ss_pred HcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHH-HHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDIL-NLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~-~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
.+.|..++.+.. ++|| +|.. ...+.|. -+ ..+|......|.+.. ...+.+.+.
T Consensus 270 -~~~~~~~~~~~~-------------~~~f------r~~la~~tRia~---~~--p~lw~dI~~~N~~~~-~~l~~~~~~ 323 (374)
T PRK11199 270 -ENVDLEQLLALS-------------SPIY------RLELAMVGRLFA---QD--PQLYADIIMSSPENL-ALIKRYYQR 323 (374)
T ss_pred -cCCCHHHHHHhc-------------ChHH------HHHHHHHHHHHc---CC--HHHHHHHHHhChhHH-HHHHHHHHH
Confidence 777877765421 1211 3322 2333332 23 568888888887655 555555544
Q ss_pred h
Q 011650 318 M 318 (480)
Q Consensus 318 ~ 318 (480)
+
T Consensus 324 l 324 (374)
T PRK11199 324 F 324 (374)
T ss_pred H
Confidence 4
No 63
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.50 E-value=1.6e-12 Score=129.89 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=137.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|+++++++++++.+++....+ +.+ +. ...+..++++++ +..+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~--~~-----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG--EI-----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC--ce-----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888654333 100 00 011234566665 489999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC-cccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP-EFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (480)
||+|+|+.. +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+ .+..
T Consensus 70 vila~k~~~---------------~~~~~~~l~~~l~~~~~iv~~-~nG~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAYQ---------------LPAALPSLAPLLGPDTPVLFL-QNGVGHLEELAAYIGPER--VLGGVVTHAAELEG 131 (304)
T ss_pred EEEeccccc---------------HHHHHHHHhhhcCCCCEEEEe-cCCCCcHHHHHHhcCccc--EEEEEEEEeeEecC
Confidence 999998531 467888899888887766643 334565565655543211 001122222 2334
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH-------------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
|+...+. ...++.+|..+. ..+..+.+.++|+..+. ......|+....|.|++.|+
T Consensus 132 p~~v~~~--~~g~~~ig~~~~--~~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHT--GGGRLKIGEPDG--ESAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEc--CCCCEEEeCCCC--CcHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 5544322 224567786533 12346677788887542 23345789999999999883
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCH
Q 011650 222 --FLAQRISSVNAMSALCEATGADV 244 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~gid~ 244 (480)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 22344567899999999998753
No 64
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.50 E-value=8.7e-13 Score=145.53 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=143.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.+++..+.. ..+.+...+. ...+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAG-----VLNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEEeC
Confidence 46899999999999999999998 999999999998876533210 0011111111 125789999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.||+. +.+++ +++++++.+.+++++|+ .++|++++.. ++..+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E-----------~l~~K--~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVE-----------NPKVK--AAVLAEVEQHVREDAILASNTSTISISL---LAKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCcc-----------cHHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEE
Confidence 9864 8999999999986 34455 78999999999999988 4555666543 3332222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++.+.+.+++..+++ .++.+. +...++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------vEvv~g-~~T--s~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfi~N---Rl~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMPL---------VEVIRG-EKS--SDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (714)
T ss_pred Eec---CCCcccCce---------EeecCC-CCC--CHHHHHHHHHHHHHcCC-EEEEeC-----CcccchHH---HHHH
Confidence 333 455544331 135444 333 68999999999999874 566654 34567888 4577
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++++|+..+.++ |+++++|..++...
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~~ 530 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEKQ 530 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHhc
Confidence 899999999875 59999999998644
No 65
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.48 E-value=1e-12 Score=145.30 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=141.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|.+|+|||+|.||..+|..++.+ |++|+++|++++.+++..+.. ..+.+...+. ...++++++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 407 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDS-----ILSNLTPTL 407 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEEeC
Confidence 46899999999999999999998 999999999998877633210 0000111111 125799999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.||+. +.+++ .++++++.+++++++++ .++||+++.. ++..+..... |
T Consensus 408 ~~~~-~~~aDlViEAv~E-----------~l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig 470 (737)
T TIGR02441 408 DYSG-FKNADMVIEAVFE-----------DLSLK--HKVIKEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIG 470 (737)
T ss_pred CHHH-hccCCeehhhccc-----------cHHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEE
Confidence 9964 8999999999986 34555 78999999999999988 4556666554 3332322111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++++.+..+++.+++ .++.+.+ ...++.| .+..
T Consensus 471 ~Hf---f~P~~~m~L---------vEvv~g-~~T--s~~~~~~~~~~~~~lgk-~pv~v~d-----~pGFi~N---Ri~~ 526 (737)
T TIGR02441 471 MHY---FSPVDKMQL---------LEIITH-DGT--SKDTLASAVAVGLKQGK-VVIVVKD-----GPGFYTT---RCLG 526 (737)
T ss_pred Eec---cCCcccCce---------EEEeCC-CCC--CHHHHHHHHHHHHHCCC-eEEEECC-----cCCchHH---HHHH
Confidence 333 455544321 135444 333 68999999999999874 5666544 3457777 4567
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHh
Q 011650 228 SSVNAMSALCEATGADVSQVSHAI 251 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~ 251 (480)
++++|+..+.++ |+++++|..++
T Consensus 527 ~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 527 PMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Confidence 999999999876 67999999986
No 66
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.48 E-value=1.5e-12 Score=143.55 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=140.0
Q ss_pred CceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH---------HhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK---------QCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~---------~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++ .+ |++|+++|++++.+++..... +..++..++ .....++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYA----WKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 468999999999999999998 47 999999999998766543210 000111110 01125789999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||. ..+++ .++++++.+++++++|+ .++|++++.. ++..+..... |
T Consensus 378 ~~~-~~~~adlViEav~E-----------~l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~~g 440 (699)
T TIGR02440 378 DYR-GFKDVDIVIEAVFE-----------DLALK--HQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAASRPENVIG 440 (699)
T ss_pred ChH-HhccCCEEEEeccc-----------cHHHH--HHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhcCCcccEEE
Confidence 986 58999999999986 24445 78999999999999988 4445666554 3333322111 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| ++|....+- -.||- +..| ++++.+.+.++++.+++ .++.+.| ...++.| .+..
T Consensus 441 ~Hf---fnP~~~~~l---------VEvv~-g~~T--~~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 496 (699)
T TIGR02440 441 LHY---FSPVEKMPL---------VEVIP-HAGT--SEQTIATTVALAKKQGK-TPIVVAD-----KAGFYVN---RILA 496 (699)
T ss_pred Eec---CCccccCce---------EEEeC-CCCC--CHHHHHHHHHHHHHcCC-eEEEEcc-----ccchHHH---HHHH
Confidence 222 355443321 13543 4433 68999999999999874 5666543 4567777 5678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+++||...+.++ |++++++..++.
T Consensus 497 ~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 497 PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 899999999885 579999999984
No 67
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.47 E-value=7.7e-12 Score=122.67 Aligned_cols=195 Identities=11% Similarity=0.137 Sum_probs=120.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC----eEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ |+ +|++| |+++++.+.+.+. ++..+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 7999999999999999999998 77 89999 9999988776541 245667777878
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEeeC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++||+||+||| |. .+.++++++.+.++++++||.. ++++ .+.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~---~~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGIT---LADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCc---HHHHHHHcCC----CC-EEEEC
Confidence 89999999996 32 3577778888888888877632 3333 2233322211 11 12134
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHH--HHHHHHHHHHHHHHH
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA--ANAFLAQRISSVNAM 233 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~--~N~~~~~~ia~~nE~ 233 (480)
|..... .. ... .++..+.. .+++..+.++++|+.++ ..++...-..-..+-+. ...|.+..+.. +
T Consensus 117 P~~~~~---~~--~~~-~~l~~~~~--~~~~~~~~v~~l~~~~G--~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a---~ 183 (266)
T PLN02688 117 PNTPCL---VG--EAA-SVMSLGPA--ATADDRDLVATLFGAVG--KIWVVDEKLLDAVTGLSGSGPAYIFLAIEA---L 183 (266)
T ss_pred CCcHHH---Hh--Cce-EEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHcchhHhhhcCHHHHHHHHHHH---H
Confidence 432110 10 011 22232221 14788999999999986 34433210000111111 12233334444 4
Q ss_pred HHHHHHcCCCHHHHHHHhcC
Q 011650 234 SALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~~ 253 (480)
...+.+.|+|.++..+.+..
T Consensus 184 ~ea~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 184 ADGGVAAGLPRDVALSLAAQ 203 (266)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 44488999999999988764
No 68
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.47 E-value=1.4e-13 Score=127.01 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=101.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC----C-CCCCh-HHHHHHhcCCCEEEecCHHHHh
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLP----I-YEPGL-EEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~----~-~e~~l-~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... . ....+ ++... ...+++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEAD-AALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH-HHHHTEEEESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhh-hhhhhcccccCHHHHh
Confidence 799999999999999999998 99999999999887654431000 0 00000 00011 1125789999999855
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CCceEEe
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GINFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+||+||.|+|.. .+++ ++.++.+.+.+++++++. ++|++++.. ++..+....+ |.+|
T Consensus 78 -~adlViEai~E~-----------l~~K--~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~R~ig~Hf--- 137 (180)
T PF02737_consen 78 -DADLVIEAIPED-----------LELK--QELFAELDEICPPDTILASNTSSLSISE---LAAALSRPERFIGMHF--- 137 (180)
T ss_dssp -TESEEEE-S-SS-----------HHHH--HHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGGGEEEEEE---
T ss_pred -hhheehhhcccc-----------HHHH--HHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCceEEEEec---
Confidence 999999999852 3444 789999999999999884 445555443 2222221111 2222
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT 207 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 207 (480)
|+|....+- -.|+-| ..+ ++++.+.+..+++.+++ .++.+.
T Consensus 138 ~~P~~~~~l---------VEvv~~-~~T--~~~~~~~~~~~~~~~gk-~pv~v~ 178 (180)
T PF02737_consen 138 FNPPHLMPL---------VEVVPG-PKT--SPETVDRVRALLRSLGK-TPVVVK 178 (180)
T ss_dssp -SSTTT--E---------EEEEE--TTS---HHHHHHHHHHHHHTT--EEEEEE
T ss_pred ccccccCce---------EEEeCC-CCC--CHHHHHHHHHHHHHCCC-EEEEec
Confidence 456544331 135544 333 68999999999999864 455543
No 69
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.47 E-value=1.9e-12 Score=143.15 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=140.9
Q ss_pred CceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH---------HhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK---------QCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~---------~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++ .. |++|+++|++++.++...+.. +..++++++ .....++++++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYS----WDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 468999999999999999999 76 999999999998766533210 000111110 01125799999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||. +.+++ +++++++.+++++++++. ++|+++++. ++..+..... |
T Consensus 383 ~~~-~~~~aDlViEav~E-----------~~~~K--~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~ig 445 (708)
T PRK11154 383 DYR-GFKHADVVIEAVFE-----------DLALK--QQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAAARPEQVIG 445 (708)
T ss_pred ChH-HhccCCEEeecccc-----------cHHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhcCcccceEE
Confidence 985 58999999999985 34445 789999999999999884 445666554 3222222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++.+.+..++..+++ .++.+.| ...++.| .+..
T Consensus 446 ~Hf---f~P~~~~~l---------VEvv~g-~~T--s~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 501 (708)
T PRK11154 446 LHY---FSPVEKMPL---------VEVIPH-AKT--SAETIATTVALAKKQGK-TPIVVRD-----GAGFYVN---RILA 501 (708)
T ss_pred Eec---CCccccCce---------EEEECC-CCC--CHHHHHHHHHHHHHcCC-ceEEEec-----cCcHHHH---HHHH
Confidence 333 455544331 135544 333 68999999999998874 4565543 4456777 5778
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+++||...+.++ |+++++|..++.
T Consensus 502 ~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 502 PYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999987 789999998875
No 70
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.45 E-value=1.4e-11 Score=123.38 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=110.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..|.+. | ++|++||+++++.+.+++... ....+++.++++.+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 6899999999999999999987 6 489999999998877664210 112345666778999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc-
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|+|.. .+.++++.+.+.++++++|++.+++.....+.+.+.+.+ +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999999853 235667788888888998887666654444444333221 122 34445543
Q ss_pred ---cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCc
Q 011650 159 ---LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNL 209 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 209 (480)
..++.+..+++....+++... ...+++..+.+.++++.++ ..+...+.
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~-~~~~~~~~~~~~~l~~~lG--~~~~~~~~ 179 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPP-EGTDPAAVARLTAFWRALG--ARVEEMDP 179 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCC-CCCCHHHHHHHHHHHHHcC--CEEEEcCH
Confidence 344444444544444545422 2224778899999999885 35555443
No 71
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=4.7e-12 Score=125.14 Aligned_cols=207 Identities=13% Similarity=0.176 Sum_probs=151.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH---Hhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK---HVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
+.|||||+|.||..+|.+++++ |+.|.+|+|+.++.+++-++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 3599999999999999999999 99999999999999987753210 123444445444 3567
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
..-|+++|... +.+...++++.++|.++.|||+-. +..+.|.++..+. .+.+ ..| +..+-.
T Consensus 68 PRkI~lMVkAG--------------~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~G--i~F-vG~GVS 129 (473)
T COG0362 68 PRKILLMVKAG--------------TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEKG--ILF-VGMGVS 129 (473)
T ss_pred CceEEEEEecC--------------CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-HhcC--CeE-Eecccc
Confidence 78899999753 235678899999999999999875 3466777766543 3332 333 333333
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC---CC--eEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP---ED--RILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~---~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
-..+|. ++.|.+|.||. +++.+.+.++|+.+.- +. +.+++.-+++..+|+++|-.-.--+.++.|
T Consensus 130 GGEeGA-----~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEGA-----RHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred cccccc-----ccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 333443 45567889986 8999999999997641 11 234566688999999999988888889999
Q ss_pred HHHHHHH-cCCCHHHHHHHhc
Q 011650 233 MSALCEA-TGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~~-~gid~~~v~~~~~ 252 (480)
...+.+. +|++.+++.+...
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999888 7998777666553
No 72
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.43 E-value=2.5e-11 Score=122.00 Aligned_cols=256 Identities=16% Similarity=0.085 Sum_probs=151.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||+.+|..|+++ ||+|+++.+++. +.+++....+....-+.. .....+++++++ ...+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDSVHGDFH-----LPPVQAYRSAED-MPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEeCCCCee-----ecCceEEcchhh-cCCCC
Confidence 38999999999999999999998 999999999863 455543322211100000 011334555543 67899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+.+.++++|+. .+...+..+.+.+.+.+... ..-.+..+..+..
T Consensus 75 ~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~ 137 (313)
T PRK06249 75 WVLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVG 137 (313)
T ss_pred EEEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCC
Confidence 9999998642 25677788888887776653 34455666666665543211 0001112223445
Q ss_pred cCccccccCCCCeEEEEccCCcch-----HHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH--------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEG-----MKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA-------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~-----~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------- 221 (480)
||...+. ...++.+|..+.. + .+..+.+.++|+..+. ......|+....|.|++.|+
T Consensus 138 pg~v~~~--~~g~~~iG~~~~~-~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 138 PGVIHHL--AYGRVNLGYHSGP-AADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CeEEEEC--CCCcEEEecCCCC-cccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 5554332 2334667754321 2 3556677888887542 34556899999999999873
Q ss_pred -------HHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHhcCCCC-CCCccccCCCCccccchhhh--HHHHHHHHHH
Q 011650 222 -------FLAQRISSVNAMSALCEATGAD-----VSQVSHAIGFDSR-IGPKFLNASVGFGGSCFQKD--ILNLVYICEC 286 (480)
Q Consensus 222 -------~~~~~ia~~nE~~~l~~~~gid-----~~~v~~~~~~~~~-i~~~~~~pg~g~gG~c~~kD--~~~l~~~a~~ 286 (480)
.+.+..+.+.|+..++++.|++ .+++++.+...+. .++++.+-- .|.-...| ..++++.+++
T Consensus 214 ~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~tEid~i~G~vv~~a~~ 290 (313)
T PRK06249 214 PLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYHDFE---EGRPLELEAIYANPLAAARA 290 (313)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHHHHH---CCCcccHHHHhhHHHHHHHH
Confidence 2344556789999999999986 3344444433221 111111100 01111111 2367888999
Q ss_pred CCCc
Q 011650 287 NGLP 290 (480)
Q Consensus 287 ~g~~ 290 (480)
+|++
T Consensus 291 ~Gi~ 294 (313)
T PRK06249 291 AGCA 294 (313)
T ss_pred hCCC
Confidence 9987
No 73
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.40 E-value=2.3e-11 Score=120.29 Aligned_cols=197 Identities=14% Similarity=0.196 Sum_probs=123.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.|||+|||+|.||.+||..|.++ | ++|+++|+++ ++.+.+... .+++.++++.++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~ 62 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKEL 62 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHH
Confidence 38999999999999999999987 6 8999999975 466666531 124566777787
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEe-
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQIL- 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~- 153 (480)
+.+||+||+|||.. .+.++++++.+.++++++||.. +++.+.+.++ .+.. +..++
T Consensus 63 ~~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~-----~~~v~r 119 (279)
T PRK07679 63 LTDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQK-----DVPIIR 119 (279)
T ss_pred HhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-----CCeEEE
Confidence 88999999999842 2466778888888888888775 7776665443 2221 11222
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHH--HHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAA--NAFLAQRISSVN 231 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--N~~~~~~ia~~n 231 (480)
..|... .. . .....++.++.. .+++..+.++++|+.++. .+....-.--..+.+.. ..| ...++.
T Consensus 120 ~mPn~~--~~-~---~~~~t~~~~~~~--~~~~~~~~v~~l~~~~G~--~~~v~e~~~~~~~a~~Gsgpa~---~~~~~e 186 (279)
T PRK07679 120 AMPNTS--AA-I---LKSATAISPSKH--ATAEHIQTAKALFETIGL--VSVVEEEDMHAVTALSGSGPAY---IYYVVE 186 (279)
T ss_pred ECCCHH--HH-H---hcccEEEeeCCC--CCHHHHHHHHHHHHhCCc--EEEeCHHHhhhHHHhhcCHHHH---HHHHHH
Confidence 234211 11 1 011134556542 257788999999999863 44432100000011111 122 233334
Q ss_pred HHHHHHHHcCCCHHHHHHHhcC
Q 011650 232 AMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 232 E~~~l~~~~gid~~~v~~~~~~ 253 (480)
-+...+.+.|+|.++..+++..
T Consensus 187 al~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 187 AMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455689999999888887764
No 74
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.38 E-value=7.7e-11 Score=115.69 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=123.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|.||..+|..|.++ | ++|+++|+++++.+.+.+.. ++..+++.++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999987 7 78999999999888776521 2345567777788
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEeeCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
.+|+||+|+|.. .+.++++.+.+++ +++|+.. +.++ .+.+++.+.. +.. .+-..|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999742 3577788888776 3555433 2222 2334444321 112 223455
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK-LAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (480)
.... . +......+.-+ ...+++..+.++.+|+.++ ..+...+...-...= +..+ .-+....++..+..
T Consensus 118 ~~p~---~---~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA---L---VGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGS-GPAYVFLFIEALAD 186 (267)
T ss_pred CchH---H---HcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcC-hHHHHHHHHHHHHH
Confidence 3211 0 11111222222 2235888999999999986 355554333222222 2222 12233567778888
Q ss_pred HHHHcCCCHHHHHHHhc
Q 011650 236 LCEATGADVSQVSHAIG 252 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~ 252 (480)
.+.+.|++.++..+.+.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 187 AGVKLGLPREQARKLAA 203 (267)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88889999988777665
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.37 E-value=5.4e-11 Score=121.71 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=113.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+........+ .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999998 899999998877654433211100 01235677777899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC----
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP---- 156 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---- 156 (480)
||+|||.. .+.++++++.+ .++++.+|++.+++.....+.+...+.. +.. ++..+|
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~---~~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGD---LIR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC---CCe-EEeeCCcCcC
Confidence 99999842 35677888887 4788888888777776655555443221 112 344456
Q ss_pred cccccCccccccCCC-CeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKP-DRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLAA 219 (480)
Q Consensus 157 e~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~ 219 (480)
|+..+..+..+++.. ..++..+. ..+++..+.++++++.++ ..+..++.+ ....+.++.
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~~--~~~~~~~~~v~~l~~~lG--a~~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPDD--HTDPDAVAELKDLLSGTG--AKFVVLDAEEHDRAVALVS 185 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecCC--CCCHHHHHHHHHHHHHcC--CEEEECCHHHHhHHHhHhc
Confidence 333333333344433 34444322 225788999999999986 355444433 233444433
No 76
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.37 E-value=3e-11 Score=121.06 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHH-------HHHHHcC----------CCCCCCCChHHHHHHhcCCCEEEecC--H
Q 011650 12 VGGPTMAVIALKCPSIEVAVVDISVPR-------INAWNSD----------QLPIYEPGLEEVVKQCRGKNLFFSTD--V 72 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~-------v~~l~~g----------~~~~~e~~l~~~~~~~~~~~l~~t~d--~ 72 (480)
||..+|..++.+ |++|+++|++++. ++...+. ...+.+...+. ..++++++++ +
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA-----VLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEeecCcch
Confidence 799999999998 9999999999853 2221110 00000101111 1257888765 6
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCce
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINF 150 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
.+++++||+||.|||.. .+++ ...+.++.+.+++++++. ||.+.-....++..+..... |.+|
T Consensus 74 ~~a~~~aD~ViEav~E~-----------~~~K--~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf 138 (314)
T PRK08269 74 ADALADADLVFEAVPEV-----------LDAK--REALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHW 138 (314)
T ss_pred HHHhccCCEEEECCcCC-----------HHHH--HHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEec
Confidence 67789999999999863 3444 667888999999998883 44444444455444322111 2222
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++|....+- -.| +++..+ ++++++++.++++.+++ .++++.+... +....+...++
T Consensus 139 ---~~Pp~~~~l---------vEV-v~g~~t--~~e~~~~~~~ll~~lGk-~~v~v~d~~G--------fi~nri~~~~l 194 (314)
T PRK08269 139 ---LNPAYLMPL---------VEV-SPSDAT--DPAVVDRLAALLERIGK-VPVVCGPSPG--------YIVPRIQALAM 194 (314)
T ss_pred ---CCccccCce---------EEE-eCCCCC--CHHHHHHHHHHHHHcCC-cEEEecCCCC--------cchHHHHHHHH
Confidence 233322211 123 465544 68999999999999874 5666666542 23457889999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCC
Q 011650 231 NAMSALCEATGADVSQVSHAIGFDS 255 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~~ 255 (480)
+|...++++.++|++++.+++....
T Consensus 195 ~EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 195 NEAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 9999999999999999999997653
No 77
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.37 E-value=3e-10 Score=111.42 Aligned_cols=186 Identities=19% Similarity=0.198 Sum_probs=116.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH-HHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV--DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV-EKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~--D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~-~~a~~ 77 (480)
+|+|+|+|+|.||..+|..|.++ |+.|.++ |++.+..+.-.+.. + .-+.+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~lg-------v----------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALELG-------V----------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhcC-------c----------ccccccchhhhhcc
Confidence 47999999999999999999998 8877555 55544443332210 0 01122333 44577
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||- ..+.++++++.++++++++|++-+++.....+.+.+.+.+ .. -++..+|-
T Consensus 64 ~aD~VivavPi---------------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~---~~-~~vg~HPM 124 (279)
T COG0287 64 EADLVIVAVPI---------------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG---DV-RFVGGHPM 124 (279)
T ss_pred cCCEEEEeccH---------------HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccC---CC-eeEecCCC
Confidence 89999999984 2457888999999999999998665543433333332221 12 34667886
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-HHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS-AEVSKLAANAFLAQRISS 229 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N~~~~~~ia~ 229 (480)
+..+ +..+++.+..+|+ ++....+.+..+.+.++|+.++ ..++.++++. -..+-.+.-.-..+..++
T Consensus 125 ~G~~--~~~~lf~~~~~vl-tp~~~~~~~~~~~~~~~~~~~g--a~~v~~~~eeHD~~~a~vshLpH~~a~al 192 (279)
T COG0287 125 FGPE--ADAGLFENAVVVL-TPSEGTEKEWVEEVKRLWEALG--ARLVEMDAEEHDRVMAAVSHLPHAAALAL 192 (279)
T ss_pred CCCc--ccccccCCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--CEEEEcChHHHhHHHHHHHHHHHHHHHHH
Confidence 6554 3445666666665 4444345778999999999875 4666776654 333333333333333333
No 78
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.36 E-value=6.4e-11 Score=116.40 Aligned_cols=199 Identities=19% Similarity=0.177 Sum_probs=120.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.+|+..|.++ |+ +|+++|+++++.+.+.+. .++..+++..+++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~--g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~ 62 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK--NIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVAN 62 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHh
Confidence 6899999999999999999987 53 799999999988876531 12345667777789
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+||| |. .+.++++++.++++++++|| |....=+.+.+++.+.... .+ +=..|.
T Consensus 63 ~aDiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~~---~v-vR~MPN 121 (272)
T PRK12491 63 SADILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRKL---KV-IRVMPN 121 (272)
T ss_pred hCCEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCCC---cE-EEECCC
Confidence 9999999998 42 35777888888888887776 3333333455655553211 11 112232
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
....-.... ..+..+ ...+++..+.+..+|+.++. .+... -..-...=-+.-+-=+....++..+...+
T Consensus 122 -----~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~~-E~~~d~~talsgsgPAf~~~~~eal~~a~ 190 (272)
T PRK12491 122 -----TPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVVN-EKLMDVVTSISGSSPAYVYMFIEAMADAA 190 (272)
T ss_pred -----hHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEEc-HHHhhhHHHhccCcHHHHHHHHHHHHHHH
Confidence 111111111 122222 22356678899999999863 44332 11101111111111133455666677778
Q ss_pred HHcCCCHHHHHHHhc
Q 011650 238 EATGADVSQVSHAIG 252 (480)
Q Consensus 238 ~~~gid~~~v~~~~~ 252 (480)
.+.|++.++..+.+.
T Consensus 191 v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 191 VLGGMPRKQAYKFAA 205 (272)
T ss_pred HHcCCCHHHHHHHHH
Confidence 888888877776654
No 79
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.32 E-value=1.4e-10 Score=113.41 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=119.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|.+. |+. +.++++++++.+.+.+.. ++.+.+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 6999999999999999999987 653 578999999887766421 124556788887889
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+| |. .+.++++.+. +.++++|+. +..+-+.+.+.+.+.... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 2355566552 456787774 445555666776664321 1 22345542
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH-----HHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA-----FLAQRISSVNAM 233 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----~~~~~ia~~nE~ 233 (480)
.. . . .... ..+.++ . +.++++|+.++. .+...+. |...+. +.+....++.++
T Consensus 119 ~~--a-~--~~g~-t~~~~~------~---~~~~~l~~~lG~--~~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~ 175 (258)
T PRK06476 119 FV--A-E--RKGV-TAIYPP------D---PFVAALFDALGT--AVECDSE------EEYDLLAAASALMATYFGILETA 175 (258)
T ss_pred hh--h-h--CCCC-eEecCC------H---HHHHHHHHhcCC--cEEECCh------HhccceeehhccHHHHHHHHHHH
Confidence 11 1 0 0111 122221 2 478889998863 4444332 222222 334455688899
Q ss_pred HHHHHHcCCCHHHHHHHhc
Q 011650 234 SALCEATGADVSQVSHAIG 252 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~ 252 (480)
..++++.|+|.++..+.+.
T Consensus 176 ~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 176 TGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999988887765
No 80
>PLN02256 arogenate dehydrogenase
Probab=99.28 E-value=1e-09 Score=109.38 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=105.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
+|+|+|||+|.||..+|..|.+. |++|++||+++.. +.... -++...++.++++ .++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~-------------------~gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAE-------------------LGVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHH-------------------cCCeeeCCHHHHhhCCC
Confidence 37999999999999999999987 8999999998642 22221 0133456777755 479
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHH-HhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||.. .+.++++++ .++++++++|++.+++.....+.+.+.+.. +.. ++..+|-+
T Consensus 94 DvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~~-~V~~HPma 154 (304)
T PLN02256 94 DVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EFD-ILCTHPMF 154 (304)
T ss_pred CEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CCe-EEecCCCC
Confidence 9999999842 246777777 567888999987766554444444443322 122 46677765
Q ss_pred cccCccccccCCCCeEEEEcc---CCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011650 159 LAEGTAINDLFKPDRVLIGGR---ETPEGMKAIKALKDVYAHWVPEDRILCTNLWS 211 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
..+... ..+....+++... +..++++..+.+.++++.++ ..+..++++.
T Consensus 155 G~e~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 155 GPESGK--GGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCCc--cccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 443211 1111112333220 02225778899999999885 4666666654
No 81
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.28 E-value=1.7e-11 Score=112.60 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=146.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-----------CCCCCCChHHHHHHhcCCCEEEe
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-----------LPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|.+|+|||.|.||..+|+.-+.. |++|+++|.|++.+.+..++. ..-....+++++.. ...+++.+
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~-~l~ri~~~ 87 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDD-TLDRIKTS 87 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH-HHHHHHHc
Confidence 35799999999999999999988 999999999998777644321 11111224444432 12457788
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhcC--
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~-- 146 (480)
++.++++.++|+||.++-+ +.|++ +..+++|...+++.+++.. .|++. . ..+...++....
T Consensus 88 tnv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~tNTSSl~--l-t~ia~~~~~~srf~ 151 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILATNTSSLS--L-TDIASATQRPSRFA 151 (298)
T ss_pred CCHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEeeccccee--H-HHHHhhccChhhhc
Confidence 9999999999999999854 45666 7788999998988887753 23222 2 223333433322
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHH
Q 011650 147 GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| ++|..... +. .|| -++++ +++++..+..+-..+++ .++-+.|. ..++-| .+.
T Consensus 152 GlHF---fNPvPvMK------Lv---EVi-r~~~T--S~eTf~~l~~f~k~~gK-ttVackDt-----pGFIVN---RlL 207 (298)
T KOG2304|consen 152 GLHF---FNPVPVMK------LV---EVI-RTDDT--SDETFNALVDFGKAVGK-TTVACKDT-----PGFIVN---RLL 207 (298)
T ss_pred eeec---cCCchhHH------Hh---hhh-cCCCC--CHHHHHHHHHHHHHhCC-CceeecCC-----Cchhhh---HHH
Confidence 5555 56654321 11 243 44444 68999999998888874 45555442 346667 567
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Q 011650 227 ISSVNAMSALCEATGADVSQVSHAIGFDS 255 (480)
Q Consensus 227 ia~~nE~~~l~~~~gid~~~v~~~~~~~~ 255 (480)
+-+++|..++.++..+..+++..++..+.
T Consensus 208 iPyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 208 IPYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 99999999999999999999999998764
No 82
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.28 E-value=8.2e-10 Score=110.24 Aligned_cols=208 Identities=22% Similarity=0.221 Sum_probs=140.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|+|.||+.+|..|+++ |++|+++-+++. ++++++.+..+.+..- ... -....+++. +....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~-----~~~~~~~~~-~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGG-NFT-----TPVVAATDA-EALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCC-ccc-----cccccccCh-hhcCCCCE
Confidence 8999999999999999999998 889999888766 8999986655543221 000 011223333 34679999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCceEEeeCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~~ 159 (480)
||++|++.. +.++++.+.+.+++.+.|+. -....|..+.+.+...+... | .+..+-.+-
T Consensus 71 viv~vKa~q---------------~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~il~G---~~~~~a~~~ 131 (307)
T COG1893 71 VIVTVKAYQ---------------LEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETVLGG---VTTHGAVRE 131 (307)
T ss_pred EEEEecccc---------------HHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceEEEE---EeeeeeEec
Confidence 999998642 47889999999999887653 34566777766655544311 1 122333444
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH------------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA------------------ 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------ 221 (480)
.+|...+.- ...+.+|..... .++..+.+.++|+...- ...+..|+....|.|++-|+
T Consensus 132 ~~g~v~~~g--~g~~~ig~~~~~-~~~~~~~i~~~~~~a~~-~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~ 207 (307)
T COG1893 132 GPGHVVHTG--LGDTVIGELRGG-RDELVKALAELFKEAGL-EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLE 207 (307)
T ss_pred CCceEEEec--CCcEEEccCCCC-chHHHHHHHHHHHhCCC-CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhc
Confidence 566654332 234566755321 23677788888876542 34455789999999999882
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCC
Q 011650 222 ---FLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~gi 242 (480)
.+.+..+.+.|...++.+.|+
T Consensus 208 ~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 208 NPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccC
Confidence 445566788999999999883
No 83
>PRK07680 late competence protein ComER; Validated
Probab=99.27 E-value=5.6e-10 Score=109.99 Aligned_cols=153 Identities=11% Similarity=0.210 Sum_probs=100.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||..++..|.++ | ++|+++|+++++.+.+.+.. .++..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 6999999999999999999987 6 47999999998887765310 13556778888789
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||. ..+.++++.+.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 1357788888888888888775542 12345555544321 1223342
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC 206 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 206 (480)
. ++.+..+. ..++.|.. .+++..+.+.++|+.++. .+..
T Consensus 119 ~--~~~~~~G~---t~~~~g~~---~~~~~~~~~~~ll~~~G~--~~~i 157 (273)
T PRK07680 119 I--TNRALSGA---SLFTFGSR---CSEEDQQKLERLFSNIST--PLVI 157 (273)
T ss_pred h--HHHHhhcc---EEEeeCCC---CCHHHHHHHHHHHHcCCC--EEEE
Confidence 1 11111111 12233321 146677899999999863 4444
No 84
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.24 E-value=4.9e-10 Score=125.34 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=115.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..|.++ | ++|++||+++++.+.+.+.... ...+++..+++.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~~-----------------~~~~~~~~~~~~~a 64 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGVI-----------------DRGEEDLAEAVSGA 64 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCCC-----------------CcccCCHHHHhcCC
Confidence 6899999999999999999987 6 5899999999888776542110 11245667778899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||. ..+.++++.+.++++++++|++.+++.....+.+.+.+.... .. ++..+|...
T Consensus 65 DvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~--~r-~~~~hPm~G 126 (735)
T PRK14806 65 DVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP--AG-FVPGHPIAG 126 (735)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC--Ce-EEecCCcCc
Confidence 999999984 235788888999888889998888887777776666554311 12 355677443
Q ss_pred ccCc----cccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011650 160 AEGT----AINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW 210 (480)
Q Consensus 160 ~~G~----a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.++. +...++....+++-. ....+++..+.+.++++.++ ..+...+.+
T Consensus 127 ~~~~g~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~ 178 (735)
T PRK14806 127 SEKSGVHAANADLFRNHKVILTP-LAETDPAALARVDRLWRAVG--ADVLHMDVA 178 (735)
T ss_pred CCcchhhhhhhHHhCCCeEEEEC-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 3321 222344333343322 22235778899999999985 355555544
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.20 E-value=5.9e-09 Score=114.21 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=104.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-cCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-EAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+- + +...++.++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~------------------G-v~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL------------------G-VSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc------------------C-CeEeCCHHHHHhcCCC
Confidence 7999999999999999999987 8999999998643 222210 1 345567777665 589
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||.. .+.++++++.. .++++++|++.+++.....+.+.+.+.. +.+ ++..+|-+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 24566667765 5788999998877763333334433322 223 455777654
Q ss_pred ccCc-----cccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhH
Q 011650 160 AEGT-----AINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSA 212 (480)
Q Consensus 160 ~~G~-----a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~a 212 (480)
.+.. ....++.+ ++++++.. ..+..+.+.++++.++ ..++.++++.-
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~~--~~~~~~~l~~l~~~lG--a~vv~ms~eeH 540 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDDR--RVSRCDSFLDIFAREG--CRMVEMSCAEH 540 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCcc--hHHHHHHHHHHHHHcC--CEEEEeCHHHH
Confidence 4321 11223333 23454321 3455666778898875 46666776553
No 86
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.20 E-value=3.9e-10 Score=112.87 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=132.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|+|+|.||+.+|..|++. |++|+++++..++++++++ ++..+...+-... -.... .+.++ ...+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~------~~~~~-~~~~~-~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASL------YAIPA-ETADA-AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCccee------eccCC-CCccc-ccccC
Confidence 8999999999999999999998 9999999999889999875 3333322111000 00111 11122 46789
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEee-CCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILS-NPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~ 159 (480)
+||+||++. + +.++++.+.+++.+++.|+. -....+..+.+.+.+.+... -..+++ +..+.
T Consensus 73 ~viv~vK~~------------~---~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY------------D---AEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH------------h---HHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 2 46788899999998886653 34556666666665543210 112222 33445
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH----------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL---------------- 223 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~---------------- 223 (480)
.||...+... ..+.+|... .+..+.+.++|+..+- ......|+...-|.|++.|+-.
T Consensus 135 ~pg~v~~~~~--g~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGH--GFTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEece--EEEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 6676544332 224467442 2345667777775431 2334568999999999988521
Q ss_pred --HHHHHHHHHHHHHHHHcCCC
Q 011650 224 --AQRISSVNAMSALCEATGAD 243 (480)
Q Consensus 224 --~~~ia~~nE~~~l~~~~gid 243 (480)
......+.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 13456788999999998875
No 87
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.19 E-value=5e-09 Score=106.65 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=105.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+ |.||..+|..|.+. .+++|+++|++.+ .++++++++.+||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 68999999 99999999999975 3899999998410 1235566789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh---CCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV---SKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~---l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|. +.+.++++++.++ ++++++|++-+++.....+.+ .+.. .. ++..+|-
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcC--CC-EEeeCCC
Confidence 99999984 3457778888875 789999998766653333322 2221 23 5777887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-HHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS-AEVSKLAA 219 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~ 219 (480)
+..+.. +++....+++- +.. ..+..+.++++++.++ ..+..++++. -+++-++.
T Consensus 112 aG~E~s---~lf~g~~~ilt-p~~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVC-EAR--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALVQ 166 (370)
T ss_pred CCCCCC---cccCCCeEEEe-CCC--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHH
Confidence 665433 23444445443 222 3455778899999875 4666777654 34444443
No 88
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=7.7e-10 Score=107.93 Aligned_cols=207 Identities=12% Similarity=0.173 Sum_probs=147.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH---hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH---VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
+.|+.|||+.||..++.+.+++ |+.|.+|+|+.++++.+.+.... ...+.-..++++- ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 4699999999999999999999 99999999999999986542110 0011122344442 456
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-CcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
...|++.|... +.+...++++.++|.+|.+||+-... .+.|.++..+. .+.+ . .+|..+-.
T Consensus 71 PR~iillvkAG--------------~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el-~k~G--i-lfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAG--------------APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCREL-AKKG--I-LFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCC--------------CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHH-HhcC--c-EEEecCcc
Confidence 77888888653 23456788999999999999986543 55666666544 3332 1 23444433
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC----CC--eEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP----ED--RILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~----~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
-..+|. +..|.+|.||. +++...++.+|+.+.- +. ..++++-+++.++|+++|-.-.--+.++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 334443 45566888885 8899999999987531 11 34567888999999999988878888999
Q ss_pred HHHHHHHH-cCCCHHHHHHHhc
Q 011650 232 AMSALCEA-TGADVSQVSHAIG 252 (480)
Q Consensus 232 E~~~l~~~-~gid~~~v~~~~~ 252 (480)
|...+.++ +|++-.++.++..
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7888777766654
No 89
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.15 E-value=2.1e-09 Score=106.16 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=112.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||..+|..|.++ | ++|++|++++ ++.+.+.+.. +....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~~-----------------~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDKY-----------------PTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHHc-----------------CCeEEeCCHHHH
Confidence 79999999999999999999987 6 7899999864 4444443310 124456777777
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc-HHHHHHHHHhhcCCCceEEee
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT-AEAIEKILMHNSRGINFQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (480)
+.++|+||+|||. ..+.++++++.++++++++|+.. ..|. .+.+++.+... .+ +=.
T Consensus 62 ~~~aDvVilavpp---------------~~~~~vl~~l~~~l~~~~~ivS~---~aGi~~~~l~~~~~~~----~v-vR~ 118 (277)
T PRK06928 62 FTKCDHSFICVPP---------------LAVLPLLKDCAPVLTPDRHVVSI---AAGVSLDDLLEITPGL----QV-SRL 118 (277)
T ss_pred HhhCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEE---CCCCCHHHHHHHcCCC----CE-EEE
Confidence 8999999999983 23577888888888878766532 2233 23455544321 11 111
Q ss_pred CC---cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHH--HHHHHHHHHHHHHH
Q 011650 155 NP---EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVS--KLAANAFLAQRISS 229 (480)
Q Consensus 155 ~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~--Kl~~N~~~~~~ia~ 229 (480)
.| .....|. ..+..+ +..+++..+.+..+|+.++. .+.+.. .++- =-+.-+--+....+
T Consensus 119 MPN~~~~~g~g~---------t~~~~~--~~~~~~~~~~v~~l~~~~G~--~~~v~E---~~~d~~tal~gsgPA~~~~~ 182 (277)
T PRK06928 119 IPSLTSAVGVGT---------SLVAHA--ETVNEANKSRLEETLSHFSH--VMTIRE---ENMDIASNLTSSSPGFIAAI 182 (277)
T ss_pred eCccHHHHhhhc---------EEEecC--CCCCHHHHHHHHHHHHhCCC--EEEEch---hhCceeeeeecCHHHHHHHH
Confidence 22 1112221 122222 22356778899999999863 443321 1110 00001111222333
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHhc
Q 011650 230 VNAMSALCEAT-GADVSQVSHAIG 252 (480)
Q Consensus 230 ~nE~~~l~~~~-gid~~~v~~~~~ 252 (480)
+..+..-+.+. |++.++..+.+.
T Consensus 183 ~~al~~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 183 FEEFAEAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44455555665 577666555443
No 90
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.14 E-value=2.3e-10 Score=94.17 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=68.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC---CeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhh
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS---IEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVR 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G---~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+|||+|.||..++..|.++ | ++|+.+ ++++++.+++.+.. ...++. +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKEY------------------GVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHHC------------------TTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHhh------------------ccccccCChHHhhc
Confidence 799999999999999999998 8 999955 99999999887521 233444 7788899
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
.+|+||+|||. . .+.++++++ +...++++||.
T Consensus 61 ~advvilav~p-~--------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKP-Q--------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-G-G--------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECH-H--------------HHHHHHHHH-hhccCCCEEEE
Confidence 99999999983 2 246778888 66777888875
No 91
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.13 E-value=3.6e-09 Score=102.48 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=122.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||..|+.-|.+++ +..+|++.++++++.+.+.+.. +.. .+++.++++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g~~-~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------GVV-TTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------CCc-ccCcHHHHHhh
Confidence 689999999999999999999982 1269999999999987555421 111 26777778899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEe-eCC-
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQIL-SNP- 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~P- 156 (480)
+|+||+||+ |. .+.++++.+.+ ..++++|| |-...-+.+.+...+.. . .++ -.|
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~-~-----~vvR~MPN 118 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGG-L-----RVVRVMPN 118 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCC-C-----ceEEeCCC
Confidence 999999997 42 24777888877 66788876 33333334556666641 1 111 122
Q ss_pred --cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 --EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 157 --e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.....|. ..+..+. ..+++..+.+.++|+.+++ .+.+..-.---++-+. -.-=+....++..+.
T Consensus 119 t~a~vg~g~---------t~i~~~~--~~~~~~~~~v~~l~~~~G~--v~~v~E~~~da~Tais-GSgPAyv~~~iEal~ 184 (266)
T COG0345 119 TPALVGAGV---------TAISANA--NVSEEDKAFVEALLSAVGK--VVEVEESLMDAVTALS-GSGPAYVFLFIEALA 184 (266)
T ss_pred hHHHHcCcc---------eeeecCc--cCCHHHHHHHHHHHHhcCC--eEEechHHhhHHHHHh-cCCHHHHHHHHHHHH
Confidence 2222221 1222222 2257788899999999863 4444311101111111 111233344667788
Q ss_pred HHHHHcCCCHHHHHHHhc
Q 011650 235 ALCEATGADVSQVSHAIG 252 (480)
Q Consensus 235 ~l~~~~gid~~~v~~~~~ 252 (480)
.-+.+.|++.++..+.+.
T Consensus 185 ~agv~~Gl~~~~A~~l~~ 202 (266)
T COG0345 185 DAGVRLGLPREEARELAA 202 (266)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 888899999888877665
No 92
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.13 E-value=8.1e-09 Score=99.96 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=117.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC---Ce-EEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS---IE-VAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G---~~-V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+++..|+++ | .+ ++++++ ++++.+.+.+. .++..+++.++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~--~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 64 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT--SKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHV 64 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHH
Confidence 4699999999999999999886 4 23 778887 56777666531 1234567888888
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
+++|+||+|+|.. .+.++++++.++++ +++|+..+ .+. .+.+++.+.. +.. .+-..
T Consensus 65 ~~~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~---~~~l~~~~~~---~~~-v~r~~ 121 (245)
T PRK07634 65 TSVDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIG---PSYLEERLPK---GTP-VAWIM 121 (245)
T ss_pred hcCCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCC---HHHHHHHcCC---CCe-EEEEC
Confidence 9999999999842 24677788887776 56665433 222 2334444422 112 23356
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHH---HHHHHHHHHHHH
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAAN---AFLAQRISSVNA 232 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N---~~~~~~ia~~nE 232 (480)
|....+- ....+.+..+. ..+++..+.++++|+.++. .+... ..+ ...+.- +--+....++..
T Consensus 122 Pn~a~~v-----~~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~---e~~-~~~~~a~~gs~pa~~~~~~~a 187 (245)
T PRK07634 122 PNTAAEI-----GKSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT---EEE-VHQLTAVTGSAPAFLYYFAES 187 (245)
T ss_pred CcHHHHH-----hcCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC---HHH-cchHHhhhcchHHHHHHHHHH
Confidence 6543211 01111222221 1257888999999999863 44432 111 111111 111233455566
Q ss_pred HHHHHHHcCCCHHHHHHHhc
Q 011650 233 MSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~ 252 (480)
+...+.+.|++.++..+++.
T Consensus 188 ~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 188 LIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 77778889999888777765
No 93
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.09 E-value=1.5e-08 Score=96.53 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=69.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC-CCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLP-IYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+||| +|.||.++|..|+++ ||+|+++++++++++.+++.... +...+. ..++..+ +..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~~-~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTGA-DNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEEe-ChHHHHhcC
Confidence 7999997 899999999999998 99999999999998877642100 000000 0113333 446678999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||+|||.. .+.++++++.+.+. +++|+..+
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~-~~vvI~~~ 101 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELS-GKLVISPV 101 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhcc-CCEEEEec
Confidence 9999999853 34666777777665 47776544
No 94
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.05 E-value=8e-09 Score=101.03 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=114.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.+++..|.++ + .+++++|+++++. ....+.+..+++.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~--~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 56 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS--NIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAK 56 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC--CCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHH
Confidence 7999999999999999999987 4 3599999876431 0123456667778
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|+|. ..+.++++++.+++.++.+|.+..++...+ ++..+... .. .+
T Consensus 57 ~~D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~---~~-vv----- 109 (260)
T PTZ00431 57 TCDIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVE---AK-IV----- 109 (260)
T ss_pred hCCEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCC---Ce-EE-----
Confidence 99999999873 235788888888887666666655555333 33333211 11 11
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|..|+.... +.+. ..++... ...+++..+.++++|+.++. .+.+.. +.-...=-+.-+--+....++..+...+
T Consensus 110 r~mPn~p~~-~g~g-~t~i~~~-~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~ta~~gsgPA~~~~~~~al~~~~ 183 (260)
T PTZ00431 110 RVMPNTPSL-VGQG-SLVFCAN-NNVDSTDKKKVIDIFSACGI--IQEIKE-KDMDIATAISGCGPAYVFLFIESLIDAG 183 (260)
T ss_pred EECCCchhH-hcce-eEEEEeC-CCCCHHHHHHHHHHHHhCCc--EEEECh-HHcchhhhhcCCHHHHHHHHHHHHHHHH
Confidence 223333211 1111 1233322 22356778899999999853 444421 1101111111111233445566677788
Q ss_pred HHcCCCHHHHHHHhc
Q 011650 238 EATGADVSQVSHAIG 252 (480)
Q Consensus 238 ~~~gid~~~v~~~~~ 252 (480)
.+.|++.++..+.+.
T Consensus 184 v~~Gl~~~~a~~l~~ 198 (260)
T PTZ00431 184 VKNGLNRDVSKNLVL 198 (260)
T ss_pred HHcCCCHHHHHHHHH
Confidence 888999888777654
No 95
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.02 E-value=6e-08 Score=94.76 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=110.0
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCC
Q 011650 16 TMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGL 95 (480)
Q Consensus 16 lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~ 95 (480)
+|..|.++++.++|+++|++++..+...+.+. .-...++ .+++.++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----------------~~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-----------------IDEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----------------SSEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----------------eeeccCC-HhHhcCCCEEEEcCCH-------
Confidence 57788888444899999999998877643211 0123333 4568999999999973
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEe----eCCcccccCccccccCCC
Q 011650 96 GAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQIL----SNPEFLAEGTAINDLFKP 171 (480)
Q Consensus 96 ~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~----~~Pe~~~~G~a~~~~~~~ 171 (480)
+.+..+++++.++++++++|++.+++.....+.+.+.+... .. ++. ++||..++..+..+++..
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~---~~-~v~~HPM~G~e~~G~~~a~~~lf~g 123 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEG---VR-FVGGHPMAGPEKSGPEAADADLFEG 123 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSS---GE-EEEEEESCSTSSSSGGG-TTTTTTT
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc---cc-eeecCCCCCCccccchhhcccccCC
Confidence 34688999999999999999998877665555555554421 12 233 456666666666677776
Q ss_pred CeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 172 DRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 172 ~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
..+++- +....+++.++.+.++++.++ ..+..++++ .-+++-++.-.-..+..++++.+.
T Consensus 124 ~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~ 184 (258)
T PF02153_consen 124 RNWILC-PGEDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTLA 184 (258)
T ss_dssp SEEEEE-ECTTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CeEEEe-CCCCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666664 323335678999999999875 355566654 344555555555555556655333
No 96
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.01 E-value=1.5e-08 Score=100.61 Aligned_cols=201 Identities=19% Similarity=0.152 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCC
Q 011650 11 YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPT 90 (480)
Q Consensus 11 ~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~ 90 (480)
.||+.+|..|+++ ||+|++++++ ++++.+++.+..+..++.+ . ......+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~-~----~~~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGE-F----QFRPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCc-E----EEcccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999998 9999999997 7788888755444322211 0 0002345566666 67899999999863
Q ss_pred CcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEee-CCcccccCccccccC
Q 011650 91 KTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILS-NPEFLAEGTAINDLF 169 (480)
Q Consensus 91 ~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~~~G~a~~~~~ 169 (480)
.+.++++.+.+++.++++|+. .....|..+.+.+.+.+.. .-..+.+ +..+..||...+.
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~--v~~g~~~~~~~~~~pg~v~~~-- 131 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARR--ILGGVVTHGAVREEPGVVHHA-- 131 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccC--EEEEEEEEeeEEcCCcEEEEe--
Confidence 246788899999988887764 4455666666666553321 0111222 2233456644333
Q ss_pred CCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH---------------------HHHHHHH
Q 011650 170 KPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA---------------------FLAQRIS 228 (480)
Q Consensus 170 ~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (480)
...++.+|..+.. .+..+.+.++|+..+. ......|+....|.|++.|+ .+.+..+
T Consensus 132 ~~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 132 GLGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred ccccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 2345677875331 2455667777776432 24556799999999999884 2345566
Q ss_pred HHHHHHHHHHHcCCC
Q 011650 229 SVNAMSALCEATGAD 243 (480)
Q Consensus 229 ~~nE~~~l~~~~gid 243 (480)
.++|+..++++.|++
T Consensus 209 ~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 209 LMDEVVRVARAEGVD 223 (293)
T ss_pred HHHHHHHHHHhCCCC
Confidence 789999999999875
No 97
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.98 E-value=3.1e-09 Score=106.15 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=83.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||..+|..++.+ |+ +|+++|++++..+... .++++++... ....++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~----~~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVG----GFDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---Hhhhhhhhcc----CCCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999997 65 8999999766433111 1122222111 11356888899987 89999
Q ss_pred EEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++|...+. ++ ..+++.++++.++|.++.+...+|+ -|.|.+..-.
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di~t~ 126 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDAMTY 126 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHHHHH
Confidence 99999999875521 10 1577888999999999875443333 3577666443
No 98
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.97 E-value=1e-08 Score=94.64 Aligned_cols=210 Identities=14% Similarity=0.138 Sum_probs=133.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCC---------EEEecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKN---------LFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~---------l~~t~d 71 (480)
-||+|+|.|.+|..+|..||.. ||+|..||+.++.++...+.. ++.+..+-++ ...|+ +..|++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~----~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENV----EKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHH----HHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 3899999999999999999998 999999999987665322210 0011111000 11122 356889
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhcCCCce
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNSRGINF 150 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
+.|+.++|=.|-.|+|.. .+++ +..++++...+.+.+|+.. .||+.|+-.- .....+. -
T Consensus 78 l~E~vk~Ai~iQEcvpE~-----------L~lk--k~ly~qlD~i~d~~tIlaSSTSt~mpS~~s--~gL~~k~-----q 137 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPED-----------LNLK--KQLYKQLDEIADPTTILASSTSTFMPSKFS--AGLINKE-----Q 137 (313)
T ss_pred HHHHHhhhhhHHhhchHh-----------hHHH--HHHHHHHHHhcCCceEEeccccccChHHHh--hhhhhhh-----h
Confidence 999999999999999863 2333 6777888887776665532 2355554321 1112211 1
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
.++.+|.. |--- .-...+| -.+- .++++.++.+.+++.++. .++... -|...++-| .+..|.+
T Consensus 138 ~lvaHPvN--PPyf----iPLvElV-PaPw--Tsp~tVdrt~~lM~sigq-~pV~l~----rei~Gf~ln---riq~Ail 200 (313)
T KOG2305|consen 138 CLVAHPVN--PPYF----IPLVELV-PAPW--TSPDTVDRTRALMRSIGQ-EPVTLK----REILGFALN---RIQYAIL 200 (313)
T ss_pred eeEecCCC--CCcc----cchheec-cCCC--CChhHHHHHHHHHHHhCC-CCcccc----cccccceec---cccHHHH
Confidence 34556631 1100 0011222 2222 257889999999999874 344332 234444445 6788999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 231 NAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
||..++....++++.++...++.+
T Consensus 201 ne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 201 NETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHccCcchhhHHHHHhcC
Confidence 999999999999999999988765
No 99
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.96 E-value=2.1e-08 Score=92.74 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=99.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|+|+|.|.+|..+|.+|++. ||+|++-.+ .+++.+...+... ..++. .+.+++++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~-~~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITG-GSNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------ccccc-CChHHHHhcC
Confidence 89999999999999999999998 999998854 4455555544211 12333 3456778999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCc---------------cc-HHHHHHHHHh
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV---------------KT-AEAIEKILMH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~---------------gt-~~~l~~~l~~ 143 (480)
|+||++||-+ ++..+.+++...+. +++||+ .|+|. ++ ++.+++.+..
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999853 35667777877776 788876 56661 11 1223333322
Q ss_pred hcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011650 144 NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW 210 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 210 (480)
...-.-|.-+ ....+..+.. .+ ... -+.+.|+ |.++.+.+.++-+.++ ..++-.++..
T Consensus 125 akVVkAFn~i-~a~~l~~~~~-~~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L~ 182 (211)
T COG2085 125 AKVVKAFNTI-PAAVLADLAK-PG-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPLE 182 (211)
T ss_pred cchhhhhccc-CHHHhccCCC-cC-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeeccccc
Confidence 1100112111 1122222111 11 122 2445566 5889999999999885 3456555544
No 100
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.93 E-value=1.1e-07 Score=95.18 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=94.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|... |++|++++++.++.....+. .++... +++++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~~-s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEVL-TVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCeeC-CHHHHHhcCCE
Confidence 5899999999999999999998 99999988775443322210 123333 77888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|++|||.. ....++ +++.++++++++|+..+.+.....+ ..+.+ +.++. ...|. .
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~---~~~Vi-~vaPn--~ 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPA---DVDVI-MVAPK--G 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCC---CCcEE-EeCCC--C
Confidence 99999842 125555 7788999999988776654433211 11111 23332 33454 2
Q ss_pred cCcccccc----CCCCeEE-EEccCCcchHHHHHHHHHHHhccCC
Q 011650 161 EGTAINDL----FKPDRVL-IGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~~~~----~~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
||..+... ...+-++ +..+ .+.++.+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 33322221 1112233 2222 247788999999999874
No 101
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.92 E-value=2.2e-09 Score=92.70 Aligned_cols=93 Identities=28% Similarity=0.274 Sum_probs=64.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||.|.+|..++..|.++ ||+|.++ .++++..+++.... +... ..++++.+..+|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~~-~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAGA-ILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------cccc-ccccccccccCC
Confidence 6999999999999999999998 9999886 67776766666421 1122 234566789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh--CCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV--SKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~--l~~~~iVi~~STv 129 (480)
++|||||. +.+.++.++|... .+++++|+-+|..
T Consensus 71 lv~iavpD---------------daI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 71 LVFIAVPD---------------DAIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp EEEE-S-C---------------CHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred EEEEEech---------------HHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 99999984 2478889999987 7899999988743
No 102
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.83 E-value=5.8e-08 Score=98.03 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=77.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||.++|..|... |++|++||++++.... ..++++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999998754211 11235678888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... +...+ ..+.+.+.++++.++|+.|-...=..+.+.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998632 22222 345677889999999987754433445566667653
No 103
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.79 E-value=6.2e-08 Score=97.13 Aligned_cols=119 Identities=24% Similarity=0.299 Sum_probs=79.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..++.. |+ +|+++|+++++.+..... +.+.. .......+++.++|+++ +++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~----~~~~~~~~i~~~~d~~~-~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAA----PVEGFDTKITGTNDYED-IAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhh----hhcCCCcEEEeCCCHHH-HCCC
Confidence 79999999999999999999987 55 999999998775433210 00000 00011245677788854 8999
Q ss_pred CEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 80 NIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+||+++..|..... ++ .-++..++++.+.+.++.+++.+|+. |.|....
T Consensus 72 DiVii~~~~p~~~~~---~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~~ 125 (307)
T PRK06223 72 DVVVITAGVPRKPGM---SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDAM 125 (307)
T ss_pred CEEEECCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 999999987764311 10 12446678888888888765544443 5665553
No 104
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.76 E-value=3.7e-07 Score=89.46 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=124.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-----eEEEEeCCH-------HHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-----EVAVVDISV-------PRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-----~V~~~D~~~-------~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
.||+|||.|+||+++|+.+..+..++ +|..|-..+ ...+-+|+. ++.-|-|+.+ ...++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 37999999999999999998753223 455554322 222334443 3444455532 2457899
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-C---cc-cHHHHHHHHHh
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-P---VK-TAEAIEKILMH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~---~g-t~~~l~~~l~~ 143 (480)
++|+.+++.+||+++..+|.. ++..++++|..+++++...|..+.. . +| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 999999999999999999842 4577899999999999887765532 2 33 23456677766
Q ss_pred hcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH
Q 011650 144 NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA 221 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~ 221 (480)
.. |....++.+|..+.+-. .+.+. .-.+|+.+. .+.-..++++|++.. .......|..+.|.+.-+.|.
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa--~~~f~--e~tIg~~~~---~~~~~~l~~lf~~p~-FrV~~~~D~~~VEi~GaLKNV 229 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVA--NEKFC--ETTIGYKDK---KEAGILLKKLFRTPY-FRVVVVEDADGVEICGALKNV 229 (372)
T ss_pred Hh-CCCceeecCCchHHHHH--hcccc--ceeEeccch---hhcchHHHHHhCCCc-eEEEEeccchHhHHhhhHHhH
Confidence 54 35566778887665432 12222 234677632 333335888888743 223445788999999988885
No 105
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.75 E-value=1.2e-06 Score=82.57 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=146.1
Q ss_pred CceEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH
Q 011650 1 MVKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60 (480)
Q Consensus 1 ~mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~ 60 (480)
||||+|.|.|+ -|..||..||+. ||+|++.|.|.+-.+ +++.+.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~d--------------d~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMD--------------DEHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccC--------------HHHHHH
Confidence 79999999995 478899999999 999999998754322 111222
Q ss_pred hcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-HHHHH
Q 011650 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEK 139 (480)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~ 139 (480)
+...+++.++|-.++++++++.++-+| +.. ....+.+.|.++++.+.+|.+..|++|-.. ..+..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFTP--FGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFTP--FGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEecc--cch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 223467777777778999999999965 421 235678999999999999988888876543 33444
Q ss_pred HHHhhcCCCceEEe-eCCcccccCccccccCCCCeEEEEccCC----cchHHHHHHHHHHHhccCCCCeEEeCCchhHHH
Q 011650 140 ILMHNSRGINFQIL-SNPEFLAEGTAINDLFKPDRVLIGGRET----PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV 214 (480)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~----~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.|+-.. .++.+. ++|. ..||...++ .+++|+..+ .++++..++..++.++.++ ..++.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~-----~yviagr~t~g~elATeEQi~r~velaes~Gk--~~yv~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHG-----HYVIAGRSTEGKELATEEQIERCVELAESTGK--EVYVLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCc-----eEEEeccCCCceeeccHHHHHHHHHHHHhcCC--ceEecCHHHHHH
Confidence 443221 233332 3553 356665433 345665433 2246788888999998864 344433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCC-CCCCCccccCCCCccccchhhhHHHHHHHHHHCCCc
Q 011650 215 SKLAANAFLAQRISSVNAMSALCEA-TGADVSQVSHAIGFD-SRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~gid~~~v~~~~~~~-~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~ 290 (480)
+.=+.-...+..++.+-+......+ .|+..+.+-+-+-.. ..+ ..+--..|++|-.=.-|+..|...++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqTm--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 2222223334455555555555553 355443332211100 000 1111223455554455888888888876543
No 106
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.71 E-value=4.9e-08 Score=97.77 Aligned_cols=120 Identities=26% Similarity=0.397 Sum_probs=83.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|+|+ |++|..+|..|+.. |+ +|+++|+++ +.++++....++.+ .+.......++++++|.++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d----~~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYD----ALAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhh----chhccCCCcEEEECCCHHH-hCC
Confidence 79999998 99999999999987 65 599999954 44455544333321 1111100124666778665 999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+|+.+|...+. .+.|+ +.++++.+.|.++.+.+.+|+..++++..|
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 9999999998865421 12455 778889999998887666677766666665
No 107
>PRK07574 formate dehydrogenase; Provisional
Probab=98.70 E-value=2.3e-07 Score=95.14 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=80.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|... |.+|++||++....+.... .+++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 5899999999999999999887 9999999987532221111 123445678898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-. +++..+. -++....++++.++|+.+....-..+.+.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99999842 2333332 24567778999999998877666667777777764
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=98.67 E-value=3.5e-07 Score=93.81 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=79.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|..- |.+|++||++....+.... .++....+++++++.||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5799999999999999999886 9999999987432221111 123445688898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|... +...+. -+++...++++.++|+.+....-..+.+.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999998532 233332 24577889999999998876655566677777754
No 109
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.67 E-value=3.3e-07 Score=92.80 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=78.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||+++..... .. ..... .+++++++.||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 4899999999999999999887 9999999997543211 11 01222 467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... ++..+. -++..+.++++.++|+.|+...-..+.+.+.|++.
T Consensus 208 V~l~lP~t~-----------~T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTK-----------ETYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 999998532 122221 23566778999999999988777777787777764
No 110
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.64 E-value=1.6e-07 Score=95.01 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=78.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|++. .|.+|++||+++... ... .+..++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-~g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKG-YGSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 6899999999999999999542 288999999876432 111 12345678888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+.. ....+.++++.++|+.|+...-.++.+...+++.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 21211 3456778999999999988777777777777653
No 111
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.59 E-value=6.1e-06 Score=82.68 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=89.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. ++..+ +..++++.||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 34444444321 23333 4677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+|++|||.. .....+.+++.+.++++.+|.....+.... +...+.+ +.++ +--.|.-
T Consensus 62 iVvLaVpp~--------------~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~---~~~~~~~---~~~V-vrvmPn~-- 118 (314)
T TIGR00465 62 LIMNLLPDE--------------VQHEVYEAEIQPLLKEGKTLGFSHGFNIHF---VQIVPPK---DVDV-VMVAPKG-- 118 (314)
T ss_pred EEEEeCCcH--------------hHHHHHHHHHHhhCCCCcEEEEeCCccHhh---ccccCCC---CCcE-EEECCCC--
Confidence 999999832 013445677888888888776544443222 2222221 1232 2234532
Q ss_pred cCccc-cc---cCCCCeEE-EEccCCcchHHHHHHHHHHHhccCC
Q 011650 161 EGTAI-ND---LFKPDRVL-IGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~-~~---~~~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
|+..+ .. -...+-++ ++.+ .+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~~~---~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVEQD---PTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 22211 00 01112232 2221 256788899999999874
No 112
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.59 E-value=4e-07 Score=90.73 Aligned_cols=104 Identities=9% Similarity=0.116 Sum_probs=76.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....+++++++.||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 4799999999999999987765 9999999986321 11 0 0113478888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... ...+. -++....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999985321 12121 24456678999999999988777777888888764
No 113
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.57 E-value=3.2e-07 Score=90.71 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|+++++.....+.... .++.+ .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 4799999999999999999998 9999999875433332221 12333 378889999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
|++++|.+.+ ..++ +.+.+.++++++++..-.
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCC
Confidence 9999996421 2233 568899999998876543
No 114
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.57 E-value=1e-06 Score=88.37 Aligned_cols=110 Identities=21% Similarity=0.401 Sum_probs=74.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ | ++|.++|+++++.+. +... .++.++ ....++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~~- 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYAD- 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHHH-
Confidence 7999999999999999999998 6 699999999877654 3322 222211 1223567654
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||+|++.|..... + +. +.+.+++..+.|.++.+.+.+++. |.|...
T Consensus 65 l~~aDiViita~~~~~~~~---~-r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tNP~d~ 121 (308)
T cd05292 65 CKGADVVVITAGANQKPGE---T-RLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TNPVDV 121 (308)
T ss_pred hCCCCEEEEccCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 9999999999998765411 1 12 334566677777776655444443 455544
No 115
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.57 E-value=2e-07 Score=83.41 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=74.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|+|+|.||..++..|++.+ +++|+++|+++++.+++.+.... .......++.++++.++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 57999999999999999999872 37899999999888776531100 0000123455666789999
Q ss_pred EEEEccCCCC-cCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
||.|+|.+.. .+ ..-+ . ...++++++|++.|++|+.+ .+.+..++.
T Consensus 85 vi~~~~~~~~~~~------~~~~-----~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD------ELPL-----P----PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC------CCCC-----C----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987653 10 0000 0 11257899999999987665 555555543
No 116
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.55 E-value=7.3e-07 Score=87.42 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=54.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. +....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987511455 557999999888765421 134567888877899
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|+|.
T Consensus 63 DvVvi~a~~ 71 (265)
T PRK13304 63 DLVVECASV 71 (265)
T ss_pred CEEEEcCCh
Confidence 999999863
No 117
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.53 E-value=7.7e-07 Score=87.48 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||||||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 68999999999999999998632478876 7899998877665421 11234567888788999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEE
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQI 152 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+|++|+|+..+ .+.... .++.|+-|+..|+......+++.+..++.+ ..+++
T Consensus 70 ~Vvi~tp~~~h---------------~e~~~~---aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 70 IVVEAAPASVL---------------RAIVEP---VLAAGKKAIVLSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred EEEECCCcHHH---------------HHHHHH---HHHcCCcEEEecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 99999886421 222222 334566555555433333455555555543 44444
No 118
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.53 E-value=1.3e-06 Score=77.28 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=75.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|.++|..|..+..+.++.++|+++++.+.... +++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~--------Dl~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEAL--------DLSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH--------HHHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeeh--------hhhhhhhh-ccccccccccccccccccc
Confidence 89999999 99999999999987555789999999887665442 11111111 1112334444455699999
Q ss_pred EEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|+++...|..+. .++ ..+...+++..+.|.++.+.+ +++. -|.|....
T Consensus 72 ivvitag~~~~~g---~sR~~ll~~N~~i~~~~~~~i~~~~p~~-~viv-vtNPvd~~ 124 (141)
T PF00056_consen 72 IVVITAGVPRKPG---MSRLDLLEANAKIVKEIAKKIAKYAPDA-IVIV-VTNPVDVM 124 (141)
T ss_dssp EEEETTSTSSSTT---SSHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHHH
T ss_pred EEEEecccccccc---ccHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEE-eCCcHHHH
Confidence 9999998765431 111 122344566667777777544 4433 36676643
No 119
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.49 E-value=1.4e-06 Score=87.13 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=75.7
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|+||..+|..++.+ |. +|+++|+++++.+...- ++.+.... ....+++.++|.++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999987 65 99999999875432221 01111110 01245777778664 899999
Q ss_pred EEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+|+.+|...+. ++ .-++..++++++.|.++.+++.+|+. |.|...
T Consensus 70 VIit~g~p~~~~~---~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~--sNP~di 120 (300)
T cd01339 70 VVITAGIPRKPGM---SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV--TNPLDV 120 (300)
T ss_pred EEEecCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 9999988765421 11 12556677888888888866554443 355544
No 120
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.45 E-value=1.5e-06 Score=79.98 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=72.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||++......... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 4799999999999999999987 9999999999876542222 1233 4588898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|...... .-.+ +.....++++.++|+.+-...=..+.+.+.|++.
T Consensus 95 v~~~~plt~~T~-----~li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETR-----GLIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTT-----TSBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccc-----eeee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 999998422111 1222 2345678899999986533322234466777653
No 121
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.44 E-value=7.9e-07 Score=79.30 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|+|+|.||+.+|..|++. |++|.++++.+ +.+.+++....+.....+.. ........+..+....+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDET-----VQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEE-----EEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEeccccee-----cccccccCcchhccCCCcEEE
Confidence 78999999999999999997 99999999998 88888764433321110000 001112233323368999999
Q ss_pred EEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHH
Q 011650 84 VSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l 141 (480)
+||++. + ++++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~------------~---~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY------------Q---LEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG------------G---HHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc------------c---hHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 999853 2 36788889999998866653 345556666665554
No 122
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.44 E-value=2.8e-06 Score=85.31 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=85.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|||||+|.+|..+|..+..- |.+|++||+ .+...+... ......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~~---------------------~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGVD---------------------GVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhccc---------------------cceecccHHHHHhhCC
Confidence 4799999999999999999887 999999999 332211111 1233467888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|.+.+|-- +++..+.. .+....++++.++|+.+=.+.=..+.+.+.|++... +.|+ |.+|
T Consensus 200 iv~lh~PlT-----------~eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV---f~~E 263 (324)
T COG0111 200 ILTLHLPLT-----------PETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV---FEEE 263 (324)
T ss_pred EEEEcCCCC-----------cchhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC---CCCC
Confidence 999999852 22232322 234456889999999775444444557777765422 2343 5667
Q ss_pred ccccCccccccCCCCeEE
Q 011650 158 FLAEGTAINDLFKPDRVL 175 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv 175 (480)
-..+++. ++..+.|+
T Consensus 264 Pl~~~~p---L~~~pnV~ 278 (324)
T COG0111 264 PLPADSP---LWDLPNVI 278 (324)
T ss_pred CCCCCCh---hhcCCCeE
Confidence 6655533 44444454
No 123
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.43 E-value=3.3e-06 Score=72.09 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=56.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
|||+|||+|.+|......+.+..++.++. ++|+++++.+.+.+. -++...+|+++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 69999999999999998888764577766 689999988876541 13447788888776 7
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 63 ~D~V~I~tp~~ 73 (120)
T PF01408_consen 63 VDAVIIATPPS 73 (120)
T ss_dssp ESEEEEESSGG
T ss_pred CCEEEEecCCc
Confidence 89999998864
No 124
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.42 E-value=1.4e-06 Score=87.21 Aligned_cols=107 Identities=7% Similarity=0.075 Sum_probs=73.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||++++... +.. ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 4799999999999999999987 999999998653211 000 01112467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.. +++..+. -+.....++++.++|+.+=.+.=-.+.+.+.|++.
T Consensus 194 vv~~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNT-----------PETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCC-----------HHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 99999853 2223232 24566778999999986643333345566667654
No 125
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.41 E-value=3.4e-06 Score=90.62 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=77.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+....- .... ...... ++++.++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~-~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISPE-RAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCChh-HHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 4799999999999999999887 99999999853211 1111 123334 78888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... ...+.. .+....++++.++|+.|..+.=..+.+.+.|++.
T Consensus 198 V~l~lP~t~~-----------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPE-----------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChH-----------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 9999985322 122221 4566778999999998877666667777777654
No 126
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.38 E-value=4.2e-06 Score=89.91 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=77.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+.... +.... -+....++++++++.||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999984221 11111 123445678898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+.. ......++++.++|+.|..+.=..+.+.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985322 122221 3445678999999999887666667777777764
No 127
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.38 E-value=3.8e-06 Score=83.93 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=74.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|++|.++|..++.+ | ++++++|+++++++.+... ++.........++..++|++ .+++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCE
Confidence 68999999999999999987 6 7899999999888776652 22211110112345566765 5999999
Q ss_pred EEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+|..+|.... .+ +. ....+++..+.|.++.+. .+|++- |.|....
T Consensus 70 VIitag~p~~~~---~~-R~~l~~~n~~i~~~~~~~i~~~~p~-~~viv~-sNP~d~~ 121 (300)
T cd00300 70 VVITAGAPRKPG---ET-RLDLINRNAPILRSVITNLKKYGPD-AIILVV-SNPVDIL 121 (300)
T ss_pred EEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc-cChHHHH
Confidence 999999886541 11 12 223455666677777644 444432 4665553
No 128
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.35 E-value=2.3e-05 Score=73.53 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=37.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999998 9999999999988887764
No 129
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.34 E-value=0.00017 Score=67.33 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=108.5
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||. |.||..++..|.+. |+.|+ +.+||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999988 88874 13689
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.+.++++. .+|++-+++... +. +. . .+ ++..+|-+.
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~~----i~---~~-~--~~-~vg~HPMfG- 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKWP----FK---KY-S--GK-IVSIHPLFG- 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCHH----HH---Hh-c--CC-EEecCCCCC-
Confidence 999999842 2234444432 356665544321 22 11 1 13 467788764
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|..+..+++. .+++-.. ..+++..+.++++++ + ..+..++++.- +-.+|++.-+..+....
T Consensus 81 p~~a~~~lf~--~~iv~~~--~~~~~~~~~~~~l~~--G--~~~~~~t~eeH-----------D~~~A~ishLpH~ia~a 141 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIND--ISRDNYLNEINEMFR--G--YHFVEMTADEH-----------DLLMSEIMVKPYIISMI 141 (197)
T ss_pred CCcCcccccc--eEEEECC--CCCHHHHHHHHHHHc--C--CEEEEeCHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 4455455542 3333232 235677888999987 2 35666776542 22222222222221110
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHC-CCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN-GLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
-.+. . . .+ .++|| + .++++|+.. +-+ ..+|......|.+- ..++++++.++
T Consensus 142 l~~~-------~-~-----~~--~t~~f------r---~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~~ 193 (197)
T PRK06444 142 LKDI-------K-S-----DI--KTGSF------D---KLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERLN 193 (197)
T ss_pred HccC-------C-C-----CC--CCccH------H---HHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHHh
Confidence 0010 0 0 11 22333 3 444556543 333 67999999999886 66677777664
No 130
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.33 E-value=5.1e-06 Score=83.30 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=74.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..++......++.++|+++++.+..... +.....-.....++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999998874345899999998765543321 000000000124666688886 999999
Q ss_pred EEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||++...|... +.++ .-+...+++..+.|.++.+.+ ++++- |.|...
T Consensus 75 vvitaG~~~k~---g~~R~dll~~N~~i~~~~~~~i~~~~p~~-~vivv-sNP~d~ 125 (312)
T cd05293 75 VIVTAGARQNE---GESRLDLVQRNVDIFKGIIPKLVKYSPNA-ILLVV-SNPVDI 125 (312)
T ss_pred EEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEc-cChHHH
Confidence 99998876543 1111 112234566667777775444 44332 456554
No 131
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.32 E-value=9.9e-06 Score=81.19 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=73.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.+ | ++|+++|+++++.+.+... +...... ...... .+.+.++ +.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~--g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~-~~~~~~i~~~~~~~-l~~ 68 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ--GIADELVLIDINEEKAEGEALD--------LEDALAF-LPSPVKIKAGDYSD-CKD 68 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHhHhh--------HHHHhhc-cCCCeEEEcCCHHH-hCC
Confidence 5899999999999999999988 6 6999999999887765432 2111100 011222 3455554 899
Q ss_pred CCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+||+|++.|.... .++. -+...+++..+.|.++.+. .+|++ -|.|..+.-
T Consensus 69 aDIVIitag~~~~~g---~~R~dll~~N~~i~~~~~~~i~~~~~~-~~viv-vsNP~d~~~ 124 (306)
T cd05291 69 ADIVVITAGAPQKPG---ETRLDLLEKNAKIMKSIVPKIKASGFD-GIFLV-ASNPVDVIT 124 (306)
T ss_pred CCEEEEccCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEE-ecChHHHHH
Confidence 999999998875431 1111 1223355666666666654 44433 246666543
No 132
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.32 E-value=3.2e-06 Score=72.84 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCC-------c-cc--cCCCCccccchhhhHHH
Q 011650 210 WSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGP-------K-FL--NASVGFGGSCFQKDILN 279 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~-------~-~~--~pg~g~gG~c~~kD~~~ 279 (480)
+.+..+|+++|.+...++..+.|...++++.|+|++.+.++++..+.-++ . ++ .+.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 36789999999999999999999999999999999999999997652111 1 11 35677999999999999
Q ss_pred HHHHHHHCCCchhhhHHHHHH
Q 011650 280 LVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~ 300 (480)
..+.+++.|+| .++.+.+.
T Consensus 81 ~~~~a~~~g~~--~p~~~~~~ 99 (122)
T PF14833_consen 81 ALDLAKEAGVP--LPLGSAAR 99 (122)
T ss_dssp HHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHH
Confidence 99999999998 66666543
No 133
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.27 E-value=4.9e-06 Score=82.45 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..|... |.+|+++++++++.+.+.+... ..+ ...++.+.+.++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~----------------~~~-~~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGL----------------IPF-PLNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCC----------------eee-cHHHHHHHhccCCE
Confidence 4799999999999999999987 8999999999987665543110 001 12345666889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|+|.+.. -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 9999875321 1234456788999999998886663
No 134
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.23 E-value=1e-05 Score=84.66 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=59.4
Q ss_pred ceEEEECCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|.||.+++. .++. ..+|++|++||+++++.+.+... +...+... ...+++.|+|+++++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~--------~~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL--------AKKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999998776 3431 12488999999999998876542 11122111 124678899999999
Q ss_pred hcCCEEEEEccCCC
Q 011650 77 REANIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||++++...
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998653
No 135
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.22 E-value=1.2e-05 Score=81.02 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=71.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..++.. |+ +|.++|+++++...-.-. +....... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld--------~~~~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALD--------ISHSNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHH--------HHhhhhccCCCeEEEECCCHH-HhCCC
Confidence 5899999999999999999887 74 899999999864321100 00000000 112566678886 58999
Q ss_pred CEEEEEccCCCCcCCCCC-----CC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGA-----GK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~-----~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||++...|... + . ++ .-+...+++..+.|.++.+++ ++++- |.|...
T Consensus 76 DiVI~tag~~~~~-~--~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv~-sNP~di 133 (321)
T PTZ00082 76 DVVIVTAGLTKRP-G--KSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIVI-TNPLDV 133 (321)
T ss_pred CEEEECCCCCCCC-C--CCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEe-cCcHHH
Confidence 9999998665422 0 0 00 113444666777777777554 33332 345443
No 136
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.21 E-value=1.1e-05 Score=71.97 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|..|...|.+|.+. |.+|++-.+..+ ..++.++ .+++. .+.+|+++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~-------------------~Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKA-------------------DGFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHH-------------------TT-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHH-------------------CCCee-ccHHHHHhhCC
Confidence 5899999999999999999998 999998877655 4444443 23443 46788899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|++.+|... -.+++ ++|.++++++++++...
T Consensus 63 vV~~L~PD~~---------------q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDEV---------------QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HHH---------------HHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChHH---------------HHHHHHHHHHhhCCCCCEEEeCC
Confidence 9999987421 24454 88999999999988644
No 137
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.19 E-value=2.2e-05 Score=81.67 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=75.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999985321 00 123345578999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|-.. +...+. -++....++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMI--GAEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999998421 222222 13355678999999998866555566677777654
No 138
>PLN02928 oxidoreductase family protein
Probab=98.19 E-value=2.1e-05 Score=80.04 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||++...-....-+ .+ ......+... . . ...+++++++.||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~-~~--~~~~~~~~~~---~-~-~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL-IP--NGDVDDLVDE---K-G-GHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc-cc--cccccccccc---c-C-cccCHHHHHhhCCE
Confidence 4799999999999999999876 99999999874321110000 00 0000000000 0 1 13478888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... ...+. -++....++++.++|+.+-...=-.+.+.+.|++.
T Consensus 230 Vvl~lPlt~~-----------T~~li--~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIV--NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhccc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999984321 12122 23456678999999987643332334566666653
No 139
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.19 E-value=3.5e-05 Score=75.60 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=101.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aDv 81 (480)
+|||||.|.||.-+|..|.++ ||.|++.||++ .+.+.+.. | ....+++.+. -+..|+
T Consensus 54 ~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y-----------------g-~~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY-----------------G-SAKFTLLHDLCERHPDV 111 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh-----------------c-ccccccHHHHHhcCCCE
Confidence 799999999999999999999 99999999976 34443310 1 1122344442 268999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEE---eeCCc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQI---LSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v---~~~Pe 157 (480)
|++||.- ..++.+++...+. ++.+++++...++..-..+.+.+.|.+. .|+-+ .++|+
T Consensus 112 vLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd---fDIlctHpmfGPk 173 (480)
T KOG2380|consen 112 VLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD---FDILCTHPMFGPK 173 (480)
T ss_pred EEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc---cceEeecCCcCCC
Confidence 9999742 2245666666655 7889999876555322222344444432 23322 23555
Q ss_pred ccccCccccccCCCCeEE----EEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVL----IGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv----iG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
...++ ....+-|+ +|- ....++.+|.+.++|..... ..+.++.+ |--|+...++.-++.++
T Consensus 174 svnh~-----wqglpfVydkvRig~--~~~r~ercE~fleIf~cegc--kmVemS~e--eHDkiaAdsQfVTHtag 238 (480)
T KOG2380|consen 174 SVNHE-----WQGLPFVYDKVRIGY--AASRPERCEFFLEIFACEGC--KMVEMSYE--EHDKIAADSQFVTHTAG 238 (480)
T ss_pred cCCCc-----cccCceEEEEeeccc--cccchHHHHHHHHHHHhcCC--eEEEEEee--cccccccchhHHHHHHH
Confidence 33322 11112222 331 11236789999999998754 23333322 33444444444444444
No 140
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=6.2e-06 Score=81.35 Aligned_cols=73 Identities=27% Similarity=0.368 Sum_probs=57.5
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.| .||.|||..|.++ |++|++|++. +.+++++++.||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~---------------------------------t~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSR---------------------------------STDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhcCC
Confidence 479999996 9999999999998 9999999753 125667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +... .+++|++||+.|+.
T Consensus 205 IVIsavg~~~~--------------v~~~------~ik~GaiVIDvgin 233 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDAD------WLKPGAVVIDVGIN 233 (301)
T ss_pred EEEEecCChhc--------------ccHh------hccCCcEEEEeccc
Confidence 99999986521 1221 27899999987654
No 141
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.15 E-value=9.6e-05 Score=71.64 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=100.8
Q ss_pred CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHH
Q 011650 26 SIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTY 105 (480)
Q Consensus 26 G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~ 105 (480)
.++|++++|++++.+.+.+. -+...+++..+++..||+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 124556777777889999999998 52 3
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchH
Q 011650 106 WESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGM 185 (480)
Q Consensus 106 v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~ 185 (480)
+.++++++.+.+.++++|+. ....=+.+.+.+.+... .. ++ |..|-....- ......+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~ivS--~~agi~~~~l~~~~~~~---~~--iv----R~mPn~~~~~-~~g~t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLIS--IAAGVTLEKLSQLLGGT---RR--VV----RVMPNTPAKV-GAGVTAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEEE--ecCCCCHHHHHHHcCCC---Ce--EE----EECCChHHHH-hCCeEEEecCC--CCCH
Confidence 57778888877776777663 33333344555555321 11 11 2222211111 11112222222 2246
Q ss_pred HHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 186 KAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 186 ~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+..+.+.++|+.++. .+.+. -..-...=-+.-+--+....++..+..-+.+.|++.++..+.+.
T Consensus 122 ~~~~~v~~lf~~~G~--~~~v~-E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 122 EDRALVLALFKAVGE--VVELP-EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHHHHHHHHHHhCCC--EEEEC-HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677899999999863 44442 11101000111112233455566677778888999888887765
No 142
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.15 E-value=3.2e-05 Score=77.56 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=69.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+..... . ..+. ..++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~----~-------------------~~~~-~~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK----N-------------------EEYE-RVSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc----c-------------------cCce-eecHHHHhhcCCE
Confidence 4799999999999999988765 89999999853210 0 0122 2368888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|++++|-... ...+. -+.....++++.++|+.+=.+.=-.+.+.+.|++
T Consensus 200 v~lh~Plt~~-----------T~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEK-----------TKNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCch-----------hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 9999984221 11111 1234566899999998664333334456666665
No 143
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.14 E-value=2.2e-05 Score=76.97 Aligned_cols=118 Identities=23% Similarity=0.332 Sum_probs=78.0
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 4 ICCIGA-GYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+|||+ |.||..+|..|+.. | .+|.++|+++++.+..... +..........+++.++|+++++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~--~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~ 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG--SVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKD 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC--CCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCC
Confidence 689999 99999999999987 6 7999999998776654431 1111111112467788887788999
Q ss_pred CCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++...|... + .++ .-+...+++..+.+.++.+ +.++++- |.|.+....
T Consensus 71 aDiVv~t~~~~~~~-g--~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~-tNP~d~~t~ 127 (263)
T cd00650 71 ADVVIITAGVGRKP-G--MGRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVV-SNPVDIITY 127 (263)
T ss_pred CCEEEECCCCCCCc-C--CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHHHH
Confidence 99999988655432 1 010 1123456677777777774 4555443 577766443
No 144
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.14 E-value=4.4e-05 Score=76.97 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=71.3
Q ss_pred ceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|||||+|.+|..+|..+. .- |.+|.+||+....-. ... .+.++ .++++.++.||
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f--gm~V~~~~~~~~~~~-~~~-------------------~~~~~-~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF--NMPILYNARRHHKEA-EER-------------------FNARY-CDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC--CCEEEEECCCCchhh-HHh-------------------cCcEe-cCHHHHHHhCC
Confidence 47999999999999999886 44 889999998632110 000 11233 37888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++|-.. ++..+. -+.....++++.++|+.+=.+.=-.+.+.+.|++.
T Consensus 203 vv~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 203 FVCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999998422 222222 23355678999999986644333345577777654
No 145
>PRK15076 alpha-galactosidase; Provisional
Probab=98.13 E-value=2.6e-05 Score=81.60 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=57.5
Q ss_pred CceEEEECCChhHHHHHH--HHH--HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMA--VIA--LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~--~La--~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++.+....- +...+... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 789999999999977765 454 223467999999999887743220 11111111 12457889998888
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998754
No 146
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.12 E-value=2.1e-05 Score=78.40 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=69.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||.|.+|..++..|... |.+|+++|+++++.+...+-.. ......++.+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 4899999999999999999988 8999999999887665543110 01111345566789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|.+. ..+...+.++++.+|++.++.|.++
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987421 1234556678899999988777664
No 147
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.12 E-value=1.5e-05 Score=81.88 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=74.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+..... . +... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~-------------------~~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----E-------------------GDGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----c-------------------cCcc-ccCHHHHHhhCCE
Confidence 4799999999999999999987 99999999753210 0 0111 2467888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|--.. + ...+..+. -+.....+++++++|+.|..+.-..+.+.+.+++.
T Consensus 171 V~lh~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKE--G-----EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCC--c-----cccccccC--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999984211 0 01111121 13455678999999998877666666677777653
No 148
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.08 E-value=8.2e-05 Score=74.80 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=74.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|..+..- |.+|..||+.+. -+.-.. .+.++.+ +++.++.||+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F--gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF--GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 5899999999999999999843 899999999864 111111 2244555 8888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+.+|-- ++...+.. +...+.++++.++|+.+=.+.=-.+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99999842 23333322 3455678999999986644333345566777664
No 149
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.07 E-value=3.8e-05 Score=76.84 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=71.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhc-CCCEEE-ecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR-GKNLFF-STDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~-~~~l~~-t~d~~~a~~~aD 80 (480)
||+|||+|.+|.++|..|+.+...-++.++|+++++.+..... +.... ... ..+.+. +.|+++ +++||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D--------L~~~~-~~~~~~~~~i~~~~y~~-~~~aD 70 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD--------FHHAT-ALTYSTNTKIRAGDYDD-CADAD 70 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH--------HHhhh-ccCCCCCEEEEECCHHH-hCCCC
Confidence 7999999999999999998873224899999988765433221 00000 000 012222 456654 99999
Q ss_pred EEEEEccCCCCcCCCCCCC-CC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGK-AA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~-~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++...|..+ +.++ +. +.+.+++..+.+.++.+. .+++. -|.|..+...
T Consensus 71 ivvitaG~~~kp---g~tr~R~dll~~N~~I~~~i~~~i~~~~p~-~i~iv-vsNPvDv~t~ 127 (307)
T cd05290 71 IIVITAGPSIDP---GNTDDRLDLAQTNAKIIREIMGNITKVTKE-AVIIL-ITNPLDIAVY 127 (307)
T ss_pred EEEECCCCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEE-ecCcHHHHHH
Confidence 999998876543 1121 12 234455666666666644 44333 4677666443
No 150
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.07 E-value=3.1e-05 Score=77.99 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=71.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..++.. | .++.++|+++++.+...-.. ....... ...+++.++|++ ++++|
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl--------~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDL--------KHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHH--------hhhccccCCCeEEEeCCCHH-HhCCC
Confidence 6999999999999999999887 6 68999999987654321100 0000000 012456667887 58999
Q ss_pred CEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||++...|.... .+ +. ....+++..+.+.++.++..+++. |.|...
T Consensus 75 DiVVitag~~~~~g---~~-r~dll~~n~~i~~~i~~~i~~~~p~a~vivv--sNP~di 127 (319)
T PTZ00117 75 DVVVITAGVQRKEE---MT-REDLLTINGKIMKSVAESVKKYCPNAFVICV--TNPLDC 127 (319)
T ss_pred CEEEECCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cChHHH
Confidence 99999995543220 00 11 113456777777777654433333 455544
No 151
>PLN02602 lactate dehydrogenase
Probab=98.06 E-value=4.3e-05 Score=77.66 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..++.+....++.++|+++++.+..... +...........++.++++++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998773234899999998766543321 111100000123444467776 899999
Q ss_pred EEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||++...|... +.+ +.| ...+++..+.|.++.+.+.+|+. |.|..+..
T Consensus 109 VVitAG~~~k~---g~t-R~dll~~N~~I~~~i~~~I~~~~p~~ivivv--tNPvdv~t 161 (350)
T PLN02602 109 CIVTAGARQIP---GES-RLNLLQRNVALFRKIIPELAKYSPDTILLIV--SNPVDVLT 161 (350)
T ss_pred EEECCCCCCCc---CCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCchHHHH
Confidence 99998766433 111 222 23455666667776554443333 46665543
No 152
>PLN02306 hydroxypyruvate reductase
Probab=97.98 E-value=0.00013 Score=75.20 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCC-CCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR-INAWNSDQL-PIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|||||+|.+|..+|..+++.+ |.+|++||+.... .+....... ...+.+.. ....+...+++++++.|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMEEVLREA 237 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccc-------cccccccCCHHHHHhhC
Confidence 47999999999999999986433 8999999987532 111100000 00000000 00123346889999999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|+|++++|-.. ++..+.. .+....++++.++|+.+-.+.=-.+.+.+.|++
T Consensus 238 DiV~lh~Plt~-----------~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 238 DVISLHPVLDK-----------TTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CEEEEeCCCCh-----------hhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999987421 2222222 345567899999998763332223446666655
No 153
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.97 E-value=6.4e-05 Score=74.59 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=73.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||.|.+|.++|..|+.+..+.++.++|+++++.+.... ++.....-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhcchhccCceEEecCCChhh-hcCCC
Confidence 6999999999999999999876556699999999544332111 111000000 1122333234555 99999
Q ss_pred EEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|+++-.-|..+ |.+ +. +.+-+++..++|.++.+.+.+++ -|.|..+.-.
T Consensus 72 iVvitAG~prKp---Gmt-R~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ty 126 (313)
T COG0039 72 IVVITAGVPRKP---GMT-RLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDILTY 126 (313)
T ss_pred EEEEeCCCCCCC---CCC-HHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHHHH
Confidence 999999766544 111 22 23455666677777766333333 4788777544
No 154
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.96 E-value=6.6e-05 Score=75.86 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=70.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..+....+..+|.+||+++++.+.+.+.. ++. .-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~~-g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SDY-EVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hhh-CCcEEEeCCHHHHhccCCE
Confidence 479999999999998877766544679999999999988776421 000 0135678899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. |=+ . ...+++|+.|...++..|+.
T Consensus 196 VitaT~s~~----------P~~----~-----~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 196 LVTTTPSRK----------PVV----K-----ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred EEEecCCCC----------cEe----c-----HHHcCCCCEEEecCCCCccc
Confidence 999987531 111 0 23568899887655554443
No 155
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.96 E-value=5e-05 Score=76.35 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=56.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..++..+....+..+|++|++++++.+++.+.. ++ ....+....++++++.+||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999987665333689999999999988876521 00 00135667888888999999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|++.+
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98887643
No 156
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.95 E-value=0.00015 Score=72.88 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..++.. |. ++.++|+++++.+..... +..... .. .+.+. +++++ .+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~D--------l~~~~~-~~-~~~~i~~~~~~-~~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMD--------LSHAVP-FT-SPTKIYAGDYS-DCKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHH--------HHhhcc-cc-CCeEEEeCCHH-HhCC
Confidence 4899999999999999999987 65 899999998876554421 111000 00 12232 45555 4999
Q ss_pred CCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+||++...|..+. .++. .+...+++..+.+.++.+.+ +|++- |.|..+.
T Consensus 74 adivIitag~~~k~g---~~R~dll~~N~~i~~~i~~~i~~~~~~~-~vivv-sNP~d~~ 128 (315)
T PRK00066 74 ADLVVITAGAPQKPG---ETRLDLVEKNLKIFKSIVGEVMASGFDG-IFLVA-SNPVDIL 128 (315)
T ss_pred CCEEEEecCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEc-cCcHHHH
Confidence 999999987765431 1111 12233455566666665544 44332 4565553
No 157
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.93 E-value=4.4e-05 Score=78.17 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=71.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+..- |.+|++||+.... .+ .... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 4899999999999999999887 9999999964211 00 0011 2468888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..+ + ......+. -++....+++++++|+.|=.+.=..+.+.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999884221 0 01111111 13455678999999997654443345566666653
No 158
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.92 E-value=0.00013 Score=73.41 Aligned_cols=103 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. ... ..++++.++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 4799999999999999988765 8999999874310 00 001 2367888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. +...+. -+.....++++.++|+.+=...=..+.+.+.|++.
T Consensus 201 v~l~~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTE-----------TTQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCCh-----------HHhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998421 112121 13345668999999986644333345566677653
No 159
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.91 E-value=8.5e-05 Score=64.15 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=47.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. +++++. ++|++++... | .++.++... ...++.+++|+++.+..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~----g------~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV----G------KDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT----T------SBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc----c------chhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999984 488855 5787752110 1 111111100 112456789999988899
Q ss_pred CEEEEEc
Q 011650 80 NIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|++|-+.
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
No 160
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=4.5e-05 Score=75.42 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=55.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD-ISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|+||| .|.||.|||.+|.++ |++|++|+ +++ +++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT~----------------------------------~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRTR----------------------------------DLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCCC----------------------------------CHHHHHhcC
Confidence 4799999 999999999999998 99999995 321 345668899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|++.|.. +.+ ..+++|++||+.++
T Consensus 203 DIVIsavg~~~~--------------v~~------~~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKG------DWIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cch------heecCCCEEEEcCC
Confidence 999999986521 122 12789999998654
No 161
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.87 E-value=0.00017 Score=72.53 Aligned_cols=102 Identities=8% Similarity=0.097 Sum_probs=69.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+... .. ... ..++++.++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 3799999999999999998765 899999998521 00 001 1367888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. ++..+. -++....++++.++|+.+=.+.=..+.+.+.|++.
T Consensus 201 v~l~lPlt~-----------~T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTE-----------HTRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCCh-----------HHhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998422 112121 13345678999999986643333345566677653
No 162
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.86 E-value=8.1e-05 Score=72.68 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|+|+ |.||..++..+.+. +++++.+ +|+++++.... . . ..+..++|+++.+++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~-~------~------------~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ-G------A------------LGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc-C------C------------CCccccCCHHHhccC
Confidence 689999998 99999999888764 4788665 88887654322 0 0 124456788887778
Q ss_pred CCEEEEEcc
Q 011650 79 ANIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998874
No 163
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.82 E-value=9.3e-05 Score=75.57 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE--ecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
||||.|||+|.+|.+.|..|+.+ | ++|++.||+.++++++.... ..+.- -.+.+ ...+.+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~~v~~------------~~vD~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGGKVEA------------LQVDAADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhcccccee------------EEecccChHHHHHHH
Confidence 79999999999999999999998 6 89999999999999886531 11100 00111 12345567
Q ss_pred hcCCEEEEEccCC
Q 011650 77 REANIVFVSVNTP 89 (480)
Q Consensus 77 ~~aDvVii~Vptp 89 (480)
++.|+||-|.|-+
T Consensus 67 ~~~d~VIn~~p~~ 79 (389)
T COG1748 67 KDFDLVINAAPPF 79 (389)
T ss_pred hcCCEEEEeCCch
Confidence 8899999999854
No 164
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.82 E-value=0.00011 Score=71.99 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=48.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeCC-HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDIS-VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~-~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|+| +|.||..++..+... +++++.+ +|+. ++...+ ...++.. .....+.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 68999999 699999999999875 5888765 6743 322100 0000000 00113567788887545
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
.+|+||.|+++
T Consensus 68 ~~DvVIdfT~p 78 (266)
T TIGR00036 68 DPDVLIDFTTP 78 (266)
T ss_pred CCCEEEECCCh
Confidence 68999999753
No 165
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.80 E-value=0.0025 Score=64.60 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=136.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEE---EecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.+|-|+|.|.++.-+|..|.+.+ ..+|=.+.|...+-+. ++++...+ +.+.+.-..+...|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~-~v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLF-EVSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEE-EEeecchhhhhhcCeEEhhHhhcCHH
Confidence 678999999999999999999872 3468788887655544 44421111 11111111112234443 345777
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCC-CcEEEEecCCCcccHHHHHHHHHhhcCCCceE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKS-DKIVVEKSTVPVKTAEAIEKILMHNSRGINFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-|.+|+|||+.. -.+++++|.. .++. .++|.+++|. |+...++..+.+.+. +..
T Consensus 79 ~i~g~WdtlILavtaDA---------------Y~~VL~ql~~~~L~~vk~iVLvSPtf--GS~~lv~~~l~~~~~--~~E 139 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADA---------------YLDVLQQLPWEVLKRVKSIVLVSPTF--GSHLLVKGFLNDLGP--DAE 139 (429)
T ss_pred HhcccccEEEEEechHH---------------HHHHHHhcCHHHHhhCCEEEEECccc--chHHHHHHHHHhcCC--Cce
Confidence 76678899999998631 2456666543 2222 4677776676 343445556665542 222
Q ss_pred Ee-e----CCcccccC----ccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH------
Q 011650 152 IL-S----NPEFLAEG----TAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK------ 216 (480)
Q Consensus 152 v~-~----~Pe~~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|+ + +-.+...+ +++.... -.++.+|+... +.....++..+++.++- ......++-.||.--
T Consensus 140 VISFStY~gdTr~~d~~~~~~vlt~~v-K~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVH 215 (429)
T PF10100_consen 140 VISFSTYYGDTRWSDGEQPNRVLTTAV-KKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVH 215 (429)
T ss_pred EEEeecccccceeccCCCcceehhhhh-hceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecC
Confidence 11 1 22222111 1111111 23678887643 45678899999998753 233445677777411
Q ss_pred --HHHH----------------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 217 --LAAN----------------------------AFLAQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 217 --l~~N----------------------------~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+..| ....-+.....|++.+..++|++.-.+++.++-+
T Consensus 216 pplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 216 PPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred ChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 1111 3334567788999999999999999999999976
No 166
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.79 E-value=0.00014 Score=73.08 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=53.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|...+ +++|+++|+++++.+.+.+... ......++..+++..+|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG----------------GNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC----------------CeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998751 4789999999998877664210 111112345666789999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
No 167
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.77 E-value=0.00017 Score=72.08 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=68.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe---cCHHHHhh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS---TDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (480)
|||+|||+ |.+|.++|..|+.+.-..++.++|++ +. +|.. + ++........++.+ +|+.+.++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a----~g~a------l-DL~~~~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NT----PGVA------A-DLSHINTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--cc----ceee------h-HhHhCCCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999877212589999998 21 1210 0 11000011235532 23445599
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+||+||++...|..+. .+ +. +.+.+++..+.|.++.+ +.+|++ -|.|..+.
T Consensus 68 daDivvitaG~~~k~g---~t-R~dll~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvDv~ 123 (310)
T cd01337 68 GADVVVIPAGVPRKPG---MT-RDDLFNINAGIVRDLATAVAKACP-KALILI-ISNPVNST 123 (310)
T ss_pred CCCEEEEeCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchhhH
Confidence 9999999998775431 11 22 23445566666666644 444443 46777663
No 168
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=0.00014 Score=71.43 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=46.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+. ++.++.++ +++. ..+...+. + .....+++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~~-~~~~~~~~------------~----~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPEH-SIDAVRRA------------L----GEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcCC-CHHHHhhh------------h----ccCCeeeCCHHHhccCC
Confidence 79999999999999999998874 46666543 3322 11111110 0 01245678887753468
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|.|+
T Consensus 63 DvVve~t~~ 71 (265)
T PRK13303 63 DLVVECAGH 71 (265)
T ss_pred CEEEECCCH
Confidence 999999875
No 169
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=8e-05 Score=73.02 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=56.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||. |.||.|||..|.++ |+.|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999998 9999998310 235677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +.. ..+++|++||+.|+.
T Consensus 204 IVI~avg~~~~--------------v~~------~~ik~GavVIDvgin 232 (284)
T PRK14179 204 ILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGMN 232 (284)
T ss_pred EEEEecCcccc--------------CCH------HHccCCcEEEEecce
Confidence 99999987632 111 237899999986643
No 170
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.75 E-value=0.00026 Score=71.28 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=70.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+ |.+|.++|..|+.. |. ++.++|++++. .+.... ++..... ....+.+++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~--------Dl~~~~~-~~~~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAM--------ELEDCAF-PLLAEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeeh--------hhhhccc-cccCceEEecC
Confidence 59999999 99999999999876 44 79999996432 221111 0100000 00012344444
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
..+.+++||+||++-..|.... .+ +.| .+.+++..+.|.++.+++.+++.- |.|....-
T Consensus 72 ~~~~~~daDivvitaG~~~k~g---~t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t 135 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPG---ME-RADLLKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTNA 135 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCC---Cc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHHH
Confidence 4455999999999987765431 11 122 344566677777777545555443 46665543
No 171
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.74 E-value=0.00021 Score=70.26 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=68.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+.... .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~~--------------~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQR--------------YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhh--------------cCceEEechhhhcccCccE
Confidence 4699999999999999999988 89999999999888776642100 0112222211122457999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||-|+|..... ..+-..+ -...++++.+|++.++.|+.|
T Consensus 182 vInatp~gm~~-------~~~~~~~------~~~~l~~~~~v~D~~y~p~~T 220 (270)
T TIGR00507 182 IINATSAGMSG-------NIDEPPV------PAEKLKEGMVVYDMVYNPGET 220 (270)
T ss_pred EEECCCCCCCC-------CCCCCCC------CHHHcCCCCEEEEeccCCCCC
Confidence 99998864221 0100000 013467888999999998877
No 172
>PRK05442 malate dehydrogenase; Provisional
Probab=97.74 E-value=0.00026 Score=71.40 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=70.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-----EVAVVDISVP--RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+||+|||+ |.+|.++|..|+...--- ++.++|++++ +++.... ++....... ..+.+++++..
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~-~~~~~i~~~~y 75 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPL-LAGVVITDDPN 75 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhh-cCCcEEecChH
Confidence 68999998 999999999888651112 7999999643 2221110 111111000 11234455544
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|... +.+ +. +.+.+++..+.|.++.+++.+++.- |.|....-.
T Consensus 76 ~~~~daDiVVitaG~~~k~---g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 138 (326)
T PRK05442 76 VAFKDADVALLVGARPRGP---GME-RKDLLEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTNAL 138 (326)
T ss_pred HHhCCCCEEEEeCCCCCCC---CCc-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHHHH
Confidence 5699999999998765433 111 22 2244566667777777556666553 467665443
No 173
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.73 E-value=0.00027 Score=65.94 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=50.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|++||||.+|..+...+.+.-.++ -|.+||++.+++..+.+.. +.+.++++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999999988776420124 4788999999988776531 1123478888789999
Q ss_pred EEEEEc
Q 011650 81 IVFVSV 86 (480)
Q Consensus 81 vVii~V 86 (480)
+++.|-
T Consensus 63 lvVEaA 68 (255)
T COG1712 63 LVVEAA 68 (255)
T ss_pred eeeeeC
Confidence 999995
No 174
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.70 E-value=0.00055 Score=61.38 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=57.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|.|.+|..+|..|... |.+|+++|+||-+.-+... .+++.. +.++++..+|+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~-------------------dGf~v~-~~~~a~~~adi 81 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAM-------------------DGFEVM-TLEEALRDADI 81 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHH-------------------TT-EEE--HHHHTTT-SE
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhh-------------------cCcEec-CHHHHHhhCCE
Confidence 4789999999999999999998 9999999999965432221 234443 57888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
+|.++....- . -.+..+.++++.++.+.+..+..
T Consensus 82 ~vtaTG~~~v---------i--------~~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 82 FVTATGNKDV---------I--------TGEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp EEE-SSSSSS---------B---------HHHHHHS-TTEEEEESSSSTTS
T ss_pred EEECCCCccc---------c--------CHHHHHHhcCCeEEeccCcCcee
Confidence 9988764210 1 12334558889988775555433
No 175
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.69 E-value=0.0002 Score=65.87 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=75.7
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
...+.+++|+|+|+ .+-+..+++.|..-|++|.+|||...+......+
T Consensus 31 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~---------------------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGY----------GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF---------------------- 78 (178)
T ss_dssp BS-STTSEEEEEST----------SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------------
T ss_pred ccccCCCEEEEEEE----------cCCcCeEeeeeecCCceeEEecccCChhhhcccc----------------------
Confidence 45789999999997 3579999999999999999999998876522221
Q ss_pred ceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ ...++++.++.+|+|+++.+- ++-+++--.+..+.|++..++|.+-+ ++|.+.+.
T Consensus 79 ~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~ 138 (178)
T PF02826_consen 79 GV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALL 138 (178)
T ss_dssp TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHH
T ss_pred cc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHH
Confidence 23 345899999999999999884 44555433455678888889999865 77876544
No 176
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.68 E-value=0.00033 Score=72.39 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=64.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+....... +..+ .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~-------------------G~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD-------------------GFRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc-------------------CCEe-CCHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765433321 1222 245667889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~ 130 (480)
+|.+++++ .++ ......++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99887642 122 23556788999998866443
No 177
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.65 E-value=0.0012 Score=66.61 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHHHHH----cCCCCCCCCChHHHHHHhcCCCEE
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--PRINAWN----SDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~~l~----~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
.||+|||+ |.+|.++|..|... +. ++.++|+++ ++.+... ....+. ..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~-------------~~~~~ 68 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL-------------LAGVV 68 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHHHhhccccc-------------cCCcE
Confidence 58999998 99999999999876 53 899999964 2222211 111010 01233
Q ss_pred EecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 68 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++..+.+++||+||++-..|... +.+ +.| .+.+++..+.|.++.+++.+++.- |.|....-.
T Consensus 69 i~~~~~~~~~daDvVVitAG~~~k~---g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 137 (323)
T TIGR01759 69 ATTDPEEAFKDVDAALLVGAFPRKP---GME-RADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNAL 137 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCC---CCc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 4344345599999999998876433 111 222 345667777788877755555543 477665433
No 178
>PRK04148 hypothetical protein; Provisional
Probab=97.65 E-value=0.0004 Score=60.41 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=63.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.+||+| -|..+|..|++. |++|+++|++++.++..++....... +.+ +..+++ .-+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 899899999998 99999999999999887764322110 111 233433 3689999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV 124 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi 124 (480)
|.-+=|.|. +...+..++..+..+-+|.
T Consensus 81 iysirpp~e---------------l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPRD---------------LQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCHH---------------HHHHHHHHHHHcCCCEEEE
Confidence 999987541 3445566666666544443
No 179
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.64 E-value=0.00014 Score=65.98 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=74.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+++|+. .....+++.|.++|++|.+||+.-...+... ..+.+.++
T Consensus 2 ~~Ig~IGlG----------~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~----------------------~~g~~~~~ 49 (163)
T PF03446_consen 2 MKIGFIGLG----------NMGSAMARNLAKAGYEVTVYDRSPEKAEALA----------------------EAGAEVAD 49 (163)
T ss_dssp BEEEEE--S----------HHHHHHHHHHHHTTTEEEEEESSHHHHHHHH----------------------HTTEEEES
T ss_pred CEEEEEchH----------HHHHHHHHHHHhcCCeEEeeccchhhhhhhH----------------------Hhhhhhhh
Confidence 489999973 5899999999999999999997543322111 13478899
Q ss_pred ChhhhcccCcEEEEeecCcc-cccccHHH--HHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLDYQK--IYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~~~~--~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
|+.++++++|+|++++.+++ .++. +.. +...+.+..+|+|+..+-+. +.+.+.|+.|..-.
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhHhhcccceEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 99999999999999998843 3331 112 66667677799999998864 34456788886543
No 180
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.64 E-value=0.00027 Score=70.73 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..++...+-.+|.+|++++++.+++.+... . ....+. .++.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999753223579999999999888765210 0 001122 4778888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+.|+|++. | + +. ..+++|+.|...++..|+..+
T Consensus 192 VitaT~s~~----------P----l---~~---~~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 192 VVTATTSRT----------P----V---YP---EAARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred EEEccCCCC----------c----e---eC---ccCCCCCEEEecCCCCCCccc
Confidence 999987642 1 1 11 135789988766666565543
No 181
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.63 E-value=0.00026 Score=74.08 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=63.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||.|.+|..+|..+... |.+|+++|+++.+....... +.. ..+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~-~~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQ-VVTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Cce-eccHHHHHhcCCE
Confidence 4799999999999999999887 89999999988765332211 122 2356778899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|++|+.++- -. -......++++.++++.+-.
T Consensus 313 VI~atGt~~---------iI--------~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKD---------II--------TLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCccc---------cc--------CHHHHhccCCCcEEEEcCCC
Confidence 999975431 01 12445668899999885533
No 182
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.62 E-value=0.00039 Score=70.32 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=68.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+... .+ ....+...+++++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQ-----------SK-FNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------Hh-cCCcEEEeCCHHHHHhcCCE
Confidence 4799999999999888777643223589999999999887764210 00 01124556888888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+|++ + | .+. ..+++|+.|+...+..|+..
T Consensus 196 Vi~aT~s~-~---------p-------~i~---~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 196 IVTVTNAK-T---------P-------VFS---EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred EEEccCCC-C---------c-------chH---HhcCCCcEEEecCCCCcccc
Confidence 99998764 1 1 111 35688998865544444443
No 183
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.61 E-value=0.00046 Score=71.73 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=64.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... +..+ .+++++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999987 89999999998775433321 1222 356777889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv 129 (480)
||.|+.++ .++ ......++++.++++.+..
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 99987542 122 2456678899988876544
No 184
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00055 Score=65.42 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=38.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|.|||+|.+|.++|..|.+. ||+|+++|.+++++++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 7999999999999999999998 9999999999999988443
No 185
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.58 E-value=0.00059 Score=69.11 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=51.4
Q ss_pred CceEEEECCChhH-HHHHHHHHHcCCC-Ce-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVG-GPTMAVIALKCPS-IE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~La~~~~G-~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++||||||+|.++ ...+..+... ++ .+ |-++|+++++.+++.+.. +--...+|+++.++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~-~~~~~~vav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 64 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL-GGGLELVAVVDRDPERAEAFAEEF-----------------GIAKAYTDLEELLA 64 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC-CCceEEEEEecCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 4799999999554 5577777775 12 23 556799999988776521 11146778888776
Q ss_pred c--CCEEEEEccCCCC
Q 011650 78 E--ANIVFVSVNTPTK 91 (480)
Q Consensus 78 ~--aDvVii~Vptp~~ 91 (480)
+ .|+|+||+|+..+
T Consensus 65 ~~~iD~V~Iatp~~~H 80 (342)
T COG0673 65 DPDIDAVYIATPNALH 80 (342)
T ss_pred CCCCCEEEEcCCChhh
Confidence 4 6999999987543
No 186
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.58 E-value=0.00047 Score=70.90 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=68.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|||+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.+.++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999987 889999999999887765421 00000 00001234556789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|++.|... .+-+ +.+.....++++.+|++-+.-+.|..
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 99998543211 1211 12333355788898888775554543
No 187
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.57 E-value=0.00059 Score=70.73 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=64.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+....- | ... .+.++++..+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~------------------G-~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME------------------G-YEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc------------------C-CEE-ccHHHHHcCCCE
Confidence 3799999999999999998887 88999999999887665531 1 222 234566789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||.|++++. ..-+.....++++.++++.+.
T Consensus 261 VI~atG~~~-----------------~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNKD-----------------IITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCHH-----------------HHHHHHHhcCCCCcEEEEeCC
Confidence 999976431 112334667888888877653
No 188
>PRK11579 putative oxidoreductase; Provisional
Probab=97.56 E-value=0.0013 Score=67.00 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=48.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|.. .+..+... ++.+++ ++|+++++..+ .. +...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~~-----------------~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---DW-----------------PTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---hC-----------------CCCceeCCHHHHhcCC
Confidence 58999999999974 55656553 578876 58998876531 10 12345678888775
Q ss_pred cCCEEEEEccCCC
Q 011650 78 EANIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 64 ~vD~V~I~tp~~~ 76 (346)
T PRK11579 64 NIDLIVIPTPNDT 76 (346)
T ss_pred CCCEEEEcCCcHH
Confidence 5799999988753
No 189
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0003 Score=70.75 Aligned_cols=104 Identities=19% Similarity=0.283 Sum_probs=79.5
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-.-.+++.|..-|.+|.+|||+.+.+... ...
T Consensus 138 ~el~gkTvGIiG~G----------~IG~~va~~l~afgm~v~~~d~~~~~~~~~-----------------------~~~ 184 (324)
T COG0111 138 TELAGKTVGIIGLG----------RIGRAVAKRLKAFGMKVIGYDPYSPRERAG-----------------------VDG 184 (324)
T ss_pred ccccCCEEEEECCC----------HHHHHHHHHHHhCCCeEEEECCCCchhhhc-----------------------ccc
Confidence 35689999999983 478899999999999999999988765211 123
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....++++.++.||.|+++++- ++-+++--.+....|++..++|.+-+ +.|.+.+-
T Consensus 185 ~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~ 244 (324)
T COG0111 185 VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALL 244 (324)
T ss_pred ceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHH
Confidence 44457899999999999999987 66666433444578988888888855 67765444
No 190
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.53 E-value=0.00036 Score=61.14 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=54.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCC--EEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKN--LFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~--l~~t~d~~~a~~~ 78 (480)
.++.|||+|-+|..++..|+.. |.+ |++++|+.++.+++.+.. .... ....++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---------------~~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---------------GGVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---------------TGCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---------------CccccceeeHHHHHHHHhh
Confidence 4799999999999999999998 765 999999999998887521 0011 2334566666889
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||.|+|.+
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998865
No 191
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.52 E-value=0.0006 Score=69.34 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=56.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|+|+|.||..++..+..+ +++++.+ .|.+++..+.+.+. ..+.+.+ ..+.........+.+..++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 78999999999999999988865 6788776 57676666554431 1222111 0000000011346777788887789
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999864
No 192
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.52 E-value=0.0012 Score=65.92 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=71.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++.-.+=.+|.+|++++++.+++.+.. ++.....+...+++++++.+||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~------------~~~~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF------------SKEFGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 469999999999999988887544468999999999988876421 00001246778899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. |=+ . ...+++|+.|....+..|+.
T Consensus 186 V~taT~s~~----------P~~----~-----~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 186 ITSITNSDT----------PIF----N-----RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred EEEecCCCC----------cEe----c-----HHHcCCCceEEecCCCCCCc
Confidence 999987531 111 1 13567888776544444444
No 193
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.52 E-value=0.00034 Score=60.04 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=57.7
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhcC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVREA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
||+|+| .|.+|..++..|... +++++..+ +++.++-+.+......+.. .. ...++ .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHLKG-----EV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccccc-----cc------ccccccCChh--hcCC
Confidence 689999 599999999888874 47888876 6554332222211100000 00 00111 2222 2589
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|+||+|+|... ..+.+..+.+.+.+|++||++|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999998532 233333445567889999988754
No 194
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.51 E-value=0.00017 Score=74.37 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=64.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE------EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA------VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~------~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
++|+|||+|.+|...|.+|... |++|+ ++|.+....+.+.+. ++.+ .+++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999999887 89988 445444333333221 2333 467888
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++.||+|++.+|... -..+.+.+.++++++.++..+-
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecC
Confidence 999999999987421 1345588999999999887643
No 195
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.50 E-value=0.0011 Score=66.28 Aligned_cols=66 Identities=15% Similarity=0.390 Sum_probs=47.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|+||..++..+... ++.++++ +|+++ +++. .+ . ....+.|..+.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6899999999999999888765 6889886 69985 4322 11 1 112234555667789
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 62 DVViIctPs~ 71 (324)
T TIGR01921 62 DVLILCMGSA 71 (324)
T ss_pred CEEEEcCCCc
Confidence 9999998864
No 196
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.50 E-value=0.00067 Score=77.51 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCe-------------EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-------------VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-------------V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|+||+|||+|.||.+.|..|++. ++.+ |++.|+++++.+++.++.. +. ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~---------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NA---------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CC---------ceEE
Confidence 46899999999999999999975 4555 9999999999888776421 00 0122
Q ss_pred E-ecCHHHH---hhcCCEEEEEccCCC
Q 011650 68 F-STDVEKH---VREANIVFVSVNTPT 90 (480)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~Vptp~ 90 (480)
. .+|.++. ++++|+|++|+|+..
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchh
Confidence 2 3455443 357999999999754
No 197
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.49 E-value=0.00016 Score=62.08 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=55.5
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhhcC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVREA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~a 79 (480)
||+||| .|++|..+...|+++ |.+++.. +.++++.-..+....... .+ ...+.+.+ +.++ +.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~---------~~~~~~~~~~~~~-~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KG---------FEDLSVEDADPEE-LSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TT---------TEEEBEEETSGHH-HTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--cc---------ccceeEeecchhH-hhcC
Confidence 799999 999999999999985 6777554 555441222222211000 00 01233444 5444 7999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|+|+. ...+.... .++.+..||+.|+
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAPK---LLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHHH---HHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHHH---HhhCCcEEEeCCH
Confidence 9999998741 11222222 3457888888764
No 198
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.49 E-value=0.00068 Score=68.15 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=65.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH---HHHh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV---EKHV 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~a~ 76 (480)
|+||+|||+ |.+|..+|..|+......++.++|++...-+.+ . +. .....-.+..++|. .+++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~-----D-----l~---~~~~~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA-----D-----LS---HIDTPAKVTGYADGELWEKAL 74 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc-----c-----hh---hcCcCceEEEecCCCchHHHh
Confidence 679999999 999999999998552246899999932111100 0 00 00001124433331 4569
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++...|.... .+ ..| .+.+++..+.+.++ .+..+| ..+|.|....-.
T Consensus 75 ~gaDvVVitaG~~~~~~---~t-R~dll~~N~~i~~~i~~~i~~~-~~~~iv-iv~SNPvdv~~~ 133 (321)
T PTZ00325 75 RGADLVLICAGVPRKPG---MT-RDDLFNTNAPIVRDLVAAVASS-APKAIV-GIVSNPVNSTVP 133 (321)
T ss_pred CCCCEEEECCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHH-CCCeEE-EEecCcHHHHHH
Confidence 99999999998765431 01 111 11233334444444 234444 447777766443
No 199
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.48 E-value=0.0013 Score=68.64 Aligned_cols=121 Identities=14% Similarity=0.195 Sum_probs=73.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALK-------CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-------~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
-||+|||+ |.+|..+|..|+.. .--.++.++|+++++.+...-. +........ .+++++++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~~-~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPLL-REVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 38999999 99999999999864 1123799999999887654421 111110011 2355444444
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|... + .+ +.| .+.+++..+.|.++..++.+|++- |.|..+.-.
T Consensus 172 e~~kdaDiVVitAG~prkp-G--~t-R~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~ 234 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGP-G--ME-RADLLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL 234 (444)
T ss_pred HHhCcCCEEEECCCCCCCC-C--CC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence 5599999999998776543 1 11 222 334555666666644445555443 467665443
No 200
>PLN02494 adenosylhomocysteinase
Probab=97.48 E-value=0.00065 Score=70.96 Aligned_cols=87 Identities=18% Similarity=0.102 Sum_probs=63.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH-HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA-WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+... ...| +.+ .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999876 8999999999876433 2222 222 24667788999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.|.++.. -+.......++++.++++.+-
T Consensus 312 VVI~tTGt~~-----------------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGNKD-----------------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCCcc-----------------chHHHHHhcCCCCCEEEEcCC
Confidence 9998765431 012445567899999988664
No 201
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.48 E-value=0.0021 Score=66.07 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=71.2
Q ss_pred eEEEECC-ChhHHHHHHHHHHcC-CCC----eEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKC-PSI----EVAVV--DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~-~G~----~V~~~--D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..++... .+. .+.++ |+++++.+..... +........ .+++++++..+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y~ 116 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPYE 116 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCHH
Confidence 8999999 999999999998762 111 23344 8888776654421 111110011 23554444445
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
.+++||+||++-..|..+. .+ +. +.+.+++..+.|.++.+++.+|+.- |.|..+.-
T Consensus 117 ~~kdaDIVVitAG~prkpg---~t-R~dll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t 177 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPG---ME-RADLLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNA 177 (387)
T ss_pred HhCCCCEEEECCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHH
Confidence 5999999999987765431 11 22 2344566666777766566655543 46766543
No 202
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.46 E-value=0.00086 Score=67.37 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=72.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+.. ++ ..-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~------------~~-~~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA------------QA-LGFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-cCCcEEEECCHHHHhcCCCE
Confidence 469999999999999998887655578999999999988776421 00 01235668899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. .+.+++|+.|...++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999986531 1 111 13577899887655555554
No 203
>PRK05086 malate dehydrogenase; Provisional
Probab=97.46 E-value=0.0013 Score=65.95 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=67.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE--ecCHHHHh
Q 011650 2 VKICCIGA-GYVGGPTMAVIAL-KCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
|||+|||+ |.+|..+|..+.. ...+++++++|+++.. .+. ..+.... ..-.++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~--------~~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIP--------TAVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCC--------CCceEEEeCCCCHHHHc
Confidence 89999999 9999999988854 2225799999997542 111 0110000 0012222 35655668
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+++|+||+|...+.... .+ +.| .+.+++..+.+.++. ++.+|+ .+|.|..+.-.
T Consensus 68 ~~~DiVIitaG~~~~~~---~~-R~dll~~N~~i~~~ii~~i~~~~-~~~ivi-vvsNP~D~~t~ 126 (312)
T PRK05086 68 EGADVVLISAGVARKPG---MD-RSDLFNVNAGIVKNLVEKVAKTC-PKACIG-IITNPVNTTVA 126 (312)
T ss_pred CCCCEEEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccCchHHHHH
Confidence 99999999998765331 00 112 113344445555553 344444 46788766443
No 204
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.46 E-value=0.0027 Score=63.58 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=76.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|+|.+|..+|.+|..- | .++.| .+++.+-+...+- . .. ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~------------------~-~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY------------------Y-AE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh------------------c-cc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 55555 4444333322210 0 01 246677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|++|.|-. .++..+ +=+.+..+++++.++|+.+-......+.+.+.|++... |.|+ +.||
T Consensus 220 ~ivv~~pLt-----------~~T~~l--iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDV---f~~E 283 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KETRHL--INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDV---FEPE 283 (336)
T ss_pred EEEEecCCC-----------HHHHHH--hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccc---cCCC
Confidence 999998742 222222 33567888999999998665555555667777766422 5553 4555
Q ss_pred c
Q 011650 158 F 158 (480)
Q Consensus 158 ~ 158 (480)
-
T Consensus 284 P 284 (336)
T KOG0069|consen 284 P 284 (336)
T ss_pred C
Confidence 3
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.45 E-value=0.0014 Score=65.97 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=63.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++...+-.+|.+|++++++.+++.+.... ..-.+..++|+++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------------LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------------CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------------ccccceeccchhhhcccCCE
Confidence 36999999999999999988765556899999999998887652111 01357788999999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+|+... .|=+ -...+++|+.|...+...|+.
T Consensus 196 i~taT~s~~~--------~P~~---------~~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTP--------APVF---------DAEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSE--------EESB----------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCC--------Cccc---------cHHHcCCCcEEEEecCCCCch
Confidence 9999875420 0111 024678898887655555544
No 206
>PRK06046 alanine dehydrogenase; Validated
Probab=97.42 E-value=0.0016 Score=65.95 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=68.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..|+...+-.+|.+||+++++.+++.+... +...-.+...++++++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS------------SVVGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH------------hhcCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999998854223478899999998887764210 000112556778888776 999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. |=+ . .+.+++|+.|...++..|+.
T Consensus 197 Vv~aTps~~----------P~~----~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 197 LVTTTPSRK----------PVV----K-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred EEEecCCCC----------cEe----c-----HHHcCCCCEEEecCCCCCcc
Confidence 999988531 111 1 13567898886555555554
No 207
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.41 E-value=0.00095 Score=69.81 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... | .+|++++++.++.+.+.+... .......+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~g----------------~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKELG----------------GEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHcC----------------CeEeeHHHHHHHHhhCC
Confidence 4799999999999999999987 7 789999999988776654110 01111235556688999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 243 vVi~aT~s~ 251 (417)
T TIGR01035 243 IVISSTGAP 251 (417)
T ss_pred EEEECCCCC
Confidence 999998765
No 208
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.40 E-value=0.001 Score=66.60 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=67.7
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-e-c-CHHHHhhc
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-S-T-DVEKHVRE 78 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t-~-d~~~a~~~ 78 (480)
||+|||+ |.+|.++|..|+.+.-..++.++|+++ . .|.. .++.. ....-+++. + + ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a----~g~a----~DL~~---~~~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--A----AGVA----ADLSH---IPTAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--C----cEEE----chhhc---CCcCceEEEecCCCchHHHcCC
Confidence 7999999 999999999998872234899999986 1 1210 00100 000123443 2 2 33456999
Q ss_pred CCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||++...|.... .++ ..+.+.+++..+.|.++. ++.+|++ -|.|..+
T Consensus 68 aDivvitaG~~~~~g---~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKPG---MTRDDLFNVNAGIVKDLVAAVAESC-PKAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCCC---ccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEE-ecCchhh
Confidence 999999998765431 111 112344566666677764 4444433 4677765
No 209
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0018 Score=65.14 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=85.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
.++|||+|..+......+..-.+.-+|.+|+++++..+++.+.- .+. ....+..+++.++++++||+|
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l-----------~~~-~~~~v~a~~s~~~av~~aDiI 199 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL-----------RKR-GGEAVGAADSAEEAVEGADIV 199 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH-----------Hhh-cCccceeccCHHHHhhcCCEE
Confidence 58999999999999999988766678999999999998877421 000 001256788999999999999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+.|+|+.. |-+ -...+++|+.|...++-.|+-.+.-.+.+... +-.++..++..
T Consensus 200 vt~T~s~~----------Pil---------~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 200 VTATPSTE----------PVL---------KAEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEecCCCC----------Cee---------cHhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 99987632 222 12567899998776666666654333444443 12456666654
No 210
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.39 E-value=0.0008 Score=67.84 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=69.4
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|+++ ++.+.... ++...... .....+++++..+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~-~~~~~~i~~~~~~ 72 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFP-LLKGVVITTDPEE 72 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhccc-ccCCcEEecChHH
Confidence 8999999 9999999999987511 12599999987 43222111 11111000 0112344445556
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
++++||+||++-..|.... .++. .+.+.+++..+.|.++..++.+++.- |.|....
T Consensus 73 ~~~~aDiVVitAG~~~~~g---~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 73 AFKDVDVAILVGAFPRKPG---MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HhCCCCEEEEeCCCCCCcC---CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 7999999999987765431 1110 12334566667777775445555443 4666553
No 211
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.38 E-value=0.00064 Score=63.73 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
.||+|+|+|.+|..+|..|++. |+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999998 88 79999998
No 212
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.37 E-value=0.0015 Score=66.01 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=70.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKC-----PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-----~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||+|+|+ |.+|..++..|+... .+.+|.++|+++.. +.+ .+.. .++..... ...++++.+.++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~~----~Dl~d~~~-~~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGVV----MELQDCAF-PLLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-ccee----eehhhccc-cccCCceecCCHHHH
Confidence 48999999 999999999998741 13589999997531 111 1110 01111000 001245556776667
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||++-.-|.... .++ ..+.+.+++..+.|.++.+++.++++-| .|...
T Consensus 76 l~~aDiVI~tAG~~~~~~---~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~ 133 (325)
T cd01336 76 FKDVDVAILVGAMPRKEG---MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANT 133 (325)
T ss_pred hCCCCEEEEeCCcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHH
Confidence 999999999987654321 111 1123344566677777765566555433 56544
No 213
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.36 E-value=0.0012 Score=68.29 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=39.0
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVPRINAWNSDQL 47 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~ 47 (480)
|||.++|+|.+|.. ++..|.+. |++|+++|++++.++++++.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCC
Confidence 79999999999984 47788877 8999999999999999998654
No 214
>PRK07574 formate dehydrogenase; Provisional
Probab=97.35 E-value=0.00094 Score=68.77 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|++|.+|||.....+....+ ++
T Consensus 189 ~L~gktVGIvG~G----------~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~----------------------g~ 236 (385)
T PRK07574 189 DLEGMTVGIVGAG----------RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL----------------------GL 236 (385)
T ss_pred ecCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc----------------------Cc
Confidence 4789999999973 578899999999999999999986433332221 24
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
++..++++.++.+|+|+++.+- ++-+++=-++..+.|++.+++|++-+ ++|.+.+.
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 295 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVV 295 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHH
Confidence 5567899999999999999885 44444322466778988889999855 66765443
No 215
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.34 E-value=0.0011 Score=67.24 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=56.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|...+..++...+..+|.+|++++++.+++.+.... . ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-----------~-~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-----------E-LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-----------c-cCceEEEeCCHHHHHccCCE
Confidence 57999999999999888887532246899999999999887652100 0 00124557888888999999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|+|+.
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99998753
No 216
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.33 E-value=0.0022 Score=62.11 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=48.1
Q ss_pred ceEEEECCChhHHHHHHHHHHc-CCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALK-CPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
+||+|||+|+||..++..+.+. ..++++ .++++++++.+.+... ..+.+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 6899999999999999998763 123554 4578888777666532 3356677774 478
Q ss_pred CCEEEEEcc
Q 011650 79 ANIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.|-+
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999953
No 217
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.0017 Score=65.95 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=71.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+..-.+-.+|++|++++++.+++.+... +. .-.+..++++++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GP----------GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hc----------CCcEEEeCCHHHHHhcCCE
Confidence 3699999999999988777765445689999999999888765210 00 1236678899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+++... .| + ++ .+.+++|+.|....+..|+..
T Consensus 197 IvtaT~S~~~--------~P----v---l~--~~~lkpG~hV~aIGs~~p~~~ 232 (346)
T PRK07589 197 ITTVTADKTN--------AT----I---LT--DDMVEPGMHINAVGGDCPGKT 232 (346)
T ss_pred EEEecCCCCC--------Cc----e---ec--HHHcCCCcEEEecCCCCCCcc
Confidence 9999864310 01 1 11 145788988765555555543
No 218
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.30 E-value=0.0015 Score=70.42 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||+.+.+.. ..+ ++
T Consensus 135 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g~ 181 (525)
T TIGR01327 135 ELYGKTLGVIGLG----------RIGSIVAKRAKAFGMKVLAYDPYISPERA-EQL----------------------GV 181 (525)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------CC
Confidence 5689999999973 47889999999999999999998654332 211 23
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+.+++++.++.+|+|+++.+.. +.+++=-.+..+.|++.+++|++-+ ++|.+.+.
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~ 240 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALY 240 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHH
Confidence 45568999999999999999874 5555322455678988889999865 77765543
No 219
>PRK10206 putative oxidoreductase; Provisional
Probab=97.29 E-value=0.0017 Score=66.17 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=46.5
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.++.. .+..+....++.+|. ++|+++++. +..+. -+...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~-----------------~~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPI-----------------YSHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHh-----------------cCCCcccCCHHHHhcC
Confidence 679999999997652 334343322357776 589987654 22221 022345678888775
Q ss_pred -cCCEEEEEccCCC
Q 011650 78 -EANIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 63 ~~iD~V~I~tp~~~ 76 (344)
T PRK10206 63 PDVKLVVVCTHADS 76 (344)
T ss_pred CCCCEEEEeCCchH
Confidence 6799999998653
No 220
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.28 E-value=0.0007 Score=71.47 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=52.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~a 79 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...++.. +..+-...++++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999998 9999999999999998865 2111110 111111122333 5789
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+|+|++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999864
No 221
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.27 E-value=0.001 Score=67.74 Aligned_cols=33 Identities=33% Similarity=0.718 Sum_probs=27.1
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||||+|||+ |++|..++..|.++ ++++++.+-.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEC
Confidence 679999996 99999999999875 6788766433
No 222
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.27 E-value=0.00065 Score=62.16 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=63.0
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
|.|+|. |.+|..++..|.++ |++|+++-|++++.+. ..+ ..+.. +.+.-.+++.++++++|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789996 99999999999998 8999999999998877 221 11100 0010012345668899999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|.|++.+.. |....+..++.+... ....+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999975421 334444444444432 34455655543
No 223
>PLN03139 formate dehydrogenase; Provisional
Probab=97.22 E-value=0.0018 Score=66.74 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||.....+.... .++
T Consensus 196 ~L~gktVGIVG~G----------~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~----------------------~g~ 243 (386)
T PLN03139 196 DLEGKTVGTVGAG----------RIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE----------------------TGA 243 (386)
T ss_pred CCCCCEEEEEeec----------HHHHHHHHHHHHCCCEEEEECCCCcchhhHhh----------------------cCc
Confidence 5789999999963 47889999999999999999997533322221 124
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..++++.++.+|+|+++.+. ++.+++=-.++.+.|++..++|++-+ ++|.+.+.
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 302 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVA 302 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHH
Confidence 4556899999999999999885 55555322457788998889999854 77766554
No 224
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.22 E-value=0.0027 Score=63.39 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhcCCEEEE
Q 011650 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVREANIVFV 84 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (480)
|||+|.+|.++|..|+.+.-.-++.++|+++++.+..... +..... ....+.+++ .+++ .+++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD--------LQHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 6999999999999998773234799999988765543321 000000 001123333 4554 5999999999
Q ss_pred EccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 85 SVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 85 ~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+...|..+ +.+ +. +...+++..+.|.++.+ +.+|++ -|.|..+.
T Consensus 71 tag~~rk~---g~~-R~dll~~N~~i~~~~~~~i~~~~p-~~~viv-vsNP~d~~ 119 (299)
T TIGR01771 71 TAGAPQKP---GET-RLELVGRNVRIMKSIVPEVVKSGF-DGIFLV-ATNPVDIL 119 (299)
T ss_pred CCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-eCCHHHHH
Confidence 98876543 111 11 22345566666776644 444443 24666543
No 225
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.22 E-value=0.0012 Score=67.23 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=56.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhc
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|||+|+|+ |++|..++..|.++ |++++. +++.....-+.+.+-. +.+... ..+.+. .+.++.+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~~------~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRGL------VDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----cccccc------CCceeecCCHHHhhcC
Confidence 69999998 99999999999975 788888 4465542222222100 000000 011222 244554468
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+|+... .+....+ +..|..||+.|+
T Consensus 69 ~DvVf~alP~~~s---------------~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGVS---------------AELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchHH---------------HHHHHHH---HhCCCEEEeCCh
Confidence 9999999986321 2222222 245788888775
No 226
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.21 E-value=0.0048 Score=64.42 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=53.7
Q ss_pred ceEEEECCChhHHH-HHHHHHHc---CCCCeEEEEeCC-HHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGP-TMAVIALK---CPSIEVAVVDIS-VPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~---~~G~~V~~~D~~-~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||.|..-.+ +...|++. .++-+|+++|+| +++.+.+.+- ...++++. ..-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 79999999987443 33444442 245789999999 7887653320 11112211 12357889999999
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+.+||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999998643
No 227
>PLN00106 malate dehydrogenase
Probab=97.20 E-value=0.0026 Score=64.10 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=66.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE---EecCHHHHhh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF---FSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~---~t~d~~~a~~ 77 (480)
.||+|||+ |.+|..+|..|+.+....++.++|+++. .+.. -++......-.+. -++|+.++++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~------~g~a-------~Dl~~~~~~~~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT------PGVA-------ADVSHINTPAQVRGFLGDDQLGDALK 85 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC------CeeE-------chhhhCCcCceEEEEeCCCCHHHHcC
Confidence 48999999 9999999999997622358999999871 1100 0000000001232 2344566799
Q ss_pred cCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+||++...|..+. .++ ..+...+++..+.+.++. ++.+|+ .+|.|..+
T Consensus 86 ~aDiVVitAG~~~~~g---~~R~dll~~N~~i~~~i~~~i~~~~-p~aivi-vvSNPvD~ 140 (323)
T PLN00106 86 GADLVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEAVAKHC-PNALVN-IISNPVNS 140 (323)
T ss_pred CCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE-EeCCCccc
Confidence 9999999987765421 011 112233445555555555 344443 35677653
No 228
>PLN02928 oxidoreductase family protein
Probab=97.18 E-value=0.002 Score=65.73 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=77.2
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+ .+-+..+++.|..-|++|.+|||....+... .++ .|. +........
T Consensus 155 ~~l~gktvGIiG~----------G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-~~~-------~~~---~~~~~~~~~ 213 (347)
T PLN02928 155 DTLFGKTVFILGY----------GAIGIELAKRLRPFGVKLLATRRSWTSEPED-GLL-------IPN---GDVDDLVDE 213 (347)
T ss_pred cCCCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCChhhhh-hhc-------ccc---ccccccccc
Confidence 4678999999997 3578899999999999999999975432211 000 000 000000000
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....++++.++.||+|+++++. ++-+++=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~ 273 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVL 273 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 01235899999999999999886 44455433566788998889999844 77876554
No 229
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.16 E-value=0.003 Score=66.24 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+... .......+..+++.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEFG----------------GEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHcC----------------CcEeeHHHHHHHhccCC
Confidence 4799999999999999999887 76 89999999998876654210 01111234556678999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 245 vVI~aT~s~ 253 (423)
T PRK00045 245 IVISSTGAP 253 (423)
T ss_pred EEEECCCCC
Confidence 999998865
No 230
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.15 E-value=0.0026 Score=57.75 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|..++.-..++ ||+|+.+-||++++.... +.. +.+.++ +.. +...+.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~~-~~~-i~q~Di-----------fd~-~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAARQ-GVT-ILQKDI-----------FDL-TSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhccccc-cce-eecccc-----------cCh-hhhHhhhcCCc
Confidence 89999995 99999999999988 999999999999986642 211 111111 111 12234588999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-+....
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
No 231
>PLN00203 glutamyl-tRNA reductase
Probab=97.15 E-value=0.001 Score=71.14 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=54.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... |. +|++++++.++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 4799999999999999999987 75 79999999999988875210 000 00112245566789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998764
No 232
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.14 E-value=0.0032 Score=63.51 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=68.4
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|+++.. .+.... . +....... ...+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---D-----l~d~~~~~-~~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---E-----LMDCAFPL-LDGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---e-----hhcccchh-cCceeccCChHH
Confidence 6999999 9999999999987410 1269999996542 211110 0 11000000 022344445445
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
++++||+||++-..|... + .++ ..+.+.+++..+.|.++..++.+|+. -|.|.....
T Consensus 72 ~~~~aDiVVitAG~~~~~-~--~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv~t 132 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKE-G--MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANTNA 132 (324)
T ss_pred HhCCCCEEEEcCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHHH
Confidence 699999999998776432 1 111 11233456666777777545555544 346766543
No 233
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.13 E-value=0.0031 Score=66.98 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=68.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-C--------H
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-D--------V 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d--------~ 72 (480)
.|+.|+|+|.+|...+..+... |..|+++|+++++.+..++-.....+.+..+- .....+-.+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~-g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEE-GGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEecccccc-ccccccceeecCHHHHHHHHHHH
Confidence 3799999999999988888777 88899999999998877752221111111000 000001111111 1 2
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
.+.++++|+||.|+--|-.. .| .-+.++..+.+++|.+|++-|.-+.|
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 23367899999998221100 11 11244556778999999987654433
No 234
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.10 E-value=0.0034 Score=63.67 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=75.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|.+|.+|||...... ...+ ++
T Consensus 147 ~L~gktvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------~~ 193 (333)
T PRK13243 147 DVYGKTIGIIGFG----------RIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL----------------------GA 193 (333)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc----------------------CC
Confidence 4689999999973 5788999999999999999999765432 1111 12
Q ss_pred EEecChhhhcccCcEEEEeecCcc-ccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE-FKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ .++++.++.+|+|+++++..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 194 ~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~-~~~~~~mk~ga~lIN~aRg~~vd~~aL~ 251 (333)
T PRK13243 194 EY-RPLEELLRESDFVSLHVPLTKETYHMIN-EERLKLMKPTAILVNTARGKVVDTKALV 251 (333)
T ss_pred Ee-cCHHHHHhhCCEEEEeCCCChHHhhccC-HHHHhcCCCCeEEEECcCchhcCHHHHH
Confidence 23 478999999999999998743 333 44 456778988889999855 66765544
No 235
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.08 E-value=0.0038 Score=63.00 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=75.1
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM-GDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-...+++.|. .-|.+|.+|||....+.. ..+ +
T Consensus 142 ~L~gktvGIiG~G----------~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~~~----------------------~ 188 (323)
T PRK15409 142 DVHHKTLGIVGMG----------RIGMALAQRAHFGFNMPILYNARRHHKEAE-ERF----------------------N 188 (323)
T ss_pred CCCCCEEEEEccc----------HHHHHHHHHHHhcCCCEEEEECCCCchhhH-Hhc----------------------C
Confidence 4689999999973 57888999997 789999999998654321 111 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+++ .++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 189 ~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~ 247 (323)
T PRK15409 189 ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALI 247 (323)
T ss_pred cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 333 4899999999999999887 44444322345678998889999854 77865544
No 236
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.08 E-value=0.0039 Score=63.10 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=56.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||+|.+|...+..|+... + .+|++|++++++.+++.+... .+ ....+...+++++++.+||
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997532 4 579999999999888764210 00 0012455688888899999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999998753
No 237
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.07 E-value=0.0033 Score=61.35 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=64.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||.|.-|.+-|.+|.++ |.+|++==+... ..++..+ .++.+ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 4899999999999999999998 999775333221 1222222 23443 35788899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH-HHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv 129 (480)
+|++-+|.-.+ .++.+ .|.+.|++|+.+......
T Consensus 77 vim~L~PDe~q---------------~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 77 VVMILLPDEQQ---------------KEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred EEEEeCchhhH---------------HHHHHHHhhhhhcCCceEEecccc
Confidence 99999875322 34555 899999999987665443
No 238
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.06 E-value=0.0038 Score=62.69 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|..-|.+|.+|||...... ..+
T Consensus 142 ~L~gktvGIiG~----------G~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------------------~~~ 185 (311)
T PRK08410 142 EIKGKKWGIIGL----------GTIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------------------EEY 185 (311)
T ss_pred ccCCCEEEEECC----------CHHHHHHHHHHhhcCCEEEEECCCccccc--------------------------cCc
Confidence 468999999997 35688999999999999999999643211 112
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ .++++.++.+|+|+++.+. ++-+++=-++..+.|++.+++|.+-+ ++|.+.+-
T Consensus 186 ~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~ 243 (311)
T PRK08410 186 ER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLA 243 (311)
T ss_pred ee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 22 4799999999999999987 55555433455678998889998755 77875543
No 239
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.06 E-value=0.0027 Score=58.34 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=50.0
Q ss_pred eEEEECCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhh
Q 011650 3 KICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~ 77 (480)
||+|||.|..-.+.-. .+... .++.++.++|+|+++.+...+- .+.++++ ...-++..|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 8999999988777432 22221 2455899999999998865430 1122222 12235788999999999
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999974
No 240
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.06 E-value=0.0062 Score=60.36 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=53.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|.+|.+++..|+.. |. +|+++||+.++.+.+.+... .......+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~-----------~~~~~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELN-----------ARFPAARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHH-----------hhCCCeEEEeccchHhhhCCCC
Confidence 3799999999999999999988 76 79999999999988764210 0000001222234444578899
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999998754
No 241
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.06 E-value=0.0018 Score=66.66 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=59.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-E-ecCHHHHhh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-F-STDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~-t~d~~~a~~ 77 (480)
+|||+|+|. |++|.-+...|..+ |+++|+.+..+.+.-+.+......+. .+... + ..+.++ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 469999996 99999999999887 78899998875443222221110000 01111 1 112222 68
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
++|+||+|+|.. +...+.+.+..+..||+.|+-
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 899999999742 234444444567888887753
No 242
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.05 E-value=0.0047 Score=62.68 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=52.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCC-CCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|||+ .+|...+..+.+. + ++++.+ +|+++++.+++.+.. ++...+|+++.+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~ 63 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDI 63 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCC
Confidence 48999999 6798888888875 3 577664 799999988877521 123567889988889
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|++++++||.
T Consensus 64 Di~~V~ipt~ 73 (343)
T TIGR01761 64 DIACVVVRSA 73 (343)
T ss_pred CEEEEEeCCC
Confidence 9999999863
No 243
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.00 E-value=0.0034 Score=62.04 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=53.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|..++..|+.. | .+|++++|+.++.+++.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 3689999999999999999988 7 79999999999988876521000 01222113334578899
Q ss_pred EEEEEccCCC
Q 011650 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|...
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999988754
No 244
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.00 E-value=0.0068 Score=62.23 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=73.8
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+ .+-.-.+++.|..-|.+|.+|||...... .
T Consensus 111 g~~L~gktvGIIG~----------G~IG~~vA~~l~a~G~~V~~~dp~~~~~~--------------------------~ 154 (378)
T PRK15438 111 GFSLHDRTVGIVGV----------GNVGRRLQARLEALGIKTLLCDPPRADRG--------------------------D 154 (378)
T ss_pred CCCcCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 34679999999997 35788999999999999999999543210 0
Q ss_pred ceEEecChhhhcccCcEEEEeecCcc------cccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDE------FKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~------~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.. ...++++.++.||+|+++++... +.=++- +..+.|++.+++|++-+ ++|.+.+.
T Consensus 155 ~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVDe~AL~ 218 (378)
T PRK15438 155 EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE-KLIRSLKPGAILINACRGAVVDNTALL 218 (378)
T ss_pred cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH-HHHhcCCCCcEEEECCCchhcCHHHHH
Confidence 01 13478999999999999988632 222454 55677888889999865 88876554
No 245
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.99 E-value=0.0042 Score=66.96 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|...|.+|.+|||+.+.+.. ..+ ++
T Consensus 137 ~l~gktvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g~ 183 (526)
T PRK13581 137 ELYGKTLGIIGL----------GRIGSEVAKRAKAFGMKVIAYDPYISPERA-AQL----------------------GV 183 (526)
T ss_pred ccCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------CC
Confidence 467999999997 357889999999999999999998654322 111 23
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
++. ++++.++.+|+|+++.+.. +-+++=-.+..+.|++.+++|++-+ ++|.+.+.
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~ 241 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALA 241 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHH
Confidence 444 7999999999999999984 5555322466788988889999865 67765543
No 246
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.99 E-value=0.0034 Score=63.55 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-+..+++.|...|.+|.+|||...... . .+
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~------------------------~~ 186 (330)
T PRK12480 143 PVKNMTVAIIGTG----------RIGAATAKIYAGFGATITAYDAYPNKDL--D------------------------FL 186 (330)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEEeCChhHhh--h------------------------hh
Confidence 3578899999974 4788999999999999999999754321 0 12
Q ss_pred EEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..+++++++++|+|+++.+... .+.+--..+...|++..++|++-+ ++|.+.+.
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~ 245 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLI 245 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHH
Confidence 244688999999999999999854 333333567788988889999844 66765443
No 247
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.95 E-value=0.0052 Score=60.94 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCC
Q 011650 308 TRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
+..+..+.+..+..+.+++|+|+|+. .-+..+++.|...|++|.++|...........++
T Consensus 135 e~ai~~al~~~~~~l~gk~v~IiG~G----------~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g---------- 194 (287)
T TIGR02853 135 EGAIMMAIEHTDFTIHGSNVMVLGFG----------RTGMTIARTFSALGARVFVGARSSADLARITEMG---------- 194 (287)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEcCh----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC----------
Confidence 33344444444447789999999974 3789999999999999999998643321111111
Q ss_pred CCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC---CCChHHHhhcCcEEE
Q 011650 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN---ILDVEKLRKIGFIVY 463 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~---~~~~~~~~~~g~~y~ 463 (480)
...+. ..++.+.++++|.|+..+++.-+ + ....+.|++..+|+|.-. -.|-+..++.|.+.+
T Consensus 195 ---------~~~~~-~~~l~~~l~~aDiVint~P~~ii---~-~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 ---------LIPFP-LNKLEEKVAEIDIVINTIPALVL---T-ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKAL 259 (287)
T ss_pred ---------Ceeec-HHHHHHHhccCCEEEECCChHHh---C-HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEE
Confidence 01111 23567788999999999987642 3 345567777789999865 334567778887764
No 248
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.93 E-value=0.0062 Score=60.10 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=56.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHH-HHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRIN-AWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~-~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.+|.-++..+.+. ++.++. ++|+++++.. +..+. .+.-...++.++.++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~-----------------~Gi~~~~~~~e~ll~~~ 63 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARARE-----------------LGVKTSAEGVDGLLANP 63 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHH-----------------CCCCEEECCHHHHhcCC
Confidence 6899999999999887777753 467766 4788876532 12210 011123456666554
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+.|+|++|+|+..+. +.....+..|+.|++++
T Consensus 64 dIDaV~iaTp~~~H~------------------e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 64 DIDIVFDATSAKAHA------------------RHARLLAELGKIVIDLT 95 (285)
T ss_pred CCCEEEECCCcHHHH------------------HHHHHHHHcCCEEEECC
Confidence 679999998865321 22223345678887765
No 249
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.92 E-value=0.0048 Score=65.64 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=50.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999988887764210 00000112222 568999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99998753
No 250
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.89 E-value=0.0046 Score=60.87 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCCh-hHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.||+++||. .....++..|.++|++|.+||.-..+ .+.... .+....
T Consensus 1 ~kIafIGLG----------~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----------------------~Ga~~a 48 (286)
T COG2084 1 MKIAFIGLG----------IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----------------------AGATVA 48 (286)
T ss_pred CeEEEEcCc----------hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----------------------cCCccc
Confidence 378999983 58999999999999999999987665 333322 245677
Q ss_pred cChhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEE
Q 011650 404 SDAYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVY 463 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~ 463 (480)
.++.++++++|+||++..-+. .++. ....+.+.+++..++||...+=+. +.+++.|+.|.
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 899999999999999987754 2221 123566667778899999887653 34446677774
No 251
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.89 E-value=0.0053 Score=61.64 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=51.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|++|..++..|.++ ||+|++++|+.++...+......+. .+.+.-..++.++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999998 9999999999876554432111111 011211234556788999
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-++..
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
No 252
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0039 Score=61.34 Aligned_cols=71 Identities=23% Similarity=0.387 Sum_probs=54.8
Q ss_pred ceEEEECCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|.+ |.|+|..|.++ |..|++++.. |.|+.+.++.||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999999887 99999999988 8999986431 235566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++++|-. +. ...++++++||+.+
T Consensus 204 IVV~avG~~~~--------------i~------~~~ik~gavVIDVG 230 (285)
T PRK14189 204 IVVAAVGKRNV--------------LT------ADMVKPGATVIDVG 230 (285)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999997621 11 15688999998744
No 253
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.84 E-value=0.0089 Score=60.21 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++.+++++|+|+ ..-...+++.|..-|.+|.+|||.-.++ ....+ +
T Consensus 142 ~~l~gktvGIiG~----------GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~~----------------------~ 188 (324)
T COG1052 142 FDLRGKTLGIIGL----------GRIGQAVARRLKGFGMKVLYYDRSPNPE-AEKEL----------------------G 188 (324)
T ss_pred cCCCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCCChH-HHhhc----------------------C
Confidence 4788999999997 3578899999998899999999987632 22221 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+|.+ +++.++.+|.|+++.+- ++-+++-=.+..+.|++..++|.+-+ +.|.+.+-
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi 247 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALI 247 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 45666 99999999999999876 55555333455678888888888755 77865444
No 254
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.84 E-value=0.0015 Score=67.56 Aligned_cols=124 Identities=12% Similarity=0.140 Sum_probs=69.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCC--CCCCCCChHHHHHHhcCCCEEEe--cCHHHHhhc
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQ--LPIYEPGLEEVVKQCRGKNLFFS--TDVEKHVRE 78 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~--~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
|.|+|+|.+|..++..|++.. .+ +|++.|++.++.+++.+.. ..+.- -.+.+. .++++.+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~------------~~~d~~~~~~l~~~~~~ 67 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEA------------VQVDVNDPESLAELLRG 67 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEE------------EE--TTTHHHHHHHHTT
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeE------------EEEecCCHHHHHHHHhc
Confidence 789999999999999999872 35 8999999999999887521 11100 000111 124456789
Q ss_pred CCEEEEEccCCCCcCCC-----CCCCCCchHHHHHHHHHHHhhC-CCCcEEEEecCCCcccHHHHHHH
Q 011650 79 ANIVFVSVNTPTKTQGL-----GAGKAADLTYWESAARMIADVS-KSDKIVVEKSTVPVKTAEAIEKI 140 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~-----~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~~ 140 (480)
+|+||-|+|......-. .+-...|.+++......+.+.. +.+..++......||.+..+...
T Consensus 68 ~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~ 135 (386)
T PF03435_consen 68 CDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARY 135 (386)
T ss_dssp SSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHH
T ss_pred CCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHH
Confidence 99999999743111000 0011334433333333333322 25777777778888888765443
No 255
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.82 E-value=0.071 Score=50.64 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=28.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 77 566689887
No 256
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.82 E-value=0.0056 Score=61.16 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|++|.+|||....+.. .
T Consensus 119 ~L~gktvgIiG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~~---------------------------~ 161 (303)
T PRK06436 119 LLYNKSLGILGYG----------GIGRRVALLAKAFGMNIYAYTRSYVNDGI---------------------------S 161 (303)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcccCc---------------------------c
Confidence 4689999999973 57888999998889999999997432110 0
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
....++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|++-+ +.|.+.+.
T Consensus 162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~ 220 (303)
T PRK06436 162 SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDML 220 (303)
T ss_pred cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1135789999999999999887 44444322556678888889999765 66765443
No 257
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.81 E-value=0.0094 Score=50.29 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=49.6
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|.|+|.|.+|..++..|.+. +.+|+++|.++++++.+.+...++. ++.-.+.+++ .-+.+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~-------------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER-------------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH-------------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh-------------cCccccCE
Confidence 57999999999999999997 7799999999999999886432221 2221222211 12578999
Q ss_pred EEEEccC
Q 011650 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
++++++.
T Consensus 66 vv~~~~~ 72 (116)
T PF02254_consen 66 VVILTDD 72 (116)
T ss_dssp EEEESSS
T ss_pred EEEccCC
Confidence 9999763
No 258
>PLN03075 nicotianamine synthase; Provisional
Probab=96.81 E-value=0.011 Score=58.40 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=80.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHH---hh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKH---VR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a---~~ 77 (480)
.+|+.||+|..|.+....++...++-.++++|++++.++..++.... ..++. .+++|. .|..+. ..
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999997655555555667899999999998876642100 11221 234442 233221 36
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc-CCCceEEeeCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS-RGINFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g~~~~v~~~P 156 (480)
+.|+||+.+=-.. |-..-..+++.+.+.+++|.+++..| .-|....+.+.+.... .|.+....+.|
T Consensus 195 ~FDlVF~~ALi~~-----------dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGM-----------DKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccc-----------ccccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 7899999852111 11112678999999999999998877 2344333434332221 14455556677
Q ss_pred c
Q 011650 157 E 157 (480)
Q Consensus 157 e 157 (480)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
No 259
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.81 E-value=0.0036 Score=65.20 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=55.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||.|||+|-||..++..|+.. | .++++++|+.++.+.+.+... .+.....++..+.+..+|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999988 6 579999999999888775210 011222345556688999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 245 iVI~aT~a~ 253 (414)
T PRK13940 245 IIIAAVNVL 253 (414)
T ss_pred EEEECcCCC
Confidence 999999876
No 260
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.78 E-value=0.013 Score=60.38 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. +-.-.+++.|..-|.+|.+|||...... .
T Consensus 111 g~~l~gktvGIIG~G----------~IG~~va~~l~a~G~~V~~~Dp~~~~~~--------------------------~ 154 (381)
T PRK00257 111 GVDLAERTYGVVGAG----------HVGGRLVRVLRGLGWKVLVCDPPRQEAE--------------------------G 154 (381)
T ss_pred CCCcCcCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 346789999999973 4688899999999999999999532110 0
Q ss_pred ceEEecChhhhcccCcEEEEeecCc------ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWD------EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
... ..++++.++.||+|+++++.. .+.=++- +..+.|++.+++|++-+ ++|.+.+.
T Consensus 155 ~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVde~AL~ 218 (381)
T PRK00257 155 DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDE-AFLASLRPGAWLINASRGAVVDNQALR 218 (381)
T ss_pred Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCH-HHHhcCCCCeEEEECCCCcccCHHHHH
Confidence 011 247899999999999999973 2333554 45677888779999755 77766554
No 261
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.77 E-value=0.0098 Score=63.03 Aligned_cols=122 Identities=13% Similarity=0.176 Sum_probs=84.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. ...-.++..|.++|++|.+||......+....... +.+ ..+..++
T Consensus 2 ~~IgvIGLG----------~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~--------------~~g--~~i~~~~ 55 (470)
T PTZ00142 2 SDIGLIGLA----------VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK--------------EGN--TRVKGYH 55 (470)
T ss_pred CEEEEEeEh----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh--------------hcC--CcceecC
Confidence 479999984 48899999999999999999985443221111000 000 1244567
Q ss_pred Chhhhcc---cCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCCccc
Q 011650 405 DAYEATK---DSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPLDKW 472 (480)
Q Consensus 405 ~~~~a~~---~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~~~~ 472 (480)
++.++++ .+|+|++++...+.-+--.+.+...+.+..+|||+.+.... +.+.+.|+.|.+.|.++-.|
T Consensus 56 s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 56 TLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred CHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 8888886 48999999777654332345677777766799999998753 34556799999998765444
No 262
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.75 E-value=0.0043 Score=56.47 Aligned_cols=53 Identities=26% Similarity=0.527 Sum_probs=43.4
Q ss_pred ceEEEECCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|.| |.++|..|.++ |.+|++.+++.+ ++.+.+.+||
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99999999998 889999997521 2234588999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999999865
No 263
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.74 E-value=0.0088 Score=61.64 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=57.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCC-CEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGK-NLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~a 79 (480)
.+++|||+|..+......++...+ -.+|.+|++++++.+++.+... +..... .+..+++.++++++|
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~-----------~~~~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVA-----------ETYPQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------HhcCCCceEEEeCCHHHHHcCC
Confidence 469999999999999998887433 3589999999999888764210 000001 267789999999999
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|+.|+++
T Consensus 225 DIVvtaT~s 233 (379)
T PRK06199 225 DIVTYCNSG 233 (379)
T ss_pred CEEEEccCC
Confidence 999999864
No 264
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.72 E-value=0.003 Score=69.28 Aligned_cols=73 Identities=14% Similarity=0.327 Sum_probs=54.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|.|.+|..++..|.++ |++|+++|.|+++++.+++...+.. +....+.+++ .-+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA-------------AGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh-------------cCCccC
Confidence 4689999999999999999988 9999999999999999886433322 2222222211 115689
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|.++++++++
T Consensus 466 ~~vv~~~~d~ 475 (601)
T PRK03659 466 EAIVITCNEP 475 (601)
T ss_pred CEEEEEeCCH
Confidence 9999998753
No 265
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.72 E-value=0.05 Score=52.44 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 64 KNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.++++++|++|+-+|-. . .. ..+++.+.+++++|.+|....|+|+-. +...+++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG--~------~t------~~Iikki~~~ipEgAII~~tCTIpt~~---ly~~le~ 189 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKG--G------MQ------PDIIEKFADDIKEGAIVTHACTIPTTK---FAKIFKD 189 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCCHHH---HHHHHHH
Confidence 35677777778899999999997632 1 11 456889999999999999888997654 4445554
Q ss_pred hcCCCceEE-eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 144 NSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.++ .|+.+ .|+|-- .||.. .+..+|. ...+++..+++.++-+...
T Consensus 190 l~R-~DvgIsS~HPaa-VPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~ 235 (342)
T PRK00961 190 LGR-DDLNVTSYHPGA-VPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR 235 (342)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC
Confidence 432 23332 367743 23321 1233442 2346889999999988765
No 266
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.71 E-value=0.0053 Score=61.62 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=73.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|..-|++|.+|||...... .+ ...
T Consensus 133 ~l~g~tvgIvG~----------G~IG~~vA~~l~afG~~V~~~~~~~~~~~---~~---------------------~~~ 178 (312)
T PRK15469 133 HREDFTIGILGA----------GVLGSKVAQSLQTWGFPLRCWSRSRKSWP---GV---------------------QSF 178 (312)
T ss_pred CcCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEEeCCCCCCC---Cc---------------------eee
Confidence 578899999997 35788999999999999999998643211 00 001
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
....+++++++++|+|+++.+.. +-+++=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~ 237 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLL 237 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHH
Confidence 11357899999999999998874 3334322456778988889999755 77766543
No 267
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.71 E-value=0.045 Score=52.83 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 64 KNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.++++++|++|+-+|-. . .. ...++.+.+++++|.+|....|+|+-. +..+++.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG--~------~q------~~Iikkii~~lpEgAII~~tCTIpt~~---ly~ilE~ 187 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKG--N------KQ------PDIIKKFIDDIPEGAIVTHACTIPTTK---FAKIFED 187 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCChHH---HHHHHHh
Confidence 45677787778899999999997632 1 11 356889999999999999888997654 3444444
Q ss_pred hcCCCceEE-eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 144 NSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.++ .|+.+ .|+|-- .||.. +...| +-+ ..+++..+++.++-+...
T Consensus 188 l~R-~DvgVsS~HPaa-VPgt~-----~q~Yi-~eg---yAtEEqI~klveL~~sa~ 233 (340)
T TIGR01723 188 LGR-EDLNVTSYHPGC-VPEMK-----GQVYI-AEG---YASEEAVNKLYELGKKAR 233 (340)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-----CceEe-ecc---cCCHHHHHHHHHHHHHhC
Confidence 332 23333 367742 34432 11123 322 236889999999988765
No 268
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.70 E-value=0.0086 Score=62.45 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=74.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-+..+++.|..-|.+|.+|||..... . ..+
T Consensus 148 ~L~gktvGIiG~----------G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~---------------------~~~ 191 (409)
T PRK11790 148 EVRGKTLGIVGY----------GHIGTQLSVLAESLGMRVYFYDIEDKLP-----L---------------------GNA 191 (409)
T ss_pred cCCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCCcccc-----c---------------------CCc
Confidence 578999999997 3568899999999999999999963210 0 123
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..++++.++.||+|+++.+. ++-+++--.+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~ 250 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALA 250 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHH
Confidence 4556899999999999999887 44555433456678888889999854 77765443
No 269
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.70 E-value=0.012 Score=60.61 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=55.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|+.|||+|-||.-.|.+|+.+ | .+|++.+|+.++...|.+... +....-+++.+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~~----------------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKLG----------------AEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHhC----------------CeeecHHHHHHhhhhCC
Confidence 3699999999999999999998 6 689999999999998876311 12222345556789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999998665
No 270
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0036 Score=62.46 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=45.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHH-hh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKH-VR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a-~~ 77 (480)
|+||+|+|. ||-|.-+...|+.+ |..++..+.-++.+=+.+.+- .|.+... -.++++. |.++. ..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~-----~p~l~g~------~~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDV-----HPNLRGL------VDLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHh-----Ccccccc------cccccccCChhhhhcc
Confidence 689999985 99999999999986 677877776544321222211 1111100 0122222 33332 45
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||+|+|.
T Consensus 70 ~~DvvFlalPh 80 (349)
T COG0002 70 ECDVVFLALPH 80 (349)
T ss_pred cCCEEEEecCc
Confidence 69999999985
No 271
>PLN02306 hydroxypyruvate reductase
Probab=96.69 E-value=0.01 Score=61.32 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=76.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCeEEEECCCCChhHHH--hhhhcccCCCCCCCCCCCCCCCCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM-GDKARLSIYDPQVPQEHIQ--RDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+.+++|+|+|+. +-...+++.|. .-|.+|.+|||+...+... ..++ .++. +.....
T Consensus 162 ~L~gktvGIiG~G----------~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~-------~~~~~~ 221 (386)
T PLN02306 162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLK-------ANGEQP 221 (386)
T ss_pred CCCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccc-------cccccc
Confidence 4689999999973 47888999985 7899999999987532110 0110 0000 000000
Q ss_pred CceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
..+.+..++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~ 283 (386)
T PLN02306 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALV 283 (386)
T ss_pred ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 1123346899999999999998887 44444333455678998889999865 77866554
No 272
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.69 E-value=0.0072 Score=60.28 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=67.2
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... .++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~----------------------~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA----------------------DGF 60 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH----------------------cCC
Confidence 468999999997 479999999999999999999754332222221 123
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.. .++.++++.||+|+++.+.++-+++=.+.+...|++.++++=.
T Consensus 61 ~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 61 EV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC
Confidence 33 3899999999999999987665544235677788766555433
No 273
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.69 E-value=0.008 Score=59.22 Aligned_cols=53 Identities=21% Similarity=0.422 Sum_probs=44.0
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|. +|.++|..|..+ |..|+.++... .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999988531 23455688999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999876
No 274
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.68 E-value=0.0086 Score=60.71 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=71.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHH-HhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL-MGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L-~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-+..+++.| ...|.+|.+|||...... . ..
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-----------------------~~ 187 (332)
T PRK08605 143 SIKDLKVAVIGTG----------RIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-----------------------TY 187 (332)
T ss_pred eeCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCccHhH--H-----------------------hh
Confidence 4678999999973 4778899998 567999999999865421 1 11
Q ss_pred eEEecChhhhcccCcEEEEeecCccccc-ccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKN-LDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+....+++++++++|+|+++++...... +--..+.+.|++..++||+.+ +.+.+
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~ 244 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK 244 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHH
Confidence 3345689999999999999988755332 222346778888889999865 44543
No 275
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.67 E-value=0.011 Score=62.81 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
-.+|+++||. .....+++.|.++|++|.+||.-....+...... ...+. ..+..+
T Consensus 6 ~~~IG~IGLG----------~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~--------------~~~Ga-~~~~~a 60 (493)
T PLN02350 6 LSRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERA--------------KKEGN-LPLYGF 60 (493)
T ss_pred CCCEEEEeeH----------HHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh--------------hhcCC-cccccC
Confidence 3579999985 4899999999999999999998655432211100 00000 113356
Q ss_pred cChhhhccc---CcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCC
Q 011650 404 SDAYEATKD---SHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKP 468 (480)
Q Consensus 404 ~~~~~a~~~---~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~ 468 (480)
.++.++++. +|+|+++...++--+--++.+...+.+..+|||+.+.... +.+++.|++|.+.|.+
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVS 134 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVS 134 (493)
T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCc
Confidence 788888876 9999999988763322224566667666699999999753 3455679999998764
No 276
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.66 E-value=0.0092 Score=59.50 Aligned_cols=109 Identities=15% Similarity=0.244 Sum_probs=76.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+...+.
T Consensus 2 ~~Ig~IGlG~----------mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----------------------~g~~~~~ 49 (296)
T PRK15461 2 AAIAFIGLGQ----------MGSPMASNLLKQGHQLQVFDVNPQAVDALVD----------------------KGATPAA 49 (296)
T ss_pred CeEEEEeeCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------cCCcccC
Confidence 3799999754 8899999999999999999986443221111 1234567
Q ss_pred ChhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEe
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~i 465 (480)
++.++++++|+|+++++.+. .+.. ..+.+...+++..+|+|+..+.+. +.+.+.|+.|..-
T Consensus 50 s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 50 SPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred CHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 88899999999999998874 3332 112344455556699999888764 2344568887543
No 277
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.66 E-value=0.0075 Score=60.72 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=73.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|..-|.+|.+|||....+. .
T Consensus 145 ~l~gktvgIiG~----------G~IG~~vA~~l~~fgm~V~~~~~~~~~~~----------------------------~ 186 (317)
T PRK06487 145 ELEGKTLGLLGH----------GELGGAVARLAEAFGMRVLIGQLPGRPAR----------------------------P 186 (317)
T ss_pred ccCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCCccc----------------------------c
Confidence 357999999997 35788999999999999999998643211 1
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
. ..++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 187 ~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~ 244 (317)
T PRK06487 187 D-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALA 244 (317)
T ss_pred c-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1 13789999999999999987 55555433455678888889999865 78866543
No 278
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.65 E-value=0.038 Score=58.34 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=66.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++. +.++...+ ++ ... .-.+.......+...++|
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~-----------~l-~~~-~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALE-----------EL-GEL-GIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHH-----------HH-Hhc-CCEEEeCCcchhHhhcCC
Confidence 4799999999999999999998 99999999985 22221110 00 000 001222222223356799
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+||.+...+.+ ++. +..+-+ .+....+ ..+|.+..|..-.||.. +..+|+..+
T Consensus 71 ~vv~~~g~~~~--------~~~---~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 71 LVVVSPGVPLD--------SPP---VVQAHKKGIEVIGEVELAYRFSK-APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred EEEECCCCCCC--------CHH---HHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 99998653321 222 222211 1122223 56777767776666655 567776643
No 279
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.64 E-value=0.021 Score=56.99 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=76.6
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+...+.+++|+|+|.. .-+..++..|.+.|++|.++|...........++ .
T Consensus 146 ~~~~l~g~kvlViG~G----------~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G---~---------------- 196 (296)
T PRK08306 146 TPITIHGSNVLVLGFG----------RTGMTLARTLKALGANVTVGARKSAHLARITEMG---L---------------- 196 (296)
T ss_pred CCCCCCCCEEEEECCc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---C----------------
Confidence 3456789999999964 3788999999999999999999854433222221 0
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEE
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~ 464 (480)
. ....+++.+.++++|.||..+++.. ++ +...+.|++..+|||.-.- .+-+..++.|+...+
T Consensus 197 ~-~~~~~~l~~~l~~aDiVI~t~p~~~---i~-~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~ 261 (296)
T PRK08306 197 S-PFHLSELAEEVGKIDIIFNTIPALV---LT-KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL 261 (296)
T ss_pred e-eecHHHHHHHhCCCCEEEECCChhh---hh-HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence 0 1112356778899999999887653 22 4556678877899998543 222345566777654
No 280
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.64 E-value=0.0069 Score=55.09 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=64.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCC----h-------HHHHHHhcCCCEEEec
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPG----L-------EEVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~----l-------~~~~~~~~~~~l~~t~ 70 (480)
.||.|+|.|.+|..-+..+... |++|+.+|.++++.+++........+.. . .+..+. -.....
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 94 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEH----PESYES 94 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHH----CCHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHH----HHHhHH
Confidence 4899999999999988888887 9999999999998888775322111000 0 000000 000112
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
.+.+.++.+|+||.+.--+-.. .|- -+.++..+.++++.+|++-|
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~-------~P~-----lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKR-------APR-----LVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHhhCcEEeeecccCCCC-------CCE-----EEEhHHhhccCCCceEEEEE
Confidence 3455678999999876543211 221 13345556688999999865
No 281
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.63 E-value=0.013 Score=58.09 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=44.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHH--HHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRI--NAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (480)
+||||||+|.+|..++..+.+. ++.++. ++|++++.- +..++-+.+.. .+++++.+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es~gla~A~~~Gi~~~------------------~~~ie~LL~~ 65 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPESDGLARARRLGVATS------------------AEGIDGLLAM 65 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhhHHHHHHHHcCCCcc------------------cCCHHHHHhC
Confidence 4799999999999988877763 477766 578887642 22222222221 23444444
Q ss_pred ---hcCCEEEEEccCC
Q 011650 77 ---REANIVFVSVNTP 89 (480)
Q Consensus 77 ---~~aDvVii~Vptp 89 (480)
.+.|+||+|+|..
T Consensus 66 ~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 66 PEFDDIDIVFDATSAG 81 (302)
T ss_pred cCCCCCCEEEECCCHH
Confidence 4689999998753
No 282
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.62 E-value=0.0091 Score=62.62 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=52.8
Q ss_pred ceEEEECCChhHHH--HHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGP--TMAVIALK---CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~---~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||.|.. .+ +...|+.. .++-+|+++|+|+++.+.+.+- ...+.++. ..-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eA 71 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEA 71 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHH
Confidence 89999999985 33 33334432 2467999999999888764420 01111111 12357899999999
Q ss_pred hhcCCEEEEEcc
Q 011650 76 VREANIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+++||+||.++-
T Consensus 72 l~gADfVi~~ir 83 (437)
T cd05298 72 FTDADFVFAQIR 83 (437)
T ss_pred hCCCCEEEEEee
Confidence 999999999975
No 283
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.60 E-value=0.064 Score=59.74 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=85.3
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC----c
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP----E 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (480)
||+|+|. +.+.+.++++.++++++++|++-+++.....+.+.+.+... ..-++..+| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~---~~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGAR---IGQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhcccc---CCeEEecCCcCcCc
Confidence 6889873 34678899999999999999987666544444444433321 111466666 5
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.....++..++++...+++- +.+..++++++.++++++.++ ..+..++++ .-+++-++.-.-..+..++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVLC-ALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555667788877777664 434446788999999999985 466666664 45556666655555555555544
No 284
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.015 Score=57.58 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|.+ +.-..+++..|.++|+.|.+++-.-
T Consensus 153 ~~i~l~Gk~V~vIG~s---------~ivG~PmA~~L~~~gatVtv~~~~t------------------------------ 193 (301)
T PRK14194 153 TCGDLTGKHAVVIGRS---------NIVGKPMAALLLQAHCSVTVVHSRS------------------------------ 193 (301)
T ss_pred hCCCCCCCEEEEECCC---------CccHHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 4457899999999964 2588999999999999999986421
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.+-.-+| +++..+|||.-
T Consensus 194 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 194 ------TDAKALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ------CCHHHHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 256778899999999999998755333 45557999986
No 285
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.58 E-value=0.022 Score=60.73 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=65.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCE-EEecCH-------
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNL-FFSTDV------- 72 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l-~~t~d~------- 72 (480)
||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-+..+. +..-++.. ..+-. ..+.+.
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHHH
Confidence 799999999999877777766 8899999999999988876322211 11000000 00000 011221
Q ss_pred -HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 73 -EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 -~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.+.++|++|.|+..|... .|. ...++..+.++++.+|++.+.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~-------aP~-----lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKP-------APK-----LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCccc-------Ccc-----hHHHHHHHhcCCCCEEEEEcc
Confidence 11135799999998765321 121 123555666788888877553
No 286
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.015 Score=60.82 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
.+|.|||+|.+|.++|..|.++ |++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 5799999999999999999988 9999999987654
No 287
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.52 E-value=0.013 Score=58.22 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=66.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+....+
T Consensus 3 ~~IgviG~G~----------mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~ 50 (296)
T PRK11559 3 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----------------------AGAETAS 50 (296)
T ss_pred ceEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999744 7889999999999999999986543221111 1245567
Q ss_pred ChhhhcccCcEEEEeecCcc-ccccc--HHHHHhhcCCCCEEEEcCCCCCh
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLD--YQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
++.++++++|+|+++++-+. .+..- .+.+...+++..+|+|+......
T Consensus 51 ~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~ 101 (296)
T PRK11559 51 TAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL 101 (296)
T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHH
Confidence 88899999999999987543 22210 12345556666799999887753
No 288
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.51 E-value=0.023 Score=54.59 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=55.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---cCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN---SDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~---~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.||.|+|.|.+|.+.|..+..++...++.++|+++++.+.-. +...++. ...++..+.|+.. -++
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~-----------~~~~V~~~~Dy~~-sa~ 88 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFL-----------STPNVVASKDYSV-SAN 88 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccc-----------cCCceEecCcccc-cCC
Confidence 489999999999999988887633468999999988654211 1112221 2356777778764 789
Q ss_pred CCEEEEEccCCC
Q 011650 79 ANIVFVSVNTPT 90 (480)
Q Consensus 79 aDvVii~Vptp~ 90 (480)
++++|++.....
T Consensus 89 S~lvIiTAGarq 100 (332)
T KOG1495|consen 89 SKLVIITAGARQ 100 (332)
T ss_pred CcEEEEecCCCC
Confidence 999999987643
No 289
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.49 E-value=0.018 Score=53.52 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=51.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecC---HHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STD---VEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d---~~~a 75 (480)
+++.|+|. |.+|..++..|++. |++|++++++.++.+.+.+.... . ....+.. ..+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~~-----------~-~~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLRA-----------R-FGEGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHh-----------h-cCCcEEEeeCCCHHHHHHH
Confidence 57999995 99999999999998 89999999999888776542100 0 0011211 122 2356
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
++++|+||.|+|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999997654
No 290
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.49 E-value=0.0063 Score=66.22 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=51.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-C-CCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPI-Y-EPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~-~-e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|.|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++...+. + +...++.+++ .-++++|
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~-------------a~i~~a~ 483 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL-------------AHLDCAR 483 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh-------------cCccccC
Confidence 578999999999999999998 999999999999999988633221 1 2211111111 1146899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
.+++++++
T Consensus 484 ~viv~~~~ 491 (558)
T PRK10669 484 WLLLTIPN 491 (558)
T ss_pred EEEEEcCC
Confidence 99999864
No 291
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.49 E-value=0.012 Score=61.56 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=53.1
Q ss_pred ceEEEECCChh-HHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYV-GGPTMAVIALK---CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~---~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
|||+|||.|.. ...+...|++. .++.+|+++|+|+++.+.+.+- ...++++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 22233444432 2567999999999888764320 01111211 123578999999999
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999999753
No 292
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.46 E-value=0.018 Score=57.41 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=75.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.-..-+.... .+...+.+
T Consensus 2 ~Ig~IGlG----------~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~s 49 (299)
T PRK12490 2 KLGLIGLG----------KMGGNMAERLREDGHEVVGYDVNQEAVDVAGK----------------------LGITARHS 49 (299)
T ss_pred EEEEEccc----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 68999873 47889999999999999999986432211111 12455678
Q ss_pred hhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011650 406 AYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
+++.++. +|+|+++++.+ .+++. ++.+...+++..+|||+.+.-... .+.+.|+.|..-
T Consensus 50 ~~~~~~~~~~advVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vda 118 (299)
T PRK12490 50 LEELVSKLEAPRTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDC 118 (299)
T ss_pred HHHHHHhCCCCCEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeC
Confidence 8887766 69999999998 54443 245666676666999998876632 334568888663
No 293
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.45 E-value=0.026 Score=56.36 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=75.8
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.-...+.... .+....++
T Consensus 2 ~Ig~IGlG----------~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~~ 49 (301)
T PRK09599 2 QLGMIGLG----------RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----------------------EGATGADS 49 (301)
T ss_pred EEEEEccc----------HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 68999973 48899999999999999999996433221111 23456677
Q ss_pred hhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 406 AYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 406 ~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
+.+.++. +|+|+++++.. ..++. ++.+...+++..+|||+.+.... +.+++.|+.|...+
T Consensus 50 ~~e~~~~~~~~dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 50 LEELVAKLPAPRVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHhhcCCCCEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 8877765 69999999887 43432 34566666666699999887653 34456688886653
No 294
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.42 E-value=0.019 Score=51.65 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=49.2
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-+ .+|.|+|..|.++ |..|+..+.. |.++++.++.||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~---------------------------------T~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSK---------------------------------TKNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TT---------------------------------SSSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCC---------------------------------CCcccceeeecc
Confidence 579999977 6999999999998 8999988753 235556688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|-.- . ...++++.+||+.++
T Consensus 82 IVVsa~G~~~~i--------------~------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 82 IVVSAVGKPNLI--------------K------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--C
T ss_pred EEeeeecccccc--------------c------cccccCCcEEEecCC
Confidence 999999865211 1 246789999987543
No 295
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.42 E-value=0.013 Score=58.91 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=71.9
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+++|+|+|+ .+-...+++.|..-|.+|.+||+....+ .. ..
T Consensus 145 l~gktvgIiG~----------G~IG~~va~~l~~fg~~V~~~~~~~~~~-~~--------------------------~~ 187 (314)
T PRK06932 145 VRGSTLGVFGK----------GCLGTEVGRLAQALGMKVLYAEHKGASV-CR--------------------------EG 187 (314)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCcccc-cc--------------------------cc
Confidence 57999999997 3578889999999999999999853211 00 01
Q ss_pred EecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 402 VASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
..++++.++.||+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 188 -~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~ 244 (314)
T PRK06932 188 -YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALL 244 (314)
T ss_pred -cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 24789999999999999986 55555433455678888889999854 77876544
No 296
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.013 Score=60.51 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred ceEEEECCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|..+.+--. .+.. ..++.++.++|+++++.+.+.. -.+.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~--------~~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAI--------LAKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHH--------HHHHHHHhhCCCeEEEEecCHHHHh
Confidence 57999999999887432 1221 1367899999999998874332 012233321 223578899999999
Q ss_pred hcCCEEEEEcc
Q 011650 77 REANIVFVSVN 87 (480)
Q Consensus 77 ~~aDvVii~Vp 87 (480)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999974
No 297
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.40 E-value=0.007 Score=55.47 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=32.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
||+|||+|.+|..+|..|++. |. +++++|.+.-....+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~R 41 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLNR 41 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchhc
Confidence 689999999999999999998 77 59999988633334443
No 298
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.39 E-value=0.0097 Score=60.40 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=43.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+|+|. |++|.-+...|+++ +|. +..+..+.+.-+.+.-+ + ..+.+.+.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~~~-------g----------~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELSFK-------G----------KELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeeeeC-------C----------ceeEEeeCCHHHH
Confidence 689999995 99999999999986 554 46665543221111100 0 1233332112235
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+||.|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 789999999874
No 299
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.35 E-value=0.026 Score=56.41 Aligned_cols=76 Identities=17% Similarity=0.354 Sum_probs=53.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH------HHHHHcCC--CCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPR------INAWNSDQ--LPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~------v~~l~~g~--~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
|+|+|-|+ |++|+.+...|..+ ||.|.+.=|+++. +.++.... ..+.. ..+.-..+.
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~------------aDL~d~~sf 72 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFK------------ADLLDEGSF 72 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCcccceEEe------------ccccccchH
Confidence 68999985 99999999999999 9999999998876 23333211 11111 234445677
Q ss_pred HHHhhcCCEEEEEccCCCCc
Q 011650 73 EKHVREANIVFVSVNTPTKT 92 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~ 92 (480)
.+++.+||.||=+- +|.+.
T Consensus 73 ~~ai~gcdgVfH~A-sp~~~ 91 (327)
T KOG1502|consen 73 DKAIDGCDGVFHTA-SPVDF 91 (327)
T ss_pred HHHHhCCCEEEEeC-ccCCC
Confidence 88899999987553 45443
No 300
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.35 E-value=0.024 Score=56.56 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=75.5
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.++|.+|.+||......+..... +.....+
T Consensus 2 ~Ig~IGlG----------~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s 49 (298)
T TIGR00872 2 QLGLIGLG----------RMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED----------------------RTTGVAN 49 (298)
T ss_pred EEEEEcch----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----------------------CCcccCC
Confidence 68999973 478899999999999999999865432221111 1112234
Q ss_pred hhh---hcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCC
Q 011650 406 AYE---ATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSIGKPL 469 (480)
Q Consensus 406 ~~~---a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~ 469 (480)
+.+ +++.+|+|+++++....++. .+++...+++..+|||+.+..... .+.+.|+.|...+...
T Consensus 50 ~~~~~~~~~~~dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 50 LRELSQRLSAPRVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHhhcCCCCEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 444 45678999999999855543 356666666656999999886432 3346789998877543
No 301
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.35 E-value=0.014 Score=64.16 Aligned_cols=72 Identities=10% Similarity=0.240 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|-|+|+|.+|..+|..|.++ |++++++|.|+++++.+++...+++ +..-.+.+++ .-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLES-------------AGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHh-------------cCCCcC
Confidence 3688999999999999999998 9999999999999999986433322 2222222211 114689
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+++|+++
T Consensus 466 ~~vvv~~~d 474 (621)
T PRK03562 466 EVLINAIDD 474 (621)
T ss_pred CEEEEEeCC
Confidence 999999864
No 302
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.34 E-value=0.044 Score=48.27 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=60.1
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++.++++++|.|+|-+. .-..+++..|.++|+.|.+.+-.-
T Consensus 22 ~~~~~~gk~v~VvGrs~---------~vG~pla~lL~~~gatV~~~~~~t------------------------------ 62 (140)
T cd05212 22 EGVRLDGKKVLVVGRSG---------IVGAPLQCLLQRDGATVYSCDWKT------------------------------ 62 (140)
T ss_pred cCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 45578999999999543 778899999999999999977421
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.++++.||.||.+|..+.+ ++.+.+ ++..+|+|.-
T Consensus 63 ------~~l~~~v~~ADIVvsAtg~~~~--i~~~~i----kpGa~Vidvg 100 (140)
T cd05212 63 ------IQLQSKVHDADVVVVGSPKPEK--VPTEWI----KPGATVINCS 100 (140)
T ss_pred ------cCHHHHHhhCCEEEEecCCCCc--cCHHHc----CCCCEEEEcC
Confidence 2467789999999999999965 454333 4455777754
No 303
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.31 E-value=0.014 Score=59.21 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=34.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAW 42 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
||||.|.|+ |++|..++..|.++ .|++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHHHHHHh
Confidence 789999996 99999999999875 169999999987655444
No 304
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.29 E-value=0.041 Score=53.97 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=55.5
Q ss_pred eEEEECCChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH--hcCCCEEE-ecCHHH---H
Q 011650 3 KICCIGAGYVGGPTMAVIAL-KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ--CRGKNLFF-STDVEK---H 75 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~--~~~~~l~~-t~d~~~---a 75 (480)
||++||.|.+-++. ..|++ .+++..|.++|++++.++.-++ ++.. ....++++ +.|..+ .
T Consensus 123 rVaFIGSGPLPlT~-i~la~~~~~~~~v~~iD~d~~A~~~a~~------------lv~~~~~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 123 RVAFIGSGPLPLTS-IVLAKQHGPGARVHNIDIDPEANELARR------------LVASDLGLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp EEEEE---SS-HHH-HHHH--HTT--EEEEEESSHHHHHHHHH------------HHH---HH-SSEEEEES-GGGG-GG
T ss_pred eEEEEcCCCcchHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHH------------HHhhcccccCCeEEEecchhccccc
Confidence 89999999999974 44553 3345679999999998776543 1110 01234544 334322 2
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.++|+|+++---.. +-+.-.++++.+.+++++|+.|+.+|.-
T Consensus 190 l~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp ----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 568899999954321 1122378899999999999999999754
No 305
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.29 E-value=0.018 Score=56.73 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=55.1
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-|. +|.|+|..|..+ |..|++++.. |.++++.++.||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998742 235566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-. +. ..+++++++||+..
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDvG 231 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDVG 231 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEcc
Confidence 99999976521 11 15688999998744
No 306
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.03 Score=55.07 Aligned_cols=102 Identities=19% Similarity=0.336 Sum_probs=71.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-Ee---cCHHHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FS---TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t---~d~~~a~~~ 78 (480)
||+|||.|.+|+--|....-. |-+|+..|+|.+|+..+..- . .+++. .. .++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~------------f----~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDL------------F----GGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHh------------h----CceeEEEEcCHHHHHHHhhh
Confidence 799999999999977766555 89999999999988766531 0 12321 11 246677889
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|++|=+|-.|-.. .|- -+.++..+.+++|.+||+-.-=..|+.
T Consensus 232 aDlvIgaVLIpgak-------aPk-----Lvt~e~vk~MkpGsVivDVAiDqGGc~ 275 (371)
T COG0686 232 ADLVIGAVLIPGAK-------APK-----LVTREMVKQMKPGSVIVDVAIDQGGCF 275 (371)
T ss_pred ccEEEEEEEecCCC-------Cce-----ehhHHHHHhcCCCcEEEEEEEcCCCce
Confidence 99999888655322 333 357788888999999987543333443
No 307
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.25 E-value=0.021 Score=56.72 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=69.8
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|.+|.+||+....-+.... .+....++
T Consensus 1 ~IgvIG~G~----------mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~~ 48 (291)
T TIGR01505 1 KVGFIGLGI----------MGSPMSINLAKAGYQLHVTTIGPEVADELLA----------------------AGAVTAET 48 (291)
T ss_pred CEEEEEecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCcccCC
Confidence 488999744 8899999999999999999986433221111 12234567
Q ss_pred hhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
+.++++++|+|+++++-+. .+.. ..+.+...+++..+|+|+....... .+++.|+.|..
T Consensus 49 ~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 49 ARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 8899999999999988642 2211 1123444556667899988766531 23345666654
No 308
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.24 E-value=0.0053 Score=61.41 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCC-CCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEc
Q 011650 12 VGGPTMAVIALKCPSIEVAVVDISVPRINA----WNSDQLP-IYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSV 86 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~g~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~V 86 (480)
||..+|..+..+ |++|++.|.|..-.+. +..+..+ ..-..+...-......+++-+.|..+ ++++|+++.+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 788999999998 9999999999765542 1111000 00000000000001124556677766 89999996555
Q ss_pred cCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCccc
Q 011650 87 NTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAI 165 (480)
Q Consensus 87 ptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~ 165 (480)
- -|++...+++.+|.+..++..+. .+.|+.+.+....-....+... |.+| ++|.+..+
T Consensus 78 ~-------------edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv-g~h~---fspa~~m~---- 136 (380)
T KOG1683|consen 78 F-------------EDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV-GMHF---FSPAHWMQ---- 136 (380)
T ss_pred h-------------hhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc-cccc---cCHHHHHH----
Confidence 3 36677789999999999998876 6667777654322111111111 2222 34432221
Q ss_pred cccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 011650 166 NDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVS 245 (480)
Q Consensus 166 ~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~ 245 (480)
+. .|+.+-. + +......+.+.-.... +-++.+.+. +.+..| .+.-.|++++.++-...|+|++
T Consensus 137 --Ll---Eii~~~~-t--S~~~iA~Ain~~~~~g-k~~vvVg~c-----~gf~v~---r~l~~y~~~~~~~l~e~g~~p~ 199 (380)
T KOG1683|consen 137 --LL---EIILALY-T--SKLTIATAINGGSPAG-KLPVVVGNC-----CGFRVN---RLLPPYTIGLNELLLEIGADPW 199 (380)
T ss_pred --HH---HHHHhcC-C--CchHHHHHHhcccccC-CccEEeccC-----CceEEE---ecccHHHHHHHHHHHHcCCCHH
Confidence 11 0111111 1 1223333333333322 122333321 222222 2335677888889999999999
Q ss_pred HHHHHhcCC
Q 011650 246 QVSHAIGFD 254 (480)
Q Consensus 246 ~v~~~~~~~ 254 (480)
.+....+.-
T Consensus 200 ~iD~~~t~f 208 (380)
T KOG1683|consen 200 LIDSLITKF 208 (380)
T ss_pred HHHHHHHhc
Confidence 999888753
No 309
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.22 E-value=0.021 Score=56.76 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=72.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|++|.+||.....+.+ .. .+...+.+
T Consensus 2 ~Ig~IGlG~----------MG~~ma~~L~~~G~~v~v~~~~~~~~~~-~~----------------------~g~~~~~s 48 (292)
T PRK15059 2 KLGFIGLGI----------MGTPMAINLARAGHQLHVTTIGPVADEL-LS----------------------LGAVSVET 48 (292)
T ss_pred eEEEEccCH----------HHHHHHHHHHHCCCeEEEEeCCHhHHHH-HH----------------------cCCeecCC
Confidence 689999743 7889999999999999999865322221 11 12445678
Q ss_pred hhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
+.++++.+|+|++++..+. .++. ....+...+.+..+|+|+..+-+. +.+++.|..|..
T Consensus 49 ~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 49 ARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8898999999999999863 2221 111233334445699999887765 444566777755
No 310
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.03 Score=55.11 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=61.3
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|+|+|.| +.-..+++..|.++|+.|.++....
T Consensus 152 ~~i~l~Gk~v~vIG~S---------~ivG~Pla~lL~~~gatVtv~~s~t------------------------------ 192 (284)
T PRK14179 152 YNVELEGKHAVVIGRS---------NIVGKPMAQLLLDKNATVTLTHSRT------------------------------ 192 (284)
T ss_pred hCCCCCCCEEEEECCC---------CcCcHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 4456899999999963 3678899999999999999983211
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.|-.-+| +++..+|||.-
T Consensus 193 ------~~l~~~~~~ADIVI~avg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 193 ------RNLAEVARKADILVVAIGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCccccCCHHH------ccCCcEEEEec
Confidence 256778899999999999999854332 45556999974
No 311
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=96.21 E-value=0.11 Score=51.62 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=66.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+.+||+|+|.+|.-+|.++... |..|++||.-...- ...+ .++.+. +.++++..||+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~-~~~a-------------------~gvq~v-sl~Eil~~ADF 203 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMA-LAEA-------------------FGVQLV-SLEEILPKADF 203 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchH-HHHh-------------------ccceee-eHHHHHhhcCE
Confidence 3689999999999999998876 88899988632111 1111 123433 46778999998
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|-+=+|- .|+++.+.+ ..-...+++|.-||+.|-...=-+..+.+.++.
T Consensus 204 itlH~PL-----------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 204 ITLHVPL-----------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEccCC-----------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8776653 234443322 233445788999998774332223445555554
No 312
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.36 Score=47.82 Aligned_cols=228 Identities=13% Similarity=0.171 Sum_probs=130.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH----HcCCCCCCCCChHHHHHHhcCCCEE---EecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAW----NSDQLPIYEPGLEEVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l----~~g~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.++-++|+|.+..-+|..+..++ ..++-.+.+-..+-+.+ +.+. .++-.+-.+.- ....|+.. +-.|++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~-ql~l~~q~eah-r~leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTP-QLYLQGQGEAH-RQLEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCC-eEEEEeccHHH-HhhcCceehhHHHhhHH
Confidence 457899999999999999999873 45676777654443333 3321 12222222211 11234443 345677
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHH-hhCCC-CcEEEEecCCCcccHHHHHHHHHhhcCCCceE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-DVSKS-DKIVVEKSTVPVKTAEAIEKILMHNSRGINFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-+.+|+|||+.. -.+++++|- +.++. .++|.+++|...+. .+...+.+.+ .+..
T Consensus 81 ~~~~dwqtlilav~aDa---------------Y~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~~--~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPADA---------------YYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKAG--RDAE 141 (431)
T ss_pred HhhchhheEEEEeecHH---------------HHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhhC--CCce
Confidence 76778899999998631 245666653 23332 34566666764432 2333333333 2333
Q ss_pred EeeCC-----ccc----ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH------
Q 011650 152 ILSNP-----EFL----AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK------ 216 (480)
Q Consensus 152 v~~~P-----e~~----~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|++-. .+. .|-++..... -.+|.+|+.-. +....+.+.+++...+- ....+.++..||.--
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkav-KkriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAV-KKRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHH-hHheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 33211 111 1112211111 12577886533 45678889999988653 344556777777521
Q ss_pred --HHH----------------------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 217 --LAA----------------------------NAFLAQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 217 --l~~----------------------------N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++- -+...-+...+-|++++..++|+..-.+++.++.+
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 111 12333455678899999999999999999999876
No 313
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.022 Score=55.98 Aligned_cols=71 Identities=28% Similarity=0.395 Sum_probs=53.8
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-| .+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999988 8999988532 223455688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-.- . ..++++|++|++.+
T Consensus 203 IvV~AvG~p~~i---------~-----------~~~vk~GavVIDvG 229 (285)
T PRK14191 203 IVCVGVGKPDLI---------K-----------ASMVKKGAVVVDIG 229 (285)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 23468899998743
No 314
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.07 Score=56.58 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|+|+|..|.++|..|.+. |++|+++|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5799999999999999999998 99999999875
No 315
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.17 E-value=0.021 Score=60.21 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=38.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 36899999999999999999998 9999999999999998875
No 316
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.089 Score=56.29 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=47.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|+|+|..|.+.+..|... |++|+++|.++.+.+.+.+.... +.......+.+.++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888887 99999999887666554431111 1111122234678998
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.+-.-|
T Consensus 74 VV~SpGi~ 81 (488)
T PRK03369 74 VVTSPGFR 81 (488)
T ss_pred EEECCCCC
Confidence 88875544
No 317
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.17 E-value=0.055 Score=51.75 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=67.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~----------~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++|+|.|+|.+|..+|..|.+. |.+|+ +.|. |.+.+..+++..-.+.. . .+ .+..
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~--~--------~~-~~~~- 97 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG--F--------PG-AERI- 97 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc--C--------CC-ceec-
Confidence 5899999999999999999998 99998 5576 55555554432111100 0 00 0111
Q ss_pred CHHHHh-hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCc
Q 011650 71 DVEKHV-REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGIN 149 (480)
Q Consensus 71 d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.++.+ .+||+++-|.++.... ...+. .++ .-+|.++...|-| .+..+.|++.+
T Consensus 98 ~~~~i~~~~~Dvlip~a~~~~i~--------------~~~~~----~l~--a~~I~egAN~~~t-~~a~~~L~~rG---- 152 (227)
T cd01076 98 TNEELLELDCDILIPAALENQIT--------------ADNAD----RIK--AKIIVEAANGPTT-PEADEILHERG---- 152 (227)
T ss_pred CCccceeecccEEEecCccCccC--------------HHHHh----hce--eeEEEeCCCCCCC-HHHHHHHHHCC----
Confidence 112211 3899999998654321 11122 222 3344455444445 55667777764
Q ss_pred eEEeeCCcccc
Q 011650 150 FQILSNPEFLA 160 (480)
Q Consensus 150 ~~v~~~Pe~~~ 160 (480)
+.+.|.++.
T Consensus 153 --i~~~PD~~a 161 (227)
T cd01076 153 --VLVVPDILA 161 (227)
T ss_pred --CEEEChHHh
Confidence 467887753
No 318
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.15 E-value=0.042 Score=51.57 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=29.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.||...+..|.+. |++|++++.+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 4799999999999999999998 89999998653
No 319
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.11 E-value=0.02 Score=58.14 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=33.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|||+|.+|..+|..|++. |+ +++++|.+.-....|++
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~R 66 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQR 66 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccCc
Confidence 4799999999999999999998 87 89999998643333443
No 320
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.085 Score=50.53 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=81.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHH-HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVPRINA-WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+|++||.|+|...++..+...+ +..+++.+-.+...... ++. .+--.+.++ .++++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~------------------~g~~~~~~n-~~~~~~ 61 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA------------------LGVKTVFTN-LEVLQA 61 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc------------------CCceeeech-HHHHhh
Confidence 79999999999999998887761 11234433332111111 221 122233444 677899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-HHHHHHHHhhcCCCceE-EeeCC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEKILMHNSRGINFQ-ILSNP 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~~l~~~~~g~~~~-v~~~P 156 (480)
+|++++||. |. .+.+++.++......+++|+. +--|.+ ..+...+.... .-+. ..-.|
T Consensus 62 s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS---~aaG~tl~~l~~~l~~~~--rviRvmpNtp 121 (267)
T KOG3124|consen 62 SDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS---VAAGKTLSSLESKLSPPT--RVIRVMPNTP 121 (267)
T ss_pred ccceeEeec-ch--------------hHHHHhhcCccccccceEEEE---EeecccHHHHHHhcCCCC--ceEEecCCCh
Confidence 999999996 32 246677777776677777763 222332 33433333111 0111 12355
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
+...+|... +..|+. ...+..+.++++++..+
T Consensus 122 ~~v~eg~sv--------~~~g~~---~~~~D~~l~~~ll~~vG 153 (267)
T KOG3124|consen 122 SVVGEGASV--------YAIGCH---ATNEDLELVEELLSAVG 153 (267)
T ss_pred hhhhcCcEE--------EeeCCC---cchhhHHHHHHHHHhcC
Confidence 666666531 222322 23455678888888765
No 321
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.96 E-value=0.21 Score=50.21 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCCh-hHHHhhhhcccCCCCCCCC
Q 011650 311 VNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIH 388 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~ 388 (480)
++.....+ ..+.+.+|+|+|.. .-+..+++.|...| .+|.++|+-... .++...++
T Consensus 166 v~~a~~~~-~~l~~~~V~ViGaG----------~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g----------- 223 (311)
T cd05213 166 VELAEKIF-GNLKGKKVLVIGAG----------EMGELAAKHLAAKGVAEITIANRTYERAEELAKELG----------- 223 (311)
T ss_pred HHHHHHHh-CCccCCEEEEECcH----------HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC-----------
Confidence 44444333 34688999999963 36778888888876 579999986443 23333332
Q ss_pred CCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC--CCChHHHhhcCcEEEEe
Q 011650 389 LQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLRKIGFIVYSI 465 (480)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~~~g~~y~~i 465 (480)
..+...+++++++..+|+||.+|..+++.++....+.....++.+|+|... -++++-..-.|+.++-|
T Consensus 224 ---------~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~v 293 (311)
T cd05213 224 ---------GNAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTI 293 (311)
T ss_pred ---------CeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEH
Confidence 011122456788899999999999998733222222222224679999874 34544333346666554
No 322
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.93 E-value=0.078 Score=54.18 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=33.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+-.++.+... ...+|++.|++++|++..++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 589999999999876555554 23689999999999998876
No 323
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.93 E-value=0.037 Score=54.71 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=42.2
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|. +|.|+|..|..+ |.+|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12334468999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999999643
No 324
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.92 E-value=0.049 Score=49.02 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=31.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|||.|.+|...+..|.+. |++|++++. +..+++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp--~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP--EICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC--ccCHHHH
Confidence 4799999999999999999998 999999963 3334443
No 325
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.89 E-value=0.05 Score=57.68 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=78.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
.|+|+|+. .....+++.|.++|++|.+||......+...... ..+ ..+..+.+
T Consensus 1 ~IG~IGLG----------~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~---------------~~g--~~~~~~~s 53 (467)
T TIGR00873 1 DIGVIGLA----------VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH---------------AKG--KKIVGAYS 53 (467)
T ss_pred CEEEEeeH----------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc---------------cCC--CCceecCC
Confidence 37888874 4889999999999999999998544322111100 000 11334456
Q ss_pred hhhhc---ccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCCccc
Q 011650 406 AYEAT---KDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPLDKW 472 (480)
Q Consensus 406 ~~~a~---~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~~~~ 472 (480)
+.+.+ +.+|+|++++...+.-+--.+.+...+.+..+|||+.+.... +.+.+.|+.|.+.|.+.-.|
T Consensus 54 ~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 54 IEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred HHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 66644 578999999888543222235666666666699999997743 34456799999988755443
No 326
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.89 E-value=0.043 Score=56.06 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=48.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHHHhcCCCEEEe-cCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEP-GLEEVVKQCRGKNLFFS-TDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~-~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
+||+|+| .|++|..+...|.++ +..+++++..+++...+......++.+. ++..- ...+.+. .++++ +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-----VADMEVVSTDPEA-VDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCccccccccccccccccc-----ccceEEEeCCHHH-hcC
Confidence 6899998 899999999999875 5669999866654433211111111000 00000 0123332 35544 689
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 77 ~DvVf~a~p~ 86 (349)
T PRK08664 77 VDIVFSALPS 86 (349)
T ss_pred CCEEEEeCCh
Confidence 9999999874
No 327
>PLN02256 arogenate dehydrogenase
Probab=95.88 E-value=0.036 Score=55.49 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=74.0
Q ss_pred HHhhHhHHHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhccc
Q 011650 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNK 380 (480)
Q Consensus 301 ~~N~~~~~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~ 380 (480)
.+...||-..-.++.+++. ..+..+|+|+|+.. .+-.+++.|.+.|.+|.+||+.-. .+....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~G~----------mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~---- 77 (304)
T PLN02256 14 AIDAAQPFDYESRLQEELE-KSRKLKIGIVGFGN----------FGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL---- 77 (304)
T ss_pred cccccCCCChHhHHhHhhc-cCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECccH-HHHHHHc----
Confidence 3444455444445555553 33677999999744 677899999999999999998742 2222222
Q ss_pred CCCCCCCCCCCCCCCCcCceEEecChhhhc-ccCcEEEEeecCcccccccHHHH-HhhcCCCCEEEEcCCC
Q 011650 381 FDWDHPIHLQPTSPSTINQVIVASDAYEAT-KDSHGVCILTEWDEFKNLDYQKI-YNNMQKPAFVFDGRNI 449 (480)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~d~~vi~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~~~ 449 (480)
++...++.++.+ .++|+|+++|+...+.++- +++ ...+++..+|+|.-.+
T Consensus 78 ------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl-~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 78 ------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVL-RSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred ------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHH-HhhhhhccCCCCEEEecCCc
Confidence 233456777765 4799999999987655422 233 2334555689999883
No 328
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.86 E-value=0.049 Score=50.42 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=58.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cC----HHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TD----VEK 74 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d----~~~ 74 (480)
++|+|||- ..+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-+.| .+ +.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 47999995 67899999999988 89999999764322 111100 0 00111 12 556
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
.++.||+||.+++.|-.. .. ...+++|++||+.++.
T Consensus 123 ~~~~ADIVIsAvG~~~~~--------i~-----------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 123 CLSQSDVVITGVPSPNYK--------VP-----------TELLKDGAICINFASI 158 (197)
T ss_pred HhhhCCEEEEccCCCCCc--------cC-----------HHHcCCCcEEEEcCCC
Confidence 689999999999876210 01 2457889999985543
No 329
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.85 E-value=0.05 Score=43.52 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++++|+|.|.+|.+++..+.+.+ +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 47999999999999999999862 457777765
No 330
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.084 Score=56.24 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA 41 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
+||.|+|+|..|.++|..|.++ |++|+++|++.....+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARHK 53 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHHH
Confidence 5799999999999999999998 9999999987655443
No 331
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.80 E-value=0.012 Score=55.70 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=44.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
.+|+|||+|.+|..++..+.....|+++++ +|.++++......+ .+ +...+++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999886432224788776 78887655321111 11 111234555444 4
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999885
No 332
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.80 E-value=0.077 Score=54.01 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=61.9
Q ss_pred ceEEEECCChhHHHHHHHHHHc--------CCCCeEE-EEeCC----------HHHHHHHHcCCCCCCCCChHHHHHHhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDIS----------VPRINAWNSDQLPIYEPGLEEVVKQCR 62 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~----------~~~v~~l~~g~~~~~e~~l~~~~~~~~ 62 (480)
+||+|+|+|.||..++..|.++ +.+.+|+ ++|++ .+++..+.+....+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~--~-------- 72 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD--Y-------- 72 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc--C--------
Confidence 5899999999999999988754 1135655 45643 3333333221100000 0
Q ss_pred CCCEEEecCHHHHh--hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc-HHHHHH
Q 011650 63 GKNLFFSTDVEKHV--REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT-AEAIEK 139 (480)
Q Consensus 63 ~~~l~~t~d~~~a~--~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~ 139 (480)
.....++|+++.+ .+.|+|+.|+|+..+. . +.+.+-+...+..|.-|+..++-|... .+++.+
T Consensus 73 -~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~------~-------~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~ 138 (341)
T PRK06270 73 -PEGGGEISGLEVIRSVDADVVVEATPTNIET------G-------EPALSHCRKALERGKHVVTSNKGPLALAYKELKE 138 (341)
T ss_pred -ccccccCCHHHHhhccCCCEEEECCcCcccc------c-------chHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHH
Confidence 0011245777766 3689999998864321 0 112233344455677776543333322 344544
Q ss_pred HHHh
Q 011650 140 ILMH 143 (480)
Q Consensus 140 ~l~~ 143 (480)
..++
T Consensus 139 ~A~~ 142 (341)
T PRK06270 139 LAKK 142 (341)
T ss_pred HHHH
Confidence 4443
No 333
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.80 E-value=0.13 Score=54.73 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|..|..+|..|+++ |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999988 99999999654
No 334
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.78 E-value=0.036 Score=55.89 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=53.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|.+|...+..+... ++.+|++ .|.+++....+... +.+.+. ............++....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 69999999999999998764 5778775 57777754444331 111111 00000000112346677789998899999
Q ss_pred EEEEccCCC
Q 011650 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999987643
No 335
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.77 E-value=0.068 Score=47.08 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=47.0
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|+| ...+|.++|..|.++ |..|+.++.+ |.++++.++.||+
T Consensus 30 ~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~ADI 74 (140)
T cd05212 30 KVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDADV 74 (140)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCCE
Confidence 567776 356777777777766 6777766642 1256667899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
|+.+++.+.. .+ .+.+++|++|++-
T Consensus 75 VvsAtg~~~~---------i~-----------~~~ikpGa~Vidv 99 (140)
T cd05212 75 VVVGSPKPEK---------VP-----------TEWIKPGATVINC 99 (140)
T ss_pred EEEecCCCCc---------cC-----------HHHcCCCCEEEEc
Confidence 9999986521 11 2457899998853
No 336
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.77 E-value=0.075 Score=47.88 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCC
Q 011650 308 TRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++.+ +..+-++++++|.|+|-+- .-..+|+..|.++|+.|.+.+-.-
T Consensus 21 ~aii~lL-~~~~~~l~Gk~v~VvGrs~---------~VG~Pla~lL~~~~atVt~~h~~T-------------------- 70 (160)
T PF02882_consen 21 LAIIELL-EYYGIDLEGKKVVVVGRSN---------IVGKPLAMLLLNKGATVTICHSKT-------------------- 70 (160)
T ss_dssp HHHHHHH-HHTT-STTT-EEEEE-TTT---------TTHHHHHHHHHHTT-EEEEE-TTS--------------------
T ss_pred HHHHHHH-HhcCCCCCCCEEEEECCcC---------CCChHHHHHHHhCCCeEEeccCCC--------------------
Confidence 3344433 3344578999999999543 467889999999999999977653
Q ss_pred CCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
.++++.++.||.||.++..+.|-.-+ ..++.++|||..--+.
T Consensus 71 ----------------~~l~~~~~~ADIVVsa~G~~~~i~~~------~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 ----------------KNLQEITRRADIVVSAVGKPNLIKAD------WIKPGAVVIDVGINYV 112 (160)
T ss_dssp ----------------SSHHHHHTTSSEEEE-SSSTT-B-GG------GS-TTEEEEE--CEEE
T ss_pred ----------------CcccceeeeccEEeeeeccccccccc------cccCCcEEEecCCccc
Confidence 24566789999999999999985433 2345569999865433
No 337
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.75 E-value=0.02 Score=52.19 Aligned_cols=69 Identities=20% Similarity=0.486 Sum_probs=45.2
Q ss_pred CceEEEECCChhHHHHHHH-HHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGPTMAV-IALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~-La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|-++.+||+|++|.+++.. +.++ .|++++ +||++++.+-.-..+ .++++ -++++.-++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~-~~~~iv~~FDv~~~~VG~~~~~-v~V~~-----------------~d~le~~v~~ 144 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKK-NGMKIVAAFDVDPDKVGTKIGD-VPVYD-----------------LDDLEKFVKK 144 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhh-cCceEEEEecCCHHHhCcccCC-eeeec-----------------hHHHHHHHHh
Confidence 3579999999999998853 4433 266654 699999876433322 33321 123344344
Q ss_pred -cCCEEEEEccC
Q 011650 78 -EANIVFVSVNT 88 (480)
Q Consensus 78 -~aDvVii~Vpt 88 (480)
+.|+.|+|||.
T Consensus 145 ~dv~iaiLtVPa 156 (211)
T COG2344 145 NDVEIAILTVPA 156 (211)
T ss_pred cCccEEEEEccH
Confidence 78999999984
No 338
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.73 E-value=0.062 Score=57.01 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecCHHHHhh
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (480)
++|.|||+|..|.+ +|..|.++ |++|+++|.+.. ..+.+.+. ++.+ ..+. +.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~-~~~~ 65 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDA-ENIK 65 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCH-HHCC
Confidence 57999999999999 78889888 999999998653 22233321 1222 1222 3366
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|.+ .+ .++.+.+ ++ ...+++..+|.++.|..-+||.. +..+|+..+
T Consensus 66 ~~d~vv~spgi~~~--------~~---~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 66 DADVVVYSSAIPDD--------NP---ELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCEEEECCCCCCC--------CH---HHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 89988876433321 22 2222211 12 22333346777777776555544 677777654
No 339
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.68 E-value=0.093 Score=49.38 Aligned_cols=65 Identities=11% Similarity=0.208 Sum_probs=45.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec---CHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST---DVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~~ 77 (480)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .+..+.+. +++++.. ... .+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~-dl~ 68 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDAD-ILE 68 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHH-HhC
Confidence 4799999999999999999998 899999987643 33333321 2233211 222 378
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++++||.|++
T Consensus 69 ~~~lVi~at~ 78 (205)
T TIGR01470 69 GAFLVIAATD 78 (205)
T ss_pred CcEEEEECCC
Confidence 8999998864
No 340
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.053 Score=53.39 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=54.4
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+. +|.|+|..|..+ |..|++++.. |.|+.+..++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998731 235566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++.-|.. +. ...+++|++||+.+
T Consensus 210 Ivv~AvG~p~~--------------i~------~~~vk~gavVIDvG 236 (287)
T PRK14176 210 ILVVATGVKHL--------------IK------ADMVKEGAVIFDVG 236 (287)
T ss_pred EEEEccCCccc--------------cC------HHHcCCCcEEEEec
Confidence 99999876521 10 13678899998744
No 341
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.63 E-value=0.16 Score=45.76 Aligned_cols=126 Identities=16% Similarity=0.286 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCC
Q 011650 311 VNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQ 390 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
++-|.+..+..+.++++.|+|... -.-.+++.|...|+.|.++|--- .-.++.
T Consensus 10 ~d~i~r~t~~~l~Gk~vvV~GYG~----------vG~g~A~~lr~~Ga~V~V~e~DP-i~alqA---------------- 62 (162)
T PF00670_consen 10 VDGIMRATNLMLAGKRVVVIGYGK----------VGKGIARALRGLGARVTVTEIDP-IRALQA---------------- 62 (162)
T ss_dssp HHHHHHHH-S--TTSEEEEE--SH----------HHHHHHHHHHHTT-EEEEE-SSH-HHHHHH----------------
T ss_pred HHHHHhcCceeeCCCEEEEeCCCc----------ccHHHHHHHhhCCCEEEEEECCh-HHHHHh----------------
Confidence 344454445567899999999755 78899999999999999997421 111111
Q ss_pred CCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEEecC
Q 011650 391 PTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYSIGK 467 (480)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG~ 467 (480)
.++++++. +++++++.+|.+|-.|..+.. ++.+. ...|++.+++.+.-.. ++-+.+++.+..-..+..
T Consensus 63 -----~~dGf~v~-~~~~a~~~adi~vtaTG~~~v--i~~e~-~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~ 133 (162)
T PF00670_consen 63 -----AMDGFEVM-TLEEALRDADIFVTATGNKDV--ITGEH-FRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRP 133 (162)
T ss_dssp -----HHTT-EEE--HHHHTTT-SEEEE-SSSSSS--B-HHH-HHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEET
T ss_pred -----hhcCcEec-CHHHHHhhCCEEEECCCCccc--cCHHH-HHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCC
Confidence 12445554 689999999999999999764 23333 4567777666665433 233455556666666655
Q ss_pred CCccc
Q 011650 468 PLDKW 472 (480)
Q Consensus 468 ~~~~~ 472 (480)
....|
T Consensus 134 ~v~~y 138 (162)
T PF00670_consen 134 QVDRY 138 (162)
T ss_dssp TEEEE
T ss_pred CeeEE
Confidence 44443
No 342
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.63 E-value=0.062 Score=56.82 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhccc---CcEEEEeecCc
Q 011650 347 IDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKD---SHGVCILTEWD 423 (480)
Q Consensus 347 ~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~d~~vi~~~~~ 423 (480)
..+++.|.++|++|.+||--....+..... .+.-.+++.++|+.+.++. +|+|+++....
T Consensus 3 ~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~-----------------~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g 65 (459)
T PRK09287 3 KNLALNIASHGYTVAVYNRTPEKTDEFLAE-----------------EGKGKKIVPAYTLEEFVASLEKPRKILLMVKAG 65 (459)
T ss_pred HHHHHHHHhCCCeEEEECCCHHHHHHHHHh-----------------hCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCc
Confidence 468899999999999999865443221110 0001246678899998875 89999999887
Q ss_pred ccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCCcc
Q 011650 424 EFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPLDK 471 (480)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~~~ 471 (480)
+--+--++.+...+.+..+|||+.|...+ +.+++.|+.|.+.|.++-.
T Consensus 66 ~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 66 APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 54332335667777766699999998754 3455679999999875543
No 343
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.63 E-value=0.078 Score=52.62 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=60.4
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|=+. ....+++..|.++|+.|.+++..-
T Consensus 152 ~~i~~~Gk~V~viGrs~---------~mG~PmA~~L~~~g~tVtv~~~rT------------------------------ 192 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSN---------LVGKPMAQLLLAANATVTIAHSRT------------------------------ 192 (296)
T ss_pred hCCCCCCCEEEEEcCCc---------chHHHHHHHHHhCCCEEEEECCCC------------------------------
Confidence 34467999999999432 578899999999999999986321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
.++.++++.||+||.++..+.+-.-+| +++..+|||.--
T Consensus 193 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------lk~GavVIDvGi 231 (296)
T PRK14188 193 ------RDLPAVCRRADILVAAVGRPEMVKGDW------IKPGATVIDVGI 231 (296)
T ss_pred ------CCHHHHHhcCCEEEEecCChhhcchhe------ecCCCEEEEcCC
Confidence 135677889999999999998644322 455568888753
No 344
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.63 E-value=0.022 Score=53.46 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=32.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.-..+.++
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchh
Confidence 3799999999999999999998 75 8999998854333344
No 345
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.63 E-value=0.023 Score=44.71 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||.|++|.-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998753
No 346
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.62 E-value=0.1 Score=52.65 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|-+|. +|..+|++. |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999998887 455666632 8999999999999887765
No 347
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.062 Score=52.78 Aligned_cols=71 Identities=31% Similarity=0.588 Sum_probs=53.6
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+ .+|.|+|..|.++ |..|+.+.. .|.++.+.++.||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs---------------------------------~T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHI---------------------------------FTKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCC---------------------------------CCcCHHHHHhhCC
Confidence 479999987 9999999999988 889987642 1234556689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-.- . ..++++|++||+.+
T Consensus 203 IvV~AvGkp~~i---------~-----------~~~vk~gavvIDvG 229 (281)
T PRK14183 203 IVIVGVGKPNLI---------T-----------EDMVKEGAIVIDIG 229 (281)
T ss_pred EEEEecCccccc---------C-----------HHHcCCCcEEEEee
Confidence 999999865211 1 24578899998744
No 348
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.56 E-value=0.064 Score=52.80 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=53.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|++++.. |.++++.++.||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 588999999999988 8899988631 235566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-- .+ ..++++|++||+.+
T Consensus 204 IvI~AvG~p~~---------i~-----------~~~ik~gavVIDvG 230 (284)
T PRK14190 204 ILIVAVGKPKL---------IT-----------ADMVKEGAVVIDVG 230 (284)
T ss_pred EEEEecCCCCc---------CC-----------HHHcCCCCEEEEee
Confidence 99999986621 11 23568899998743
No 349
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.54 E-value=0.048 Score=55.30 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=41.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||||+|+|+ |++|.-+...|.++ .|..++..+.-. +.. |+ ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 468999996 99999999999975 133344455332 211 21 111111 1133322 2233 68
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 66 ~vD~vFla~p~ 76 (336)
T PRK05671 66 QVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEcCCH
Confidence 99999999874
No 350
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.52 E-value=0.039 Score=57.95 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=45.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcC------C--CCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC------P--SIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~------~--G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
+||+|+|+|.||..++..|.++. . +.+|. ++|++.++...+. . ....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~--------------~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L--------------PGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C--------------cccceeCCH
Confidence 58999999999999998876531 1 23443 5688866532110 0 123467888
Q ss_pred HHHhh--cCCEEEEEccC
Q 011650 73 EKHVR--EANIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~--~aDvVii~Vpt 88 (480)
++.+. +.|+|++|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88775 57999999864
No 351
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.51 E-value=0.056 Score=53.63 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcc
Q 011650 345 PAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
....+++.|.+.|.+|.+||+.....+.... .+....+++.++++++|+|+++++.+.
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------AGAQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEeCCChH
Confidence 5678999999999999999986543222111 124456788999999999999999844
Q ss_pred -ccccc--HHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011650 425 -FKNLD--YQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYS 464 (480)
Q Consensus 425 -~~~~~--~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
++++- .+.+...+++..+|+|+..+-.. +.+++.|+.|..
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 34321 13455556666799999976653 244456888865
No 352
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.15 Score=54.02 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=33.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+||.|||+|..|.+.|..|.+. |++|+++|........+.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l~ 49 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKAA 49 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHHH
Confidence 4799999999999998888888 999999998755444343
No 353
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.50 E-value=0.024 Score=53.71 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=32.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|||+|.+|..+|..|++. |. +++++|.+.-....+++
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~R 70 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLNR 70 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEeccccccc
Confidence 3799999999999999999998 65 59999998533344443
No 354
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.47 E-value=0.049 Score=54.53 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++||+||| .||+|.-+...|..+ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 46899999 699999999999886 44454444
No 355
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=0.1 Score=54.69 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=32.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|||+|+|+|.-|.++|..|.+. |++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc
Confidence 47999999999999999999998 9999999977654
No 356
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.45 E-value=0.019 Score=59.74 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||.|.+|+.+|..|++. |++|+++|+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999864
No 357
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.43 E-value=0.051 Score=48.79 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=62.7
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|- .+-+..++..|..+|.+|..|.+.-.. . ..+...+. . ....+ .....+.+...++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~--~-~~i~~~~~-n---~~~~~-~~~l~~~i~~t~d 62 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQ--I-EEINETRQ-N---PKYLP-GIKLPENIKATTD 62 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHH--H-HHHHHHTS-E---TTTST-TSBEETTEEEESS
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHH--H-HHHHHhCC-C---CCCCC-CcccCcccccccC
Confidence 6888885 467889999999999999999995422 1 12211110 0 00001 1122356778899
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCC-EEEEcCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPA-FVFDGRNI 449 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~-~i~D~~~~ 449 (480)
++++++++|.+++.++-..+++ -.+++....+... +|+=++++
T Consensus 63 l~~a~~~ad~IiiavPs~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 63 LEEALEDADIIIIAVPSQAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHHTT-SEEEE-S-GGGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHhCcccEEEecccHHHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999887765 2345544443332 44434444
No 358
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.2 Score=52.86 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|+|+|..|.++|..|.+. |++|+++|..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCC
Confidence 489999999999999999888 99999999764
No 359
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.37 E-value=0.043 Score=54.31 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=50.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe---cCHHHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS---TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~~ 78 (480)
++.|||+|-+|.+++..|++. |. +|++++|+.++.+++.+..... ..+... .+..+.+.+
T Consensus 127 ~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~~--------------~~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQV--------------GVITRLEGDSGGLAIEKA 190 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhhc--------------CcceeccchhhhhhcccC
Confidence 689999999999999999988 65 7999999999998886521000 011111 222344578
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||-|+|..
T Consensus 191 ~DiVInaTp~g 201 (282)
T TIGR01809 191 AEVLVSTVPAD 201 (282)
T ss_pred CCEEEECCCCC
Confidence 99999998753
No 360
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.37 E-value=0.077 Score=52.31 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=53.8
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.|+++..++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899977531 345666689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|--- + ..++++|++||+..
T Consensus 201 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDVG 227 (287)
T PRK14173 201 VLVVAVGRPHLI---------T-----------PEMVRPGAVVVDVG 227 (287)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999866211 1 24678999998743
No 361
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.37 E-value=0.12 Score=50.51 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=66.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----eEEEE-CCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA----RLSIY-DPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|+ ...+..+++.|.+.|. +|.+| |+.-...+.... .++
T Consensus 2 kI~~IG~----------G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----------------------~g~ 49 (266)
T PLN02688 2 RVGFIGA----------GKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS----------------------LGV 49 (266)
T ss_pred eEEEECC----------cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------cCC
Confidence 6888886 3578889999999998 89999 774332221111 235
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
...++..++++++|+|+++++-..+++. +..+...+.+..+|+..-+-.+.+.+.+
T Consensus 50 ~~~~~~~e~~~~aDvVil~v~~~~~~~v-l~~l~~~~~~~~~iIs~~~g~~~~~l~~ 105 (266)
T PLN02688 50 KTAASNTEVVKSSDVIILAVKPQVVKDV-LTELRPLLSKDKLLVSVAAGITLADLQE 105 (266)
T ss_pred EEeCChHHHHhcCCEEEEEECcHHHHHH-HHHHHhhcCCCCEEEEecCCCcHHHHHH
Confidence 5677888888999999999975544442 2344444455557787756566666653
No 362
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.34 E-value=0.021 Score=59.39 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|+|||.|.+|+++|..|+++ |++|+++|.++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 6999999999999999999998 999999999753
No 363
>PRK01581 speE spermidine synthase; Validated
Probab=95.34 E-value=1 Score=46.06 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCC-CCCCChHHHHHHhcCCCEEE-ecCHHHHh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLP-IYEPGLEEVVKQCRGKNLFF-STDVEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~-~~e~~l~~~~~~~~~~~l~~-t~d~~~a~-- 76 (480)
.+|.|||+|. |..+.. +.+..+.-+|+++|+|++.++..++- ..+ +....+ ...++++ ..|..+-+
T Consensus 152 krVLIIGgGd-G~tlre-lLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-------~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGGD-GLALRE-VLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-------FDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCCH-HHHHHH-HHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-------CCCceEEEECcHHHHHHh
Confidence 4799999985 444444 44442236899999999998877741 000 000000 1134433 34444333
Q ss_pred --hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH---HHHHHHhhcCCCceE
Q 011650 77 --REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA---IEKILMHNSRGINFQ 151 (480)
Q Consensus 77 --~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~---l~~~l~~~~~g~~~~ 151 (480)
...|+||+-+|.|... ...--+-.+.++.+...|+++.+++..++.+...... +...+++.......+
T Consensus 223 ~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 2469999998765421 1111223567788899999999887766555333222 334455543222233
Q ss_pred EeeCCcc
Q 011650 152 ILSNPEF 158 (480)
Q Consensus 152 v~~~Pe~ 158 (480)
..+-|.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 4456665
No 364
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.21 Score=52.89 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=29.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||.|||+|..|.+.|..|+++ |++|.++|.++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 799999999999998888888 99999999865
No 365
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.32 E-value=0.12 Score=54.48 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=69.3
Q ss_pred HHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEEC--CCCChhHHHhhhhcccCCCCCCCCC
Q 011650 312 NRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYD--PQVPQEHIQRDLQMNKFDWDHPIHL 389 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+.+++..+..+.+++|+|+|... -...+++.|...|++|.+|| |....+. ..
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~----------IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A--~~-------------- 295 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD----------VGKGCAQALRGFGARVVVTEIDPICALQA--AM-------------- 295 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCchhHHHH--Hh--------------
Confidence 33444444578999999999743 78889999999999999994 4432111 11
Q ss_pred CCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 390 QPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
.++.+ .+++++++.+|+|+++|..+.+ ++. +..+.|++.+++++.-+.
T Consensus 296 --------~G~~~-~~leell~~ADIVI~atGt~~i--I~~-e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 296 --------EGYQV-VTLEDVVETADIFVTATGNKDI--ITL-EHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --------cCcee-ccHHHHHhcCCEEEECCCcccc--cCH-HHHhccCCCcEEEEcCCC
Confidence 12222 3678899999999999876543 343 445778888888888554
No 366
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.30 E-value=0.22 Score=47.80 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=33.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|..+|..|++. |. +++++|.+.-....+++
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnR 53 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNR 53 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcc
Confidence 3799999999999999999998 65 89999987655555554
No 367
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.28 E-value=0.086 Score=53.67 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEE-eCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVV-DIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~-D~~ 35 (480)
|||+|+|+ |++|..++..|..+ +.+++..+ +.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEECh
Confidence 69999995 99999999988876 35788877 544
No 368
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.25 E-value=0.27 Score=51.84 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=30.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+++|.|||+|..|.+.++.|.+.+.|++|+++|.++
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 467999999999999999988764238999999764
No 369
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.23 E-value=0.091 Score=51.68 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=53.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.|+++..++||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899877421 345666689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|--- + ..++++|++||+.+
T Consensus 202 IvI~AvG~p~~i---------~-----------~~~vk~GavVIDvG 228 (282)
T PRK14169 202 ILVVAVGVPHFI---------G-----------ADAVKPGAVVIDVG 228 (282)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCcEEEEee
Confidence 999999865211 1 24678999998743
No 370
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.22 E-value=0.099 Score=54.64 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=68.1
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC-------CcC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS-------TIN 398 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 398 (480)
+|+|+|+.| ..+.++..|.+.|.+|.+||+.-..-+ .+... .-|+ .+..-. ...
T Consensus 2 kI~vIGlG~----------~G~~lA~~La~~G~~V~~~d~~~~~v~---~l~~g----~~~~--~e~~l~~~~~~~~~~g 62 (411)
T TIGR03026 2 KIAVIGLGY----------VGLPLAALLADLGHEVTGVDIDQEKVD---KLNKG----KSPI--YEPGLDELLAKALAAG 62 (411)
T ss_pred EEEEECCCc----------hhHHHHHHHHhcCCeEEEEECCHHHHH---HhhcC----CCCC--CCCCHHHHHHHhhhcC
Confidence 699999987 899999999999999999998543321 12100 0010 000000 012
Q ss_pred ceEEecChhhhcccCcEEEEeecCcccc--ccc-------HHHHHhhcCCCCEEEEcCCCC
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFK--NLD-------YQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~--~~~-------~~~~~~~~~~~~~i~D~~~~~ 450 (480)
.++..+++.++++++|+++++++.+.-. ++| .+.+...+++..+|+|...+.
T Consensus 63 ~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 63 RLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred CeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 2667788888999999999999987421 122 234555566667899977554
No 371
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.094 Score=51.60 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=53.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||- ..+|.|+|..|.++ |..|+.+... |.|+++.++.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67999999999988 8899987531 345666689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-. +. ..++++|++||+.+
T Consensus 203 IvI~AvG~~~~--------------i~------~~~vk~GavVIDvG 229 (284)
T PRK14170 203 ILVVATGLAKF--------------VK------KDYIKPGAIVIDVG 229 (284)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999986521 11 24678899998743
No 372
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.19 E-value=0.22 Score=53.47 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|+|+|..|.++|..|.++ |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999988 99999999754
No 373
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.19 E-value=0.095 Score=52.87 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++|+|+|+ .+.+..++..|...|.+|.++++.-... ..... .+
T Consensus 14 ~L~gktIgIIG~----------GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~----------------------~G 61 (330)
T PRK05479 14 LIKGKKVAIIGY----------GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA----------------------DG 61 (330)
T ss_pred hhCCCEEEEEee----------HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH----------------------CC
Confidence 357899999997 4689999999999999999987653322 11111 12
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
+... +..++++.+|+|+++++-....++-.+.+...+++..+|+=+.+
T Consensus 62 ~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G 109 (330)
T PRK05479 62 FEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHG 109 (330)
T ss_pred CeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 3333 78899999999999999766554332567667765545544433
No 374
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.19 E-value=0.052 Score=55.00 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=54.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH-Hhhc
Q 011650 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK-HVRE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
|||+|||. |++|.-+...|+.+ .|..++..+.-+.+ .|. ++...+ ..+.+. ++++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 68999996 99999999999974 35667777643311 121 111111 124443 3333 2378
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhC-CCCcEEEEec
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS-KSDKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~S 127 (480)
+|++|+|+|.. +...+.+.+ ..|..||+.|
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECC
Confidence 99999998742 233344433 4688888876
No 375
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.17 E-value=0.095 Score=51.94 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=53.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.+... |.++++.++.||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899887421 335666688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-. .+ ..++++|++||+.+
T Consensus 204 IvIsAvGkp~~---------i~-----------~~~ik~gavVIDvG 230 (297)
T PRK14186 204 ILVAAAGRPNL---------IG-----------AEMVKPGAVVVDVG 230 (297)
T ss_pred EEEEccCCcCc---------cC-----------HHHcCCCCEEEEec
Confidence 99999986521 11 24678999998743
No 376
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.16 E-value=0.08 Score=52.76 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
-||+|+| .||.|.-+...|+.+ |..++..+.-+.. + . ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~-----------~-----------------~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR-----------K-----------------D-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc-----------c-----------------C-cCCHhHhhcCCC
Confidence 4899998 599999999999986 5666655532211 0 0 013344457899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999974
No 377
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.16 E-value=0.052 Score=51.72 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+|. |.+|.+++..|.+. +++|.++-|++ +..+.+......+-+.+. .-..++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~------------~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEADY------------DDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-T------------T-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeeccc------------CCHHHHHHHHcCCc
Confidence 789996 99999999999997 99999999986 345566543221111111 01134456789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
No 378
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.15 E-value=0.064 Score=52.95 Aligned_cols=93 Identities=15% Similarity=0.011 Sum_probs=62.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. ..+..++..|.++|.+|.+||+.-...+.....+ .+....+
T Consensus 2 ~I~IIG~G----------~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g---------------------~~~~~~~ 50 (279)
T PRK07417 2 KIGIVGLG----------LIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG---------------------LVDEAST 50 (279)
T ss_pred eEEEEeec----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC---------------------CcccccC
Confidence 68999864 3778899999999999999998533221111111 0111223
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
..++++++|.||++++-+...+. .+++...+++..+|.|...+-
T Consensus 51 ~~~~~~~aDlVilavp~~~~~~~-~~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 51 DLSLLKDCDLVILALPIGLLLPP-SEQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred CHhHhcCCCEEEEcCCHHHHHHH-HHHHHHhCCCCcEEEeCcchH
Confidence 34568899999999997765442 456666666667888877653
No 379
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.15 E-value=0.047 Score=44.71 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=45.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE-- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
.+|+|+|+|..|..++..+.+. .|+. +.++|.+++++.+-- .++.+..+++++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~-~g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM-RGFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-HCECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHH-cCCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 3799999999999988655543 2665 557899987543111 245566666665554
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|+-++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999984
No 380
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.13 E-value=0.06 Score=54.82 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=40.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~ 76 (480)
+||+|+| .|++|.-+...|+++ +| ++..+..... .|. ++.+.+ ..+.+.. +. +.+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~--~hP~~~l~~las~rs------aGk-~~~~~~----------~~~~v~~~~~-~~~ 67 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR--DFPYSSLKMLASARS------AGK-KVTFEG----------RDYTVEELTE-DSF 67 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC--CCCcceEEEEEccCC------CCC-eeeecC----------ceeEEEeCCH-HHH
Confidence 6899999 599999999999986 55 4444432211 011 111111 1123322 33 346
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|+|+|.
T Consensus 68 ~~~D~vf~a~p~ 79 (344)
T PLN02383 68 DGVDIALFSAGG 79 (344)
T ss_pred cCCCEEEECCCc
Confidence 899999999975
No 381
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.11 E-value=0.16 Score=50.16 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|-+. .-..+|+..|.++|+.|.+.+-.
T Consensus 152 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVt~~hs~------------------------------- 191 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSN---------IVGKPMAMLLLQAGATVTICHSK------------------------------- 191 (285)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEecCC-------------------------------
Confidence 34467899999999654 45789999999999999984321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
..++.+.++.||.||.++..+.| ++. +.+++.++|||.-
T Consensus 192 -----t~~l~~~~~~ADIVV~avG~~~~--i~~----~~ik~gavVIDVG 230 (285)
T PRK14189 192 -----TRDLAAHTRQADIVVAAVGKRNV--LTA----DMVKPGATVIDVG 230 (285)
T ss_pred -----CCCHHHHhhhCCEEEEcCCCcCc--cCH----HHcCCCCEEEEcc
Confidence 12566778999999999999987 443 3455567999975
No 382
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.11 E-value=0.18 Score=49.72 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=61.0
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-++++++|.|+|=|- .-..+++..|.++|+.|.+..-.-
T Consensus 148 ~~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVtichs~T----------------------------- 189 (287)
T PRK14173 148 HYGIPLAGKEVVVVGRSN---------IVGKPLAALLLREDATVTLAHSKT----------------------------- 189 (287)
T ss_pred HcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344567999999999543 577899999999999999865422
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 190 -------~~l~~~~~~ADIvIsAvGkp~~i~--~~~v----k~GavVIDVG 227 (287)
T PRK14173 190 -------QDLPAVTRRADVLVVAVGRPHLIT--PEMV----RPGAVVVDVG 227 (287)
T ss_pred -------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEcc
Confidence 245677899999999999999854 3333 4456999975
No 383
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.11 E-value=0.28 Score=51.71 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (480)
++|.|+|.|..|.+.|..|+++ |++|+++|.++.. .+++.+- ..++++ .........
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~~~~~~~l~~~-----------------~~gi~~~~g~~~~~~~~ 66 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELKPERVAQIGKM-----------------FDGLVFYTGRLKDALDN 66 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCchhHHHHhhc-----------------cCCcEEEeCCCCHHHHh
Confidence 4799999999999999999988 9999999976532 2233220 001222 111222246
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhCC--CCcEEEEecCCCcccHHH-HHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVSK--SDKIVVEKSTVPVKTAEA-IEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~--~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
++|+||.+..-|.+ .|.+ +.+.+ -+...++ +..+|.+..|..-+||.. +..+|+..
T Consensus 67 ~~d~vv~spgi~~~--------~p~~---~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 67 GFDILALSPGISER--------QPDI---EAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCEEEECCCCCCC--------CHHH---HHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 89999887544321 2333 33221 1123332 246777777775555544 56777664
Q ss_pred c
Q 011650 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 136 g 136 (445)
T PRK04308 136 G 136 (445)
T ss_pred C
Confidence 3
No 384
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.09 E-value=0.27 Score=51.60 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=71.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-e----------CCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEe
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-D----------ISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D----------~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
++|+|.|.|++|..+|..|.+. |.+|+++ | +|.+.+.+.++.. ..+ ..+-.. .+.++.
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l-----~~~~~~---~~~~~i 302 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRI-----SEYAEE---FGAEYL 302 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCch-----hhhhhh---cCCeec
Confidence 5899999999999999999998 9999988 8 7777666655421 011 111000 012222
Q ss_pred cCHHHHh-hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCC
Q 011650 70 TDVEKHV-REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGI 148 (480)
Q Consensus 70 ~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~ 148 (480)
++ ++.+ .+||+++-|-.+..- + .+....+.+ .+.-+|.+.-.-|-| .+-.++|.+.+
T Consensus 303 ~~-~~i~~~d~DVliPaAl~n~I----------t----~~~a~~i~~---~~akiIvEgAN~p~t-~~A~~~L~~rG--- 360 (445)
T PRK09414 303 EG-GSPWSVPCDIALPCATQNEL----------D----EEDAKTLIA---NGVKAVAEGANMPST-PEAIEVFLEAG--- 360 (445)
T ss_pred CC-ccccccCCcEEEecCCcCcC----------C----HHHHHHHHH---cCCeEEEcCCCCCCC-HHHHHHHHHCC---
Confidence 22 2222 489999999764321 2 122233321 133344555554444 44556777654
Q ss_pred ceEEeeCCcccc
Q 011650 149 NFQILSNPEFLA 160 (480)
Q Consensus 149 ~~~v~~~Pe~~~ 160 (480)
+.+.|..+.
T Consensus 361 ---I~~vPD~la 369 (445)
T PRK09414 361 ---VLFAPGKAA 369 (445)
T ss_pred ---cEEECchhh
Confidence 456787653
No 385
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.08 E-value=0.11 Score=51.08 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=54.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.++.. |.|+++..+.||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899988631 335566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|-- + . ..++++|++||+.++
T Consensus 205 IvIsAvGk~~~--------------i----~--~~~ik~gavVIDvGi 232 (284)
T PRK14177 205 IIVGAVGKPEF--------------I----K--ADWISEGAVLLDAGY 232 (284)
T ss_pred EEEEeCCCcCc--------------c----C--HHHcCCCCEEEEecC
Confidence 99999986521 1 1 246789999997554
No 386
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.07 E-value=0.11 Score=44.14 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=59.5
Q ss_pred ceEEEEC----CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+||| -+..|.-+...|.++ |++|+.++.....+ .+.....++++.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 789999999999997 99999987653211 24566777776227
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+..++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 89999999873 2345666666554 3345555433 3345566666654
No 387
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.05 E-value=0.11 Score=51.71 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=76.4
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++.++.|++++|+|+.= -.-+++..+..-|..|..|||+.+.+... .+
T Consensus 140 ~G~el~GKTLgvlG~Gr----------IGseVA~r~k~~gm~vI~~dpi~~~~~~~-a~--------------------- 187 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGR----------IGSEVAVRAKAMGMHVIGYDPITPMALAE-AF--------------------- 187 (406)
T ss_pred eeeEEeccEEEEeeccc----------chHHHHHHHHhcCceEEeecCCCchHHHH-hc---------------------
Confidence 34567899999999742 45678888899999999999999876543 23
Q ss_pred CceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
++.+. +++|.+..||-+.++++- |+-+++--++-...|++...||.+.+ ++|..
T Consensus 188 -gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 188 -GVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred -cceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 34443 789999999999999887 66666433455677888778888754 66654
No 388
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.01 E-value=0.11 Score=51.51 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=53.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||- ..+|.|+|..|.++ |..|+.++.. |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999994 67999999999988 8899988531 235666789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|..- . ...+++|++||+.+
T Consensus 213 Ivv~AvGk~~~i---------~-----------~~~vk~gavVIDvG 239 (299)
T PLN02516 213 IVIAAAGQAMMI---------K-----------GDWIKPGAAVIDVG 239 (299)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999865211 1 24678999998744
No 389
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.4 Score=50.49 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|+|.+|.++|..|++. |++|++.|.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 3689999999999999999998 99999999865
No 390
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.99 E-value=0.082 Score=43.86 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 4799999999999999999998 89999999875
No 391
>PRK05868 hypothetical protein; Validated
Probab=94.99 E-value=0.026 Score=58.16 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=32.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999998 999999998764
No 392
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.97 E-value=0.19 Score=45.78 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+..++++++|+|+|..- .-...+++.|.++|++|.+.+...
T Consensus 36 ~~~~~~l~gk~vlViG~G~---------~~G~~~a~~L~~~g~~V~v~~r~~---------------------------- 78 (168)
T cd01080 36 KRYGIDLAGKKVVVVGRSN---------IVGKPLAALLLNRNATVTVCHSKT---------------------------- 78 (168)
T ss_pred HHcCCCCCCCEEEEECCcH---------HHHHHHHHHHhhCCCEEEEEECCc----------------------------
Confidence 3344578999999999632 246779999999999998877532
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
+++.+.+.+||+||.+|.=+.+ ++.+.+ +...+|||.-.
T Consensus 79 --------~~l~~~l~~aDiVIsat~~~~i--i~~~~~----~~~~viIDla~ 117 (168)
T cd01080 79 --------KNLKEHTKQADIVIVAVGKPGL--VKGDMV----KPGAVVIDVGI 117 (168)
T ss_pred --------hhHHHHHhhCCEEEEcCCCCce--ecHHHc----cCCeEEEEccC
Confidence 2346678999999999998774 554443 44568999854
No 393
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.12 Score=50.76 Aligned_cols=71 Identities=24% Similarity=0.401 Sum_probs=53.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+..+.||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 4799999 578999999999988 8899888631 345556678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|--- . ..++++|++||+.+
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~vk~gavVIDvG 230 (282)
T PRK14180 204 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG 230 (282)
T ss_pred EEEEccCCcCcC---------C-----------HHHcCCCcEEEEec
Confidence 999999866311 1 24578899998743
No 394
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.94 E-value=0.13 Score=52.61 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=40.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||||+ |++|.-+...+..+ +.++ +..+... ++++....-.+.. ..+.-..+.++ +
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss~-------~sg~~~~~f~g~~--------~~v~~~~~~~~-~ 63 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFSTS-------QAGGAAPSFGGKE--------GTLQDAFDIDA-L 63 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecch-------hhCCcccccCCCc--------ceEEecCChhH-h
Confidence 789999996 99999999845443 2666 6665432 1222111101100 01111123343 6
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|.|+|.
T Consensus 64 ~~~Divf~a~~~ 75 (369)
T PRK06598 64 KKLDIIITCQGG 75 (369)
T ss_pred cCCCEEEECCCH
Confidence 889999999874
No 395
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.93 E-value=0.077 Score=53.89 Aligned_cols=88 Identities=16% Similarity=0.373 Sum_probs=52.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~ 76 (480)
+||||||. |++|.-+...|..+ +.++ +..+.-... .|. .+...+ ..+.+. .+.++ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk-~~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGK-TVQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCC-CeeeCC----------cceEEEeCCHHH-h
Confidence 58999996 99999999999964 3677 555543211 121 111111 123332 24443 6
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEec
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKS 127 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~S 127 (480)
.++|++|.|+|.. +.+.+.+. ...|..||+.|
T Consensus 67 ~~~Divf~a~~~~-------------------~s~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 67 EGVDIAFFSAGGE-------------------VSRQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred cCCCEEEECCChH-------------------HHHHHHHHHHHCCCEEEECc
Confidence 8999999998742 23333332 24678888866
No 396
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.92 E-value=0.13 Score=50.61 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=53.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 478999999999987 8899977631 335666688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++|.+++-|-.- + ...+++|++||+.+
T Consensus 203 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDvG 229 (282)
T PRK14166 203 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG 229 (282)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 999999865211 1 24578899998743
No 397
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.92 E-value=0.13 Score=51.26 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=31.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|.|.| +|++|..++..|.++ |++|++++++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 5799998 699999999999998 9999999987653
No 398
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.92 E-value=0.15 Score=51.59 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=51.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|+ |.||..++..|+.+. | .+++++++++++...+.+... .+.+ .++++++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el~---------------~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAELG---------------GGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHhc---------------cccH---HhHHHHHccC
Confidence 57999998 899999999998531 3 689999999888877664210 0111 2456778999
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|+.+...+
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999987654
No 399
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.23 Score=48.95 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=60.5
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|+.|.+.....
T Consensus 151 ~~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 191 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSN---------IVGKPVAQLLLNENATVTIAHSRT------------------------------ 191 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44568999999999543 567889999999999999875432
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| +..+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvI~AvG~~~~--i~~~~v----k~GavVIDvG 229 (284)
T PRK14170 192 ------KDLPQVAKEADILVVATGLAKF--VKKDYI----KPGAIVIDVG 229 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2456678999999999999998 443334 3456899975
No 400
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.23 Score=48.93 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=60.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+|+..|.++|+.|.+..-..
T Consensus 150 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 190 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSN---------IVGRPLAGLMVNHDATVTIAHSKT------------------------------ 190 (282)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34467999999999533 467889999999999999865432
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| ++.+.+ ++.++|||.-
T Consensus 191 ------~~l~~~~~~ADIvI~AvG~p~~--i~~~~v----k~GavVIDvG 228 (282)
T PRK14169 191 ------RNLKQLTKEADILVVAVGVPHF--IGADAV----KPGAVVIDVG 228 (282)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCcEEEEee
Confidence 2456778999999999999999 444334 3456899975
No 401
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.13 Score=50.41 Aligned_cols=70 Identities=20% Similarity=0.424 Sum_probs=53.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.++.. |.++.+..++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999987 8899988631 235566678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-.- + ..++++|.+||+.
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~ik~gavVIDv 229 (278)
T PRK14172 204 ILVVAIGRPKFI---------D-----------EEYVKEGAIVIDV 229 (278)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCcEEEEe
Confidence 999999866211 1 2457899999874
No 402
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.11 Score=51.13 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=53.1
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+ .+|.|+|..|... |..|+.++.+. .++++.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t---------------------------------~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKT---------------------------------ENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecCh---------------------------------hHHHHHHhhCC
Confidence 479999998 9999999999987 88999887532 23455688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-- +. ...+++|++||+-+
T Consensus 198 IvI~Avgk~~l--------------v~------~~~vk~GavVIDVg 224 (279)
T PRK14178 198 ILVSAAGKAGF--------------IT------PDMVKPGATVIDVG 224 (279)
T ss_pred EEEECCCcccc--------------cC------HHHcCCCcEEEEee
Confidence 99999975411 11 12358999998744
No 403
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.87 E-value=0.099 Score=52.79 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.8
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIAL 22 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~ 22 (480)
|||+|||+|.||..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999887
No 404
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.87 E-value=0.31 Score=51.16 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=29.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||+|..|.++|..|.++ |++|++.|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 589999999999999999998 999999997643
No 405
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.84 E-value=0.26 Score=48.83 Aligned_cols=120 Identities=8% Similarity=0.064 Sum_probs=68.6
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhh-h---cccCCCCCCCCCCCCCCCCcCce
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDL-Q---MNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
++|+|+|+.. ....++..|.++|.+|.+||+.-..-+..... . ..+.....- . .........++
T Consensus 2 ~~V~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~~~~i 69 (288)
T PRK09260 2 EKLVVVGAGV----------MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKL-T-EAARQAALARL 69 (288)
T ss_pred cEEEEECccH----------HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-C-HHHHHHHHhCe
Confidence 5899999754 78899999999999999999864432211100 0 000000000 0 00000012346
Q ss_pred EEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEE-EEcCCCCChHHHhh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFV-FDGRNILDVEKLRK 457 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i-~D~~~~~~~~~~~~ 457 (480)
+..+++.++++++|+|++++.-+. .+..-+.++.+.+++..+| .|+.. +++..+.+
T Consensus 70 ~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~ 127 (288)
T PRK09260 70 SYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST-MSPTEIAS 127 (288)
T ss_pred EEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHh
Confidence 778889899999999999987653 1222233455555555455 45555 55555543
No 406
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.44 Score=50.12 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=29.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|+|+|..|.+.+..|+++ |++|+++|...
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999888887 99999999754
No 407
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.83 E-value=0.23 Score=47.48 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=47.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC---eEEEEeCC----HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDIS----VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~----~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+||.|+|+|.+|..+|..|... |. +++++|++ .++.+.+... ..++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~--------~~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPD--------KNEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHH--------HHHHHHHhccCc--ccCCHHH
Confidence 4799999999999999999987 75 59999998 4443222110 011111100001 1135666
Q ss_pred HhhcCCEEEEEcc
Q 011650 75 HVREANIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
++.++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999999876
No 408
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.79 E-value=0.14 Score=47.45 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC-------cC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST-------IN 398 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 398 (480)
||+|+|+.| -.+.++-.|.++|.+|..||..-.. + ..+..... |+ .+..-.. ..
T Consensus 2 ~I~ViGlGy----------vGl~~A~~lA~~G~~V~g~D~~~~~--v-~~l~~g~~----p~--~E~~l~~ll~~~~~~~ 62 (185)
T PF03721_consen 2 KIAVIGLGY----------VGLPLAAALAEKGHQVIGVDIDEEK--V-EALNNGEL----PI--YEPGLDELLKENVSAG 62 (185)
T ss_dssp EEEEE--ST----------THHHHHHHHHHTTSEEEEE-S-HHH--H-HHHHTTSS----SS---CTTHHHHHHHHHHTT
T ss_pred EEEEECCCc----------chHHHHHHHHhCCCEEEEEeCChHH--H-HHHhhccc----cc--cccchhhhhccccccc
Confidence 799999999 8999999999999999999985332 1 22221111 11 0000000 14
Q ss_pred ceEEecChhhhcccCcEEEEeecCccccc--ccHH-------HHHhhcCCCCEEEEcCCCCC
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFKN--LDYQ-------KIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~~--~~~~-------~~~~~~~~~~~i~D~~~~~~ 451 (480)
++.+.++..++++++|+++|+++-|.-.+ .|.. .+...+++..+|+ .+.-+.
T Consensus 63 ~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvp 123 (185)
T PF03721_consen 63 RLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVP 123 (185)
T ss_dssp SEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSS
T ss_pred cchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEE
Confidence 57788899999999999999988765443 3433 4455555554444 444444
No 409
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=94.79 E-value=0.28 Score=51.89 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=64.8
Q ss_pred eEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cCHHHHhhc
Q 011650 3 KICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
+|-|||.|..|.+ +|..|+++ |++|+++|.+.. ..+.|.+. ++++. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999988 999999997653 22233321 12222 222 23667
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|.+ .|. ++.+.+ -+...+++..+|.+..|..-+||.. +..+|+..+
T Consensus 59 ~d~vV~spgi~~~--------~p~---~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 59 ADVVVVSAAIKDD--------NPE---IVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCEEEECCCCCCC--------CHH---HHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 9988776332211 232 222211 1223333446777777775555544 667777654
No 410
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.75 E-value=0.14 Score=50.39 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=52.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIAL--KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~--~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+||| .+.+|.|+|..|.+ + +..|+.+... |.++++.++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 4799999 57899999999987 5 7788877531 3356666899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
||+||.+++-|-. +. ..++++|++||+.
T Consensus 204 ADIvV~AvGkp~~--------------i~------~~~ik~GavVIDv 231 (284)
T PRK14193 204 ADIIVAAAGVAHL--------------VT------ADMVKPGAAVLDV 231 (284)
T ss_pred CCEEEEecCCcCc--------------cC------HHHcCCCCEEEEc
Confidence 9999999986521 11 2467899999874
No 411
>PRK06753 hypothetical protein; Provisional
Probab=94.75 E-value=0.034 Score=56.93 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=32.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+.+|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999998 999999998865
No 412
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.75 E-value=0.027 Score=56.19 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=47.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|.|.| .|++|..++..|+++ |++|++++++++....+........ .+.+.-..+++++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999998 9999999998765332221110000 011111123455567889
Q ss_pred EEEEEcc
Q 011650 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9988864
No 413
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.23 Score=48.97 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=61.6
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.++-++++++|.|+|=|- .-..+|+..|.++|+.|.+.+..-
T Consensus 150 ~~~~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~atVt~chs~t---------------------------- 192 (284)
T PRK14190 150 KEYNIDISGKHVVVVGRSN---------IVGKPVGQLLLNENATVTYCHSKT---------------------------- 192 (284)
T ss_pred HHcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEEeCCc----------------------------
Confidence 3344568999999999543 567889999999999999875321
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.-
T Consensus 193 --------~~l~~~~~~ADIvI~AvG~p~~--i~~~~i----k~gavVIDvG 230 (284)
T PRK14190 193 --------KNLAELTKQADILIVAVGKPKL--ITADMV----KEGAVVIDVG 230 (284)
T ss_pred --------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence 2466778999999999999998 444444 3456999974
No 414
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.70 E-value=0.15 Score=50.41 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=53.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.++.. |.|+.+.+++||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987641 335566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-.- + ..++++|++||+.
T Consensus 206 IvVsAvGkp~~i---------~-----------~~~ik~gaiVIDV 231 (294)
T PRK14187 206 ILVAAVGIPNFV---------K-----------YSWIKKGAIVIDV 231 (294)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEe
Confidence 999999876211 1 2457789999874
No 415
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.70 E-value=0.29 Score=48.19 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=60.1
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++++.|.+.....
T Consensus 151 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~AtVtichs~T------------------------------ 191 (282)
T PRK14182 151 ARVDPKGKRALVVGRSN---------IVGKPMAMMLLERHATVTIAHSRT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467899999999543 567889999999999999976532
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvI~AvGk~~~i~--~~~i----k~gaiVIDvG 229 (282)
T PRK14182 192 ------ADLAGEVGRADILVAAIGKAELVK--GAWV----KEGAVVIDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEee
Confidence 245667889999999999999844 3334 3456899975
No 416
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.69 E-value=0.06 Score=51.50 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=33.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|+|+|.+|..+|..|+.. |. +++++|.+.-....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCccccc
Confidence 3799999999999999999998 65 79999987654445554
No 417
>PRK00536 speE spermidine synthase; Provisional
Probab=94.65 E-value=0.67 Score=45.26 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=66.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.||-|||.|--|. +..+.++ ..+|+.+|+|++.++..++- . |.+.. .....|++......+.- +.-|
T Consensus 74 k~VLIiGGGDGg~--~REvLkh--~~~v~mVeID~~Vv~~~k~~-l----P~~~~---~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLEL--AHQLFKY--DTHVDFVQADEKILDSFISF-F----PHFHE---VKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchHH--HHHHHCc--CCeeEEEECCHHHHHHHHHH-C----HHHHH---hhcCCCEEEeehhhhccCCcCC
Confidence 5899999999776 6777775 34999999999999877762 1 11111 12235565554433322 4689
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
+||+-.. + + .+..+.+.+.|+++-+++..|+.|-
T Consensus 142 VIIvDs~-~------------~----~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-P------------D----IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-C------------C----hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9997631 1 1 2345677888999999988887654
No 418
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.64 E-value=0.32 Score=55.44 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=64.1
Q ss_pred eEEEECCChhHHHH-HHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|.|||+|..|.+. |..|.++ |++|+++|.++. ..+.|.+.... +....+. +.+.++|
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~gi~-----------------~~~g~~~-~~~~~~d 65 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAKGAR-----------------FFLGHQE-EHVPEDA 65 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHCCCE-----------------EeCCCCH-HHcCCCC
Confidence 49999999999997 8888888 999999997642 23334331111 1111122 3366789
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcccHHH-HHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
+||++-.-|.+ ++. +..+.+ ++ ...++...+|.+..|..-+||.. +..+|+..
T Consensus 66 ~vV~SpgI~~~--------~p~---~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 66 VVVYSSSISKD--------NVE---YLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred EEEECCCcCCC--------CHH---HHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 88776332221 222 222221 11 22233335777777776666554 56777764
No 419
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.63 E-value=0.12 Score=50.92 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.4
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRI 39 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
+|.|+|. |++|..++..|.++ |++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889987 99999999999998 99999999998754
No 420
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.16 Score=50.08 Aligned_cols=71 Identities=21% Similarity=0.400 Sum_probs=53.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.+... |.++.+..+.||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 478999999999988 8899877531 235566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-.- . ..++++|++||+.+
T Consensus 205 IvV~AvGkp~~i---------~-----------~~~vk~GavVIDvG 231 (288)
T PRK14171 205 IVVAAIGSPLKL---------T-----------AEYFNPESIVIDVG 231 (288)
T ss_pred EEEEccCCCCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999865211 1 24578999998743
No 421
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.59 E-value=0.08 Score=51.13 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=35.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAW 42 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
+|+|.|+|+ |.+|..++..|+++ |++|+++.+++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 578999995 99999999999998 99999999998876554
No 422
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.57 E-value=0.29 Score=48.51 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=60.5
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-++++++|.|+|=|- .-..+|+..|.++|+.|.+....-
T Consensus 151 ~~~i~l~Gk~vvVIGrS~---------iVGkPla~lL~~~~atVtv~hs~T----------------------------- 192 (297)
T PRK14186 151 SQQIDIAGKKAVVVGRSI---------LVGKPLALMLLAANATVTIAHSRT----------------------------- 192 (297)
T ss_pred HhCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344578999999999532 567889999999999999875432
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|- +.+.+ ++..+|||.-
T Consensus 193 -------~~l~~~~~~ADIvIsAvGkp~~i--~~~~i----k~gavVIDvG 230 (297)
T PRK14186 193 -------QDLASITREADILVAAAGRPNLI--GAEMV----KPGAVVVDVG 230 (297)
T ss_pred -------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566789999999999999984 43334 3456999975
No 423
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.57 E-value=0.087 Score=55.83 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=56.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH----hcC------CCEEEecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ----CRG------KNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~----~~~------~~l~~t~d 71 (480)
.||+|||.|.-|+..|..|+++ .|++|++||+.+.---.++-|..|.+ +....+... ... +++.+..|
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~D 117 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGVD 117 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecCc
Confidence 4799999999999999977643 28999999998766555555554443 333333221 111 23444443
Q ss_pred --HHHHhhcCCEEEEEccCC
Q 011650 72 --VEKHVREANIVFVSVNTP 89 (480)
Q Consensus 72 --~~~a~~~aDvVii~Vptp 89 (480)
.++..+..|.||+++...
T Consensus 118 vt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 118 LKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred cCHHHHHhcCCEEEEEcCCC
Confidence 566557899999998753
No 424
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.57 E-value=0.092 Score=58.13 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+||+|||.|..|+..|..|++. |++|++|+..+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 4799999999999999999998 999999998764
No 425
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.56 E-value=0.071 Score=54.21 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=35.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
.||.|||+|.+|.++|..|+.. |. +++++|.+.-....|++.
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~RQ 67 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQRQ 67 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCcc
Confidence 4799999999999999999998 77 899999986555555543
No 426
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.55 E-value=0.28 Score=48.53 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=75.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC-----CCCcCc
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS-----PSTINQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 399 (480)
++|+|+|... ....++..|...|.+|.+||+.-...+........ ..+.-.+..... .....+
T Consensus 4 ~kIaViGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGV----------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAK--LADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCH----------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH--HHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999743 78889999999999999999864321111100000 000000000000 011246
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhc---CcEEEEe
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKI---GFIVYSI 465 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~---g~~y~~i 465 (480)
+++.+++.++++++|.||+++.-+ +++.--++++....++..+|.+....+....+.+. .-++.|+
T Consensus 72 i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~ 141 (287)
T PRK08293 72 ITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLAL 141 (287)
T ss_pred eEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEE
Confidence 778889999999999999998754 23433345666666655566576666665444432 3345554
No 427
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.55 E-value=0.18 Score=49.53 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=52.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987431 335566678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
++|.+++-|-. .. ..++++|++||+.
T Consensus 203 IvI~AvGk~~~---------i~-----------~~~ik~gaiVIDv 228 (282)
T PRK14182 203 ILVAAIGKAEL---------VK-----------GAWVKEGAVVIDV 228 (282)
T ss_pred EEEEecCCcCc---------cC-----------HHHcCCCCEEEEe
Confidence 99999986521 11 2457889999874
No 428
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.54 E-value=0.25 Score=48.81 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|+|+|-+- .-...++..|.++|+.|.+.+-..
T Consensus 152 ~~i~l~Gk~vvVIGrs~---------~VG~pla~lL~~~gatVtv~~s~t------------------------------ 192 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSH---------IVGQPVSKLLLQKNASVTILHSRS------------------------------ 192 (286)
T ss_pred cCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCCc------------------------------
Confidence 34468999999999532 468899999999999999876321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
.++.+.++.||.||.++..+.|- ..+. .++..+|||.-.-
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~i--~~~~----vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGLV--TKDV----VKEGAVIIDVGNT 232 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCccc--CHHH----cCCCcEEEEcCCC
Confidence 24567789999999999999873 3333 3445699998653
No 429
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.45 E-value=1.2 Score=46.78 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..+.+++|+|+|. +.-+..+++.|...| .+|.++|.-.... .+...++.
T Consensus 176 ~~l~~~~VlViGa----------G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~------------------- 226 (417)
T TIGR01035 176 GSLKGKKALLIGA----------GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG------------------- 226 (417)
T ss_pred CCccCCEEEEECC----------hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-------------------
Confidence 3578899999996 347888999999999 7899999865432 23332210
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcC---CCCEEEEcCCC--CChHHHhhcCcEEEEec
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQ---KPAFVFDGRNI--LDVEKLRKIGFIVYSIG 466 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~---~~~~i~D~~~~--~~~~~~~~~g~~y~~iG 466 (480)
..+ ..+++.+++.++|+||.+|..++.- ++.+.+...+. .|.+++|...- ++++...-.|..++.+-
T Consensus 227 ~~i-~~~~l~~~l~~aDvVi~aT~s~~~i-i~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~vD 298 (417)
T TIGR01035 227 EAV-KFEDLEEYLAEADIVISSTGAPHPI-VSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDVD 298 (417)
T ss_pred eEe-eHHHHHHHHhhCCEEEECCCCCCce-EcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEHH
Confidence 111 1246778889999999999887653 45555555443 35699999742 34433222366666553
No 430
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.44 E-value=0.77 Score=46.07 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=56.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHH-Hc-CCCCC--CCCC-hHHHHHHhcCCCEEEecCHHHHh
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAW-NS-DQLPI--YEPG-LEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l-~~-g~~~~--~e~~-l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||++||.|.||..+....++ .+|.+|..+ |++.....+. .+ +.... .|.. ....-..+..+++.+|+|.+..+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~-m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIAS-MPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred EEEEecccccchHHHHHHhh-cCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 79999999999999999886 479998765 7776554432 22 22211 1111 12222235568899999987754
Q ss_pred h--cCCEEEEEccCC
Q 011650 77 R--EANIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
. ..|+||-++.-|
T Consensus 98 ~~~~IdvIIdATG~p 112 (438)
T COG4091 98 ANDLIDVIIDATGVP 112 (438)
T ss_pred cCCcceEEEEcCCCc
Confidence 3 457888887655
No 431
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.44 E-value=0.34 Score=47.79 Aligned_cols=101 Identities=10% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CeEEEECCCCCh--hHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK----ARLSIYDPQVPQ--EHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..+|+|+|+ ...+..+++.|.+.| .+|.++|+.... +.+...+
T Consensus 3 ~mkI~~IG~----------G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~--------------------- 51 (279)
T PRK07679 3 IQNISFLGA----------GSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY--------------------- 51 (279)
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc---------------------
Confidence 458999996 458889999999988 789999975321 1111111
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
+++...+..++++.+|+||+++.-+.+.+. .+.+....++..+|||.-+=++.+.+++
T Consensus 52 -g~~~~~~~~e~~~~aDvVilav~p~~~~~v-l~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 52 -GVKGTHNKKELLTDANILFLAMKPKDVAEA-LIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred -CceEeCCHHHHHhcCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 345567788888999999999998877663 3455555554459999855557776665
No 432
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.42 E-value=0.17 Score=51.00 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+++... |.|+++..+.||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++-|---.+ ..+++|++||+..+
T Consensus 260 IvIsAvGkp~~v~~--------------------d~vk~GavVIDVGi 287 (345)
T PLN02897 260 IVIAAAGIPNLVRG--------------------SWLKPGAVVIDVGT 287 (345)
T ss_pred EEEEccCCcCccCH--------------------HHcCCCCEEEEccc
No 433
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.42 E-value=0.37 Score=48.28 Aligned_cols=72 Identities=21% Similarity=0.383 Sum_probs=54.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCC--CCeEE-EEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 3 KICCIGAGYVGGPTMAVIALKCP--SIEVA-VVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~--G~~V~-~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||+|+|.|+.-++..|... | +|.|+ +.|++.++..++.+.. .| +.++..++++.++
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~-p~s~~~Ivava~~s~~~A~~fAq~~~~~----------------~~k~y~syEeLakd 70 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTL-PESNHQIVAVADPSLERAKEFAQRHNIP----------------NPKAYGSYEELAKD 70 (351)
T ss_pred EEEEeehhHHHHHHHHHhccC-cccCcEEEEEecccHHHHHHHHHhcCCC----------------CCccccCHHHHhcC
Confidence 799999999999999888653 4 78766 4689888887776532 21 2456677888665
Q ss_pred -cCCEEEEEccCCCC
Q 011650 78 -EANIVFVSVNTPTK 91 (480)
Q Consensus 78 -~aDvVii~Vptp~~ 91 (480)
.+|+|.|..|+|.+
T Consensus 71 ~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 71 PEVDVVYISTPNPQH 85 (351)
T ss_pred CCcCEEEeCCCCccH
Confidence 45999999998864
No 434
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.42 E-value=0.82 Score=42.79 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=68.8
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.++++++|+|.|+. .-...+++.|.+.|++|.++|.....-. ....+
T Consensus 23 ~~~l~gk~v~I~G~G----------~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--------------------- 71 (200)
T cd01075 23 TDSLEGKTVAVQGLG----------KVGYKLAEHLLEEGAKLIVADINEEAVARAAELF--------------------- 71 (200)
T ss_pred CCCCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---------------------
Confidence 457899999999984 3678899999999999999998643211 11111
Q ss_pred CceEEecChhhhcc-cCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC-CC----hHHHhhcCcEE
Q 011650 398 NQVIVASDAYEATK-DSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI-LD----VEKLRKIGFIV 462 (480)
Q Consensus 398 ~~~~~~~~~~~a~~-~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~-~~----~~~~~~~g~~y 462 (480)
+.+..++ ++.+. .+|+++-++-... ++-+.+ +.++.+ +|+++-|- +. .+.+++.|+.|
T Consensus 72 -g~~~v~~-~~l~~~~~Dv~vp~A~~~~---I~~~~~-~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~ 135 (200)
T cd01075 72 -GATVVAP-EEIYSVDADVFAPCALGGV---INDDTI-PQLKAK-AIAGAANNQLADPRHGQMLHERGILY 135 (200)
T ss_pred -CCEEEcc-hhhccccCCEEEecccccc---cCHHHH-HHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE
Confidence 1223322 33333 7999986655443 555555 445655 89999996 22 23455778888
No 435
>PLN02427 UDP-apiose/xylose synthase
Probab=94.38 E-value=0.046 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=34.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|.| .|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999998 5999999999999861 499999999877665544
No 436
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.36 E-value=0.34 Score=47.68 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|=+- .-..+|+..|.++++.|.+.+-..
T Consensus 151 y~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------ 191 (282)
T PRK14166 151 YEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 567789999999999999765321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvIsAvGkp~~i--~~~~v----k~GavVIDvG 229 (282)
T PRK14166 192 ------KDLSLYTRQADLIIVAAGCVNLL--RSDMV----KEGVIVVDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566789999999999999984 43333 3456899975
No 437
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.34 E-value=0.31 Score=47.08 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=44.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|.|+ |.||..+...+... +++++. ++|+...... .+ +..++.. ...-.+.+++|+..+..+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~~~~--g~--------d~ge~~g-~~~~gv~v~~~~~~~~~~ 69 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGSLSL--GS--------DAGELAG-LGLLGVPVTDDLLLVKAD 69 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCcccc--cc--------chhhhcc-ccccCceeecchhhcccC
Confidence 689999998 99999999988875 466654 5777653210 00 0000000 000123456666666778
Q ss_pred CCEEEEE
Q 011650 79 ANIVFVS 85 (480)
Q Consensus 79 aDvVii~ 85 (480)
+|++|=-
T Consensus 70 ~DV~IDF 76 (266)
T COG0289 70 ADVLIDF 76 (266)
T ss_pred CCEEEEC
Confidence 9998754
No 438
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.32 E-value=0.37 Score=47.36 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=59.8
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-.-
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~AtVt~chs~T------------------------------ 192 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSN---------IVGKPVAQLLLNENATVTICHSKT------------------------------ 192 (278)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44468999999999543 567889999999999999876321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.
T Consensus 193 ------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gavVIDv 229 (278)
T PRK14172 193 ------KNLKEVCKKADILVVAIGRPKF--IDEEYV----KEGAIVIDV 229 (278)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCc--cCHHHc----CCCcEEEEe
Confidence 2456678999999999999998 444334 345699997
No 439
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.31 E-value=0.15 Score=41.36 Aligned_cols=88 Identities=15% Similarity=0.222 Sum_probs=58.7
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCC---CeEE-EECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDK---ARLS-IYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g---~~V~-~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|. ...+..|++.|.+.| .+|. ++++.-.... ....+ .+
T Consensus 1 kI~iIG~----------G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~~ 48 (96)
T PF03807_consen 1 KIGIIGA----------GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------GV 48 (96)
T ss_dssp EEEEEST----------SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------TT
T ss_pred CEEEECC----------CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------cc
Confidence 6788885 357899999999999 9999 5588644322 22222 13
Q ss_pred EEec-ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 401 IVAS-DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~~~-~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.... +..++++.+|+|+++++...+.++-. .+....+ .++|||.-
T Consensus 49 ~~~~~~~~~~~~~advvilav~p~~~~~v~~-~i~~~~~-~~~vis~~ 94 (96)
T PF03807_consen 49 QATADDNEEAAQEADVVILAVKPQQLPEVLS-EIPHLLK-GKLVISIA 94 (96)
T ss_dssp EEESEEHHHHHHHTSEEEE-S-GGGHHHHHH-HHHHHHT-TSEEEEES
T ss_pred ccccCChHHhhccCCEEEEEECHHHHHHHHH-HHhhccC-CCEEEEeC
Confidence 3344 78999999999999999998877432 3333333 44888864
No 440
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.30 E-value=0.083 Score=53.73 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=40.2
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEE---EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhh
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVA---VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVR 77 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~---~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+||| .|++|.-+...|+++ +|++. .+....+.-+.+. ..+ ..+.+.+ +.+ .+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~~-~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKIE-SFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCChH-Hhc
Confidence 689999 799999999999886 66643 4434322111111 001 1122221 333 468
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999874
No 441
>PLN02214 cinnamoyl-CoA reductase
Probab=94.27 E-value=0.28 Score=49.75 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|+|.|.|. |++|..++..|+++ |++|++++++.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCchh
Confidence 367999997 99999999999998 9999999997654
No 442
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.27 E-value=0.37 Score=47.41 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=60.8
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+..+-++++++|.|+|=+. .-..+|+..|.++|+.|.+.+-.-
T Consensus 150 ~~y~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~ATVt~chs~T---------------------------- 192 (282)
T PRK14180 150 REYGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRFT---------------------------- 192 (282)
T ss_pred HHhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEEcCCC----------------------------
Confidence 3344578999999999543 567889999999999998865322
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+-++.||.||.++.++.| +..+.+ ++.++|||.-
T Consensus 193 --------~dl~~~~k~ADIvIsAvGkp~~--i~~~~v----k~gavVIDvG 230 (282)
T PRK14180 193 --------TDLKSHTTKADILIVAVGKPNF--ITADMV----KEGAVVIDVG 230 (282)
T ss_pred --------CCHHHHhhhcCEEEEccCCcCc--CCHHHc----CCCcEEEEec
Confidence 2455567899999999999998 444344 3456999974
No 443
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.38 Score=47.34 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=59.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|+.|.+..-.-
T Consensus 151 ~~i~l~Gk~vvViGrS~---------~VG~Pla~lL~~~~AtVti~hs~T------------------------------ 191 (281)
T PRK14183 151 YEIDVKGKDVCVVGASN---------IVGKPMAALLLNANATVDICHIFT------------------------------ 191 (281)
T ss_pred cCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999432 467889999999999998864321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.+++|-. .+.+ ++..+|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvGkp~~i~--~~~v----k~gavvIDvG 229 (281)
T PRK14183 192 ------KDLKAHTKKADIVIVGVGKPNLIT--EDMV----KEGAIVIDIG 229 (281)
T ss_pred ------cCHHHHHhhCCEEEEecCcccccC--HHHc----CCCcEEEEee
Confidence 245667899999999999999844 3333 3456899975
No 444
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=94.21 E-value=0.44 Score=45.95 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=69.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHH------HHHhcCCCEEEecCH--H
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEV------VKQCRGKNLFFSTDV--E 73 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~------~~~~~~~~l~~t~d~--~ 73 (480)
+|.|||+|.+|.++|.+|+.. |. +++++|-+.-....+++....-.+.|..+. +++. +..+++..-. -
T Consensus 28 rVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eL-NP~V~V~~i~~rl 104 (287)
T PTZ00245 28 SVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRL-NPHVSVYDAVTKL 104 (287)
T ss_pred eEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHH-CCCcEEEEccccc
Confidence 799999999999999999998 65 799999877666666654322212221111 1111 1223322111 1
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.....++++++..+ ++++.+.+...++.-.+++..+|..+-|...
T Consensus 105 d~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~~ 150 (287)
T PTZ00245 105 DGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLAL 150 (287)
T ss_pred CCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhhH
Confidence 113466777777542 3566777777777667888888877666443
No 445
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.20 E-value=0.18 Score=53.56 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999865
No 446
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.20 E-value=0.13 Score=56.04 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~ 170 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGP 170 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4799999999999999999998 99999999643
No 447
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.41 Score=47.12 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
..+-+++|++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 152 ~y~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVt~chs~T----------------------------- 193 (284)
T PRK14177 152 EYGIDVTGKNAVVVGRSP---------ILGKPMAMLLTEMNATVTLCHSKT----------------------------- 193 (284)
T ss_pred HhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344578999999999543 567889999999999999976432
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|- ..+.+ ++.++|||.-
T Consensus 194 -------~~l~~~~~~ADIvIsAvGk~~~i--~~~~i----k~gavVIDvG 231 (284)
T PRK14177 194 -------QNLPSIVRQADIIVGAVGKPEFI--KADWI----SEGAVLLDAG 231 (284)
T ss_pred -------CCHHHHHhhCCEEEEeCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566689999999999999984 43334 3456999974
No 448
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.17 E-value=0.74 Score=48.99 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999653
No 449
>PRK08328 hypothetical protein; Provisional
Probab=94.17 E-value=0.18 Score=48.43 Aligned_cols=42 Identities=21% Similarity=0.504 Sum_probs=35.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
.||.|+|+|.+|..+|..|+.. |. +++++|.+.-....+++.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq 70 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA--GVGRILLIDEQTPELSNLNRQ 70 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCccChhhhccc
Confidence 3799999999999999999998 64 799999887666666654
No 450
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.11 E-value=0.19 Score=49.66 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=49.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-----
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV----- 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----- 76 (480)
.++|+|||.+|++.+.-....+ --+++++|+|+++.+..++ |...+..|. .....+.+.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-------------d~~~~i~evi~EmTd 260 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGATEFINPK-------------DLKKPIQEVIIEMTD 260 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcceecChh-------------hccccHHHHHHHHhc
Confidence 5899999999999887766652 3589999999999998776 333332222 0111222322
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.+.|+-|.|+..
T Consensus 261 gGvDysfEc~G~ 272 (375)
T KOG0022|consen 261 GGVDYSFECIGN 272 (375)
T ss_pred CCceEEEEecCC
Confidence 378999999874
No 451
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.10 E-value=0.42 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=32.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCH---HHHHHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISV---PRINAWN 43 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~---~~v~~l~ 43 (480)
++.|+|+|-.|.+++..|+.. |.. |++++|++ ++.+++.
T Consensus 128 ~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 588999999999999999988 875 99999996 5555544
No 452
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.07 E-value=0.081 Score=60.98 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=30.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|||.|.-|++.|..|+++ ||+|++||...
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~ 339 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFH 339 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCC
Confidence 5899999999999999999998 99999999864
No 453
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.06 E-value=0.21 Score=50.52 Aligned_cols=72 Identities=24% Similarity=0.422 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.||| ...+|.|+|..|.++ +..|+.+... |.|+++.++.||
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR---------------------------------TKNPEEITREAD 276 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCeEEEeCCC---------------------------------CCCHHHHHhhCC
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++-|---.. ..+++|++||+..+
T Consensus 277 IVIsAvGkp~~i~~--------------------d~vK~GAvVIDVGI 304 (364)
T PLN02616 277 IIISAVGQPNMVRG--------------------SWIKPGAVVIDVGI 304 (364)
T ss_pred EEEEcCCCcCcCCH--------------------HHcCCCCEEEeccc
No 454
>PRK12320 hypothetical protein; Provisional
Probab=94.06 E-value=0.24 Score=55.01 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=31.1
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|||.|.| +|++|..++..|.++ ||+|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChh
Confidence 7999999 699999999999998 999999998754
No 455
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.06 E-value=0.056 Score=54.22 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=29.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|+|||.|..|+.+|..|+++ |++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 3799999999999999999999 999999998753
No 456
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.04 E-value=0.57 Score=44.83 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCCEEEEEccCCCCcCCCCCCCCCchHHHH
Q 011650 29 VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REANIVFVSVNTPTKTQGLGAGKAADLTYWE 107 (480)
Q Consensus 29 V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~ 107 (480)
|.++|+++++.+.+.+.. +....+|+++.+ .+.|+|++|.|+..+
T Consensus 5 vaV~D~~~e~a~~~a~~~------------------g~~~~~d~~eLl~~~vDaVviatp~~~H---------------- 50 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------------------GAKIVSDFDEFLPEDVDIVVEAASQEAV---------------- 50 (229)
T ss_pred EEEECCCHHHHHHHHHHh------------------CCceECCHHHHhcCCCCEEEECCChHHH----------------
Confidence 557999999988776521 134567888765 579999999886432
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCccc---HHHHHHHHHhhcCCCceEEe
Q 011650 108 SAARMIADVSKSDKIVVEKSTVPVKT---AEAIEKILMHNSRGINFQIL 153 (480)
Q Consensus 108 ~~~~~i~~~l~~~~iVi~~STv~~gt---~~~l~~~l~~~~~g~~~~v~ 153 (480)
.+...+.++.|+-|++.|.....+ .+++.+..++. |..+++.
T Consensus 51 --~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 51 --KEYAEKILKNGKDLLIMSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred --HHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 222334455566565566543333 34444444443 3455554
No 457
>PLN00203 glutamyl-tRNA reductase
Probab=94.01 E-value=1.3 Score=47.74 Aligned_cols=129 Identities=7% Similarity=0.019 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-eEEEECCCCChh-HHHhhhhcccCCCCC
Q 011650 309 RFVNRVVSSMFN-TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA-RLSIYDPQVPQE-HIQRDLQMNKFDWDH 385 (480)
Q Consensus 309 ~~~~~~~~~~~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~-~~~~~~~~~~~~~~~ 385 (480)
-.++...+.++. ++.+++|+|+|.. ..+..+++.|...|+ +|.++++..... .+...++
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG----------~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~-------- 311 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAG----------KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP-------- 311 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCH----------HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--------
Confidence 334444444432 4789999999963 478888999999997 699999875542 2222221
Q ss_pred CCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhc------CCCCEEEEcCC--CCChHHHhh
Q 011650 386 PIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNM------QKPAFVFDGRN--ILDVEKLRK 457 (480)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~------~~~~~i~D~~~--~~~~~~~~~ 457 (480)
+..-.+...+++.+++.++|+||.+|.-+.+- +..+.+...+ .+|.++||.-- =+++.--.-
T Consensus 312 ---------g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv-I~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l 381 (519)
T PLN00203 312 ---------DVEIIYKPLDEMLACAAEADVVFTSTSSETPL-FLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSEL 381 (519)
T ss_pred ---------CCceEeecHhhHHHHHhcCCEEEEccCCCCCe-eCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccC
Confidence 00001112346778899999999999655442 3444444433 14669999743 233332222
Q ss_pred cCcEEEEe
Q 011650 458 IGFIVYSI 465 (480)
Q Consensus 458 ~g~~y~~i 465 (480)
.|..++-|
T Consensus 382 ~~v~lydi 389 (519)
T PLN00203 382 ESARVYNV 389 (519)
T ss_pred CCCeEEEe
Confidence 35666555
No 458
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.01 E-value=0.24 Score=48.89 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.. + +..|+.++.+ |.++++.+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~--~AtVt~~hs~---------------------------------t~~l~~~~ 202 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFA--NATVTVCHSR---------------------------------TPDLAEEC 202 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccC--CCEEEEEeCC---------------------------------chhHHHHH
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.||+||.+++.|..- -..++++|++||+.+.
T Consensus 203 ~~ADIVI~AvG~p~li--------------------~~~~vk~GavVIDVGi 234 (286)
T PRK14184 203 READFLFVAIGRPRFV--------------------TADMVKPGAVVVDVGI 234 (286)
T ss_pred HhCCEEEEecCCCCcC--------------------CHHHcCCCCEEEEeee
No 459
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.97 E-value=0.22 Score=55.34 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|..|++.|..|++. |++|++||..+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~ 360 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHP 360 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4799999999999999999998 99999999864
No 460
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.96 E-value=0.46 Score=47.01 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=59.7
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 154 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVt~chs~T------------------------------ 194 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSN---------IVGKPMACLLLGENCTVTTVHSAT------------------------------ 194 (294)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHhhCCCEEEEeCCCC------------------------------
Confidence 34568999999999543 567889999999999999866432
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++..+|||.
T Consensus 195 ------~~l~~~~~~ADIvVsAvGkp~~--i~~~~i----k~gaiVIDV 231 (294)
T PRK14187 195 ------RDLADYCSKADILVAAVGIPNF--VKYSWI----KKGAIVIDV 231 (294)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEe
Confidence 2456678999999999999998 444344 345689997
No 461
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.95 E-value=0.4 Score=47.21 Aligned_cols=115 Identities=12% Similarity=0.195 Sum_probs=76.9
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----eEEEECCCCChhHHHh-hhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA----RLSIYDPQVPQEHIQR-DLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+|+|+|+. ..+..+++.|.+.|. +|.+||+-...-+... .+ +
T Consensus 3 ~~IgfIG~G----------~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~----------------------g 50 (272)
T PRK12491 3 KQIGFIGCG----------NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY----------------------G 50 (272)
T ss_pred CeEEEECcc----------HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc----------------------C
Confidence 479999974 488899999998874 6999998543211111 11 2
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCccccccCCCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+..+++..+.++++|+|++++.-..+.+. ++.+....++..+|+|.-.=++-+.+++. +| +..++.+-||..
T Consensus 51 ~~~~~~~~e~~~~aDiIiLavkP~~~~~v-l~~l~~~~~~~~lvISi~AGi~i~~l~~~------l~-~~~~vvR~MPN~ 122 (272)
T PRK12491 51 ITITTNNNEVANSADILILSIKPDLYSSV-INQIKDQIKNDVIVVTIAAGKSIKSTENE------FD-RKLKVIRVMPNT 122 (272)
T ss_pred cEEeCCcHHHHhhCCEEEEEeChHHHHHH-HHHHHHhhcCCcEEEEeCCCCcHHHHHHh------cC-CCCcEEEECCCh
Confidence 45566777888999999999996655542 24455444444599999888887777753 12 123456666643
No 462
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.94 E-value=0.45 Score=46.94 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=59.6
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++.+++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 158 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------ 198 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSN---------VVGKPMAAMLLNRNATVSVCHVFT------------------------------ 198 (287)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCEEEEEeccC------------------------------
Confidence 44468999999999432 357889999999999999977321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..|.|- ..+ .+++..+|||.-
T Consensus 199 ------~~l~~~~~~ADIvv~AvG~p~~i--~~~----~vk~gavVIDvG 236 (287)
T PRK14176 199 ------DDLKKYTLDADILVVATGVKHLI--KAD----MVKEGAVIFDVG 236 (287)
T ss_pred ------CCHHHHHhhCCEEEEccCCcccc--CHH----HcCCCcEEEEec
Confidence 24566789999999999999974 333 334556899975
No 463
>PRK07588 hypothetical protein; Provisional
Probab=93.93 E-value=0.061 Score=55.55 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999998 999999998753
No 464
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.90 E-value=0.46 Score=46.89 Aligned_cols=79 Identities=9% Similarity=0.027 Sum_probs=60.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 153 ~~i~l~Gk~vvViGrs~---------iVG~Pla~lL~~~~atVtv~hs~T------------------------------ 193 (285)
T PRK10792 153 YGIDTYGLNAVVVGASN---------IVGRPMSLELLLAGCTVTVCHRFT------------------------------ 193 (285)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCeEEEEECCC------------------------------
Confidence 34568899999999432 357889999999999999975321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|- .. +.+++..+|||.-
T Consensus 194 ------~~l~~~~~~ADIvi~avG~p~~v--~~----~~vk~gavVIDvG 231 (285)
T PRK10792 194 ------KNLRHHVRNADLLVVAVGKPGFI--PG----EWIKPGAIVIDVG 231 (285)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcccc--cH----HHcCCCcEEEEcc
Confidence 24667789999999999999973 33 3345567999986
No 465
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.90 E-value=0.091 Score=40.09 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.2
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.-|+..|..|+++ |++|++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999998 99999999864
No 466
>PRK07538 hypothetical protein; Provisional
Probab=93.90 E-value=0.063 Score=55.98 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+.+|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999998 999999998764
No 467
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.90 E-value=0.074 Score=55.07 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
..|.|||.|.+|+++|..|++..+|++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999865689999999864
No 468
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.89 E-value=0.38 Score=47.47 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=58.9
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|+.|.+.+-.-
T Consensus 151 ~~i~l~Gk~vvVvGrs~---------~VG~Pla~lL~~~gAtVtv~hs~t------------------------------ 191 (285)
T PRK14191 151 YHIEIKGKDVVIIGASN---------IVGKPLAMLMLNAGASVSVCHILT------------------------------ 191 (285)
T ss_pred hCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCEEEEEeCCc------------------------------
Confidence 34467899999999432 467889999999999999874221
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|-. .+.+ ++..+|+|.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvG~p~~i~--~~~v----k~GavVIDvG 229 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVGKPDLIK--ASMV----KKGAVVVDIG 229 (285)
T ss_pred ------HHHHHHHHhCCEEEEecCCCCcCC--HHHc----CCCcEEEEee
Confidence 234567899999999999999844 3333 4456899975
No 469
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.89 E-value=0.49 Score=46.95 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=60.2
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 161 ~~i~l~Gk~vvVIGRS~---------iVGkPla~lL~~~~ATVtvchs~T------------------------------ 201 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSN---------IVGLPVSLLLLKADATVTVVHSRT------------------------------ 201 (299)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34578999999999533 567889999999999999975431
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|-.-+ .+ ++.++|||.-
T Consensus 202 ------~nl~~~~~~ADIvv~AvGk~~~i~~~--~v----k~gavVIDvG 239 (299)
T PLN02516 202 ------PDPESIVREADIVIAAAGQAMMIKGD--WI----KPGAAVIDVG 239 (299)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCccCHH--Hc----CCCCEEEEee
Confidence 24677789999999999999874422 33 4456899975
No 470
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.84 E-value=0.31 Score=48.02 Aligned_cols=74 Identities=19% Similarity=0.405 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCP--SIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+||| ...+|.|+|..|.++++ +..|+.+... |.++++.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------------------T~~l~~~~~~ 200 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------------------SENLTEILKT 200 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------------------CCCHHHHHhh
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||+||.+++-|-.- =..++++|++||+..+
T Consensus 201 ADIvV~AvG~p~~i--------------------~~~~ik~GavVIDvGi 230 (287)
T PRK14181 201 ADIIIAAIGVPLFI--------------------KEEMIAEKAVIVDVGT 230 (287)
T ss_pred CCEEEEccCCcCcc--------------------CHHHcCCCCEEEEecc
No 471
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.17 Score=50.13 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=32.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRIN 40 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
|+|-|.| .|++|..++..|.++ ||+|+++|+......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCcccc
Confidence 5689999 599999999999998 999999999765543
No 472
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=93.83 E-value=0.2 Score=49.88 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCh--hHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCc
Q 011650 346 AIDVCKGLMGDKARLSIYDPQVPQ--EHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
...+++.|.+.|++|.+||+.-.. .+.+..+. ..+...++++.++++++|+|+++++-+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~La-------------------eaGA~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVE-------------------DAGVKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHH-------------------HCCCeecCCHHHHHhCCCEEEEecCCH
Confidence 568999999999999999975432 11111111 124567788999999999999999876
Q ss_pred cc-ccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 424 EF-KNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
+- +++ ...+...+++..+|||+.-+-+
T Consensus 93 aaV~eV-l~GLaa~L~~GaIVID~STIsP 120 (341)
T TIGR01724 93 KGTFSI-ARTIIEHVPENAVICNTCTVSP 120 (341)
T ss_pred HHHHHH-HHHHHhcCCCCCEEEECCCCCH
Confidence 52 233 2456666666779999965543
No 473
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.53 Score=46.40 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh--CCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG--DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSP 394 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~--~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
..+-++++++|.|+|=+- .-..+|+..|.+ +++.|.+..-.-
T Consensus 151 ~~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~~~atVtvchs~T--------------------------- 194 (284)
T PRK14193 151 RYDVELAGAHVVVIGRGV---------TVGRPIGLLLTRRSENATVTLCHTGT--------------------------- 194 (284)
T ss_pred HhCCCCCCCEEEEECCCC---------cchHHHHHHHhhccCCCEEEEeCCCC---------------------------
Confidence 344567899999999643 567889999988 799998865321
Q ss_pred CCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 395 STINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| +..+.+ ++.++|||.-
T Consensus 195 ---------~~l~~~~k~ADIvV~AvGkp~~--i~~~~i----k~GavVIDvG 232 (284)
T PRK14193 195 ---------RDLAAHTRRADIIVAAAGVAHL--VTADMV----KPGAAVLDVG 232 (284)
T ss_pred ---------CCHHHHHHhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2467778999999999999998 444344 3456999975
No 474
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.79 E-value=0.32 Score=48.30 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=51.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.+ + +..|+....+ +.++++.+
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~---------------------------------t~~l~~~~ 204 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA---------------------------------TKDIPSYT 204 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC---------------------------------chhHHHHH
Confidence 4799999 57899999999987 4 6788877642 23456678
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+.||++|.+++.|-. .. ..++++|++||+.+
T Consensus 205 ~~ADIvI~Avg~~~l---------i~-----------~~~vk~GavVIDVg 235 (295)
T PRK14174 205 RQADILIAAIGKARF---------IT-----------ADMVKPGAVVIDVG 235 (295)
T ss_pred HhCCEEEEecCccCc---------cC-----------HHHcCCCCEEEEee
Confidence 999999999976511 11 13458899998754
No 475
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.75 E-value=0.48 Score=41.88 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=68.4
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
...++++|+|+|.. ..+..+++.|.+.| .+|.++|+..... .....++. ..
T Consensus 15 ~~~~~~~i~iiG~G----------~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-----------------~~ 67 (155)
T cd01065 15 IELKGKKVLILGAG----------GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-----------------LG 67 (155)
T ss_pred CCCCCCEEEEECCc----------HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-----------------cc
Confidence 34678899999953 36888999999886 7899999864432 22222210 00
Q ss_pred CceEEecChhhhcccCcEEEEeecCccc--ccccHHHHHhhcCCCCEEEEcCCCCCh-----HHHhhcCcEE
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEF--KNLDYQKIYNNMQKPAFVFDGRNILDV-----EKLRKIGFIV 462 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~~~~~~-----~~~~~~g~~y 462 (480)
-.. ...+..+.++++|+||++|+-... .+.... ...+++..+|+|.-.. +. +.+++.|..+
T Consensus 68 ~~~-~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~-~~~~~l~~~~~~~g~~~ 135 (155)
T cd01065 68 IAI-AYLDLEELLAEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYN-PLETPLLKEARALGAKT 135 (155)
T ss_pred cce-eecchhhccccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcC-CCCCHHHHHHHHCCCce
Confidence 001 234566778999999999988764 111111 1123455689999554 33 3445566654
No 476
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.54 Score=46.40 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-.-
T Consensus 153 y~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~ATVtichs~T------------------------------ 193 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSN---------IVGKPLSALLLKENCSVTICHSKT------------------------------ 193 (288)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 467789999999999999865321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 194 ------~~L~~~~~~ADIvV~AvGkp~~i~--~~~v----k~GavVIDvG 231 (288)
T PRK14171 194 ------HNLSSITSKADIVVAAIGSPLKLT--AEYF----NPESIVIDVG 231 (288)
T ss_pred ------CCHHHHHhhCCEEEEccCCCCccC--HHHc----CCCCEEEEee
Confidence 245667899999999999998754 3333 4456899975
No 477
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.73 E-value=0.07 Score=55.66 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
|||.|||.|.-|+++|..|+++ |+ +|+++++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999998 74 9999998754
No 478
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.71 E-value=2.2 Score=39.58 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=61.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHh----h
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHV----R 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~----~ 77 (480)
+|.-+|+|.-..++..... ..++.+|+++|++++.++..++..... ++ ..++.+ ..|..+.+ .
T Consensus 43 ~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred EEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcCC
Confidence 5778888772222222111 112468999999999888665421000 00 012222 23333322 3
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|.||+..... + +..+++.+...++++..++. .+....+.+++...+++.
T Consensus 111 ~~D~V~~~~~~~------------~---~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 111 KFDRIFIGGGSE------------K---LKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENI 161 (198)
T ss_pred CCCEEEECCCcc------------c---HHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHc
Confidence 589998864321 1 35567777788888665554 333445555666666554
No 479
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.64 E-value=0.086 Score=54.07 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|.+|++.|..|++. |++|+++|..+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 5799999999999999999998 89999999765
No 480
>PRK07236 hypothetical protein; Provisional
Probab=93.62 E-value=0.083 Score=54.52 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 4899999999999999999998 999999998753
No 481
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.62 E-value=0.6 Score=43.28 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++++++|.|+|=+- .-..+|+..|.++|+.|.+.|=..-.. +.+ +..++|..|... +
T Consensus 58 ~~l~GK~vvVIGrS~---------iVGkPla~lL~~~~AtVti~~~~~~~~-~~~---------~~~~~hs~t~~~---~ 115 (197)
T cd01079 58 NRLYGKTITIINRSE---------VVGRPLAALLANDGARVYSVDINGIQV-FTR---------GESIRHEKHHVT---D 115 (197)
T ss_pred CCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEEecCcccc-ccc---------cccccccccccc---c
Confidence 367999999999543 567889999999999999987432111 000 001111111000 0
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
...++.+.++.||+||.++..++|+ +..+.+ ++.++|||.--
T Consensus 116 --~~~~l~~~~~~ADIVIsAvG~~~~~-i~~d~i----k~GavVIDVGi 157 (197)
T cd01079 116 --EEAMTLDCLSQSDVVITGVPSPNYK-VPTELL----KDGAICINFAS 157 (197)
T ss_pred --hhhHHHHHhhhCCEEEEccCCCCCc-cCHHHc----CCCcEEEEcCC
Confidence 0112567889999999999999984 333333 34568999754
No 482
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.59 E-value=0.12 Score=44.90 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.||+|+|+|.+|..+|..|++. |. +++++|.+.=..+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d~v~~~nl~ 43 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDDIVEPSNLN 43 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESSBB-GGGCC
T ss_pred CEEEEECcCHHHHHHHHHHHHh--CCCceeecCCcceeecccc
Confidence 4899999999999999999998 76 7999998653333333
No 483
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.59 E-value=0.078 Score=54.77 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|++. |++|+++|+.+.
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4799999999999999999998 999999998764
No 484
>PRK06153 hypothetical protein; Provisional
Probab=93.59 E-value=0.072 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=32.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|||||-+|+.++..|++. |. +++++|-|.=...-|++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc--CCCEEEEECCCEeccccccc
Confidence 3799999999999999999998 54 89999987544444444
No 485
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.59 E-value=0.9 Score=43.47 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=35.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|.|+| .|.+|..+|..|+++ |++|+++++++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 7899998 499999999999998 999999999987766544
No 486
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.58 E-value=0.1 Score=52.31 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|+|||.|..|+.+|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999987
No 487
>PLN02477 glutamate dehydrogenase
Probab=93.56 E-value=0.75 Score=47.88 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~ 35 (480)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|.+
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~--GakVVaVsD~~ 239 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK--GGKIVAVSDIT 239 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 4899999999999999999998 89988 55765
No 488
>PRK06847 hypothetical protein; Provisional
Probab=93.53 E-value=0.081 Score=54.16 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+++|.|||.|..|+.+|..|++. |++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 35799999999999999999998 999999998753
No 489
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.53 E-value=0.083 Score=54.33 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|..|+++|..|++. |++|+++|..+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCCC
Confidence 67899999999999999999998 99999999753
No 490
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.52 E-value=0.69 Score=38.19 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCH---HHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDV---EKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~---~~a~~~ 78 (480)
+|--||+|.-..++ .+++..++.+|+++|.+++.++..++.. .+.....++++ ..|. .+....
T Consensus 4 ~vLDlGcG~G~~~~--~l~~~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~i~~~~~d~~~~~~~~~~ 70 (112)
T PF12847_consen 4 RVLDLGCGTGRLSI--ALARLFPGARVVGVDISPEMLEIARERA-----------AEEGLSDRITFVQGDAEFDPDFLEP 70 (112)
T ss_dssp EEEEETTTTSHHHH--HHHHHHTTSEEEEEESSHHHHHHHHHHH-----------HHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred EEEEEcCcCCHHHH--HHHhcCCCCEEEEEeCCHHHHHHHHHHH-----------HhcCCCCCeEEEECccccCcccCCC
Confidence 67889998844433 3444223899999999999988777521 00011234443 3344 112346
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
.|+|+..- ..... ..+......+++.+...++++..+++.
T Consensus 71 ~D~v~~~~-~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 71 FDLVICSG-FTLHF-------LLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEEEECS-GSGGG-------CCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECC-Ccccc-------ccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 78888764 11110 223345577888999999988877654
No 491
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.48 E-value=0.087 Score=54.52 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+++|.|||.|..|+.+|..|+++ |++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence 36799999999999999999999 9999999997
No 492
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.48 E-value=0.51 Score=45.05 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=59.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh---hc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV---RE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~ 78 (480)
++|.=|||| |.-++..+|+. |.+|++.|.+++-++..+..-. |.++. .... +.+.++.. ..
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~---e~gv~--------i~y~-~~~~edl~~~~~~ 124 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARL--GASVTGIDASEKPIEVAKLHAL---ESGVN--------IDYR-QATVEDLASAGGQ 124 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhh---hcccc--------ccch-hhhHHHHHhcCCC
Confidence 356678888 45788999998 9999999999998876653210 11110 0001 11223322 24
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
.|+|+.+ - .-+ ..+|. .+.++...+.++|+.+++. ||+-
T Consensus 125 FDvV~cm-E--VlE------Hv~dp---~~~~~~c~~lvkP~G~lf~-STin 163 (243)
T COG2227 125 FDVVTCM-E--VLE------HVPDP---ESFLRACAKLVKPGGILFL-STIN 163 (243)
T ss_pred ccEEEEh-h--HHH------ccCCH---HHHHHHHHHHcCCCcEEEE-eccc
Confidence 6766544 1 111 13443 4567788888999887765 6664
No 493
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=93.46 E-value=3.8 Score=38.52 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=64.9
Q ss_pred CEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 65 NLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
++.+|+|-.++++++|+|+.=+|-. +..||+ ++.+...+++|.+|....|+|.. ++.+++++.
T Consensus 126 g~~vttddreavedad~iitwlpkg--------~~qpdi------ikkfiddipegaivthactiptt---kf~kifed~ 188 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKG--------GVQPDI------IKKFIDDIPEGAIVTHACTIPTT---KFKKIFEDM 188 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCC--------CCCccH------HHHHHhcCCCCceEeeecccchH---HHHHHHHHh
Confidence 3678888888999999999998853 235553 66777788999999988888743 455666665
Q ss_pred cCCCceE-EeeCCcccccCccccccCCCCeEEE-EccCCcchHHHHHHHHHHHh
Q 011650 145 SRGINFQ-ILSNPEFLAEGTAINDLFKPDRVLI-GGRETPEGMKAIKALKDVYA 196 (480)
Q Consensus 145 ~~g~~~~-v~~~Pe~~~~G~a~~~~~~~~~vvi-G~~~~~~~~~~~~~~~~l~~ 196 (480)
++ .+.. ..|+|--..+ +.. .+.+ -|. .++++.+.+.++=+
T Consensus 189 gr-edlnvtsyhpg~vpe------mkg--qvyiaegy---aseeavn~lyelg~ 230 (343)
T COG4074 189 GR-EDLNVTSYHPGTVPE------MKG--QVYIAEGY---ASEEAVNALYELGE 230 (343)
T ss_pred Cc-cccceeccCCCCCcc------ccC--cEEEeccc---ccHHHHHHHHHHHH
Confidence 53 2222 3467644322 111 2333 233 25777776665543
No 494
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.45 E-value=0.76 Score=47.78 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|... -...++..|...|++|.++|........... .+.
T Consensus 192 ~l~Gk~VvViG~G~----------IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----------------------~G~ 239 (406)
T TIGR00936 192 LIAGKTVVVAGYGW----------CGKGIAMRARGMGARVIVTEVDPIRALEAAM----------------------DGF 239 (406)
T ss_pred CCCcCEEEEECCCH----------HHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----------------------cCC
Confidence 46899999999755 7888999999999999999543222111111 122
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC--C-CChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN--I-LDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~--~-~~~~~~~ 456 (480)
.+ .+.+++++++|++|..|..+.. ++ ......|++.++++..-. . +|.+.+.
T Consensus 240 ~v-~~leeal~~aDVVItaTG~~~v--I~-~~~~~~mK~GailiN~G~~~~eId~~aL~ 294 (406)
T TIGR00936 240 RV-MTMEEAAKIGDIFITATGNKDV--IR-GEHFENMKDGAIVANIGHFDVEIDVKALE 294 (406)
T ss_pred Ee-CCHHHHHhcCCEEEECCCCHHH--HH-HHHHhcCCCCcEEEEECCCCceeCHHHHH
Confidence 22 2567889999999999887553 23 235567887767776544 2 4444443
No 495
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.41 E-value=0.17 Score=56.10 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|+|||.|..|+..|..|++. |++|+++|.++.
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~ 227 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQ 227 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 5899999999999999999998 999999998754
No 496
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.38 E-value=0.45 Score=48.05 Aligned_cols=103 Identities=8% Similarity=0.011 Sum_probs=67.2
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
-+|+|+|+ .+....++..|.+.|.+|.+||+.....+.....+......+ .......+...+
T Consensus 5 m~I~iIG~----------G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~--------g~~~~~~~~~~~ 66 (328)
T PRK14618 5 MRVAVLGA----------GAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLP--------GVALPAELYPTA 66 (328)
T ss_pred CeEEEECc----------CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCC--------CCcCCCCeEEeC
Confidence 37999997 578999999999999999999995433221111110000000 001112355667
Q ss_pred ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 405 DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
++.++++++|.|+++++....+ .+.+.+++..+++|..+=+
T Consensus 67 ~~~e~~~~aD~Vi~~v~~~~~~-----~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 67 DPEEALAGADFAVVAVPSKALR-----ETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CHHHHHcCCCEEEEECchHHHH-----HHHHhcCcCCEEEEEeecc
Confidence 8888899999999999988643 3445555555889988833
No 497
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.37 E-value=0.44 Score=49.63 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=28.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|+|.|+|+|.-|.++|..|. + |++|+++|.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~--G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K--FGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C--CCeEEEEcCC
Confidence 78999999999999999988 8 9999999954
No 498
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=93.36 E-value=0.31 Score=49.60 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCeEEEECCCCChh--HHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCc
Q 011650 346 AIDVCKGLMGDKARLSIYDPQVPQE--HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
...++..|.+.|.+|.+||+.-..- .....+. ..+++...+..++++++|+||++++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~-------------------~~Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVE-------------------DAGVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHH-------------------HCCCEEeCCHHHHHhCCCEEEEECCCc
Confidence 5788899999999999999864311 0111111 134667778889999999999999977
Q ss_pred c-cccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 424 E-FKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 424 ~-~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
. .++. ++.+...+++..+|+|+...-
T Consensus 93 ~~v~~V-l~~L~~~L~~g~IVId~ST~~ 119 (342)
T PRK12557 93 KKTVEI-AKNILPHLPENAVICNTCTVS 119 (342)
T ss_pred HHHHHH-HHHHHhhCCCCCEEEEecCCC
Confidence 6 3432 346666676667899987654
No 499
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.36 E-value=0.24 Score=49.14 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=32.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
||.|||+|.+|..+|..|+.. |. +++++|.+.-....+++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~a--GVg~ItlvD~D~Ve~sNL~RQ 42 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW--GVRHITFVDSGKVSYSNPVRQ 42 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCEeccccCCcc
Confidence 689999999999999999998 65 789999775444445543
No 500
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.35 E-value=0.098 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|.+|+..|..|++. |++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCc
Confidence 46799999999999999999998 999999996543
Done!