BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011652
         (480 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/439 (81%), Positives = 395/439 (89%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           M+SSP V L TALDQ+GIRVSPEIVEDVL +F NAG +A+ FF+WAEKQ +Y HSVRAYH
Sbjct: 1   MMSSPAVTLHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYH 60

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +MIESLAKIRQYQIMWDL+NAM+ KRMLNVETFCIIMRKYAR QK+EEAVYTFNVM+KY 
Sbjct: 61  TMIESLAKIRQYQIMWDLINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYD 120

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           V  NLAAFNGL SALCKSKNVRKAQEIFD  KDRF+PDSKTY+ILLEGWGK PNLP+ARE
Sbjct: 121 VPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKARE 180

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           IFREMVD GC+PDIVTYGIMVD+LCKAGRVDEAL IVK MD T+C+PTSFIYSVL+HTYG
Sbjct: 181 IFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYG 240

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           +ENRIEDAVDTFL MEKNG+ ADVA YNALIGAFCK NKFKNVYRVL +M+ KG+ PNSR
Sbjct: 241 IENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSR 300

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           T NIILN LI RGETDEA+RVFRRMIK+CE DADTYTMMIKMFC+  ELE A KVWKYMK
Sbjct: 301 TLNIILNNLIARGETDEAFRVFRRMIKVCEPDADTYTMMIKMFCERNELEMALKVWKYMK 360

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            K F+PSMHTFSVLINGLC++G VS +CV+LEDMIEKGIRPSG TFG+LR LLIKEGRED
Sbjct: 361 KKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGRED 420

Query: 462 VLKFLQEKMNLLVKEPLCD 480
           VL+FLQ+K+N+L+KEPL D
Sbjct: 421 VLEFLQQKINVLIKEPLWD 439


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/458 (77%), Positives = 404/458 (88%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           +S E   E  D  K I KIM+S PK+ LDT+L +SGIRVSP +VE+VL++F NAG LA+ 
Sbjct: 3   SSGEIIKETADPTKRICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQ 62

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142
           FF+WA KQ+NY HS+RAYH+MIESLAKIRQYQIMWDLVN MR+ ++LNVETFCIIMRKYA
Sbjct: 63  FFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYA 122

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
           R QKV+EAVYTFN+M+KY V  NLAAFN LLSALCKSKNV KAQEIF+ MKD+FIPDSKT
Sbjct: 123 RSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKT 182

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           YSILLEGWGK PNLP+AREIFREMVD GC+PDIVTYGIMVD+LCKAGRVDEA+GIVK MD
Sbjct: 183 YSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMD 242

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           S+VC+PTSFIYSVLVHTYG+ENRIEDAV TFL+ME+N I ADVA+YNALIGAFCK NK K
Sbjct: 243 SSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLK 302

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382
           N YRVL +M+ KG+ PNSRTCNIILN LI  G+TDEA+RVFRRMIK+C+ DADTYTMMIK
Sbjct: 303 NAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTMMIK 362

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           MFC+  +LE A KVWKYM+LK+F+PSMHTFSVLINGLC KG  S +C+LLE+MIEKGIRP
Sbjct: 363 MFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRP 422

Query: 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           S  TFGKL++LLIKEGREDVL+FLQEKMNLLVKEPLCD
Sbjct: 423 SSVTFGKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCD 460


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/439 (79%), Positives = 396/439 (90%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           M+SS  V LDTALDQSG+RVS +IVEDVL+KF NAG +A+ FF+WAEKQ++Y HSV+A+H
Sbjct: 1   MMSSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFH 60

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           ++I+SLAKIRQYQ+MWD+V  M++KRM+NVETFCIIMRKYAR QKVEEAVYTFN+M KY 
Sbjct: 61  TVIDSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYD 120

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           V  NLAAFNGLLSALCKSKNVRKAQEIFD +KDRF+PDSKTYSILLEGWGKDPNLP+ARE
Sbjct: 121 VPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKARE 180

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           IFREMV  GC PDIVTYGIMVDVLCKAGRVDEALGIV  MDSTVC+PT FIYSVLVHTYG
Sbjct: 181 IFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYG 240

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           +ENRIEDAV TFLEME NGI  DVA+YNALIGAFCKAN+ KNVYRVL +M+ KGV PNSR
Sbjct: 241 IENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSR 300

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           T NIIL+ LIGRGETDEAYRVF RMIK+CE DADTYTMMIKMFC+  EL+KA KVWKYMK
Sbjct: 301 TFNIILSSLIGRGETDEAYRVFLRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMK 360

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           LKRF+PSMHTF VLINGLC+KG V+ +CVLLE+MIEKGIRPSG TFG+LR+LLIKEGRED
Sbjct: 361 LKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGRED 420

Query: 462 VLKFLQEKMNLLVKEPLCD 480
           VLKFLQ+K+N+LV +PL +
Sbjct: 421 VLKFLQKKINVLVNDPLWE 439


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/468 (73%), Positives = 410/468 (87%), Gaps = 2/468 (0%)

Query: 15  CISFL--RRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           C SFL  R Y+SSE   +  D AK+ISK+++SSP++VLD+ALDQSG+RVS E+VEDVL +
Sbjct: 14  CKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNR 73

Query: 73  FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
           FRNAG L + FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+NAMR K+MLNVE
Sbjct: 74  FRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVE 133

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TFCI+MRKYAR QKV+EA+Y FNVM+KY +  NL AFNGLLSALCKSKNVRKAQE+F+ M
Sbjct: 134 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 193

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +DRF PDSKTYSILLEGWGK+PNLP+ARE+FREM+D GC+PDIVTY IMVD+LCKAGRVD
Sbjct: 194 RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVD 253

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EALGIV+SMD ++C+PT+FIYSVLVHTYG ENR+E+AVDTFLEME++G+ ADVA++N+LI
Sbjct: 254 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 313

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372
           GAFCKAN+ KNVYRVLK+M SKGV PNS++CNIIL  LI RGE DEA+ VFR+MIK+CE 
Sbjct: 314 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP 373

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           DADTYTM+IKMFC+  E+E A KVWKYM+ K   PSMHTFSVLINGLC++     +CVLL
Sbjct: 374 DADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLL 433

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           E+MIE GIRPSG TFG+LR+LLIKE REDVLKFL EKMN+LV EPLCD
Sbjct: 434 EEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPLCD 481


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/468 (73%), Positives = 410/468 (87%), Gaps = 2/468 (0%)

Query: 15  CISFL--RRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           C SFL  R Y+SSE   +  D AK+ISK+++SSP++VLD+ALDQSG+RVS E+VEDVL +
Sbjct: 50  CKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNR 109

Query: 73  FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
           FRNAG L + FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+NAMR K+MLNVE
Sbjct: 110 FRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVE 169

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TFCI+MRKYAR QKV+EA+Y FNVM+KY +  NL AFNGLLSALCKSKNVRKAQE+F+ M
Sbjct: 170 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 229

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +DRF PDSKTYSILLEGWGK+PNLP+ARE+FREM+D GC+PDIVTY IMVD+LCKAGRVD
Sbjct: 230 RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVD 289

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EALGIV+SMD ++C+PT+FIYSVLVHTYG ENR+E+AVDTFLEME++G+ ADVA++N+LI
Sbjct: 290 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 349

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372
           GAFCKAN+ KNVYRVLK+M SKGV PNS++CNIIL  LI RGE DEA+ VFR+MIK+CE 
Sbjct: 350 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP 409

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           DADTYTM+IKMFC+  E+E A KVWKYM+ K   PSMHTFSVLINGLC++     +CVLL
Sbjct: 410 DADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLL 469

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           E+MIE GIRPSG TFG+LR+LLIKE REDVLKFL EKMN+LV EPLCD
Sbjct: 470 EEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPLCD 517


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/480 (71%), Positives = 413/480 (86%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIR 60
           MI++ + ++++ S      R Y+SSE   +  D AK+ISK+++SSP++V+D+ALDQSG+R
Sbjct: 3   MIRILNRQSRLCSKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVIDSALDQSGLR 62

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           VSPE+VEDVL +FRNAG LA+ FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+
Sbjct: 63  VSPEVVEDVLYRFRNAGLLAYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLI 122

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
           NAM  K+MLNVETFCI+MRKYAR QKV+EA+Y FNVM+KY +  NL AFNGLLSALCKSK
Sbjct: 123 NAMMKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSK 182

Query: 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           NVRKAQEIF+ M+DRF PDSKTYSILLEGWGK+PNLP+ARE+FREMVD G  PDIVTY I
Sbjct: 183 NVRKAQEIFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSI 242

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           MVD+LCKAGRVDEALGIV+SMD ++C+PT+FIYSVLVHTYG E R+E+AVDTFLEME++G
Sbjct: 243 MVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSG 302

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           + ADVA++N+LIGAFCK N+ KNVYRVLK+M SKGV PNS++CNIIL  LI RGE DEA+
Sbjct: 303 MKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAF 362

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
            VFR+MIK+CE DADTYTMMIKMFC+  E+E A KVWKYM+ K   PSMHTFSVLINGLC
Sbjct: 363 DVFRKMIKVCEPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLC 422

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           ++     +CVLLE+MIE GIRPSG TFG+LR+LL+KE REDVLKFL EKMN+LV EPLCD
Sbjct: 423 EEPNTQKACVLLEEMIEMGIRPSGATFGRLRQLLLKEDREDVLKFLNEKMNVLVNEPLCD 482


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/439 (77%), Positives = 388/439 (88%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           M++   + L+TALDQ+GIR+SPEI E VL +F NAG LA+ FF+WA KQ+NY HSVRAYH
Sbjct: 1   MMTCHTLALETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYH 60

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           SMIESLAKIRQYQ++WDLVNAMR K +LNVE FCIIMRKYAR QKVEEAVYTFNVM+KY 
Sbjct: 61  SMIESLAKIRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYN 120

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           +  N+AAFNGLLSALCKSKNVRKAQEIFD MKD+F+PDSKTYSIL+EGWG+ PNLP+ARE
Sbjct: 121 MKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKARE 180

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           I+REM+D+GC PD VTY IMVDVLCKAGRVDEA+ IVK MD   C+P+SFIYSVLVHTYG
Sbjct: 181 IYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYG 240

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           VENRIEDAV TFLEME+NG++ADVA YNALI AFCKANK KNVYRVLKDM+ KGV PNSR
Sbjct: 241 VENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSR 300

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           TCNII+N LIGRGETDEA+++FRRMIK+CE D D+YTM+IKMFC   EL+ A K+WKYMK
Sbjct: 301 TCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCGRKELDMALKIWKYMK 360

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            K+F+PSMHTFSVLINGLC  G  + +CVLLE+MIEKGIRPSG TFG+LR LLIKEGR+D
Sbjct: 361 KKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKD 420

Query: 462 VLKFLQEKMNLLVKEPLCD 480
           VLKFLQEKMNLLVKEPLCD
Sbjct: 421 VLKFLQEKMNLLVKEPLCD 439


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/448 (74%), Positives = 390/448 (87%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           +A++ + K+M++ P + LDTAL+Q+G+RVSP++VE+VL++F NAG  AF FF+WAEKQ+ 
Sbjct: 14  EASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRG 73

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           Y HS+RAYH MIESLAKIRQYQI+WDLV+AMR K MLNVETFCI+MRKYAR  KV+EAVY
Sbjct: 74  YSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEAVY 133

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
           TFNVM KY V  NLAAFNGLLSALCKS NVRKAQEIFD MK +F+PD K+YSILLEGWGK
Sbjct: 134 TFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGK 193

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
            PNLPRARE+FREMV+ GC+PD+VTYGIMVDVLCKAGRVDEA+ +VK MD   CRPTSFI
Sbjct: 194 APNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFI 253

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YSVLVHTYGVE+RIEDA+DTFLEM K GI ADV  YNALIGAFCK NKFKNV+RVLK+M 
Sbjct: 254 YSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEME 313

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392
           S GVAPNSRTCN+I++ +IG+G+TD A+RVF RMIKLCE DADTYTMMIKMFC+  ELE 
Sbjct: 314 SNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEM 373

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A K+WKYMK K+F+PSMHTFS LI GLC+K   + +CV++E+MIEKGIRPS  TFG+LR+
Sbjct: 374 ALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQ 433

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           LLIKEGREDVLKFL EKMNLLVKEPL D
Sbjct: 434 LLIKEGREDVLKFLHEKMNLLVKEPLYD 461


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/481 (64%), Positives = 382/481 (79%), Gaps = 7/481 (1%)

Query: 7   SRNKMISGCISFLRRYNS----SEPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIRV 61
           SR+  +     F+R + S    S+ + ++ D AK + K+++S  K   L+  LD S +RV
Sbjct: 6   SRHTSMEARKVFVRMFTSGVGGSDVAVDSFDPAKRLCKLIISCQKASGLELELDHSDLRV 65

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ--NYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +P++ E VLE+  NAG LA+ FF+WA KQ+     H++R+YH+++ SLAKIRQYQ+MWD+
Sbjct: 66  TPDVAERVLERLDNAGMLAYRFFEWARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDV 125

Query: 120 VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           V  MR + ++NVETF IIMRKYAR QK +EAVYTFN+M+KYGV  NLAAFN LL ALCKS
Sbjct: 126 VAIMRREGVVNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKS 185

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           KNVRKAQEIFD M  RF PD+KTYSILLEGWGK PNLP+ RE++ EM+D GC PDIVTYG
Sbjct: 186 KNVRKAQEIFDKMNGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYG 245

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           IMVD LCK GRV+EA+ +V+ M S  C+PT+FIYSVLVHTYGVE RIEDAV TFL+MEK+
Sbjct: 246 IMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKD 305

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           GI+ DV +YNAL+ AFCK  KF+N +RV+ DM   G+APNSRT NIILN LI  G+ DEA
Sbjct: 306 GIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEA 365

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           YRVFRRMIK C+ D+DTYTMMIKMFC+   +E A KVWKYM+LK+F+PSMHTFSVLINGL
Sbjct: 366 YRVFRRMIKRCQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGL 425

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLC 479
           CDKG VS +CVLLEDMIEKGIRP G TFGKLR+LL+KEGR+DVL+FL +KM +L++EPL 
Sbjct: 426 CDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMKILIQEPLF 485

Query: 480 D 480
           D
Sbjct: 486 D 486


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/470 (65%), Positives = 374/470 (79%), Gaps = 7/470 (1%)

Query: 18  FLRRYNSSEPSTEAL----DAAKSISKIMLSSPKV-VLDTALDQSGIRVSPEIVEDVLEK 72
           F+R  +S     +AL    D AK + K+++S  K   ++  LD SG+RV+P++ E VLE+
Sbjct: 15  FVRMLSSGVGGGDALVDTADPAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLER 74

Query: 73  FRNAGTLAFCFFKWAEKQQ--NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN 130
             NAG LA+ FF+WA +Q+     H+VR+YH+++ SLAKIRQYQ+MWD+V  MR +  +N
Sbjct: 75  LDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVN 134

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           VETF IIMRKYAR QKV+EAVYTFNVM+KYGV  NLAAFN LL ALCKSKNVRKAQEIFD
Sbjct: 135 VETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFD 194

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
            M  RF PD+KTYSILLEGWG+ PNLP+ RE++ EM+D GC PDIVTYGIMVD LCK GR
Sbjct: 195 KMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGR 254

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V+EA+ +V+ M S  C+PT++IYSVLVHTYGVE RIEDAV TFL+MEK+GI+ D+ +YNA
Sbjct: 255 VEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNA 314

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           L+ AFCKA KF+N +RVL DM   G+  NSRT NIILN LI  G  DEAY+VFRRMIK C
Sbjct: 315 LVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCC 374

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D DTYTMMIKMFC+  ++E A KVWKYM+LK+F+PSMHTFSVLINGLCDK  VS +CV
Sbjct: 375 QPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACV 434

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           LLEDMIEKGIRP G TFGKLR+LL+KEGR+DVL FL EKMN+L++EPL D
Sbjct: 435 LLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMNILIQEPLFD 484


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/462 (65%), Positives = 372/462 (80%), Gaps = 4/462 (0%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
             S+ + EA D AK + K+++S  +   L+  LD S +RV+P++ E VLE+  NAG LA+
Sbjct: 24  GGSDAAVEAFDPAKRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGMLAY 83

Query: 82  CFFKWAEKQQ---NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
            FF+WA KQ+      H+VR++H+++ SLAKIRQYQ+MWD+V  MR + ++NVETF IIM
Sbjct: 84  RFFEWARKQRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVETFGIIM 143

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP 198
           RKYAR QKV+EAVYTFNVM+KYGV  NLAAFN LL ALCKSKNVRKAQEIF+ M  RF P
Sbjct: 144 RKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSP 203

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D+KTYSILLEGWG+ PNLP+ R+++ +M+D GC PDIVTYGIMVD LCK GRV+EA+ +V
Sbjct: 204 DAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVV 263

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + M S  C+PT+FIYSVLVHTYGVE RIEDAV TFL+M+K+GI+ DV +YNAL+ AFCK 
Sbjct: 264 QDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKV 323

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378
            KF N +RV+ DM   G+ PNSRT NIILN LI  G+ DEAYRVFRRMIK C+ D+DTYT
Sbjct: 324 KKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRCQPDSDTYT 383

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           MMIKMFC+   LE A KVWKYM+LK+F+PSMHTFSVLINGLCDKG VS +CVLLEDMIEK
Sbjct: 384 MMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEK 443

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           GIRP G TFGKLR+LL+KEGR+DVL+FL +KM +L++EPL D
Sbjct: 444 GIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMKILIQEPLFD 485


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/456 (66%), Positives = 369/456 (80%), Gaps = 3/456 (0%)

Query: 28  STEALDAAKSISKIMLSSPKV-VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           S +A D +K + K+++S  K   L+  LD SG+RV+PEI E VL+   NAG LA+ FF+W
Sbjct: 34  SVDASDLSKRLCKLIISCRKASALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEW 93

Query: 87  AEKQQN--YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144
           A KQ+     H+VR+YH+++ SLAKIRQYQ+MWD+V  MR + + NVETF IIMRKYAR 
Sbjct: 94  ARKQKRGVCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARA 153

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204
           QK++EAVYTFNVM+KYGV  NLAAFN LLSALCKSKNVRKAQEIFD M +RF PD+KTYS
Sbjct: 154 QKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKMNNRFSPDAKTYS 213

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILLEGWG+ P+LP+ RE++ +M+  GC PDIVTYGIMVD LCK GRV+EA+ +V+ M S 
Sbjct: 214 ILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSR 273

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C+PT+FIYS+LVHTYGV+ RIEDAV  FL+MEK+GI+ DV +YNALI AFCK  KF+N 
Sbjct: 274 GCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENA 333

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384
           +RV+ DM   G++PNSRT NIILN LI  G+ DEAYRVFR MIK C+ D+DTYTMMIKMF
Sbjct: 334 FRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIKRCKPDSDTYTMMIKMF 393

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+  ++E A KVWKYM+LK+F+PSMHTFSVLINGLCDKG VS +CVLLEDMIEKGIRP G
Sbjct: 394 CENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPG 453

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
            TFGKLR+LL+KEGR+DVL FL EKM +L +EPL D
Sbjct: 454 STFGKLRQLLLKEGRKDVLDFLVEKMKILAQEPLFD 489


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/454 (66%), Positives = 368/454 (81%), Gaps = 3/454 (0%)

Query: 30  EALDAAKSISKIMLSSPKV-VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
           +A D AK + K+++S  K   ++  LD SG+RV+PE+ E VLE+  NAG LA+ FF+WA 
Sbjct: 34  DASDLAKRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYRFFEWAR 93

Query: 89  KQQ--NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           +Q+     H+VR+YH+++ SLAKIRQYQ+MWD+V  MR + + NVETF IIMRKYAR QK
Sbjct: 94  RQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVETFSIIMRKYARAQK 153

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
            +EAVYTFN+M++YGV  NLAAFN LL ALCKSKNVRKAQEIFD M +RF PD+KTYSIL
Sbjct: 154 FDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKTYSIL 213

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           LEGWG+ PNLP+ RE++ +M+  GC PDIVTYGIMVD LCK GRV+EA+ +V+ M S  C
Sbjct: 214 LEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGC 273

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +PT+FIYSVLVHTYGV+ RIEDAV TFL+MEK+GI+ DV +YNAL+ AFCK  KF N +R
Sbjct: 274 QPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFR 333

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           V+ DM   G++PNSRT NIILN LI  G+ DEAYRVFR MIK C+ D+DTYTMMIKMFC+
Sbjct: 334 VMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIKRCKPDSDTYTMMIKMFCE 393

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             ++E A KVWKYM+LK+F+PSMHTFSVLINGLCDKG VS +CVLLEDMIEKGIRP G T
Sbjct: 394 NDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGST 453

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           FGKLR+LL+KEGR+DVL FL EKM +L++EPL D
Sbjct: 454 FGKLRQLLLKEGRKDVLDFLVEKMKMLIQEPLFD 487


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/455 (40%), Positives = 305/455 (67%), Gaps = 3/455 (0%)

Query: 27  PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           P ++  + A+ + +++ S P+  + +ALD  G+ +SPE+V +VL    NAG LA  FF+W
Sbjct: 91  PGSDVSEVAERVCRVVSSQPEPRIASALDALGVNMSPELVAEVLRNLSNAGILALAFFRW 150

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           AE+QQ + ++  ++H++IE+L KI+Q++++W LV AMR + +L+ +TF +I+R+YAR +K
Sbjct: 151 AERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARK 210

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYS 204
           V+EAV TF  M  +G+  +L+ +N L+  L KSK V+KA  IF  MK   RF+PD KTY+
Sbjct: 211 VKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYT 270

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L+EGWG + +L   + +++EM+D G  PD+V YG ++   CK+G+ DEA+ + + M++ 
Sbjct: 271 VLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEAN 330

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P+  +Y +L++  G E R+++A+  F   + +G   +V   NA++GA+C+++KF++ 
Sbjct: 331 GCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHA 390

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           ++++ +M   G+ PN+RT +IIL  LI   + +EAY VF+RM ++ CE   +TYTMM+ M
Sbjct: 391 FKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGM 450

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC    ++ A KVWK MK K  +P MH FS LINGLC +  + ++CV  ++M++KGIRP 
Sbjct: 451 FCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPP 510

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           G+ F  L++ LI+ GR  + + +  K++ L K P 
Sbjct: 511 GQLFSNLKEALIEGGRISLAQDMALKLDTLRKTPF 545


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/454 (41%), Positives = 298/454 (65%), Gaps = 3/454 (0%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           S E    A+   K++  +P   +++ LD + + +SP ++ +VL+K  NAG LA  FF+WA
Sbjct: 87  SDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWA 146

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
           EKQ+ ++H+  +Y+ +IE+L KI+Q+ ++W+LV+ M+ K +L+ ETF +I R+YAR +KV
Sbjct: 147 EKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKV 206

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206
           +EAV +F  M+K+G    ++ FN LL  LCKS+NV+KAQE+FD MK  RF PD K+Y+IL
Sbjct: 207 KEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTIL 266

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           LEGWG+D NL +  E++REM D G  PD+VT+GI+++  CKA + DEA+ +   M++   
Sbjct: 267 LEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNI 326

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P+  ++  L++  G E R+++A++ F +++ +G   +   YNA++GA+C + K    YR
Sbjct: 327 KPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYR 386

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMF 384
           ++ +M   GV PNSRT +IIL+ LI   ++ EAY VF+RM +   CE    TY +MI+MF
Sbjct: 387 MVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMF 446

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C    ++ A ++W  MK K  +P MH FS LIN LC +  + D+C   ++M++ GIRP  
Sbjct: 447 CNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPA 506

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
             F  L++ L+ +GR+D    + EK+  L K PL
Sbjct: 507 TMFSNLKQALLDDGRKDTALLMAEKIKKLRKAPL 540


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/454 (41%), Positives = 298/454 (65%), Gaps = 3/454 (0%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           S E    A+   K++  +P   +++ LD + + +SP ++ +VL+K  NAG LA  FF+WA
Sbjct: 87  SDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWA 146

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
           EKQ+ ++H+  +Y+ +IE+L KI+Q+ ++W+LV+ M+ K +L+ ETF +I R+YAR +KV
Sbjct: 147 EKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARARKV 206

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206
           +EAV +F  M+K+G    ++ FN LL  LCKS+NV+KAQE+FD MK  RF PD K+Y+IL
Sbjct: 207 KEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTIL 266

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           LEGWG+D NL +  E++REM D G  PD+VT+GI+++  CKA + DEA+ +   M++   
Sbjct: 267 LEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNI 326

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P+  ++  L++  G E R+++A++ F +++ +G   +   YNA++GA+C + K    YR
Sbjct: 327 KPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYR 386

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMF 384
           ++ +M   GV PNSRT +IIL+ LI   ++ EAY VF+RM +   CE    TY +MI+MF
Sbjct: 387 MVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMF 446

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C    ++ A ++W  MK K  +P MH FS LIN LC +  + D+C   ++M++ GIRP  
Sbjct: 447 CNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPA 506

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
             F  L++ L+ +GR+D    + EK+  L K PL
Sbjct: 507 TMFSNLKQALLDDGRKDTALLMAEKIXKLRKAPL 540


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/455 (40%), Positives = 303/455 (66%), Gaps = 3/455 (0%)

Query: 27  PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           P     +AAK + +I+ + P+  + + LD  G+ VSPE+V +VL+   NAG LA  FF+W
Sbjct: 91  PPVGMSEAAKMVCRIVSTQPEPKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRW 150

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           AE+Q+ + ++   +H++IE+L KI+Q++++W LV  MR + +L+ +TF +I+R+YAR +K
Sbjct: 151 AERQEGFSYTAEGFHNLIEALGKIKQFRLVWSLVETMRCRGLLSKDTFKLIVRRYARARK 210

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYS 204
           V+EAV TF  M  +G+   L+ +N L+  L KSK V+KAQ I+  MK   +F+PD KTY+
Sbjct: 211 VKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYT 270

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L+EGWG + +L   + +++EM+D G  PD+V YG+++   CK+G+ DEA+ +   M+++
Sbjct: 271 VLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEAS 330

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P+  +Y +L++  G E R+++A+  F   +K+G   +V   NA++GA+C+A+KF++ 
Sbjct: 331 GCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHA 390

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           ++++ +M    V PNSRT ++IL+ LI   + +EAY +F+RM I  CE   +TYTMM+ M
Sbjct: 391 FKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGM 450

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC  G ++ A KVWK M  K  +P MH FS LINGLC +  + ++CV  ++M++KGIRP 
Sbjct: 451 FCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 510

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           G+ F  L++ L++ GR  + + +  K++ + K P 
Sbjct: 511 GQLFSNLKEALVQGGRISLAQEVALKLDAIRKTPF 545


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/449 (40%), Positives = 301/449 (67%), Gaps = 3/449 (0%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           +AA+ + +++ + P+  +   LD  G+ VSP++V +VL+   NAG LA  FF+WAE+QQ 
Sbjct: 90  EAAERVCRVVSAQPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQG 149

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           + +S   +H++IE+L KI+Q++++W LV AMR +  L+ +TF II+R+YAR +KV+EAV 
Sbjct: 150 FRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVE 209

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYSILLEGW 210
           TF  M  +G+  +L+ +N L+  L KSK V+KA  IF  MK   RFIPD KTY++L+EGW
Sbjct: 210 TFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGW 269

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           G + +L   + +++EM+D G  PD+V YG+++   CK+G+ DEA+ +   M+ + C P+ 
Sbjct: 270 GHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSP 329

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            +Y +L++  G   R+++A+  F   +++G   +V   NA+IGA+C+A +F + ++++ +
Sbjct: 330 HVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDE 389

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M   G+ PN+RT +IILN LI   + +EAY +F+RM +  CE + +TYTMM+ MFC    
Sbjct: 390 MRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNER 449

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++ A KVWK MK K  +P MH FS LINGLC +  + ++CV  ++M++KGIRP G+ F  
Sbjct: 450 VDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSN 509

Query: 450 LRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           L++ L++ GR  + + + +++ +L + P+
Sbjct: 510 LKEALVEGGRITLAQEVTQRLEMLRRTPM 538


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/449 (40%), Positives = 300/449 (66%), Gaps = 3/449 (0%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           +AA+ + +++ + P+  +   LD  G+ VSP++V +VL+   NAG LA  FF+WAE+QQ 
Sbjct: 90  EAAERVCRVVSAQPEHRIAPVLDALGVTVSPQLVAEVLKNLSNAGILALAFFRWAERQQG 149

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           + +S   +H++IE+L KI+Q++++W LV AMR +  L+ +TF II+R+YAR +KV+EAV 
Sbjct: 150 FRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKIIVRRYARARKVKEAVE 209

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYSILLEGW 210
           TF  M  +G+  +L+ +N L+  L KSK V+KA  IF  MK   RFIPD KTY++L+EGW
Sbjct: 210 TFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGW 269

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           G + +L   + +++EM+D G  PD+V YG+++   CK+G+ DEA+ +   M+ + C P+ 
Sbjct: 270 GHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSP 329

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            +Y +L++  G   R+++A+  F   +++G   +V   NA+IGA+C+A +F + ++++ +
Sbjct: 330 HVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDE 389

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M   G+ PN+RT +IILN LI   + +EAY +F+RM +  CE + +TYTMM+ MFC    
Sbjct: 390 MRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNER 449

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++ A KVWK MK K  +P MH FS LINGLC    + ++CV  ++M++KGIRP G+ F  
Sbjct: 450 VDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSN 509

Query: 450 LRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           L++ L++ GR  + + + +++ +L + P+
Sbjct: 510 LKEALVEGGRITLAQEVTQRLEMLRRTPM 538


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/455 (39%), Positives = 303/455 (66%), Gaps = 3/455 (0%)

Query: 27  PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           P     +AAK + +I+ + P+  + + LD  G+ +SPE+V +VL+   NAG LA  FF+W
Sbjct: 95  PPVGISEAAKMVCRIVSTQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRW 154

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           AE+Q+ + ++   +H++IE+L KI+Q++++W LV  MR + +L+ +TF +I+R+YAR +K
Sbjct: 155 AERQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARK 214

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYS 204
           V+EAV TF  M  +G+   L+ +N L+  L KSK V+KAQ I+  MK   +F+PD KTY+
Sbjct: 215 VKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYT 274

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L+EGWG + +L   + +++EM+D G  PD+V YG+++   CK+G+ DEA+ +   M+++
Sbjct: 275 VLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEAS 334

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P+  +Y +L++  G E R+++A+  F + +K+G   +V   NA++GA+C+A+KF++ 
Sbjct: 335 GCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHA 394

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           ++++ +M    + PNSRT ++IL+ LI   + +EAY VF+RM +  CE   +TYTMM+ M
Sbjct: 395 FKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGM 454

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC  G ++ A  VWK M  +  +P MH FS LINGLC +  + ++CV  ++M++KGIRP 
Sbjct: 455 FCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 514

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           G+ F  L++ L++ GR  + + +  K++ + K P 
Sbjct: 515 GQLFSNLKEALVEGGRISLAQEMASKLDAIRKTPF 549


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/455 (39%), Positives = 302/455 (66%), Gaps = 3/455 (0%)

Query: 27  PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           P  +  + A+ + +++ + P+  +  ALD  G  VSP++V +VL+   NAG LA  FF+W
Sbjct: 109 PGLDVSEEAERVCRVLSTLPEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRW 168

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           AE+QQ + ++  ++H++IE+L KI+Q++++W LV AMR + +L+ +TF +I+R+YAR +K
Sbjct: 169 AERQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARK 228

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYS 204
           V+EAV TF  M  +G+  +L+ +N L+  L KSK V+KA  IF  MK   RF+PD KTY+
Sbjct: 229 VKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYT 288

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L+EGWG + +L   + +++EM+D G  PD+V YG+++   CK+G+ DEA+ + + M++ 
Sbjct: 289 VLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETN 348

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P+  +Y +L++  G E R+++A+  F   + +G   +V   NA++GA+C+++KF++ 
Sbjct: 349 GCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHA 408

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKM 383
           ++++ +M   G+ PNSRT +IIL+ LI   + +EAY VF+ M K  CE   +TYTMM+ M
Sbjct: 409 FKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGM 468

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC    ++ A KVW  MK K  +P MH FS LINGLC +  + ++C   ++M+++GIRP 
Sbjct: 469 FCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPP 528

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           G+ F  L++ LI+ GR  + + +  K++ L K P+
Sbjct: 529 GQLFSNLKEALIEGGRISLAQEMALKLDELRKTPM 563


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/444 (41%), Positives = 291/444 (65%), Gaps = 4/444 (0%)

Query: 31  ALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           A D  K + K++ +     +++ L+ + + VSP +V +VL+K  N+G +A  FF+WAEKQ
Sbjct: 80  AQDTGK-LCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEKQ 138

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +++S   Y+++IE+L KI+Q++++W+LVN MR+K +L  ETF +I R+YAR +KV+EA
Sbjct: 139 KGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEA 198

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           V TF  M+K+G+   L+ FN LL ALCKS++V +AQE+FD MKDR F PD K+Y+ILLEG
Sbjct: 199 VETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEG 258

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           WG++ NL R  E++REM D G  PD VTYGI+++  CKA R D A+ +   M++  C PT
Sbjct: 259 WGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPT 318

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             IY  L++  G E R+ +A+  F   + +G   +   YNA++G++C++ +  + YR++ 
Sbjct: 319 PHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVD 378

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQG 387
           +M   GV P +RT +IIL+ LI    T EAYRVF+ M     CE    TY ++++MFC  
Sbjct: 379 EMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNE 438

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
             ++ A +VW  MK K  +P MH FS LIN LC +  + ++C    +M++ GIRP    F
Sbjct: 439 ERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMF 498

Query: 448 GKLRKLLIKEGREDVLKFLQEKMN 471
             L++ L+ EG++D++  L +K++
Sbjct: 499 SNLKQTLLDEGKQDMVLILAQKLD 522


>gi|302141771|emb|CBI18974.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/233 (78%), Positives = 209/233 (89%)

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AGRVDEA+GIVK MDS+VC+PTSFIYSVLVHTYG+ENRIEDAV TFL+ME+N I ADVA+
Sbjct: 76  AGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAV 135

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YNALIGAFCK NK KN YRVL +M+ KG+ PNSRTCNIILN LI  G+TDEA+RVFRRMI
Sbjct: 136 YNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI 195

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K+C+ DADTYTMMIKMFC+  +LE A KVWKYM+LK+F+PSMHTFSVLINGLC KG  S 
Sbjct: 196 KVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASK 255

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           +C+LLE+MIEKGIRPS  TFGKL++LLIKEGREDVL+FLQEKMNLLVKEPLCD
Sbjct: 256 ACILLEEMIEKGIRPSSVTFGKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCD 308



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 161/358 (44%), Gaps = 70/358 (19%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIR 60
           M+K+ + +NK   G     R  +S E   E  D  K I KIM+S PK+ LDT+L +SGIR
Sbjct: 1   MLKIQNFQNKWSLGWNILARMCSSGEIIKETADPTKRICKIMISCPKLELDTSLSESGIR 60

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           VSP +VE+VL++F NAG +              + +V     M  S+ K   +       
Sbjct: 61  VSPIVVENVLKRFENAGRV--------------DEAVGIVKEMDSSVCKPTSF------- 99

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
                        + +++  Y    ++E+AVYTF  M++  +  ++A +N L+ A CK  
Sbjct: 100 ------------IYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVN 147

Query: 181 NVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            ++ A  + + M  + I P+S+T +I+L       +   A  +FR M+   C+PD  TY 
Sbjct: 148 KLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKV-CDPDADTYT 206

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           +M+ + C+  +++ AL + K M     R   F+ S  +HT+ V                 
Sbjct: 207 MMIKMFCENDKLEMALKVWKYM-----RLKQFVPS--MHTFSV----------------- 242

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
                      LI   CK         +L++M  KG+ P+S T   +   LI  G  D
Sbjct: 243 -----------LINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLLIKEGRED 289


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/445 (40%), Positives = 287/445 (64%), Gaps = 3/445 (0%)

Query: 35  AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE 94
           A  I KI+       ++T L+++ +++SP ++E+VL+K  NAG LA   FKWAE Q+ ++
Sbjct: 68  ADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFK 127

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           H+   Y+++IESL KI+Q++++W+LV+ M+ K++L+ +TF +I R+YAR +KV+EA+  F
Sbjct: 128 HTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISRRYARARKVKEAITAF 187

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
           + M+ YG     + FN +L  L KS+NV  AQ++FD MK  RF PD K+Y+ILLEGWG++
Sbjct: 188 HKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQE 247

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            NL R  E++ EM D G  PD+V YGI+++  CKA + DEA+     M+   C+P+  I+
Sbjct: 248 LNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIF 307

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             L++  G E ++ DA++ F   + +G   +   YNAL+GA+C + + ++ ++ + +M S
Sbjct: 308 CSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRS 367

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           KG+ PN+RT +IIL+ LI    T EAY V+++M   CE    TY +M++MFC    L+ A
Sbjct: 368 KGIGPNARTYDIILHHLIRMQRTKEAYEVYQKMS--CEPTVSTYEIMVRMFCNKERLDMA 425

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            K+W  MK K  +P MH FS LI  LC +  + ++C    +M++ GIRP G  F +L++ 
Sbjct: 426 IKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQT 485

Query: 454 LIKEGREDVLKFLQEKMNLLVKEPL 478
           L+ EGR+D +  L  KM+ L K  L
Sbjct: 486 LLDEGRKDKVADLAVKMDRLRKTQL 510


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/460 (40%), Positives = 292/460 (63%), Gaps = 6/460 (1%)

Query: 23  NSSEPSTEALDA---AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL 79
           +S E    A DA   A+ I KI+       ++T L+++ +++SP ++E+VL+K  NAG L
Sbjct: 51  SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
           A   FKWAE Q+ ++H+   Y+++IESL KI+Q++++W LV+ M+ K++L+ ETF +I R
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIP 198
           +YAR +KV+EA+  F+ M+++G     + FN +L  L KS+NV  AQ++FD MK  RF P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D K+Y+ILLEGWG++ NL R  E+ REM D G  PD+V YGI+++  CKA + +EA+   
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFF 290

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M+   C+P+  I+  L++  G E ++ DA++ F   + +G   +   YNAL+GA+C +
Sbjct: 291 NEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWS 350

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378
            + ++ Y+ + +M  KGV PN+RT +IIL+ LI    + EAY V++ M   CE    TY 
Sbjct: 351 QRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS--CEPTVSTYE 408

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           +M++MFC    L+ A K+W  MK K  +P MH FS LI  LC +  + ++C    +M++ 
Sbjct: 409 IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDV 468

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           GIRP G  F +L++ L+ EGR+D +  L  KM+ L K  L
Sbjct: 469 GIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKTQL 508


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/449 (40%), Positives = 289/449 (64%), Gaps = 3/449 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           ++  ++I +++  +P   ++  L  +  +VSP +V +VL++  NAG LA  FFKWAEKQ+
Sbjct: 82  IEDTRNICRLLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQK 141

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
            + ++  +Y+++I+SL KI+Q+ ++W+LVN M+ K +L  ETF +I R+YAR  KV+EA+
Sbjct: 142 GFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGKVKEAM 201

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGW 210
            TF  M+K+G+      FN LL  L KS+ V  AQ +FD MK  RF+PD K+Y+ILLEGW
Sbjct: 202 NTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGW 261

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           G++ NL +  E++REM D G  PD+VTYGI+++  CK  + D+A+ + + M+S  C+P+ 
Sbjct: 262 GQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSP 321

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            I+  L++  G   R+ +A++ F   + +G   +   YNA++GA+C + +  + YR++ +
Sbjct: 322 HIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDE 381

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIKMFCQGG 388
           M   GV PNSRT +IIL+ LI   +T EA+ VF +M   + CE    TY ++++MFC   
Sbjct: 382 MRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMD 441

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++E A KVW  MK K   P MH FS+LIN LC +  +  +C   ++M++ GIRP    F 
Sbjct: 442 KVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFS 501

Query: 449 KLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            L++ LI++GR+D +  L +K++ L K P
Sbjct: 502 HLKQALIEDGRKDTVVLLAQKIDKLRKTP 530


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/422 (41%), Positives = 277/422 (65%), Gaps = 2/422 (0%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           + VSP +V + L+K  NAG LA  FF+WAEKQ+ +++S  +YH++IESL KI+Q+ ++W+
Sbjct: 1   MEVSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWN 60

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           LV  M+ K +LN ETF +I R+YAR +KV+EAV  F  M+K+G+    +  N LL  LCK
Sbjct: 61  LVTDMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCK 120

Query: 179 SKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           S+ V +AQ +FD M  R F+ D K+Y+ILLEGWG++ NL R  E++ EM D G  PD+VT
Sbjct: 121 SRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVT 180

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           YGI+++  CK+ R D+A+ +   M++  C+P+  IY  L++  G E R+ +A++ F   +
Sbjct: 181 YGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSK 240

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
            +G + +   YNA++GA+C + +  +V R + +M   GV P++RT +IIL+ LI  G+T 
Sbjct: 241 ASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTK 300

Query: 358 EAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            AY VF++M  + C+    TY ++++MFC    ++ A KVW  MK K  +P MH FS LI
Sbjct: 301 IAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLI 360

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           N LC +  + ++C+  ++M++ GIRP  + F  L++ L+ EG++D +   + K++ L K 
Sbjct: 361 NSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRKA 420

Query: 477 PL 478
           PL
Sbjct: 421 PL 422



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 163/366 (44%), Gaps = 19/366 (5%)

Query: 9   NKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVED 68
           NK     IS  RRY  +    EA+DA   + K  L      ++  LD        E  + 
Sbjct: 72  NKETFALIS--RRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVERAQL 129

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           V +K    G +A                +++Y  ++E   + +    + ++ N M+ +  
Sbjct: 130 VFDKMNKRGFVA---------------DIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGF 174

Query: 129 -LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +V T+ I++  + + ++ ++A+  F+ M+      +   +  L++ L   K + +A E
Sbjct: 175 EPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALE 234

Query: 188 IFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
            F+  K   F+P++ TY+ ++  +     +   +    EM   G  P   TY I++  L 
Sbjct: 235 FFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLI 294

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           +AG+   A  + + M    C+P+   Y ++V  +  E+R++ A+  + +M+  GIL  + 
Sbjct: 295 RAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMH 354

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           M++ LI + C  +K        ++M   G+ P ++  + +   L+  G+ D      R++
Sbjct: 355 MFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKL 414

Query: 367 IKLCEA 372
            KL +A
Sbjct: 415 DKLRKA 420


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/448 (39%), Positives = 280/448 (62%), Gaps = 4/448 (0%)

Query: 35  AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE 94
           A++I +I+ ++P+  +D +L    + VSPE+V  VL K  NAG LA  FF+WAEKQQ + 
Sbjct: 58  AETICRILSTTPESPVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFN 117

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           H+   +H++IE+L KIRQ++++W+LV+ M+ +++LN +TF +I R+Y R + ++EA+ TF
Sbjct: 118 HNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTF 177

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGK 212
             M+KYG+   ++ FN L+  LCKSK +V KAQE+FD M+     P+ K+Y+IL+EGW +
Sbjct: 178 ERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQ 237

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             NL +  E+ REM D G  PD+VTYGI+++  CKA + DEA+GI   M S    P+  I
Sbjct: 238 QQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHI 297

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y   +   G  +R+++A + F + + +G   +   YNA++ A+C + +  + YR++ +M 
Sbjct: 298 YCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMK 357

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGEL 390
             G+ PN+RT +IIL  LI  G T EAY VF+RM     CE    TY +M++MFC   +L
Sbjct: 358 ELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQL 417

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + A  VW  MK K  +P +H FS LI  LC +  + D+C   + M++ GIRP+   F   
Sbjct: 418 DMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMFSAF 477

Query: 451 RKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           ++ L+  G E+ +    +K++ L   PL
Sbjct: 478 KRALMAAGMENTVIHFAKKVDKLRNTPL 505


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/459 (38%), Positives = 286/459 (62%), Gaps = 5/459 (1%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           N +E   E  DAA+ I  ++ +      D  L+ + I+VSP +V +VL++  NAG +A  
Sbjct: 85  NPAETKLEQ-DAAR-ICTLLSTHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALS 142

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142
           FF WAEKQ+ ++++  +Y+++IE+L KI+Q++++  LVN M+++++LN +TF +I R++A
Sbjct: 143 FFTWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTFALISRRHA 202

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           R +KVEEA+  F  M+++G     + FN LL  LCKS++V KA ++FD MK R F+PD K
Sbjct: 203 RARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIK 262

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           +Y+ILLEGWGK+ NL R  E++ EM   G  PD+VTYGI++   CKA + D A+ +   M
Sbjct: 263 SYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEM 322

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
           ++  C+PT  +Y  L++  G E R+ +A++ F   +  G   +   YN+L+GA+C + + 
Sbjct: 323 EAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRI 382

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTM 379
            + ++V+ +M      PNSRT +IIL+ LI    T+EAY  F++M     CE    TY +
Sbjct: 383 DDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEI 442

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +++MFC    ++ A +VW  MK K  +P MH +S LI  LC K  + ++C   ++M++ G
Sbjct: 443 IVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAG 502

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           IRP  + F  L++ L+ EG+ D    L  K+N L   PL
Sbjct: 503 IRPPAKMFSNLKQALLDEGKNDEALNLARKINKLRGTPL 541


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  357 bits (917), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 181/478 (37%), Positives = 287/478 (60%), Gaps = 10/478 (2%)

Query: 5   YHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPE 64
           +HS     +  ++F        P  EA      I +I+ ++P   +D  L     + SPE
Sbjct: 34  HHSNGPSKTHTLAFHTAQPRPTPDAEA------ICRILSTTPASTVDACLAAVPAKPSPE 87

Query: 65  IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
           +V +VL K  NAG LA  FF+WAEKQ  ++H+  A+H++IE+L KIRQ++++W LVN M+
Sbjct: 88  LVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMK 147

Query: 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
            +++L  +TF ++ R+YAR +K +EA+ TF  M+ YG+  +++ FN L+  LCKSK+V +
Sbjct: 148 QRKLLTSDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEE 207

Query: 185 AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A E+FD M+  R  PD K+Y+ILLEGW +  NL +  E+ REM D G   D+V YGI+++
Sbjct: 208 AHEVFDKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMN 267

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
             CKA + DEA+G+   M +   RP+  +Y  L++  G + R+++A++ F   + +G + 
Sbjct: 268 AHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVP 327

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +   YNA++GA+C + +  + YR++ +M   G+ PNSRT +I+L+ LI     +EA  VF
Sbjct: 328 EAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVF 387

Query: 364 RRMIK---LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           RRM      CE    TY +M++MFC    L+ A  VW  MK K  +P MH FS L+  LC
Sbjct: 388 RRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALC 447

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
            +  + ++C   ++M++ GIRP  + F  L++ L+  G E V      K++ L K PL
Sbjct: 448 HESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAMHFTLKIDKLRKSPL 505


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 249/444 (56%), Gaps = 6/444 (1%)

Query: 33  DAAKSISKIMLSS--PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           D    IS+++     P   L+ +L+    ++S  +VE VL++ +N G  A  FF WA+  
Sbjct: 45  DLVNEISRLLSDHRYPHHDLELSLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAKSI 104

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVE 148
             ++HSV ++H ++E L   +Q+ I+WD +  MR      +N E F +I R Y++    +
Sbjct: 105 PGFQHSVMSFHILVEILGSCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANLPD 164

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
            A+ +FN M ++GV   +   + LL  LCK K+V++AQ++F   K+RF   +KTYSIL+ 
Sbjct: 165 GAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAKTYSILIS 224

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           GWG+  +  +A ++F+ M++ GC  D++ Y  ++  LCK GRVDEA  I   M S    P
Sbjct: 225 GWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEP 284

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            +F YS+ +H+Y   + ++ A     +M +  +L +V  YN +I   CK    +  Y++L
Sbjct: 285 DAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLL 344

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387
            +M S+GV P++ + N I        E + A R+  RM K +C  D  TY M++K+  + 
Sbjct: 345 DEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRI 404

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGET 446
           G  +K  +VW+ M  K+F PS+ T+SV+I+G C  KG + ++C   E MI++GI P   T
Sbjct: 405 GRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTT 464

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
              LR  L+  G  D ++ L  KM
Sbjct: 465 VEMLRNRLLGLGFIDHIEILAAKM 488


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/444 (34%), Positives = 247/444 (55%), Gaps = 6/444 (1%)

Query: 33  DAAKSISKIMLSS--PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           D    IS+++     P   L+ +L+    ++S  +V+ VL++  N G  A  FF WA+  
Sbjct: 45  DLVNEISRLLSDHRYPHHDLELSLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKSI 104

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVE 148
             ++HSV ++H ++E L   +Q+ I+WD +  MR      +N E F +I R Y++    +
Sbjct: 105 PGFQHSVMSFHILVEILGSCKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQANLPD 164

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
            A+ +FN M ++G+   +  F+ LL  LCK+K+V++AQ+ FD  K+RF+  +KTYSIL+ 
Sbjct: 165 GAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILIS 224

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           GWG   +  +A E+F+ M++ GC  D++ Y  ++  LCK G VDEA  I   M S    P
Sbjct: 225 GWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEP 284

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            +F YS+ +H+Y   + ++ A+    +M +  IL +V  YN +I   CK    +  Y +L
Sbjct: 285 DAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLL 344

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387
            +M S+GV P++ + N I        E + A R+  RM K  C  D  TY M++K+  + 
Sbjct: 345 DEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRI 404

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGET 446
           G  +K  KVW  M  K+F PS+ T+SV+I+G C  KG + ++C   E MI++GI P   T
Sbjct: 405 GRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTT 464

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
              LR  L+  G  D ++ L  KM
Sbjct: 465 VEMLRNQLLGLGFLDHIEILAAKM 488


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 265/478 (55%), Gaps = 14/478 (2%)

Query: 7   SRNKMISGCI------SFLRRYNSSEPSTEAL-DAAKSISKIMLSS--PKVVLDTALDQS 57
           S++K++S  +       F+  + + + S   L +    IS+I+     P+  L+ +L   
Sbjct: 8   SKHKLLSSYLFPLVQHKFIHSFPTQQISVPLLPELVNEISRIVSDHRHPRHDLELSLTPF 67

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
             ++S ++VE VL++  + G  A  FF WA+    ++HSV+++H ++E L + +Q+ I+W
Sbjct: 68  STQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPGFQHSVQSFHILVEILGRSKQFAILW 127

Query: 118 DLVNAMR---TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           D +   R   +   +  E F II   Y+R    + A+ +F  M ++G+  ++   + LL 
Sbjct: 128 DFLIETRESDSSCKITNEIFWIIFTAYSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLY 187

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            LCK K+VR+AQ+ FD +K  F+  +KTYSIL+ GWGK  +  +ARE+F  M++ GC+ D
Sbjct: 188 TLCKKKHVRQAQQFFDQVKSHFLLTTKTYSILINGWGKIGDSGKARELFDAMLEQGCHVD 247

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++ Y  +++ LCK G VDEA+  +  M S    P +F YS+ + +Y   N +  A     
Sbjct: 248 LLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLD 307

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           +M +  +L +V  YN +I   CK  K +  Y++L +M S G+ P++ + N I        
Sbjct: 308 KMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHC 367

Query: 355 ETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           E + A ++  RM K +C  D  TY M++K+  + G  +KA +VW+ M  K+F PS+ T+S
Sbjct: 368 EVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYS 427

Query: 414 VLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V+I+GLC  KG + ++C     MI++GI P   T   LR  L+  G  D ++ L  KM
Sbjct: 428 VMIHGLCKKKGKLEEACKYFAMMIDEGIPPYDTTIEMLRNRLLGLGLLDNIEILAAKM 485


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 241/439 (54%), Gaps = 6/439 (1%)

Query: 38  ISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           IS+I+    +P   L+T+L+     +S  +VE VL++ +N G  A  FF WA++   +EH
Sbjct: 51  ISRILSDQRNPHHDLETSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEH 110

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYT 153
           S  +YH ++  L   RQ+ I+WD +  MR      +N E   ++ R Y+R     +A+  
Sbjct: 111 SEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRA 170

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           F+ M ++G+  ++   + LL  LCK K+V+ AQ+ FD +K +F   +KTYSIL+ GWG  
Sbjct: 171 FDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHKFEAKAKTYSILVRGWGDI 230

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                AR++F EM   GC  D++ Y  +++ LCK G VDEA  + + + S    P +  Y
Sbjct: 231 GEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSY 290

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++ +  Y   N I         M++  ++ +V  YN +I   CK  K ++ Y++L +M  
Sbjct: 291 AIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMME 350

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEK 392
           +GV+P++ + N IL       E + A ++   M+K  C  D  +Y M++K+  + G  ++
Sbjct: 351 RGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDR 410

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           A ++W+ M  + F PS+ T+SV+I+GLC  KG + ++C   E MI++GI P   T   LR
Sbjct: 411 ATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLR 470

Query: 452 KLLIKEGREDVLKFLQEKM 470
             LI  G  D ++ L  KM
Sbjct: 471 NRLIGFGLLDHIEILACKM 489


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 234/439 (53%), Gaps = 6/439 (1%)

Query: 38  ISKIM--LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           IS+I+     P   L+  L     +++P +VE VL++ +N G  A  FF WA++   +EH
Sbjct: 53  ISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHRFFLWAKRLPGFEH 112

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV--ETFCIIMRKYARVQKVEEAVYT 153
           S  +YH +++ L   +Q+ ++WD ++ MR  R   +  E F +I R Y R     +A+  
Sbjct: 113 SKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRA 172

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           F+ M  +GV   +   + LL  LCK K+V++AQE FD +    +P++KTYSIL+ GWG  
Sbjct: 173 FHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDV 232

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +   AR++F EM + GC  D+V Y  +++ LCK G VDEA  + + M S    P +  Y
Sbjct: 233 GDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSY 292

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+ +  Y   N I  A      M +  ++ +V  YN ++   CK+ K    Y++L +M  
Sbjct: 293 SIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIE 352

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +GV+P+  + N I        E ++A R+  RM K  C  D  TY M++KM  + G  ++
Sbjct: 353 RGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDR 412

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
              VW  M+ + F P+  T++V+++G C  KG + ++C   E MI+ GI P   T   LR
Sbjct: 413 VTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLR 472

Query: 452 KLLIKEGREDVLKFLQEKM 470
             +I  G  + +  L  KM
Sbjct: 473 NRVIGLGFSEQIDVLAGKM 491


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 138/424 (32%), Positives = 240/424 (56%), Gaps = 1/424 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+ GI +S ++V +VLE+FR+A   AF FF WA ++  + H  R YHSM+  LAK
Sbjct: 93  MEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSMMIILAK 152

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M  KR+L ++TF I MR +A  ++ ++AV  F +M+ +     +   
Sbjct: 153 ARQFETMMSMLEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETI 212

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++AQ +F  ++ RF P+ +TY++LL GW +  NL  A  I+ EM+D 
Sbjct: 213 NALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDE 272

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIVT+ IM++ L ++ +  +A+   + M +    P    Y++L+     + ++++A
Sbjct: 273 GFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEA 332

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V  F EM  +G   D A+Y  L+  +    +   VY +LK+M  KG  P+ +T N ++  
Sbjct: 333 VGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKL 392

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   D+A R++++MI+   E    +Y M++K + +    E    VW  M  K F P 
Sbjct: 393 MTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPD 452

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++V I GL  +G   ++C  LE+MIEKG++     + K      + G+ D+L+ L +
Sbjct: 453 DNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAQ 512

Query: 469 KMNL 472
           KM  
Sbjct: 513 KMKF 516


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 242/454 (53%), Gaps = 9/454 (1%)

Query: 18  FLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
            LR  + S  +T   +A    + I+ S+    L  +L    I+ +P++V  +L++  N G
Sbjct: 13  LLRIRHHSTTTTSPPEATTLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHG 72

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCI 136
             A  FFK      +Y H   ++   I+  A++R ++ +W LV+ MR+ R+  +  TF I
Sbjct: 73  PKALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAI 132

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I  +YA + K   AV  F  M +YG  Q+L++FN +L  LCKSK V  A  +F  +K +F
Sbjct: 133 IAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKF 192

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             D  +Y+I++ GW      P+A E+ +EMV+ G  P++ TY IM++   +AG+ +EA G
Sbjct: 193 KADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWG 252

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
               M    C      Y+ ++H  GV   I+ A + F +M K+G+L  VA +NALI   C
Sbjct: 253 FFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILC 312

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
           K +  +N   + ++M  +G  PNS T N+++ GL   GE   A  +  RM    CE +  
Sbjct: 313 KKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQ 372

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL-----CDKGIVSDSCV 430
           TY ++I+ FC  GE+EK   +++ M     +P++ T+++LIN +      D  +V+    
Sbjct: 373 TYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGK-- 430

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           LL +M+++G  P   TF ++   L+  G +D  K
Sbjct: 431 LLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAK 464



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 39/325 (12%)

Query: 149 EAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206
           +A++ F ++  +       ++F+  +    + ++ R    +   M+  R  P  +T++I+
Sbjct: 74  KALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAII 133

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
            E +       RA  +F  M + GC  D+ ++  ++DVLCK+ RV+ A  + K++     
Sbjct: 134 AERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKAL----- 188

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                                          K    AD   YN ++  +C   +      
Sbjct: 189 -------------------------------KGKFKADCVSYNIIVNGWCLIKRTPKALE 217

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +LK+M  +G+ PN  T NI+LNG    G+T+EA+  F  M K  C+ D  TYT +I    
Sbjct: 218 MLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLG 277

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             GE+++A  V+  M     +PS+ TF+ LI  LC K  V ++ ++ E+M+++G  P+  
Sbjct: 278 VVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSI 337

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           T+  + + L   G       L E+M
Sbjct: 338 TYNLVIRGLCHVGEMQRAMELMERM 362


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 241/424 (56%), Gaps = 1/424 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+ GI +S ++V DVLE+F +A   AF FF WA ++Q +EH  R Y+SM+  LAK
Sbjct: 82  MEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSILAK 141

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ +  ++  M  K +L ++TF I MR +A  ++ ++AV  F +M+KY     +   
Sbjct: 142 TRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETI 201

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++AQ +F+ +K RF P+ +TY++LL GW K  NL  A  ++ EM+D 
Sbjct: 202 NHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDK 261

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIV + IM++ L ++ +  +A+ +   M +    P    Y++L+     ++++E+A
Sbjct: 262 GFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEA 321

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V+ F EM  +G   D A+Y  LI  F    +   VY +LK+M  +G  P+  T N ++  
Sbjct: 322 VEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKL 381

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +      D+A R++++M +   E    TY M++K + Q    E    VW  M  K F P 
Sbjct: 382 MTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPD 441

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++VLI GL  +G   ++C  LE+M+EKG++     + K    L + G  D+L+ L +
Sbjct: 442 DNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSRGGNPDILEELAQ 501

Query: 469 KMNL 472
           ++  
Sbjct: 502 RLKF 505



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 126/321 (39%), Gaps = 37/321 (11%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           +K G   +   +N ++S L K++       + + M  + +    T+SI +  +       
Sbjct: 121 EKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERK 180

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A  +F  M        + T   ++D L +A    EA  + +++                
Sbjct: 181 KAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENL---------------- 224

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                               K     ++  Y  L+  +CK         V  +M  KG  
Sbjct: 225 --------------------KGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFK 264

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+    NI+L GL+   +  +A ++F  M  K    D  +YT++I+  C+  ++E+A + 
Sbjct: 265 PDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEY 324

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ M      P    ++ LI G  ++  +     LL++M E+G  P G T+  L KL+ +
Sbjct: 325 FQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTR 384

Query: 457 EGREDVLKFLQEKMNLLVKEP 477
               D    + +KM     EP
Sbjct: 385 LKMPDDAARIYKKMTQSGIEP 405


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 246/451 (54%), Gaps = 10/451 (2%)

Query: 27  PSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFF 84
           PS E ++    IS+++    +PK  L+  L     RVS  +VE VL++ +N G  A  FF
Sbjct: 33  PSPELVN---EISRVLSDHRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFF 89

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYA 142
            WA++  ++EHS+ +YH ++E L   +Q+ ++WD +   R      + +  F I+ R Y+
Sbjct: 90  LWAKRIPDFEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYS 149

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSK 201
           R     EA   FN M ++G+   +   + LL +LC  K+V  AQE FD  K    +P +K
Sbjct: 150 RANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAK 209

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TYSIL+ GW +  +   AR++F EM++  C  D++ Y  ++D LCK+G VD A  + + M
Sbjct: 210 TYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEM 269

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +   +P ++ +++ +H+Y   + +  A      M++  ++ +V  +N +I   CK  K 
Sbjct: 270 GNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKV 329

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
            + Y +L +M  KG  P++ T N I+       E + A ++  RM +  C  D  TY M+
Sbjct: 330 DDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMV 389

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKG 439
           +K+  + G  ++  ++W+ M  ++F P++ T++V+I+GL   KG + ++C   E MI++G
Sbjct: 390 LKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEG 449

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I P   T   LR  L+  G+ DV+  L  KM
Sbjct: 450 IPPYSTTVEMLRNRLVGWGQMDVVDVLAGKM 480



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 126/277 (45%), Gaps = 9/277 (3%)

Query: 200 SKTYSILLEGWGKDPNLP-RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           SK + I+   + +  NLP  A   F  MV+ G  P +     ++  LC    V+ A    
Sbjct: 138 SKVFWIVFRAYSR-ANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFF 196

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT---FLEMEKNGILADVAMYNALIGAF 315
                    P++  YS+LV  +    RI DA      F EM +N  + D+  YNAL+ A 
Sbjct: 197 DKAKGFGIVPSAKTYSILVRGWA---RIRDASGARKVFDEMLENNCVVDLLAYNALLDAL 253

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CK+      Y++ ++M + G+ P++ +  I ++      +   AY+V  RM +     + 
Sbjct: 254 CKSGDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNV 313

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            T+  +IK  C+  +++ A+ +   M  K   P   T++ ++   CD   V+ +  LL  
Sbjct: 314 YTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSR 373

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           M      P   T+  + KLLI+ GR D +  + E M+
Sbjct: 374 MDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMS 410


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/457 (31%), Positives = 245/457 (53%), Gaps = 9/457 (1%)

Query: 23  NSSEPSTEAL---DAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           +S  P T+ L   D    IS+I+    +P   L+ +L      +S  +VE VL++ +N G
Sbjct: 29  SSLAPRTKNLPSPDLVNEISRILSDHRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLG 88

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV--ETFC 135
             A  FF WA++   ++HS  +YH +++ L   +Q+ ++WD +  +R  +   +  + F 
Sbjct: 89  FSAQRFFLWAKRIPGFDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFW 148

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           ++ R Y+R     +A+  F+ M ++G+   +   + LL  LCK K+ + AQ+IFD +K +
Sbjct: 149 LVFRAYSRANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQ 208

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F   +KTYSIL+ GWG       A ++F EM +  C  D++ Y  +++  CK G+V EA 
Sbjct: 209 FQTRAKTYSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAY 268

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + + M S   +P +  +S+ +  Y   N I  A     EM++  ++ +V  YN +I   
Sbjct: 269 KMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKL 328

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADA 374
           CK  K +  Y++L ++  +   P++ + N IL       E + A R+  RM+K  C  D 
Sbjct: 329 CKKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDK 388

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLE 433
            +Y M++K+  + G  ++A +VW+ M  K F PS+ T+SV+++GLC  KG + ++C   E
Sbjct: 389 HSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFE 448

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            MI++GI P   T   LR  LI  G  D ++ L  KM
Sbjct: 449 MMIDEGIPPYSSTVEILRNRLIGLGLLDYIEILAGKM 485


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 237/433 (54%), Gaps = 4/433 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL +SG+ V P + E VL +  +AG LA+ F+ WA KQ  +     AY +MI+ L++
Sbjct: 109 LELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSR 168

Query: 110 IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +RQ+  +W L+  MR +   ++  + F I+MR++A  + V +AV   + M KYG   +  
Sbjct: 169 MRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEY 228

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            F  LL ALCK+ +V++A  +F+ M+ R+ P  K ++ LL GW K+  L  A+ +  +M 
Sbjct: 229 VFGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMK 288

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D G  PDIV Y  ++    +AG++ +A  ++K M    C P +  Y+VL+ +     R+E
Sbjct: 289 DMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLE 348

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A   F+EM+ NG  ADV  Y+ LI  FCK  K K  Y +L +M  +G  PN      I+
Sbjct: 349 EATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIM 408

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
                + E +E   +   M K+ C  D   Y  +I++ C+ GE+++  ++W  M+     
Sbjct: 409 LAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLS 468

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P M TF ++ING  ++G + ++C   ++M+ +G+  +   +G L++L+    R + L+  
Sbjct: 469 PGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGLF-TAPQYGTLKELMNSLLRAEKLEMA 527

Query: 467 QEKMNLLVKEPLC 479
           ++  N +     C
Sbjct: 528 KDAWNCITASKGC 540



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 169/385 (43%), Gaps = 68/385 (17%)

Query: 130 NVETFCIIMRKY-ARVQKVEEAVYTFNVMQKYGVTQ----------NLA----------- 167
           +VE    I+RKY +RV K+E A+    V+ + G+T+          NLA           
Sbjct: 91  DVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQS 150

Query: 168 -------AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPR 218
                  A+  ++  L + +       + + M+     +   + + IL+  +     + +
Sbjct: 151 GHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHK 210

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A E+  EM   GC PD   +G ++D LCK G V EA  + + M     +P+   ++ L++
Sbjct: 211 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYR-WKPSVKHFTSLLY 269

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +  E ++ +A    ++M+  GI  D+ +YN L+G + +A K  + Y +LK+M  K   P
Sbjct: 270 GWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEP 329

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK-- 395
           N+ +  +++  L      +EA R+F  M    C+AD  TY+ +I  FC+ G++++ ++  
Sbjct: 330 NATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELL 389

Query: 396 -------------VWKYMKLKRF--------------------IPSMHTFSVLINGLCDK 422
                        +++++ L                        P +  ++ +I   C  
Sbjct: 390 DEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKL 449

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETF 447
           G V +   L  +M   G+ P  +TF
Sbjct: 450 GEVKEGIQLWNEMESSGLSPGMDTF 474


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 237/445 (53%), Gaps = 7/445 (1%)

Query: 33  DAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           D    IS+++    +PK  L+  L     RVS  +VE VL++ +N G  A  FF WA + 
Sbjct: 36  DLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRI 95

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYARVQKVE 148
            ++ HS+ +YH ++E L   +Q+ ++WD +   R      + +  F I+ R Y+R     
Sbjct: 96  PDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPS 155

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILL 207
           EA   FN M ++G+   +   + LL +LC  K+V  AQE F   K    +P +KTYSIL+
Sbjct: 156 EACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILV 215

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            GW +  +   AR++F EM++  C  D++ Y  ++D LCK+G VD    + + M +   +
Sbjct: 216 RGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLK 275

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P ++ +++ +H Y     +  A      M++  ++ +V  +N +I   CK  K  + Y +
Sbjct: 276 PDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLL 335

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           L +M  KG  P++ T N I+       E + A ++  RM +  C  D  TY M++K+  +
Sbjct: 336 LDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIR 395

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGE 445
            G  ++A ++W+ M  ++F P++ T++V+I+GL   KG + ++C   E MI++GI P   
Sbjct: 396 IGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYST 455

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           T   LR  L+  G+ DV+  L  KM
Sbjct: 456 TVEMLRNRLVGWGQMDVVDVLAGKM 480



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 9/277 (3%)

Query: 200 SKTYSILLEGWGKDPNLP-RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           SK + I+   + +  NLP  A   F  MV+ G  P +     ++  LC    V+ A    
Sbjct: 138 SKVFWIVFRAYSR-ANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFF 196

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT---FLEMEKNGILADVAMYNALIGAF 315
                    P++  YS+LV  +    RI DA      F EM +   + D+  YNAL+ A 
Sbjct: 197 GKAKGFGIVPSAKTYSILVRGWA---RIRDASGARKVFDEMLERNCVVDLLAYNALLDAL 253

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CK+      Y++ ++M + G+ P++ +  I ++     G+   AY+V  RM +     + 
Sbjct: 254 CKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNV 313

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            T+  +IK  C+  +++ A+ +   M  K   P   T++ ++   CD   V+ +  LL  
Sbjct: 314 YTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSR 373

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           M      P   T+  + KLLI+ GR D    + E M+
Sbjct: 374 MDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMS 410


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 238/427 (55%), Gaps = 1/427 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+ G+R+S ++V DVL++F++A   AF FF WA K+  + H  R Y+ M+  L +
Sbjct: 191 MEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAHDSRTYNFMMCVLGR 250

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M  K +L +ETF I ++ +A  ++ ++AV  F++M+KYG    +   
Sbjct: 251 TRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVI 310

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L  +K  ++AQ +F+ +KDRF P  +TY+ILL GW +  NL  A  ++ EM+D 
Sbjct: 311 NFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDR 370

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G NPD+V + +M++ L K  +  +A+ + + M +    P    Y++++  +  +  + +A
Sbjct: 371 GFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEA 430

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F  M   G   D A+Y  LI  F +  K   VY +LK+M  +G  P+ RT N ++  
Sbjct: 431 IEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKL 490

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   D+A R++++MI+   +    TY M++K +      E   ++W  M  K   P 
Sbjct: 491 MTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPD 550

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            +++ V I GL  +    ++C  LE+M+EKG++     + K    + K G   +L+ L  
Sbjct: 551 DNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDISKTGNAVILEELAR 610

Query: 469 KMNLLVK 475
           KMN + K
Sbjct: 611 KMNFVGK 617


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 239/434 (55%), Gaps = 6/434 (1%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           ++ E S +     + + K     PK  L+ AL +SG+ +   + E VL +  +AG L + 
Sbjct: 69  DADEFSVDVEKVYRILRKFHTRVPK--LELALQESGVIMRSGLPERVLSRCGDAGNLGYR 126

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRK 140
           FF WA KQ  Y HS   Y +MI++L K+RQ+  +W L+  MR +   ML  E F ++MR+
Sbjct: 127 FFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRR 186

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           +A V+ V++AV   + M KYG   +   F  LL ALCK+ +V++A  +F+ M+ RF P+ 
Sbjct: 187 FASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNL 246

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           + ++ LL GW ++  +  A+ +  ++ + G  PDIV Y  ++    +AG++ +A  ++  
Sbjct: 247 RHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAE 306

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C P +  +++L+ ++    ++++A+  F EM+ +G  ADV  Y  LI  FCK   
Sbjct: 307 MKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGN 366

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
               Y +L DM  KG  P+  +   I+     + E +E   +   M K+ C  D + Y  
Sbjct: 367 TDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNT 426

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           MI++ C+ G+L++A ++W  M+     P + T+ ++++G   +G + ++C   ++M+E+G
Sbjct: 427 MIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERG 486

Query: 440 IRPSGETFGKLRKL 453
           +  S   +G L++L
Sbjct: 487 LL-SAPQYGTLKEL 499



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 171/358 (47%), Gaps = 4/358 (1%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           ++++L K    +    L   MR +   N+  F  ++  + R  K+ EA +    +++ G 
Sbjct: 218 LLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGF 277

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRARE 221
             ++  +N LL    ++  +R A ++   MK     P++ +++IL++ + K   +  A  
Sbjct: 278 EPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMR 337

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           IF EM  +GC  D+VTY  ++   CK G  D+A  I+  M      P+   Y  ++  + 
Sbjct: 338 IFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHE 397

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            +  +E+ ++   EM K G + D+ +YN +I   CK    K   R+  +M + G+ P   
Sbjct: 398 KKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLD 457

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM---FCQGGELEKAFKVWK 398
           T  ++++G + +G   EA   F+ M++     A  Y  + ++     +  +LE A  +W 
Sbjct: 458 TYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWS 517

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            M  K    ++  +++ I+ L   G V ++C    DM++  + P  +TF KL + L K
Sbjct: 518 CMTTKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKK 575



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 166/362 (45%), Gaps = 33/362 (9%)

Query: 129 LNVETFCIIMRKY-ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL--------CKS 179
           ++VE    I+RK+  RV K+E A+    V+ + G+ + + +  G    L         K 
Sbjct: 75  VDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQ 134

Query: 180 KNVRKAQEIFDCM----------------------KDRFIPDSKTYSILLEGWGKDPNLP 217
              R + E++  M                      ++ ++   + + +L+  +     + 
Sbjct: 135 PGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVK 194

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A E+  EM   GC PD   +G ++D LCK G V EA  + + M      P    ++ L+
Sbjct: 195 KAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRF-NPNLRHFTSLL 253

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +  E +I +A    +++++ G   D+ +YN L+G + +A K ++ + +L +M      
Sbjct: 254 YGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCG 313

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN+ +  I++       + DEA R+F  M    CEAD  TYT +I  FC+ G  +KA+++
Sbjct: 314 PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEI 373

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M  K   PS  ++  ++     K  + +   L+E+M + G  P    +  + +L+ K
Sbjct: 374 LDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCK 433

Query: 457 EG 458
            G
Sbjct: 434 LG 435


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 239/434 (55%), Gaps = 6/434 (1%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           ++ E S +     + + K     PK  L+ AL +SG+ +   + E VL +  +AG L + 
Sbjct: 92  DADEFSVDVEKVYRILRKFHTRVPK--LELALQESGVIMRSGLPERVLSRCGDAGNLGYR 149

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRK 140
           FF WA KQ  Y HS   Y +MI++L K+RQ+  +W L+  MR +   ML  E F ++MR+
Sbjct: 150 FFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRR 209

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           +A V+ V++AV   + M KYG   +   F  LL ALCK+ +V++A  +F+ M+ RF P+ 
Sbjct: 210 FASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNL 269

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           + ++ LL GW ++  +  A+ +  ++ + G  PDIV Y  ++    +AG++ +A  ++  
Sbjct: 270 RHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAE 329

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C P +  +++L+ ++    ++++A+  F EM+ +G  ADV  Y  LI  FCK   
Sbjct: 330 MKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGN 389

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
               Y +L DM  KG  P+  +   I+     + E +E   +   M K+ C  D + Y  
Sbjct: 390 TDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNT 449

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           MI++ C+ G+L++A ++W  M+     P + T+ ++++G   +G + ++C   ++M+E+G
Sbjct: 450 MIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERG 509

Query: 440 IRPSGETFGKLRKL 453
           +  S   +G L++L
Sbjct: 510 LL-SAPQYGTLKEL 522



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 172/361 (47%), Gaps = 4/361 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           +  ++++L K    +    L   MR +   N+  F  ++  + R  K+ EA +    +++
Sbjct: 238 FGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKE 297

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR 218
            G   ++  +N LL    ++  +R A ++   MK     P++ +++IL++ + K   +  
Sbjct: 298 AGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDE 357

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  IF EM  +GC  D+VTY  ++   CK G  D+A  I+  M      P+   Y  ++ 
Sbjct: 358 AMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMM 417

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +  +  +E+ ++   EM K G + D+ +YN +I   CK    K   R+  +M + G+ P
Sbjct: 418 AHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNP 477

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM---FCQGGELEKAFK 395
              T  ++++G + +G   EA   F+ M++     A  Y  + ++     +  +LE A  
Sbjct: 478 GLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKN 537

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +W  M  K    ++  +++ I+ L   G V ++C    DM++  + P  +TF KL + L 
Sbjct: 538 MWSCMTTKGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLK 597

Query: 456 K 456
           K
Sbjct: 598 K 598



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 166/362 (45%), Gaps = 33/362 (9%)

Query: 129 LNVETFCIIMRKY-ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL--------CKS 179
           ++VE    I+RK+  RV K+E A+    V+ + G+ + + +  G    L         K 
Sbjct: 98  VDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQ 157

Query: 180 KNVRKAQEIFDCM----------------------KDRFIPDSKTYSILLEGWGKDPNLP 217
              R + E++  M                      ++ ++   + + +L+  +     + 
Sbjct: 158 PGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVK 217

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A E+  EM   GC PD   +G ++D LCK G V EA  + + M      P    ++ L+
Sbjct: 218 KAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRF-NPNLRHFTSLL 276

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +  E +I +A    +++++ G   D+ +YN L+G + +A K ++ + +L +M      
Sbjct: 277 YGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCG 336

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN+ +  I++       + DEA R+F  M    CEAD  TYT +I  FC+ G  +KA+++
Sbjct: 337 PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEI 396

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M  K   PS  ++  ++     K  + +   L+E+M + G  P    +  + +L+ K
Sbjct: 397 LDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCK 456

Query: 457 EG 458
            G
Sbjct: 457 LG 458


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 235/423 (55%), Gaps = 5/423 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL++SGI + P ++  VL +  +AG L + FF WA KQ  Y HS     SM+  L+K
Sbjct: 84  LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSK 143

Query: 110 IRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +RQ+  +W L+  MR     ++  E F ++MR++A    V++AV   + M KYG+  +  
Sbjct: 144 MRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEY 203

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            F  LL ALCK+ +V++A ++F+ M+++F P+ + ++ LL GW ++  L  A+E+  +M 
Sbjct: 204 VFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 263

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GVENRI 286
           + G  PDIV +  ++     AG++ +A  ++  M      P    Y+VL+      E R+
Sbjct: 264 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRM 323

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A+  F+EME+ G  AD+  Y ALI  FCK       Y VL DM  KGV P+  T   I
Sbjct: 324 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 383

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +     + + +E   +  +M +  C  D   Y ++I++ C+ GE+++A ++W  M+    
Sbjct: 384 MVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL 443

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P + TF ++ING   +G + ++C   ++M+ +GI  S   +G L+ LL    R+D L+ 
Sbjct: 444 SPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF-SAPQYGTLKSLLNNLVRDDKLEM 502

Query: 466 LQE 468
            ++
Sbjct: 503 AKD 505


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 235/423 (55%), Gaps = 5/423 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL++SGI + P ++  VL +  +AG L + FF WA KQ  Y HS     SM+  L+K
Sbjct: 84  LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSK 143

Query: 110 IRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +RQ+  +W L+  MR     ++  E F ++MR++A    V++AV   + M KYG+  +  
Sbjct: 144 MRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEY 203

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            F  LL ALCK+ +V++A ++F+ M+++F P+ + ++ LL GW ++  L  A+E+  +M 
Sbjct: 204 VFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 263

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GVENRI 286
           + G  PDIV +  ++     AG++ +A  ++  M      P    Y+VL+      E R+
Sbjct: 264 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRM 323

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A+  F+EME+ G  AD+  Y ALI  FCK       Y VL DM  KGV P+  T   I
Sbjct: 324 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 383

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +     + + +E   +  +M +  C  D   Y ++I++ C+ GE+++A ++W  M+    
Sbjct: 384 MVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL 443

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P + TF ++ING   +G + ++C   ++M+ +GI  S   +G L+ LL    R+D L+ 
Sbjct: 444 SPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF-SAPQYGTLKSLLNNLVRDDKLEM 502

Query: 466 LQE 468
            ++
Sbjct: 503 AKD 505


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 237/421 (56%), Gaps = 1/421 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S +++  VLE+FR+A   AF FF WA ++Q + H  R Y+SM+  LAK
Sbjct: 157 MEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFAHDSRTYNSMMSILAK 216

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M TK +L +ETF I M+ +A  ++ ++AV  F +M+KY     +   
Sbjct: 217 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 276

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++AQ +FD +K+RF P+  TY++LL GW +  NL  A  I+ +M+D 
Sbjct: 277 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQ 336

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIV + +M++ L ++ +  +A+ +   M S    P    Y++++  +  ++ +E A
Sbjct: 337 GLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 396

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F +M  +G+  D A+Y  LI  F    K   VY +LK+M  KG  P+ +T N ++  
Sbjct: 397 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 456

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   + A R++ +MI+   E    T+ M++K +      E    VW  M  K   P 
Sbjct: 457 MANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICPD 516

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++VLI GL  +G   ++C  LE+M++KG++     + K      K G+ ++ + L +
Sbjct: 517 DNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHKGGQPEIFEELAQ 576

Query: 469 K 469
           +
Sbjct: 577 R 577


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 239/421 (56%), Gaps = 1/421 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S +++ +VLE+FR+A   AF FF WA ++Q + H  R Y+SM+  LAK
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M TK +L +ETF I M+ +A  ++ ++AV  F +M+KY     +   
Sbjct: 208 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 267

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++AQ +FD +K+RF P+  TY++LL GW +  NL  A  I+ +M+D 
Sbjct: 268 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQ 327

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIV + +M++ L ++ +  +A+ +   M S    P    Y++++  +  ++ +E A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F +M  +G+  D A+Y  LI  F    K   VY +LK+M  KG  P+ +T N ++  
Sbjct: 388 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 447

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   + A R++ +MI+   E    T+ M++K +      E    VW+ M  K   P 
Sbjct: 448 MANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPD 507

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++VLI GL  +G   ++C  LE+M++KG++     + K      + G+ ++ + L +
Sbjct: 508 DNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 567

Query: 469 K 469
           +
Sbjct: 568 R 568


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 232/438 (52%), Gaps = 3/438 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +D    I     +SP+ ++  A+D   +RV+  +V+ +L +F N    AF FF W   Q 
Sbjct: 102 IDEVSRILSARFASPEAIM-IAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQG 160

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
            Y H   +Y  M++ L K +Q+ +MW L+N M     ++++ T   +MR+ A   +  EA
Sbjct: 161 GYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEA 220

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +  F+ M ++GV ++  A N LL  LCK ++V++A+ +F  ++    PD  +++ L+ GW
Sbjct: 221 IDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGW 280

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  A +   EM   G +P +VTY  +V+  C          ++  M    C P  
Sbjct: 281 CKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNV 340

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++L+H  G   R  +A+DTF +++++G+  D + YN+LI    +A + ++ Y V+++
Sbjct: 341 VTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 400

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M + G+APN  T N +++      + + A ++  +M  + C  D  TYT ++K+ C+   
Sbjct: 401 MRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQW 460

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++    +  +M  K   P   T+++L++ LC  G V+ SC+ LE+M+ KG  P  ETF  
Sbjct: 461 VKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDL 520

Query: 450 LRKLLIKEGREDVLKFLQ 467
           + + L K   + V K +Q
Sbjct: 521 VMEKLEKRNLQSVYKKIQ 538



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 3/234 (1%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y +MVD+L K  + D   G++  M       +    + ++      +R  +A+D F +M
Sbjct: 168 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 227

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           ++ G++ D    N L+   CK    K    V +++    + P+  + N +++G       
Sbjct: 228 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARML 286

Query: 357 DEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA      M +        TYT +++ +C   + +  + +   M+ +R  P++ T+++L
Sbjct: 287 KEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTIL 346

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           ++ L   G   ++    + + E G+ P    +  L  +L + GR ED    ++E
Sbjct: 347 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 400


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 232/438 (52%), Gaps = 3/438 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +D    I     +SP+ ++  A+D   +RV+  +V+ +L +F N    AF FF W   Q 
Sbjct: 161 IDEVSRILSARFASPEAIM-IAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQG 219

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
            Y H   +Y  M++ L K +Q+ +MW L+N M     ++++ T   +MR+ A   +  EA
Sbjct: 220 GYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEA 279

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +  F+ M ++GV ++  A N LL  LCK ++V++A+ +F  ++    PD  +++ L+ GW
Sbjct: 280 IDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGW 339

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  A +   EM   G +P +VTY  +V+  C          ++  M    C P  
Sbjct: 340 CKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNV 399

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++L+H  G   R  +A+DTF +++++G+  D + YN+LI    +A + ++ Y V+++
Sbjct: 400 VTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 459

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M + G+APN  T N +++      + + A ++  +M  + C  D  TYT ++K+ C+   
Sbjct: 460 MRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQW 519

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++    +  +M  K   P   T+++L++ LC  G V+ SC+ LE+M+ KG  P  ETF  
Sbjct: 520 VKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDL 579

Query: 450 LRKLLIKEGREDVLKFLQ 467
           + + L K   + V K +Q
Sbjct: 580 VMEKLEKRNLQSVYKKIQ 597



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 3/234 (1%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y +MVD+L K  + D   G++  M       +    + ++      +R  +A+D F +M
Sbjct: 227 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 286

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           ++ G++ D    N L+   CK    K    V +++    + P+  + N +++G       
Sbjct: 287 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARML 345

Query: 357 DEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA      M +        TYT +++ +C   + +  + +   M+ +R  P++ T+++L
Sbjct: 346 KEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTIL 405

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           ++ L   G   ++    + + E G+ P    +  L  +L + GR ED    ++E
Sbjct: 406 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 459


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 234/439 (53%), Gaps = 9/439 (2%)

Query: 35  AKSISKIMLSSPKVVLDT---ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           + +I+K++LSSP          L       +P +V  VL++  N G  A  FF + +   
Sbjct: 25  SAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH 84

Query: 92  -NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
             Y H   ++   I+  A++  +  +W L++ MR+ R+  + +TF I+  +YA   K ++
Sbjct: 85  REYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDK 144

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
           AV  F  M ++G  Q+LA+FN +L  LCKSK V KA E+F  ++ RF  D+ TY+++L G
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNG 204

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           W      P+A E+ +EMV+ G NP++ TY  M+    +AG++  A      M    C   
Sbjct: 205 WCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 264

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ +VH +GV   I+ A + F EM + G+L  VA YNA+I   CK +  +N   + +
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGG 388
           +M  +G  PN  T N+++ GL   GE      + +RM  + CE +  TY MMI+ + +  
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS 384

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV---LLEDMIEKGIRPSGE 445
           E+EKA  +++ M     +P++ T+++LI+G+  +    D  V   LL +M+E+G  P   
Sbjct: 385 EVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKF 444

Query: 446 TFGKLRKLLIKEGREDVLK 464
           TF ++   L+  G +   K
Sbjct: 445 TFNRVLNGLLLTGNQAFAK 463



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 156/347 (44%), Gaps = 42/347 (12%)

Query: 59  IRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           I  SP+    V E++ +AG    A   F    +   ++  + +++++++ L K ++ +  
Sbjct: 122 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQ-DLASFNTILDVLCKSKRVEKA 180

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           ++L  A+R +  ++  T+ +I+  +  +++  +A+     M + G+  NL  +N +L   
Sbjct: 181 YELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGF 240

Query: 177 CKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            ++  +R A E F  MK R    D  TY+ ++ G+G    + RAR +F EM+  G  P +
Sbjct: 241 FRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSV 300

Query: 236 VTYGIMVDVLCKAGRVDEAL-----------------------------------GIVKS 260
            TY  M+ VLCK   V+ A+                                    +++ 
Sbjct: 301 ATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQR 360

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI-GAFCKAN 319
           M++  C P    Y++++  Y   + +E A+  F +M     L ++  YN LI G F +  
Sbjct: 361 MENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 420

Query: 320 KFKNVY--RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
               V   ++L +M  +G  P   T N +LNGL+  G    A  + R
Sbjct: 421 SEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILR 467


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 238/421 (56%), Gaps = 1/421 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S +++ +VLE+FR+A   AF FF WA ++Q + H+ R Y+SM+  LAK
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M TK +L +ETF I M+ +A  ++ ++AV  F +M+KY     +   
Sbjct: 208 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 267

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++AQ +FD +K+RF P+  TY++LL GW +  NL  A  I+ +M+D 
Sbjct: 268 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH 327

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIV + +M++ L ++ +  +A+ +   M S    P    Y++++  +  ++ +E A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F +M  +G+  D A+Y  LI  F    K   VY +LK+M  KG  P+ +T N ++  
Sbjct: 388 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 447

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   +   R++ +MI+   E    T+ M++K +      E    VW  M  K   P 
Sbjct: 448 MANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPD 507

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++VLI GL  +G   ++C  LE+M++KG++     + K      + G+ ++ + L +
Sbjct: 508 DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 567

Query: 469 K 469
           +
Sbjct: 568 R 568


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 232/438 (52%), Gaps = 3/438 (0%)

Query: 32   LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
            +D    I     +SP+ ++  A+D   +RV+  +V+ +L +F N    AF FF W   Q 
Sbjct: 1422 IDEVSRILSARFASPEAIM-IAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQG 1480

Query: 92   NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
             Y H   +Y  M++ L K +Q+ +MW L+N M     ++++ T   +MR+ A   +  EA
Sbjct: 1481 GYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEA 1540

Query: 151  VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
            +  F+ M ++GV ++  A N LL  LCK ++V++A+ +F  ++    PD  +++ L+ GW
Sbjct: 1541 IDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGW 1600

Query: 211  GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             K   L  A +   EM   G +P +VTY  +V+  C          ++  M    C P  
Sbjct: 1601 CKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNV 1660

Query: 271  FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              Y++L+H  G   R  +A+DTF +++++G+  D + YN+LI    +A + ++ Y V+++
Sbjct: 1661 VTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 1720

Query: 331  MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
            M + G+APN  T N +++      + + A ++  +M  + C  D  TYT ++K+ C+   
Sbjct: 1721 MRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQW 1780

Query: 390  LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            ++    +  +M  K   P   T+++L++ LC  G V+ SC+ LE+M+ KG  P  ETF  
Sbjct: 1781 VKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDL 1840

Query: 450  LRKLLIKEGREDVLKFLQ 467
            + + L K   + V K +Q
Sbjct: 1841 VMEKLEKRNLQSVYKKIQ 1858



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 3/234 (1%)

Query: 237  TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            +Y +MVD+L K  + D   G++  M       +    + ++      +R  +A+D F +M
Sbjct: 1488 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 1547

Query: 297  EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            ++ G++ D    N L+   CK    K    V +++    + P+  + N +++G       
Sbjct: 1548 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARML 1606

Query: 357  DEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             EA      M +        TYT +++ +C   + +  + +   M+ +R  P++ T+++L
Sbjct: 1607 KEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTIL 1666

Query: 416  INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            ++ L   G   ++    + + E G+ P    +  L  +L + GR ED    ++E
Sbjct: 1667 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 1720


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 237/439 (53%), Gaps = 6/439 (1%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVV--LDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           R NSS    E     + + +I+ +    V  L+ AL +SG+ +   + E VL +  +AG 
Sbjct: 62  RDNSSSKVDEFAKDVEKVYRILRNFHSRVPKLELALQESGVTMRAGLTERVLNRCGDAGN 121

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCI 136
           L + FF WA KQ  Y HS   Y +M++  +K+RQ+  +W L+  MR     ++  E F +
Sbjct: 122 LGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIV 181

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R++A  + VE+A+   + M KYG   +   F  LL ALCK+ +V++A  +F+ M+ RF
Sbjct: 182 LIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMRVRF 241

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P  + ++ LL GW ++  L  A+ +  +M + G  PDIV +  ++     AG++ +A  
Sbjct: 242 SPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFD 301

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++K M    C P +  Y++++  +  + ++++A+  F+EME+ G  ADV  Y ALI  FC
Sbjct: 302 LLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFC 361

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRT-CNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
           K  K    Y++L  M  KG  PN  T   I+L         +    +    +  C  D  
Sbjct: 362 KWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVGCVPDLS 421

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y ++I++ C+ GE+++  ++W  M+   F P + TF ++I+G   +G + ++C   ++M
Sbjct: 422 IYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLVEACEYFKEM 481

Query: 436 IEKGIRPSGETFGKLRKLL 454
           I +G+  + + +G L++LL
Sbjct: 482 IGRGLLTTPQ-YGILKELL 499


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 232/438 (52%), Gaps = 3/438 (0%)

Query: 32   LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
            +D    I     +SP+ ++  A+D   +RV+  +V+ +L +F N    AF FF W   Q 
Sbjct: 1381 IDEVSRILSARFASPEAIM-IAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQG 1439

Query: 92   NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
             Y H   +Y  M++ L K +Q+ +MW L+N M     ++++ T   +MR+ A   +  EA
Sbjct: 1440 GYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEA 1499

Query: 151  VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
            +  F+ M ++GV ++  A N LL  LCK ++V++A+ +F  ++    PD  +++ L+ GW
Sbjct: 1500 IDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGW 1559

Query: 211  GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             K   L  A +   EM   G +P +VTY  +V+  C          ++  M    C P  
Sbjct: 1560 CKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNV 1619

Query: 271  FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              Y++L+H  G   R  +A+DTF +++++G+  D + YN+LI    +A + ++ Y V+++
Sbjct: 1620 VTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 1679

Query: 331  MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
            M + G+APN  T N +++      + + A ++  +M  + C  D  TYT ++K+ C+   
Sbjct: 1680 MRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCKRQW 1739

Query: 390  LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            ++    +  +M  K   P   T+++L++ LC  G V+ SC+ LE+M+ KG  P  ETF  
Sbjct: 1740 VKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQETFDL 1799

Query: 450  LRKLLIKEGREDVLKFLQ 467
            + + L K   + V K +Q
Sbjct: 1800 VMEKLEKRNLQSVYKKIQ 1817



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 3/234 (1%)

Query: 237  TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            +Y +MVD+L K  + D   G++  M       +    + ++      +R  +A+D F +M
Sbjct: 1447 SYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKM 1506

Query: 297  EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            ++ G++ D    N L+   CK    K    V +++    + P+  + N +++G       
Sbjct: 1507 DRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKARML 1565

Query: 357  DEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             EA      M +        TYT +++ +C   + +  + +   M+ +R  P++ T+++L
Sbjct: 1566 KEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTIL 1625

Query: 416  INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            ++ L   G   ++    + + E G+ P    +  L  +L + GR ED    ++E
Sbjct: 1626 MHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEE 1679


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 237/421 (56%), Gaps = 1/421 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S +++ +VLE+FR+A   AF FF WA ++Q + H  R Y+SM+  LAK
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M TK +L +ETF I M+ +A  ++ ++AV  F +M+KY     +   
Sbjct: 207 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 266

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++AQ +FD +K+RF P+  TY++LL GW +  NL  A  I+ +M+D 
Sbjct: 267 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH 326

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIV + +M++ L ++ +  +A+ +   M S    P    Y++++  +  ++ +E A
Sbjct: 327 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 386

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F +M  +G+  D A+Y  LI  F    K   VY +LK+M  KG  P+ +T N ++  
Sbjct: 387 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 446

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   +   R++ +MI+   E    T+ M++K +      E    VW  M  K   P 
Sbjct: 447 MANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPD 506

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++VLI GL  +G   ++C  LE+M++KG++     + K      + G+ ++ + L +
Sbjct: 507 DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 566

Query: 469 K 469
           +
Sbjct: 567 R 567


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 234/424 (55%), Gaps = 1/424 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+ G+++S ++V +VL +F+ A   AF FF WA ++  + H  + Y++M+  L K
Sbjct: 162 MEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNTMMTILGK 221

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  L+  M  K +L +ETF +  + +A  ++ ++AV    +M+KY     +   
Sbjct: 222 TRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKAVGVLELMKKYKYKVGVETI 281

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L ++K  ++A  IF+ +  RF P+ +TY++LL GW +  NL  A +I+ +M+D 
Sbjct: 282 NCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDE 341

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
              PDIV +  M++ L +  +  +A+ + + M +    P    Y++LV  +  + ++++A
Sbjct: 342 DFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEA 401

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V  F EM+  G   D A+Y  LI  F    +   VY +LK+M + G  P+ +T N ++  
Sbjct: 402 VQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKL 461

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   D+A R++++MI+   +    TY+MM+K + Q    E     W  MKLK   P 
Sbjct: 462 MTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPD 521

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            ++++V I GL   G  +++   LE+MIEKG++     + K      + GR D+L+ L +
Sbjct: 522 DNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPDILEELAQ 581

Query: 469 KMNL 472
           KM  
Sbjct: 582 KMKF 585


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/435 (30%), Positives = 230/435 (52%), Gaps = 6/435 (1%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           N  E S +     + + K     PK  L+ AL +SG+ V   + E VL +  +AG L + 
Sbjct: 50  NYDEFSADVEKVYRILRKFHSRVPK--LELALQESGVAVRSGLTERVLNRCGDAGNLGYR 107

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRK 140
           FF WA KQ  Y HS   Y +MI+ L K+RQ+  +W L+  MR +  + ++   F ++MR+
Sbjct: 108 FFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRR 167

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           +A  + V++A+   + M KYG   +   F  LL ALCK+ +V++A  +F+ M+ RF P  
Sbjct: 168 FASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTL 227

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           K ++ LL GW ++  L  A+ +  ++ + G  PDIV Y  ++     AG++ +A  ++K 
Sbjct: 228 KHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKE 287

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C P    ++ L+     + ++E+A+  F EM+  G  AD   Y  LI  FCK  K
Sbjct: 288 MRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGK 347

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
               Y +L +M  +G  PN  T   I+     + E +E   +   M K+ C  D + Y +
Sbjct: 348 ISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNI 407

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I++ C+ GE+++  +VW  M+     P + TF ++I+G   +  + ++C   ++M+ +G
Sbjct: 408 VIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRG 467

Query: 440 IRPSGETFGKLRKLL 454
           +  S   +G L++LL
Sbjct: 468 LL-SAPQYGTLKELL 481


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 221/408 (54%), Gaps = 4/408 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL +SG+ V   + E VL +  +AG L + FF WA KQ  Y HS   Y +MI+ L K
Sbjct: 108 LELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGK 167

Query: 110 IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +RQ+  +W L+  MR +  + ++   F ++MR++A  + V++A+   + M KYG   +  
Sbjct: 168 MRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEH 227

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            F  LL ALCK+ +V++A  +F+ M+ RF P  K ++ LL GW ++  L  A+ +  ++ 
Sbjct: 228 VFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR 287

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           + G  PDIV Y  ++     AG++ +A  ++K M    C P    ++ L+     + ++E
Sbjct: 288 EAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKME 347

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A+  F EM+  G  AD   Y  LI  FCK  K    Y +L +M  +G  PN  T   I+
Sbjct: 348 EAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIM 407

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
                + E +E   +   M K+ C  D + Y ++I++ C+ GE+++  +VW  M+     
Sbjct: 408 AAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLS 467

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           P + TF ++I+G   +  + ++C   ++M+ +G+  S   +G L++LL
Sbjct: 468 PGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL-SAPQYGTLKELL 514


>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
          Length = 524

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 239/439 (54%), Gaps = 7/439 (1%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSV 97
           +S I+   P++ ++ AL++ G+ VS + VEDVL+    AG  A  FF+W+  + + +HS 
Sbjct: 79  VSNILKKPPRMGVENALNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHSP 138

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            A++ +++ L K + +  MWD +  M+ + ++++ET   +   Y +  KV EA  TF+V+
Sbjct: 139 LAWNLLVDLLGKEKLFDAMWDCIKVMKNQGIVSMETMSSVFGNYVQAGKVAEARMTFDVI 198

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           ++YG  Q++ A N  LSA C+ K  ++A E FD +K++  PD+ TY++LLEG   + N+ 
Sbjct: 199 EQYGCPQDVVALNCFLSAFCRYKQSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGNVS 258

Query: 218 RAREIFREM-VDTGCNPDIVT-YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +AR  F EM +  G  P+  + Y   +  L    +V+EAL  +  M +  C P    +  
Sbjct: 259 KARTTFGEMIIRHGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFFRN 318

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK--NVYRVLKDMNS 333
            +         ++A   +  M+++GIL D+  YN +IG FC AN  +    YR+L +M  
Sbjct: 319 TLQILYQRKDTKNAYGLWELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVF 378

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELE 391
            G+ P+ +T N I   LI   + +EA  +FR M K   C   A+ Y M IKM+ +  + E
Sbjct: 379 TGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYAN-YVMAIKMYFEADDPE 437

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +WK+M  K   P     ++LI+G CD G  S++     + I +G++   ET  KL+
Sbjct: 438 MAVMMWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKLK 497

Query: 452 KLLIKEGREDVLKFLQEKM 470
               + G++D    L++KM
Sbjct: 498 NASRQAGKQDAYGQLEKKM 516



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 103/243 (42%), Gaps = 4/243 (1%)

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYT 153
           ++  AY++ + +L    Q +     +  M+T++ L ++  F   ++   + +  + A   
Sbjct: 276 NNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFFRNTLQILYQRKDTKNAYGL 335

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRK--AQEIFDCMK-DRFIPDSKTYSILLEGW 210
           + +M++ G+  +L ++N ++   C +  ++   A  + D M      PD KTY+ + E  
Sbjct: 336 WELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEMVFTGIFPDFKTYNTIFEAL 395

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                +  A  IFREM      P    Y + + +  +A   + A+ + K M      P S
Sbjct: 396 ITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDPEMAVMMWKHMIQKAIFPKS 455

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              ++L+  +    R  +A+   LE    G+   V     L  A  +A K     ++ K 
Sbjct: 456 DCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKLKNASRQAGKQDAYGQLEKK 515

Query: 331 MNS 333
           M S
Sbjct: 516 MKS 518


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 237/433 (54%), Gaps = 4/433 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL +SG+ V P + E VL +  +AG LA+ F+ WA KQ  +     AY +MI+ L++
Sbjct: 83  LELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSR 142

Query: 110 IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +RQ+  +W L+  MR +   ++  + F I+MR++A  + V +AV   + M  YG   +  
Sbjct: 143 MRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEY 202

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            F  LL AL K+ +V++A  +F+ ++ R+ P  K ++ LL GW K+  L  A+ +  +M 
Sbjct: 203 VFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMK 262

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D G  PDIV Y  ++    +A ++ +A  ++K M    C P +  Y+VL+ +     R+E
Sbjct: 263 DAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLE 322

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A   F+EM++NG  AD+  Y+ LI  FCK  K K  Y +L +M  +G  PN      I+
Sbjct: 323 EATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIM 382

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
                + E +E   +   M K+ C  D   Y  +I++ C+ GE+++  ++W  M+     
Sbjct: 383 VAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLS 442

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           PS+ TF ++ING  ++G + ++C   ++M+ +G+  + + +G L++L+    R + L+  
Sbjct: 443 PSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAPQ-YGTLKELMNSLLRAEKLEMA 501

Query: 467 QEKMNLLVKEPLC 479
           ++  N +     C
Sbjct: 502 KDAWNCITASKGC 514



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 171/385 (44%), Gaps = 68/385 (17%)

Query: 130 NVETFCIIMRKY-ARVQKVEEAVYTFNVMQKYGVTQ----------NLA----------- 167
           +VE    I+RKY +RV K+E A+    V+ + G+T+          NLA           
Sbjct: 65  DVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQS 124

Query: 168 -------AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPR 218
                  A+  ++  L + +       + + M+     +   + + IL+  +     + +
Sbjct: 125 GHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHK 184

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++  EM + GC PD   +G ++D L K G V EA  + + +     +P+   ++ L++
Sbjct: 185 AVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYR-WKPSVKHFTSLLY 243

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +  E ++ +A    ++M+  GI  D+ +YN L+G + +A+K  + Y +LK+M  KG  P
Sbjct: 244 GWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEP 303

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           N+ +  +++  L      +EA RVF  M +  C+AD  TY+ +I  FC+ G++++ +++ 
Sbjct: 304 NATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELL 363

Query: 398 KYMKLKRFIPS-----------------------------------MHTFSVLINGLCDK 422
             M  +   P+                                   +  ++ +I   C  
Sbjct: 364 DEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKL 423

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETF 447
           G V +   L  +M   G+ PS +TF
Sbjct: 424 GEVKEGVRLWNEMESSGLSPSIDTF 448


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/443 (32%), Positives = 232/443 (52%), Gaps = 9/443 (2%)

Query: 29  TEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
            EA DA  +I+K++L S    L  AL +  I  +PE+V   L++  N G  A  FFK  +
Sbjct: 34  AEASDA--TIAKLVLESDPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLD 91

Query: 89  KQ-QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQK 146
           +   +Y HS  ++   ++  A++R +   W LV  MR+ R+  + +T  I+  +YA + K
Sbjct: 92  RHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGK 151

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
              AV TF  M ++G+ Q+L +FN LL  LCKS  V  A ++   +K RF PD+ +Y+IL
Sbjct: 152 PHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNIL 211

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
             G+      P A  + +EMV  G  P +VTY  M+    ++ ++ EA      M    C
Sbjct: 212 ANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKC 271

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                 Y+ ++H +G    ++ A   F EM K G+  +VA YNALI  FCK +  +N   
Sbjct: 272 EIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVA 331

Query: 327 VLKDMNSKGV-APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           V ++M  +GV +PN  T N+++ GL   G+ + A     RM +    A   TY ++I+ F
Sbjct: 332 VFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYF 391

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV---LLEDMIEKGIR 441
           C  GE+EK  +V+  M     +P++ T++VLI+ +  +    D  V   LL +M+E+G  
Sbjct: 392 CDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFL 451

Query: 442 PSGETFGKLRKLLIKEGREDVLK 464
           P   TF ++   L+  G +D  K
Sbjct: 452 PRKFTFNRVLNGLVITGNQDFAK 474



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 124/237 (52%), Gaps = 5/237 (2%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +++ Y R  +++EA   +  M+K     ++ ++  ++    ++  V+KA+ +FD M
Sbjct: 242 TYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEM 301

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGR 250
            K+   P+  TY+ L++ + K  ++  A  +F EMV  G C+P++VT+ +++  LC  G 
Sbjct: 302 VKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGD 361

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           ++ ALG ++ M     R +   Y+V++  +     IE  ++ F +M     L ++  YN 
Sbjct: 362 MERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNV 421

Query: 311 LIGAFCKANKFKNVY---RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           LI A     K +++    ++L +M  +G  P   T N +LNGL+  G  D A  + R
Sbjct: 422 LISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILR 478


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 236/452 (52%), Gaps = 8/452 (1%)

Query: 25  SEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           S+P+   L     IS+I+    +P   L+  L      VS ++VE VL++ +N    A  
Sbjct: 43  SDPTLPFL--VSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHR 100

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRK 140
           FF WA++   +E S  +YH +++ L    Q+ I+WD +  +R  R  ++  E F  +   
Sbjct: 101 FFLWAKRIPGFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSSVITHELFWHVFTA 160

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           Y+R    ++A+  FN M ++G+   +   + LL  LCK K+V  AQ+ FD +K  F P  
Sbjct: 161 YSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSV 220

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           KTYSIL  GWG   +   A+++F EM + GC  D++ Y  +++ LCK G+ DEA  +   
Sbjct: 221 KTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLE 280

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           MDS    P +  YS+ + +   EN +          ++  +L +V  YN +I   CK   
Sbjct: 281 MDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQN 340

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTM 379
            +  Y++L +M  +GV P++ + N I        E + A  + +RM +  C  D  TY M
Sbjct: 341 VEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNM 400

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI-VSDSCVLLEDMIEK 438
           ++K+  + G  ++A +VW+ M  + F PS+ T++V+I+G C K   + ++C   E MI++
Sbjct: 401 VLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDE 460

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GI P   T   LR  L+  G +D +  L +KM
Sbjct: 461 GIPPYIATVELLRDRLLGIGFKDQVAILGDKM 492


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 235/427 (55%), Gaps = 1/427 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+ G+R+S ++V DVL++F++A   AF FF  A K+  + H  R Y+ M+  L +
Sbjct: 53  MEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGKRPGFAHDSRTYNFMMCVLGR 112

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M   +  M  K +L +ETF I ++ +A  ++ ++ V  F++M+KYG    +   
Sbjct: 113 TRQFETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRKKEVGIFDLMKKYGFKVGVDVI 172

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L  +K  ++AQ +F+ +KDRF P  +TY+ILL GW +  NL  A  ++ EM+D 
Sbjct: 173 NFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDR 232

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G NPDIV + +M++ L K  +  +A+ + + M +    P    Y++++  +  +  + +A
Sbjct: 233 GFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEA 292

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F  M   G   D A+Y  LI  F +  K   VY +LK+M  +G  P+ RT N ++  
Sbjct: 293 IEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKL 352

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  +   D+A R++++MI+   +    TY M++K +      E   ++W  M  K   P 
Sbjct: 353 MTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKGCCPD 412

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            +++ V I GL  +    ++C  LE+M+EKG++     + K    + K G   +L+ L  
Sbjct: 413 DNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKALKLDYNKFASDISKTGNAVILEELAR 472

Query: 469 KMNLLVK 475
           KMN + K
Sbjct: 473 KMNFVGK 479


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 236/452 (52%), Gaps = 8/452 (1%)

Query: 25  SEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           S+P+   L     IS+I+    +P   L+  L      VS ++VE VL++ +N    A  
Sbjct: 43  SDPTLPFL--VSEISRILSDRRNPHHDLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHR 100

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRK 140
           FF WA++   +E S  +YH +++ L    Q+ I+WD +  +R  R  ++  E F  +   
Sbjct: 101 FFLWAKRIPGFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSSVITHELFWHVFTA 160

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           Y+R    ++A+  FN M ++G+   +   + LL  LCK K+V  AQ+ FD +K  F P  
Sbjct: 161 YSRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSV 220

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           KTYSIL  GWG   +   A+++F EM + GC  D++ Y  +++ LCK G+ DEA  +   
Sbjct: 221 KTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLE 280

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           MDS    P +  YS+ + +   EN +          ++  +L +V  YN +I   CK   
Sbjct: 281 MDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQN 340

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTM 379
            +  Y++L +M  +GV P++ + N I        E + A  + +RM +  C  D  TY M
Sbjct: 341 VEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNM 400

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI-VSDSCVLLEDMIEK 438
           ++K+  + G  ++A +VW+ M  + F PS+ T++V+I+G C K   + ++C   E MI++
Sbjct: 401 VLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDE 460

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GI P   T   LR  L+  G +D +  L +KM
Sbjct: 461 GIPPYIATVELLRDRLLGIGFKDQVAILGDKM 492


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 232/423 (54%), Gaps = 5/423 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ +L++SGI + P ++  VL +  +AG L + FF WA KQ  Y HS     SM++ L+K
Sbjct: 87  LELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLWATKQPGYCHSYEVCKSMVKILSK 146

Query: 110 IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +RQ+  +W L+  MR +   ++  E F +++R++A    V++AV   + M KYG   +  
Sbjct: 147 MRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEY 206

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            F  LL ALCK+ +V+ A ++F+ M+++  P+ + ++ LL GW ++  L  A+E+  +M 
Sbjct: 207 VFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 266

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GVENRI 286
           + G  PDIV +  ++     AG++ +A  ++  M      P +  Y+VL+      E R+
Sbjct: 267 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRM 326

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A+  F+EME+ G  AD+  Y ALI  FCK       Y VL DM  KGV P+  T   I
Sbjct: 327 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 386

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           L     + + +E   +  +M ++ C  D   Y ++I++ C   E+++A ++W  M+    
Sbjct: 387 LVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGL 446

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P    F ++ING   +G + ++C   ++M+ +GI  S   +G L+ LL    R+D L+ 
Sbjct: 447 SPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIF-SAPQYGTLKSLLNTLLRDDKLEM 505

Query: 466 LQE 468
            ++
Sbjct: 506 AKD 508



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 44/265 (16%)

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A E+  EM   G  PD   +G ++D LCK G V +A  + + M   +  P    ++ L+
Sbjct: 188 KAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREKIP-PNLRYFTSLL 246

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +  E ++ +A +  ++M++ G+  D+ ++  L+  +  A K  + Y +L DM  +G  
Sbjct: 247 YGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYE 306

Query: 338 PNSRTCNIILNGLIGRGET--DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           PN+  C  +L   + R E   DEA RVF  M +  CEAD  TYT                
Sbjct: 307 PNA-NCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYT---------------- 349

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
                               LI+G C  G++     +L+DM +KG+ PS  T+ ++  L+
Sbjct: 350 -------------------ALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI--LV 388

Query: 455 IKEGREDVLKFLQ--EKMNLLVKEP 477
             E +E   + L+  EKM  +   P
Sbjct: 389 AHEKKEQFEECLELIEKMKQIGCHP 413


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 225/412 (54%), Gaps = 6/412 (1%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           PK  L+ AL +SG+ +   + E VL +  +AG LA+ FF WA KQ  Y H    Y +MI+
Sbjct: 66  PK--LELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASKQPCYRHCYENYKAMIK 123

Query: 106 SLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
            L+K++Q+  +W L+  MR     ++  E F ++MR++A  + V +A+   + M KYG  
Sbjct: 124 VLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCE 183

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
            +   F  LL ALCK+ +V++A  +F+ M+ RF P  K ++ LL GW K+  L  A+ + 
Sbjct: 184 PDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLKHFTCLLYGWCKEGKLLEAKHVL 243

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            +M + G  PDIV Y  ++     AG++ +A  ++K +    C P +  Y++L+     +
Sbjct: 244 VQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQ 303

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            ++++A+  F+EME++G  ADV  Y AL+  FCK       Y++L+ M  KG  PN  T 
Sbjct: 304 EKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTY 363

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             ++     + E +E   +   M K+ C  D   Y ++I++ C+ GE+      W  M++
Sbjct: 364 LHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEV 423

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
               P + TF ++ING    G + ++C   ++M+E+G+  S   +G L+ LL
Sbjct: 424 SGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGL-LSSRQYGILKDLL 474



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 153/319 (47%), Gaps = 33/319 (10%)

Query: 130 NVETFCIIMRKY-ARVQKVEEAVYTFNVMQKYGVTQNL---------------------- 166
           +VE    ++RK+ +RV K+E A+    V+ + G+T+ +                      
Sbjct: 50  DVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVWASKQP 109

Query: 167 ------AAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYSILLEGWGKDPNLPR 218
                   +  ++  L K K       + + M+  +  +  S+ + +++  +     + +
Sbjct: 110 CYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNK 169

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A E+  EM   GC PD   +G ++D LCK G V EA  + + M      P+   ++ L++
Sbjct: 170 AIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRF-SPSLKHFTCLLY 228

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +  E ++ +A    ++M + G   D+ +YN L+  +  A K  + + +LK++  KG  P
Sbjct: 229 GWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDP 288

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           N+ +  I++  L G+ + DEA RVF  M +  C+AD  TYT ++  FC+   ++K +++ 
Sbjct: 289 NATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQIL 348

Query: 398 KYMKLKRFIPSMHTFSVLI 416
           + M  K  +P+  T+  L+
Sbjct: 349 QSMIQKGHMPNQLTYLHLM 367


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 230/438 (52%), Gaps = 13/438 (2%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEH 95
           +I+K++L S    +  AL +  I+ +P++V  V+++  N G  A  FFK  ++   +Y H
Sbjct: 43  TIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTH 102

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S  ++   ++  A++R +   W LV  MR+ R+  + +T  I+  +YA   K   AV TF
Sbjct: 103 SPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTF 162

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M ++G+ Q+L +FN LL  LCKSK V  A  +   +  RF PD+ TY+IL  G+    
Sbjct: 163 LSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIK 222

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
             P A  + +EMV  G  P +VTY  M+    ++ ++ EA      M    C      Y+
Sbjct: 223 RTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYT 282

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++H +GV   ++ A   F EM K G++ +VA YNALI   CK +  +N   V ++M  +
Sbjct: 283 TVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMARE 342

Query: 335 GV-APNSRTCNIILNGLIGRGETDEAYRVFRRM----IKLCEADADTYTMMIKMFCQGGE 389
           GV  PN  T N+++ GL   G+ + A     RM    ++ C     TY ++I+ FC  GE
Sbjct: 343 GVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRAC---VQTYNVVIRYFCDAGE 399

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV---LLEDMIEKGIRPSGET 446
           +EKA +V+  M     +P++ T++VLI+ +  +    D  V   LL DM+++G  P   T
Sbjct: 400 VEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFT 459

Query: 447 FGKLRKLLIKEGREDVLK 464
           F ++   L+  G +D  K
Sbjct: 460 FNRVLNGLVITGNQDFAK 477



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 143/315 (45%), Gaps = 44/315 (13%)

Query: 94  EHSVR----AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
           EH +R    +++++++ L K ++ +    L+  + ++   +  T+ I+   Y  +++   
Sbjct: 167 EHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPM 226

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLE 208
           A+     M + G+   +  +N +L    +S  +++A E +  MK R    D  TY+ ++ 
Sbjct: 227 ALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIH 286

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCR 267
           G+G   ++ +A+ +F EMV  G  P++ TY  ++ VLCK   V+ A+ + + M    VC 
Sbjct: 287 GFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCV 346

Query: 268 PTSFIYSVL----------------------------VHTYGVENR-------IEDAVDT 292
           P    Y+V+                            V TY V  R       +E A++ 
Sbjct: 347 PNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEV 406

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVY---RVLKDMNSKGVAPNSRTCNIILNG 349
           F +M     L ++  YN LI A     K +++    ++L DM  +G  P   T N +LNG
Sbjct: 407 FGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNG 466

Query: 350 LIGRGETDEAYRVFR 364
           L+  G  D A  + R
Sbjct: 467 LVITGNQDFAKEILR 481


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 226/446 (50%), Gaps = 15/446 (3%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           S+ +LD ++ IS +   SP +V       S +R    + +               FF WA
Sbjct: 37  SSLSLDFSQIISTVRSISPSIVRHVIAQSSAVRHGIPVPQ------------VLAFFNWA 84

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQK 146
             Q  +  S  AY+ M++   ++  + + W  ++ M+ + + + VETF I+MR+Y R   
Sbjct: 85  SNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMRRYVRAGL 144

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
             EA++ FN M+ Y    +  AF+ L+S LC+ +   +AQE FD +KD+F PD   Y+ L
Sbjct: 145 AAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDKFEPDVIVYTNL 204

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + GW +  N+  A  +F EM   G  P++ TY I++D LC+ G++  A  I   M    C
Sbjct: 205 VRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGC 264

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P S  Y+ L+  +    R E  +  + +M++ G   D   YN LI   CK    ++  +
Sbjct: 265 QPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIK 324

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           V+  M  KG APN+ T N +   +   G+ + A+R++++M +L CEA+  TY  ++KMF 
Sbjct: 325 VIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFV 384

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSG 444
                +   K+   M   +  P+++T+ VLI   C  G  +++     +MI EK +RPS 
Sbjct: 385 ASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSL 444

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKM 470
             +  + + L K G+    + L EKM
Sbjct: 445 PVYDMVLQQLRKAGQLKKHEELVEKM 470



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 3/295 (1%)

Query: 185 AQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A    D MK R +  + +T+ IL+  + +      A   F  M D  C PD + + I++ 
Sbjct: 113 AWYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILIS 172

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           +LC+  R  +A     S+      P   +Y+ LV  +     I +A   F EM+  GI  
Sbjct: 173 ILCRERRASQAQEFFDSLKDKF-EPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKP 231

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +V  Y+ +I + C+  +    + +  +M   G  PNS T N ++   +  G T++  +V+
Sbjct: 232 NVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVY 291

Query: 364 RRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            +M +L CE D  TY  +I+  C+   LE A KV   M  K   P+  TF+ L   +   
Sbjct: 292 NQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKL 351

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G V+ +  + + M E     +  T+  L K+ +     D++  L+ +M+    EP
Sbjct: 352 GDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEP 406


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 221/438 (50%), Gaps = 5/438 (1%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           L+AA   + I+ SS    L   L    I+ +P++V  +L++  N G  A  FF       
Sbjct: 36  LEAAALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHP 95

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEA 150
           +Y H   +Y   I+  A++R    +  LV  MR+ R+    +TF II  +YA   K   A
Sbjct: 96  SYSHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRA 155

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           V  F  M ++G  Q+L +FN +L  LCKSK V  A  +F   K +F  D  +Y++++ GW
Sbjct: 156 VKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGW 215

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                  +A E+ +EMV  G  P++ +Y  M+    +AG+++EA      M    C    
Sbjct: 216 CLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDV 275

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ ++H +GV   I+ A   F  M K G+L  VA YNA I   CK +   N   + ++
Sbjct: 276 ITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEE 335

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  KG  PNS T N+++ GL  RGE + A     RM    CE +  TY ++I+ FC  GE
Sbjct: 336 MVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGE 395

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV---LLEDMIEKGIRPSGET 446
           ++KA  +++ M     +P++ T+++LI+ +  +    D  V   LL +M+++G  P   T
Sbjct: 396 IDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFT 455

Query: 447 FGKLRKLLIKEGREDVLK 464
           F ++   L+  G +   K
Sbjct: 456 FNRVLNGLLLTGNQGFAK 473



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 2/277 (0%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P  KT++I+ E +       RA ++F  M   GC  D+ ++  ++DVLCK+ RV+ A
Sbjct: 131 RLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMA 190

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             + K       R     Y+V+V+ + +  R   A++   EM K G+  ++  YN ++  
Sbjct: 191 YNLFKVFKGKF-RADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKG 249

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           + +A +    +    +M  +    +  T   +++G    GE   A +VF  M+K      
Sbjct: 250 YFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPS 309

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY   I++ C+   ++ A  +++ M +K ++P+  T++++I GLC +G +  +   + 
Sbjct: 310 VATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMG 369

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            M + G  P+ +T+  + +    EG  D    L +KM
Sbjct: 370 RMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKM 406



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 168/390 (43%), Gaps = 41/390 (10%)

Query: 16  ISFLRRYNSSEPSTEALDAAKSISKIMLSSPKV-VLDTALDQSGIRVSPEIVEDVLEKFR 74
            + L  + S      + D A  IS  +  SP +  L   +  + +  +P+    + E++ 
Sbjct: 88  FNLLSHHPSYSHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYA 147

Query: 75  NAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET 133
           +AG        +    Q      +++++++++ L K ++ ++ ++L    + K   +  +
Sbjct: 148 SAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVS 207

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++  +  +++  +A+     M K G+T NL ++N +L    ++  + +A + F  MK
Sbjct: 208 YNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMK 267

Query: 194 DRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            R    D  TY+ ++ G+G    + RAR++F  MV  G  P + TY   + VLCK   VD
Sbjct: 268 KRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVD 327

Query: 253 EALGIVKSMDSTVCRPTSFIYSVL----------------------------VHTYGV-- 282
            A+ I + M      P S  Y+++                            V TY +  
Sbjct: 328 NAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVI 387

Query: 283 -----ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC---KANKFKNVYRVLKDMNSK 334
                E  I+ A+D F +M     L ++  YN LI A     K++       +L +M  +
Sbjct: 388 RYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDR 447

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           G  P   T N +LNGL+  G    A  + R
Sbjct: 448 GFVPRKFTFNRVLNGLLLTGNQGFAKEILR 477


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 228/438 (52%), Gaps = 3/438 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
            D A  I     +SP+ ++  A+D   +RVS  +V+ +L +F +    AF FF WA  Q+
Sbjct: 96  FDEASRILTSCFASPEAIV-IAMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQE 154

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
            Y HS  +Y+SM++ L K +Q+ +MW L++ M     ++++ T   +MR+ A   +  +A
Sbjct: 155 GYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDA 214

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +  FN M ++GV ++  A N LL  LCK ++V++A+  F  ++    PD  +++ L+ GW
Sbjct: 215 IDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGW 274

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   +  AR++ +EM + G  P ++TY  +++  C          I+  M S  C P  
Sbjct: 275 CKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNV 334

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++++H  G   R ++A+D F ++  +G   D + YN+LI    +A + ++   V+  
Sbjct: 335 ITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDK 394

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M   GV P   T N +++      + + A ++  +M  + C+ D  TYT ++K+ C+   
Sbjct: 395 MRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQW 454

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++    +  +M  K   P   T+++L+  LC  G  + SC+ LE+M+ KG  P  ETF  
Sbjct: 455 IKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAPKKETFDL 514

Query: 450 LRKLLIKEGREDVLKFLQ 467
           + + L K       K +Q
Sbjct: 515 VAEKLDKANLHSAKKKIQ 532



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 114/260 (43%), Gaps = 10/260 (3%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A+E +R   D+        Y  MVD+L K  + D   G++  MD      +    + ++ 
Sbjct: 152 AQEGYRHSADS--------YNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMR 203

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                +R  DA+D F +M++ G++ D    N L+   CK    K      +++    V P
Sbjct: 204 RLAGASRWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRG-SVPP 262

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVW 397
           +  + N +++G       +EA  + + M +   +    TYT +I+ +C   + +  + + 
Sbjct: 263 DESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAIL 322

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M+ K   P++ T++++++ L   G   ++  + + +   G  P    +  L  +L + 
Sbjct: 323 NEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRA 382

Query: 458 GREDVLKFLQEKMNLLVKEP 477
           GR +    + +KM +    P
Sbjct: 383 GRLEDANSVVDKMRMTGVRP 402


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 231/422 (54%), Gaps = 1/422 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S  +V  VLE+F++A   AF FF WA ++  + H+ R Y++M+  L +
Sbjct: 222 MEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGR 281

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M  K +L +ETF I ++ +A  ++ ++AV  F +M++Y     +   
Sbjct: 282 TRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTI 341

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL  L ++K  ++AQ +F+ ++DRF P+ +TY++LL GW +  NL  A   + EM+D 
Sbjct: 342 NCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDK 401

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDI+ +  M++ L K  +  +A+ + + M +    P    Y++L+     + ++++A
Sbjct: 402 GFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEA 461

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V+ F EM  +G   D A+Y  LI  F    K   VY +LK+M  KG   + RT N ++  
Sbjct: 462 VEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKL 521

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  R   D+A R++++MI+   +    TY MM+K +      E    VWK M  K   P 
Sbjct: 522 MTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCPD 581

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            +++ V I GL   G   ++C  LE+MIEKG++     + K      + G+ D+L+ L  
Sbjct: 582 DNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAR 641

Query: 469 KM 470
           KM
Sbjct: 642 KM 643



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 3/253 (1%)

Query: 86  WAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYAR 143
           W E   + ++  + A+H+M+E L K ++      L   M+ K    NV T+ I++R   +
Sbjct: 395 WNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCK 454

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKT 202
             K++EAV  F+ M   G   + A +  L++     K + K   +   MK++  P D +T
Sbjct: 455 QMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRT 514

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L++          A  I+++M+  G  P + TY +M+         +    + K M 
Sbjct: 515 YNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMG 574

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
              C P    Y V +       R E+A     EM + G+ A    YN     F +A K  
Sbjct: 575 RKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPD 634

Query: 323 NVYRVLKDMNSKG 335
            +  + + M  +G
Sbjct: 635 ILEELARKMKFEG 647


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 220/418 (52%), Gaps = 3/418 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +D    I +   +SP+ ++ T +D   +RVS  +V  VL +F N    AF FF WA  Q+
Sbjct: 133 MDEVSRILRSRFASPEAIVIT-MDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQE 191

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEA 150
            Y H   +Y  M++ L K +Q+ +M  L+  M     ++++ T   +MR+     +  +A
Sbjct: 192 GYCHCADSYDMMVDILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDA 251

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +  F+ M ++GV ++  A N LL  LCK ++V++A+  F  +K    PD  +++ L+ GW
Sbjct: 252 IDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLVHGW 311

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  ARE  +EM   G +P + TY  +++  C         GI+  M +  C P  
Sbjct: 312 CKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNI 371

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++++H  G   R ++A+DTF +++++G   D + YN LI   C+A + ++   V+++
Sbjct: 372 ITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEE 431

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M+  G++PN  T N +++        + A ++  +M  + C  D  TYT ++K+ C+   
Sbjct: 432 MHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKW 491

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           ++    +  +M  K   P   T+++L+  LC  G ++ SC+ LE+M+ KG  P   TF
Sbjct: 492 VKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATF 549



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 110/264 (41%), Gaps = 37/264 (14%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           ++  +  SV  Y  +IE+    + +Q +  +++ M TK    N+ T+ I+M    +  + 
Sbjct: 328 ERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRT 387

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           +EA+ TF+ +++ G   + + +N L+  LC++  ++ A  + + M    I P+  T++ L
Sbjct: 388 QEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTL 447

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           +           A ++  +M +  CNPDI TY  ++ + C+   V   L ++        
Sbjct: 448 ISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLI-------- 499

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                                        M +  I  D + Y  L+   C+  +      
Sbjct: 500 ---------------------------CHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCL 532

Query: 327 VLKDMNSKGVAPNSRTCNIILNGL 350
            L++M  KG  P   T +++L  L
Sbjct: 533 FLEEMVLKGFTPQQATFDLVLEKL 556



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 2/236 (0%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y +MVD+L K  + D   G++  M       +    + ++      NR  DA+D F +M
Sbjct: 199 SYDMMVDILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKM 258

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           ++ G+  D    N L+   CK    K      + +    + P+  + N +++G       
Sbjct: 259 DRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGT-IPPDESSFNTLVHGWCKARML 317

Query: 357 DEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA    + M +        TYT +I+ +C   + +    +   M  K   P++ T++++
Sbjct: 318 KEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIV 377

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           ++ L   G   ++    + + + G       +  L  +L + GR     F+ E+M+
Sbjct: 378 MHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMH 433


>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
          Length = 504

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 239/459 (52%), Gaps = 15/459 (3%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           S  P T  ++    +S I+   P++ ++  L+  G+ VS + VEDVL+    AG  A  F
Sbjct: 41  SQYPPTTPIEVI--VSNILKKPPQMGIENTLNGLGLGVSIKFVEDVLKLSYGAGMEAMKF 98

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143
           F+WA  + + +HS  A++ +++ L   + +  MWD +  M+ + +++ ET   +   Y +
Sbjct: 99  FRWAGLKLSSKHSPLAWNLLVDLLGSDKLFDAMWDCIKIMKNQGIVSTETLSSVFGNYVQ 158

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
             KV+EA  TF VM++YG  Q++ A N  +SALC+ K V+ A E FD +K+R  PD+ TY
Sbjct: 159 AGKVDEARMTFEVMEQYGCRQDVVALNCYISALCRYKQVKAALEFFDSVKERIAPDADTY 218

Query: 204 SILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVT-YGIMVDVLCKAGRVDEALGIVKSM 261
           ++LLEGW  + N+  AR  F EM+   G  P+  + Y   +  L    +VDEAL  +  M
Sbjct: 219 ALLLEGWEIEGNVSNARSTFGEMIARLGWMPNNTSAYNAFLSTLVNGFQVDEALKYLGVM 278

Query: 262 DSTVCRP-TSFIYSVLVHTYGVENRIE-----DAVDTFLEMEKNGILADVAMYNALIGAF 315
            +  C P   F  + L   Y  +   E       +  +  M ++GI+ D+  YN +IG  
Sbjct: 279 KTKKCLPDLGFFRNTLQILYQRKAMKEPYGLWQLMSLWEFMRQSGIVPDLPTYNTMIGVC 338

Query: 316 CKANKFK--NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCE 371
           C AN  +  + Y +L +M   G  P+S+T N I    I   + +EA  +FR M K   C 
Sbjct: 339 CSANPIQVNSAYSLLDEMALTGAFPDSKTYNTIFEAFITARKVEEASSIFREMTKNEFCP 398

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
             A+ Y M IKM+ +  + E A  +W++M  K   P     ++LI+G  D G VS +   
Sbjct: 399 LYAN-YVMAIKMYFEADDSEMAVMMWRHMIQKAIFPKSDCAAILIDGFLDLGRVSAALKY 457

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             + I +G++   ET  KL+   I+ G++D    L+ KM
Sbjct: 458 SLEAITRGVQIPVETMIKLKNASIQTGKQDAYGQLEIKM 496


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 137/416 (32%), Positives = 220/416 (52%), Gaps = 11/416 (2%)

Query: 35  AKSISKIMLSS--PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           AK+I  I+  S   +V + + ++Q GI+VS E+V +VL + RN    AF FF WA +Q  
Sbjct: 25  AKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPG 84

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVE 148
           Y HSVR YHSMI  L K+R++   W L++ MR  +    ++  +T  I++RKY  V  V 
Sbjct: 85  YAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVG 144

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
            A+ TF   +++     +  F  LLSALC+ KNV+ A+++  C K  F  ++K+++I+L 
Sbjct: 145 RAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLN 204

Query: 209 GWGKDPNLPRARE-IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           GW      PR  E ++REM   G   D+V+Y  M+    KAG +   L + K M      
Sbjct: 205 GWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGIE 264

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P   +Y+ ++H       + +A +    ME+ G+  ++  YN+LI   C+A K +     
Sbjct: 265 PDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGA 324

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
             DM  + ++P  RT +  L  ++  GE  E + +  +M K+ C+   DTY M+I+ FC+
Sbjct: 325 FDDMLKRCISPTIRTYHAFLR-ILRTGE--EVFALLEKMRKMGCQPINDTYIMLIRKFCR 381

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             +LE  FK+W  M      P   ++ VLI+GL   G +  +     +M EK + P
Sbjct: 382 WRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLLP 437



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 52/295 (17%)

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-----TVCRPTSFIYSVLVHTYGVEN 284
           G    +  Y  M+ +L K  + D A  ++  M       ++  P + +  +++  Y   +
Sbjct: 84  GYAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLL--IMIRKYCAVH 141

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN-SKGVAP-NSRT 342
            +  A++TF   ++      +  + +L+ A C+   +KNV    + M  +K V P N+++
Sbjct: 142 DVGRAINTFYAYKRFKFDMGIEEFQSLLSALCR---YKNVQDAEQLMYCNKAVFPLNTKS 198

Query: 343 CNIILNGLIGR-GETDEAYRVFRRMIKL-------------------------------- 369
            NI+LNG     G   E+ RV+R M K                                 
Sbjct: 199 FNIVLNGWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQM 258

Query: 370 ----CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D   Y  +I    +G  + +AF + K M+ K   P++ T++ LI  LC    V
Sbjct: 259 KKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKV 318

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
            ++    +DM+++ I P+  T+    ++L + G E+V   L EKM  +  +P+ D
Sbjct: 319 EEAKGAFDDMLKRCISPTIRTYHAFLRIL-RTG-EEVFALL-EKMRKMGCQPIND 370


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 232/424 (54%), Gaps = 1/424 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S  +V  VLE+F++A   AF FF WA ++  + H+ R Y++M+  L +
Sbjct: 222 MEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGR 281

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M  K +L +ETF I ++ +A  ++ ++AV  F +M++Y     +   
Sbjct: 282 TRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTI 341

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL  L ++K  ++AQ +F+ ++DRF P+ +TY++LL GW +  NL  A   + EM+D 
Sbjct: 342 NCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDK 401

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDI+ +  M++ L K  +  +A+ + + M +    P    Y++L+     + ++++A
Sbjct: 402 GFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEA 461

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V+ F EM  +G   D A+Y  LI  F    K   VY +LK+M  KG   + RT N ++  
Sbjct: 462 VEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKL 521

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +  R   D+A R++++MI+   ++   TY MM+K +      E    VW+ M  K   P 
Sbjct: 522 MTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCPD 581

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            +++ V I GL   G   ++C  LE+MIEKG++     + K      + G+ D+L+ L  
Sbjct: 582 DNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAR 641

Query: 469 KMNL 472
           KM  
Sbjct: 642 KMKF 645



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 3/253 (1%)

Query: 86  WAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYAR 143
           W E   + ++  + A+H+M+E L K ++      L   M+ K    NV T+ I++R   +
Sbjct: 395 WNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCK 454

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKT 202
             K++EAV  F+ M   G   + A +  L++     K + K   +   MK++  P D +T
Sbjct: 455 QMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRT 514

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L++          A  I+++M+  G    + TY +M+         +    + + M 
Sbjct: 515 YNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMG 574

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
              C P    Y V +       R E+A     EM + G+ A    YN     F +A K  
Sbjct: 575 RKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPD 634

Query: 323 NVYRVLKDMNSKG 335
            +  + + M  +G
Sbjct: 635 ILEELARKMKFEG 647


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 232/418 (55%), Gaps = 5/418 (1%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK 85
           E +++   A + + K     PK  L+ AL++SG+ + P ++E VL +  +AG L + FF 
Sbjct: 79  EFASDVEKAYRILRKFHSRVPK--LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFV 136

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYAR 143
           WA KQ  Y HS+  Y SM++ L+K+RQ+  +W L+  MR +  +++  E F ++++++A 
Sbjct: 137 WAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 196

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
              V++A+   + M  +G+  +   F  LL ALCK  +V+ A ++F+ M+ RF  + + +
Sbjct: 197 ADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLRFPVNLRYF 256

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + LL GW ++  +  A+ +  +M + G  PDIV Y  ++     AG++ +A  ++K M  
Sbjct: 257 TSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRR 316

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P +  Y+VL+      +R+E+A+  F+EME+    ADV  Y AL+  FCK  K   
Sbjct: 317 RGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDK 376

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
            Y VL DM  KG+ P+  T   I+     + +  E   +  +M ++    D   Y ++I+
Sbjct: 377 CYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIR 436

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           + C+ GE+++A ++W  M+     P   TF ++INGL  +G + ++C   ++M+ +G+
Sbjct: 437 LACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGL 494


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 215/407 (52%), Gaps = 8/407 (1%)

Query: 61  VSPEIVEDVLEK---FRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           VSP +V  V+EK    R+      A  FF WA  +  + H    Y+ MI+   K+R + +
Sbjct: 101 VSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDL 160

Query: 116 MWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
            W +++ M+ + + +++ETF I++R+Y R     EAV+ FN M+ Y    +  AF+ L+S
Sbjct: 161 GWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILIS 220

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            LC+ +   +AQ  FD +KD+F PD   Y+ L+ GW +  N+P A  +F EM   GC P+
Sbjct: 221 ILCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPN 280

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           + TY I++D LC+ G++  A  +   M    C P S  ++ L+  +    R E  +  + 
Sbjct: 281 VYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYN 340

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           +M++ G   D   YN LI + CK        +VL  M  KG +PN+ T N +   +    
Sbjct: 341 QMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLR 400

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           + + A+R++ +M +L C+A+  TY ++++MF      +   K+ K M      P+++T+ 
Sbjct: 401 DVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYC 460

Query: 414 VLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGR 459
           VLI   C  G  +++     +M+ EK ++PS   + K+ + L K G+
Sbjct: 461 VLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQ 507



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 4/332 (1%)

Query: 149 EAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSIL 206
           +A+  FN    + G T +   +N ++    K +N     ++ D MK R +  S +T+SIL
Sbjct: 124 QALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSIL 183

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           +  + +      A   F  M D  C PD + + I++ +LC+  R  EA     S+     
Sbjct: 184 IRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKF- 242

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   +Y+ LV  +     I +A   F EM+  G + +V  Y  +I A C+  +    + 
Sbjct: 243 EPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHD 302

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           V  +M   G  PNS T N +L   +  G T++  +V+ +M ++ C  D  TY  +I+  C
Sbjct: 303 VFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHC 362

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G L++A KV   M  K   P+  TF+ L   +     V+ +  L   M E   + +  
Sbjct: 363 KDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTV 422

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           T+  L ++ +     D++  L+++M+    EP
Sbjct: 423 TYNILMRMFVDTKSTDMVLKLKKEMDEDDVEP 454


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 213/391 (54%), Gaps = 6/391 (1%)

Query: 35  AKSISKIMLSSPKVVLDT---ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           + +I+K++LSSP          L       +P +V  VL++  N G  A  FF + +   
Sbjct: 25  SAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH 84

Query: 92  -NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
             Y H   ++   I+  A++  +  +W L++ MR+ R+  + +TF I+  +YA   K ++
Sbjct: 85  REYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDK 144

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
           AV  F  M ++G  Q+LA+FN +L  LCKSK V KA E+F  ++ RF  D+ TY+++L G
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNG 204

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           W      P+A E+ +EMV+ G NP++ TY  M+    +AG++  A      M    C   
Sbjct: 205 WCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 264

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ +VH +GV   I+ A + F EM + G+L  VA YNA+I   CK +  +N   + +
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGG 388
           +M  +G  PN  T N+++ GL   GE      + +RM  + CE +  TY MMI+ + +  
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS 384

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           E+EKA  +++ M     +P++ T+++LI+G+
Sbjct: 385 EVEKALGLFEKMGSGDCLPNLDTYNILISGM 415



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 37/265 (13%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P  KT++I+ E +       +A ++F  M + GC  D+ ++  ++DVLCK+      
Sbjct: 121 RIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS------ 174

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
                                         R+E A + F  + +     D   YN ++  
Sbjct: 175 -----------------------------KRVEKAYELFRAL-RGRFSVDTVTYNVILNG 204

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           +C   +      VLK+M  +G+ PN  T N +L G    G+   A+  F  M K  CE D
Sbjct: 205 WCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 264

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT ++  F   GE+++A  V+  M  +  +PS+ T++ +I  LC K  V ++ V+ E
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEG 458
           +M+ +G  P+  T+  L + L   G
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAG 349



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           I  SP+    V E++ +AG    A   F    +   ++  + +++++++ L K ++ +  
Sbjct: 122 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQ-DLASFNTILDVLCKSKRVEKA 180

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           ++L  A+R +  ++  T+ +I+  +  +++  +A+     M + G+  NL  +N +L   
Sbjct: 181 YELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGF 240

Query: 177 CKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            ++  +R A E F  MK R    D  TY+ ++ G+G    + RAR +F EM+  G  P +
Sbjct: 241 FRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSV 300

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY  M+ VLCK   V+ A+ + + M      P    Y+VL+             +    
Sbjct: 301 ATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQR 360

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           ME  G   +   YN +I  + + ++ +    + + M S    PN  T NI+++G+  R  
Sbjct: 361 MENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 420

Query: 356 TDE 358
           +++
Sbjct: 421 SED 423



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 100/197 (50%), Gaps = 2/197 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y++M++   +  Q +  W+    M+ +   ++V T+  ++  +    +++ A   F
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           + M + GV  ++A +N ++  LCK  NV  A  +F+ M  R + P+  TY++L+ G    
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 348

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               R  E+ + M + GC P+  TY +M+    +   V++ALG+ + M S  C P    Y
Sbjct: 349 GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTY 408

Query: 274 SVLVHTYGVENRIEDAV 290
           ++L+    V  R ED V
Sbjct: 409 NILISGMFVRKRSEDMV 425


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 218/399 (54%), Gaps = 8/399 (2%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L   L++  ++ S E+V ++L + RN    AF FF WA KQQ Y  SVR YHSMI  L K
Sbjct: 114 LRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGK 173

Query: 110 IRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +R++   W L++ MR  +  ++N +T  I++RKY  V  V +A+ TF+  +++ +   + 
Sbjct: 174 MRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGID 233

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR-AREIFREM 226
            F  LLSALC+ KNV  A  +  C KD++  D+K+++I+L GW      PR A  ++ EM
Sbjct: 234 DFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEM 293

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            + G   D+V+Y  M+    K G +++ L +   M      P   +Y+ +VH     + +
Sbjct: 294 GNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFV 353

Query: 287 EDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            +A +    ME+  GI  +V  YN+LI   CKA K +   +V  +M  KG+ P  RT + 
Sbjct: 354 SEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA 413

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            +  ++  GE  E + +  +M K+ CE   +TY M+I+  C+  + +    +W  MK K 
Sbjct: 414 FMR-ILRTGE--EVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKT 470

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             P + ++ V+I+GL   G + ++    ++M +KG+RP+
Sbjct: 471 VGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPN 509



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQK 146
           K++  E   + Y++++ +LAK        +L+  M  ++ +  NV T+  +++   + +K
Sbjct: 329 KKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARK 388

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI---PDSKT 202
            EEA   F+ M + G+   +  ++  +  L      R  +E+F+ + K R +   P  +T
Sbjct: 389 TEEAKQVFDEMLEKGLFPTIRTYHAFMRIL------RTGEEVFELLAKMRKMGCEPTVET 442

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y +L+    +  +      ++ EM +    PD+ +Y +M+  L   G+++EA G  K M 
Sbjct: 443 YIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMK 502

Query: 263 STVCRPTSFIYSVLVHTYG----VENRIEDA 289
               RP   +  ++   +      E RI D+
Sbjct: 503 DKGMRPNENVEDMIQSWFSGKQYAEQRITDS 533



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 53/284 (18%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           Y  M+ +L K  + D A  ++  M     S V   T  I   ++  Y   + +  A++TF
Sbjct: 164 YHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLI---MIRKYCAVHDVGKAINTF 220

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRV--LKDMNSKGVAPNSRTCNIILNGLI 351
              ++  +   +  + +L+ A C+   +KNV     L   N      ++++ NI+LNG  
Sbjct: 221 HAYKRFKLEMGIDDFQSLLSALCR---YKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWC 277

Query: 352 GR-GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL------- 402
              G   EA RV+  M  +  + D  +Y+ MI  + +GG L K  K++  MK        
Sbjct: 278 NVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDR 337

Query: 403 -----------------------------KRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
                                        K   P++ T++ LI  LC      ++  + +
Sbjct: 338 KVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFD 397

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +M+EKG+ P+  T+    ++L + G E+V + L  KM  +  EP
Sbjct: 398 EMLEKGLFPTIRTYHAFMRIL-RTG-EEVFELLA-KMRKMGCEP 438


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 225/413 (54%), Gaps = 10/413 (2%)

Query: 38  ISKIM--LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           ISK++    S +  L   L++  ++ S E+V ++L + RN    AF FF WA KQQ Y  
Sbjct: 60  ISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVR 119

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           SVR YHSMI  L K+R++   W L++ MR  +  ++N +T  I++RKY  V  V +A+ T
Sbjct: 120 SVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINT 179

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           F+  +++ +   +  F  LLSALC+ KNV  A  +  C KD++  D+K+++I+L GW   
Sbjct: 180 FHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNV 239

Query: 214 PNLPR-AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              PR A  ++ EM + G   D+V+Y  M+    K G +++ L +   M      P   +
Sbjct: 240 IGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKV 299

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           Y+ +VH     + + +A +    ME+  GI  +V  YN+LI   CKA K +   +V  +M
Sbjct: 300 YNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEM 359

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
             KG+ P  RT +  +  ++  GE  E + +  +M K+ CE   +TY M+I+  C+  + 
Sbjct: 360 LEKGLFPTIRTYHAFMR-ILRTGE--EVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDF 416

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +    +W  MK K   P + ++ V+I+GL   G + ++    ++M +KG+RP+
Sbjct: 417 DNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPN 469



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 39/235 (16%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           +H V +Y SMI   +K      +  L + M+ + +  + + +  ++   A+   V EA  
Sbjct: 259 KHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARN 318

Query: 153 TFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS----IL 206
               M++  G+  N+  +N L+  LCK++   +A+++FD M ++   P  +TY     IL
Sbjct: 319 LMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL 378

Query: 207 LEG------------WGKDPN----------LPRARE------IFREMVDTGCNPDIVTY 238
             G             G +P           L R R+      ++ EM +    PD+ +Y
Sbjct: 379 RTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSY 438

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG----VENRIEDA 289
            +M+  L   G+++EA G  K M     RP   +  ++   +      E RI D+
Sbjct: 439 IVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYAEQRITDS 493



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 53/284 (18%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           Y  M+ +L K  + D A  ++  M     S V   T  I   ++  Y   + +  A++TF
Sbjct: 124 YHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLI---MIRKYCAVHDVGKAINTF 180

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRV--LKDMNSKGVAPNSRTCNIILNGLI 351
              ++  +   +  + +L+ A C+   +KNV     L   N      ++++ NI+LNG  
Sbjct: 181 HAYKRFKLEMGIDDFQSLLSALCR---YKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWC 237

Query: 352 GR-GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL------- 402
              G   EA RV+  M  +  + D  +Y+ MI  + +GG L K  K++  MK        
Sbjct: 238 NVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDR 297

Query: 403 -----------------------------KRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
                                        K   P++ T++ LI  LC      ++  + +
Sbjct: 298 KVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFD 357

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +M+EKG+ P+  T+    ++L + G E+V + L  KM  +  EP
Sbjct: 358 EMLEKGLFPTIRTYHAFMRIL-RTG-EEVFELLA-KMRKMGCEP 398


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 234/436 (53%), Gaps = 8/436 (1%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEK---FRNAGTL--AFCFFKWAEKQQNYEHSV 97
           L+ P + L  +   +   +SP +   V+EK    R+      +  FF W+     +  S 
Sbjct: 119 LTIPDLSLAFSAISAAHPISPSVAHRVIEKCGGVRHGIPFLQSLAFFNWSSSLDGFPASP 178

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNV 156
             Y+ M++   K+RQ+ + W +++ M+++ + + V TF  ++R+Y R     EAV+ FN 
Sbjct: 179 EPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNR 238

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M+ YG T ++ AF+ ++S+LCK +   +AQ  FD +K RF PD   Y+ L+ GW +  ++
Sbjct: 239 MEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDI 298

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+F +M   G  P++ TY I++D LC+ G++  A  +   M    C P +  ++ L
Sbjct: 299 SKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 358

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R E  +  + +M++ G  AD   YN +I + C+    +   ++L  M  KGV
Sbjct: 359 MRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGV 418

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
           APN+ T N I   +    + + A+R++ RM +L C+ +  TY ++++MF +    +   K
Sbjct: 419 APNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLK 478

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLL 454
           + K M   +  P+++T+ +LI+  CD    +++  L+ +M+ EK +RP+   +  + +LL
Sbjct: 479 MKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELL 538

Query: 455 IKEGREDVLKFLQEKM 470
            K G+    + L +KM
Sbjct: 539 RKAGQLKKHEELVDKM 554


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 212/391 (54%), Gaps = 6/391 (1%)

Query: 35  AKSISKIMLSSPKVVLDT---ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           + +I+K++LSSP          L       +P +V  VL++  N G  A  FF + +   
Sbjct: 19  SAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH 78

Query: 92  -NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
             Y H   ++   I+  A++  +  +W L++ MR+ R+  + +TF I+  +YA   K ++
Sbjct: 79  REYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDK 138

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
           AV  F  M ++G  Q+LA+FN +L  LCKSK V KA E+F  ++ RF  D+ TY+++L G
Sbjct: 139 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNG 198

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           W      P+  E+ +EMV+ G NP++ TY  M+    +AG++  A      M    C   
Sbjct: 199 WCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 258

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ +VH +GV   I+ A + F EM + G+L  VA YNA+I   CK +  +N   + +
Sbjct: 259 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 318

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGG 388
           +M  +G  PN  T N+++ GL   GE      + +RM  + CE +  TY MMI+ + +  
Sbjct: 319 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS 378

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           E+EKA  +++ M     +P++ T+++LI+G+
Sbjct: 379 EVEKALGLFEKMGSGDCLPNLDTYNILISGM 409



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 37/265 (13%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P  KT++I+ E +       +A ++F  M + GC  D+ ++  ++DVLCK+      
Sbjct: 115 RIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS------ 168

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
                                         R+E A + F  + +     D   YN ++  
Sbjct: 169 -----------------------------KRVEKAYELFRAL-RGRFSVDTVTYNVILNG 198

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           +C   +      VLK+M  +G+ PN  T N +L G    G+   A+  F  M K  CE D
Sbjct: 199 WCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 258

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT ++  F   GE+++A  V+  M  +  +PS+ T++ +I  LC K  V ++ V+ E
Sbjct: 259 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 318

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEG 458
           +M+ +G  P+  T+  L + L   G
Sbjct: 319 EMVRRGYEPNVTTYNVLIRGLFHAG 343



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 143/303 (47%), Gaps = 4/303 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           I  SP+    V E++ +AG    A   F    +   ++  + +++++++ L K ++ +  
Sbjct: 116 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQ-DLASFNTILDVLCKSKRVEKA 174

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           ++L  A+R +  ++  T+ +I+  +  +++  + +     M + G+  NL  +N +L   
Sbjct: 175 YELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGF 234

Query: 177 CKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            ++  +R A E F  MK R    D  TY+ ++ G+G    + RAR +F EM+  G  P +
Sbjct: 235 FRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSV 294

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY  M+ VLCK   V+ A+ + + M      P    Y+VL+             +    
Sbjct: 295 ATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQR 354

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           ME  G   +   YN +I  + + ++ +    + + M S    PN  T NI+++G+  R  
Sbjct: 355 MENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKR 414

Query: 356 TDE 358
           +++
Sbjct: 415 SED 417



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 100/197 (50%), Gaps = 2/197 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y++M++   +  Q +  W+    M+ +   ++V T+  ++  +    +++ A   F
Sbjct: 223 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 282

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           + M + GV  ++A +N ++  LCK  NV  A  +F+ M  R + P+  TY++L+ G    
Sbjct: 283 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 342

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               R  E+ + M + GC P+  TY +M+    +   V++ALG+ + M S  C P    Y
Sbjct: 343 GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTY 402

Query: 274 SVLVHTYGVENRIEDAV 290
           ++L+    V  R ED V
Sbjct: 403 NILISGMFVRKRSEDMV 419


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 130/404 (32%), Positives = 220/404 (54%), Gaps = 8/404 (1%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMI 104
           S +  L   L++  ++ S E+V ++L + RN    AF FF WA KQQ Y  SVR YHSMI
Sbjct: 58  SDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAGKQQGYVRSVREYHSMI 117

Query: 105 ESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
             L K+R++   W L++ MR  +  ++N +T  I++RKY  V  V +A+ TF+  +++ +
Sbjct: 118 SILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKL 177

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR-ARE 221
              +  F  LLSALC+ KNV  A+ +  C KD +  D+K+++I+L GW      PR A  
Sbjct: 178 EMGIDDFQSLLSALCRYKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPREAER 237

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           ++ EM + G   D+V+Y  M+    K G +++ L +   M      P   +Y+ ++H   
Sbjct: 238 VWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALA 297

Query: 282 VENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             + + +A +    ME+  G+  +V  YN+LI   CKA K +   +V  +M  KG+ P  
Sbjct: 298 KASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTI 357

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
           RT +  +  ++  GE  E + +  +M K+ C+   DTY M+I+  C+  + +    +W  
Sbjct: 358 RTYHAFMR-ILRTGE--EVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNE 414

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           MK K   P + ++ V+I+GL   G + ++    ++M EKG+RP+
Sbjct: 415 MKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEKGMRPN 458



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 105/224 (46%), Gaps = 16/224 (7%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQK 146
           K+++ E   + Y+++I +LAK        +L+  M  ++ +  NV T+  +++   + +K
Sbjct: 278 KKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARK 337

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI---PDSKT 202
            EEA   F+ M + G+   +  ++  +  L      R  +E+F+ + K R +   P   T
Sbjct: 338 TEEAKQVFDEMLEKGLFPTIRTYHAFMRIL------RTGEEVFELLAKMRKMGCQPTVDT 391

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y +L+    +  +      ++ EM + G  PD+ +Y +M+  L   G+++EA G  K M 
Sbjct: 392 YIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMK 451

Query: 263 STVCRPTSFIYSVLVHTYG----VENRIEDAVDTFLEMEKNGIL 302
               RP   +  ++   +      E R+ D+      ++K GI+
Sbjct: 452 EKGMRPNENVEDMIQSWFSGKQYAEQRVIDSKGDVSGVDKGGIV 495



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/350 (19%), Positives = 144/350 (41%), Gaps = 42/350 (12%)

Query: 136 IIMRKYARVQKVEEAVYTFNVM--QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           +++   ++V+   E  +TF V   ++ G  +++  ++ ++S L K +    A  + D M+
Sbjct: 78  LVVEILSQVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMR 137

Query: 194 DRFIP---DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
            +F P   +S+T  I++  +    ++ +A   F           I  +  ++  LC+   
Sbjct: 138 -KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKN 196

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V +A  ++     T          VL     V     +A   ++EM   G+  DV  Y++
Sbjct: 197 VSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSS 256

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           +I  + K      V ++   M  + + P+ +  N +++ L       EA  + + M    
Sbjct: 257 MISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTM---- 312

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                             E EK  +           P++ T++ LI  LC      ++  
Sbjct: 313 ------------------EEEKGME-----------PNVVTYNSLIKPLCKARKTEEAKQ 343

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           + ++M+EKG+ P+  T+    ++L + G E+V + L  KM  +  +P  D
Sbjct: 344 VFDEMLEKGLFPTIRTYHAFMRIL-RTG-EEVFELLA-KMRKMGCQPTVD 390


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 240/440 (54%), Gaps = 9/440 (2%)

Query: 21  RYNSSEPSTEALDAAKS---ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           R  +S+    A D  KS   + K     PK  L+ AL++SG+ + P ++E VL +  +AG
Sbjct: 70  RTKNSKYDEFASDVEKSYRILRKFHSRVPK--LELALNESGVELRPGLIERVLNRCGDAG 127

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFC 135
            L + FF WA KQ  Y HS+  Y SM++ L+K+RQ+  +W L+  MR +  +++  E F 
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           ++++++A    V++A+   + M K+G   +   F  LL ALCK  +V+ A ++F+ M+ R
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F  + + ++ LL GW +   +  A+ +  +M + G  PDIV Y  ++     AG++ +A 
Sbjct: 248 FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAY 307

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M      P +  Y+VL+      +R+E+A+  F+EME+    ADV  Y AL+  F
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 367

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CK  K    Y VL DM  KG+ P+  T   I+     +   +E   +  +M ++    D 
Sbjct: 368 CKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDI 427

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y ++I++ C+ GE+++A ++W  M+     P + TF ++INGL  +G + ++    ++
Sbjct: 428 GIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKE 487

Query: 435 MIEKGIRPSGETFGKLRKLL 454
           M+ +G+  S   +G L+ LL
Sbjct: 488 MVTRGLF-SVSQYGTLKLLL 506



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 184/402 (45%), Gaps = 6/402 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           + PE+   ++++F +A  +        E  +  +E     +  ++++L K    +    L
Sbjct: 181 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240

Query: 120 VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
              MR +  +N+  F  ++  + RV K+ EA Y    M + G   ++  +  LLS    +
Sbjct: 241 FEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANA 300

Query: 180 KNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             +  A ++   M+ R F P++  Y++L++   K   +  A ++F EM    C  D+VTY
Sbjct: 301 GKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTY 360

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             +V   CK G++D+   ++  M      P+   Y  ++  +  +   E+ ++   +M +
Sbjct: 361 TALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQ 420

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
                D+ +YN +I   CK  + K   R+  +M   G++P   T  I++NGL  +G   E
Sbjct: 421 IEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLE 480

Query: 359 AYRVFRRMIK---LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSV 414
           A   F+ M+       +   T  +++    +  +LE A  VW  +  K     ++ ++++
Sbjct: 481 ASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTI 540

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            I+ L  KG   ++C    +MIE    P  +TF KL K L K
Sbjct: 541 WIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKK 582


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 225/413 (54%), Gaps = 3/413 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +D    + K   SS   V+  AL   G+ VS  +VE VL++F N    AF FFKWA+ Q 
Sbjct: 89  IDKISELLKFRHSSADAVVQ-ALGGCGVSVSESLVEQVLKRFSNDWIPAFGFFKWAKAQT 147

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
            Y HS+ +Y+SM++ L K++++ +MW+LV  M R    +++ T   +MR+ AR  + ++A
Sbjct: 148 GYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDA 207

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +  F  M+++GV ++  A N L+ AL K  +V  A ++F   KD  + +  T+++L+ GW
Sbjct: 208 IEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTFNVLIHGW 267

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   +  A +   EM + G  PD+++Y  +V+  C+     +   ++  M+   C P  
Sbjct: 268 CKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNV 327

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++++H  G    I  A++ + +M+ +  + D + Y++LI    KA + K+   V +D
Sbjct: 328 VTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFED 387

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M  +G  P+  T N +++      + ++A ++  +M +  C+ D +TY+ ++KM C+   
Sbjct: 388 MTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNR 447

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           ++    +  +M        + T+S+L++GLC  G +  +C+  E+M+ KG+ P
Sbjct: 448 MKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLVP 500


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 223/430 (51%), Gaps = 8/430 (1%)

Query: 41  IMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY 100
           ++ S PK  L  +L    ++ +PE+V+ VL++    G  A  FFK  E   +Y HS  ++
Sbjct: 57  VLESDPKS-LRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSF 115

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
              I+   ++R Y+ +W LV  MR +R+  + +TF II  ++    K + A+  F  M++
Sbjct: 116 DHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMRE 175

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           +G  Q+L +FN +L  LCKSK V  A   +F  ++ +F  D  +Y+I+  GW      P+
Sbjct: 176 HGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPK 235

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A E+ +EMV+ G  P I TY I++    +AG++ EA      M           Y+ +VH
Sbjct: 236 ALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVH 295

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +GV   I+ A   F EM   GIL   A YNA+I   CK +  +N   + ++M  KG  P
Sbjct: 296 GFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVP 355

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           N  T N+++ GL   G  D+A     RM    CE +  TY + I+ FC  G++EK   ++
Sbjct: 356 NLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMF 415

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV---LLEDMIEKGIRPSGETFGKLRKLL 454
           + M  +  +P++ T++VLI+ +  +    D  V   LL +M+++G  P   TF ++   L
Sbjct: 416 EKMG-QGSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGL 474

Query: 455 IKEGREDVLK 464
           +  G +   K
Sbjct: 475 LLTGNQAFAK 484



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 145/316 (45%), Gaps = 41/316 (12%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKV 147
           ++      + +++++++ L K ++ ++ ++ L   +R K   +V ++ II   +  +++ 
Sbjct: 174 REHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRT 233

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSIL 206
            +A+     M + G+T  +  +N LL    ++  +++A E F  MK+R +  D  TY+ +
Sbjct: 234 PKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTM 293

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK------------------- 247
           + G+G    + RAR++F EMV  G  P   TY  M+ VLCK                   
Sbjct: 294 VHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGY 353

Query: 248 ----------------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
                           AG +D+A+  ++ M +  C P    Y+V +  +     +E  + 
Sbjct: 354 VPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLS 413

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVY---RVLKDMNSKGVAPNSRTCNIILN 348
            F +M + G L ++  YN LI A     K +++    ++L +M  +G  P   T N +LN
Sbjct: 414 MFEKMGQ-GSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLN 472

Query: 349 GLIGRGETDEAYRVFR 364
           GL+  G    A  + R
Sbjct: 473 GLLLTGNQAFAKEILR 488


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 232/436 (53%), Gaps = 8/436 (1%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEK---FRNAGTL--AFCFFKWAEKQQNYEHSV 97
           LS P + ++ +   +   VSP I    +EK    R+      +  FF WA   + +  S 
Sbjct: 84  LSIPDLSIEFSKISTVYSVSPSITRRAIEKCSGVRHGIPFLQSLAFFNWATTLEGFPSSP 143

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNV 156
             Y+ MI+   K+R + + W L++ M+++ + + V TF +++R+Y R     EAV+ FN 
Sbjct: 144 EPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNR 203

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M+ YG   +  +F+ ++S+LCK +   +A+  FD +K +F PD   Y+ L+ GW +  ++
Sbjct: 204 MEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDI 263

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+F +M + G  P++ TY I++D LC+ G++  A  +   M    C P +  ++ L
Sbjct: 264 AKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 323

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R E  +  + +M++ G  AD   YN LI + CK        +VL  M  KGV
Sbjct: 324 MRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGV 383

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
           APN+ T N I   +    + + A+R++ +M +L C  +  TY ++++MF     ++   K
Sbjct: 384 APNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLK 443

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLL 454
           + K M      P+++T+ +LI   C+KG  +++  L+++M+ EK ++P+   +  + +LL
Sbjct: 444 LKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELL 503

Query: 455 IKEGREDVLKFLQEKM 470
              G+    + L EKM
Sbjct: 504 RNAGQLKKHEELVEKM 519


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 230/441 (52%), Gaps = 2/441 (0%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I+ +M +     L+  L      +S  +V  VL++F++A   +  FF+WA     +EH+
Sbjct: 178 AIADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAASDEFEHT 237

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
              Y  M+  L K RQ++ M  LV  M     L ++ F I ++ +A   +++ AV  F +
Sbjct: 238 PVTYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFKIAIKSFAAAGEIKNAVGVFEM 297

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M+ +G    + +FN LL AL +    ++A  +FD M+D++ PD ++Y+ L+  W    NL
Sbjct: 298 MRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQYTPDLRSYTALMLAWCNARNL 357

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++ +M++ G  PD+V +  M+D L +  R  EA+ + + M +    P  + Y++L
Sbjct: 358 VEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTML 417

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +  + +++ A+  F EM+  G   +VA Y  L+  +  A +   V  +L++M  KG 
Sbjct: 418 IRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGC 477

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE-LEKAF 394
            P+ RT N ++  L  R   D+A R++++MI K  E    TY MM+K +  GG       
Sbjct: 478 PPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGC 537

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            VW+ M  K   P +++++V ING    G  +++C  LE+MI+KG++     + K     
Sbjct: 538 AVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKAPQIDYNKFAADF 597

Query: 455 IKEGREDVLKFLQEKMNLLVK 475
            K G+ D+L  L +K+    K
Sbjct: 598 SKAGKPDILYELAQKVKFTGK 618



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 7/287 (2%)

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRV 251
           D F     TY  +L   GK         + +EM   G  C   +  + I +     AG +
Sbjct: 232 DEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAGALC---MDAFKIAIKSFAAAGEI 288

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A+G+ + M           ++ L+     E   ++A   F  M ++    D+  Y AL
Sbjct: 289 KNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRM-RDQYTPDLRSYTAL 347

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           + A+C A       RV  DM  KG+ P+    N +++GL+      EA ++F  M  K  
Sbjct: 348 MLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGP 407

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +  TYTM+I+  C+ G+L+ A + ++ M++    P + T++ L+ G  +   +     
Sbjct: 408 PPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTA 467

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +LE+M +KG  P G T+  L KLL      D    + +KM     EP
Sbjct: 468 MLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEP 514


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 213/415 (51%), Gaps = 6/415 (1%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +DA   I +    + ++ +   L+   I+VS E+V  VL + RN    AF FF WA KQ 
Sbjct: 12  VDAIMDIFRGFRDANRIQVRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQP 71

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT----KRMLNVETFCIIMRKYARVQKV 147
            Y HSVR YHSMI  L K+R++   W L++ MR       ++  +T  I++R+Y  V  V
Sbjct: 72  GYAHSVREYHSMISILGKMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHDV 131

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
            +A+ TF   +++G    L  F  LLSALC+ KNV+ A+ +  C KD F  ++K+++I+L
Sbjct: 132 AKAINTFYAHKRFGFNIGLEEFQSLLSALCRYKNVKDAEYLLFCNKDVFPFNTKSFNIIL 191

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            GW    +L     +++EM   G + D V+Y   +    K   + + L + + M      
Sbjct: 192 NGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKID 251

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P   +Y+ ++H+      +++A D    ME+ GI+A+V  YN++I   CKA +F     V
Sbjct: 252 PDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAV 311

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
            +++  +G+ P  +T +  L  L    E  E  +  R M   C    DTY M+I+ FC+ 
Sbjct: 312 FEELLQRGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTM--GCNPTTDTYIMLIRKFCRW 369

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +L+   ++W  M      P   ++ VLI+GL   G + D+     +M EK + P
Sbjct: 370 RQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLP 424



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 86  WAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYAR 143
           W E  ++   H   +Y S I   +K+R    +  L   M R K   + + +  ++   A+
Sbjct: 207 WKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSLAK 266

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKT 202
            + ++EA      M++ G+  N+  +N ++  LCK++   +A+ +F+ +  R   P  +T
Sbjct: 267 GRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQT 326

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y   L     +  +    E+ ++M   GCNP   TY +++   C+  ++D    I   M 
Sbjct: 327 YHAFLRFLRTEEEI---FELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMS 383

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
                P    Y VL+H   +  ++EDA   +LEM++  +L +
Sbjct: 384 ENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPE 425


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 227/439 (51%), Gaps = 3/439 (0%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +D    I     +SP+ ++  A+D   +RVS  +V+ +L +F +    AF FF WA  Q+
Sbjct: 96  IDEVSRILSSHFASPEAIV-IAMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQE 154

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEA 150
            Y H    Y+ M++ L K +Q+ ++W L+  M     ++++ T   +MR+ A   +  +A
Sbjct: 155 GYCHHADLYNLMVDILGKFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDA 214

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +  FN M ++GV ++  A N LL  LCK K+V++A+ +F  ++    PD  +++ L+ GW
Sbjct: 215 IDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHGW 274

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +   L  AR+  +EM + G +P ++TY  +++  C          I+  M S  CRP  
Sbjct: 275 CQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNV 334

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++++H  G   R ++A+D F +++++G + D + YN++I    +A + ++   V  +
Sbjct: 335 ITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDE 394

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M   G+ P     N +++      + + A ++  +M  + C+ D  TYT ++K+ C+   
Sbjct: 395 MCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQW 454

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++    +  +M  K   P   T+ +L+  LC  G  + SC+ LE+M+ KG  P  ETF  
Sbjct: 455 MKILPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMPKQETFDL 514

Query: 450 LRKLLIKEGREDVLKFLQE 468
           + + L K       K +Q 
Sbjct: 515 VMEKLDKGNLHSAKKKIQH 533


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 200/361 (55%), Gaps = 3/361 (0%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           +P +V  VL++  N G  A  FF + +     Y H   ++   I+  A++  +  +W L+
Sbjct: 53  TPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHIHPTVWSLI 112

Query: 121 NAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           + MR+ R+  + +TF I+  +YA   K ++AV  F  M ++G  Q+LA+FN +L  LCKS
Sbjct: 113 HRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 172

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           K V KA E+F  ++ RF  D+ TY++++ GW      P+A E+ +EMVD G NP++ TY 
Sbjct: 173 KRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYN 232

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            M+    +AG++ +A      M    C      Y+ +VH +GV   I+   + F EM + 
Sbjct: 233 TMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIRE 292

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+L  VA YNA I   CK +  +N   + ++M  KG  PN  T N+++ GL   G+    
Sbjct: 293 GVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRG 352

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             + +RM  + CE +  TY MMI+ + +  E+EKA  +++ M     +P++ T+++LI+G
Sbjct: 353 EELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISG 412

Query: 419 L 419
           +
Sbjct: 413 M 413



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 37/266 (13%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P  KT++I+ E +       +A ++F  M + GC  D+ ++  ++DVLCK+ RV++A
Sbjct: 119 RIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKA 178

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             + +++                                    +    AD   YN ++  
Sbjct: 179 YELFRAL------------------------------------RGRFSADTVTYNVIVNG 202

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           +C   +      VLK+M  +G+ PN  T N +L G    G+  +A+  F  M K  CE D
Sbjct: 203 WCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEID 262

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT ++  F   GE+++   V+  M  +  +PS+ T++  I  LC K  V ++ V+ E
Sbjct: 263 VVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFE 322

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR 459
           +M+ KG  P+  T+  L + L   G+
Sbjct: 323 EMVRKGYEPNVTTYNVLIRGLFHAGK 348



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 129/271 (47%), Gaps = 5/271 (1%)

Query: 93  YEHS----VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
           +EH     + +++++++ L K ++ +  ++L  A+R +   +  T+ +I+  +  +++  
Sbjct: 151 HEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTP 210

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILL 207
           +A+     M   G+  NL  +N +L    ++  +R+A E F  MK R    D  TY+ ++
Sbjct: 211 KALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVV 270

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+G    + R R +F EM+  G  P + TY   + VLCK   V+ A+ + + M      
Sbjct: 271 HGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYE 330

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+VL+       +     +    ME  G   +   YN +I  + + ++ +    +
Sbjct: 331 PNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGL 390

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            + M +    PN  T NI+++G+  R  +++
Sbjct: 391 FEKMGTGDCLPNLDTYNILISGMFVRKRSED 421



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 2/197 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y++M++   +  Q +  W+    M+ +   ++V T+  ++  +    +++     F
Sbjct: 227 NLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVF 286

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + M + GV  ++A +N  +  LCK  +V  A  +F+ M +  + P+  TY++L+ G    
Sbjct: 287 DEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHA 346

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               R  E+ + M + GC P+  TY +M+    +   V++ALG+ + M +  C P    Y
Sbjct: 347 GKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTY 406

Query: 274 SVLVHTYGVENRIEDAV 290
           ++L+    V  R ED V
Sbjct: 407 NILISGMFVRKRSEDMV 423


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 219/439 (49%), Gaps = 33/439 (7%)

Query: 38  ISKIM--LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           IS+I+     P   L+  L     +++P +VE VL++ +N G  A              H
Sbjct: 53  ISRILSDFRDPHHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSA--------------H 98

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV--ETFCIIMRKYARVQKVEEAVYT 153
           S +             Q+ ++WD ++ MR  R   +  E F +I R Y R     +A+  
Sbjct: 99  SSK-------------QFPLIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRA 145

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           F+ M  +GV   +   + LL  LCK K+V++AQE FD +    +P++KTYSIL+ GWG  
Sbjct: 146 FHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDV 205

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +   AR++F EM + GC  D+V Y  +++ LCK G VDEA  + + M S    P +  Y
Sbjct: 206 GDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSY 265

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+ +  Y   N I  A      M +  ++ +V  YN ++   CK+ K    Y++L +M  
Sbjct: 266 SIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIE 325

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +GV+P+  + N I        E ++A R+  RM K  C  D  TY M++KM  + G  ++
Sbjct: 326 RGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDR 385

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
              VW  M+ + F P+  T++V+++G C  KG + ++C   E MI+ GI P   T   LR
Sbjct: 386 VTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLR 445

Query: 452 KLLIKEGREDVLKFLQEKM 470
             +I  G  + +  L  KM
Sbjct: 446 NRVIGLGFSEQIDVLAGKM 464


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 239/449 (53%), Gaps = 15/449 (3%)

Query: 45  SPKVVLDT-ALDQSGI---RVSPEIVEDVLEK---FRNAGTL--AFCFFKWAEKQQNYEH 95
           +P + L   +LD S I   +VSP +V  V+EK    R+   L  +  FF WA  + +Y+H
Sbjct: 89  NPSLTLHALSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDH 148

Query: 96  -SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153
            S   Y+ MI+   K+RQ+ + W L++ M+++ + +++ETF I++R+Y R     EAV+ 
Sbjct: 149 KSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHC 208

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           FN M+ YG   +  AF+ ++S L + +   +AQ  FD +KDRF PD   Y+ L+ GW + 
Sbjct: 209 FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRA 268

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A ++F+EM   G  P++ TY I++D LC+ G++  A  +   M  + C P +  +
Sbjct: 269 GEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +    R E  +  + +M+K G   D   YN LI A C+    +N  +VL  M  
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK 388

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           K    N+ T N I   +  + + + A+R++ +M++  CE +  TY ++++MF      + 
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM 448

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLR 451
             K+ K M  K   P+++T+ +L+   C  G  +++  L ++M+ EK + PS   +  + 
Sbjct: 449 VLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVL 508

Query: 452 KLLIKEGREDVLKFLQEKM--NLLVKEPL 478
             L + G+    + L EKM    LV  PL
Sbjct: 509 AQLRRAGQLKKHEELVEKMIQKGLVARPL 537


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 219/422 (51%), Gaps = 17/422 (4%)

Query: 36  KSISKIM--LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY 93
           K+I  IM  + S    +   L+   I +SPE+V +VL + RN    AF FF WA KQ  Y
Sbjct: 129 KTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGY 188

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEE 149
            HSVR YHSMI  L K+R++   W+L+  MR  R    ++  +T  I++RKY  V  V  
Sbjct: 189 AHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVAR 248

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
           A+ TF   +++     L  F+ LLSALC+ KNV+ A+ +  C KD F  D+K+++I+L G
Sbjct: 249 AINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNG 308

Query: 210 WGKDPNL----PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           W    NL      A  I+ EM+      D+V+YG ++    K+ ++ + L +   M    
Sbjct: 309 WC---NLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRK 365

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P   +Y+ +++       +++AV+    ME N +  DV  YN+LI   CKA+K     
Sbjct: 366 ITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAK 425

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           ++  +M  + ++P  +T +     L  +   +E + +  +M +L C    +TY M+I+ F
Sbjct: 426 QLFDEMLKRHLSPTIQTFHAFFRILRTK---EEVFELLDKMKELRCYPTIETYIMLIRKF 482

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+  +L+  FK+W  M+         ++ VLI+GL   G + ++     +M EKG  P  
Sbjct: 483 CRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEKGFLPEP 542

Query: 445 ET 446
           +T
Sbjct: 543 KT 544


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 246/470 (52%), Gaps = 21/470 (4%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVVLD-TALDQSGIRVSPEIVEDVLEK---FRNA 76
           R N + P+   L+ +       L+ P + LD + +D S  R+SP +V  V+EK    R+ 
Sbjct: 77  RKNPTNPNDAVLNPS-------LTLPALSLDFSQIDAS--RISPSVVRCVIEKCGSVRHG 127

Query: 77  GTL--AFCFFKWAEKQQNYEH-SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVE 132
             L  +  FF WA  + +Y+  S   Y+ MI+   K+RQ+ + W L++ M+++ + +++E
Sbjct: 128 IPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIE 187

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF I++R+Y R     EAV+ FN M+ YG   +  AF+ ++S L + +   +AQ  FD +
Sbjct: 188 TFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL 247

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           KDRF PD   Y+ L+ GW +   +  A ++F++M   G  P++ TY I++D LC+ G++ 
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQIS 307

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  +   M  + C P +  ++ L+  +    R E  +  + +M+K G   D   YN LI
Sbjct: 308 RAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLI 367

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
              C+    +N  +VL  M  K    N+ T N I   +  + + + A+R++ +M++  CE
Sbjct: 368 ETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +  TY ++++MF      +   K+ K M  K   P+++T+ +L+   C  G  +++  L
Sbjct: 428 PNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487

Query: 432 LEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM--NLLVKEPL 478
            ++M+ EK + PS   +  +   L + G+    + L EKM    LV  PL
Sbjct: 488 FKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVTRPL 537


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 221/421 (52%), Gaps = 14/421 (3%)

Query: 61  VSPEIVEDVLEKFRNAGTL--------AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           VSP +V  V+EK   +G +        A  FF WA   + +EHS + Y+ MI+   K++Q
Sbjct: 107 VSPAVVRYVIEK---SGAVRHGIPFLPALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQ 163

Query: 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           + + W L++ M+ + + + V TF +++R+Y R     EAV+ FN M+ YG   ++ AF+ 
Sbjct: 164 FGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSN 223

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           ++S LCK +   +AQ  FD +K +F PD   Y+ L+ GW +  ++  A  +FREM   G 
Sbjct: 224 VISILCKKRRAVEAQSFFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGI 283

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P++ TY I++D LC++G++  A  +   M    C P S  ++ L+  +    R E  + 
Sbjct: 284 SPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQ 343

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            + +M++    AD+  YN LI   CK +      +VL  M      PN+ + N I   + 
Sbjct: 344 VYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIA 403

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
              + + A+R+F RM ++ C+ +  TY ++++MF      +  FK+ K M  +   P+ +
Sbjct: 404 KSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFN 463

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
           T+  LI   C  G  + + +   +MI EK I+PS   +  + + L K G+    + L +K
Sbjct: 464 TYRELIALYCGMGHWNHAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDK 523

Query: 470 M 470
           M
Sbjct: 524 M 524



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 147/319 (46%), Gaps = 3/319 (0%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRA 219
           G   +   +N ++    K K    A  + D MK R +  +  T+S+L+  + +      A
Sbjct: 143 GFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEA 202

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
              F  M D GCN DI+ +  ++ +LCK  R  EA     ++      P   +Y+ LVH 
Sbjct: 203 VHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHKF-EPDVIVYTSLVHG 261

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           +     I +A   F EM+  GI  +V  Y+ +I A C++ +    + V  +M   G  PN
Sbjct: 262 WCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPN 321

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
           S T N ++   +  G T++  +V+ +M +L C AD  TY  +I+  C+   L +A KV  
Sbjct: 322 SVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLN 381

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M      P+  +F+ +   +     V+ +  +   M E G +P+  T+  L ++     
Sbjct: 382 SMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPK 441

Query: 459 REDVLKFLQEKMNLLVKEP 477
             D++  L+++M+    EP
Sbjct: 442 SADMIFKLKKEMDEEEVEP 460


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 204/406 (50%), Gaps = 9/406 (2%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS 102
           LS   V +   ++  G++VS E+V +VL + RN    AF FF WA +Q  Y HSVR YH+
Sbjct: 107 LSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQLGYSHSVREYHA 166

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           MI  L K+R++   W L++ MR  +    ++  +T  I++RKY  V  V  A+ TF   +
Sbjct: 167 MISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVHDVGRAINTFYAHK 226

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           ++     +  F  LLSALC+ KNV+ A+ +  C KD F  ++K+++I+L GW      PR
Sbjct: 227 RFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIVLNGWCNVIGSPR 286

Query: 219 -AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  I+REM     + D+V+Y  ++    KAG + +   +   M      P   IY+ ++
Sbjct: 287 EADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVI 346

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   + +A++    ME+ GI  +   YN+LI   C+A K      +  +M   G +
Sbjct: 347 FALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHS 406

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P  RT +     L      +E + +   M KL C    DTY M+I+ FC+  + +  FK+
Sbjct: 407 PTIRTYHAFFRSL---RTGEEVFALLENMRKLGCHPTIDTYIMLIRKFCRWRQFDDVFKL 463

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           W  +      P   ++ VLI+GL   G + ++     DM EK + P
Sbjct: 464 WNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQLLP 509



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 105/213 (49%), Gaps = 4/213 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++  I+  Y++   + +    +N M++ G+  +   +N ++ AL K ++V +A  + 
Sbjct: 303 DVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSEAINLM 362

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+++ I P++ TY+ L++   +   +  AR +F EM+  G +P I TY      L + 
Sbjct: 363 KTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFFRSL-RT 421

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G  +E   ++++M    C PT   Y +L+  +    + +D    + ++ +NG+  D + Y
Sbjct: 422 G--EEVFALLENMRKLGCHPTIDTYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSY 479

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             LI       K +  Y+   DM  K + P+ +
Sbjct: 480 IVLIHGLFLNGKLEEAYKFYADMKEKQLLPDPK 512



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 22/230 (9%)

Query: 86  WAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT------KRMLNVETFCIIM 138
           W E  ++   + V +Y S+I   +K      ++ L N M+       +++ N   F +  
Sbjct: 292 WREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFAL-- 349

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI 197
              A+ + V EA+     M++ G+  N   +N L+  LC+++ + +A+ +FD M +    
Sbjct: 350 ---AKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHS 406

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIF---REMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           P  +TY           +L    E+F     M   GC+P I TY +++   C+  + D+ 
Sbjct: 407 PTIRTYHAFFR------SLRTGEEVFALLENMRKLGCHPTIDTYIMLIRKFCRWRQFDDV 460

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
             +   +      P    Y VL+H   +  ++E+A   + +M++  +L D
Sbjct: 461 FKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQLLPD 510


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 224/432 (51%), Gaps = 6/432 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ----NYEHSVRAYHSMIE 105
           L+ AL      +S  +V  VL++F++A   +  FF+WA         + H+   Y  M+ 
Sbjct: 170 LEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVH 229

Query: 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
            L K RQ+Q M  L+  M  +  L ++ F I ++ +A   +++ AV  F +M+ +G    
Sbjct: 230 ILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDG 289

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           + +FN LL AL +    R+A ++FD M+DR+ PD ++Y+ L+  W    NL  A  ++ E
Sbjct: 290 VESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNE 349

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M++ G  PD+V +  M++ L +  R  EA+ + + M +    P  + Y++L+  +    +
Sbjct: 350 MLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGK 409

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           ++ A+  F EM+  G   DVA Y  L+  +  A +   V  +L++M  KG  P+ RT N 
Sbjct: 410 MDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNA 469

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE-LEKAFKVWKYMKLK 403
           ++  L  R   D+A R++++MIK   E    TY MM+K +  GG        VW+ M  K
Sbjct: 470 LIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRK 529

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
              P +++++V ING    G   ++C  +E+MI+KG++     + K      K G+ D+L
Sbjct: 530 GICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDIL 589

Query: 464 KFLQEKMNLLVK 475
             L +K+    K
Sbjct: 590 YELAQKVKFTGK 601


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 223/431 (51%), Gaps = 13/431 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEK---FRNA----GTLAFCFFKWAEKQQNYEHSVRAYHS 102
            D +   S   VS  IV  V+EK    R+      TLAF  F WA   + + HS   Y  
Sbjct: 94  FDFSQISSADSVSSAIVRRVIEKCGGVRHGIPFPQTLAF--FNWATNLEEFGHSPEPYME 151

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           MI+   K+RQ+ + W L++ M+T+ + + VETF I++R+Y +     EAV+ FN M+ YG
Sbjct: 152 MIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYG 211

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
              +  AF+ ++S+L K +   +AQ  FD +KDRF PD   Y+ L+ GW +  N+  A  
Sbjct: 212 CKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAER 271

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +F EM   G  P++ TY I++D LC++G++  A  +   M    C P +  ++ L+  + 
Sbjct: 272 VFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHV 331

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              R E  +  + +M++ G   D   YN LI + C+ +  +   ++L  +  KG   N+ 
Sbjct: 332 KAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSV-KKGCNLNAS 390

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           + N I   +   G+ + A+R+F +M  L C  +  TY ++++MF      +   K+ K M
Sbjct: 391 SFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEM 450

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGR 459
                 P+ +T+ VLI+  C  G  +++    ++MI EK +RPS   +  + + L K G+
Sbjct: 451 DENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQ 510

Query: 460 EDVLKFLQEKM 470
               + L EKM
Sbjct: 511 LKKHEELVEKM 521


>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 481

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 227/438 (51%), Gaps = 10/438 (2%)

Query: 34  AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY 93
           +A+++S I+       +++AL  +GI ++ +I+ +VL+   +    A  FF+WA +    
Sbjct: 38  SARTLSDILTRVSPHDMESALSSTGINLTCDIIHEVLKLSYSNPASAVEFFRWAGRSGT- 96

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
            H+  +++ M++ L K + ++ MWD + +M+ + +L++ TF  +   Y +     EA+ +
Sbjct: 97  -HTPYSWNLMVDLLGKNQLFEAMWDAIRSMKQENVLSMATFASVFGSYCKAGSFSEAIMS 155

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
           F++M KYG+ Q++ A N LLSA+C   N   KA E FD +K +  PD  TY+ILLEGW K
Sbjct: 156 FDIMDKYGIQQDVIAVNSLLSAICNEDNQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEK 215

Query: 213 DPNLPRAREIFREMV-DTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           + N  +A+ IF EMV   G +P+ +  Y   +++L +  + D+A   ++ M    C P  
Sbjct: 216 EGNAAKAKNIFGEMVIHVGWSPENMPAYNAFLNLLVRESQTDDAFDFLRLMKEKGCLPGL 275

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             YS  +      N +  AV  +  M   G++ ++ MYN++IG  C  N   N +R+  D
Sbjct: 276 KFYSDALDMLLKRNDVLHAVPMWDIMVDTGLMPNLLMYNSMIGLLCNNNDIDNAFRLFDD 335

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY---TMMIKMFCQG 387
           M   G  P+  T  +I   L+   +  +A   F  MIK    +  T+      I MF  G
Sbjct: 336 MVFHGAFPDFLTYKMIFRCLVKNKKVSQAASFFHEMIK--NENPPTHLDCAAAITMFMGG 393

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            + E A ++W YM   + +P   + + L+ GL + G +S+     EDM+++ I     T 
Sbjct: 394 DDPEMAIEIWNYMVDDQELPLDESANALLVGLGNLGRLSEVSRFAEDMLDRRINIHESTM 453

Query: 448 GKLRKLLIKEGREDVLKF 465
            KL+    KEGR    +F
Sbjct: 454 AKLKASFYKEGRSSRDRF 471


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 216/407 (53%), Gaps = 3/407 (0%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           ALD SG RVS  +V  VL++F N    A+ FF WA+KQ  Y HS   Y+ M++ L K ++
Sbjct: 167 ALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKE 226

Query: 113 YQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           + +MW LV  M R +  + ++T   +MR++A+ Q+ E+AV  F  M KYGV ++ AA N 
Sbjct: 227 FDLMWKLVKEMKRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNK 286

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           LL AL K +++  A  + D  K      S +++IL+ GW K  N  +AR++  E  + G 
Sbjct: 287 LLDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGF 346

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD+ TY   ++  C      +   +++ M    C P +  Y++L+  YG   ++  A++
Sbjct: 347 EPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALE 406

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            +  M+K+GI+ D   Y++L+    KA + K+   V  DM  +GV  +  T N +++   
Sbjct: 407 EYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTAC 466

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
              + + A R+ + M +  C+ D  TY  ++KM C+   ++    +  +M      P   
Sbjct: 467 AHSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRG 526

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-RKLLIK 456
           T+++L+  L + G + ++C   E+M+ KG  P   T   L RKL IK
Sbjct: 527 TYTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLTRKLEIK 573



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 46/277 (16%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVHTYGVENRIED 288
           +P++  Y +MVD+L KA   D    +VK M   +  VC  T    S ++  +    R ED
Sbjct: 210 SPEV--YNLMVDILGKAKEFDLMWKLVKEMKRIEGYVCLDT---MSKVMRRFAKAQRHED 264

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           AV+ F  M K G+  D A  N L+ A  K    +  + VL +  S  V  +S + NI++N
Sbjct: 265 AVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKS-SVPLSSPSFNILIN 323

Query: 349 GLIGRGETDEAYRV----------------------------FRRMIKL--------CEA 372
           G       ++A +V                            FR++ ++        C  
Sbjct: 324 GWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPP 383

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +A TYT+++  + + G+L KA + ++ MK    +P    +S L+  L   G + D+C + 
Sbjct: 384 NAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVF 443

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQE 468
           +DM ++G+     T+  +        +E+  L+ L+E
Sbjct: 444 DDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKE 480



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 124/306 (40%), Gaps = 56/306 (18%)

Query: 19  LRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           +RR+  ++   +A++A + + K  +      L+  LD      S EI  +VL++F+++  
Sbjct: 253 MRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKSSVP 312

Query: 79  LAFCFFK-----WAE--------------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           L+   F      W +              K+  +E  V  Y++ IES    + ++ + ++
Sbjct: 313 LSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEV 372

Query: 120 VNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           +  MR      N  T+ I++  Y +  ++ +A+  +  M+K G+  +   ++ L+  L K
Sbjct: 373 LEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGK 432

Query: 179 SKNVRKAQEIFDCMKDRFI------------------------------------PDSKT 202
           +  ++ A E+FD M  + +                                    PD +T
Sbjct: 433 AGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQT 492

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y  LL+   K   +   + +   M      PD  TY ++V  L  +G++ EA    + M 
Sbjct: 493 YHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMV 552

Query: 263 STVCRP 268
           S    P
Sbjct: 553 SKGFTP 558


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 223/431 (51%), Gaps = 13/431 (3%)

Query: 50   LDTALDQSGIRVSPEIVEDVLEK---FRNA----GTLAFCFFKWAEKQQNYEHSVRAYHS 102
             D +   S   VS  IV  V+EK    R+      TLAF  F WA   + + HS   Y  
Sbjct: 1126 FDFSQISSADSVSSAIVRRVIEKCGGVRHGIPFPQTLAF--FNWATNLEEFGHSPEPYME 1183

Query: 103  MIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
            MI+   K+RQ+ + W L++ M+T+ + + VETF I++R+Y +     EAV+ FN M+ YG
Sbjct: 1184 MIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYG 1243

Query: 162  VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
               +  AF+ ++S+L K +   +AQ  FD +KDRF PD   Y+ L+ GW +  N+  A  
Sbjct: 1244 CKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAER 1303

Query: 222  IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
            +F EM   G  P++ TY I++D LC++G++  A  +   M    C P +  ++ L+  + 
Sbjct: 1304 VFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHV 1363

Query: 282  VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
               R E  +  + +M++ G   D   YN LI + C+ +  +   ++L  +  KG   N+ 
Sbjct: 1364 KAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVK-KGCNLNAS 1422

Query: 342  TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
            + N I   +   G+ + A+R+F +M  L C  +  TY ++++MF      +   K+ K M
Sbjct: 1423 SFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEM 1482

Query: 401  KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGR 459
                  P+ +T+ VLI+  C  G  +++    ++MI EK +RPS   +  + + L K G+
Sbjct: 1483 DENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQ 1542

Query: 460  EDVLKFLQEKM 470
                + L EKM
Sbjct: 1543 LKKHEELVEKM 1553


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 224/433 (51%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           L+  LDQ G+ ++ ++V +VL +       +F FF WA  Q+NY H   AY+ MI+ L  
Sbjct: 16  LEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILTS 75

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV- 162
              K RQ++I+ D+++ M+   K ++ VE    I+R Y   +K    V  F   ++  V 
Sbjct: 76  TKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNY--TEKYLTRVQKFAKKKRIRVK 133

Query: 163 TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           TQ  + AFN LL ALCK      A+ +F  +K++  PD+ TY+++  GW +  N  R  +
Sbjct: 134 TQPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMK 193

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM+  G  PD  TY   +D  C+AG V+EA  + + M    ST+  PT+  Y++++ 
Sbjct: 194 VLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIG 253

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                NR+++      +M  +G L DV+ +  LI   C A K    YR L++M +KG  P
Sbjct: 254 ALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPP 313

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L     ++EA R++ RMI+  C     T+ M+I MF + G+ + AF+ W
Sbjct: 314 DIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETW 373

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  +     + T+ V+I+GL     V D+C L+ED++ KG++   + F      L   
Sbjct: 374 YEMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSVI 433

Query: 458 GREDVLKFLQEKM 470
           G    +  L E M
Sbjct: 434 GNIRAIHRLSEHM 446



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 5/240 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAVYTF 154
            Y + I++  +        +L   MRTK         +T+ I++    R  +++E     
Sbjct: 209 TYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLL 268

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G   +++ F  L+  +C +  + +A      M ++ + PD  TY+  L+   ++
Sbjct: 269 EDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCEN 328

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  ++  M++ GC P + T+ +++ +  + G  D A      MD   C      Y
Sbjct: 329 KNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWYEMDKRGCAQDVDTY 388

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            V++      N++EDA     ++   G+      +++ +         + ++R+ + M +
Sbjct: 389 IVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSVIGNIRAIHRLSEHMRT 448


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 229/441 (51%), Gaps = 2/441 (0%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I+ ++ S     L+ AL      +   +V  VL +F++A   ++ FF+WA     + H+
Sbjct: 168 AIADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHT 227

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
              Y  M+  L K RQ++ M  ++  M     L+++ F + ++ +A   +++ AV  F +
Sbjct: 228 TITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNAVGVFEL 287

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M+K G    + +FN LL AL K    R+A+++FD M  ++ PD ++Y+ L+  W    NL
Sbjct: 288 MRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNL 347

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++ EM++ G +PD+V +  M++ L +  R  EA+ + + M +    P  + Y++L
Sbjct: 348 VEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTML 407

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +  + +++ A++ F EM++     DVA Y  L+  +  A +   V  VL++M  KG 
Sbjct: 408 IRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGC 467

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG-GELEKAF 394
            P++RT N ++  L  R   D+A R++++MIK   E    TY MM+K +  G        
Sbjct: 468 PPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGC 527

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            VW+ M  +   P +++++V ING    G   ++   +E+MI KG++     + K     
Sbjct: 528 AVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADF 587

Query: 455 IKEGREDVLKFLQEKMNLLVK 475
            K G+ D+L  L +K+    K
Sbjct: 588 SKAGKPDILFELAQKVKFAGK 608


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 129/415 (31%), Positives = 214/415 (51%), Gaps = 9/415 (2%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L+  G+  S E+V +VL + RN    AF FF WA KQ  Y HS+RAYHSMI  L K+R++
Sbjct: 104 LESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGYAHSLRAYHSMISILGKMRKF 163

Query: 114 QIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
              W L++ MR  R    ++   T  I++R+Y  V  V +A+ TF   +++     +  F
Sbjct: 164 DTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGKAINTFYAHKQFKFGVGIEEF 223

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-GKDPNLPRAREIFREMVD 228
             LLSALC+ KNV+ A+++  C ++ F  D+K+++I+L GW     ++  A   +REM +
Sbjct: 224 QNLLSALCRYKNVQDAEQLLFCNRNVFPFDTKSFNIILNGWCNVIGSMREAERFWREMSN 283

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G   D+V+Y  ++    K   +++ L +   M      P   +Y+ +VH     + +++
Sbjct: 284 RGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVYNAVVHALAKASFVKE 343

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A++    ME  GI  D   YN+LI    +A K      V  +M  +G++P  RT +    
Sbjct: 344 ALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFR 403

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            ++  GE  E + +  +M +  C  D DTY M+I+ FC+  +L+  FK+W  M      P
Sbjct: 404 -ILKSGE--EVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGP 460

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
              ++ VLI+GL   G + ++     +M EK   P  +T   L+  +  +   DV
Sbjct: 461 DRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKTEDMLQAWISGKETADV 515


>gi|116790303|gb|ABK25569.1| unknown [Picea sitchensis]
          Length = 541

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 227/439 (51%), Gaps = 8/439 (1%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSV 97
           +S I+   P++ ++ AL++  + VS + VEDVL+    AG  A  FF+WA  +   +HS 
Sbjct: 100 VSNILKKPPRMGVENALNELRLGVSIQFVEDVLKLSYGAGMEAVKFFRWAGLKLTRKHSP 159

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            A++ +++ L K + +  MWD +  M+ +  + +E F  +   Y +  K++EA  TF VM
Sbjct: 160 LAWNLLVDLLGKEKLFDAMWDCIKVMKNEGTVPMEIFSSVFGNYVQAGKLDEAKMTFEVM 219

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           ++YG   ++ A N  +SALC+ K  + A E FD +K R  PD+ TY+++LEGW  + N+ 
Sbjct: 220 EQYGCRHDVVALNCYISALCRYKQAKAALEFFDRVKARIAPDADTYALMLEGWEIEGNVS 279

Query: 218 RAREIFREM-VDTGCNPDIVT-YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
            A+  F EM V  G  P+  + Y   +  L    +V+EAL  +  M S  C P    +  
Sbjct: 280 MAKTTFGEMIVHLGWVPNNTSAYNAFLSTLVNGFQVEEALKFLVMMKSLKCLPDLGFFRN 339

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY--RVLKDMNS 333
            +         ++A   +  M ++GI+ D+  YN +IG  C  N  +  +  R+L +M  
Sbjct: 340 TLQLLYQRKDTKNAYGLWELMRQSGIVPDLPTYNTMIGVCCSVNPIQVDFADRLLVEMVC 399

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELE 391
            G  P+ R+ N I   LI   + +EA  +FR M K   C   A+ Y   IKM+ +  + +
Sbjct: 400 NGAFPDFRSYNTIFEALIIARKVEEASSIFREMTKNEFCPLYAN-YVRAIKMYFEVEDPD 458

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +WK+M  K   P     + LI+G CD G VS++     + I +G+    ET  KL+
Sbjct: 459 MAVIMWKHMIQKAIFPKSDCAATLIDGFCDLGRVSEALKYSLETINRGVEIPVETMTKLK 518

Query: 452 KLLIKEGREDVLKFLQEKM 470
               + G++D    L++KM
Sbjct: 519 NAR-QAGKQDAYGQLEKKM 536


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 220/410 (53%), Gaps = 14/410 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ AL Q GI +S  +V  VL + R    +A  FF WA  Q++Y H   AY+ M++ L+ 
Sbjct: 10  MEKALGQLGIPLSTPLVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSS 69

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV- 162
              K++Q++I+ D++  M+   K  + VE   +I+RKY   +K    V  F   ++  V 
Sbjct: 70  TRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYT--EKYLTHVQKFARKRRIRVK 127

Query: 163 TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           TQ  + AFN LL ALCK   V  A+ ++  M+    P+++TY+I + GW +  N  R  +
Sbjct: 128 TQPEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVRNPTRGMK 187

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EMV+ G  PD   Y   +D  CKAG V EA+ + + M    S++  PT+  Y++++ 
Sbjct: 188 LLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIV 247

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                +R+E+       M  +G L DV  Y  +I   C   K    Y+ L++M +K   P
Sbjct: 248 ALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRP 307

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L    ++++A +++ RMI+L C     TY M+I MF +  + + AF+ W
Sbjct: 308 DIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETW 367

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + M  +   P + T+SV+I+GL +   V D+C LLE++I KGI+   + F
Sbjct: 368 QEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKLPYKKF 417



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 149/313 (47%), Gaps = 11/313 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           + A++ ++++L K    +    L   MR     N ET+ I +  + RV+     +     
Sbjct: 132 INAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVRNPTRGMKLLEE 191

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGK 212
           M + G   +  A+N  +   CK+  V +A ++F+ M+ +      P +KTY+I++    +
Sbjct: 192 MVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQ 251

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +    ++   M+ +GC PD+ TY  +++ +C  G++DEA   ++ M +   RP    
Sbjct: 252 HDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVT 311

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+  +       + EDA+  +  M +   +  V  YN LI  F + +     +   ++M+
Sbjct: 312 YNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDPDGAFETWQEMD 371

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEA----YRVFRRMIKLCEADADTYTMMIKMFCQGG 388
           ++G  P+  T +++++GL    + ++A      V  + IKL     D++ M + +    G
Sbjct: 372 NRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKLPYKKFDSFLMQLSVI---G 428

Query: 389 ELEKAFKVWKYMK 401
           +L+   +V ++M+
Sbjct: 429 DLQAIHRVSEHMR 441



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P+I  + +++D LCK   V++A  + K M  TV +P +  Y++ V  +         + 
Sbjct: 129 QPEINAFNLLLDALCKCCLVEDAETLYKKMRKTV-KPNAETYNIFVFGWCRVRNPTRGMK 187

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA---PNSRTCNIILN 348
              EM + G   D   YN  I  +CKA        + + M +KG +   P ++T  II+ 
Sbjct: 188 LLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIV 247

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L      +E +++   MI   C  D  TY  +I+  C  G++++A+K  + M  K + P
Sbjct: 248 ALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRP 307

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            + T++  +  LCD     D+  L   MIE    PS +T+  L
Sbjct: 308 DIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNML 350


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 234/432 (54%), Gaps = 11/432 (2%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMI 104
           SP+ V + AL+    RVS  +V  +L++F N    A+  FKWA+ Q  Y HS  +Y+SM+
Sbjct: 156 SPENVAE-ALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMV 214

Query: 105 ESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           + L K + +++MW+LV+ M      +++ET   ++R+ AR  + +EA++ F  ++KYG++
Sbjct: 215 DILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGIS 274

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
            +  A N L+ AL K  +V  A  +F  +K     +  ++++L+ G+ K   L  A +I 
Sbjct: 275 TDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIM 334

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            E+  +G  PD+++Y   ++  C+         ++  M+   C+P    +++++H  G  
Sbjct: 335 GEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKA 394

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            +I +A+  + +M+K G + D + Y++LI    KA +  +V  +++DM  +GV P+  T 
Sbjct: 395 KQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTY 454

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N +++      + + A  +  +M ++ C+ D  TY  ++KMFC+    +K  KV K++  
Sbjct: 455 NTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCR----KKRMKVLKFLLD 510

Query: 403 KRFIPSMH----TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
             F   +     T+++L+ GLC+ G +  +C    +M+ K + P   TF  L++ L ++ 
Sbjct: 511 HMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEELERKS 570

Query: 459 REDVLKFLQEKM 470
             + +K ++  M
Sbjct: 571 MLEEMKIIENLM 582



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 150/365 (41%), Gaps = 51/365 (13%)

Query: 19  LRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           +RR   +    EA+ A ++I K  +S+    ++  +D     V    VED    FR    
Sbjct: 249 IRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDA---LVKEASVEDAHNVFRE--- 302

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
                                                       ++     N+ +F +++
Sbjct: 303 --------------------------------------------LKCSIPFNLASFNVLI 318

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
             Y + +K++EA      ++K G+  ++ ++   + A C+ K+ R   ++   M+ +   
Sbjct: 319 HGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCK 378

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T++I++   GK   +  A +++ +M   GC PD   Y  ++ +L KAGR+ +   I
Sbjct: 379 PNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEI 438

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           V+ M+     P    Y+ L+      ++ E A+   L+ME+     D+  Y+ L+  FC+
Sbjct: 439 VEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCR 498

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
             + K +  +L  M    V+  + T  I++ GL   G+   A   F  M+       D+ 
Sbjct: 499 KKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDST 558

Query: 378 TMMIK 382
             M+K
Sbjct: 559 FKMLK 563



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 38/312 (12%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREM 226
           ++N ++  L K+KN R   E+ D M       S +T S ++    +      A   FR +
Sbjct: 209 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 268

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI-YSVLVHTYGVENR 285
              G + D     +++D L K   V++A  + + +  ++  P +   ++VL+H Y    +
Sbjct: 269 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSI--PFNLASFNVLIHGYCKAKK 326

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +++A     E+EK+G+  DV  Y A I A C+   F+NV +VL  M  KG  PN  T  I
Sbjct: 327 LDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTI 386

Query: 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           I++  +G+ +                                 ++ +A KV++ MK +  
Sbjct: 387 IMHA-LGKAK---------------------------------QINEALKVYEKMKKEGC 412

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +P    +S LI  L   G ++D   ++EDM ++G+ P   T+  L        +E+    
Sbjct: 413 VPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALT 472

Query: 466 LQEKMNLLVKEP 477
           L  KM  +  +P
Sbjct: 473 LLLKMEEVSCKP 484


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 234/432 (54%), Gaps = 11/432 (2%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMI 104
           SP+ V + AL+    RVS  +V  +L++F N    A+  FKWA+ Q  Y HS  +Y+SM+
Sbjct: 179 SPENVAE-ALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMV 237

Query: 105 ESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           + L K + +++MW+LV+ M      +++ET   ++R+ AR  + +EA++ F  ++KYG++
Sbjct: 238 DILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGIS 297

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
            +  A N L+ AL K  +V  A  +F  +K     +  ++++L+ G+ K   L  A +I 
Sbjct: 298 TDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIM 357

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            E+  +G  PD+++Y   ++  C+         ++  M+   C+P    +++++H  G  
Sbjct: 358 GEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKA 417

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            +I +A+  + +M+K G + D + Y++LI    KA +  +V  +++DM  +GV P+  T 
Sbjct: 418 KQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTY 477

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N +++      + + A  +  +M ++ C+ D  TY  ++KMFC+    +K  KV K++  
Sbjct: 478 NTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCR----KKRMKVLKFLLD 533

Query: 403 KRFIPSMH----TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
             F   +     T+++L+ GLC+ G +  +C    +M+ K + P   TF  L++ L ++ 
Sbjct: 534 HMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEELERKS 593

Query: 459 REDVLKFLQEKM 470
             + +K ++  M
Sbjct: 594 MLEEMKIIENLM 605



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 150/365 (41%), Gaps = 51/365 (13%)

Query: 19  LRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           +RR   +    EA+ A ++I K  +S+    ++  +D     V    VED    FR    
Sbjct: 272 IRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDA---LVKEASVEDAHNVFRE--- 325

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
                                                       ++     N+ +F +++
Sbjct: 326 --------------------------------------------LKCSIPFNLASFNVLI 341

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
             Y + +K++EA      ++K G+  ++ ++   + A C+ K+ R   ++   M+ +   
Sbjct: 342 HGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCK 401

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T++I++   GK   +  A +++ +M   GC PD   Y  ++ +L KAGR+ +   I
Sbjct: 402 PNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEI 461

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           V+ M+     P    Y+ L+      ++ E A+   L+ME+     D+  Y+ L+  FC+
Sbjct: 462 VEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCR 521

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
             + K +  +L  M    V+  + T  I++ GL   G+   A   F  M+       D+ 
Sbjct: 522 KKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDST 581

Query: 378 TMMIK 382
             M+K
Sbjct: 582 FKMLK 586



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 38/312 (12%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREM 226
           ++N ++  L K+KN R   E+ D M       S +T S ++    +      A   FR +
Sbjct: 232 SYNSMVDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNI 291

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI-YSVLVHTYGVENR 285
              G + D     +++D L K   V++A  + + +  ++  P +   ++VL+H Y    +
Sbjct: 292 EKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSI--PFNLASFNVLIHGYCKAKK 349

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +++A     E+EK+G+  DV  Y A I A C+   F+NV +VL  M  KG  PN     +
Sbjct: 350 LDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN-----V 404

Query: 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           I                             T+T+++    +  ++ +A KV++ MK +  
Sbjct: 405 I-----------------------------TFTIIMHALGKAKQINEALKVYEKMKKEGC 435

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +P    +S LI  L   G ++D   ++EDM ++G+ P   T+  L        +E+    
Sbjct: 436 VPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALT 495

Query: 466 LQEKMNLLVKEP 477
           L  KM  +  +P
Sbjct: 496 LLLKMEEVSCKP 507


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 212/413 (51%), Gaps = 11/413 (2%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L+   ++ S E+V +VL + RN    AF FF WA KQ  Y+HSVR YHSMI  L K+R++
Sbjct: 122 LEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPGYDHSVREYHSMISVLGKMRRF 181

Query: 114 QIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
              W LV  MR  +    ++  +T  I++RKY  V  V  A+ TF   +++     L  F
Sbjct: 182 DTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEF 241

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR-AREIFREMVD 228
            GLLSALC+ KNV+ A+ +  C K+ F  D+K+++I+L GW       R A  I+ EM  
Sbjct: 242 QGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSARNAERIWEEMSK 301

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
                D+V+Y  ++    K+ ++   L + + M      P   +Y+ ++ +      +++
Sbjct: 302 RRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKE 361

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           AV+  ++ME N +  D   YN+LI   CKA K      +   M  +G++P+ RT +    
Sbjct: 362 AVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFR 421

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L  +   +E + +  +M +L C    +TY M+I+ FC+  +L++  ++W  M+      
Sbjct: 422 ILRVK---EEVFELLDKMKELGCNPTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGH 478

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
              ++ VLI+GL     V ++     +M EKG  P  +T   L+  L   GR+
Sbjct: 479 DRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTESMLQAWL--SGRQ 529



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           R  + +W+ ++  R +   +V ++  I+  Y++  K+   +  F  M+K  +T +   +N
Sbjct: 290 RNAERIWEEMSKRRIQH--DVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYN 347

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            ++ +L K++ V++A  +   M+D  + PD+ TY+ L++   K   +  A+EIF  M++ 
Sbjct: 348 AVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFNVMLER 407

Query: 230 GCNPDIVTYGIMVDVLCKAGRV-DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           G +P I T+     +L    RV +E   ++  M    C PT   Y +L+  +    ++++
Sbjct: 408 GISPSIRTFHAFFRIL----RVKEEVFELLDKMKELGCNPTIETYIMLIRKFCRWRQLDE 463

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
               +  M ++GI  D + Y  LI       K +  Y+   +M  KG  P  +T +++  
Sbjct: 464 VKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTESMLQA 523

Query: 349 GLIGRGETD 357
            L GR  TD
Sbjct: 524 WLSGRQVTD 532


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 228/441 (51%), Gaps = 2/441 (0%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I+ ++ S     L+ AL      +   +V  VL +F++A   ++ FF+WA     + H+
Sbjct: 168 AIADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHT 227

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
              Y  M+  L K RQ++ M  ++  M     L+++ F + ++ +A   +++ AV  F +
Sbjct: 228 TITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNAVGVFEL 287

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M+K G    + +FN LL AL K    R+A+++FD M  ++ PD ++Y+ L+  W    NL
Sbjct: 288 MRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNL 347

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++ EM++ G +PD+V +  M++ L +  R  EA+ + + M +    P  + Y++L
Sbjct: 348 VEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTML 407

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +  + +++ A++ F EM++     DVA Y  L+  +  A +   V  VL++M  KG 
Sbjct: 408 IRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGC 467

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG-GELEKAF 394
            P++RT N ++  L  R   D+A R++++MIK   E    TY MM+K +  G        
Sbjct: 468 PPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGC 527

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            VW+ M  +   P +++++V IN     G   ++   +E+MI KG++     + K     
Sbjct: 528 AVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADF 587

Query: 455 IKEGREDVLKFLQEKMNLLVK 475
            K G+ D+L  L +K+    K
Sbjct: 588 SKAGKPDILFELAQKVKFAGK 608


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 220/426 (51%), Gaps = 8/426 (1%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK 85
           +P  E     +++ K    S    ++ AL Q  + ++ ++V DVL++ R+    A+ FF 
Sbjct: 81  DPDGETALEVQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFN 140

Query: 86  WAEK---QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKY 141
           WA +   +  Y      ++ +++ L ++R++  M  L + M + K ++N  TF +++ +Y
Sbjct: 141 WASRCGIESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRY 200

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
           A   K EEAV  FN  +  G   +L AF  LL +LC+ K+V  A+ +F   K+ F PD K
Sbjct: 201 AAAHKTEEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIK 260

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           + +++L GW    +L  A+  + +++ + C PD  TYGI ++ L KAG++  A+ + ++M
Sbjct: 261 SMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAM 320

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C P   I + ++     + RI +A++   EM +     DVA YN+LI   CK  +F
Sbjct: 321 WEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRF 380

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMM 380
           + VY +L DM  KG  PN+RT   +L       + +E   +  RM +  C  ++D Y ++
Sbjct: 381 EKVYELLDDMEQKGCLPNARTYGYLLKST---KKPEEVPGILERMERNGCRMNSDCYNLI 437

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +K++   G   K       M+     P   T++++I+GL DKG + D+    + M   G+
Sbjct: 438 LKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 497

Query: 441 RPSGET 446
            P   T
Sbjct: 498 VPEPRT 503



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 3/244 (1%)

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +++G +P    +  ++D+L +  R  E   +   M           + VL++ Y   ++ 
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKT 206

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           E+AV  F + +  G   D+  +  L+ + C+  K   +   L         P+ ++ N+I
Sbjct: 207 EEAVKIFNKRKGLGFELDLIAFQTLLMSLCRY-KHVEMAEFLFHSKKNEFPPDIKSMNVI 265

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           LNG    G   EA R +  +I   C+ D  TY + I    + G+L  A K+++ M  K  
Sbjct: 266 LNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGC 325

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLK 464
            P +   + +I+ LC K  + ++  +L +M E+  +P   T+  L K L K  R E V +
Sbjct: 326 NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYE 385

Query: 465 FLQE 468
            L +
Sbjct: 386 LLDD 389



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 38/294 (12%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G +      N +L  L + +   +  ++FD M K + + + +T+ +LL  +        A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEA 209

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            +IF +    G   D++ +  ++  LC+   V+ A  +  S  +    P     +V+++ 
Sbjct: 210 VKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFP-PDIKSMNVILNG 268

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           + V   + +A   + ++  +    D   Y   I +  KA K     ++ + M  KG  P+
Sbjct: 269 WCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPD 328

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
              CN I++ L  +    EA  V R M +  C+ D  TY  +IK  C+    EK ++   
Sbjct: 329 VAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYE--- 385

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
                                           LL+DM +KG  P+  T+G L K
Sbjct: 386 --------------------------------LLDDMEQKGCLPNARTYGYLLK 407


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 234/461 (50%), Gaps = 18/461 (3%)

Query: 27  PSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFF 84
           PS +    A  ISKI+L   +P   ++++L  +GI +S  +V   L + RN   +A  FF
Sbjct: 45  PSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFF 104

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYAR 143
            WA+ Q ++ H V +Y+ +I+ LAK+RQ+ + W  +  M    +     TF I++R+   
Sbjct: 105 LWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVS 164

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAA--FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
                +AV  F+ M  + V ++  +  F  LL  L K   V+ A +IF+  K +F  ++K
Sbjct: 165 AGLTRQAVRAFDDMSCF-VEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAK 223

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR----------V 251
            Y+IL+ GW K   +  A  +  EMV+ G   ++VTY ++++ +C+             +
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDRFERTI 283

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A  ++  M      P    YS+++H Y   ++ E  +D    M+  GI   VA Y ++
Sbjct: 284 RDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSV 343

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--L 369
           +   C   + ++   ++ DM   GV+P++ T N       GR ++D A R++R+M +   
Sbjct: 344 VKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYS 403

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
           C  D  TY +++ MF +   +E   ++W  MK     P + ++++LI+GLC+K    ++C
Sbjct: 404 CLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEAC 463

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
               +MIEKG  P   TF  L + LI+       + L++K+
Sbjct: 464 HFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKL 504



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 99/213 (46%), Gaps = 2/213 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++ I++  Y+R  K E  +    +M+  G+   +A +  ++  LC    +  A+E+ 
Sbjct: 301 DVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELV 360

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNPDIVTYGIMVDVLCK 247
            D +KD   P + TY+   + +    +   A  ++R+M +   C PD+ TY I+V +  K
Sbjct: 361 SDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVK 420

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             R++    I   M ++   P    Y++L+H    + + ++A   F+EM + G L     
Sbjct: 421 LNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKIT 480

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
           +  L     +++  K   R+ K +  + +   S
Sbjct: 481 FETLYRGLIQSDMLKTWRRLKKKLEEESITFGS 513


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/415 (31%), Positives = 219/415 (52%), Gaps = 14/415 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L   L+Q    +  ++V  VL+K R+   +A  FFKWA     Y H  RAY  M++ L +
Sbjct: 99  LAEVLNQFSDEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGR 158

Query: 110 IRQYQIMWDLVNAMRTKRMLNVET---FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           +++ ++M  L + +  +   +V T   F +++ +YA   KV+EA+  F   + YG   +L
Sbjct: 159 MKKVRLMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDL 218

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
             F  LL +LC+ K+V +A+ +F   KD F P  K+++I+L GW    +L  A+ ++ E+
Sbjct: 219 VGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEI 278

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           + +   PD+ TYG  ++ L K+G++  A+ +  SM      P   I + ++     + RI
Sbjct: 279 IASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRI 338

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            +A++ F EM   G  ADVA YN LI  FCK N+ + VY +L DM  KGV+PN+ T + I
Sbjct: 339 PEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYI 398

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK-VWKYMKLKR 404
           L       +  +   + +RM K  C  D+DTY +++ ++    + EK  + VW  M+   
Sbjct: 399 LKTT---EKPKDVISLMQRMEKSGCRLDSDTYNLILNLYV-SWDYEKGVQLVWDEMERNG 454

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             P   +F+++++GL   G + ++      M  +G+ P   T     KLL+K  R
Sbjct: 455 SGPDQRSFTIMVHGLHSHGKLDEALHYYRTMESRGMTPEPRT-----KLLVKAIR 504



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 5/236 (2%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVK--SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
            Y  M+D+L +  +V     +     M+S     T+ +++VL++ Y   +++++A+D F 
Sbjct: 148 AYTEMLDILGRMKKVRLMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFY 207

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           + +  G   D+  +  L+ + C+    +    +      +   P  ++ NIILNG   +G
Sbjct: 208 KRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNIILNGWCVKG 266

Query: 355 ETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
              +A RV+  +I    + D  TY   I    + G+L  A K++  M  K   P +   +
Sbjct: 267 SLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICN 326

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +I+ LC K  + ++  +  +M ++G +    T+  L K   K  R E V + L +
Sbjct: 327 CIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDD 382


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 211/398 (53%), Gaps = 6/398 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ----NYEHSVRAYHSMIE 105
           L+ AL      +S  +V  VL++F++A   +  FF+WA         + H+   Y  M+ 
Sbjct: 170 LEAALTALSPPLSETLVLAVLDRFKHAHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVH 229

Query: 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
            L K RQ+Q M  L+  M  +  L ++ F I ++ +A   +++ AV  F +M+ +G    
Sbjct: 230 ILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDG 289

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           + +FN LL AL +    R+A ++FD M+DR+ PD ++Y+ L+  W    NL  A  ++ E
Sbjct: 290 VESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNE 349

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M++ G  PD+V +  M++ L +  R  EA+ + + M +    P  + Y++L+  +    +
Sbjct: 350 MLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGK 409

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           ++ A+  F EM+  G   DVA Y  L+  +  A +   V  +L++M  KG  P+ RT N 
Sbjct: 410 MDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNA 469

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE-LEKAFKVWKYMKLK 403
           ++  L  R   D+A R++++MIK   E    TY MM+K +  GG        VW+ M  K
Sbjct: 470 LIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRK 529

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              P +++++V ING    G   ++C  +E+MI+KG++
Sbjct: 530 GICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMK 567



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 2/235 (0%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            + I +     AG +  A+G+ + M +         ++ L+     E    +A   F  M
Sbjct: 257 AFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM 316

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            ++    D+  Y AL+ A+C A       RV  +M   G+ P+    N ++ GL+     
Sbjct: 317 -RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 375

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA ++F  M  K    +  TYTM+I+  C+ G+++ A + ++ M+     P + T++ L
Sbjct: 376 PEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCL 435

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + G  +   +     LLE+M +KG  P G T+  L KLL      D    + +KM
Sbjct: 436 LVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKM 490



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 1/209 (0%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           T+  Y  +VH  G   + +  V    EM K G L   A +   I +F  A + KN   V 
Sbjct: 220 TTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDA-FKIAIKSFAAAGEIKNAVGVF 278

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388
           + M + G      + N +L  L   G   EA +VF RM      D  +YT ++  +C   
Sbjct: 279 EMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNAR 338

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            L +A +VW  M      P +   + +I GL       ++  + E M  KG  P+  T+ 
Sbjct: 339 NLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYT 398

Query: 449 KLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            L +   K G+ D+     E+M  +  +P
Sbjct: 399 MLIRDHCKRGKMDMAMRCFEEMQDVGCQP 427


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 232/455 (50%), Gaps = 15/455 (3%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK 85
           EP     D    I K   SS   V+  AL++SGI  + E+V  +L +F +   +AF  F 
Sbjct: 52  EPQVSNADKLSEILKKRYSSEAAVV-KALNESGIDATNELVSQILMRFDSHCVVAFGVFI 110

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARV 144
           WA+ Q +Y H+   Y  MI+ L K +++ +MW LV  M+     +++ T   +MR+ A+ 
Sbjct: 111 WAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVEQMKGLNGYVSLATASKVMRRLAKA 170

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204
           +K ++A+  F  ++KYG +++  A N L+ AL K  +V  A   F   KD    DS +++
Sbjct: 171 RKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFN 230

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           IL+ G+ K      AR+I  EM   G +PD+V+Y   +   C+         +   M   
Sbjct: 231 ILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEK 290

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C+P    Y+ ++H  G   ++ +A++ + +M++NG L D   Y++LI    ++ + K+ 
Sbjct: 291 GCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDA 350

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKM 383
           + V +DM  +GV  N    N +++      +   A ++  RM    C+ D  TY  ++KM
Sbjct: 351 WDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKM 410

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPS----MHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
            C+     K+ K+ K++    F  +    + T+++L+N  C  G +  +C   ++ + KG
Sbjct: 411 CCR----RKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKG 466

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474
           + P  +TF    K L++E  +  +K ++EK+  L+
Sbjct: 467 MVPMVKTF----KALVEELEQKNMKEMKEKIEKLM 497


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 234/461 (50%), Gaps = 18/461 (3%)

Query: 27  PSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFF 84
           PS +    A  ISKI+L   +P   ++++L  +GI +S  +V   L + RN   +A  FF
Sbjct: 45  PSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIALSFF 104

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYAR 143
            WA+ Q ++ H V +Y+ +I+ LAK+RQ+ + W  +  M    +     TF I++R+   
Sbjct: 105 LWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRILIRRSVS 164

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAA--FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
                +AV  F+ M  + V ++  +  F  LL  L K   V+ A +IF+  K +F  ++K
Sbjct: 165 AGLTRQAVRAFDDMSCF-VEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAK 223

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR----------V 251
            Y+IL+ GW K   +  A  +  EMV+ G   ++VTY ++++ +C+             +
Sbjct: 224 MYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDRFERTI 283

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A  ++  M      P    YS+++H Y   ++ E  +D    M+  GI   VA Y ++
Sbjct: 284 RDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSV 343

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--L 369
           +   C   + ++   ++ DM   GV+P++ T N       GR ++D A R++R+M +   
Sbjct: 344 VKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYS 403

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
           C  D  TY +++ MF +   +E   ++W  MK     P + ++++LI+GLC+K    ++C
Sbjct: 404 CLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEAC 463

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
               +MIEKG  P   TF  L + LI+       + L++K+
Sbjct: 464 HFFVEMIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKL 504



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 106/225 (47%), Gaps = 3/225 (1%)

Query: 119 LVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           +++ MR K +  +V ++ I++  Y+R  K E  +    +M+  G+   +A +  ++  LC
Sbjct: 289 VLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLC 348

Query: 178 KSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNPDI 235
               +  A+E+  D +KD   P + TY+   + +    +   A  ++R+M +   C PD+
Sbjct: 349 SCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDM 408

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY I+V +  K  R++    I   M ++   P    Y++L+H    + + ++A   F+E
Sbjct: 409 HTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVE 468

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
           M + G L     +  L     +++  K   R+ K +  + +   S
Sbjct: 469 MIEKGYLPQKITFETLYRGLIQSDMLKTWRRLKKKLEEESITFGS 513


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 225/410 (54%), Gaps = 14/410 (3%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           ++P+  ++ ALD  G+ ++ ++V ++L K      +AF FF WA  Q  Y H  RAY+ M
Sbjct: 220 ANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEM 279

Query: 104 IESLA----KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           I+ L+    K++Q++I+ D+++ M+   K+ + VE   +I+RKY   +K    ++ F   
Sbjct: 280 IDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKK 337

Query: 158 QKYGV-TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +K  V TQ  + A N LL ALCK   V  AQ +F  +K++  PD+ TY+IL  GW +  N
Sbjct: 338 KKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRN 397

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFI 272
             R   +  EM++ G  PD  TY   +D  CKAG V EA  + + M    ST+  PT+  
Sbjct: 398 PSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKT 457

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++++      +R E+      +M  +G+L DV+ Y  +I   C A K +  Y+ L++M 
Sbjct: 458 YAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMG 517

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +KG  P+  T N  L+ L    +++EA  ++ RMI+  C     T+ M+I MF + GE +
Sbjct: 518 NKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 577

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            AF+ W  M  +       T+ V+I GL +   + D+C LL+++I KGI+
Sbjct: 578 GAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKGIK 627



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 131/320 (40%), Gaps = 38/320 (11%)

Query: 65  IVEDVLEKFR--------NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           +VED    FR        +A T    FF W  + +N    +R    MIE       +   
Sbjct: 363 LVEDAQAMFRRVKNKVKPDANTYNILFFGWC-RVRNPSRGMRVLEEMIEMGHTPDSF--- 418

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLL 173
                           T+   +  + +   V EA   F  M+  G T +      +  ++
Sbjct: 419 ----------------TYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMI 462

Query: 174 SALCKSKNVRKAQEIFDCMKDRF----IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            AL +S    + +E F  +KD      +PD  TY  ++EG      +  A +   EM + 
Sbjct: 463 LALVQSD---RTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNK 519

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIVTY   +DVLC+  + +EALG+   M    C P+   +++L+  +      + A
Sbjct: 520 GYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGA 579

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +T+ EM+K G   D   Y  +I      NK ++   +L ++ +KG+    R  +  L  
Sbjct: 580 FETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKGIKLPYRKFDCFLMQ 639

Query: 350 LIGRGETDEAYRVFRRMIKL 369
           L   G+    +++   M K 
Sbjct: 640 LSMIGDLQAIHKLSEHMRKF 659


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 212/404 (52%), Gaps = 11/404 (2%)

Query: 51  DTALDQSGIRVSPEIVEDV----LEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           DT L ++  R + E+ EDV    L+K R+   +A  FF WA     Y H  R Y  M++ 
Sbjct: 96  DTDLGKALHRFAGEMDEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRTYTEMLDI 155

Query: 107 LAKIRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           L ++++ ++M  L + +  +R   ++   TF +++ +YA   KV+EA+  F   + YG  
Sbjct: 156 LGRMKKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFE 215

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
            +L  F  LL +LC+ K+V +A+ +F   KD F P  K+++I+L GW    +LP A+ I+
Sbjct: 216 VDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRIW 275

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            +++ +   PD+ TYG  ++ L KAG++  A+ +  SM      P   I + ++     +
Sbjct: 276 NQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFK 335

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            +I +A+D F EM   G  ADVA YN LI  FCK  + + VY +L DM +KG +PN+ T 
Sbjct: 336 KKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTY 395

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           + IL       +  +   + +RM K  C  D+DTY +++ ++          +VW  M+ 
Sbjct: 396 SYILKTT---EKPKDVIHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQVWDEMER 452

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
               P   +F+++++GL  +G +  +      M  +G+ P   T
Sbjct: 453 NGSGPDQRSFTIMVHGLHSQGRLDQALQYYTTMKSRGMTPEPRT 496



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 42/304 (13%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
            +  +L  L + K V+   ++FD + +     +  ++T+++LL  +     +  A E+F 
Sbjct: 148 TYTEMLDILGRMKKVKLMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFY 207

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           +  D G   D+V + I++  LC+   V+EA  +          P    ++++++ + V+ 
Sbjct: 208 KRKDYGFEVDLVGFQILLMSLCRYKHVEEAEALFLQKKDEF-PPVIKSWNIILNGWCVKG 266

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            + DA   + ++  + +  D+  Y   I +  KA K     ++   M  KG+ P+   CN
Sbjct: 267 SLPDAKRIWNQIIASKLKPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICN 326

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            I++ L  + +  EA  +FR M  + C+AD  TY  +IK FC+    EK ++        
Sbjct: 327 CIIDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYE-------- 378

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
                                      LL+DM  KG  P+  T+  + K    E  +DV+
Sbjct: 379 ---------------------------LLDDMENKGCSPNNMTYSYILK--TTEKPKDVI 409

Query: 464 KFLQ 467
             LQ
Sbjct: 410 HLLQ 413



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 97/205 (47%), Gaps = 3/205 (1%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           T+  ++VL++ Y   +++++A++ F + +  G   D+  +  L+ + C+    +    + 
Sbjct: 182 TNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFEVDLVGFQILLMSLCRYKHVEEAEALF 241

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
                +   P  ++ NIILNG   +G   +A R++ ++I    + D  TY   I    + 
Sbjct: 242 LQKKDE-FPPVIKSWNIILNGWCVKGSLPDAKRIWNQIIASKLKPDLFTYGTFINSLTKA 300

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+L  A K++  M  K   P +   + +I+ LC K  + ++  +  +M ++G +    T+
Sbjct: 301 GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFREMTDRGCQADVATY 360

Query: 448 GKLRKLLIKEGR-EDVLKFLQEKMN 471
             L K   K  R E V + L +  N
Sbjct: 361 NTLIKYFCKIRRTEKVYELLDDMEN 385


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 225/410 (54%), Gaps = 14/410 (3%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           ++P+  ++ ALD  G+ ++ ++V ++L K      +AF FF WA  Q  Y H  RAY+ M
Sbjct: 247 ANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEM 306

Query: 104 IESLA----KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           I+ L+    K++Q++I+ D+++ M+   K+ + VE   +I+RKY   +K    ++ F   
Sbjct: 307 IDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKK 364

Query: 158 QKYGV-TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +K  V TQ  + A N LL ALCK   V  AQ +F  +K++  PD+ TY+IL  GW +  N
Sbjct: 365 KKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRN 424

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFI 272
             R   +  EM++ G  PD  TY   +D  CKAG V EA  + + M    ST+  PT+  
Sbjct: 425 PSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKT 484

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++++      +R E+      +M  +G+L DV+ Y  +I   C A K +  Y+ L++M 
Sbjct: 485 YAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMG 544

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +KG  P+  T N  L+ L    +++EA  ++ RMI+  C     T+ M+I MF + GE +
Sbjct: 545 NKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 604

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            AF+ W  M  +       T+ V+I GL +   + D+C LL++++ KGI+
Sbjct: 605 GAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIK 654



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 131/320 (40%), Gaps = 38/320 (11%)

Query: 65  IVEDVLEKFR--------NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           +VED    FR        +A T    FF W  + +N    +R    MIE       +   
Sbjct: 390 LVEDAQAMFRRVKNKVKPDANTYNILFFGWC-RVRNPSRGMRVLEEMIEMGHTPDSF--- 445

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLL 173
                           T+   +  + +   V EA   F  M+  G T +      +  ++
Sbjct: 446 ----------------TYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMI 489

Query: 174 SALCKSKNVRKAQEIFDCMKDRF----IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            AL +S    + +E F  +KD      +PD  TY  ++EG      +  A +   EM + 
Sbjct: 490 LALVQSD---RTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNK 546

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIVTY   +DVLC+  + +EALG+   M    C P+   +++L+  +      + A
Sbjct: 547 GYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGA 606

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +T+ EM+K G   D   Y  +I      NK ++   +L ++ +KG+    R  +  L  
Sbjct: 607 FETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFLMQ 666

Query: 350 LIGRGETDEAYRVFRRMIKL 369
           L   G+    +++   M K 
Sbjct: 667 LSMIGDLQAIHKLSEHMRKF 686


>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa]
 gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 226/445 (50%), Gaps = 8/445 (1%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA 80
           ++ SS  S +   +A+ + +I+       +++AL  +GI  + +IV +VL+      T A
Sbjct: 16  QFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLKLCHENATSA 75

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
             FF+WA +   ++ +  A++ M++ L K   Y+ MWD V  M+ + ML++ TF  +   
Sbjct: 76  IAFFRWAGR--THKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSMATFVSVFGS 133

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPD 199
           Y    K  EA+ +F VM KYGV Q++   N LL+A+C  +N   KA E FD +K +  P+
Sbjct: 134 YCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKIKLKIPPN 193

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNPD-IVTYGIMVDVLCKAGRVDEALGI 257
           + T++ILLEGW K+ ++ +A+  F EMV   G +P+ +  Y   +  L +  + DEA+  
Sbjct: 194 ADTFAILLEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQADEAVKF 253

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M    C P    +S  +     +N    A+  +  M  +G+L ++ MYNA+IG  C 
Sbjct: 254 LRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGSGLLPNLIMYNAMIGLHCN 313

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
            N   N +R+L +M   G  P+  T NII   LI   +     + F  MIK  E+    +
Sbjct: 314 NNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIK-NESPPTHF 372

Query: 378 --TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
             +  I     GG+ E A ++W Y+     +P   + + L+ G C+ G +S      EDM
Sbjct: 373 DCSAAIMTLIDGGDPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRMSQVRRFAEDM 432

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRE 460
           +++ I     T  KL+    K GR 
Sbjct: 433 LDRRINIYESTMKKLKDSFDKTGRH 457


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 218/415 (52%), Gaps = 14/415 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L   L+Q    +  ++V  VL+K R+   +A  FFKWA     Y H  RAY  M++ L +
Sbjct: 99  LAEVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGR 158

Query: 110 IRQYQIMWDLVNAMRTKRMLNVET---FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           +++ ++M  L + +  +   +V T   F +++ +YA   KV+EA+  F   + YG   +L
Sbjct: 159 MKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDL 218

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
             F  LL +LC+ K+V +A+ +F   KD F P  K+++I+L GW    +L  A+ ++ E+
Sbjct: 219 VGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEI 278

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           + +   PD+ TYG  ++ L K+G++  A+ +  SM      P   I + ++     + RI
Sbjct: 279 IASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRI 338

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            +A++ F EM   G  ADVA YN LI  FCK N+ + VY +L DM  KGV+PN+ T + I
Sbjct: 339 PEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYI 398

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK-VWKYMKLKR 404
           L       +  +   + +RM K  C  D+DTY +++ ++    + EK  + VW  M+   
Sbjct: 399 LKTT---EKPKDVISLMQRMEKSGCRLDSDTYNLILNLYV-SWDYEKGVQLVWDEMERNG 454

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             P   +F+++++GL     + ++      M  +G+ P   T     KLL+K  R
Sbjct: 455 SGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRT-----KLLVKAIR 504



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 15/241 (6%)

Query: 237 TYGIMVDVLCKAGRV-------DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
            Y  M+D+L +  +V       DE    V+S  S V   T+ +++VL++ Y   +++++A
Sbjct: 148 AYTEMLDILGRMKKVRLMRQLFDEI--PVESRQSVV---TNRMFAVLLNRYAGAHKVQEA 202

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +D F + +  G   D+  +  L+ + C+    +    +      +   P  ++ NIILNG
Sbjct: 203 IDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNIILNG 261

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              +G   +A RV+  +I    + D  TY   I    + G+L  A K++  M  K   P 
Sbjct: 262 WCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPD 321

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
           +   + +I+ LC K  + ++  +  +M ++G +    T+  L K   K  R E V + L 
Sbjct: 322 VAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLD 381

Query: 468 E 468
           +
Sbjct: 382 D 382


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 221/433 (51%), Gaps = 5/433 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL      +   +V  VL +F++A   ++ FF+WA     + H+   Y  M+  L K
Sbjct: 183 LEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLHILGK 242

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ+++M  ++  M     L+++ F + ++ +A   +++ AV  F +M+K G    + +F
Sbjct: 243 TRQFEMMVAIIQEMGKVGALSMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVESF 302

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL AL      R+A+++FD M  ++ PD ++Y+ L+  W    NL  A  ++ EM++ 
Sbjct: 303 NCLLVALANEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEK 362

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PD+V +  M++ L +  R  EAL + + M +    P  + Y++L+  +    +++ A
Sbjct: 363 GMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMA 422

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ F EM++     DVA Y  L+  +  A +   V  VL++M  KG  P++RT N ++  
Sbjct: 423 MECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKL 482

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIP 407
           L  R   D+A R++++MIK   E    TY MM+K +  G         VW+ M  +   P
Sbjct: 483 LTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICP 542

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
            +++++V ING    G   ++   +E+MI KG+      + K      K G+ D+L  L 
Sbjct: 543 DVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSKAGKPDILYELA 602

Query: 468 EKMNLLVKEPLCD 480
            K+    K   CD
Sbjct: 603 LKVKFAGK---CD 612


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 218/415 (52%), Gaps = 14/415 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L   L+Q    +  ++V  VL+K R+   +A  FFKWA     Y H  RAY  M++ L +
Sbjct: 79  LAEVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGR 138

Query: 110 IRQYQIMWDLVNAMRTKRMLNVET---FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           +++ ++M  L + +  +   +V T   F +++ +YA   KV+EA+  F   + YG   +L
Sbjct: 139 MKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDL 198

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
             F  LL +LC+ K+V +A+ +F   KD F P  K+++I+L GW    +L  A+ ++ E+
Sbjct: 199 VGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEI 258

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           + +   PD+ TYG  ++ L K+G++  A+ +  SM      P   I + ++     + RI
Sbjct: 259 IASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRI 318

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            +A++ F EM   G  ADVA YN LI  FCK N+ + VY +L DM  KGV+PN+ T + I
Sbjct: 319 PEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYI 378

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK-VWKYMKLKR 404
           L       +  +   + +RM K  C  D+DTY +++ ++    + EK  + VW  M+   
Sbjct: 379 LKTT---EKPKDVISLMQRMEKSGCRLDSDTYNLILNLYV-SWDYEKGVQLVWDEMERNG 434

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             P   +F+++++GL     + ++      M  +G+ P   T     KLL+K  R
Sbjct: 435 SGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRT-----KLLVKAIR 484



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 15/241 (6%)

Query: 237 TYGIMVDVLCKAGRV-------DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
            Y  M+D+L +  +V       DE    V+S  S V   T+ +++VL++ Y   +++++A
Sbjct: 128 AYTEMLDILGRMKKVRLMRQLFDEI--PVESRQSVV---TNRMFAVLLNRYAGAHKVQEA 182

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +D F + +  G   D+  +  L+ + C+    +    +      +   P  ++ NIILNG
Sbjct: 183 IDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDE-FPPVIKSWNIILNG 241

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              +G   +A RV+  +I    + D  TY   I    + G+L  A K++  M  K   P 
Sbjct: 242 WCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPD 301

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
           +   + +I+ LC K  + ++  +  +M ++G +    T+  L K   K  R E V + L 
Sbjct: 302 VAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLD 361

Query: 468 E 468
           +
Sbjct: 362 D 362


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 218/426 (51%), Gaps = 8/426 (1%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK 85
           +P  E     +++ K    S    ++ AL Q  + ++ ++V DVL++ R+    A+ FF 
Sbjct: 81  DPDGETALEVQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFN 140

Query: 86  WAEK---QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKY 141
           WA +   +  Y      ++ +++ L ++R++  M  L + M + K + N  TF +++ +Y
Sbjct: 141 WASRCGXESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRY 200

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
           A   K EEAV  F   +  G   +L AF  LL +LC+ K+V  A+ +F   K+ F PD K
Sbjct: 201 AAAHKTEEAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPDIK 260

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           + +++L GW    +L  A+  + +++ + C PD  TYGI ++ L KAG++  A+ + ++M
Sbjct: 261 SMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAM 320

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C P   I + ++     + RI +A++   EM +     DVA YN+LI   CK  +F
Sbjct: 321 WEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRF 380

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMM 380
           + VY +L DM  KG  PN+RT   +L       + +E   +  RM +  C  ++D Y ++
Sbjct: 381 EKVYELLDDMEQKGCLPNARTYGYLLKST---KKPEEVPGILERMERNGCRMNSDCYNLI 437

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +K++   G   K       M+     P   T++++I+GL DKG + D+    + M   G+
Sbjct: 438 LKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 497

Query: 441 RPSGET 446
            P   T
Sbjct: 498 VPEPRT 503



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 3/243 (1%)

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           ++G +P    +  ++D+L +  R  E   +   M           + VL++ Y   ++ E
Sbjct: 148 ESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTE 207

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +AV  F + +  G   D+  +  L+ + C+  K   +   L         P+ ++ N+IL
Sbjct: 208 EAVKIFYKRKGLGFELDLIAFQTLLMSLCRY-KHVEMAEFLFHSKKNEFPPDIKSMNVIL 266

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           NG    G   EA R +  +I   C+ D  TY + I    + G+L  A K+++ M  K   
Sbjct: 267 NGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCN 326

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKF 465
           P +   + +I+ LC K  + ++  +L +M E+  +P   T+  L K L K  R E V + 
Sbjct: 327 PDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYEL 386

Query: 466 LQE 468
           L +
Sbjct: 387 LDD 389



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 38/294 (12%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G +      N +L  L + +   +  ++FD M K + + + +T+ +LL  +        A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEA 209

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            +IF +    G   D++ +  ++  LC+   V+ A  +  S  +    P     +V+++ 
Sbjct: 210 VKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFP-PDIKSMNVILNG 268

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           + V   + +A   + ++  +    D   Y   I +  KA K     ++ + M  KG  P+
Sbjct: 269 WCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPD 328

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
              CN I++ L  +    EA  V R M +  C+ D  TY  +IK  C+    EK ++   
Sbjct: 329 VAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYE--- 385

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
                                           LL+DM +KG  P+  T+G L K
Sbjct: 386 --------------------------------LLDDMEQKGCLPNARTYGYLLK 407


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 221/433 (51%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ AL Q GI +S  +V   L + R    +A  FF WA  Q++Y H   AY+ M++ L+ 
Sbjct: 10  MENALGQLGIPLSTPLVTGGLHRLRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSS 69

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
              K++Q++I+ D++  M+   + M+  E   +I+RKY   +K    +  F   ++  V 
Sbjct: 70  TRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKYT--EKYLTHMQKFAKKKRIRVK 127

Query: 164 QNLA--AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
             L   AFN LL ALCK   V  A+ ++  M+    P+++TY+IL+ GW +  N  R  +
Sbjct: 128 TQLEINAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVRNPTRGMK 187

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM++ G  PD  TY   +D  CK G + EA+ + + M    ST+  PT+  Y++++ 
Sbjct: 188 LLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIV 247

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                +R+ED       M  +G L DV  Y  +I   C   K    Y+ L++M +K   P
Sbjct: 248 ALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRP 307

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L    ++++A +++ RMI+L C     TY M+I MF +  + + AF+ W
Sbjct: 308 DIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETW 367

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           + +  +   P   T+ V+I GL +   + D+C LLE++I +G++   + F      L   
Sbjct: 368 QEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSFLMQLSVI 427

Query: 458 GREDVLKFLQEKM 470
           G    +  L E M
Sbjct: 428 GDLQAIHRLSEHM 440



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 147/313 (46%), Gaps = 11/313 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           + A++ ++++L K    +    L   MR     N ET+ I++  + RV+     +     
Sbjct: 132 INAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVRNPTRGMKLLEE 191

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGK 212
           M + G   +   +N  +   CK+  + +A ++F+ M+ +      P +KTY+I++    +
Sbjct: 192 MIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIVALAQ 251

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +    ++   M+ +GC PD+ TY  +++ +C  G++DEA   ++ M +   RP    
Sbjct: 252 HDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYRPDIVT 311

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+  +       + EDA+  +  M +   +  V  YN LI  F + +     +   ++++
Sbjct: 312 YNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDPDGAFETWQEID 371

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEA----YRVFRRMIKLCEADADTYTMMIKMFCQGG 388
           ++G  P++ T  +++ GL    + ++A      V    +KL     D++ M + +    G
Sbjct: 372 NRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSFLMQLSVI---G 428

Query: 389 ELEKAFKVWKYMK 401
           +L+   ++ ++MK
Sbjct: 429 DLQAIHRLSEHMK 441


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 218/433 (50%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ ALDQ G+ ++ ++V D+L + R    LAF FF WA +Q+NY H  R Y+ MI+ L+ 
Sbjct: 103 MEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSS 162

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
              K++Q++I+ DL++ M+   K  + VE    I+R Y    K    +  F   +K  V 
Sbjct: 163 TRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYT--DKYLTCLQKFAKKKKVIVK 220

Query: 164 QN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           +   + AFN LL ALCK   V  A+ +   +K +  PD+ TY+I+  GW +  N  R   
Sbjct: 221 RQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPGRGMR 280

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM++ G +PD  TY   +   CKAG + EA  + + M    S +  PT+  Y++++ 
Sbjct: 281 VLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIV 340

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 R+E+       M K+G L DV+ Y  +I   C A K +  Y  L++M  KG  P
Sbjct: 341 ALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKKGYPP 400

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L     +D+A R   RMI++ C     TY M+I MF +  +   AF++W
Sbjct: 401 DIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGAFQIW 460

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M        + ++ ++I GL     V D+C+LLE+++ KG++     F      L   
Sbjct: 461 LEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLPFRKFDSFLMQLSVN 520

Query: 458 GREDVLKFLQEKM 470
           G    +  L E M
Sbjct: 521 GNLKGIHRLSEHM 533



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 132/330 (40%), Gaps = 42/330 (12%)

Query: 82  CFFKWAEKQQ---NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           C  K+A+K++     +  + A++ ++++L K    +    L+  ++ K   +  T+ I+ 
Sbjct: 207 CLQKFAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMF 266

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
             + RV+     +     M + G   +   +N  +++ CK+  +++A E+F+ M+ +   
Sbjct: 267 FGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSA 326

Query: 196 ------------------------------------FIPDSKTYSILLEGWGKDPNLPRA 219
                                                +PD  TY  ++EG      +  A
Sbjct: 327 LSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEA 386

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
                EM   G  PDIVTY   + VLC     D+AL     M    C P+   Y++L+  
Sbjct: 387 YMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISM 446

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           +   N    A   +LEM++ G   DV  Y  +I      NK  +   +L+++ +KG+   
Sbjct: 447 FFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLP 506

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            R  +  L  L   G     +R+   M K 
Sbjct: 507 FRKFDSFLMQLSVNGNLKGIHRLSEHMRKF 536


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 211/406 (51%), Gaps = 15/406 (3%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           +  ++V  VL+K R+   +A  FF WA     YEH  R Y  M++ L ++++ ++M  L 
Sbjct: 110 IDEDVVLKVLQKQRSNWQVALLFFTWAAGLPTYEHGPRTYIEMLDILGRMKKVRLMRQLF 169

Query: 121 NAMRTKRMLNVET---FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           + +  +R   V T   F +++ +YA   KV+EA+  F     YG   +L  F  LL +LC
Sbjct: 170 DEIPEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLC 229

Query: 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           + K+V +A+ +F   KD F P  K+++I+L GW    +LP A+ ++ E++ +   PD+ T
Sbjct: 230 RYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFT 289

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           YG  ++ L KAG++  A+ +  SM      P   I + ++     + +I +A+  F EM 
Sbjct: 290 YGTFINALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMN 349

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G  ADVA YN LI  FCK  + + VY +L DM  KG +PN+ T   IL       +T 
Sbjct: 350 DRGCQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYIL-------KTT 402

Query: 358 EAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           E  R    +I+      C+ D+DTY +++ ++      +   +VW+ M+     P   +F
Sbjct: 403 EKPRDVMNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKGVQQVWEEMERNGSGPDQRSF 462

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +++++GL  +G +  +      M  +G+ P   T   ++ + IK+G
Sbjct: 463 TIMVHGLHSQGQLDQALQYYTTMKSRGMTPEPRTRILVKAIHIKKG 508



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 3/202 (1%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           T+ +++VL++ Y   +++++A++ F +    G   D+  +  L+ + C+    +    + 
Sbjct: 182 TNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEEAEALF 241

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
                +   P  ++ NIILNG   +G   +A RV+  +I    + D  TY   I    + 
Sbjct: 242 LQKKDE-FPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFINALTKA 300

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+L  A K++  M  K   P +   + +I+ LC K  + ++  +  +M ++G +    T+
Sbjct: 301 GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATY 360

Query: 448 GKLRKLLIKEGR-EDVLKFLQE 468
             L K   K  R E V + L +
Sbjct: 361 NTLIKHFCKIRRTEKVYELLDD 382



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 2/127 (1%)

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVF-RRMIKLCEADADTYTMMIKMFCQGGELEK 392
           +G+   +R   ++LN   G  +  EA  +F +R     E D   + +++   C+   +E+
Sbjct: 177 RGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYKHVEE 236

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++   K   F P + ++++++NG C KG + D+  +  ++I   ++P   T+G    
Sbjct: 237 AEALF-LQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIASKLKPDLFTYGTFIN 295

Query: 453 LLIKEGR 459
            L K G+
Sbjct: 296 ALTKAGK 302


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/433 (29%), Positives = 225/433 (51%), Gaps = 17/433 (3%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           ++E L   KS S     +    L  AL +  + +  +I+  VL+K R+   +A  FF WA
Sbjct: 88  ASEVLKVLKSTS-----ADNADLSDALRRFAVHMDEDIILTVLQKQRSNWQVALAFFNWA 142

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET---FCIIMRKYARV 144
                Y H  RAY  M++ L ++++ + M  L + +  +R + V T   F +++ +YA  
Sbjct: 143 ATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNRYAGA 202

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204
            KV+EA+  F + + YG   +L  F  LL +LC+ K+V +A+ +F   KD F   +K+++
Sbjct: 203 HKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWN 262

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+L GW    +L  A+ I+ +++ +    D+ TYG  ++ L K GR+  A+ + K M  T
Sbjct: 263 IILNGWCVKGSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGRISAAVKLFKKMWET 322

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P   I + ++     +NRI +A++ F EM      ADVA YN LI   CK  + + V
Sbjct: 323 GINPDVAICNCIIDQLCFKNRIPEALEIFGEMNDRLCQADVATYNTLIKYLCKKKRMEKV 382

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           Y +L DM +KG +PN+RT + +L       +  +   + +RM +  CE D+DTY +++ +
Sbjct: 383 YELLDDMEAKGCSPNNRTYSYVLKTT---EKPKDVIALMQRMEQTGCELDSDTYNLILNL 439

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +      +   +VW  M+     P   +F+++++GL  +G + ++      M  +G+ P 
Sbjct: 440 YTNWKYEKGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPE 499

Query: 444 GETFGKLRKLLIK 456
             T     K+L+K
Sbjct: 500 PRT-----KILVK 507



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 345 IILNGLIGRGETDEAYRVFR-RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           ++LN   G  +  EA  VF  R     E D   + +++   C+   +E+A  +++  K  
Sbjct: 194 VLLNRYAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKK-D 252

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            F     ++++++NG C KG + D+  +  D+I   +     T+G     L K GR
Sbjct: 253 EFPHVTKSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGR 308


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 225/452 (49%), Gaps = 21/452 (4%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIM--LSSPKVVLDTALDQSGIRVSP 63
           H ++ + S   S   R+     S +     K+I  IM  + S        L+   + +S 
Sbjct: 7   HQKSHVCSPVPSLQLRFRDDRLSQDV----KTILDIMHEMGSGPSQTKQKLEHCSVDLSA 62

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
           ++V +VL + RN    AF FF WA KQ  Y HS+R YHSMI  L K+R++   W+L+  M
Sbjct: 63  KLVVEVLLRTRNDWEAAFTFFLWAGKQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEM 122

Query: 124 RTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           R  R    ++  +T  I++RKY  V  V  A+ TF   +++     L  F+ LLSALC+ 
Sbjct: 123 RRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRY 182

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL----PRAREIFREMVDTGCNPDI 235
           KNV+ A+ +  C K+ F  D+K+++I+L GW    NL      A  I+ EM       D+
Sbjct: 183 KNVQDAEHLLFCNKNLFPLDTKSFNIILNGWC---NLIVSTSHAERIWHEMSKRRIQHDV 239

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           V+YG ++    K+ ++ + L +   M      P   +Y+ +++       +++AV+    
Sbjct: 240 VSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGT 299

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           +E N +  +V  YN+LI   CKA K     ++  ++  + ++P  +T +     L  +  
Sbjct: 300 LEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTK-- 357

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            +E + +  +M +L C    +TY M+++ FC+  +L+  FK+W  M+         ++ V
Sbjct: 358 -EEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIV 416

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           LI+GL   G + ++     +M EKG  P  +T
Sbjct: 417 LIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKT 448



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 120/280 (42%), Gaps = 49/280 (17%)

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-----DSTVCRPTSFIYSVLVHTYGVEN 284
           G    I  Y  M+ +L K  + D A  +++ M       ++  P + +  +++  Y   +
Sbjct: 91  GYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLL--IMIRKYCAVH 148

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP-NSRTC 343
            +  A++TF   ++      +  +++L+ A C+    ++   +L    +K + P ++++ 
Sbjct: 149 DVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLL--FCNKNLFPLDTKSF 206

Query: 344 NIILNGLIGR-GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           NIILNG       T  A R++  M K   + D  +Y  +I  + +  +L K  +++  MK
Sbjct: 207 NIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMK 266

Query: 402 LKRFIP-----------------------------------SMHTFSVLINGLCDKGIVS 426
            ++  P                                   ++ T++ LI  LC  G V 
Sbjct: 267 KRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVD 326

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           ++  L  +++++ + P+ +TF    ++L    +E+V + L
Sbjct: 327 EAKQLFYEILKRHLSPTIQTFHAFFRIL--RTKEEVFELL 364


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 218/433 (50%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ ALDQ G+ ++ ++V D+L + R    LAF FF WA +Q+NY H  R Y+ MI+ L+ 
Sbjct: 103 MEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQENYSHEPRVYNEMIDILSS 162

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
              K++Q++I+ DL++ M+   K  + VE    I+R Y    K    +  F   +K  V 
Sbjct: 163 TRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYT--DKYLTCLQKFAKKKKVIVK 220

Query: 164 QN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           +   + AFN LL ALCK   V  A+ +   +K +  PD+ TY+I+  GW +  N  R   
Sbjct: 221 RQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVRNPGRGMR 280

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM++ G +PD  TY   +   CKAG + EA  + + M    S +  PT+  Y++++ 
Sbjct: 281 VLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIV 340

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 R+E+       M K+G L DV+ Y  +I   C A K +  Y  L++M  KG  P
Sbjct: 341 ALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKKGYPP 400

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L     +D+A R   RMI++ C     TY M+I MF +  +   AF++W
Sbjct: 401 DIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGAFQIW 460

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M        + ++ ++I GL     V D+C+LLE+++ KG++     F      L   
Sbjct: 461 LEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLPFRKFDSFLMQLSVN 520

Query: 458 GREDVLKFLQEKM 470
           G    +  L E M
Sbjct: 521 GNLKGIHRLSEHM 533



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 152/331 (45%), Gaps = 14/331 (4%)

Query: 82  CFFKWAEKQQ---NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           C  K+A+K++     +  + A++ ++++L K    +    L+  ++ K   +  T+ I+ 
Sbjct: 207 CLQKFAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMX 266

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
             + RV+     +     M + G   +   +N  +++ CK+  +++A E+F+ M+ +   
Sbjct: 267 FGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSA 326

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
              P +KTY+I++     +  +    +    M+ +GC PD+ TY  M++ +C AG+V EA
Sbjct: 327 LSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEA 386

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
              ++ M      P    Y+  +         +DA+     M + G L  V  YN LI  
Sbjct: 387 YMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISM 446

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA----YRVFRRMIKLC 370
           F + N     +++  +M+  G   +  +  I++ GL G  +  +A      V  + +KL 
Sbjct: 447 FFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLP 506

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
               D++ M + +    G L+   ++ ++M+
Sbjct: 507 FRKFDSFLMQLSV---NGNLKGIHRLSEHMR 534


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 224/433 (51%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ ALD+S + ++  +V  +L++ +     AF FF WA  Q++Y H   AY+ MI+ L+ 
Sbjct: 112 MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 171

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV- 162
              K +Q++I+ D+++ M+   K ++ V+    I+RKY   ++    V  F   ++  V 
Sbjct: 172 TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYC--ERYLTHVQKFAKRKRIRVK 229

Query: 163 TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           TQ  + AFN LL ALCK   V++ + +   M+ R  PD+ T+++L  GW +  +  +A +
Sbjct: 230 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMK 289

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM++ G  P+  TY   +D  C+AG VDEA  +   M    S V  PT+  +++++ 
Sbjct: 290 LLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIV 349

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                ++ E+  +    M   G L DV+ Y  +I   C A K    Y+ L +M++KG  P
Sbjct: 350 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPP 409

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L    +TDEA +++ RM++  C     TY M+I MF +  + + AF  W
Sbjct: 410 DIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTW 469

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  +  +  + T+  +INGL D     ++C LLE+++ KG++     F      L + 
Sbjct: 470 TEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEV 529

Query: 458 GREDVLKFLQEKM 470
           G    +  + E M
Sbjct: 530 GNLKAIHKVSEHM 542



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 133/302 (44%), Gaps = 30/302 (9%)

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134
           +A T    FF W  + ++ + +++    MIE+  K   +                   T+
Sbjct: 267 DANTFNVLFFGWC-RVRDPKKAMKLLEEMIEAGHKPENF-------------------TY 306

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLA-AFNGLLSALCKSKNVRKAQEIFDC 191
           C  +  + +   V+EA   F+ M   G  V+   A  F  ++ AL K+    KA+E F+ 
Sbjct: 307 CAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKND---KAEECFEL 363

Query: 192 MKDRF----IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +        +PD  TY  ++EG      +  A +   EM + G  PDIVTY   + VLC+
Sbjct: 364 IGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCE 423

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             + DEAL +   M  + C P+   Y++L+  +   +  + A +T+ EM+K   + DV  
Sbjct: 424 NRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVET 483

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y A+I      ++ K    +L+++ +KG+    R  +  L  L   G     ++V   M 
Sbjct: 484 YCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMK 543

Query: 368 KL 369
           K 
Sbjct: 544 KF 545


>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
 gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 218/429 (50%), Gaps = 6/429 (1%)

Query: 35  AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE 94
           AK++ +I+ ++    L  AL  + I  +P++V+DVL    +  + A  FF+WA   +  +
Sbjct: 17  AKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLTR--K 74

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           HS  +++ +++ L K  +++ MWD + +MR +  L++  F  +   Y  V +V EA+ +F
Sbjct: 75  HSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIMSF 134

Query: 155 NVMQKYGVTQNLAAFNGLLSAL-CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
            VM +YG+  ++AA N LLSA+ C+  +   A E F+ +K +  PD  T+ ILLEGW ++
Sbjct: 135 EVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWERE 194

Query: 214 PNLPRAREIFREM-VDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            N+ +A+  F EM V  G +P ++V Y  ++  L +   V+EA+  +  M    C P   
Sbjct: 195 GNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPGLK 254

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            +S  +     +N    A+  +  M   G + ++ MYN +IG  C A    N +R L +M
Sbjct: 255 FFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLDEM 314

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGEL 390
              GV  +S T N+I   L+   +  EA + F  MIK  C          I M   G + 
Sbjct: 315 VFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGDDP 374

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E A ++W YM      P   + + L+ GLC+    SD     EDM++  I+    T  KL
Sbjct: 375 EMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTMEKL 434

Query: 451 RKLLIKEGR 459
           +    K+GR
Sbjct: 435 KNARYKDGR 443


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 224/433 (51%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ ALD S + ++  +V  +L++ +     AF FF WA  Q++Y H   AY+ MI+ L+ 
Sbjct: 10  MEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV- 162
              K +Q++I+ D+++ M+   K ++  +    I+RKY   ++    V  F   ++  V 
Sbjct: 70  TKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYC--ERYLTHVQKFAKRKRIRVK 127

Query: 163 TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           TQ  + AFN LL ALCK   V++ + +   M+ R  PD+ T+++L  GW +  +  +A +
Sbjct: 128 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKKAMK 187

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM+  G  P+  TY   +D  C+AG VDEA  + + M    S V  PT+  +++++ 
Sbjct: 188 LLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIV 247

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                ++ E+  +    M   G L DV+ Y  +I   C A K +  Y+ L +M++KG  P
Sbjct: 248 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPP 307

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L    ++DEA +++ RM++  C     TY M+I MF +  + + AF  W
Sbjct: 308 DIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTW 367

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           K M  +  +  + T+ V+INGL D     ++C LLE+++ KG++     F      L   
Sbjct: 368 KEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLSTV 427

Query: 458 GREDVLKFLQEKM 470
           G    +  L E M
Sbjct: 428 GNLKAIHKLSEHM 440



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 140/313 (44%), Gaps = 11/313 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           + A++ ++++L K    +    L+  MR +   +  TF ++   + RV+  ++A+     
Sbjct: 132 INAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKKAMKLLEE 191

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGK 212
           M + G       +   +   C++  V +A ++F+ M  +      P +KT+++++    K
Sbjct: 192 MIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIVALAK 251

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +       E+   M+ TGC PD+ TY  +++ +C AG+V+EA   +  M +    P    
Sbjct: 252 NDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPPDIVT 311

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+  +       + ++A+  +  M ++     V  YN LI  F + +     +   K+M+
Sbjct: 312 YNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWKEMD 371

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEA----YRVFRRMIKLCEADADTYTMMIKMFCQGG 388
            +    +  T  +++NGL       EA      V  + +KL     D++ M +      G
Sbjct: 372 ERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLSTV---G 428

Query: 389 ELEKAFKVWKYMK 401
            L+   K+ ++MK
Sbjct: 429 NLKAIHKLSEHMK 441



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLA-AFNGLLSALCKSKNVRKAQEIF 189
           T+C  +  + +   V+EA   F  M   G  V+   A  F  ++ AL K+    KA+E F
Sbjct: 203 TYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFALMIVALAKND---KAEECF 259

Query: 190 DCMKDRF----IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           + +        +PD  TY  ++EG      +  A +   EM + G  PDIVTY   + VL
Sbjct: 260 ELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFLRVL 319

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C+  + DEAL +   M  + C P+   Y++L+  +   +  + A +T+ EM++   + D+
Sbjct: 320 CENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWKEMDERDCVQDI 379

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y  +I      ++ K    +L+++ +KG+    R  +  L  L   G     +++   
Sbjct: 380 ETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLMRLSTVGNLKAIHKLSEH 439

Query: 366 MIKL 369
           M K 
Sbjct: 440 MKKF 443


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 221/438 (50%), Gaps = 7/438 (1%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSV 97
           + +I+ ++P   ++  L  + IRVSPE VED L+        A  FF+W+  Q N  HS 
Sbjct: 66  LCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSP 125

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            +++ +++ L K   +  MWD V +M+ + +L++ TF  I   Y    +V EA+ TF+VM
Sbjct: 126 YSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVM 185

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           ++YG  +++ A N LLSA+C+     +A E    ++    PD+ TY+ILLEGW  + N  
Sbjct: 186 EQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCG 245

Query: 218 RAREIFREMV-DTGCNP-DIVTYGIMVDVLCKA--GRVDEALGIVKSMDSTVCRPTSFIY 273
            AR+ F EMV D G +P ++  Y   ++ L     GR  EA+   + M    C P    Y
Sbjct: 246 AARQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGR-REAMKFFEIMRDRQCSPGMRFY 304

Query: 274 SVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
            + +      +  + A   +  M  +N    D  MYN++I   C  +       +L +M 
Sbjct: 305 RIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMV 364

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELE 391
             G  P+S T N++   LI R + +EA+ +F  M++  C  D       ++++   G++ 
Sbjct: 365 CNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVY 424

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           KA KVWKY+          T ++L+ GL D   + ++    +DMI +GI+ +  T  KL+
Sbjct: 425 KAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLK 484

Query: 452 KLLIKEGREDVLKFLQEK 469
             L++ G+  V   L  K
Sbjct: 485 HALVEVGKGPVYDELLRK 502


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 221/438 (50%), Gaps = 7/438 (1%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSV 97
           + +I+ ++P   ++  L  + IRVSPE VED L+        A  FF+W+  Q N  HS 
Sbjct: 62  LCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSP 121

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            +++ +++ L K   +  MWD V +M+ + +L++ TF  I   Y    +V EA+ TF+VM
Sbjct: 122 YSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVM 181

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           ++YG  +++ A N LLSA+C+     +A E    ++    PD+ TY+ILLEGW  + N  
Sbjct: 182 EQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCG 241

Query: 218 RAREIFREMV-DTGCNP-DIVTYGIMVDVLCKA--GRVDEALGIVKSMDSTVCRPTSFIY 273
            AR+ F EMV D G +P ++  Y   ++ L     GR  EA+   + M    C P    Y
Sbjct: 242 AARQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGR-REAMKFFEIMRDRQCSPGMRFY 300

Query: 274 SVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
            + +      +  + A   +  M  +N    D  MYN++I   C  +       +L +M 
Sbjct: 301 RIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMV 360

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELE 391
             G  P+S T N++   LI R + +EA+ +F  M++  C  D       ++++   G++ 
Sbjct: 361 CNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVY 420

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           KA KVWKY+          T ++L+ GL D   + ++    +DMI +GI+ +  T  KL+
Sbjct: 421 KAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLK 480

Query: 452 KLLIKEGREDVLKFLQEK 469
             L++ G+  V   L  K
Sbjct: 481 HALVEVGKGPVYDELLRK 498


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 224/433 (51%), Gaps = 14/433 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA- 108
           ++ ALD+S + ++  +V  +L++ +     AF FF WA  Q++Y H   AY+ MI+ L+ 
Sbjct: 10  MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 69

Query: 109 ---KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV- 162
              K +Q++I+ D+++ M+   K ++ V+    I+RKY   ++    V  F   ++  V 
Sbjct: 70  TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYC--ERYLTHVQKFAKRKRIRVK 127

Query: 163 TQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           TQ  + AFN LL ALCK   V++ + +   M+ R  PD+ T+++L  GW +  +  +A +
Sbjct: 128 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMK 187

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +  EM++ G  P+  TY   +D  C+AG VDEA  +   M    S V  PT+  +++++ 
Sbjct: 188 LLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIV 247

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                ++ E+  +    M   G L DV+ Y  +I   C A K    Y+ L +M++KG  P
Sbjct: 248 ALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPP 307

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N  L  L    +TDEA +++ RM++  C     TY M+I MF +  + + AF  W
Sbjct: 308 DIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTW 367

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  +  +  + T+  +INGL D     ++C LLE+++ KG++     F      L + 
Sbjct: 368 TEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEV 427

Query: 458 GREDVLKFLQEKM 470
           G    +  + E M
Sbjct: 428 GNLKAIHKVSEHM 440



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 133/302 (44%), Gaps = 30/302 (9%)

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134
           +A T    FF W  + ++ + +++    MIE+  K   +                   T+
Sbjct: 165 DANTFNVLFFGWC-RVRDPKKAMKLLEEMIEAGHKPENF-------------------TY 204

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLA-AFNGLLSALCKSKNVRKAQEIFDC 191
           C  +  + +   V+EA   F+ M   G  V+   A  F  ++ AL K+    KA+E F+ 
Sbjct: 205 CAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKND---KAEECFEL 261

Query: 192 MKDRF----IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +        +PD  TY  ++EG      +  A +   EM + G  PDIVTY   + VLC+
Sbjct: 262 IGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCE 321

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             + DEAL +   M  + C P+   Y++L+  +   +  + A +T+ EM+K   + DV  
Sbjct: 322 NRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVET 381

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y A+I      ++ K    +L+++ +KG+    R  +  L  L   G     ++V   M 
Sbjct: 382 YCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMK 441

Query: 368 KL 369
           K 
Sbjct: 442 KF 443


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 222/422 (52%), Gaps = 25/422 (5%)

Query: 21  RYNSSEPSTEALDAAKS---ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           R  +S+    A D  KS   + K     PK  L+ AL++SG+ + P ++E VL +  +AG
Sbjct: 63  RTKNSKYDEFASDVEKSYRILRKFHSRVPK--LELALNESGVELRPGLIERVLNRCGDAG 120

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFC 135
            L + FF WA KQ  Y HS+  Y SM++ L+K+RQ+  +W L+  MR +  +++  E F 
Sbjct: 121 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 180

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           ++++++A    V++A+   + M K+G   +   F  LL ALCK  +V+ A ++F+ M+ R
Sbjct: 181 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 240

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
                          GK   +  A+ +  +M + G  PDIV Y  ++     AG++ +A 
Sbjct: 241 V--------------GK---MMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAY 283

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M      P +  Y+VL+      +R+E+A+  F+EME+    ADV  Y AL+  F
Sbjct: 284 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 343

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CK  K    Y VL DM  KG+ P+  T   I+     +   +E   +  +M ++    D 
Sbjct: 344 CKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDI 403

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y ++I++ C+ GE+++A ++W  M+     P + TF ++INGL  +G + ++    ++
Sbjct: 404 GIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKE 463

Query: 435 MI 436
           M+
Sbjct: 464 ML 465


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 230/463 (49%), Gaps = 16/463 (3%)

Query: 25  SEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           S PS E  + A+ +S+I+L+  +P   ++++L   GI +S  ++   L + R+   +A  
Sbjct: 29  SLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALS 88

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKY 141
           FF ++    +   +   Y+ +I+ L+K+RQ+ + W L+  M    +  N  TF I++R+ 
Sbjct: 89  FFHYSLSLPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRL 148

Query: 142 ARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
                  +A+  F+ M+ +   T N   F  LL  LCK   ++ A E+F+  K RF+P+ 
Sbjct: 149 ISAGFTRQAIRAFDDMESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFLPNV 208

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD-------- 252
           + Y++L+ GW K   +  A    REM + G   ++VTY +++D +C+  ++         
Sbjct: 209 RIYTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERT 268

Query: 253 --EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
             +A  +   M      P    +S+L+H Y   ++ +  VD    ME+ GI   VA Y +
Sbjct: 269 IMKADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTS 328

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR--RMIK 368
           ++   C   +  +   +L+ M   GV+PN+ T N       GR + + A +++R  R   
Sbjct: 329 VLKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQEN 388

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
           LC+    TY +++ MF +        ++W  ++     P + ++++L++GLC+K     +
Sbjct: 389 LCDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKA 448

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           C    +MIEKG+ P   TF  L   LI+       + L++K++
Sbjct: 449 CQFFVEMIEKGLLPQKATFEMLYAGLIQSNMLRTWRRLKKKLD 491



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V +F I++  Y+R  K +  V    +M++ G+   +A +  +L  LC    +  A+E+ 
Sbjct: 287 DVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLCSCGRIDDAEELL 346

Query: 190 DCM-KDRFIPDSKTYSILLEGWG--KDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVL 245
           + M ++   P++ TY+   + +   KDP    A +++R++  +  C+P + TY I++ + 
Sbjct: 347 EQMVRNGVSPNAATYNCFFKEYRGRKDPE--TALKLYRKIRQENLCDPSVHTYNILLGMF 404

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
            K  R +    I   + S+   P    Y++LVH    + + + A   F+EM + G+L   
Sbjct: 405 MKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLPQK 464

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           A +  L     ++N  +   R+ K ++ + +A  S   N
Sbjct: 465 ATFEMLYAGLIQSNMLRTWRRLKKKLDEESIAFGSEFSN 503


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 226/441 (51%), Gaps = 2/441 (0%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I+ ++ +     L+ AL      +   +V  VL +F++A   ++ FF+WA     + H+
Sbjct: 166 AIADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHT 225

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
              Y  M+  L K RQ++ M  L+  M     L+++ F + ++ +A   +++ AV  F +
Sbjct: 226 TITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAAAGEIKNAVGVFEL 285

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M+K G    + +FN LL AL      R+A+++FD M  ++ PD ++Y+ L+  W    NL
Sbjct: 286 MRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQYSPDLRSYTALMLAWCNARNL 345

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++ EM++ G  PD+V +  M++ L +  R  EA+ + + M +    P  + Y++L
Sbjct: 346 VEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTML 405

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    +++ A++ F EM++     DVA Y  L+  +  A +   V  VL++M  KG 
Sbjct: 406 ICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGC 465

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-ELEKAF 394
            P++RT N ++  L  R   D+A R++++MIK   +    TY MM+K +  G        
Sbjct: 466 PPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNYAMGC 525

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            VW+ M  +   P +++++V I+G    G   ++   +E+MI KG++       K    L
Sbjct: 526 AVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAPQIDCNKFAADL 585

Query: 455 IKEGREDVLKFLQEKMNLLVK 475
            K G+ D+L  L +K+    K
Sbjct: 586 SKAGKLDMLYELAQKVKFAGK 606


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 131/430 (30%), Positives = 208/430 (48%), Gaps = 10/430 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA-- 108
           + ALD  G  ++  +V DVL + R    LAF FF WA  Q  YEH    Y+ +I+ L+  
Sbjct: 100 EAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQGGYEHEAATYNDVIDILSGT 159

Query: 109 --KIRQYQIMWDLVNAM--RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             K RQ+ ++ D+++ M  R  R + V+    I+R Y                 +     
Sbjct: 160 RYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPP 219

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
              A N LL A CKS  VR+A+ +F  +K + + +++TYSIL  GW +  +  RA ++  
Sbjct: 220 ETDALNVLLDAFCKSGMVREAEAVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLE 279

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVHTYG 281
           EM+     P+  TY   +D  C AG V EA  + + M    ST+  PT+  YS+++    
Sbjct: 280 EMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALA 339

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              ++E+  +   EM K G + DV+ Y  LI      +K    Y VL +M   G  P+  
Sbjct: 340 KAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIV 399

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N  L  L G  + D+A  +  RMI+  CE    TY M++ MF +  E ++A  +W  M
Sbjct: 400 TYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEM 459

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             +    ++ T+  +I+GL D G   D+  LL+++I +G++ S + F  +   L   G  
Sbjct: 460 DKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRGMKLSYKKFDAIMLRLSAVGNL 519

Query: 461 DVLKFLQEKM 470
             +  L E M
Sbjct: 520 GAIHRLSEHM 529


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 218/428 (50%), Gaps = 14/428 (3%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           AL+  G+  +  ++  +L +F N    A   F WA+ Q  Y H    Y  M++ L + ++
Sbjct: 121 ALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKK 180

Query: 113 YQIMWDLVNAMRT-KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +  MW+LV  M   +  +++ T   +MR+ AR    ++AV  F  ++K GV +++ A N 
Sbjct: 181 FSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNV 240

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           L+ AL K  +V  A   F   KD    D ++++ILL G+ K   L  AR+I  EM   G 
Sbjct: 241 LMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGF 300

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P++V+Y   +++ CK         I   M    C+P    Y++ +H  G   ++  A++
Sbjct: 301 QPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALE 360

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            +  M+ N  + D + Y++LI    ++ + K+ + V +DM  +GV+P+  T N ++    
Sbjct: 361 VYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSAC 420

Query: 352 GRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
              E + A ++ RRM +  C+ D  TY  ++KM C+    +K  KV K++    F  ++ 
Sbjct: 421 THLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCR----KKRIKVLKFLLNHMFKNNIS 476

Query: 411 ----TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
               T+ +L+ GLC  G +  +C   E+M+ KG+ P   T+    K+L++E  ++ L   
Sbjct: 477 IDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTY----KMLVEELEQNNLTEA 532

Query: 467 QEKMNLLV 474
           +EK+  L+
Sbjct: 533 KEKIQKLM 540



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 146/318 (45%), Gaps = 2/318 (0%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
            +++ G+R   E +  +++     G++   +  + E + +     ++++ ++    K R+
Sbjct: 225 GIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARK 284

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                 +++ M  +    NV ++   +  Y +++        F+ MQ+     N+  +  
Sbjct: 285 LDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTI 344

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
            + AL K+K V KA E+++ MK    +PD+  YS L+    +   L  A ++F +M   G
Sbjct: 345 FMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQG 404

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
            +PD++TY  M+   C     + AL +++ M+   C+P    Y+ L+     + RI+   
Sbjct: 405 VSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLK 464

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
                M KN I  D+  Y  L+G  CK+ K +      ++M  KG+ P  RT  +++  L
Sbjct: 465 FLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEEL 524

Query: 351 IGRGETDEAYRVFRRMIK 368
                T+   ++ + M +
Sbjct: 525 EQNNLTEAKEKIQKLMFQ 542


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 233/473 (49%), Gaps = 18/473 (3%)

Query: 17  SFLRRYNS-SEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKF 73
             LRR+ S   PS      A+ ISK++L   +P    ++ L   GI ++P ++   L + 
Sbjct: 18  PLLRRFCSLPPPSPRDESDAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRL 77

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV-- 131
           +N   +A   F +A+   N   S  ++  +I+++AK+RQ+ + W L+  M  +  L    
Sbjct: 78  KNHSKIALSLFHYAKTLPNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTP 137

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA-FNGLLSALCKSKNVRKAQEIFD 190
            TF  ++R+        +AV  F+ +  +  T+     F  LL  LCK  +VR A E+F+
Sbjct: 138 STFLTLIRRLICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFN 197

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK--- 247
             K  F P  K Y++L+ GW K   +  A+    EM+D G  P++VTY ++++ +C+   
Sbjct: 198 KNKHTFPPTVKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVS 257

Query: 248 -------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
                     +  A  +   M  +   P    +S+L+H Y   ++ +  +D    M++ G
Sbjct: 258 LHPEERFERTIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKG 317

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           I  +V MY ++I         ++  R+L +M   GV+P + T N       GR + + A 
Sbjct: 318 ICPNVVMYTSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESAL 377

Query: 361 RVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
           R+F+RM +  LC   + TY ++I+MF +   ++   ++W+ MK     P +  ++VLI+G
Sbjct: 378 RMFKRMKEDGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHG 437

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           LC++    ++C    +MIE G  P   TF  L + LI+       + L++K++
Sbjct: 438 LCERQRWREACHYFVEMIENGFLPLKGTFESLYRGLIQADMLRTWRRLKKKLD 490



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 96/210 (45%), Gaps = 2/210 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V +F I++  Y+R  K +  +   ++M++ G+  N+  +  ++  L     +  A+ + 
Sbjct: 286 DVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYTSVIKCLASCGWLEDAERLL 345

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCK 247
            + ++D   P + TY+   + +    +   A  +F+ M + G C P   TY I++ +  +
Sbjct: 346 GEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKEDGLCMPSSHTYVILIRMFLR 405

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              +     I + M  T   P   +Y+VL+H      R  +A   F+EM +NG L     
Sbjct: 406 LDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWREACHYFVEMIENGFLPLKGT 465

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +L     +A+  +   R+ K ++ + + 
Sbjct: 466 FESLYRGLIQADMLRTWRRLKKKLDEESIT 495


>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 503

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 221/411 (53%), Gaps = 6/411 (1%)

Query: 34  AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY 93
           AAK+I ++++   +  +D AL  +G+  SPE+V++VL    N+ + A  FF+WA  +Q  
Sbjct: 57  AAKTICEVLVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAIKFFRWA--RQLA 114

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           + S  +++ MI+ L K   ++ MW+ +  MR +++L++ TF  +   Y    + +EA  T
Sbjct: 115 KQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCSAGRSKEARMT 174

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
           F VM +Y V +++ A N LLSA+C  +N   +A E F+  K++   D ++++ILLEGW K
Sbjct: 175 FEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGESFAILLEGWEK 234

Query: 213 DPNLPRAREIFREMVD-TGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           + N+ +A+  F EMV   G NP+ + +Y   +  L + GR ++A+ ++  +    C P  
Sbjct: 235 EGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKLKKNRCLPGL 294

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              S  + +   +N    A+  +  +  +G++ ++ +YNA+IG   + +K  + +R+L  
Sbjct: 295 KFLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKIDDSFRLLDS 354

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M   G  PNS T N+I + LI   +  E  + FR M+K  C     +    I M   G +
Sbjct: 355 MVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSCAAAITMLFDGYD 414

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            E A  +W YM      P   + + L+ GLC+   +++     +DMI++ I
Sbjct: 415 PETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMIDQRI 465



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 46/274 (16%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++ +M+D+L K    +E    +++M  +  +  PT   +  +  +Y    R ++A  TF 
Sbjct: 120 SWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPT---FVSVFGSYCSAGRSKEARMTFE 176

Query: 295 EMEKNGILADVAMYNALIGAFC-KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            M++  +  DV   N+L+ A C + N+    +   +    K +  +  +  I+L G    
Sbjct: 177 VMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEK-IPLDGESFAILLEGWEKE 235

Query: 354 GETDEAYRVFRRMIKLC---EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR------ 404
           G  ++A   F  M+K       +  +Y   +    +GG  E A KV   +K  R      
Sbjct: 236 GNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKLKKNRCLPGLK 295

Query: 405 -----------------------------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                                         +P++  ++ +I  L +   + DS  LL+ M
Sbjct: 296 FLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKIDDSFRLLDSM 355

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  G  P+  T+  +   LIK  + ++V +F +E
Sbjct: 356 VFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFRE 389


>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 221/411 (53%), Gaps = 6/411 (1%)

Query: 34  AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY 93
           AAK+I ++++   +  +D AL  +G+  SPE+V++VL    N+ + A  FF+WA  +Q  
Sbjct: 41  AAKTICEVLVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAIKFFRWA--RQLA 98

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           + S  +++ MI+ L K   ++ MW+ +  MR +++L++ TF  +   Y    + +EA  T
Sbjct: 99  KQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCSAGRSKEARMT 158

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
           F VM +Y V +++ A N LLSA+C  +N   +A E F+  K++   D ++++ILLEGW K
Sbjct: 159 FEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGESFAILLEGWEK 218

Query: 213 DPNLPRAREIFREMVD-TGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           + N+ +A+  F EMV   G NP+ + +Y   +  L + GR ++A+ ++  +    C P  
Sbjct: 219 EGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKLKKNRCLPGL 278

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              S  + +   +N    A+  +  +  +G++ ++ +YNA+IG   + +K  + +R+L  
Sbjct: 279 KFLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKIDDSFRLLDS 338

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M   G  PNS T N+I + LI   +  E  + FR M+K  C     +    I M   G +
Sbjct: 339 MVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSCAAAITMLFDGYD 398

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            E A  +W YM      P   + + L+ GLC+   +++     +DMI++ I
Sbjct: 399 PETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMIDQRI 449



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 46/274 (16%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++ +M+D+L K    +E    +++M  +  +  PT   +  +  +Y    R ++A  TF 
Sbjct: 104 SWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPT---FVSVFGSYCSAGRSKEARMTFE 160

Query: 295 EMEKNGILADVAMYNALIGAFC-KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            M++  +  DV   N+L+ A C + N+    +   +    K +  +  +  I+L G    
Sbjct: 161 VMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEK-IPLDGESFAILLEGWEKE 219

Query: 354 GETDEAYRVFRRMIKLC---EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR------ 404
           G  ++A   F  M+K       +  +Y   +    +GG  E A KV   +K  R      
Sbjct: 220 GNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLKLKKNRCLPGLK 279

Query: 405 -----------------------------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                                         +P++  ++ +I  L +   + DS  LL+ M
Sbjct: 280 FLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSKIDDSFRLLDSM 339

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  G  P+  T+  +   LIK  + ++V +F +E
Sbjct: 340 VFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFRE 373


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 250/477 (52%), Gaps = 15/477 (3%)

Query: 4   VYHSRNKMISGC-ISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIRV 61
           ++ S ++ IS   IS L     S   T   D  + + +I+ SS  V  L  +L  +GI +
Sbjct: 7   LFPSNSRYISKTPISLLANLFFSTNPTSLNDDVEVVYRIITSSSSVQNLKQSLTSTGIFL 66

Query: 62  SPEIVEDVLEK--FRNAGTL-AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           S ++++ VL++  F +   L A  FF + + ++ + H+  +  +++  L + R++  +WD
Sbjct: 67  SNDLIDKVLKRVRFSHGNPLQALEFFYYTDNRKGFYHTPYSLDTILYILGRSRKFDHIWD 126

Query: 119 LVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           ++  M+ K   +++  T  I++ + A++  V + V +F   +K+    +   FN LL  L
Sbjct: 127 VLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFRKFKKFVSVLDTTCFNALLRTL 186

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           C+ K++  A+ ++  +K  F P+ +T++ILL GW +      A   F EM + G  PD+V
Sbjct: 187 CQEKSMTDARNVYHRLKKEFKPNLQTFNILLSGWKQSE---EAELFFEEMRELGIKPDVV 243

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y  ++DV CK   +++A  +V+ M      P    Y+ ++   G+  + + A D   EM
Sbjct: 244 SYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEM 303

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           ++ G   DVA YNA+I  +C A +  +   ++ +M SKG++PN+ T N+         + 
Sbjct: 304 KEYGCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDL 363

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             ++ ++RRM++  C  +  +   +I++F +  ++E A  +W  M  K F   +    VL
Sbjct: 364 RNSWSLYRRMMESGCLPNTQSCMFLIRLFRKHEKVEMALTLWNDMVEKGFGSYILVSDVL 423

Query: 416 INGLCDKG--IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            + LCD G  + ++ C L   MIEKG +PS  +F +++ L+    + D L  LQ+KM
Sbjct: 424 FDLLCDMGKLVEAEKCFL--QMIEKGHKPSNVSFRRIKVLMELVNKHDALLNLQKKM 478


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 220/437 (50%), Gaps = 12/437 (2%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L +  + V+  +V  VL +F N    A+ FF WA  Q  Y HS   Y++M++ L K R +
Sbjct: 123 LSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNF 182

Query: 114 QIMWDLVNAM---RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAF 169
            +MW+LVN M      +++ ++T   +MR+ A+  K  +AV  F  M+K YGV  +  A 
Sbjct: 183 DLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAM 242

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N L+ AL K  ++  A E+F  + D   PD++T++IL+ G+ K      AR +   M  T
Sbjct: 243 NSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVT 302

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
              PD+VTY   V+  CK G       +++ M    C P    Y++++H+ G   ++ +A
Sbjct: 303 EFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEA 362

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +  + +M+++G + D   Y++LI    K  +FK+   + +DM ++GV  +    N +++ 
Sbjct: 363 LGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISA 422

Query: 350 LIGRGETDEAYRVFRRMI----KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
            +     + A R+ +RM     + C  + +TY  ++KM C   +++    +  +M     
Sbjct: 423 ALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDV 482

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET----FGKLRKLLIKEGRED 461
              + T+ +LI GLC  G V ++C+  E+ + KG+ P   T      +L K  + E +  
Sbjct: 483 SIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKKNMAEAKLK 542

Query: 462 VLKFLQEKMNLLVKEPL 478
           +   +Q K  +    PL
Sbjct: 543 IQSLVQSKTMIDSHSPL 559


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/430 (30%), Positives = 207/430 (48%), Gaps = 10/430 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA-- 108
           + ALD  G  ++  +V DVL + R    LAF FF WA  Q  YEH    Y+ +I+ L+  
Sbjct: 100 EAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAATYNDVIDILSGT 159

Query: 109 --KIRQYQIMWDLVNAM--RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             K RQ+ ++ D+++ M  R  R + V+    I+R Y                 +     
Sbjct: 160 RYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPP 219

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
              A N LL A CK   VR+A+ +F  +K + + +++TYSIL  GW +  +  RA ++  
Sbjct: 220 ETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLE 279

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVHTYG 281
           EM+     P+  TY   +D  C AG V EA  + + M    ST+  PT+  YS+++    
Sbjct: 280 EMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALA 339

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              ++E+  +   EM K G + DV+ Y  LI      +K    Y VL +M   G  P+  
Sbjct: 340 KAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIV 399

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N  L  L G  + D+A  +  RMI+  CE    TY M++ MF +  E ++A  +W  M
Sbjct: 400 TYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEM 459

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             +    ++ T+  +I+GL D G   D+  LL+++I +G++ S + F  +   L   G  
Sbjct: 460 DKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGMKLSYKKFDAIMLRLSAVGNL 519

Query: 461 DVLKFLQEKM 470
             +  L E M
Sbjct: 520 GAIHRLSEHM 529


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 226/445 (50%), Gaps = 24/445 (5%)

Query: 42  MLSSPKV-VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY 100
           +LS P +  L+TALDQ+GI+    ++  V + F ++  L    F WA+KQ  +E S   +
Sbjct: 67  LLSDPNLKPLETALDQTGIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLF 126

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +S+I +L K++++   W LV  +    +++ +TF I++R+Y R    + A+ TF    +Y
Sbjct: 127 NSVINALGKMKEFDSAWCLV--LDRTGLVSSDTFAILIRRYTRAGMPQSAIRTF----EY 180

Query: 161 GVTQNL-------AAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGW 210
            ++ +        A    LL +LCK  +VR A+E FD  K     +IP  + Y+I+L GW
Sbjct: 181 AISLDFICDYNCDALLEILLDSLCKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGW 240

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +   L  A  ++ EM     +P +VTYG +V+  C+  RV+ A+ +V  M      P +
Sbjct: 241 FRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNA 300

Query: 271 FIYSVLVHTYGVENRIEDA---VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
            +Y+ ++     E R ++    ++ FL+ E       ++ YN+L+  +CKA       +V
Sbjct: 301 LVYNPIIDALAEEGRFKEVSGMMEYFLQSESG---PTISTYNSLVKGYCKAKDPVGASKV 357

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQ 386
           LK M S+G  P   T N         G  +E   ++ +MI+     D  T+ +++KM C+
Sbjct: 358 LKMMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCE 417

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              L+ A ++ K M+ +     + T ++LI+  C      ++ +  EDMI+KGI P   T
Sbjct: 418 EERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLT 477

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMN 471
           F +L   L K G  +  + L + M+
Sbjct: 478 FQRLNDELRKRGMVERARKLSDMMS 502


>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 488

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 212/429 (49%), Gaps = 6/429 (1%)

Query: 35  AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE 94
           A+++  I+  S    +++AL  SGI    E   +VL    N  + A  FF+WA + +  +
Sbjct: 43  ARALCDILTRSSPQDIESALSSSGIVPEEECTNEVLRLSYNYPSSAVKFFRWAGRGK--K 100

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           H V  ++ M++ L K + ++ MWD V +M+ ++ L++ TF  + + Y    +  EAV +F
Sbjct: 101 HPVHTWNLMVDLLGKNQLFEPMWDAVRSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSF 160

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRK-AQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           +VM +YGV Q++ A N LLSA+C   N      E F+ +K +  PD  T++ILLEGW K+
Sbjct: 161 DVMDRYGVKQDVVAVNSLLSAICSEDNQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKE 220

Query: 214 PNLPRAREIFREMV-DTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            N  +A+  F +MV   G N D +  Y   +  L +AG +D+ +  ++ M    C P   
Sbjct: 221 GNAAKAKTTFGDMVAHIGWNKDNVAAYDAFLMTLLRAGLMDDVVRFLQVMKDHDCFPGLK 280

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++  +     +N  + AV  +  M    ++ ++ MYNA+IG  C      + +R+L +M
Sbjct: 281 FFTTALDFLVKQNDADHAVPVWDVMVSGELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEM 340

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGEL 390
              G  P+S T N+I   L+   +  E  R F  M+K             I M     + 
Sbjct: 341 AFHGAFPDSLTYNMIFECLVKNKKARETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDP 400

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E A ++W Y+   R  P   + + L+ GLC+    ++     ED++++ I     T   L
Sbjct: 401 EAAHEIWSYVVENRVKPLDESANALLIGLCNMSRFTEVKRFAEDILDRRINIYQSTMSIL 460

Query: 451 RKLLIKEGR 459
           +    KEGR
Sbjct: 461 KDAFYKEGR 469


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 209/405 (51%), Gaps = 11/405 (2%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA----YHSMIE 105
           ++ AL    + ++ + V  VL + R+    AF FF W  K+   E         Y+ ++ 
Sbjct: 110 IERALSLCDLVLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVIYNEILV 169

Query: 106 SLAKIRQYQ-IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
            L K R+++ +   LV   + K ++N ET+ +++ +YA   KVEEA+  F   Q++G+  
Sbjct: 170 ILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQEFGLEM 229

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           NL AF  LL  LC+ K+V  A+ +F   K  F+ D KT +I+L GW    N+  A+  +R
Sbjct: 230 NLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVTDIKTSNIILNGWCVLGNVHEAKRFWR 289

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           E++++ C PDI TYG +++ L K G++  AL + ++M          I + ++     + 
Sbjct: 290 EIIESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNCIIDALCFKK 349

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPNSRT 342
           RI +A++ F EM + G  A+VA YN LI   CK  + + V  +L +M  +     PNS T
Sbjct: 350 RIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEERKGSCWPNSVT 409

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
              +L  + G    +E   +F+RM +  C+  +D Y ++++++      E+    W  MK
Sbjct: 410 FIYLLGSVRG---PEEVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQERVKSTWNEMK 466

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
                P   +++++I+GL +KG   D      +M  KGI P  +T
Sbjct: 467 EMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIMPEPKT 511



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 9/245 (3%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P  V Y  ++ +L K  R +E   ++  M           YSVL++ Y   +++E+A+  
Sbjct: 159 PGSVIYNEILVILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISI 218

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F   ++ G+  ++  + +L+   C+    +    +      + V  + +T NIILNG   
Sbjct: 219 FYRRQEFGLEMNLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVT-DIKTSNIILNGWCV 277

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G   EA R +R +I+  CE D  TY  +I    + G+L  A K+++ M  +     +  
Sbjct: 278 LGNVHEAKRFWREIIESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVI 337

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            + +I+ LC K  + ++  + ++M E+G   +  T+  L K L K  R        EK+N
Sbjct: 338 CNCIIDALCFKKRIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRR-------MEKVN 390

Query: 472 LLVKE 476
            L+ E
Sbjct: 391 ELLNE 395


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 219/440 (49%), Gaps = 17/440 (3%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           P   L+ ALD++GI  S  ++E V + F ++       F WA K+  +  S   ++ +I 
Sbjct: 103 PGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLIN 162

Query: 106 SLAKIRQYQIMWDLVNA-MRTKR---MLNVETFCIIMRKYARVQKVEEAVYTFNV---MQ 158
            LAK R++   W L+ + +R      +++VE F I++R+YAR   V+ A+ T+     ++
Sbjct: 163 VLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFACNLE 222

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC---MKDRFIPDSKTYSILLEGWGKDPN 215
               T +   F  LL +LCK  +VR A E F+    M   F P  + Y+IL+ GW +   
Sbjct: 223 TISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRK 282

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A+ ++ EM     +P +VTYG +++  C+   V+ A+ +V  M      P + +Y+ 
Sbjct: 283 LKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNP 342

Query: 276 LVHTYGVENRIEDAV---DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           +V   G   R ++A+   + F+ +E+      ++ YN+L+  +CKA       ++LK M 
Sbjct: 343 IVDALGEAGRFKEALGMMERFMVLEQG---PTISTYNSLVKGYCKAGDLSGASKILKMMI 399

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELE 391
            +G  P   T N         G+ +E+  ++ +MI+   A D  TY +++KM C+   L 
Sbjct: 400 GRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLN 459

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A +V   MK + F   + T ++L++ LC      ++    E MI +GI P   TF +L 
Sbjct: 460 LAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLH 519

Query: 452 KLLIKEGREDVLKFLQEKMN 471
              +K G   +   LQE M+
Sbjct: 520 DEFMKRGLTKMASKLQEMMS 539



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 147/324 (45%), Gaps = 16/324 (4%)

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLV 120
           EI+ D L K  +    +  F +  E   ++E S+RAY+ +I       K++  Q +W   
Sbjct: 234 EILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLW--F 291

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
              + K    V T+  ++  Y R++ VE A+   + M++ G+  N   +N ++ AL ++ 
Sbjct: 292 EMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAG 351

Query: 181 NVRKAQEIFDCMKDRFI-----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
             ++A      M +RF+     P   TY+ L++G+ K  +L  A +I + M+  G  P  
Sbjct: 352 RFKEAL----GMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTP 407

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY        K G+++E++ +   M  +   P    Y +L+     E R+  AV    E
Sbjct: 408 TTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNE 467

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+  G   D+A    L+   CK +KF+  +   + M  +G+ P   T   + +  + RG 
Sbjct: 468 MKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKRGL 527

Query: 356 TDEAYRVFRRM--IKLCEADADTY 377
           T  A ++   M  +   E   DTY
Sbjct: 528 TKMASKLQEMMSSVPHSEKLPDTY 551



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/313 (18%), Positives = 121/313 (38%), Gaps = 42/313 (13%)

Query: 173 LSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           +S++   ++VR    + D + DR   +P S     + + +   P    +  ++     +G
Sbjct: 92  ISSILSDRSVRPGAALEDAL-DRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLW-AAKKSG 149

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P    +  +++VL K+   D A  ++ S                        R+    
Sbjct: 150 FRPSAALFNRLINVLAKSREFDSAWSLITS------------------------RLRGGE 185

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK---DMNSKGVAPNSRTCNIIL 347
           ++FL          V ++  LI  + +A   +   R  +   ++ +     +     I+L
Sbjct: 186 ESFL--------VSVEVFVILIRRYARAGMVQPAIRTYEFACNLETISGTGSEGLFEILL 237

Query: 348 NGLIGRGETDEAYRVF---RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           + L   G    A   F   R M    E     Y ++I  + +  +L+ A ++W  MK  +
Sbjct: 238 DSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWFEMKKNK 297

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P++ T+  LI G C    V  +  L+++M  +GI P+   +  +   L + GR     
Sbjct: 298 ISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAGRFKEAL 357

Query: 465 FLQEKMNLLVKEP 477
            + E+  +L + P
Sbjct: 358 GMMERFMVLEQGP 370


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 225/432 (52%), Gaps = 13/432 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF---CFFKWAEKQQNYEHSVRAYHSMIES 106
           L  +L  SG+ +S ++++ VL++ R +    F    FF +  K++ + H+  +  +M+  
Sbjct: 76  LKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQALAFFNYTNKRKGFYHTPFSLDTMLYI 135

Query: 107 LAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           L + R++  +W+L+  MR K   +++  +  +++ + A+V  V++ V +F   +K     
Sbjct: 136 LGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVLGRIAKVCSVKQTVESFRKFKKLVPEF 195

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           + A FN LL  LC+ K++R A+ ++  +K  F PD +T++ILL GW    +   A   F 
Sbjct: 196 DTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRTFNILLSGW---KSAEEAEGFFD 252

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM + G  PD+V+Y  ++DV CK   ++ A  ++  M      P    Y+ ++   G+  
Sbjct: 253 EMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLGLVG 312

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           + + A D   EM++ G   DVA YNA I  FC AN+  +   ++ +M  KG++PN+ T N
Sbjct: 313 QPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYN 372

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           +         +   +  +++RM K  C  +  +   + ++F +  ++E A ++W  M  K
Sbjct: 373 LFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSCMFLTRLFRRQEKVEMALELWNDMVEK 432

Query: 404 RFIPSMHTFSVLINGLCDKG--IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            F   +    VL + LCD G  +  + C L   MIEKG +PS  +F +++ L+    + +
Sbjct: 433 GFGSYILVSDVLFDMLCDMGKLVEVEKCCL--QMIEKGHKPSNVSFRRIKVLMELANKHE 490

Query: 462 VLKFLQEKMNLL 473
            L+ L EKM + 
Sbjct: 491 ALQNLTEKMAMF 502


>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
 gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
          Length = 551

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 207/430 (48%), Gaps = 10/430 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA-- 108
           + ALD  G  ++  +V DVL + R    LAF FF WA  Q  Y H    Y+ +I+ L+  
Sbjct: 96  EAALDALGTELTTPLVADVLHRLRYEEKLAFRFFAWASHQDGYSHESATYNDIIDILSGT 155

Query: 109 --KIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             K RQ+ ++ ++++ M+    R + VE    I+R Y                 +     
Sbjct: 156 RYKSRQFGVLCNVLDHMKRHGTRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRLRTPP 215

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
              A N LL A CK   V++A+ +F  +K R + +++TYSIL  GW +  +  +A ++  
Sbjct: 216 ETDALNVLLDAFCKCGMVKEAEAVFGRVKRRLLGNAETYSILFFGWCRARDPKKAMKVLE 275

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEA---LGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           EM+     P+  TY   ++  C AG V EA      +++  ST+  PT+  YS+++    
Sbjct: 276 EMIQMKHTPESFTYIAAIESFCSAGLVSEARELFEFMRTEGSTISSPTAKTYSIMIVALA 335

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +R+E+  +   +M   G + DV+ Y  LI   C   K    YRVL++M   G  P+  
Sbjct: 336 KADRMEECFELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGRAGFPPDIV 395

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N  LN L    + D+A  +  RMI+  CE    TY M++ MF + GE  +A  +W  M
Sbjct: 396 TYNCFLNVLCSLRKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMGEAHRALDIWLEM 455

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             +    ++ T+ ++I+GL D G    +  LL+++I + ++ S + F  +   L   G  
Sbjct: 456 DTRGCQRAIDTYEIMIDGLFDCGKTEHATSLLDEVINRDMKLSYKKFDAIMLRLSAVGDL 515

Query: 461 DVLKFLQEKM 470
             +  L E M
Sbjct: 516 GAIHRLSEHM 525


>gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15200
 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 232/434 (53%), Gaps = 10/434 (2%)

Query: 18  FLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           F  R+N  +    ALD    I     SSP+ +    LD+ GI ++ E+V +V+ + R+  
Sbjct: 65  FPNRFNDDKDKQSALDVHNIIKHHRGSSPEKI-KRILDKCGIDLTEELVLEVVNRNRSDW 123

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFC 135
             A+   +   KQ  +  S   Y+ +++ L K+R+++    + + M +KR   +N +T+ 
Sbjct: 124 KPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEM-SKRDGFVNEKTYE 182

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +++ +YA   KV+EAV  F   +++G+  +L AF+GLL  LC+ K+V  A+ +F   +  
Sbjct: 183 VLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRRE 242

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F  D K  +++L GW    N+  A+  +++++ + C PD+V+YG M++ L K G++ +A+
Sbjct: 243 FGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAM 302

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + ++M  T   P   I + ++     + RI +A++ F E+ + G   +V  YN+L+   
Sbjct: 303 ELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHL 362

Query: 316 CKANKFKNVYRVLKDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEA 372
           CK  + + V+ ++++M  KG   +PN  T + +L       + D    V  RM K  CE 
Sbjct: 363 CKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVD---IVLERMAKNKCEM 419

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
            +D Y +M +++ Q  + EK  ++W  M+     P   T+++ I+GL  KG + ++    
Sbjct: 420 TSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYF 479

Query: 433 EDMIEKGIRPSGET 446
           ++M+ KG+ P   T
Sbjct: 480 QEMMSKGMVPEPRT 493



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 2/236 (0%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++DVL K  R +E   +   M           Y VL++ Y   +++++AV  F   +
Sbjct: 146 YNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERRK 205

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + GI  D+  ++ L+   C+  K       L     +    + +  N+ILNG    G   
Sbjct: 206 EFGIDDDLVAFHGLLMWLCRY-KHVEFAETLFCSRRREFGCDIKAMNMILNGWCVLGNVH 264

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA R ++ +I   C  D  +Y  MI    + G+L KA ++++ M   R  P +   + +I
Sbjct: 265 EAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVI 324

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           + LC K  + ++  +  ++ EKG  P+  T+  L K L K  R + +  L E+M L
Sbjct: 325 DALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMEL 380


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 232/472 (49%), Gaps = 19/472 (4%)

Query: 18  FLRRYNSSEPSTEAL----------DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVE 67
           FLR Y S  P T  L          D  K  + +  +S    L  +L  + I +S E+++
Sbjct: 2   FLRHYTSKSPFTSILRRLSTFNPNDDVHKVYTILTTTSSPETLKQSLKSTQIFLSNELID 61

Query: 68  DVLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
            VL++ R           FF++  +++ + H+  +  +M+  L + R +  +W+L+   R
Sbjct: 62  QVLKRVRFGHANPNQTLEFFRYTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEAR 121

Query: 125 TK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
            K   ++   T  +++ + A+V  V + V TF   +K      +  FN LL  LC+ K++
Sbjct: 122 RKDQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKKIVPDYGVNCFNALLRTLCQEKSM 181

Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
             A+ ++  +K  F P+ +T++ILL GW    N+  A     EM + G  PD+VTY  +V
Sbjct: 182 TDARNVYHSLKHNFRPNLQTFNILLSGW---KNVEDAELFVNEMKEMGVEPDVVTYNSLV 238

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           DV CK   +++A  +   M      P    Y+ ++   G+  + + A D   EM++ G+ 
Sbjct: 239 DVYCKGREIEKAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVY 298

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  YNA I  +C A +    + ++ +M +KG++PN+ T N+         +   ++ +
Sbjct: 299 PDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNL 358

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           ++RM+ + C     +   +I++F +  ++E A ++W  M  K F        VL + LCD
Sbjct: 359 YKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGFGSYTLVSDVLFDMLCD 418

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            G + ++     +MIEKG RPS  +F +++ L+    + + ++ L +KM + 
Sbjct: 419 MGKLMEAEKCFLEMIEKGQRPSNVSFKRIKVLMELANKHEAIQNLTQKMAIF 470


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 229/421 (54%), Gaps = 10/421 (2%)

Query: 31  ALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           A+D    I     SSP+ + +  LD+ GI+++ E+V +V+ + R+    A+   +   K 
Sbjct: 72  AVDVHNIIKHHRGSSPEEI-ERILDKCGIQLTEELVFEVVNRNRSDWKPAYILSRLIVKH 130

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVE 148
             Y  S   Y+ +++ L K+R+++    +V+ M +KR   ++ +T+ +++ +YA   KV+
Sbjct: 131 SVYISSSLVYNEILDVLGKMRRFEEFHQVVDEM-SKRDGFVDEKTYEVLLNRYAAAHKVD 189

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
           EAV  F   +++G+  +L AF+GLL  LC+ K+V  A+ +F   +  F  D +T +I+L 
Sbjct: 190 EAVGVFERRREFGIEDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIRTMNIILN 249

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           GW    N+  A+ I+++++ + C PD+V+YG M++ L K G++ +A+ + +++  T   P
Sbjct: 250 GWCVLGNVHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRALWETGRNP 309

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
              I + ++     + RI +A++ F EM + G   +V  YN+L+   CK  + + V+ ++
Sbjct: 310 DVKICNNVIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELV 369

Query: 329 KDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFC 385
           ++M  KG   +PN  T   +L       + D    V  RM K  CE  +D Y +M +++ 
Sbjct: 370 EEMEHKGGSCSPNDVTFGYLLKYSQRSKDVDA---VLERMAKNKCEMTSDLYNLMFRLYV 426

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q    EK  ++W  M+     P   T+++ I+GL  KG + ++    ++M+ KG+ P   
Sbjct: 427 QWDNEEKVREIWGEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPR 486

Query: 446 T 446
           T
Sbjct: 487 T 487



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 2/236 (0%)

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           + Y  ++DVL K  R +E   +V  M           Y VL++ Y   +++++AV  F  
Sbjct: 138 LVYNEILDVLGKMRRFEEFHQVVDEMSKRDGFVDEKTYEVLLNRYAAAHKVDEAVGVFER 197

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
             + GI  D+  ++ L+   C+  K       L     +    + RT NIILNG    G 
Sbjct: 198 RREFGIEDDLVAFHGLLMWLCRY-KHVEFAETLFCSRRREFGCDIRTMNIILNGWCVLGN 256

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA R+++ +I   C+ D  +Y  MI    + G+L KA ++++ +      P +   + 
Sbjct: 257 VHEAKRIWKDIIASKCKPDVVSYGTMINALTKKGKLGKAMELYRALWETGRNPDVKICNN 316

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +I+ LC K  + ++  + ++M EKG  P+  T+  L K L K  R + +  L E+M
Sbjct: 317 VIDALCFKKRIPEALEVFKEMSEKGPSPNVVTYNSLLKHLCKIRRTEKVWELVEEM 372


>gi|116793367|gb|ABK26722.1| unknown [Picea sitchensis]
          Length = 198

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 127/183 (69%), Gaps = 7/183 (3%)

Query: 20  RRYNSSEPSTEALD-------AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           RR+  S   T  LD       + K I KI+ SSP   +   L +S +  SP++VE+VL +
Sbjct: 15  RRFVHSSAQTRTLDGDRLQAKSLKKICKILTSSPTADVSEVLQKSKVEASPKLVEEVLMR 74

Query: 73  FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
           F NAG  A+ FF+WA KQQ+Y HSV AYH +I+SL KI+QY +MW +VN M+ K +L  E
Sbjct: 75  FENAGMQAYRFFEWAGKQQDYAHSVEAYHIIIDSLGKIQQYGLMWTVVNLMKIKGVLTKE 134

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF IIMR+YAR +K+EEAVYTF+ M+K+GV  +L AFN LLSALCK K VRKAQE+FD M
Sbjct: 135 TFAIIMRRYARAKKIEEAVYTFDTMEKFGVLPDLEAFNSLLSALCKCKKVRKAQEVFDLM 194

Query: 193 KDR 195
           K R
Sbjct: 195 KVR 197



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMD--STVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           +  Y I++D L K  +      +V  M     + + T   +++++  Y    +IE+AV T
Sbjct: 99  VEAYHIIIDSLGKIQQYGLMWTVVNLMKIKGVLTKET---FAIIMRRYARAKKIEEAVYT 155

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           F  MEK G+L D+  +N+L+ A CK  K +    V   M 
Sbjct: 156 FDTMEKFGVLPDLEAFNSLLSALCKCKKVRKAQEVFDLMK 195


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 216/417 (51%), Gaps = 12/417 (2%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           S+    L  AL Q  + +  +I+  VL+K R+   +A  FF WA     Y H  RAY  M
Sbjct: 91  SADNTDLSGALHQFAVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPGYAHGSRAYTEM 150

Query: 104 IESLA---KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           ++ L    K+R  + ++D +   R + ++  + F +++ +YA   KV+EA+  F + + Y
Sbjct: 151 LDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAIEVFYLRKDY 210

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           G   +L  F  LL +LC+ K+V +A+ +F   KD F   +K+++I+L GW    +L  A+
Sbjct: 211 GFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWNIILNGWCVKGSLRDAQ 270

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            I+ +++ +    D+ T+G  ++ L K GR+  A+ + K M      P   I + ++   
Sbjct: 271 RIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEKGINPDVAICNCIIDQL 330

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             + +I +A++ F EM      ADVA YN LI   CK  + + VY +L DM +KG  PN+
Sbjct: 331 CFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKVYELLDDMEAKGCPPNN 390

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
           RT + IL       +  +   + +RM +  C+ D+D Y +++ ++ +    +   ++W  
Sbjct: 391 RTYSYILKTT---EKPKDVIALMQRMERTGCKLDSDIYNLILNLYIKWKYEKGMQQIWDE 447

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           M+ +   P   +F+++++GL  +G + ++      M  +G+ P   T     K+L+K
Sbjct: 448 MERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGMIPEPRT-----KILVK 499



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 4/155 (2%)

Query: 308 YNALIGAFCKANKFKNVYRVLKDM--NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR- 364
           Y  ++    +  K +++ ++  ++    + V   ++   ++LN   G  +  EA  VF  
Sbjct: 147 YTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQEAIEVFYL 206

Query: 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           R     E D   + +++   C+   +E+A  +++  K   F     ++++++NG C KG 
Sbjct: 207 RKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKK-DEFPHVTKSWNIILNGWCVKGS 265

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           + D+  +  D+I   +     TFG     L K GR
Sbjct: 266 LRDAQRIWNDIIASKVERDLFTFGTFINALAKNGR 300


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 209/402 (51%), Gaps = 3/402 (0%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCII 137
           +A+ FFKW   Q+    SVRA  +++E L   R++    +++  + +++ +L    F  +
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIEL 60

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
            R YA    +E++V     M+ +      +A+N L+ A  K+   +KA  ++  M    +
Sbjct: 61  ARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGL 120

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ T+++L+  + K   +    ++F EM +  C+P+++TY I++D +CK G V++AL 
Sbjct: 121 RPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +   M S  CRP  F Y+ ++   G    ++ A   F EM   G++A   +YN+LI    
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           ++ +     ++ ++M SKG+ P+  T   ++ GL   G   EA R+F+    + C  D +
Sbjct: 241 RSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVN 300

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y ++I   C+   L++A++++  ++    +P ++TF+ L++GLC  G + D+ +LL DM
Sbjct: 301 LYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDM 360

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
              G  P    +  L   L K GR +    L  +M  L  EP
Sbjct: 361 KRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEP 402



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 177/378 (46%), Gaps = 7/378 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ-QNYEHSVRAYHSMIESLAKIRQ 112
           + QSG+R        ++  F+ A  +   +  + E Q QN   +V  Y  +I+++ K   
Sbjct: 115 MGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGG 174

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +    +   M+++    N+ T+  ++    +   V++A + F  M   G+      +N 
Sbjct: 175 VEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNS 234

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+  L +S     A ++F  M  + + PD  T++ L+ G G       AR IF+E  D G
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C  D+  Y +++D LCK+ R+DEA  I   ++     P  + ++ L+       RI DA 
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF 354

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               +M++ G   DV +YN LI    K+ + +   ++L +M S G  P+  T N +++  
Sbjct: 355 ILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDES 414

Query: 351 IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR----FI 406
              G  ++A R+F  +     A+  TY  ++   C  G +++A+K++  MK +       
Sbjct: 415 CKGGRIEDALRLFEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVID 474

Query: 407 PSMHTFSVLINGLCDKGI 424
           P   T++ L+NG    G+
Sbjct: 475 PDFVTYTTLLNGARQAGL 492


>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera]
          Length = 493

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 205/405 (50%), Gaps = 6/405 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           I  +P++V+DVL    +  + A  FF+WA   +  +HS  +++ +++ L K  +++ MWD
Sbjct: 41  IPPTPDVVQDVLRLSYSNXSAAVEFFRWAGLTR--KHSAHSWNLIVDLLGKNSKFEPMWD 98

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-C 177
            + +MR +  L++  F  +   Y  V +V EA+ +F VM +YG+  ++AA N LLSA+ C
Sbjct: 99  AIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICC 158

Query: 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNP-DI 235
           +  +   A E F+ +K +  PD  T+ ILLEGW ++ N+ +A+  F EM V  G +P ++
Sbjct: 159 EGGSTTLALEFFEKIKVKITPDGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSPQNM 218

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           V Y  ++  L +   V+EA+  +  M    C P    +S  +     +N    A+  +  
Sbjct: 219 VAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIALWDI 278

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G + ++ MYN +IG  C A    N +R L +M   GV  +S T N+I   L+   +
Sbjct: 279 MLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLDEMVFYGVFADSFTYNMIFQCLVKHKK 338

Query: 356 TDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA + F  MIK  C          I M   G + E A ++W YM      P   + + 
Sbjct: 339 VHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGDDPEMAIEIWSYMIENSLSPVDESANA 398

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L+ GLC+    SD     EDM++  I+    T  KL+    K+GR
Sbjct: 399 LLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTMEKLKNARYKDGR 443


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 225/432 (52%), Gaps = 13/432 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEK--FRNAGTL-AFCFFKWAEKQQNYEHSVRAYHSMIES 106
           L  +L  +G+ +S ++++ VL++  F +   L A  FF +   ++ + HS  +  +M+  
Sbjct: 59  LKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTMLYI 118

Query: 107 LAKIRQYQIMWD-LVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           L + R++  +WD L++  R  R ++   T  +++ + A+V  V   V +F   ++     
Sbjct: 119 LGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMTVESFWKFKRLVPVF 178

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           + + FN LL  LC+ K++  A+ ++  +K  F P+ +T++ILL GW        A   + 
Sbjct: 179 DTSCFNALLRTLCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSSE---EAELFYE 235

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM + G  PDIVTY  ++DV CK   +++A G+V  M      P    Y+ ++   G+  
Sbjct: 236 EMKELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVG 295

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           + + A D   EM+++G   DVA YNA+I  +C A +    Y ++ +M SKG++PN+ + N
Sbjct: 296 QPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPNATSYN 355

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           +         +   ++  + RM+   C  +  +   +IK+F +  ++E A ++W  M  K
Sbjct: 356 LFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEKVEMALQLWNDMVEK 415

Query: 404 RFIPSMHTFSVLINGLCDKG--IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            F   +    VL+  LCD G  + ++ C L   M+EKG +PS  +F +++ L+    + D
Sbjct: 416 GFGSYILVSDVLLGMLCDMGKLVEAEKCFL--QMVEKGHKPSNVSFRRIKVLMELANKHD 473

Query: 462 VLKFLQEKMNLL 473
            ++ L EKM + 
Sbjct: 474 AIRNLSEKMAIF 485


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 33  DAAKSISKIMLSSPKVVLDTA-----LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           D A+ +  ++ ++     D A     L++ G   S  +V  VL + RN+   A   F+WA
Sbjct: 76  DVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLARLRNSCAAAHAAFRWA 135

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
             Q  Y     AYHSM+  LAK R++     L++ MR   + +     +++R+Y   + V
Sbjct: 136 SAQPGYAPGRHAYHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDV 195

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
             AV  F  +   G    +A F+GLL+ALC+ KNV+ A+ +    +  F  ++K+++++L
Sbjct: 196 AGAVAAFRALPSLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNVVL 255

Query: 208 EGWGKDPNLPR----AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            GW    N+ R    A+  +  M   G   D+V+YG M+    KAG +D  + +   M  
Sbjct: 256 NGWC---NMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKE 312

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P   IY+ +V+       + +A      ME+ G+  D A +N+LI   CKA + + 
Sbjct: 313 AGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQE 372

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             ++L DM  +G++P+ RT + +L+  + R    E + +  +M +L C+ + DT+ M+I+
Sbjct: 373 ARKMLDDMLGRGLSPSVRTFHALLD--VARSPI-EVFDLLDKMKELQCDPEMDTFIMLIR 429

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC+  + +   K+W  M      P    + VLI+GL   G + +S    E+M  KG  P
Sbjct: 430 KFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPP 489

Query: 443 SGETFGKLRKLLIKEGRE 460
             +T   ++  L   GRE
Sbjct: 490 EKKTEEMIQAWL--SGRE 505


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 192/336 (57%), Gaps = 1/336 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+  + +S  +V  VLE+F++A   AF FF WA ++  + H+ R Y++M+  L +
Sbjct: 177 MEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGR 236

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M  K +L +ETF I ++ +A  ++ ++AV  F +M++Y     +   
Sbjct: 237 TRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTI 296

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL  L ++K  ++AQ +F+ ++DRF P+ +TY++LL GW +  NL  A   + EM+D 
Sbjct: 297 NCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDK 356

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDI+ +  M++ L K  +  +A+ + + M +    P    Y++L+     + ++++A
Sbjct: 357 GFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEA 416

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V+ F EM  +G   D A+Y  LI  F    K   VY +LK+M  KG   + RT N ++  
Sbjct: 417 VEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKL 476

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
           +  R   D+A R++++MI+   ++   TY MM+K +
Sbjct: 477 MTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSY 512



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 138/296 (46%), Gaps = 2/296 (0%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           QK G T N   +N ++S L +++       +   M ++ +   +T+SI ++ +       
Sbjct: 216 QKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERK 275

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A  +F  M     +  + T   ++D L +A    EA  + + ++     P    Y+VL+
Sbjct: 276 KAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFT-PNLRTYTVLL 334

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +     + +A  T+ EM   G   D+  ++ ++    K  K  +  ++ + M +KG +
Sbjct: 335 NGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPS 394

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN RT  I++  L  + +  EA   F  M+   C+ DA  YT +I  F    +++K + +
Sbjct: 395 PNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYAL 454

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
            K MK K       T++ LI  + ++ +  D+  + + MI+ GI+ +  T+  + K
Sbjct: 455 LKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMK 510



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 108/271 (39%), Gaps = 51/271 (18%)

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           V++G +P+ V+       +C+   +DE   + ++M++ +      +   LV   GV  R 
Sbjct: 151 VNSGADPEEVSR------VCRV--IDELFALDRNMEAVLDECNVDLSHALV--VGVLERF 200

Query: 287 EDAVDTFLEM-----EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA---- 337
           + A            +K G   +   YNA++    +  +F+++  +L +M  KG+     
Sbjct: 201 KHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMET 260

Query: 338 ------------------------------PNSRTCNIILNGLIGRGE-TDEAYRVFRRM 366
                                             T N +L+ L GR +   EA  +F ++
Sbjct: 261 FSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNL-GRAKLGKEAQALFEKL 319

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 +  TYT+++  +C+   L +A + W  M  K F P +     ++ GL      S
Sbjct: 320 EDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKS 379

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           D+  L E M  KG  P+  T+  L + L K+
Sbjct: 380 DAIKLFEVMKAKGPSPNVRTYTILIRDLCKQ 410


>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Brachypodium distachyon]
          Length = 548

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 211/430 (49%), Gaps = 10/430 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA-- 108
           + ALD  G  ++  +V DV+ + R    LAF FF WA +Q NYEH   AY+ +I++L+  
Sbjct: 93  EAALDALGAELTTPLVSDVMHRLRYEEKLAFRFFAWASQQDNYEHDQAAYNEVIDTLSGT 152

Query: 109 --KIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             K RQ+ ++ D+++ M+  R   + VE    I+R Y                 +     
Sbjct: 153 RYKARQFGVLCDVLDHMKRHRTRSVPVEDLLAILRAYTEKHLTNLRKLAKKRRVRMRTPP 212

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
              A N LL A CK   VR+A+ +F  +K +   +++TY+IL  GW +  +  +A ++  
Sbjct: 213 ETDALNILLDAFCKCGMVREAETVFGRVKRKLQGNAETYNILFFGWCRARDPKKAMKVLE 272

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEA---LGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           EM+     P+  TY   +D  C AG V EA      +++  S++  PT+  YSV++    
Sbjct: 273 EMILMKHAPESFTYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPTAKAYSVMIVALV 332

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +R++D  +   +M K G + DV+ +  LI   C  +K    Y VL++M   G  P+  
Sbjct: 333 KADRMDDCFELISDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKAGFPPDIV 392

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N  L  L    + D+A ++  RMI+  CE    TY M++ MF Q  E  +A  +W  M
Sbjct: 393 TYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHTYNMLMVMFFQMREPHRALDIWLEM 452

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             +    ++ T+ ++I+GL D G   D+  LL+++I   ++ S + F  +   L   G  
Sbjct: 453 DKRGCRRAVDTYEIMIDGLFDCGRTEDATNLLDEVINHDMKLSYKKFDAIMLQLSAVGNL 512

Query: 461 DVLKFLQEKM 470
             +  L E M
Sbjct: 513 GAIHRLSEHM 522



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 4/241 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVT---QNLAAFNGLLSALCKSKNVRKAQE-I 188
           T+   +  +     V EA   F  M+  G +       A++ ++ AL K+  +    E I
Sbjct: 285 TYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPTAKAYSVMIVALVKADRMDDCFELI 344

Query: 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D +K   +PD  T+  L+EG      +  A  +  EM   G  PDIVTY   ++VLC  
Sbjct: 345 SDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKAGFPPDIVTYNCFLEVLCNL 404

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            + D+AL + + M    C P+   Y++L+  +        A+D +LEM+K G    V  Y
Sbjct: 405 QKADDALKLCERMIEAHCEPSVHTYNMLMVMFFQMREPHRALDIWLEMDKRGCRRAVDTY 464

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             +I       + ++   +L ++ +  +  + +  + I+  L   G     +R+   M K
Sbjct: 465 EIMIDGLFDCGRTEDATNLLDEVINHDMKLSYKKFDAIMLQLSAVGNLGAIHRLSEHMRK 524

Query: 369 L 369
            
Sbjct: 525 F 525


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 220/436 (50%), Gaps = 14/436 (3%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMI 104
           SP   L T L Q+GI+ +P ++  V + F ++  L    + WA  Q  ++     + S+I
Sbjct: 86  SPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVI 145

Query: 105 ESLAKIRQYQIMWDLV------NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            +LAK++++   W LV      +    +++++V TF II+R+YAR    + A+ TF   +
Sbjct: 146 NALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAK 205

Query: 159 -KYGVTQN---LAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWG 211
            K  +  +   ++ F  L+ +LCK  + R+A E     K+    ++P  + Y+I+L GW 
Sbjct: 206 DKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWF 265

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   L  A  ++ EM +    P +VTYG +V+  C+  RV++AL +V  M     +P + 
Sbjct: 266 RARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAI 325

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           +Y+ ++       R ++A+          I   ++ YN+L+  FCKA   +   ++LK M
Sbjct: 326 VYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKM 385

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGEL 390
            S+G  P   T N         G+ DE   ++ +MI+     D  TY +++KM C+  +L
Sbjct: 386 ISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKL 445

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E A +V   M+ K +   + T ++L + LC    + ++    EDMI +GI P   TF KL
Sbjct: 446 ELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKL 505

Query: 451 RKLLIKEGREDVLKFL 466
              L K+G  ++ + L
Sbjct: 506 NVELKKQGMNEMARKL 521



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/259 (18%), Positives = 108/259 (41%), Gaps = 13/259 (5%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +P++     +   +  TG  P       + D    + ++  +L  + +++    +P S +
Sbjct: 82  NPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSL-YLWALNQPGFKPDSSL 140

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGI-----LADVAMYNALIGAFCKANKFKNVYRV 327
           +  +++        +DA    L+  +        L  V  +  +I  + +A   K   R 
Sbjct: 141 FDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRT 200

Query: 328 LKDMNSKGVAPNSRT----CNIILNGLIGRGETDEA--YRVFRRMIKLCEADA-DTYTMM 380
            +    K    +S +      I+++ L   G   EA  Y + R+   L    +   Y +M
Sbjct: 201 FEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIM 260

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  + +  +L+ A ++W+ MK +   PS+ T+  L+ G C    V  +  ++ +M ++GI
Sbjct: 261 LNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGI 320

Query: 441 RPSGETFGKLRKLLIKEGR 459
           +P+   +  +   L + GR
Sbjct: 321 KPNAIVYNPIIDALAEAGR 339


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 244/469 (52%), Gaps = 14/469 (2%)

Query: 12  ISGCISFLRRYNSSEPSTEALDAAKSISKIML-SSPKVVLDTALDQSGIRVSPEIVEDVL 70
           I   I F   ++SS  +       +++ +I+  SS    +  +L+ S + +S E+++ VL
Sbjct: 19  IPLSIFFSHPFSSSTDNQSLHQNIETVFRIITTSSSSTDMKHSLESSRVFLSNELIDGVL 78

Query: 71  EK--FRNAGTL-AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK- 126
           ++  F +   L A  FF +  K++ + H+  +  +M+  L + R++  +WD++  ++ K 
Sbjct: 79  KRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFKD 138

Query: 127 -RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
             ++++ T  +++ + A+V  V + V +F   +K+    ++  FN LL  LC+ K++  A
Sbjct: 139 PSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDA 198

Query: 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           + ++  +K  F P+ +T++ILL GW        A   F EM++ G  PD+V+Y  +VDV 
Sbjct: 199 RNVYHGLKSMFRPNLQTFNILLSGWKSSE---EAEGFFDEMIEMGVKPDVVSYNCLVDVY 255

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK   +D+A  +V  M           Y+ ++   G+  + + A +   EM++ G   DV
Sbjct: 256 CKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDV 315

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           A YNA I  FC A +    + +L +M +KG++PN+ T N+         +   A+ ++RR
Sbjct: 316 AAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRR 375

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG- 423
           M+   C  +  +   ++++F +  + E A ++W  M  K F   +     L + LCD G 
Sbjct: 376 MMDTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDMIQKGFGSYILVSEELFDLLCDLGK 435

Query: 424 -IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            I ++SC L   M++KG +PS  +F +++ L+    + + L+ L +KM+
Sbjct: 436 LIEAESCFL--QMVDKGHKPSYTSFKRIKVLMELANKHEALQNLSKKMD 482


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 233/442 (52%), Gaps = 13/442 (2%)

Query: 41  IMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK--FRNAGTL-AFCFFKWAEKQQNYEHSV 97
           I  SS    +  +L+ S + +S E+++ VL++  F +   L A  FF +  K++ + H+ 
Sbjct: 49  ITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTS 108

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFN 155
            +  +M+  L + R++  +WD++  ++ K   ++++ T  +++ + A+V  V + V +F 
Sbjct: 109 FSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFR 168

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
             +K+    ++  FN LL  LC+ K++  A+ ++  +K  F P+ +T++ILL GW     
Sbjct: 169 KFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSSE- 227

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A   F EM++ G  PD+V+Y  +VDV CK   +D+A  +V  M           Y+ 
Sbjct: 228 --EAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTS 285

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++   G+  + + A +   EM++ G   DVA YNA I  FC A +    + +L +M +KG
Sbjct: 286 IIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKG 345

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           ++PN+ T N+         +   A+ ++RRM+   C  +  +   ++++F +  + E A 
Sbjct: 346 LSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEMAL 405

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKG--IVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           ++W  M  K F   +     L + LCD G  I ++SC L   M++KG +PS  +F +++ 
Sbjct: 406 ELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFL--QMVDKGHKPSYTSFKRIKV 463

Query: 453 LLIKEGREDVLKFLQEKMNLLV 474
           L+    + + L+ L +KM+ ++
Sbjct: 464 LMELANKHEALQNLSKKMDDII 485


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 226/444 (50%), Gaps = 19/444 (4%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           P   L++ALD++GI  S E+V  + ++  ++  L    FKWAE +  +  S   + S++ 
Sbjct: 84  PGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVN 143

Query: 106 SLAKIRQYQIMWDLV-NAMRT---KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY- 160
           SL K R+++I W LV + +R+     +++ +TF +++R+YAR   V++A+  F   + Y 
Sbjct: 144 SLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYE 203

Query: 161 ---GVTQNLAAFNGLLSALCKSKNVRKA----QEIFDCMKDRFIPDSKTYSILLEGWGKD 213
                   L     LL ALCK  +VR+A    + I   M   ++P  + ++ILL GW + 
Sbjct: 204 PVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRS 263

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L +A +++ EM      P +VTYG +++  C+  RV  A+ +++ M          ++
Sbjct: 264 RKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVF 323

Query: 274 SVLVHTYGVENRIEDAV---DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           + ++   G   R+ +A+   + F   E       +  YN+L+  FCKA       ++LK 
Sbjct: 324 NPIIDGLGEAGRLSEALGMMERFFVCESG---PTIVTYNSLVKNFCKAGDLPGASKILKM 380

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGE 389
           M ++GV P + T N          +T+E   ++ ++I+   + D  TY +++KM C+ G+
Sbjct: 381 MMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGK 440

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           L  A +V K MK +   P + T ++LI+ LC   ++ ++    ++ + +GI P   TF  
Sbjct: 441 LSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKM 500

Query: 450 LRKLLIKEGREDVLKFLQEKMNLL 473
           +   L  +G  D+ K L   M+ L
Sbjct: 501 IDNGLRSKGMSDMAKRLSSLMSSL 524



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 127/290 (43%), Gaps = 14/290 (4%)

Query: 91  QNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
            N+  SVR ++ ++       K++Q + +W+ + AM  K    V T+  ++  Y R+++V
Sbjct: 244 SNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKP--TVVTYGTLIEGYCRMRRV 301

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-----PDSKT 202
           + A+     M+   +  N   FN ++  L ++  + +A      M +RF      P   T
Sbjct: 302 QIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEAL----GMMERFFVCESGPTIVT 357

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L++ + K  +LP A +I + M+  G +P   TY        K  + +E + +   + 
Sbjct: 358 YNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLI 417

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P    Y +++     + ++  A+    EM+  GI  D+     LI   C+    +
Sbjct: 418 EAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLE 477

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372
             +    +   +G+ P   T  +I NGL  +G +D A R+   M  L  +
Sbjct: 478 EAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKRLSSLMSSLPHS 527



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           ++D T   P+  +   L         +  +V  + EM K G     +++++++ + CKA 
Sbjct: 91  ALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEM-KPGFTLSPSLFDSVVNSLCKAR 149

Query: 320 KFKNVY-----RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF---RRMIKLCE 371
           +F+  +     RV  D  S  V+ +  T  +++      G   +A R F   R    +C+
Sbjct: 150 EFEIAWSLVFDRVRSDEGSNLVSAD--TFIVLIRRYARAGMVQQAIRAFEFARSYEPVCK 207

Query: 372 ADADTYTM--MIKMFCQGGELEKAFKVWKYMKLKR--------FIPSMHTFSVLINGLCD 421
           +  +   +  ++   C+ G + +A      M L+R        ++PS+  F++L+NG   
Sbjct: 208 SATELRLLEVLLDALCKEGHVREA-----SMYLERIGGTMDSNWVPSVRIFNILLNGWFR 262

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFG-------KLRKLLIKEGREDVLKFLQEKMNLLV 474
              +  +  L E+M    ++P+  T+G       ++R++ I     + +K  + ++N +V
Sbjct: 263 SRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMV 322

Query: 475 KEPLCD 480
             P+ D
Sbjct: 323 FNPIID 328


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 224/432 (51%), Gaps = 13/432 (3%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA 80
           R+  S P+T      +++ K     P   L  ALDQ G  ++ ++V DVL + R+    A
Sbjct: 29  RFVHSCPAT----FIQNLLKFRRDKPTEQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPA 84

Query: 81  FCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIM 138
             FF WA K    Y+ S    + +++ L K++++Q +  +++ M + + +L+   F  ++
Sbjct: 85  HVFFNWASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLV 144

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFI 197
           R++    KV+EA+  F   +++G+  N  AF  LL  LC+ K+V  A+ +F + +K    
Sbjct: 145 RRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLR 204

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
            D K ++++L GW    N   A+ ++R++V + C PDI TY   +  L K G++  AL +
Sbjct: 205 ADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKL 264

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + M     +P   I + ++     + RI +A++ F +M + G   +VA YN+LI   CK
Sbjct: 265 FRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCK 324

Query: 318 ANKFKNVYRVLKDMNSK--GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADA 374
             + K VY ++ +M  K     PN+ T   +L  L    E  E  RV  RM +  C  + 
Sbjct: 325 IQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSL---KEPGEVCRVLERMERNGCGMND 381

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           D Y M+++++ +  + +   K W+ M+   + P   +++++I+   +KG V D+   LE+
Sbjct: 382 DVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEE 441

Query: 435 MIEKGIRPSGET 446
           MI KG+ P   T
Sbjct: 442 MISKGMVPERRT 453



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 1/229 (0%)

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           TG  P       +VD+L K  R  E   ++  M          +++ LV  +   +++++
Sbjct: 96  TGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDE 155

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+  F   ++ G+  +   +  L+   C+    ++   +  +   KG+  + +  N+ILN
Sbjct: 156 AIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILN 215

Query: 349 GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           G    G + EA RV+R ++   C+ D  TY   IK   + G+L  A K+++ M  K   P
Sbjct: 216 GWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKP 275

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            +   + +I+ LC K  + ++  +  DM E+G  P+  T+  L K + K
Sbjct: 276 DVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCK 324


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 242/475 (50%), Gaps = 26/475 (5%)

Query: 22  YNSSEPSTEALDAAKS----ISKIMLSS---PKVVLDTALDQSGIRVSPEIVEDVLEKFR 74
           ++S+      LD +K+    IS ++ ++   P   L++ALD++GI  S ++V+ + ++  
Sbjct: 53  HDSTPHQITVLDFSKTDLSTISNLLENTNVVPGSSLESALDETGIEPSLQLVQALFDRLS 112

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRT---KRMLN 130
           ++  L    FKWAE +  +  S   + S+I SL K R+++I W LV + +R+     +++
Sbjct: 113 SSPMLLHSVFKWAEMKPGFTLSPSLFDSVINSLCKAREFEIAWSLVFDRVRSDEGSNLVS 172

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKY----GVTQNLAAFNGLLSALCKSKNVRKAQ 186
            +TF +++R+YAR   V++A+  F   + Y         L     LL ALCK   VR+A 
Sbjct: 173 ADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSASELKLLEVLLDALCKEGYVREAS 232

Query: 187 EIFD----CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
              +     M   ++P  + ++ILL GW +   L +A +++ EM      P +VTYG ++
Sbjct: 233 VYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLI 292

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV---DTFLEMEKN 299
           +  C+  RV+ A+ I++ M       T  +++ ++   G   R+ +A+   + F   E  
Sbjct: 293 EGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEALGMMERFFVCESG 352

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
                +  YN+L+  FCKA       ++LK M ++GV P + T N          +T+E 
Sbjct: 353 ---PTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSKHNKTEEG 409

Query: 360 YRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             ++ ++I+   + D  TY +++KM C+ G+L  A +V K MK +   P + T ++L++ 
Sbjct: 410 MNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDPDLLTTTMLMHL 469

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           LC   ++ ++    ++ + +GI P   TF  +   L  +G  D+ K L   M+ L
Sbjct: 470 LCRLDMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMTDMAKRLSSLMSSL 524



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 108/241 (44%), Gaps = 23/241 (9%)

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           ++D T   P+  +   L         +  +V  + EM K G     ++++++I + CKA 
Sbjct: 91  ALDETGIEPSLQLVQALFDRLSSSPMLLHSVFKWAEM-KPGFTLSPSLFDSVINSLCKAR 149

Query: 320 KFKNVY-----RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF---RRMIKLCE 371
           +F+  +     RV  D  S  V+ +  T  +++      G   +A R F   R    +C+
Sbjct: 150 EFEIAWSLVFDRVRSDEGSNLVSAD--TFIVLIRRYARAGMVQQAIRAFEFARSYEPVCK 207

Query: 372 ADADTYTM--MIKMFCQGGELEKA---FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           + ++   +  ++   C+ G + +A    +  + M    ++PS+  F++L+NG      + 
Sbjct: 208 SASELKLLEVLLDALCKEGYVREASVYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLK 267

Query: 427 DSCVLLEDMIEKGIRPSGETFG-------KLRKLLIKEGREDVLKFLQEKMNLLVKEPLC 479
            +  L E+M    ++P+  T+G       ++R++ I     + +K  + ++  +V  P+ 
Sbjct: 268 QAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPII 327

Query: 480 D 480
           D
Sbjct: 328 D 328


>gi|226495005|ref|NP_001148062.1| GTP binding protein [Zea mays]
 gi|195615570|gb|ACG29615.1| GTP binding protein [Zea mays]
          Length = 535

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 218/426 (51%), Gaps = 18/426 (4%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           +++ L+  KS S     +    L   L Q  + +  +I+  VL+K R+   +A  FF WA
Sbjct: 80  ASQVLNVLKSTS-----ADNADLSGVLHQFMVHMDEDIILMVLQKQRSNWQVALAFFNWA 134

Query: 88  EKQQNYEHSVRAYHSMIESLA---KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144
                Y H  RAY  M++ L    K+R  + ++D +   R + ++  + F +++ +YA  
Sbjct: 135 ATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGA 194

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204
            KV+EA+  F + + YG   +L  F  LL +LC+ K+V +A+ +F   KD F   +K+++
Sbjct: 195 HKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVTKSWN 254

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+L GW    +L  A+ I+ +++ +    D+ T+G  ++ L K GR+  A+ + K M   
Sbjct: 255 IILNGWCVKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQMWEK 314

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P   I + ++     + +I +A++ F EM      ADVA YN LI   CK  + + V
Sbjct: 315 GINPDVAICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKRMEKV 374

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----CEADADTYTMM 380
           Y +L DM +KG +PN+RT + IL        T++   V   M ++    C+ D+D Y ++
Sbjct: 375 YELLDDMEAKGCSPNNRTYSYILK------TTEKPKDVIALMQRMERSGCKLDSDMYNLI 428

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           + ++ +    +   ++W  M+ +   P   +F+++++GL  +G + ++      M  +G+
Sbjct: 429 LNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTMKSRGM 488

Query: 441 RPSGET 446
            P   T
Sbjct: 489 IPEPRT 494



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR-RMIKL 369
           ++G   K    + ++  + +   + V  N +   ++LN   G  +  EA  VF  R    
Sbjct: 153 ILGRMKKVRHMRQLFDEIPEERRQVVVTN-KMFAVLLNRYAGAHKVQEAIEVFYLRKDYG 211

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            E D   + +++   C+   +E+A  +++  K   F     ++++++NG C KG + D+ 
Sbjct: 212 FELDLVGFQILLMSLCRYKHVEEAEALFREKK-DEFPHVTKSWNIILNGWCVKGSLRDAQ 270

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +  D+I   +     TFG     L K GR
Sbjct: 271 RIWNDIIASKVERDLFTFGTFINALAKNGR 300


>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
 gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
 gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
          Length = 530

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 33  DAAKSISKIMLSSPKVVLDTA-----LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           D A+ +  ++ ++     D A     L++ G   S  +V  VL++ RN+   A   F+WA
Sbjct: 78  DVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVVAVLDRLRNSCAAAHAAFRWA 137

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
             Q  Y     A HSM+  LAK R++     L++ MR   + +     +++R+Y   + V
Sbjct: 138 SAQPGYAPGRHACHSMLAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDV 197

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
             AV  F  +   G    +A F+GLL+ALC+ KNV+ A+ +    +  F  ++K+++++L
Sbjct: 198 AGAVAAFRALPNLGFRPGVAEFHGLLTALCRYKNVQDAEHLLLSSEKEFPFETKSFNVVL 257

Query: 208 EGWGKDPNLPR----AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            GW    N+ R    A+  +  M   G   D+V+YG M+    KAG +D  + +   M  
Sbjct: 258 NGWC---NMVRSVREAKRFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKE 314

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P   IY+ +V+       + +A      ME+ G+  D A +N+LI   CKA + + 
Sbjct: 315 AGVIPDRKIYNAVVYALAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQE 374

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             ++L DM  +G++P+ RT + +L+  + R    E + +  +M +L C+ + DT+ M+I+
Sbjct: 375 ARKMLDDMLGRGLSPSVRTFHALLD--VARSPI-EVFDLLDKMKELQCDPEMDTFIMLIR 431

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC+  + +   K+W  M      P    + VLI+GL   G + +S    E+M  KG  P
Sbjct: 432 KFCRWRQHDSVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMKAKGFPP 491

Query: 443 SGETFGKLRKLLIKEGRE 460
             +T   ++  L   GRE
Sbjct: 492 EKKTEEMIQAWL--SGRE 507


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 232/452 (51%), Gaps = 9/452 (1%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG---TLAFCFF 84
           S +  D  K    +  +S    L  +L  SG+ +S ++++ VL++ R +    +    FF
Sbjct: 28  SNQNDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSNDVIDQVLKRVRFSHGNPSQTLEFF 87

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYA 142
           ++  +++ + HS  +  +M+  L + R +  +W+L+   R K    +   T  +++ + A
Sbjct: 88  RYTGRRKGFYHSSFSLDTMLYILGRSRMFGQVWELLIEARRKDQTAITARTVMVVLGRIA 147

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
           +V  V + V +F   +K     +   FN LL  LC+ K++  A+ ++  +K RF P+ +T
Sbjct: 148 KVCSVRQTVESFRKFRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHRFRPNLQT 207

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           ++ILL GW K P    A   F+EM + G  PD+VTY  ++DV CK   +++A  ++  M 
Sbjct: 208 FNILLSGW-KTPE--DADLFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKMLDEMR 264

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P    Y+ ++   G+  + + A +   EM++ G   D A YNA I  FC A +  
Sbjct: 265 DQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLG 324

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMI 381
           + + ++++M +KG++PN+ T N+         +   ++ +++R M++ C  +  +   +I
Sbjct: 325 DAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMMVEGCLPNTQSCMFLI 384

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           ++F +  ++E A + W  M  K F        VL + LCD G + ++     +M+EKG +
Sbjct: 385 RLFRRHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCFLEMVEKGQK 444

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           PS  +F +++ L+    R + L+ L +KM + 
Sbjct: 445 PSHVSFRRIKVLMELANRHEALQSLMQKMAMF 476


>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 231/468 (49%), Gaps = 11/468 (2%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIR 60
           ++K+  + NK  +  I     + S   +      A+++  ++  +    +D AL  SGI 
Sbjct: 20  LVKIQKTLNKKFNPKIPKPNEFPSHLDTPNVSSTARTLCNLLTRTSPQDIDNALSSSGIH 79

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
            S E V +VL+   N  + A  FF+WA + +  +HS  A++ M++ L + + ++ MWD V
Sbjct: 80  PSEECVHEVLKLSYNYPSSAIKFFRWAGRLR--KHSAHAWNLMVDLLGRNQLFEPMWDAV 137

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
             M+ + +L++ TF  + + Y    +V EAV +F+VM KY + +N+ A N LLSA+C+ +
Sbjct: 138 RTMKQEGVLSLPTFVSVFQSYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREE 197

Query: 181 NVRKA------QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNP 233
           N          +++    + +   D  +Y+ILLEGW K+ N  +A+  F EMV   G + 
Sbjct: 198 NQTSVGVEFLEKKVTGKDEGKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQ 257

Query: 234 D-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           D +  Y   +  L +A + DE +G +K M    C P    ++  +      N    A+  
Sbjct: 258 DNVAAYDAFLMTLLRALQFDEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPL 317

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           +  M  +G+L ++ MYNA+IG  C  ++  + +R+L +M   G  P+S T N+I   L+ 
Sbjct: 318 WDVMVVSGLLPNLIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVK 377

Query: 353 RGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
             +  E  R F  MIK           + I+M     + + A ++W YM   R      +
Sbjct: 378 NKKVRETERFFAEMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVS 437

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            ++++ GLC    +S+     E+M++K I     T  KL++   KE R
Sbjct: 438 ANMVLIGLCKLKRLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKESR 485


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 217/421 (51%), Gaps = 7/421 (1%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
             EP  E     +++ K    SP   ++ AL Q    V+ +++  VL++ R+    A  F
Sbjct: 41  QQEPPGELALKVQNVLKNYRDSPTRKIELALTQCNPTVTEDLILKVLKRHRSDWKPALIF 100

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYA 142
           F W  K         AY+ +++ L K+R++  +  +++ M  +  ++N ET+ +++ +YA
Sbjct: 101 FNWVSKGGKVLMGSGAYNEILDILGKMRRFDELSQVLDIMSKREGLVNEETYRVLVNRYA 160

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
              KVEEA+  FN  +  G+  +L +F  LL  LC+ K+V+ A+ +       F  D KT
Sbjct: 161 AAHKVEEAIEIFNTRRDIGLEIDLVSFQNLLMFLCRYKHVQIAESLLYSKGKDFGMDIKT 220

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            +I+L GW    N+  A+  +++++ + C PD+ TYG  +  L K G++  AL I ++M 
Sbjct: 221 MNIVLNGWCVLGNVHEAKRFWKDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMW 280

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
              C+P   I + ++     +NR+ +A++ F EM + G L + A YN+LI  F +  + +
Sbjct: 281 EKQCKPDVVICNCIIDALCFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRME 340

Query: 323 NVYRVLKDM-NSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTM 379
            VY +L +M + KG   P+  T N +L  L    + +E   V  RM +  C    DTY +
Sbjct: 341 KVYELLDEMLDKKGSCMPDHITFNYLLKAL---KKPEELPLVLERMERNGCMISTDTYNL 397

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +++++      E+    W  M+     P   +++++I+ L +KG ++D+     +M  KG
Sbjct: 398 ILRLYADWDCEERVGDTWNEMEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKG 457

Query: 440 I 440
           +
Sbjct: 458 M 458



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y  ++D+L K  R DE   ++  M           Y VLV+ Y   +++E+A++ F   
Sbjct: 116 AYNEILDILGKMRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTR 175

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG--VAPNSRTCNIILNGLIGRG 354
              G+  D+  +  L+   C+   +K+V      + SKG     + +T NI+LNG    G
Sbjct: 176 RDIGLEIDLVSFQNLLMFLCR---YKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLG 232

Query: 355 ETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
              EA R ++ +I   C+ D  TY   IK   + G+L  A K+++ M  K+  P +   +
Sbjct: 233 NVHEAKRFWKDIIGSKCKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICN 292

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            +I+ LC K  V ++  +  +M ++G  P+G T+  L K   +  R E V + L E ++
Sbjct: 293 CIIDALCFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLD 351



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 6/213 (2%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+   ++   +  K+  A+  +  M +     ++   N ++ ALC    V +A E+F  M
Sbjct: 255 TYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNRVPEALEVFREM 314

Query: 193 KDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT--GCNPDIVTYGIMVDVLCKAG 249
             +  +P+  TY+ L++ + +   + +  E+  EM+D    C PD +T+  ++  L K  
Sbjct: 315 SQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPDHITFNYLLKALKKP- 373

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
             +E   +++ M+   C  ++  Y++++  Y   +  E   DT+ EMEK G+  D   Y 
Sbjct: 374 --EELPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDTWNEMEKLGLGPDRRSYT 431

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
            +I    +  +  +      +M SKG+    RT
Sbjct: 432 IMIHWLYEKGRINDALHYFGEMTSKGMVSEPRT 464


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 213/433 (49%), Gaps = 12/433 (2%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL+++GI+    +++ +   F  +    F  F+WA KQ  +E S+  ++SMI+ LAK
Sbjct: 90  LEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAK 149

Query: 110 IRQYQIMW----DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
            R +   W    D +       +++  TF +++R+YAR      A+ TF         ++
Sbjct: 150 SRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRD 209

Query: 166 ----LAAFNGLLSALCKSKNVRKAQEIFD---CMKDRFIPDSKTYSILLEGWGKDPNLPR 218
                + F  LL +LCK  +VR A E FD    +   ++P  + Y++LL GW +   L R
Sbjct: 210 RDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKR 269

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A +++R M      P +VTYG +V+  C+  R ++A+ +V  M      P   +Y+ ++ 
Sbjct: 270 AEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIID 329

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
           +     R ++A+        +     ++ YN+L+  FCKA       +VLK M S+G  P
Sbjct: 330 SLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDP 389

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVW 397
              T N         G+T+E   ++ +MI+     D  TY ++IKM C+   L+ A +V 
Sbjct: 390 TLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVS 449

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           K M+ +     + T ++L++ LC    + ++    EDMI +GI P   TF ++   L K 
Sbjct: 450 KEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKR 509

Query: 458 GREDVLKFLQEKM 470
           G  ++ + L + M
Sbjct: 510 GLTEMARKLCDMM 522


>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 203/430 (47%), Gaps = 10/430 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA-- 108
           + ALD  G  ++  +V DVL + R    LAF FF WA +Q  Y H    Y+ +I+ L+  
Sbjct: 96  EAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYSHEPTTYNDIIDILSGT 155

Query: 109 --KIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             K RQ+ ++ ++++ M+    R + VE    I+R Y                 +     
Sbjct: 156 RYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLEILRAYTEKHLTHMRKLAKKRRVRMRTPP 215

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
              A N LL A CK   V++A+ +F  +K + + +++TYS L  GW +  +  +A ++  
Sbjct: 216 ETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLE 275

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS---TVCRPTSFIYSVLVHTYG 281
           EM+     P+  TY   ++  C AG V EA  + + M +   TV  PT+  YS+++    
Sbjct: 276 EMIQMKHTPESFTYVAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYSIMIVALA 335

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +R+E+  +   +M   G + DV  Y  LI   C   +    YRVL +M   G  P+  
Sbjct: 336 KADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIV 395

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N  LN L      D+A  +  RMI+  CE    TY M++ MF + GE  +A  +W  M
Sbjct: 396 TYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWLEM 455

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             +    ++ T+ ++I GL D G    +  LL+++I + ++ S + F  +   L   G  
Sbjct: 456 DKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLSAVGNL 515

Query: 461 DVLKFLQEKM 470
             +  L E M
Sbjct: 516 GAIHRLSEHM 525



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 31/378 (8%)

Query: 2   IKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKV----VLDTALDQS 57
           +K + SR+  + G +  LR Y      T     AK     M + P+     VL  A  + 
Sbjct: 172 MKRHGSRSVPVEGLLEILRAYTEKH-LTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKC 230

Query: 58  GIRVSPEIVEDVLEK--FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           G+    E V   +++    NA T +  FF W   +       +    ++E + +++    
Sbjct: 231 GMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDP-----KKAMKVLEEMIQMKHTPE 285

Query: 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT---QNLAAFNGL 172
            +  V A        +E+FC           V EA   F  M+  G+T        ++ +
Sbjct: 286 SFTYVAA--------IESFC-------SAGLVSEARELFEFMRTEGLTVSSPTAKTYSIM 330

Query: 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           + AL K+  + +  E+   M+    +PD  TY  L+EG      L  A  +  EM   G 
Sbjct: 331 IVALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGF 390

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PDIVTY   ++VLC     D+AL + + M    C P+   Y++L+  +        A+D
Sbjct: 391 PPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALD 450

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            +LEM+K G    +  Y  +I       + +    +L ++ ++ +  + +  + I+  L 
Sbjct: 451 IWLEMDKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLS 510

Query: 352 GRGETDEAYRVFRRMIKL 369
             G     +R+   M K 
Sbjct: 511 AVGNLGAIHRLSEHMRKF 528


>gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 225/441 (51%), Gaps = 11/441 (2%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           K + +I+   P   ++T LD++G+ VS   VE V++   +    A  FF+WA  +    H
Sbjct: 68  KLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSYSFPGPAVKFFRWAGFRLQDNH 127

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           S  +++ +++ L K   +  MWD + +M++K ++++ TF  +   Y    +V++A++TF 
Sbjct: 128 SPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATFASVFGSYVTAGRVKDAIFTFE 187

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           VM +YGV +++ A N LLSA+C+      A +     K+   PD+ T++ILLEGW K+ N
Sbjct: 188 VMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKNSIKPDADTFAILLEGWEKELN 247

Query: 216 LPRAREIFREMV-DTGCNP-DIVTYGIMVDVLCKAGRV--DEALGIVKSMDSTVCRP-TS 270
           L  +R+ F EMV + G +P +   Y   +  L   GR+  +E +  ++ M    C P   
Sbjct: 248 LVNSRQTFDEMVREIGWDPANTPAYDTFLCTLL-MGRIGFNEVIEFLEIMKEKRCCPGMR 306

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           F  + +     V +     +   + ME NG   D+ MYN +I  +C  N      R L +
Sbjct: 307 FFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYNLMISLYCYTNNTDIALRFLDE 366

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M   GV P+ +T N++   LI   +  EA  +F  MIK  C  +    +  +++F    +
Sbjct: 367 MVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKNECLPNQANCSAAVRVFMHSKD 426

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
              A KVWK M     +    T ++LI  LCD  +  ++    E MI KGI+ +  T  K
Sbjct: 427 PYMAIKVWKCMIENYELDLEETGNLLIVELCDLHMDPEAVKYAESMIGKGIKVTSPTMEK 486

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           L KL +K+ R++   F+ E++
Sbjct: 487 L-KLCLKQARKE---FVYERL 503


>gi|147789025|emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera]
          Length = 515

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 223/455 (49%), Gaps = 19/455 (4%)

Query: 25  SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPE------IVEDVLEKFRNA-- 76
           S PS E       +++I+   P    D  L  + I+  P+       VE+VL +   A  
Sbjct: 33  SHPSLEIKSEIDRVTRIINDHP--FPDHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHS 90

Query: 77  -GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVET 133
            G  AF FFK++ +   +  S  A+   +  L ++R +   W+L+  ++     +L +++
Sbjct: 91  NGFKAFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKS 150

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQK---YGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
             I++ + A+ Q  E+ +  F  M+K   +G       FN LL A C  + +++A+ +F 
Sbjct: 151 MSIMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFH 210

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
            M  RF P++KT +ILL G+ +  ++      + EM+  G  P+ VTY I +D  CK G 
Sbjct: 211 KMHSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNSVTYNIRIDAYCKKGC 270

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
             + L +++ M+   C PT    + L+H  GV   I  A + F E+    +  D+ +YNA
Sbjct: 271 FGDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIRNLQPDIGVYNA 330

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
            + +  ++ + ++   ++ +M  +G+  +S T + +  GL+     +    ++ +MI+  
Sbjct: 331 FMSSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRN 390

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
                 T  M++K FCQ  +L+ +  +W Y+  + + P  H   +L+ GLC  G V ++ 
Sbjct: 391 FVPKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAV 450

Query: 430 VLLEDMIEKGIRPSGE-TFGKLRKLLIKEGREDVL 463
              +  +E+G RP  E  F  L + L++ G  ++L
Sbjct: 451 ECAKQTLERG-RPMSEGVFRMLERYLVEAGEGEML 484


>gi|225460540|ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360
           [Vitis vinifera]
 gi|296081020|emb|CBI18524.3| unnamed protein product [Vitis vinifera]
          Length = 513

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 223/455 (49%), Gaps = 19/455 (4%)

Query: 25  SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPE------IVEDVLEKFRNA-- 76
           S PS E       +++I+   P    D  L  + I+  P+       VE+VL +   A  
Sbjct: 33  SHPSLEIKSEIDRVTRIINDHP--FPDHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHS 90

Query: 77  -GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVET 133
            G  AF FFK++ +   +  S  A+   +  L ++R +   W+L+  ++     +L +++
Sbjct: 91  NGFKAFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKS 150

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQK---YGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
             I++ + A+ Q  E+ +  F  M+K   +G       FN LL A C  + +++A+ +F 
Sbjct: 151 MSIMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFH 210

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
            M  RF P++KT +ILL G+ +  ++      + EM+  G  P+ VTY I +D  CK G 
Sbjct: 211 KMHSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNSVTYNIRIDAYCKKGC 270

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
             + L +++ M+   C PT    + L+H  GV   I  A + F E+    +  D+ +YNA
Sbjct: 271 FGDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIRNLQPDIGVYNA 330

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
            + +  ++ + ++   ++ +M  +G+  +S T + +  GL+     +    ++ +MI+  
Sbjct: 331 FMSSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRN 390

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
                 T  M++K FCQ  +L+ +  +W Y+  + + P  H   +L+ GLC  G V ++ 
Sbjct: 391 FVPKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAV 450

Query: 430 VLLEDMIEKGIRPSGE-TFGKLRKLLIKEGREDVL 463
              +  +E+G RP  E  F  L + L++ G  ++L
Sbjct: 451 ECAKQTLERG-RPMSEGVFRMLERYLVEAGEGEML 484


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 224/453 (49%), Gaps = 11/453 (2%)

Query: 24  SSEPSTEALDAAKSISKIM---LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA 80
           +  P  + LD   +I+K++     SP++    ALD    + S  +V  VL +F N    A
Sbjct: 83  TQSPKQDNLDELDAITKVLKKRYPSPELAA-LALDGLSFQPSSGLVSQVLNRFSNDWVPA 141

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIM 138
             FFKWA+ Q  Y HS    + M++ L K + +  M DLV  M    +  + +ET   ++
Sbjct: 142 LGFFKWAKSQTGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVI 201

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP 198
           R+ A+ +K E+A+  F  M K+GV ++ AA N L+ AL K  +V  A ++    K     
Sbjct: 202 RRLAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPL 261

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
            S ++++L+ GW +      AR+   +M + G  PD+ +Y   ++  C      +   ++
Sbjct: 262 SSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVL 321

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + M    C P +  Y+ ++   G   ++  A++ + +M+ +G +AD  +Y+ +I    KA
Sbjct: 322 EEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKA 381

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTY 377
            + K+   V +DM  +GV  +  T N +++        + A R+ + M    C+ +  TY
Sbjct: 382 GRLKDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTY 441

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             ++KM C+   ++    +  +M      P + T+S+L+N LC  G V+D+   LE+M+ 
Sbjct: 442 HPLLKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVL 501

Query: 438 KGIRPSGETF----GKLRKLLIKEGREDVLKFL 466
           KG  P   T     G+L  L + E +E V +++
Sbjct: 502 KGFTPKPSTLKGLAGELESLSMLEEKERVEEWM 534


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 214/450 (47%), Gaps = 44/450 (9%)

Query: 12  ISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTAL-----DQSGIRVSPEIV 66
           IS C    R  ++   + E  +AA+ I   +  + K  +   +     D SGIR++  IV
Sbjct: 26  ISSCTQSSRDVSNVNLTVEEEEAARLIKNSLSKARKWSVQDLIQCLGADCSGIRLTGNIV 85

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           + +L KF +    A  FF+WA+ + +Y H+  A + M++ L K+RQ   MW+L++ M  +
Sbjct: 86  DTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGR 145

Query: 127 RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
            ++ VET    +R+ A  ++ ++ V  F+ ++  G+ +N    N LL  LCK + +  A+
Sbjct: 146 GLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAR 205

Query: 187 EIFDCMKDRFIPDSKTYSILLEGW-------------------GKDP------------- 214
           E+F  +     PD+ T++I + GW                   G  P             
Sbjct: 206 EVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYC 265

Query: 215 ---NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
              N  R  E+   M   GC+P+++TY +++  L K  R +EAL +   M S+ C+P + 
Sbjct: 266 KQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTL 325

Query: 272 IYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            Y+ L++  G    + +A   F +EM  NG+  ++A YN +I  FC   +  +   VLK+
Sbjct: 326 FYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKE 385

Query: 331 MNSKGVAPNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQG 387
           M ++   P+ ++   +L   +  RG+ D    +   +        D DTYT++I   C+ 
Sbjct: 386 MEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRV 445

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           G+   A++++  M      P   T  +L++
Sbjct: 446 GDTVWAYQLFDEMVSSEIAPRSKTCVMLLD 475



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           MVD+L K  ++D+   ++  M          +   +    G   R +D V  F ++E  G
Sbjct: 122 MVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGAR-RWKDVVLLFDKLEDMG 180

Query: 301 ILADVAMYNALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +  +    N L+   CK  K    + V+ VL    S  + P++ T NI ++G       D
Sbjct: 181 LERNTETMNVLLDVLCKERKIEVAREVFAVL----SPHIPPDAYTFNIFVHGWCSIRRID 236

Query: 358 EAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA      M +        TYT +++ +C+     + ++V   M  +   P++ T+++++
Sbjct: 237 EAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIM 296

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             L       ++  +   M   G +P    +  L  LL K G 
Sbjct: 297 TSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGH 339


>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 202/430 (46%), Gaps = 10/430 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA-- 108
           + ALD  G  ++  +V DVL +      LAF FF WA +Q  Y H    Y+ +I+ L+  
Sbjct: 96  EAALDALGAELTTPLVADVLHRLLYEEKLAFRFFAWASQQDGYSHEPTTYNDIIDILSGT 155

Query: 109 --KIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             K RQ+ ++ ++++ M+    R + VE    I+R Y                 +     
Sbjct: 156 RYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLEILRAYTEKHLTHMRKLAKKRRVRMRTPP 215

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
              A N LL A CK   V++A+ +F  +K + + +++TYS L  GW +  +  +A ++  
Sbjct: 216 ETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLE 275

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS---TVCRPTSFIYSVLVHTYG 281
           EM+     P+  TY   ++  C AG V EA  + + M +   TV  PT+  YS+++    
Sbjct: 276 EMIQMKHTPESFTYVAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYSIMIVALA 335

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +R+E+  +   +M   G + DV  Y  LI   C   +    YRVL +M   G  P+  
Sbjct: 336 KADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIV 395

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N  LN L      D+A  +  RMI+  CE    TY M++ MF + GE  +A  +W  M
Sbjct: 396 TYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWLEM 455

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             +    ++ T+ ++I GL D G    +  LL+++I + ++ S + F  +   L   G  
Sbjct: 456 DKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLSAVGNL 515

Query: 461 DVLKFLQEKM 470
             +  L E M
Sbjct: 516 GAIHRLSEHM 525



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 31/378 (8%)

Query: 2   IKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKV----VLDTALDQS 57
           +K + SR+  + G +  LR Y      T     AK     M + P+     VL  A  + 
Sbjct: 172 MKRHGSRSVPVEGLLEILRAYTEKH-LTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKC 230

Query: 58  GIRVSPEIVEDVLEK--FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           G+    E V   +++    NA T +  FF W   +       +    ++E + +++    
Sbjct: 231 GMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDP-----KKAMKVLEEMIQMKHTPE 285

Query: 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT---QNLAAFNGL 172
            +  V A        +E+FC           V EA   F  M+  G+T        ++ +
Sbjct: 286 SFTYVAA--------IESFC-------SAGLVSEARELFEFMRTEGLTVSSPTAKTYSIM 330

Query: 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           + AL K+  + +  E+   M+    +PD  TY  L+EG      L  A  +  EM   G 
Sbjct: 331 IVALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGF 390

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PDIVTY   ++VLC     D+AL + + M    C P+   Y++L+  +        A+D
Sbjct: 391 PPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALD 450

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            +LEM+K G    +  Y  +I       + +    +L ++ ++ +  + +  + I+  L 
Sbjct: 451 IWLEMDKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLS 510

Query: 352 GRGETDEAYRVFRRMIKL 369
             G     +R+   M K 
Sbjct: 511 AVGNLGAIHRLSEHMRKF 528


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 2/347 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           ++ F I ++ +A   +++ AV  F +M+ +G    + +FN LL AL +    R+A ++FD
Sbjct: 1   MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFD 60

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
            M+DR+ PD ++Y+ L+  W    NL  A  ++ EM++ G  PD+V +  M++ L +  R
Sbjct: 61  RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 120

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
             EA+ + + M +    P  + Y++L+  +    +++ A+  F EM+  G   DVA Y  
Sbjct: 121 RPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTC 180

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           L+  +  A +   V  +L++M  KG  P+ RT N ++  L  R   D+A R++++MIK  
Sbjct: 181 LLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKG 240

Query: 370 CEADADTYTMMIKMFCQGGE-LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            E    TY MM+K +  GG        VW+ M  K   P +++++V ING    G   ++
Sbjct: 241 LEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA 300

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           C  +E+MI+KG++     + K      K G+ D+L  L +K+    K
Sbjct: 301 CKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPDILYELAQKVKFTGK 347


>gi|255580386|ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529395|gb|EEF31358.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 205/417 (49%), Gaps = 9/417 (2%)

Query: 61  VSPEIVEDVLEKFRNA---GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           +S + VE+VL +   A   G  A  FF+++ +  ++  S  A+   +  LA++R ++  W
Sbjct: 90  LSTDFVENVLGRLFAAHSNGLKALEFFRFSLRHSHFNPSSFAFEMTLHILARMRYFEKAW 149

Query: 118 DLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQK---YGVTQNLAAFNGL 172
           +L+  +      +L +++  I++ K A+ Q  E+ +  F  M+K    G T     FN L
Sbjct: 150 ELMMEIGKSHPSLLTLKSMGIMLSKIAKFQSYEDTLEAFKRMEKTVFVGKTFGTEEFNVL 209

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           L A C  + V++A+ +F  M D+F P++KT +ILL G+ K  ++      + E+V  G  
Sbjct: 210 LQAFCSQREVKEARSVFQKMHDQFNPNTKTMNILLLGFKKARDITAMELFYHEIVRRGFK 269

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
              +TY I +D  CK G   + L I + M+   C PT    + L+H  GV   I  A   
Sbjct: 270 ATSLTYNIRIDAYCKKGYFGDGLRIFEEMEKDNCPPTLETITTLIHGAGVARNIHKARHL 329

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F E+ K  +  D   YNALI +  K    ++  R++ +M  K +  +S T + I  GL+ 
Sbjct: 330 FDEIGKRNLKPDTGAYNALISSLVKCKDIESAMRLMDEMEEKHIGRDSVTYHTIFFGLMK 389

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
             +T+    ++ RMI +       T  M++K FC    L+     W+YM  K + P  H 
Sbjct: 390 LNDTEGVCDLYHRMISRDFVPKTRTVVMLMKFFCVNSRLDLGLAFWQYMLDKGYCPHGHA 449

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             +L+ GLC +G + ++    +  +E+G+R S   +  L + L +    D L+ L +
Sbjct: 450 LDLLVTGLCSRGRLLEAYECSKQFVERGMRMSEVVYRMLERSLQQSDFTDKLRELDQ 506


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 207/430 (48%), Gaps = 40/430 (9%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDT-ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           S + L    S+SK    S + ++     D SGIR++  IV+ +L KF +    A  FF+W
Sbjct: 12  SADCLSHHNSLSKARKWSVQDLIQCLGADCSGIRLTGNIVDTLLFKFGDDWKSALGFFQW 71

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           A+ + +Y H+  A + M++ L K+RQ   MW+L++ M  + ++ VET    +R+ A  ++
Sbjct: 72  AQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGARR 131

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
            ++ V  F+ ++  G+ +N    N LL  LCK + +  A+E+F  +     PD+ T++I 
Sbjct: 132 WKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHIPPDAYTFNIF 191

Query: 207 LEGW-------------------GKDP----------------NLPRAREIFREMVDTGC 231
           + GW                   G  P                N  R  E+   M   GC
Sbjct: 192 VHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGC 251

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P+++TY +++  L K  R +EAL +   M S+ C+P +  Y+ L++  G    + +A  
Sbjct: 252 HPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ 311

Query: 292 TF-LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
            F +EM  NG+  ++A YN +I  FC   +  +   VLK+M ++   P+ ++   +L   
Sbjct: 312 VFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLF 371

Query: 351 IG-RGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           +  RG+ D    +   +        D DTYT++I   C+ G+   A++++  M      P
Sbjct: 372 LSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAP 431

Query: 408 SMHTFSVLIN 417
              T  +L++
Sbjct: 432 RSKTCVMLLD 441



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           MVD+L K  ++D+   ++  M          +   +    G   R +D V  F ++E  G
Sbjct: 88  MVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGAR-RWKDVVLLFDKLEDMG 146

Query: 301 ILADVAMYNALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +  +    N L+   CK  K    + V+ VL    S  + P++ T NI ++G       D
Sbjct: 147 LERNTETMNVLLDVLCKERKIEVAREVFAVL----SPHIPPDAYTFNIFVHGWCSIRRID 202

Query: 358 EAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA      M +        TYT +++ +C+     + ++V   M  +   P++ T+++++
Sbjct: 203 EAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIM 262

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             L       ++  +   M   G +P    +  L  LL K G 
Sbjct: 263 TSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGH 305


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 200/414 (48%), Gaps = 39/414 (9%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS 102
           LS   ++     D SGIR++  IV+ +L KF +    A  FF+WA+ + +Y H+  A + 
Sbjct: 16  LSHHDLIQCLGADCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNR 75

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           M++ L K+RQ   MW+L++ M  + ++ VET    +R+ A  ++ ++ V  F+ ++  G+
Sbjct: 76  MVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGL 135

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW------------ 210
            +N    N LL  LCK + +  A+E+F  +     PD+ T++I + GW            
Sbjct: 136 ERNTETMNVLLDVLCKERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWT 195

Query: 211 -------GKDP----------------NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
                  G  P                N  R  E+   M   GC+P+++TY +++  L K
Sbjct: 196 IEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAK 255

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVA 306
             R +EAL +   M S+ C+P +  Y+ L++  G    + +A   F +EM  NG+  ++A
Sbjct: 256 CERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLA 315

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG-RGETDEAYRVFRR 365
            YN +I  FC   +  +   VLK+M ++   P+ ++   +L   +  RG+ D    +   
Sbjct: 316 TYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSE 375

Query: 366 MIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           +        D DTYT++I   C+ G+   A++++  M      P   T  +L++
Sbjct: 376 LTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCVMLLD 429



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           MVD+L K  ++D+   ++  M          +   +    G   R +D V  F ++E  G
Sbjct: 76  MVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGAR-RWKDVVLLFDKLEDMG 134

Query: 301 ILADVAMYNALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +  +    N L+   CK  K    + V+ VL    S  + P++ T NI ++G       D
Sbjct: 135 LERNTETMNVLLDVLCKERKIEVAREVFAVL----SPHIPPDAYTFNIFVHGWCSIRRID 190

Query: 358 EAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA      M +        TYT +++ +C+     + ++V   M  +   P++ T+++++
Sbjct: 191 EAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIM 250

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             L       ++  +   M   G +P    +  L  LL K G 
Sbjct: 251 TSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGH 293


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 191/399 (47%), Gaps = 39/399 (9%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           GI+ +  IV+ +L KF +    A   F+WA+   NY+H+  A   MI+ L K+RQ   MW
Sbjct: 78  GIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMW 137

Query: 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           DL++ M  + ++ VE     +R+ A  ++ ++AV  F+ +   G+ +N    N LL ALC
Sbjct: 138 DLLSDMHCRGLVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLLDALC 197

Query: 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW--------------------------- 210
           K K V  A+++F  +     PD+ T++I + GW                           
Sbjct: 198 KEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPSVIT 257

Query: 211 --------GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
                    K  N     EI   M   GC+P+++TY +++  L K    +EAL +   M 
Sbjct: 258 YTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEALSVSHRMK 317

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMYNALIGAFCKANKF 321
           S+ C+P +  Y+ L++  G    + +A   F +EM  NG+   +A YN +I  FC  +  
Sbjct: 318 SSGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLD 377

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIG-RGETDEAYRVFRRMI--KLCEADADTYT 378
           ++   VLK+M ++   P+ +T   +L   +  RG+ D    +   ++       D DTYT
Sbjct: 378 EDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYT 437

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           ++I   C+ GE + A++++  M     +P   T  +L++
Sbjct: 438 LLIHGLCRVGETDWAYRLFDEMVGSEIVPRYRTCELLLS 476


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 233/468 (49%), Gaps = 22/468 (4%)

Query: 20  RRYNSSEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           R  +S  P  +    A  +S+I+L   +P   ++++L    I  S  +++  L +  +  
Sbjct: 23  RFLSSLLPQIQPSKDADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHS 82

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137
            +A  FF +A    +   S  +Y+ +++ LAK+RQ+   W L+  M  K     +TF ++
Sbjct: 83  KIALSFFDYANSLPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHK---GTDTFLLL 139

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
           +R+     +  +A+  F+ ++  G+T N   +  F  LL  LCK   V+ A E+F+  K+
Sbjct: 140 IRRLISSGRTRQAIRAFDDIE--GLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKE 197

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK------A 248
            F  D K Y+IL+ GW K      A    ++MV+ G  P++VTY ++++ +C+       
Sbjct: 198 EFGVDVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPE 257

Query: 249 GRVDEAL----GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           GR ++ +     +   M      P    +S+++H Y   ++ E ++D   +M++ GI   
Sbjct: 258 GRFEKTIRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPT 317

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           VA Y ++I   C   + ++   ++++M   G++P+  T N       GR +   A R+++
Sbjct: 318 VATYTSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYK 377

Query: 365 RMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           +M +  LC     TY +++ +F    + E   ++W  MK     P + +++ +I+GLC+K
Sbjct: 378 KMREDCLCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEK 437

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
              S++C    +MIE+G  P   TF  L + LI+       + L++K+
Sbjct: 438 QRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKL 485



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/217 (18%), Positives = 91/217 (41%), Gaps = 2/217 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V +F I++  Y+R  K E ++     M++ G++  +A +  ++  LC    +   + + 
Sbjct: 282 DVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCLCSCGRLEDGENLI 341

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCK 247
           + M +    P   TY+   + +    +   A  ++++M  D  C P + TY I++ +   
Sbjct: 342 EEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCLCAPSLHTYNILLALFLN 401

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             + +    +   M  +   P    Y+ ++H    + R  +A   F+EM + G L     
Sbjct: 402 LDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEACQFFVEMIERGFLPQKVT 461

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +  L     +++  +   R+ K +  +     S   N
Sbjct: 462 FEMLYRGLIQSDMLRTWRRLKKKLEEESKTYGSELKN 498


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 216/432 (50%), Gaps = 6/432 (1%)

Query: 24  SSEPSTEALDAAKSISKIM---LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA 80
           +  P  + LD  ++++K++     SP++    ALD    + S  +V  VL +F N    A
Sbjct: 86  TQSPKQDNLDELEAVTKVLQKRYPSPELA-SLALDGLSFQPSSGLVSQVLNRFSNDWVPA 144

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMR 139
             FFKWA+    Y HS   Y+ M++ L K R +  M +LV  M R +  + +ET   +MR
Sbjct: 145 LGFFKWAKSLTGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLEGYVTLETMTKVMR 204

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199
           + AR +K E+A+  F  M+K+GV ++ AA N L+ AL K  +V  A ++    K      
Sbjct: 205 RLARARKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFKGSIPLS 264

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           S+++++L+ GW +  +   AR+   +M + G  PD+ +Y   ++         +   +++
Sbjct: 265 SRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLE 324

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M    C P +  Y+ ++   G   ++  A++ + +M+ +G +AD   Y+++I    KA 
Sbjct: 325 EMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAG 384

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYT 378
           + K+   V +DM  +GV  +  T N +++        + A R+ + M    C+ +  TY 
Sbjct: 385 RLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYH 444

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++KM C+   ++    +  +M      P + T+S+L+N L   G V D+   LE+M+ +
Sbjct: 445 RLLKMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLR 504

Query: 439 GIRPSGETFGKL 450
           G  P   T  KL
Sbjct: 505 GFTPKPSTLKKL 516


>gi|413952128|gb|AFW84777.1| hypothetical protein ZEAMMB73_772209 [Zea mays]
          Length = 519

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 203/410 (49%), Gaps = 7/410 (1%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           ALD  G   S  +V   L + RN+   A   F+WA  Q  Y    RA HSM++ LAK R+
Sbjct: 92  ALDGCGAEASEPLVVASLARLRNSCAAAHAAFRWAAAQPGYAPGRRACHSMLDILAKHRR 151

Query: 113 YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
           +     L++ MR     +     +++R++   + V  AV  F  +  +G     A F+GL
Sbjct: 152 FDAARALLDEMRRASTASPAAVLLLVRRHCAARDVAGAVAAFRALPSFGFHTGAAEFHGL 211

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGC 231
           LSALC+ KNV+ A+ +    +  F  ++K+++I+L GW     ++  A+  +  M   G 
Sbjct: 212 LSALCRYKNVQDAENLLISWQKEFPFETKSFNIVLNGWCNIVCSVREAKRFWSSMERKGI 271

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
             D+++YG M+    KAG +D  + +   M+     P   +Y+ +V        +++A  
Sbjct: 272 ARDVLSYGSMISCFSKAGSLDSVMKLFNRMNEAGVAPDRKVYNAIVFALAKGRCVKEAKM 331

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
               ME+  +  D A +N+LIG  CKA +F+    +   M  + ++P+ RT + +LN  +
Sbjct: 332 LVRSMEEKQVAPDTATFNSLIGPLCKARQFQEAMEMFDAMLQRKLSPSVRTFHALLN--V 389

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
            R  T E + +  +M +L CE + DTY M+I+ FC+  E E   K+W  M      P   
Sbjct: 390 ARNST-EVFDLLDKMKQLRCEPEMDTYIMLIRKFCRWREHESVEKLWSAMPANGLSPDRS 448

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
            + VLI+GL   G + ++    E+M  KG  P  +T   +   L  EGRE
Sbjct: 449 AYIVLIHGLFLNGRLEEAARYYEEMKSKGFLPEKKTEEMVMAWL--EGRE 496


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 206/402 (51%), Gaps = 6/402 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--II 137
           AF  F  AE       +V A+  +I+ L    +++   +LV     ++   ++ F   ++
Sbjct: 49  AFDLFNQAESFA-CSPTVHAFTKLIDILVNSGEFE-RAELVYKKLVQKGCQLDRFAYNVL 106

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-F 196
           +R + R  +++ A+  F  M+  G   +   +  L++AL K+  V++A+  FD M +R  
Sbjct: 107 IRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGL 166

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  TY++L++ + K   L  A  +F EM   G  P +VTY I++D LC AGRV  A  
Sbjct: 167 TPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARK 226

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +   M    C P S+ YS LV+  G   R+E+A   F EM   G+  D+  YN+L+    
Sbjct: 227 LFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLA 286

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           KA     V++++K+M+ KG  P++ + N I++ L    + D A  VF RM++  C+ D  
Sbjct: 287 KAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLI 346

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +Y ++I  + + G+  +A ++ + M    FIP   T++ LI+ L   G V ++  +LE+M
Sbjct: 347 SYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM 406

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
              G RP   T+ +L  +L K G       L ++M     EP
Sbjct: 407 ETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEP 448



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 177/339 (52%), Gaps = 3/339 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  ++ +L K  + Q      +AM  + +  N+ T+ ++M  + +V +++ A+  F  M+
Sbjct: 138 YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMK 197

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLP 217
           + G   ++  +N LL ALC +  V  A+++F  M  D   PDS TYS L+ G GK   + 
Sbjct: 198 RRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVE 257

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++FREMVD G   D+V Y  ++  L KAG +D    ++K M      P +F ++ ++
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIM 317

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
              G  N+ + A + F  M ++G   D+  YN LI ++ +        ++L++M   G  
Sbjct: 318 DALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFI 377

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P ++T N +++ L   G+ DEA+ V   M    C  D  TY  ++ M  + GE ++A ++
Sbjct: 378 PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARL 437

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           ++ MK K   P   +++V I+GL     + ++ VL +DM
Sbjct: 438 FQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 162/327 (49%), Gaps = 4/327 (1%)

Query: 69  VLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           +++ FR  G L      +AE K++ ++ SV  Y+ ++++L    +      L + M    
Sbjct: 176 LMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG 235

Query: 128 -MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
              +  T+  ++    +  +VEEA   F  M   GV  +L  +N LL+ L K+ N+ +  
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVW 295

Query: 187 EIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           ++   M  + F PD+ +++ +++  GK      ARE+F  MV++GC PD+++Y I++D  
Sbjct: 296 KLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
            + G   +A  +++ M      P +  Y+ L+H    + ++++A     EME  G   DV
Sbjct: 356 ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDV 415

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN L+    K  + +   R+ + M  KGV P++ +  + ++GL      DEA  +F+ 
Sbjct: 416 VTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKD 475

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELE 391
           M  + C  D   Y ++I+   + G+ E
Sbjct: 476 MKAVGCPVDKAMYRILIRAAHRAGDTE 502



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 124/265 (46%), Gaps = 2/265 (0%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+  +G+      A ++F +     C+P +  +  ++D+L  +G  + A  + K +    
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C+   F Y+VL+  +G   +++ A++ F EM+  G   D   Y  L+ A  KA + +   
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMF 384
                M  +G+ PN  T N++++     G+ D A  +F  M +   +    TY +++   
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDAL 215

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C  G +  A K++  M      P  +T+S L+NGL   G V ++  +  +M+++G+    
Sbjct: 216 CSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDL 275

Query: 445 ETFGKLRKLLIKEGRED-VLKFLQE 468
             +  L   L K G  D V K ++E
Sbjct: 276 VNYNSLLATLAKAGNMDRVWKLMKE 300


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 200/428 (46%), Gaps = 4/428 (0%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           P+  L  AL      ++P     VL + R+    +  FF +A +   + H   +   +  
Sbjct: 78  PRHDLPAALRGFAPWLTPGDAAAVLRRCRHLPLPSLRFFLFAGELPGFSHHPDSLLVLAN 137

Query: 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           SLA  R + ++  L++ +     L+   F ++ R Y+R +  E+A+  F+ M  +G    
Sbjct: 138 SLAGARLFPLLRSLLSDL-PPSALSRGLFPLLFRAYSRARLPEDAIRAFSSMAGFGFPPT 196

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           +A F+ LL AL ++  V   +  F     +F   +K Y+IL+ GW        AR +F E
Sbjct: 197 IADFHSLLFALSRNGLVEYGERFFRESSAQFDVSAKAYTILISGWAVVKKPENARSLFDE 256

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVEN 284
           MV+ G   D+  Y  ++D LC+ G +  A   + +M  S    P +  Y   +H      
Sbjct: 257 MVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASK 316

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            +  A+     M  + +  +V  YNA+I   C   +    Y +L ++ ++G  P+  + N
Sbjct: 317 DVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYN 376

Query: 345 IILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +LN      E ++A R+  RM K LC  D  +Y M++KM    G  + A +VW  M+ +
Sbjct: 377 TLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIGVGRFDTAIEVWDGMEKR 436

Query: 404 RFIPSMHTFSVLINGLCD-KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
            F P   T++V+I+GL   KG   D+C     M+++GI P   T   LR  L+  G  D 
Sbjct: 437 GFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGIPPYQATCEVLRDRLLMLGLRDQ 496

Query: 463 LKFLQEKM 470
           L  L ++M
Sbjct: 497 LGVLTDRM 504


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 220/456 (48%), Gaps = 18/456 (3%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           +D  K I K    S   V+  ALD+SGI  + ++V  +LE+F N    A   F WA+ Q 
Sbjct: 35  IDKVKGILKRHFPSEDAVV-KALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQT 93

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT-KRMLNVETFCIIMRKYARVQKVEEA 150
            Y H+ R Y  +++ L K +++ IMW +VN M      ++  T  I++R+ A     ++ 
Sbjct: 94  GYVHTPRLYDLVVDILGKCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDV 153

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +     ++KY V ++  A N ++ AL K    + A  +F   KD    DS +++IL+ G+
Sbjct: 154 IDVLRGLEKYRVKKDTVALNMVMHALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGY 213

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +   L  AR+   EM   G  PD  +Y   +   CK         I+  M    C P  
Sbjct: 214 CEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDV 273

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             YS+ +   G   +I +A++ + +M KN    D   ++ LI    ++ +  + + V +D
Sbjct: 274 IAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFED 333

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M + GV+ +  T N ++       + + A ++  RM +  C+ D +TY  ++KM C+   
Sbjct: 334 MENHGVSRDLWTYNAMIYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCK--- 390

Query: 390 LEKAFKVWKYMKLKRFIPS----MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             K  KV K++    F  +    + T+++LI  L + G +  +C   +D +  GI P   
Sbjct: 391 -MKDMKVLKFLLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIVPKDR 449

Query: 446 TFGKLRKLLIKE-GREDV--LKFLQEKMNLLVKEPL 478
           T+    ++L+KE G+ ++  +K   EK+ L  KE +
Sbjct: 450 TY----EILLKELGQNNMVEMKGKIEKLMLQAKEQI 481


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 196/404 (48%), Gaps = 4/404 (0%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           P+  L  ALD    R++P    DVL + RN    +  FF +A     + H   +   +  
Sbjct: 63  PRHDLRAALDGFAPRLTPAAAADVLRRCRNLPVPSLRFFLFAAALPGFTHLPESLLILAG 122

Query: 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           SLA  R + ++  L++ +  +  L+ + F ++ R YAR    ++A+  F+ M+++G    
Sbjct: 123 SLAGARLFPLLRSLLSDL-PRPALSRDLFPLLFRAYARAGLPDDAIRAFSSMERFGFLPT 181

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           +A  + LL  L  +  V  A+  F     +F   +KTY+IL+ GW       +A+++F E
Sbjct: 182 VADLHSLLFTLSHNGLVEHAEAFFRESPIQFDVSAKTYTILISGWAVVAKPEKAQKLFDE 241

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVEN 284
           M++ G  PD+  Y  ++D LC+ G V  A   +K M  S    P +  Y   + +     
Sbjct: 242 MIERGVQPDVPAYNALIDALCRGGDVALAQEQLKDMQRSRGLAPDAATYGPFLRSACASK 301

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
               A+     M    +  +V  YNA+I   C+  +    Y +L +M + G  P+  + N
Sbjct: 302 DARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYN 361

Query: 345 IILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +LN      E ++A R+  RM + LC  +  +Y M++KM    G +++A +VW  M+ +
Sbjct: 362 TLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMILKMLIAIGRVDRAIEVWDGMEKR 421

Query: 404 RFIPSMHTFSVLINGL-CDKGIVSDSCVLLEDMIEKGIRPSGET 446
            F P   T++V+I+GL C KG   ++C     M++ GI P   T
Sbjct: 422 GFHPGAATYAVMIHGLSCKKGRAEEACSYFLRMVDDGIPPYQAT 465


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 203/421 (48%), Gaps = 44/421 (10%)

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-R 124
           V  VL   +  GT A  FF+WA +Q  ++H V  Y+ ++  L   + Y   + +   M +
Sbjct: 89  VAAVLRSLKVTGT-AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLK 147

Query: 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC------- 177
                N  +F I++R +AR ++ ++AV  F +M++     +L  F  L+  LC       
Sbjct: 148 AGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEK 207

Query: 178 -----------------------------KSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
                                        K+K V++A+E+F  M K  F PD+  Y+ ++
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K  +   A ++   M+   C P  VTYGI+V+ LCKAG ++ A  + + M ++  R
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P S IY+ L+H +    R+++A   F EM + G   DV  +  +I   CK+  F+   + 
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M   G  PN  T   I+ GL   G    A+R+ + MI   C  D+ TY  ++  FC+
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G L++A ++   +      P++  +S L+NGLCD G V  +   L+D+ E+  + + ET
Sbjct: 448 LGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKT---LDDLFEQS-KAAAET 503

Query: 447 F 447
            
Sbjct: 504 L 504



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 184/413 (44%), Gaps = 44/413 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI+ LAK    Q    +++ M  K  +  E T+ I++    +   +E A   F VM
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM 321

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
              G   N   +  L+    KS  +++A  +FD M +  + PD  T++++++G  K  N 
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMV---------------------------------- 242
            +A + F EM+  GC P++VTY  ++                                  
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICL 441

Query: 243 -DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
            D  CK GR+DEA  ++  +D     P   +YS LV+       +E  +D   E  K   
Sbjct: 442 LDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAA 501

Query: 302 -LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D  +  ++I   CK  +     R+ + M S+G  P++ T NI++NGL  R   +   
Sbjct: 502 ETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC-RSRENRVE 560

Query: 361 RVFRRMIKLCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           R F  +  L +     DA TYT +    C+ GE+++A K+ +    + +   +  ++ L 
Sbjct: 561 RAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            GLC +G V  +  L ++M+ +G  P    +  +   LIK  + ED  KF  E
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDE 673



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 178/381 (46%), Gaps = 8/381 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+ L+KI +    + ++  M       +  T+  ++  + ++ +++EA    
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLL 458

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRF-IPDSKTYSILLEGWGK 212
           + + K   + NL  ++ L++ LC   +V K   ++F+  K      D      ++ G  K
Sbjct: 459 DELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCK 518

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA--GRVDEALGIVKSMDSTVCRPTS 270
              L  A  IF+ MV  GC PD  TY I+++ LC++   RV+ A  ++  ++     P +
Sbjct: 519 TGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDA 578

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L         ++ AV    E    G  ADV  Y AL    C   +      + ++
Sbjct: 579 VTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQE 638

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  +G AP++     I+NGLI   + ++A + F  MI K  +    TYT +++  C  G 
Sbjct: 639 MVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698

Query: 390 LEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++AF  ++ M  +   + S+  +  LI+G C    V  +  L EDMI +G  P+  T  
Sbjct: 699 VDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSA 758

Query: 449 KLRKLLIKEGR-EDVLKFLQE 468
            L   L++ G+ E   + LQE
Sbjct: 759 SLFDGLVRSGKTEKAQELLQE 779



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 167/363 (46%), Gaps = 5/363 (1%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN--VMQK 159
           S++E++  +R     W + N       ++ +     +    R  KV     +F     ++
Sbjct: 53  SIVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQ 112

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPR 218
            G   ++  +N L++ L   KN  +   I + M K    P++ +++IL+  + +      
Sbjct: 113 AGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADD 172

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIYSVLV 277
           A   F  M    C PD+ T+ I+VD LCKAG  ++A  +   M +     P   +++ +V
Sbjct: 173 AVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMV 232

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
            T     R+++A + F +MEK G   D   YN +I    KA   +   +VL +M +K   
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKV 396
           P   T  I++N L   G  + A  +FR M       ++  YT +I  F + G +++A  +
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +  M    + P + T +V+I+GLC  G    +    E+M+  G +P+  T+  + + L K
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412

Query: 457 EGR 459
            GR
Sbjct: 413 IGR 415



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 3/278 (1%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F  D  TY+ L+     + N  +   I  EM+  G  P+  ++ I++    +  R D+A+
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAV 174

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNALIGA 314
              + M    C+P    + +LV         E A + F EM   G +  D A++ A++  
Sbjct: 175 TCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRT 234

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
             KA + K    V   M   G  P++   N +++GL   G   EA +V   M+ K C   
Sbjct: 235 LLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT 294

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY +++   C+ G LE+A ++++ M    F P+   ++ LI+G    G + ++C L +
Sbjct: 295 EVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           +M+E G RP   T   +   L K G  E   K  +E M
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMM 392



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVE 148
            + +   V AY ++   L    Q      L   M R     +   +C I+    +V+K+E
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLE 665

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSIL 206
           +A   F+ M   G    +A +  L+ ALC + NV +A   F+ M  R   +     Y  L
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDAL 725

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A ++F +M+  G  P  VT   + D L ++G+ ++A  +++ M +   
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGS 785

Query: 267 RPTSFIYSVLV 277
            P +  ++ ++
Sbjct: 786 PPHAATFTAIL 796


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 190/363 (52%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  + K  Q  +  +L+  M  + + L+   + II+    +   ++ A   FN M
Sbjct: 328 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 387

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
           +  G+T N+  +N L+   C +       ++  D +K +  P+  T+S+L++ + K+  L
Sbjct: 388 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 447

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+ +EM+  G  PD +TY  ++D  CK   +D+A  +V  M S  C P    +++L
Sbjct: 448 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ Y   NRI+D ++ F +M   G++AD   YN LI  FC+  K      + ++M S+ V
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 567

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T  I+L+GL   GE+++A  +F ++ K   E D   Y ++I   C   +++ A+ 
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 627

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P + T++++I GLC KG +S++ +L   M E G  P G T+  L +  +
Sbjct: 628 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 687

Query: 456 KEG 458
            +G
Sbjct: 688 GDG 690



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  +  +  ++AK +QY ++  L   M  K +  N+ T  I++  + R +K+  A    
Sbjct: 185 TVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAM 244

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             + K G   N   F+ L++ LC    V +A E+ D M +    PD  T + L+ G    
Sbjct: 245 GKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLS 304

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +  +MV+ GC P+ VTYG +++V+CK+G+   A+ +++ M+    +  +  Y
Sbjct: 305 GKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 364

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+++        +++A + F EME  GI  ++  YN LIG FC A ++ +  ++L+DM  
Sbjct: 365 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 424

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T +++++  +  G+  EA  + + MI +    D  TYT +I  FC+   L+K
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 484

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M  K   P++ TF++LING C    + D   L   M  +G+     T+  L +
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544

Query: 453 LLIKEGREDVLKFLQEKM 470
              + G+ +V K L ++M
Sbjct: 545 GFCELGKLNVAKELFQEM 562



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYS 204
           K  EA+   + M +YG   N   +  +L+ +CKS     A E+   M++R I  D+  YS
Sbjct: 306 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 365

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+++G  K  +L  A  +F EM   G   +I+TY I++   C AGR D+   +++ M   
Sbjct: 366 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 425

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    +SVL+ ++  E ++ +A +   EM   GI  D   Y +LI  FCK N     
Sbjct: 426 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 485

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
            +++  M SKG  PN RT NI++NG       D+   +FR+M ++   AD  TY  +I+ 
Sbjct: 486 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 545

Query: 384 FCQ-----------------------------------GGELEKAFKVWKYMKLKRFIPS 408
           FC+                                    GE EKA ++++ ++  +    
Sbjct: 546 FCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELD 605

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           +  ++++I+G+C+   V D+  L   +  KG++P  +T+  +   L K+G     + L  
Sbjct: 606 IGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFR 665

Query: 469 KM 470
           KM
Sbjct: 666 KM 667



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 2/354 (0%)

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
           + + ++ +  V  F  +    A+ ++ +  +     M+  G+  NL   + +++  C+ +
Sbjct: 176 DMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCR 235

Query: 181 NVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            +  A   +   +K  + P++ T+S L+ G   +  +  A E+   MV+ G  PD++T  
Sbjct: 236 KLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITIN 295

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +V+ LC +G+  EA+ ++  M    C+P +  Y  +++      +   A++   +ME+ 
Sbjct: 296 TLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER 355

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
            I  D   Y+ +I   CK     N + +  +M  KG+  N  T NI++ G    G  D+ 
Sbjct: 356 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 415

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
            ++ R MIK     +  T++++I  F + G+L +A ++ K M  +   P   T++ LI+G
Sbjct: 416 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 475

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
            C +  +  +  +++ M+ KG  P+  TF  L     K  R D    L  KM+L
Sbjct: 476 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSL 529



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 4/255 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +++A    ++M   G   N+  FN L++  CK+  +    E+F  M
Sbjct: 468 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 527

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R  + D+ TY+ L++G+ +   L  A+E+F+EMV     P+IVTY I++D LC  G  
Sbjct: 528 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 587

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++AL I + ++ +       IY++++H     ++++DA D F  +   G+   V  YN +
Sbjct: 588 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           IG  CK         + + M   G AP+  T NI++   +G G+  ++ ++   + K C 
Sbjct: 648 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL-KRCG 706

Query: 371 -EADADTYTMMIKMF 384
              DA T  M+I M 
Sbjct: 707 FSVDASTIKMVIDML 721



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 132/284 (46%), Gaps = 11/284 (3%)

Query: 184 KAQEIFDCMKD----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           KA +  D  +D    R +P    +S L     K         + ++M   G   ++ T  
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 225

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           IM++  C+  ++  A   +  +      P +  +S L++   +E R+ +A++    M + 
Sbjct: 226 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 285

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D+   N L+   C + K      ++  M   G  PN+ T   +LN +   G+T  A
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 360 YRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             + R+M    IKL   DA  Y+++I   C+ G L+ AF ++  M++K    ++ T+++L
Sbjct: 346 MELLRKMEERNIKL---DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 402

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           I G C+ G   D   LL DMI++ I P+  TF  L    +KEG+
Sbjct: 403 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 446



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ + +DA+D F +M  +  L  V  ++ L  A  K  ++  V  + K M  KG+A N  
Sbjct: 163 VDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLY 222

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T +I++N      +   A+    ++IKL  E +  T++ +I   C  G + +A ++   M
Sbjct: 223 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 282

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P + T + L+NGLC  G  +++ +L++ M+E G +P+  T+G +  ++ K G+ 
Sbjct: 283 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 342

Query: 461 DVLKFLQEKM 470
            +   L  KM
Sbjct: 343 ALAMELLRKM 352


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 190/363 (52%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  + K  Q  +  +L+  M  + + L+   + II+    +   ++ A   FN M
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
           +  G+T N+  +N L+   C +       ++  D +K +  P+  T+S+L++ + K+  L
Sbjct: 290 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 349

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+ +EM+  G  PD +TY  ++D  CK   +D+A  +V  M S  C P    +++L
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ Y   NRI+D ++ F +M   G++AD   YN LI  FC+  K      + ++M S+ V
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T  I+L+GL   GE+++A  +F ++ K   E D   Y ++I   C   +++ A+ 
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P + T++++I GLC KG +S++ +L   M E G  P G T+  L +  +
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 589

Query: 456 KEG 458
            +G
Sbjct: 590 GDG 592



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  +  +  ++AK +QY ++  L   M  K +  N+ T  I++  + R +K+  A    
Sbjct: 87  TVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAM 146

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             + K G   N   F+ L++ LC    V +A E+ D M +    PD  T + L+ G    
Sbjct: 147 GKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLS 206

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +  +MV+ GC P+ VTYG +++V+CK+G+   A+ +++ M+    +  +  Y
Sbjct: 207 GKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+++        +++A + F EME  GI  ++  YN LIG FC A ++ +  ++L+DM  
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 326

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T +++++  +  G+  EA  + + MI +    D  TYT +I  FC+   L+K
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M  K   P++ TF++LING C    + D   L   M  +G+     T+  L +
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446

Query: 453 LLIKEGREDVLKFLQEKM 470
              + G+ +V K L ++M
Sbjct: 447 GFCELGKLNVAKELFQEM 464



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 199/430 (46%), Gaps = 23/430 (5%)

Query: 60  RVSPEIVEDVLEKFRNAGTL-----------AFC----FFKWAEKQQNYEHSVRAYHSMI 104
           R+S ++ + V  +    GTL           +FC    F  ++++  +Y   +R+    I
Sbjct: 8   RLSSQVSKFVQPRLLETGTLRIALINCPNELSFCCERGFSAFSDRNLSYRERLRSGLVDI 67

Query: 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           ++   I  ++ M      + ++ +  V  F  +    A+ ++ +  +     M+  G+  
Sbjct: 68  KADDAIDLFRDM------IHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAH 121

Query: 165 NLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
           NL   + +++  C+ + +  A   +   +K  + P++ T+S L+ G   +  +  A E+ 
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             MV+ G  PD++T   +V+ LC +G+  EA+ ++  M    C+P +  Y  +++     
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            +   A++   +ME+  I  D   Y+ +I   CK     N + +  +M  KG+  N  T 
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 301

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           NI++ G    G  D+  ++ R MIK     +  T++++I  F + G+L +A ++ K M  
Sbjct: 302 NILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           +   P   T++ LI+G C +  +  +  +++ M+ KG  P+  TF  L     K  R D 
Sbjct: 362 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDD 421

Query: 463 LKFLQEKMNL 472
              L  KM+L
Sbjct: 422 GLELFRKMSL 431



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 5/265 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +++A    ++M   G   N+  FN L++  CK+  +    E+F  M
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R  + D+ TY+ L++G+ +   L  A+E+F+EMV     P+IVTY I++D LC  G  
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++AL I + ++ +       IY++++H     ++++DA D F  +   G+   V  YN +
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           IG  CK         + + M   G AP+  T NI++   +G G+  ++ ++   + K C 
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL-KRCG 608

Query: 371 -EADADTYTMMIKMFCQGGELEKAF 394
              DA T  M+I M    G L+K+F
Sbjct: 609 FSVDASTIKMVIDML-SDGRLKKSF 632


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 199/412 (48%), Gaps = 43/412 (10%)

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-R 124
           V  VL   +  GT A  FF+WA +Q  ++H V  Y+ ++  L   + Y   + +   M +
Sbjct: 89  VAAVLRSLKVTGT-AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLK 147

Query: 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC------- 177
                N  +F I++R +AR ++ ++AV  F +M++     +L  F  L+  LC       
Sbjct: 148 AGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEK 207

Query: 178 -----------------------------KSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
                                        K+K V++A+E+F  M K  F PD+  Y+ ++
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K  +   A ++   M+   C P  VTYGI+V+ LCKAG ++ A  + + M ++  R
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P S IY+ L+H +    R+++A   F EM + G   DV  +  +I   CK+  F+   + 
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M   G  PN  T   I+ GL   G    A+R+ + MI   C  D+ TY  ++  FC+
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            G L++A ++   +      P++  +S L+ GLCD G V ++   L+D+ E+
Sbjct: 448 LGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENT---LDDLFEQ 496



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 183/413 (44%), Gaps = 44/413 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI+ LAK    Q    +++ M  K  +  E T+ I++    +   +E A   F VM
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM 321

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
              G   N   +  L+    KS  +++A  +FD M +  + PD  T++++++G  K  N 
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMV---------------------------------- 242
            +A + F EM+  GC P++VTY  ++                                  
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICL 441

Query: 243 -DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
            D  CK GR+DEA  ++  +D     P   +YS LV        +E+ +D   E  K   
Sbjct: 442 LDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAA 501

Query: 302 L-ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D  +  ++I   CK  +     R+ + M S+G  P++ T NI++NGL  R   +   
Sbjct: 502 ENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC-RSRENRVE 560

Query: 361 RVFRRMIKL----CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           R F  +  L       DA TYT +    C+ GE+++A K+ +    + +   +  ++ L 
Sbjct: 561 RAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            GLC +G V  +  L ++M+ +G  P    +  +   LIK  + ED  KF  E
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDE 673



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 176/381 (46%), Gaps = 8/381 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+ L+KI +    + ++  M       +  T+  ++  + ++ +++EA    
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLL 458

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIP-DSKTYSILLEGWGK 212
           + + K   + NL  ++ L+  LC   +V     ++F+  K      D      ++ G  K
Sbjct: 459 DELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCK 518

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA--GRVDEALGIVKSMDSTVCRPTS 270
              L  A  IF+ MV  GC PD  TY I+++ LC++   RV+ A  ++  ++     P +
Sbjct: 519 TGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDA 578

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L         ++ AV    E    G  ADV  Y AL    C   +      + ++
Sbjct: 579 VTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQE 638

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  +G AP++     I+NGLI   + ++A + F  MI K  +    TYT +++  C  G 
Sbjct: 639 MVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698

Query: 390 LEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++AF  ++ M  +   + S+  +  LI+G C    V  +  L EDMI +G  P+  T  
Sbjct: 699 VDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSA 758

Query: 449 KLRKLLIKEGR-EDVLKFLQE 468
            L   L++ G+ E   + LQE
Sbjct: 759 SLFDGLVRSGKTEKAQELLQE 779



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 167/363 (46%), Gaps = 5/363 (1%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN--VMQK 159
           S++E++  +R     W + N       ++ +     +    R  KV     +F     ++
Sbjct: 53  SIVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQ 112

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPR 218
            G   ++  +N L++ L   KN  +   I + M K    P++ +++IL+  + +      
Sbjct: 113 AGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADD 172

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIYSVLV 277
           A   F  M    C PD+ T+ I+VD LCKAG  ++A  +   M +     P   +++ +V
Sbjct: 173 AVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMV 232

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
            T     R+++A + F +MEK G   D   YN +I    KA   +   +VL +M +K   
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKV 396
           P   T  I++N L   G  + A  +FR M       ++  YT +I  F + G +++A  +
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +  M    + P + T +V+I+GLC  G    +    E+M+  G +P+  T+  + + L K
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412

Query: 457 EGR 459
            GR
Sbjct: 413 IGR 415



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 3/278 (1%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F  D  TY+ L+     + N  +   I  EM+  G  P+  ++ I++    +  R D+A+
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAV 174

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNALIGA 314
              + M    C+P    + +LV         E A + F EM   G +  D A++ A++  
Sbjct: 175 TCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRT 234

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
             KA + K    V   M   G  P++   N +++GL   G   EA +V   M+ K C   
Sbjct: 235 LLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT 294

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY +++   C+ G LE+A ++++ M    F P+   ++ LI+G    G + ++C L +
Sbjct: 295 EVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           +M+E G RP   T   +   L K G  E   K  +E M
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMM 392



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 3/191 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVE 148
            + +   V AY ++   L    Q      L   M R     +   +C I+    + +K+E
Sbjct: 606 SRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLE 665

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSIL 206
           +A   F+ M   G    +A +  L+ ALC + NV +A   F+ M  R   +     Y  L
Sbjct: 666 DACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDAL 725

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A ++F +M+  G  P  VT   + D L ++G+ ++A  +++ M +   
Sbjct: 726 IHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGS 785

Query: 267 RPTSFIYSVLV 277
            P +  ++ ++
Sbjct: 786 PPHAATFTAIL 796


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 216/438 (49%), Gaps = 44/438 (10%)

Query: 44  SSPKVVLDTALDQSG---IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY 100
           SS +  L T  +      I +S ++V  +L ++++    A   F+WA  + ++ HS  +Y
Sbjct: 53  SSEEETLHTLFNDQACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESY 112

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
             M++ L +++  + + DL+  MR   ++N+ T    MR++    +  +AV  F+ +Q  
Sbjct: 113 DMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQAL 172

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-------- 212
           G+ +N  + N LL  LCK K V++A+EIF  +K    P++ T++I + GW K        
Sbjct: 173 GLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAH 232

Query: 213 ---------------------------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
                                      + N  R  E+  EM   GC+ +++TY  ++  L
Sbjct: 233 WTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCAL 292

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILAD 304
            KA + +EAL + + M S+ CRP +  ++ L+HT G   R++DA D F +EM K G+  +
Sbjct: 293 GKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPN 352

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAY-RV 362
            + YN++I  FC   + K    +LK+M NS G  P+++T + ++      G+ D     +
Sbjct: 353 TSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEI 412

Query: 363 FRRMI--KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
              MI  +    D  TYT++I   C+      AF +++ M  +  IP   T  +L++ + 
Sbjct: 413 LNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVK 472

Query: 421 DKGIVSDSCVLLEDMIEK 438
            K +   +   +ED+++K
Sbjct: 473 QKNMYQ-AAEKIEDLMKK 489



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 165/394 (41%), Gaps = 45/394 (11%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVV--LDTALDQ--SGIRVSPEIVEDVLEKFRNA 76
           R+ SS PS      +  +   +L   KV+  L   L++   G  V+   V   + +F  A
Sbjct: 97  RWASSRPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTVAKAMRRFVGA 156

Query: 77  GTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135
           G        + + Q    E +  + + ++++L K +  Q   ++   ++     N  TF 
Sbjct: 157 GQWVDAVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFN 216

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I +  + ++ +V+EA +T   M+ YG    + +++ L+   C+  N  +  E+ D M+ +
Sbjct: 217 IFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQ 276

Query: 196 FI------------------------------------PDSKTYSILLEGWGKDPNLPRA 219
                                                 PD+  ++ L+   G+   L  A
Sbjct: 277 GCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDA 336

Query: 220 REIFR-EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLV 277
            ++F+ EM   G +P+  TY  M+ + C   +   AL I+K M+ S  C+P +  Y  L+
Sbjct: 337 ADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLI 396

Query: 278 HTYGVENRIEDAVDTFLE--MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
            +     +I+  +   L   + K  +  D++ Y  LI   C+ ++    + + ++M  + 
Sbjct: 397 KSCFRSGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQD 456

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
           + P  RTC ++L+ +  +     A ++   M KL
Sbjct: 457 IIPRYRTCRLLLDEVKQKNMYQAAEKIEDLMKKL 490


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 195/424 (45%), Gaps = 4/424 (0%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L  AL        P     VL + R+    +  FF +A +   + H   +   +  SLA 
Sbjct: 75  LPAALRGFAPGFQPRDAAAVLRRCRHLPLPSLRFFLFAGELPGFSHHPDSLLVLANSLAG 134

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            R + ++  L++ +     L+   F ++ R Y+R +  E+A+  F+ M  +G    +A F
Sbjct: 135 ARLFPLLRSLLSDL-PPSALSRGLFPLLFRAYSRARLPEDAIRAFSSMAGFGFPPTIADF 193

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           + LL AL ++  V   +  F     +F   +K Y+IL+ GW        AR +F EMV  
Sbjct: 194 HSLLFALSRNGLVEYGERFFRESTAQFDVSAKAYTILISGWAVVKKPENARSLFDEMVKR 253

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVENRIED 288
           G   D+  Y  ++D LC+ G +  A   + +M  S    P +  Y   +H       +  
Sbjct: 254 GVELDVHVYNALIDALCRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRA 313

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+     M  + +  +V  YNA+I   C   +    Y +L ++ ++G  P+  + N +LN
Sbjct: 314 ALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPDVWSYNTLLN 373

Query: 349 GLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
                 E ++A R+  RM K LC  D  +Y M++KM    G  + A +VW  M+ + F P
Sbjct: 374 AHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLISVGRFDTAIEVWDGMEKRGFHP 433

Query: 408 SMHTFSVLINGLCD-KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
              T++V+I+GL   KG   D+C     M+++GI P   T   LR  L+  G  D L  L
Sbjct: 434 GAATYAVMIHGLASKKGRAEDACSYFVRMVDEGIPPYQATCEVLRDRLLMLGLRDQLGVL 493

Query: 467 QEKM 470
            ++M
Sbjct: 494 TDRM 497


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 200/387 (51%), Gaps = 20/387 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVET--FC 135
           A  FF WA+ +  Y H+ ++Y SM+E L + R      + + ++  R++ ++ +E   F 
Sbjct: 95  ALQFFNWAQ-EMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFN 153

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            +MR + R    +E++  F +M+ +GV+ ++  FN LL+ L K      A++++D M   
Sbjct: 154 SLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLST 213

Query: 196 F--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +   PD+ T++IL+ G+  +  +     IF ++   GC PD+VTY  +VD LC+AG+V  
Sbjct: 214 YGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTV 273

Query: 254 ALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           A  +VK M   S    P    Y+ L+  Y  +  IE A+  F EM   G+ A+   YN L
Sbjct: 274 AYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTL 333

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGV-APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           I   C+A KF+ +  +L+     G  +P++ T N +++     G  D+A +VF RM +L 
Sbjct: 334 IKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELK 393

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-------PSMHTFSVLINGLCDK 422
            + D+ TY+ +++  CQGG  EKA  +   +  ++ +       P +  ++ +   LC+ 
Sbjct: 394 IQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCET 453

Query: 423 GIVSDSCVLLEDMIEKGIR--PSGETF 447
           G    +      ++ +G +  PS +T 
Sbjct: 454 GKTKKAEKAFRQLMRRGTQDPPSYKTL 480



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 164/341 (48%), Gaps = 17/341 (4%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF I++R +     V++    FN + ++G   ++  +N L+  LC++  V  A  +   M
Sbjct: 222 TFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGM 281

Query: 193 KDRFI---PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             + +   P+  TY+ L+ G+     + +A  +F EMV+ G   + +TY  ++  LC+A 
Sbjct: 282 GKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEAR 341

Query: 250 RVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           + ++   I++    D T   P +  ++ L+H +     ++DA+  F  M +  I  D A 
Sbjct: 342 KFEKIKDILEGTAGDGTFS-PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSAT 400

Query: 308 YNALIGAFCKANKFKNVYRVLKDM-------NSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           Y+AL+ + C+   ++    +L  +       +  G  P     N I   L   G+T +A 
Sbjct: 401 YSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAE 460

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           + FR++++    D  +Y  +I   C+ G  E  +++   M  K F+P   T+  LINGL 
Sbjct: 461 KAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLL 520

Query: 421 --DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             DK +++     LE M+    RP+  TF  +   L+++GR
Sbjct: 521 HMDKPLLALQS--LEKMLRSSHRPNSSTFHSILAKLLEQGR 559



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 165/350 (47%), Gaps = 13/350 (3%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           +++    ++   +A+  FN  Q+ G T    ++  +L  L +++++  A+     ++ R 
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141

Query: 196 ---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
                 +++ ++ L+  + +      + ++F  M   G +P +VT+  ++ +L K GR +
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTN 201

Query: 253 EALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            A  +   M ST    P +F +++L+  + +   ++D    F ++ + G   DV  YN L
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTL 261

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGV--APNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
           +   C+A K    Y V+K M  K V   PN  T   ++ G   + E ++A  VF  M+ +
Sbjct: 262 VDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQ 321

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSD 427
             +A+  TY  +IK  C+  + EK   + +       F P   TF+ L++  C  G + D
Sbjct: 322 GLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDD 381

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQEKMNLL 473
           +  + E M E  I+P   T+  L + L + G     ED+L  L E+  LL
Sbjct: 382 ALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILL 431



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 161/388 (41%), Gaps = 53/388 (13%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEA 150
           E  V  Y+++++ L +  +  + +++V  M  K +    NV T+  ++R Y   +++E+A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLE 208
           +  F  M   G+  N   +N L+  LC+++   K ++I +       F PD+ T++ L+ 
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMH 371

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM------- 261
                 NL  A ++F  M +    PD  TY  +V  LC+ G  ++A  ++  +       
Sbjct: 372 CHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILL 431

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C+P    Y+ +        + + A   F ++ + G   D   Y  LI   CK   F
Sbjct: 432 SGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGT-QDPPSYKTLIMGHCKEGTF 490

Query: 322 KNVYRVL-----KD------------------------------MNSKGVAPNSRTCNII 346
           ++ Y +L     KD                              M      PNS T + I
Sbjct: 491 ESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSI 550

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           L  L+ +G T E+  + + M+ K    +    T  +++    G  +KAF++   +  K +
Sbjct: 551 LAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGY 610

Query: 406 IPSMHTFSVLINGLCD-KGIVSDSCVLL 432
              M     LI  LC  + ++  S +LL
Sbjct: 611 SVKMEE---LIRYLCHCRKVIQGSKLLL 635


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 197/391 (50%), Gaps = 11/391 (2%)

Query: 90  QQNYEH--------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKY 141
           Q+ +EH        S+  Y+++++ L +  + +    L   M  +R  +V +F I++   
Sbjct: 30  QELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVISFNILVTGL 89

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDS 200
            R  K+E A+  F  M     + N+  ++ L+  LCK+  V +A E+ + MK R   PD 
Sbjct: 90  CRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDV 148

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+IL++G  K+  +  A E+ REM+D GC P++VTY  ++  LC+A RV +AL +++ 
Sbjct: 149 ITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 208

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C P    Y  L+       R++DA     +M   G   D+ +YN LI   CKA++
Sbjct: 209 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 268

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTM 379
                 +L+   S G+ P+  T + ++ GL      DEA R+   +  + C  D   Y+ 
Sbjct: 269 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYST 328

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C+ G++++AF +++ M        + T+S LI+GLC  G V ++ +LL  M+  G
Sbjct: 329 LIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             PS  T+  L K L      D    L E+M
Sbjct: 389 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 419



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 190/391 (48%), Gaps = 3/391 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +    E +V  Y+S+I+ L K  +     +L   M++     ++ T+  ++    R  K+
Sbjct: 2   RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKL 61

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
           E A+  F  M     + ++ +FN L++ LC++  +  A E F  M DR  P+  TYS+L+
Sbjct: 62  ERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K   + +A E+   M   GC+PD++TY I+VD LCK  +V  A  +++ M    C 
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 180

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+H      R+ DA+    +M   G   +V  Y  LI   CK  + K+   +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
           L DM  KG  P+    N+++NGL    + DE+  + RR +    + D  TY+ +I   C+
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 300

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              L++A ++  Y+K +   P +  +S LI+GLC  G V ++  L E M   G      T
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVT 360

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +  L   L K GR D    L  +M  +   P
Sbjct: 361 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPP 391



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 4/307 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPN 215
           M+ +G   N+  +N L+  LCK+    +AQE+F+ MK     P   TY+ LL+G  +   
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L RA  +F+EM+D   + D++++ I+V  LC+AG+++ AL   + MD   C P    YSV
Sbjct: 61  LERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSV 118

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+      NR+  AV+    M+  G   DV  Y  L+   CK +K    + VL++M   G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
             PN  T N +L+GL       +A  + R M  + C  +  TY  +I   C+ G ++ A 
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +   M  K   P +  +++LINGLC    V +S  LL   +  GI+P   T+  +   L
Sbjct: 239 AMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 298

Query: 455 IKEGRED 461
            +  R D
Sbjct: 299 CRSNRLD 305



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 183/366 (50%), Gaps = 6/366 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y  +I+ L K  +     +L+ +M+ +    +V T+ I++    +  KV  A    
Sbjct: 112 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVL 171

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G   NL  +N LL  LC+++ V  A  +   M  R   P+  TY  L++G  K 
Sbjct: 172 REMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKV 231

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  +M+D G  PD++ Y ++++ LCKA +VDE++ +++   S   +P    Y
Sbjct: 232 GRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTY 291

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S +++     NR+++A    L ++  G   DV +Y+ LI   CKA K    + + + M  
Sbjct: 292 SSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTG 351

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEK 392
            G   +  T + +++GL   G  DEA+ +  RM+++    +  TY  +IK  C    L++
Sbjct: 352 DGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDE 411

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL--LEDMIEKGIRPSGETFGKL 450
           A ++ + M+     PS  T+++LI+G+C    V DS  L   ++MI+ G+ P   T+  L
Sbjct: 412 AIELVEEMERSNCAPSAVTYNILIHGMCRMERV-DSAALDYFQEMIDNGVIPDHITYSIL 470

Query: 451 RKLLIK 456
            + L K
Sbjct: 471 LEGLKK 476



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 128/276 (46%), Gaps = 44/276 (15%)

Query: 96  SVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +V  Y ++I+ L K+ + +    ++ D+++   T  ++    + +++    +  +V+E++
Sbjct: 217 NVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM---IYNMLINGLCKADQVDESI 273

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW 210
                    G+  ++  ++ ++  LC+S  + +A  +   +K R  P D   YS L++G 
Sbjct: 274 ALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGL 333

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA---------------- 254
            K   +  A +++  M   GC+ D+VTY  ++D LCKAGRVDEA                
Sbjct: 334 CKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPST 393

Query: 255 -------------------LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA-VDTFL 294
                              + +V+ M+ + C P++  Y++L+H      R++ A +D F 
Sbjct: 394 MTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQ 453

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           EM  NG++ D   Y+ L+    K+     +  ++ D
Sbjct: 454 EMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLD 489



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 3/175 (1%)

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRK 140
           C      K +     V  Y ++I+ L K  +    +DL   M       +V T+  ++  
Sbjct: 308 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDG 367

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPD 199
             +  +V+EA      M + G   +   +N L+  LC   ++ +A E+ + M +    P 
Sbjct: 368 LCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPS 427

Query: 200 SKTYSILLEGWGKDPNLPRAR-EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           + TY+IL+ G  +   +  A  + F+EM+D G  PD +TY I+++ L K+  + E
Sbjct: 428 AVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHE 482


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 200/387 (51%), Gaps = 20/387 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVET--FC 135
           A  FF WA+ +  Y H+ ++Y SM+E L + R      + + ++  R++ ++ +E   F 
Sbjct: 95  ALQFFNWAQ-EMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFN 153

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            +MR + R    +E++  F +M+ +GV+ ++  FN LL+ L K      A++++D M   
Sbjct: 154 SLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLST 213

Query: 196 F--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +   PD+ T++IL+ G+  +  +     IF ++   GC PD+VTY  +VD LC+AG+V  
Sbjct: 214 YGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTV 273

Query: 254 ALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           A  +VK M   S    P    Y+ L+  Y  +  IE A+  F EM   G+ A+   YN L
Sbjct: 274 AYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTL 333

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGV-APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           I   C+A KF+ +  +L+     G  +P++ T N +++     G  D+A +VF RM +L 
Sbjct: 334 IKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELK 393

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-------PSMHTFSVLINGLCDK 422
            + D+ TY+ +++  CQGG  EKA  +   +  ++ +       P +  ++ +   LC+ 
Sbjct: 394 IQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCET 453

Query: 423 GIVSDSCVLLEDMIEKGIR--PSGETF 447
           G    +      ++ +G +  PS +T 
Sbjct: 454 GKTKKAEKAFRQLMRRGTQDPPSYKTL 480



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 163/341 (47%), Gaps = 17/341 (4%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF I++R +     V++    FN + ++G   ++  +N L+  LC++  V  A  +   M
Sbjct: 222 TFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGM 281

Query: 193 KDRFI---PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             + +   P+  TY+ L+ G+     + +A  +F EMV+ G   + +TY  ++  LC+A 
Sbjct: 282 GKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEAR 341

Query: 250 RVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           + ++   I++    D T   P +  ++ L+H +     ++DA+  F  M +  I  D A 
Sbjct: 342 KFEKIKDILEGTAGDGTFS-PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSAT 400

Query: 308 YNALIGAFCKANKFKNVYRVLKDM-------NSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           Y+AL+ + C+   ++    +L  +       +  G  P     N I   L   G+T +A 
Sbjct: 401 YSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAE 460

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           + FR++++    D  +Y  +I   C+ G  E  +++   M  K F P   T+  LINGL 
Sbjct: 461 KAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLL 520

Query: 421 --DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             DK +++     LE M+    RP+  TF  +   L+++GR
Sbjct: 521 HMDKPLLALQS--LEKMLRSSHRPNSSTFHSILAKLLEQGR 559



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 165/350 (47%), Gaps = 13/350 (3%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           +++    ++   +A+  FN  Q+ G T    ++  +L  L +++++  A+     ++ R 
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141

Query: 196 ---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
                 +++ ++ L+  + +      + ++F  M   G +P +VT+  ++ +L K GR +
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTN 201

Query: 253 EALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            A  +   M ST    P +F +++L+  + +   ++D    F ++ + G   DV  YN L
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTL 261

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGV--APNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
           +   C+A K    Y V+K M  K V   PN  T   ++ G   + E ++A  VF  M+ +
Sbjct: 262 VDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQ 321

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSD 427
             +A+  TY  +IK  C+  + EK   + +       F P   TF+ L++  C  G + D
Sbjct: 322 GLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDD 381

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQEKMNLL 473
           +  + E M E  I+P   T+  L + L + G     ED+L  L E+  LL
Sbjct: 382 ALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILL 431



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           +AA+N +   LC++   +KA++ F  +  R   D  +Y  L+ G  K+       E+   
Sbjct: 440 VAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVL 499

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP-TSFIYSVLVHTYGVEN 284
           M+     PD  TY  +++ L    +   AL  ++ M  +  RP +S  +S+L        
Sbjct: 500 MLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGR 559

Query: 285 RIEDAVDTFLEMEKN 299
             E A    L ++KN
Sbjct: 560 ASESASLIQLMLDKN 574


>gi|357131182|ref|XP_003567219.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Brachypodium distachyon]
          Length = 518

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 200/411 (48%), Gaps = 7/411 (1%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           T L++ G   S  +V   L + RN+   A   F WA  Q +Y     A HSM+  LAK R
Sbjct: 89  TLLERCGAAASETLVVAALSRLRNSWAAAHAAFLWAAAQPDYAPGRHACHSMLAILAKHR 148

Query: 112 QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           ++     L++ MR K + +     +++R+Y   + V  A+  F+ +  +G    +A F+G
Sbjct: 149 RFDDARALLDEMRRKSLASPRAVLLLVRRYCAARDVTRAIAAFHALPSFGFEPGVAQFHG 208

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-GKDPNLPRAREIFREMVDTG 230
           LLSALC+ KNV+ A+ +    +  F  ++K+++I+L GW     ++  A+  +  M   G
Sbjct: 209 LLSALCRYKNVQDAEHLLLSSEKEFPFETKSFNIVLNGWCNMVCSVREAKRFWTAMEVRG 268

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
              D+ +YG M+    KAG +D  L +   M      P   +Y+ +V+       +++A 
Sbjct: 269 IERDVASYGSMISCFSKAGSLDSVLKLFNGMKEAGIVPDRKVYNAVVYALAKGRCVDEAK 328

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
                ME+ G   D A YN+LIG  CKA + +   ++  +M  +G+  + RT + + +  
Sbjct: 329 ALVRSMEERGTPPDTATYNSLIGPLCKARQVQEATQMFDEMIGRGLLASVRTFHALFDVA 388

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                  E + V  +M  L CE + DTY M+I+ FC+  + +   K+W  M      P  
Sbjct: 389 T---SPSEVFDVLDKMKTLHCEPEIDTYIMLIRKFCRWRQHDSVEKLWSAMPTNGLNPDR 445

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             + VLI+GL   G + ++    E+M  KG  P  +T   ++  L   GRE
Sbjct: 446 SAYIVLIHGLFLNGKLEEAAKYYEEMKAKGFPPEQKTESMIQAWLT--GRE 494


>gi|356569552|ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 485

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/444 (29%), Positives = 215/444 (48%), Gaps = 15/444 (3%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           KS+  ++ ++    ++ +L  + I V+P  VE+VL+        A  FF+W+ +  N  H
Sbjct: 43  KSLCHLIATTSAASVEHSLQSAAISVTPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNH 102

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  +++ +++ L K R +  MWD + +M  + +L++ TF  +   Y    ++ EA+  F 
Sbjct: 103 TPYSWNLVVDILGKNRFFDAMWDAIKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFE 162

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +M  Y V +++ A N LLSA+C +     A +     K    PD+ TY+IL+EGW  +  
Sbjct: 163 IMDNYCVVRDVVALNSLLSAICSNGRTLDACDYLQVAKKLVRPDTDTYAILMEGWEGENG 222

Query: 216 LPRAREIFREMV-DTGCNP-DIVTYGIMVDVLCKAGR-VDEALGIVKSMDSTVCRP-TSF 271
           +  A+E F EMV + G +P ++  Y   +  L +    + EA+  V SM    C P   F
Sbjct: 223 VVGAKETFAEMVIEIGWDPLNVPAYDSFLCTLVRGPDGLLEAIKFVDSMRDRRCFPGVRF 282

Query: 272 IYSVL---VHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYR 326
           + + L   V ++ V        + F E+   G  +     MYN +IG  C         R
Sbjct: 283 LKAALDECVKSHDVRT-----AEFFWEVLVVGKVVQPTAEMYNLMIGLCCYRGDTDAARR 337

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFC 385
           +L +M  +G  P+  T N++   LI   +  EA  VF  M+K  C  + D     +K + 
Sbjct: 338 MLDEMVYQGAFPDVETYNLLFKFLIKGRKLREASVVFAEMVKNECVPEQDNCDAAVKAYV 397

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             GE   A KVWKY+          T + L+ GL D   + ++    EDMI++ IR S  
Sbjct: 398 DCGEPVMAIKVWKYLVENYKKDLERTANFLVVGLRDLNRLPEAVKYAEDMIDREIRLSSN 457

Query: 446 TFGKLRKLLIKEGREDVLKFLQEK 469
           T  KLR+ LIKE RE V + L  K
Sbjct: 458 TMSKLRQSLIKERREFVYEDLLRK 481


>gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa]
 gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 206/433 (47%), Gaps = 21/433 (4%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNA---GTLAFCFFKWA-EKQQNYEHSVRAYH 101
           P  +L TA            VE+VL +   A   G  A  FFK++   Q ++  S  ++ 
Sbjct: 66  PPTLLTTAF-----------VENVLGRLFAAHSNGLKALEFFKYSLNNQTHFSPSPDSFE 114

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
             +  LA++R +   WDL+  +      +L +++  I++ K A+ +  EE +  F  M+K
Sbjct: 115 KTLHILARMRYFDKAWDLMVEIGKTHPFLLTLKSMSIMLCKIAKFRSYEETLDAFEKMEK 174

Query: 160 ---YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
               G    +  FN LL A C  + +++A+ +F  M +RF P+ KT +ILL G+ +  ++
Sbjct: 175 RVFVGRKFGVEEFNVLLRAFCTVRKLKEAKSVFVKMHERFPPNVKTMNILLLGFKESRDV 234

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
                 + EMV  G  P   +YGI +D  CK G   +AL I + M+   C PT    + L
Sbjct: 235 TAMELFYHEMVKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTL 294

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H  GV      A + F E+ K  + AD   YNALI +  K  + K+  +++ +M    +
Sbjct: 295 IHGAGVARNAMKARELFDEIPKRNLQADTGAYNALISSLVKCREVKSAIQLMDEMEKNNI 354

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
             +  T + +  GL+  G  +    ++ +MI +       T  M++K FC   +++    
Sbjct: 355 HYDDMTYHTMFLGLMKSGSIEGVCELYHKMIDRNFVPKTRTVVMLMKFFCVNSQIDLGLN 414

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +W Y+  K + P  H   +L+ GLC +G   ++    +  +E+GI  S   +G L + L+
Sbjct: 415 LWGYLVGKGYCPHHHALDLLVTGLCSRGRSHEAFKCSKQSLERGIHVSEAVYGMLERFLL 474

Query: 456 KEGREDVLKFLQE 468
           +    D L  L +
Sbjct: 475 QSNMTDKLGELNQ 487


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 223/450 (49%), Gaps = 18/450 (4%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMI 104
           SP   L   LD++GI   P ++  V ++F ++  L    F WA+ +  +    + + +++
Sbjct: 106 SPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLFDAVV 165

Query: 105 ESLAKIRQYQIMWDLV---------NAMRTKRMLNVETFCIIMRKYAR--VQKVEEAVYT 153
            +LAK R++   W LV              +R+++V TF I++R+YAR  + K+    Y 
Sbjct: 166 NALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYE 225

Query: 154 FNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLE 208
           F    K  V     ++    L+ +LCK  +VR+A E F   K+    ++P  + Y+I+L 
Sbjct: 226 FATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLN 285

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           GW +   L +   ++ EM +    P +VTYG +V+  C+  RV++AL +V  M      P
Sbjct: 286 GWFRLRKLKQGERLWAEMKEN-MRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAP 344

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            + +Y+ ++       R ++A+          I    + YN+L+  FCKA       ++L
Sbjct: 345 NAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKIL 404

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQG 387
           K M S+G  P++ T N          + +E   ++ ++I+     D  TY +++KM C+ 
Sbjct: 405 KMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEE 464

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            +L+ A +V K M+   +   + T ++L++ LC    + ++ V  EDMI +GI P   TF
Sbjct: 465 EKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTF 524

Query: 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            +++  L K+G  ++ + L + M+ +   P
Sbjct: 525 QRMKADLKKQGMTEMAQKLCKLMSSVPYSP 554


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 39/420 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +I++  K    +   DL+  M     + +V T+  +M    +  +VEEA+  FN M+
Sbjct: 83  YNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEME 142

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLP 217
           + G T N  + N ++  LC+   + +A ++F  M+ R IP DS +Y IL++G  K   L 
Sbjct: 143 RLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLN 202

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++FR M+D+G  P  VTY +++  +C A  +DEAL + KSM S  CRP+ F +++L+
Sbjct: 203 EAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILI 262

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMY----------------------------- 308
             +    ++++A      M  +G + DV  Y                             
Sbjct: 263 DAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322

Query: 309 ------NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
                 N LI   CKA + K    VL  M S G +P+  T N +++G    G+T+ A  +
Sbjct: 323 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 382

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M+ +    +  TYT ++   C+   L +A  V+  MK     P++ T++ LI G C 
Sbjct: 383 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS 442

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMNLLVKEPLCD 480
            G V     L  +M+  GI P    +G L   L K GR    L+ L+E    L  E   D
Sbjct: 443 AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGD 502



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 176/329 (53%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++ I++   A+  K+ +A   F  +   GVT +  A+  L+  LC + +   A+E+F  M
Sbjct: 12  SYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 193 KDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R  P S  TY+++++   K   L  A ++ ++M++ G  PD+VTY  ++D LCK+GRV
Sbjct: 72  NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +EAL +   M+   C P    ++ ++     +++I+ A   F EME   I  D   Y  L
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGIL 191

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I    KA K    Y++ + M   G+ P++ T N++++G+      DEA  +F+ M  K C
Sbjct: 192 IDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                T+ ++I   C+ G++++AF++ K M     +P + T+S LI+GLC    V D+  
Sbjct: 252 RPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LLEDM+++  +P+  T   L   L K GR
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGR 340



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 143/272 (52%), Gaps = 2/272 (0%)

Query: 192 MKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
           M +R + PDS +Y IL++G  K   L  AR++F++++ +G  P  V Y  ++  LC A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
            D+A  +   M+   C P+   Y+V++        +E+A D   +M ++G + DV  YN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKL 369
           ++   CK+ + +    +  +M   G  PN R+ N I+ GL  + + D+A +VF  M  + 
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              D+ +Y ++I    + G+L +A+K+++ M      PS  T++V+I+G+C    + ++ 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            L + M  KG RPS  TF  L     K G+ D
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMD 272



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 168/380 (44%), Gaps = 6/380 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y  +I+ LAK  +    + L   M    +  +  T+ +++        ++EA+  F  M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G   +   FN L+ A CK   + +A  +   M D   +PD  TYS L+ G      +
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             AR +  +MV   C P +VT   ++  LCKAGR+ EA  ++ +M S+   P    Y+ L
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 366

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           VH +    + E A +   +M   G+  +V  Y AL+   CKAN+      V   M S G 
Sbjct: 367 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC 426

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           APN  T   ++ G    G+ D   ++F  M+      D   Y  +    C+ G   +A +
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE 486

Query: 396 VWKYMK--LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           + +  +  L+        +   ++GL D G +  +   + DM+  G  P+ E    L   
Sbjct: 487 ILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAG 546

Query: 454 LIKEGR-EDVLKFLQEKMNL 472
           L K G+  +    L+E M+L
Sbjct: 547 LCKSGQGGEARAVLEEIMDL 566


>gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa]
 gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 218/431 (50%), Gaps = 8/431 (1%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           K + +I+ ++P   +++ LD + IRV    VE VL+   ++   A  FF+WA  Q N +H
Sbjct: 53  KLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPGSAVKFFRWAGLQLNDKH 112

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           S  +++ +++ L K   +  MW  + +M+ + ++++ TF  +   Y  V +V+EA+ TF 
Sbjct: 113 SPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASVFSSYVIVDRVKEAIMTFE 172

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           VM +YG T+N+ A N LLSA+C+      A E     K+R +PD+ +Y+ILLEGW K+ N
Sbjct: 173 VMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRILPDADSYAILLEGWEKEMN 232

Query: 216 LPRAREIFREMVD-TGCNP-DIVTYGIMVDVLCKA-GRVDEALGIVKSMDSTVCRPTSFI 272
           +  AR  F +MV   G +P ++  Y   +  L      + EA+    +M    C P    
Sbjct: 233 VASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMGYDGLREAMKHFDTMKDRGCFPGVKF 292

Query: 273 YSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           + + +      N +  A+  +  +  + G   D+ +YN +IG  C  N+     + L +M
Sbjct: 293 FRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMIGIHCYDNQTDIANKFLDEM 352

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGEL 390
              GV P+S+T N++   LI   +  EA  V   MIK     +       IK +    E 
Sbjct: 353 IYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFFPNKTNCNAAIKAYMDSKEP 412

Query: 391 EKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
             A KVWK M ++ +  S      ++L+  L    +V ++    E MIEKGI+ +  +  
Sbjct: 413 YMAIKVWKCM-MENYGESDLEEAGNMLVVELRYHHMVPEAVKYAEVMIEKGIKLTSSSLS 471

Query: 449 KLRKLLIKEGR 459
           KL+++L +E +
Sbjct: 472 KLKQMLNEEKK 482


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 177/325 (54%), Gaps = 2/325 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++ +I+  Y +V+++ + +     +Q+ G+  N   +N ++S LCK+  V +A+++ 
Sbjct: 286 DVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVL 345

Query: 190 DCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK+ R  PD+  Y+ L+ G+GK  N+    ++F EM      PD VTY  M+  LC+A
Sbjct: 346 RVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQA 405

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+V EA  +   M S   +P    Y+ L+  Y     +++A     +M + G+  +V  Y
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
            AL+   CK  +      +L +M+ KG+ PN  T N ++NGL   G  ++A ++   M +
Sbjct: 466 TALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDL 525

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TYT ++  +C+ GE+ KA ++ + M  K   P++ TF+VL+NG C  G++ D
Sbjct: 526 AGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLED 585

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRK 452
              L++ M++KGI P+  TF  L K
Sbjct: 586 GERLIKWMLDKGIMPNATTFNSLMK 610



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 184/375 (49%), Gaps = 6/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
            Y+S+I  L K  +      ++  M+ +R+   NV  +  ++  + +   V      F+ 
Sbjct: 324 TYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNV-VYTTLISGFGKSGNVSVEYKLFDE 382

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M++  +  +   +  ++  LC++  V +A+++F  M  + + PD  TY+ L++G+ K   
Sbjct: 383 MKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGE 442

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +  +MV+ G  P++VTY  +VD LCK G VD A  ++  M     +P    Y+ 
Sbjct: 443 MKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNA 502

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++       IE AV    EM+  G   D   Y  ++ A+CK  +    + +L+ M  KG
Sbjct: 503 LINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKG 562

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           + P   T N+++NG    G  ++  R+ + M+ K    +A T+  ++K +C    +    
Sbjct: 563 LQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATI 622

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +++K M  +  +P  +T+++LI G C    + ++  L ++M+EKG   +  ++  L K  
Sbjct: 623 EIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGF 682

Query: 455 IKEGR-EDVLKFLQE 468
            K  + E+  K  +E
Sbjct: 683 YKRKKFEEARKLFEE 697



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 164/323 (50%), Gaps = 6/323 (1%)

Query: 142 ARVQKVEEAVYT-FNVMQKY---GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF- 196
           AR+    + + T F V ++Y   GV  N  ++N +L  LC+   V++A  +   M+ R  
Sbjct: 224 ARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGN 283

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +PD  +YS++++G+ +   L +  ++  E+   G  P+  TY  ++  LCK GRV EA  
Sbjct: 284 VPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQ 343

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++ M +    P + +Y+ L+  +G    +      F EM++  I+ D   Y ++I   C
Sbjct: 344 VLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLC 403

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           +A K     ++  +M SKG+ P+  T   +++G    GE  EA+ +  +M+ K    +  
Sbjct: 404 QAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVV 463

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TYT ++   C+ GE++ A ++   M  K   P++ T++ LINGLC  G +  +  L+E+M
Sbjct: 464 TYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523

Query: 436 IEKGIRPSGETFGKLRKLLIKEG 458
              G  P   T+  +     K G
Sbjct: 524 DLAGFFPDTITYTTIMDAYCKMG 546



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 129/287 (44%), Gaps = 37/287 (12%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I+   K  + +  + L N M  K +  NV T+  ++    +  +V+ A    + M
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
            + G+  N+  +N L++ LCK  N+ +A ++ + M    F PD+ TY+ +++ + K   +
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+ R M+D G  P IVT+ ++++  C +G +++   ++K M      P +  ++ L
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADV------------------------------- 305
           +  Y + N +   ++ +  M   G++ D                                
Sbjct: 609 MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 306 ----AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
               A YN+LI  F K  KF+   ++ ++M + G        +I ++
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVD 715


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 202/405 (49%), Gaps = 36/405 (8%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I SL+K  +      L+  M     + + ETF  ++    +  ++ EA    N M 
Sbjct: 249 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 308

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQE-----------IFDCMKDRFI---------- 197
             G T +   +  L++ LCK   V  A++           IF+ +   F+          
Sbjct: 309 IRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKA 368

Query: 198 ------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
                       PD  TY+ L+ G+ K   +  A E+ R+M + GC P++ +Y I+VD  
Sbjct: 369 VLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGF 428

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK G++DEA  ++  M +   +P +  ++ L+  +  E+RI +AV+ F EM + G   DV
Sbjct: 429 CKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDV 488

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             +N+LI   C+ ++ K+   +L+DM S+GV  N+ T N ++N  + RGE  EA ++   
Sbjct: 489 YTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNE 548

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+ +    D  TY  +IK  C+ GE++KA  +++ M     +PS  + ++LINGLC  G+
Sbjct: 549 MVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGM 608

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           V ++    ++M+ +G  P   TF  L   L + GR ED L   ++
Sbjct: 609 VEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRK 653



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 167/338 (49%), Gaps = 2/338 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++  Y +   V  A+     M+  G   N+ ++  L+   CK   + +A  + 
Sbjct: 382 DVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLL 441

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M  D   P++  ++ L+  + K+  +P A EIFREM   GC PD+ T+  ++  LC+ 
Sbjct: 442 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 501

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +  AL +++ M S      +  Y+ L++ +     I++A     EM   G L D   Y
Sbjct: 502 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITY 561

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N+LI   C+A +      + + M   G+ P+S +CNI++NGL   G  +EA    + M+ 
Sbjct: 562 NSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVL 621

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           +    D  T+  +I   C+ G +E    +++ ++ +   P   T++ L++ LC  G V D
Sbjct: 622 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYD 681

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +C+LL++ IE G  P+  T+  L + L+ +   D   F
Sbjct: 682 ACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLDRRTF 719



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 198/416 (47%), Gaps = 43/416 (10%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E + ++Y+ ++E L     +++  ++   M ++++   + TF ++M+    V +V+ A+ 
Sbjct: 173 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALS 232

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
               M K+G   N   +  L+ +L K   V +A ++ + M     +PD++T++ ++ G  
Sbjct: 233 VLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 292

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   +  A ++   M+  G  PD +TYG +++ LCK GRVD A    K +   + +PTS 
Sbjct: 293 KFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAA----KDLFYRIPKPTSV 348

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           I++ L+H +    R++DA     +M  + GI+ DV  YN+LI  + K         VL+D
Sbjct: 349 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRD 408

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAY------------------------------ 360
           M +KG  PN  +  I+++G    G+ DEAY                              
Sbjct: 409 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHR 468

Query: 361 -----RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
                 +FR M  K C+ D  T+  +I   C+  E++ A  + + M  +  + +  T++ 
Sbjct: 469 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 528

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LIN    +G + ++  L+ +M+ +G      T+  L K L + G  D  + L EKM
Sbjct: 529 LINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 169/393 (43%), Gaps = 44/393 (11%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKY 141
            F W   Q+ Y HS   Y  +I  L    +++ +  L+  M+ + ++  E+ F  IMR Y
Sbjct: 91  LFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDY 150

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
            +                       A F G  + L     + + + ++ C      P  K
Sbjct: 151 DK-----------------------AGFPGQTTRL-----MLEMRNVYSCE-----PTFK 177

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           +Y+++LE          A  +F +M+     P + T+G+++  LC    VD AL +++ M
Sbjct: 178 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDM 237

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C P S IY  L+H+    NR+ +A+    EM   G + D   +N +I   CK ++ 
Sbjct: 238 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 297

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381
               +++  M  +G  P+  T   ++NGL   G  D A  +F R+ K     +  +  +I
Sbjct: 298 NEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PTSVIFNTLI 354

Query: 382 KMFCQGGELEKAFKVWKYMKLKR-FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             F   G L+ A  V   M      +P + T++ LI G   KG+V  +  +L DM  KG 
Sbjct: 355 HGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGC 414

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           +P+  ++  L     K G+ D      E  NLL
Sbjct: 415 KPNVYSYTILVDGFCKLGKID------EAYNLL 441



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 157/330 (47%), Gaps = 22/330 (6%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGI-----RVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           LD AK++   M++S  +V D     S I     +    +  +VL   RN G         
Sbjct: 363 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGC-------- 414

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145
                  + +V +Y  +++   K+ +    ++L+N M    +  N   F  ++  + +  
Sbjct: 415 -------KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEH 467

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYS 204
           ++ EAV  F  M + G   ++  FN L+S LC+   ++ A  +  D + +  + ++ TY+
Sbjct: 468 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 527

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+  + +   +  AR++  EMV  G   D +TY  ++  LC+AG VD+A  + + M   
Sbjct: 528 TLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 587

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P+S   ++L++       +E+AV+   EM   G   D+  +N+LI   C+A + ++ 
Sbjct: 588 GLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 647

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
             + + + ++G+ P++ T N +++ L   G
Sbjct: 648 LTMFRKLQAEGIPPDTVTYNTLMSWLCKGG 677


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 234/483 (48%), Gaps = 24/483 (4%)

Query: 6   HSRNKMISGCIS--FLRRYNSSEPSTEALDAAKSISKIMLSS--PKVVLDTALDQSGIRV 61
           H   + IS  IS  F       EPS++A    + IS++++++  P   ++++L  +GI +
Sbjct: 14  HQLRRRISTIISAGFTLNLPKLEPSSDA----ELISQMLITNHNPFHFMESSLQLNGISL 69

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121
           +P ++   L + R+   +A  FF++     +   +  +++ +I+ L ++RQ+ ++  L+ 
Sbjct: 70  TPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIV 129

Query: 122 AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKS 179
            M      + ETF I++++        +AV  F+    +   +   L  F  LL  LCK 
Sbjct: 130 EMDQT---SPETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKY 186

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
              + A  +F+  K+ F  D K Y+IL+ GW K   +  A +   EM+++G  P++VTY 
Sbjct: 187 GYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYN 246

Query: 240 IMVDVLCKAG----------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           ++++ +C+             V  A  +   M      P    +S+++H Y   ++ E  
Sbjct: 247 VLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELT 306

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +D    M+  GI   +  Y +++   C   + +    +L+ M   G++P+S T N     
Sbjct: 307 LDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKE 366

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
             GR + + A  ++R+M   LC+    TY +++  F   G++E   ++W  +K     P 
Sbjct: 367 YKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPD 426

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           + +++ L++GLC K    ++C    +MIE+G  P   TF  L K LI+  +    + L++
Sbjct: 427 LDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKK 486

Query: 469 KMN 471
           K++
Sbjct: 487 KLD 489



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 97/209 (46%), Gaps = 1/209 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V +F I++  Y+R  K E  +    +M+  G++  +  +  ++  LC    + +A+E+ 
Sbjct: 286 DVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELL 345

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M +  I P S TY+   + +    +   A  ++R+M +  C P   TY +++      
Sbjct: 346 ETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINL 405

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+++    I   + ++   P    Y+ LVH    + + ++A   F+EM + G L     +
Sbjct: 406 GKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTF 465

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             L     ++NK +   R+ K ++ + + 
Sbjct: 466 ETLYKGLIQSNKMRTWRRLKKKLDEESIT 494


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 196/420 (46%), Gaps = 39/420 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ MI++  K    +   DL+  M     + +V T+  +M    +  +VEEA+  FN M+
Sbjct: 83  YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEME 142

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLP 217
           + G T N  + N ++  LC+   + +A ++F  M+ + IP DS +Y IL++G  K   L 
Sbjct: 143 RLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLN 202

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++F+ M+D+G  P  VTY +++  +C A  +DEAL + KSM S  CRP+ F +++L+
Sbjct: 203 EAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILI 262

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMY----------------------------- 308
             +    ++++A      M  +G + DV  Y                             
Sbjct: 263 DAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322

Query: 309 ------NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
                 N LI   CKA + K    VL  M S G +P+  T N +++G    G+T+ A  +
Sbjct: 323 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 382

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M+ +    +  TYT ++   C+   L +A  V+  MK     P++ T++ LI G C 
Sbjct: 383 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS 442

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMNLLVKEPLCD 480
            G V     L  +M+  GI P    +G L   L K GR    L+ L+E    L  E   D
Sbjct: 443 AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGD 502



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 175/329 (53%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++ I++   A+  K+ +A   F  +   GVT +  A+  L+  LC + +   A+E+F  M
Sbjct: 12  SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 193 KDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R  P S  TY+++++   K   L  A ++ ++M++ G  PD+VTY  ++D LCK+ RV
Sbjct: 72  NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 131

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +EAL +   M+   C P    ++ ++     +++I+ A   F EME   I  D   Y  L
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGIL 191

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I    KA K    Y++ + M   G+ P++ T N++++G+      DEA  +F+ M  K C
Sbjct: 192 IDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                T+ ++I   C+ G+L++AF++ K M     +P + T+S LI+GLC    V D+  
Sbjct: 252 RPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LLEDM+++  +P+  T   L   L K GR
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGR 340



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 168/380 (44%), Gaps = 6/380 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y  +I+ LAK  +    + L   M    +  +  T+ +++        ++EA+  F  M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G   +   FN L+ A CK   + +A  +   M D   +PD  TYS L+ G      +
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             AR +  +MV   C P +VT   ++  LCKAGR+ EA  ++ +M S+   P    Y+ L
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 366

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           VH +    + E A +   +M   G+  +V  Y AL+   CKAN+      V   M S G 
Sbjct: 367 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC 426

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           APN  T   ++ G    G+ D   ++F  M+      D   Y  +    C+ G   +A +
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE 486

Query: 396 VWKYMK--LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           + +  +  L+        +   ++GL + G +  +   + DM+  G  P+ E    L   
Sbjct: 487 ILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAG 546

Query: 454 LIKEGR-EDVLKFLQEKMNL 472
           L K G+  +    L+E M+L
Sbjct: 547 LCKSGQGGEARAVLEEIMDL 566



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGE 389
           MN + V+P+S +  I+++GL   G+ ++A  +F++++      +   YT +I   C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            + A +++  M  +   PS  T++V+I+  C +G++ ++C L++ MIE G  P   T+  
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 450 LRKLLIKEGR-EDVLKFLQE 468
           +   L K  R E+ L    E
Sbjct: 121 VMDGLCKSSRVEEALLLFNE 140


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 186/399 (46%), Gaps = 38/399 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ +I    K+ +    + L+  M+   +  NV T+  ++  + R  KV+ A   F  M
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQM 103

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-------------------- 197
            + G   NL  +N LLS LC++  + +A E+ D M++R +                    
Sbjct: 104 VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 163

Query: 198 ----------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
                           PD   YS L+ G  K   L  A ++F +M +  C PD+VT+  +
Sbjct: 164 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTAL 223

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +D LCK  R+ EA  ++++M+   C P    YS L+       ++ DA + F  M   GI
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             +V  YN+LI  FC  N   +   ++++M + G  P+  T N +++GL   G   EA R
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 343

Query: 362 VFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +F  M  K C  D  TY+ +I  FC+   ++ A  ++  M  +  +P + TFS L+ G C
Sbjct: 344 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 403

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           + G+V D+  LLE+M+     P   T+  L     K GR
Sbjct: 404 NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 442



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 194/387 (50%), Gaps = 5/387 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           + +N   +V  Y S+I+ L K  Q +   ++   M  + +  NV T+  ++  +     V
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           + A+     M   G   ++  +N L+  LCK+    +A  +F  MK +F  PD  TYS L
Sbjct: 304 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCL 363

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  AR +F +M+     PD+VT+  +V+  C AG VD+A  +++ M ++ C
Sbjct: 364 IGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDC 423

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  + Y+ LV  +    R+ +A      M K G   +V  Y ALI AFC+A K    Y+
Sbjct: 424 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYK 483

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMF 384
           +L++M   GV PN  T   ++ G  G G+ +EA ++  R+ +   C+AD   Y +M+   
Sbjct: 484 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGL 543

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPS 443
           C+ G +  A ++ + +K     P    +  LI GLC    +  +  +LE+M + +  RP+
Sbjct: 544 CRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPN 603

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
            E +  + + L +EGR +    L +++
Sbjct: 604 AEAYEAVIQELAREGRHEEANALADEL 630



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 161/332 (48%), Gaps = 2/332 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+ I++    +  ++ EA   F  M+K G   N   +N L++  CK   V +A  + 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK+    P+  TYS ++ G+ +   +  A ++FR+MV+ GC P++VTY  ++  LC+ 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +DEA  ++  M     +P  F Y  L+       +I+ A+  F +        DV  Y
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           + LI   CK  +     ++ + M      P+  T   +++GL       EA +V   M  
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  +  TY+ +I   C+ G++  A +V+K M ++   P++ T++ LI+G C    V  
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           + +L+E+M   G  P   T+  L   L K GR
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 159/308 (51%), Gaps = 3/308 (0%)

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREI 222
           +N+  +  ++  LCK+  + +A   F  MK +  +P+  TY++L+ G+ K   + RA  +
Sbjct: 5   KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLL 64

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
            +EM ++G  P++VTY  ++   C+  +VD A  + + M    C P    Y+ L+     
Sbjct: 65  LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 124

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
              +++A +   EM + G+  D   Y+ L+   CK  K     +V +D ++    P+   
Sbjct: 125 NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA 184

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            + ++ GL   G  DEA ++F +M +  CE D  T+T ++   C+G  L++A +V + M+
Sbjct: 185 YSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME 244

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-RKLLIKEGRE 460
            +   P++ T+S LI+GLC  G V D+  + + MI +GI P+  T+  L     +  G +
Sbjct: 245 DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 304

Query: 461 DVLKFLQE 468
             L  ++E
Sbjct: 305 SALLLMEE 312



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C  +++T+ IM+D LCKA R+ EA      M      P  + Y+VL++ +   +++  A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               EM+++G+  +V  Y+ +I  FC+  K    Y++ + M   G  PN  T N +L+GL
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G  DEAY +   M  +  + D  +Y  ++   C+ G+++ A KV++        P +
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
             +S LI GLC  G + ++C L E M E    P   TF  L   L K  R      LQE 
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR------LQEA 236

Query: 470 MNLL 473
             +L
Sbjct: 237 QQVL 240


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 186/398 (46%), Gaps = 38/398 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +I    K+ +    + L+  M+   +  NV T+  ++  + R  KV+ A   F  M 
Sbjct: 164 YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 223

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--------------------- 197
           + G   NL  +N LLS LC++  + +A E+ D M++R +                     
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 283

Query: 198 ---------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                          PD   YS L+ G  K   L  A ++F +M +  C PD+VT+  ++
Sbjct: 284 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALM 343

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D LCK  R+ EA  ++++M+   C P    YS L+       ++ DA + F  M   GI 
Sbjct: 344 DGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            +V  YN+LI  FC  N   +   ++++M + G  P+  T N +++GL   G   EA R+
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRL 463

Query: 363 FRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  M  K C  D  TY+ +I  FC+   ++ A  ++  M  +  +P + TFS L+ G C+
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 523

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            G+V D+  LLE+M+     P   T+  L     K GR
Sbjct: 524 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 195/385 (50%), Gaps = 10/385 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKRMLNVETFCIIM 138
           A  FF WA KQQ ++H+V  Y+ + E+L + R+  +    L N        NV T+ +++
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF---DCMKDR 195
           +   +   +++A      M++ G   + A +N ++ ALCK++N  KA + F   +C K+ 
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNV 126

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
                 T++I+++G  K   LP A   F +M   G  P+  TY ++++  CK  +V  A 
Sbjct: 127 I-----TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 181

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++K M  +   P    YS ++H +  + +++ A   F +M +NG + ++  YN L+   
Sbjct: 182 LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 241

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           C+       Y +L +M  +G+ P+  + + ++ GL   G+ D A +VF       C  D 
Sbjct: 242 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 301

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y+ +I   C+ G L++A K+++ M+     P + TF+ L++GLC    + ++  +LE 
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 361

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR 459
           M ++   P+  T+  L   L K G+
Sbjct: 362 MEDRNCTPNVITYSSLIDGLCKTGQ 386



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 194/387 (50%), Gaps = 5/387 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           + +N   +V  Y S+I+ L K  Q +   ++   M  + +  NV T+  ++  +     V
Sbjct: 363 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 422

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           + A+     M   G   ++  +N L+  LCK+    +A  +F  MK +F  PD  TYS L
Sbjct: 423 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCL 482

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  AR +F +M+     PD+VT+  +V+  C AG VD+A  +++ M ++ C
Sbjct: 483 IGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDC 542

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  + Y+ LV  +    R+ +A      M K G   +V  Y ALI AFC+A K    YR
Sbjct: 543 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYR 602

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMF 384
           +L++M   GV PN  T   ++ G  G G+ +EA ++  R+ +   C+AD   Y +M+   
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGL 662

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPS 443
           C+ G +  A ++ + +K     P    +  LI GLC    +  +  +LE+M + +  RP+
Sbjct: 663 CRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPN 722

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
            E +  + + L +EGR +    L +++
Sbjct: 723 AEAYEAVIQELAREGRHEEANALADEL 749



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
           ++ G   N+  +N L  AL +++ + +   I  +       P+  TY+++++G  K  +L
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+  EM ++G  PD   Y  ++  LCKA    +AL   +SM+   C      ++++
Sbjct: 76  DKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME---CEKNVITWTIM 132

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +      NR+ +A   F +M+K G + +   YN LI  FCK +K    Y +LK+M   G+
Sbjct: 133 IDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGL 192

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
           APN  T + +++G   + + D AY++FR+M++  C  +  TY  ++   C+ G +++A++
Sbjct: 193 APNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYE 252

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +   M+ +   P   ++  L+ GLC  G +  +  + ED       P    +  L   L 
Sbjct: 253 LLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLC 312

Query: 456 KEGREDVLKFLQEKMNLLVKEP 477
           K GR D    L EKM     EP
Sbjct: 313 KAGRLDEACKLFEKMRENSCEP 334


>gi|449451922|ref|XP_004143709.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Cucumis sativus]
 gi|449520004|ref|XP_004167024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Cucumis sativus]
          Length = 504

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 214/455 (47%), Gaps = 25/455 (5%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPE------IVEDVLEKFRNA--- 76
            PS+++    + I+KI+   P    D  L  + + + P        + DVL +   A   
Sbjct: 32  HPSSKSTTEIERIAKIINDHP--FPDQPLHPTLLHLIPSPLPSNTFLNDVLGQLFAAHSN 89

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETF 134
           G  A  FFK+         +  A+   +  L+++R +   W+L+  +R     +L +++ 
Sbjct: 90  GLKALEFFKFCLHHSQAPPTSDAFEKTLHILSRMRYFDQSWELMREIRQTHPFLLTLKSM 149

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQ-------KYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
            I++ + A+    EE +  F  M+       K+G  +    FN LL A C  + +++A+ 
Sbjct: 150 SILLSRIAKFLSFEETIEAFQRMENEVFVGRKFGTEE----FNVLLRAFCTQRQMKEARS 205

Query: 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +F  M  RF P+ KT ++LL G+ +  ++      + EM+  G  P+ VTY I +D  CK
Sbjct: 206 VFHKMYSRFPPNIKTINLLLLGFKESSDITSVELFYHEMIKRGFKPNAVTYSIRIDAYCK 265

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G   + L + K M+   C PT    + L+H  G+      A   F E+    +  D+  
Sbjct: 266 KGCFVDGLRVFKEMERAKCEPTLETITTLIHGAGIVKDKTKARQLFDEIPLRNLCPDIGA 325

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YNALI +  ++   K+   V++DM +K +  +S T +++ +GLI   +    Y ++ +M+
Sbjct: 326 YNALISSLIRSGDVKSAASVMEDMEAKHIEHDSVTYHMMFSGLIRLEDVGGFYELYIKMV 385

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            +       T  M++K FC+   ++     W Y+  K + P  H   +L+ GLC +G+V 
Sbjct: 386 GRNFVPKTRTAVMIMKFFCENRRVDLGLGFWAYLVEKGYCPHSHVLDLLVTGLCARGMVL 445

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +    + M+E+G + S   F  + + L+K    D
Sbjct: 446 QAFECSKQMLERGRQMSEAAFLIMERCLLKAHATD 480


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 180/363 (49%), Gaps = 3/363 (0%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKY 141
           FF+WA  Q +Y H   +Y+ ++E LAK  +   ++   N M     + N  T+  ++R  
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDS 200
            + Q+ EEA   F  M   G + N+ +++ L++ LC+ + V +A E+ + M D    P+ 
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY  LL G  K   L  A ++F  MV  GC PD V Y +++D   K G + EA  + + 
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C PT F Y+ L+  +  +         F +M + G + ++  +N L+  FCK   
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
               +R+  +M S G  P+  + N ++ G+  +G+  EA R+ R MI+     D  +Y +
Sbjct: 243 MVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNI 302

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I  + + G L+ A K++  +      P   ++S +I+ LC  G V  + V+ +DMI  G
Sbjct: 303 LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG 362

Query: 440 IRP 442
             P
Sbjct: 363 SAP 365



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 1/270 (0%)

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           +Y+ LLE   K          + +M+  GC P+  TYG ++  LC+A R +EA  + + M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +  C P  F YS+L+       ++++A +   EM   G   +V  Y +L+   CK  K 
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMM 380
           K    +   M  +G  P+    N++++G   +G+  EAYR+F  M+ K C     TY  +
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  F + GE  +   ++K M  +  +P++ TF+ L++G C  G + ++  L  +M   G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P   ++  L + +  +G+    + L  +M
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREM 288



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 160/332 (48%), Gaps = 5/332 (1%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            ++ +V  Y S++  L K+ + +   DL + M  +    +   + +++  +++   + EA
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEG 209
              F  M + G    +  +N LLS   +     + Q +F D ++   +P+  T++ LL+G
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K  ++  A  +F EM   GC PD+V+Y  ++  +C  G+  EA  +++ M  +   P 
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y++L+  Y     ++ A+  F E+ K+G+  D   Y+ +I   C+A K    + V K
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGE-TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
           DM + G AP++     ++ GL  RGE   E+  +F+ M+K  C      Y +++   C+ 
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLC-RGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA 415

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
              +   +++  +  + F P +    V++  L
Sbjct: 416 KRSDDVCEIFHELTERGFSPDVEISKVILETL 447



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 1/228 (0%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           N   ++Y  +++VL K+GR D   G    M +  C P ++ Y  L+ +     R E+A  
Sbjct: 14  NHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARS 73

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F  M   G   +V  Y+ LI   C+  K      +L +M   G  PN  T   +L+GL 
Sbjct: 74  VFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLC 133

Query: 352 GRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G+  EA  +F RM+ + C  D   Y ++I  F + G++ +A+++++ M  K  IP++ 
Sbjct: 134 KMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           T++ L++G   KG       L +DM+ +G  P+  TF  L     K G
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 128/266 (48%), Gaps = 2/266 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+S++   ++  ++  +  L   M R   + N+ TF  ++  + ++  + EA   F
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
             M+  G   ++ ++N L+  +C      +AQ +  + ++    PD  +Y+IL++G+ K 
Sbjct: 251 LEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A ++F E+  +G  PD  +Y  ++D LC+AG+V  A  + K M +    P + + 
Sbjct: 311 GALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             LV       R+ ++ + F  M K   +  +  YN L+   CKA +  +V  +  ++  
Sbjct: 371 IPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTE 430

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEA 359
           +G +P+     +IL  L    + D A
Sbjct: 431 RGFSPDVEISKVILETLRRSDDKDAA 456


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 209/426 (49%), Gaps = 9/426 (2%)

Query: 51   DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
            +TAL++   +++  +V  VL+  RN G  A  FF WA  Q+ Y H     + ++++L ++
Sbjct: 799  ETALERFTGKLTTTVVGKVLQGVRN-GDAALGFFDWATSQEGYNHDTYTCNCLLQALLRL 857

Query: 111  RQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
            ++ +   D +   R K     N+ TF I++    R   +  A      M ++GV QN+  
Sbjct: 858  KRPK---DALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVIL 914

Query: 169  FNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
             N ++  LC ++ +  A E+F  M++     PD  TYS +++   K   +  A  +  +M
Sbjct: 915  HNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDM 974

Query: 227  VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            V  GC+P++VTY  ++  LCKAG++DEA  +++ M  + C P    Y+ ++  +    RI
Sbjct: 975  VSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRI 1034

Query: 287  EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            ++A     EM   G   +V  Y  L+ AFCK  K ++   +++ M  KG  PN  T N +
Sbjct: 1035 DEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSL 1094

Query: 347  LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
            L+    + E + A ++   MI K C  +  +Y  +I   C+  ++ +   + + M     
Sbjct: 1095 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNC 1154

Query: 406  IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            +P + TF+ +I+ +C    V  +  L   + E G  P+  T+  L   L K  R D  ++
Sbjct: 1155 VPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEY 1214

Query: 466  LQEKMN 471
            L  +M 
Sbjct: 1215 LLREMT 1220



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 196/418 (46%), Gaps = 3/418 (0%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           +S +  L  ALD+   ++SPEIV  VL++  + G  A  FF+WAE +  Y+H +   + +
Sbjct: 74  ASDEQALRVALDEYRGQLSPEIVGKVLQRLIDPGA-ALVFFEWAETRDGYQHEIFCCNCL 132

Query: 104 IESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           +  L K  QY    DL  + +  +   +  T+  ++  + R  K+  A   F+ M + G+
Sbjct: 133 LNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGL 192

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
             +      +L  LC +     A   F  M     PDS TY+ ++ G  K   L  A  +
Sbjct: 193 KAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRL 252

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
             EMVD G  P++ +Y  ++   CKA RV+ AL +++ M +  C P    Y+ +++    
Sbjct: 253 LEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCK 312

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
            +++++A     +M + G   +V  Y  L+  FC+         +++ M  +G  PN+ T
Sbjct: 313 LDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAIT 372

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N I++    R + + A++V + MI+  C  DA  Y+ +I  FC+ G+L +A  + + M 
Sbjct: 373 YNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMI 432

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +   P +   S LI+ LC    +  +  LL   I     P    +  L   L K  R
Sbjct: 433 RRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKR 490



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 192/385 (49%), Gaps = 5/385 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKV 147
           Q+  + +V  Y ++++   ++       +LV  M T+R    N  T+  IM  + R   +
Sbjct: 328 QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM-TERGYRPNAITYNNIMHVFCRRNDM 386

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E A     +M + G   +   ++ ++S  CK+  +R+A ++ + M  R   PD    S L
Sbjct: 387 ERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTL 446

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++   K   +  A+E+ R  +   C PD+V Y I++  LCKA R+ EA   +  M    C
Sbjct: 447 IDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRC 506

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ +V       RI DA   F  M   G++ DV  Y+ +I +FCK N   + ++
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFK 566

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +L+ M      P+  T + ++NGL   G  D+A+ VF+ M+   C  +  TY  +I   C
Sbjct: 567 MLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLC 626

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  ++E+A ++ + M+ +   P   T++ LINGLC+   + ++  +L +M +KG  P   
Sbjct: 627 KINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRM 686

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           T+G L + L K    ++++ L ++M
Sbjct: 687 TYGTLLRALQKTNNLELVEQLLKEM 711



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 185/368 (50%), Gaps = 4/368 (1%)

Query: 96   SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
            +V  Y S++  L K  +      L+  M R+    N+ T+  I+  + ++ +++EA +  
Sbjct: 982  NVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL 1041

Query: 155  NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
              M   G   N+  +  LL A CK      A  + + M ++ ++P+  TY+ LL+ + K 
Sbjct: 1042 EEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKK 1101

Query: 214  PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
              + RA ++   M+  GC P++V+Y  ++  LCKA +V E + +++ M S  C P    +
Sbjct: 1102 DEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTF 1161

Query: 274  SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            + ++       R++ A + F  ++++G   ++  YN+L+   CK+ +F     +L++M  
Sbjct: 1162 NTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR 1221

Query: 334  K-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELE 391
            K G +P+  T N +++GL      D AY++F +M+    A  D TY+++I   C+   ++
Sbjct: 1222 KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMD 1281

Query: 392  KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            +A  V + M    F P   T+  LI+G C  G +  +  +L+ ++ KG  P   TF    
Sbjct: 1282 EANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 1341

Query: 452  KLLIKEGR 459
              L K GR
Sbjct: 1342 DWLSKRGR 1349



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 180/393 (45%), Gaps = 5/393 (1%)

Query: 80   AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
            A   FK  E+  +    V  Y ++++SL K  +      LV  M +K    NV T+  ++
Sbjct: 931  ALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLL 990

Query: 139  RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
                +  K++EA      M + G + N+  +N ++   CK   + +A  + + M D    
Sbjct: 991  HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 1050

Query: 198  PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
            P+  TY++LL+ + K      A  +   MV+ G  P++ TY  ++D+ CK   V+ A  +
Sbjct: 1051 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQL 1110

Query: 258  VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + SM    C P    Y+ ++       ++ + V    +M  N  + D+  +N +I A CK
Sbjct: 1111 LSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 1170

Query: 318  ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADAD 375
              +    Y +   +   G  PN  T N +++GL      D+A  + R M +   C  D  
Sbjct: 1171 TYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDII 1230

Query: 376  TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            TY  +I   C+   +++A+K++  M      P   T+S++I+ LC    + ++  +LE M
Sbjct: 1231 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 436  IEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQ 467
            ++ G  P   T+G L     K G  D  L+ LQ
Sbjct: 1291 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ 1323



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 3/305 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I    K  + +   DL+  M R     +V     ++    +   ++ A     +  
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
                 ++ A++ L+ ALCK+K + +A+   D M K+R  PD  TY+ +++G  K   + 
Sbjct: 468 GMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIN 527

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +F  M   G  PD+VTY I++   CK   +D A  +++ M    C P    YS L+
Sbjct: 528 DAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALI 587

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +       ++ A D F EM   G   ++  YN LI   CK NK +    +L+ M  +   
Sbjct: 588 NGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCT 647

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+S T   ++NGL      +EA+RV R M  K C  D  TY  +++   +   LE   ++
Sbjct: 648 PDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQL 707

Query: 397 WKYMK 401
            K M+
Sbjct: 708 LKEME 712



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 144/296 (48%), Gaps = 4/296 (1%)

Query: 90   QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
            Q+    +V +Y+++I  L K  +      L+  M +   + ++ TF  I+    +  +V+
Sbjct: 1116 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD 1175

Query: 149  EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSIL 206
             A   FN++Q+ G T NL  +N L+  LCKS+   +A+ +   M  K    PD  TY+ +
Sbjct: 1176 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 1235

Query: 207  LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
            ++G  K   + RA ++F +M+  G  PD VTY I++  LCK   +DEA  +++ M     
Sbjct: 1236 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 1295

Query: 267  RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
             P +  Y  L+  +     ++ A++    +   G   DV  ++  I    K  + +    
Sbjct: 1296 DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 1355

Query: 327  VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
            +L+ M   G+ P++ T N +L G      T++A  +F  M +  CE D  TYT ++
Sbjct: 1356 LLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 129/239 (53%), Gaps = 2/239 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY  +I +L K ++       ++ M   R   +V T+  ++    + +++ +A   F+
Sbjct: 475 VVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFD 534

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDP 214
            M+  GV  ++  ++ ++ + CK  N+  A ++ + MK+ + +PD  TYS L+ G  K  
Sbjct: 535 RMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAG 594

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A ++F+EM+  GC P++VTY  ++D LCK  +V++A  +++ M    C P S  Y+
Sbjct: 595 TVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYT 654

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            L++     +R+E+A     EM+  G L D   Y  L+ A  K N  + V ++LK+M +
Sbjct: 655 CLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 188/402 (46%), Gaps = 36/402 (8%)

Query: 100  YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+S++  L K R++     L+  M  K+    ++ T+  ++    + ++V+ A   F  M
Sbjct: 1196 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 1255

Query: 158  QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
               G+  +   ++ ++S+LCK + + +A  + + M K+ F P + TY  L++G+ K  NL
Sbjct: 1256 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 1315

Query: 217  PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             +A EI + ++  G  PD+VT+ I +D L K GR+ +A  ++++M      P +  Y+ L
Sbjct: 1316 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 1375

Query: 277  VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY-RVLKDMNSKG 335
            +  +   +  EDAVD F  M + G   D A Y  L+G       +K++   V K M   G
Sbjct: 1376 LKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 1435

Query: 336  VAPNSR-----------------TCNIILNGLIGR-GETDEAYRVFRRMIKLCEADADTY 377
               N                    C I+   + G+ G   +A +VF  M    + +   +
Sbjct: 1436 FKLNHELSSKLEASIEVEADVRLGCAIV--DMFGKCGSPQDARKVFEGMD---QRNVVLW 1490

Query: 378  TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV--LLEDM 435
            + M+ ++    + E+AF +W+ M L+   P   TF  L+   C  G++ D+ V   +   
Sbjct: 1491 SAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLL-DAAVDEFVSIS 1549

Query: 436  IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             + G+ P  + F  +  LL   GR   L  + E  +L++  P
Sbjct: 1550 RDYGLEPGVDHFSCVIDLL---GR---LGLVNEAEDLMLGMP 1585



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 123/258 (47%), Gaps = 4/258 (1%)

Query: 217 PRAREIFREMVDT--GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           P A  +F E  +T  G   +I     +++VL KA +  +A  + +S         +  YS
Sbjct: 106 PGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYS 165

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +    +I  A + F EM + G+ A   ++ +++   C A +  +     ++M SK
Sbjct: 166 TLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SK 224

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKA 393
              P+S T N ++NGL      D+A R+   M+    A +  +Y  ++  FC+   +E A
Sbjct: 225 TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENA 284

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             + + M  +   P + +++ +INGLC    V ++C +++ MI++G +P+  T+G L   
Sbjct: 285 LWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 344

Query: 454 LIKEGREDVLKFLQEKMN 471
             + G  D    L  KM 
Sbjct: 345 FCRVGDLDGAVELVRKMT 362



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 2/170 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y  +I S  K       + ++  M+  + + +V T+  ++    +   V++A   F 
Sbjct: 545 VVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQ 604

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M   G   NL  +N L+  LCK   V +A E+ + M K    PDS TY+ L+ G     
Sbjct: 605 EMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNAS 664

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L  A  + REM D GC PD +TYG ++  L K   ++    ++K M++T
Sbjct: 665 RLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEAT 714


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 224/485 (46%), Gaps = 56/485 (11%)

Query: 29  TEALDAAKSISKIMLSS---PKVVLDTAL-----DQSGIRVSPEIVEDVLEKFRNAGTLA 80
           T ALD A+ + + M  S   P  V   AL      Q+ +    +++E+++E  R   T +
Sbjct: 175 TNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFS 234

Query: 81  F-----CFF---KWAEKQQNYEH--------SVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
           +     C     K+ E  +  E          V  Y+S+++   K+ +      L+  M 
Sbjct: 235 YNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294

Query: 125 TKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
            +R    V T+  ++  ++R  ++ +A      M K G++ +L  +N LL  LCK+  + 
Sbjct: 295 GRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLE 354

Query: 184 KAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +A E+ + M ++   PD  TYSIL+ G  K   +  AR +   M++ GC P++VT+  M+
Sbjct: 355 EAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMI 414

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV------------ 290
           D  CKAG+VDE   +++ M    C P    YS L+  Y   NR++DA             
Sbjct: 415 DGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASY 474

Query: 291 DTFLE-----------------MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            + LE                 M K G     + Y  +IG  C   +     ++L+ M+ 
Sbjct: 475 SSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSE 534

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +G  PN  T +I++NGL      ++A  V   M+ K C  D  TYT +I  FC+  +++ 
Sbjct: 535 RGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDA 594

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A++ +K M+     P    +++LI+G C  G V  +  +++ M+EKG  P   T+  L +
Sbjct: 595 AYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMR 654

Query: 453 LLIKE 457
            L  E
Sbjct: 655 SLTTE 659



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 198/390 (50%), Gaps = 12/390 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q++       Y+ +I  L K+ +     +++  M  +  + +V T+  ++    +   ++
Sbjct: 120 QKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALD 179

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILL 207
           EA      M++ G+T +  A+N LL+ LCK   + +  ++ + M +    PD+ +Y+ ++
Sbjct: 180 EARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVV 239

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               +      A +I  +M++  C PD+VTY  ++D  CK  ++DEA  +++ M    C 
Sbjct: 240 ACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCA 299

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           PT   Y+ L+  +   +R+ DA     +M K GI  D+  YN L+   CKA K +  + +
Sbjct: 300 PTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           L+ M  K  AP+  T +I++NGL   G+ D+A  +   M+ + C+ +  T+  MI  FC+
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCK 419

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G++++  KV + MK     P + T+S LI+G C    + D+  +L      GI P   +
Sbjct: 420 AGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKAS 473

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           +  + + L   G+   ++  QE M+L+ K+
Sbjct: 474 YSSMLEGLCSTGK---VEEAQEVMDLMTKQ 500



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 173/342 (50%), Gaps = 6/342 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  ++R    +  +   N M     + ++   N +L A C+  ++ +A   F   
Sbjct: 26  TYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFR-G 84

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    P + TY IL+ G  +   +  A ++  EM+   C+PD   Y  ++  LCK G++D
Sbjct: 85  KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKID 144

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  ++K M    C P    Y+ L+      N +++A     +M+++G+  D   YNAL+
Sbjct: 145 AARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALL 204

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
              CK N+ + V ++L++M   G  P++ + N ++  L   G+ +EA ++  +MI K C 
Sbjct: 205 NGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCG 264

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY  ++  FC+  ++++A ++ + M  +R  P++ T++ LI G      ++D+  +
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRV 324

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQEK 469
           +EDM + GI P   T+  L   L K G+     ++L+ + EK
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK 366



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 38/289 (13%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P + TY  L+ G+ +  N     EI  EM+    +PD++T+  ++   C+ G +D AL  
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            +      C PT+F Y +L+H      RI++A     EM +     D A+YN LI   CK
Sbjct: 82  FRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCK 139

Query: 318 ANKFKNVYRVLK-----------------------------------DMNSKGVAPNSRT 342
             K      VLK                                    M   G+ P++  
Sbjct: 140 MGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVA 199

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N +LNGL  + + +E  ++   M++   E D  +Y  ++   C+ G+ E+A K+ + M 
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            K+  P + T++ L++G C    + ++  LLEDM+ +   P+  T+  L
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTL 308



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 3/249 (1%)

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           FRE       P   TYG ++    +AG     L I   M +    P    ++ ++  Y  
Sbjct: 12  FRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQ 71

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
              ++ A+  F    K         Y  LI   C+  +    Y++L +M  K   P++  
Sbjct: 72  IGDLDRALSHF--RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAV 129

Query: 343 CNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N ++ GL   G+ D A  V + M+ + C  D  TYT +I   CQ   L++A K+ + MK
Sbjct: 130 YNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMK 189

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                P    ++ L+NGLC +  + +   LLE+M+E G  P   ++  +   L + G+ +
Sbjct: 190 ESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYE 249

Query: 462 VLKFLQEKM 470
               + EKM
Sbjct: 250 EAGKILEKM 258


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 180/363 (49%), Gaps = 3/363 (0%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKY 141
           FF+WA  Q +Y H   +Y+ ++E LAK  +   ++   N M     + N  T+  ++R  
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSL 62

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDS 200
            + Q+ EEA   F  M   G + N+ +++ L++ LC+ + V +A E+ + M D    P+ 
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY  LL G  K   L  A ++F  MV  GC PD V Y +++D   K G + EA  + + 
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C PT F Y+ L+  +  +         F +M + G + ++  +N L+  FCK   
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
               +R+  +M S G  P+  + N ++ G+  +G+  EA R+ R MI+     D  +Y +
Sbjct: 243 MVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNI 302

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I  + + G L+ A K++  +      P   ++S +I+ LC  G V  + V+ +DMI  G
Sbjct: 303 LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG 362

Query: 440 IRP 442
             P
Sbjct: 363 SAP 365



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 131/270 (48%), Gaps = 1/270 (0%)

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           +Y+ LLE   K          + +M+  GC P+  TYG ++  LC+A R +EA  + + M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +  C P  F YS+L+       ++++A +   EM   G   +V  Y +L+   CK  K 
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMM 380
           K    +   M  +G  P+    N++++G   +G+  EAYR+F  M+ K C     TY  +
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  F + GE  +   ++K M  +  +P++ TF+ L++G C  G + ++  L  +M   G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P   ++  L + +  +G+    + L  +M
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 160/332 (48%), Gaps = 5/332 (1%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            ++ +V  Y S++  L K+ + +   DL + M  +    +   + +++  +++   + EA
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEG 209
              F  M + G    +  +N LLS   +     + Q +F D ++   +P+  T++ LL+G
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K  ++  A  +F EM   GC PD+V+Y  ++  +C  G+  EA  +++ M  +   P 
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y++L+  Y     ++ A+  F E+ K+G+  D   Y+ +I   C+A K    + V K
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGE-TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
           DM + G AP++     ++ GL  RGE   E+  +F+ M+K  C      Y +++   C+ 
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLC-RGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA 415

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
              +   +++  +  + F P +    V++  L
Sbjct: 416 KRSDDVCEIFHELTERGFSPDVEISKVILETL 447



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 1/228 (0%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           N   ++Y  +++VL K+GR D   G    M    C P ++ Y  L+ +     R E+A  
Sbjct: 14  NHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARS 73

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F  M   G   +V  Y+ LI   C+  K      +L +M   G  PN  T   +L+GL 
Sbjct: 74  VFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLC 133

Query: 352 GRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G+  EA  +F RM+ + C  D   Y ++I  F + G++ +A+++++ M  K  IP++ 
Sbjct: 134 KMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           T++ L++G   KG       L +DM+ +G  P+  TF  L     K G
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 177/342 (51%), Gaps = 6/342 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++  Y +  ++  A    +V+ +  V+ ++  +N +L +LC S  +++A E+ 
Sbjct: 171 DVITYNVMISGYCKAGEINNA---LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  R   PD  TY+IL+E   +D  + +A ++  EM D GC PD+VTY ++V+ +CK 
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA+  +  M S+ C+P    +++++ +     R  DA     +M + G    V  +
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI   C+         +L+ M   G  PNS + N +L+G     + D A     RM+ 
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  D  TY  M+   C+ G++E A ++   +  K   P + T++ +I+GL   G    
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           +  LL++M  K ++P   T+  L   L +EG+ D  +KF  E
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 191/413 (46%), Gaps = 40/413 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V  Y+ MI    K  +      +++ M      +V T+  I+R      K+++A+   + 
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVSP--DVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M +     ++  +  L+ A C+   V +A ++ D M+DR   PD  TY++L+ G  K+  
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 216 LPRAREIFREMVDTGCNPDI-----------------------------------VTYGI 240
           L  A +   +M  +GC P++                                   VT+ I
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ LC+ G +  A+ I++ M    C+P S  Y+ L+H +  E +++ A++    M   G
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D+  YN ++ A CK  K ++   +L  ++SKG +P   T N +++GL   G+T +A 
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469

Query: 361 RVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++   M  K  + D  TY+ ++    + G++++A K +   +     P+  TF+ ++ GL
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL 529

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMN 471
           C       +   L  MI +G +P+  ++  L + L  EG  ++ L+ L E  N
Sbjct: 530 CKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCN 582



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 21/301 (6%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  II+R      +  +A      M + G + ++  FN L++ LC+   + +A +I 
Sbjct: 308 NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDIL 367

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K    P+S +Y+ LL G+ K+  + RA E    MV  GC PDIVTY  M+  LCK 
Sbjct: 368 EKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+V++A+ I+  + S  C P    Y+ ++       +   A+    EM    +  D   Y
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           ++L+G   +  K     +   +    GV PN+ T N I+ GL    +TD A      MI 
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMIN 547

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C+    +YT++I+     G  ++A +                   L+N LC+KG++  
Sbjct: 548 RGCKPTETSYTILIEGLAYEGMAKEALE-------------------LLNELCNKGLMKR 588

Query: 428 S 428
           S
Sbjct: 589 S 589



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 133/266 (50%), Gaps = 4/266 (1%)

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +PD    + L+ G+ +     +A +I   +  +G  PD++TY +M+   CKAG ++ AL 
Sbjct: 134 VPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALS 193

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M  +   P    Y+ ++ +     +++ A++    M +     DV  Y  LI A C
Sbjct: 194 VLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATC 250

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           + +      ++L +M  +G  P+  T N+++NG+   G  DEA +    M    C+ +  
Sbjct: 251 RDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+ ++++  C  G    A K+   M  K F PS+ TF++LIN LC KG++  +  +LE M
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
            + G +P+  ++  L     KE + D
Sbjct: 371 PKHGCQPNSLSYNPLLHGFCKEKKMD 396


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 176/342 (51%), Gaps = 6/342 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++  Y +  ++  A    +V+ +  V+ ++  +N +L +LC S  +++A E+ 
Sbjct: 171 DVITYNVMISGYCKAGEINNA---LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  R   PD  TY+IL+E   +D  +  A ++  EM D GC PD+VTY ++V+ +CK 
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA+  +  M S+ C+P    +++++ +     R  DA     +M + G    V  +
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI   C+         +L+ M   G  PNS + N +L+G     + D A     RM+ 
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  D  TY  M+   C+ G++E A ++   +  K   P + T++ +I+GL   G    
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           +  LL++M  K ++P   T+  L   L +EG+ D  +KF  E
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 190/413 (46%), Gaps = 40/413 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V  Y+ MI    K  +      +++ M      +V T+  I+R      K+++A+   + 
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVSP--DVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M +     ++  +  L+ A C+   V  A ++ D M+DR   PD  TY++L+ G  K+  
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 216 LPRAREIFREMVDTGCNPDI-----------------------------------VTYGI 240
           L  A +   +M  +GC P++                                   VT+ I
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ LC+ G +  A+ I++ M    C+P S  Y+ L+H +  E +++ A++    M   G
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D+  YN ++ A CK  K ++   +L  ++SKG +P   T N +++GL   G+T +A 
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469

Query: 361 RVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++   M  K  + D  TY+ ++    + G++++A K +   +     P+  TF+ ++ GL
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMN 471
           C       +   L  MI +G +P+  ++  L + L  EG  ++ L+ L E  N
Sbjct: 530 CKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCN 582



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 21/301 (6%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  II+R      +  +A      M + G + ++  FN L++ LC+   + +A +I 
Sbjct: 308 NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDIL 367

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M      P+S +Y+ LL G+ K+  + RA E    MV  GC PDIVTY  M+  LCK 
Sbjct: 368 EKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+V++A+ I+  + S  C P    Y+ ++       +   A+    EM    +  D   Y
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           ++L+G   +  K     +   +    G+ PN+ T N I+ GL    +TD A      MI 
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C+ +  +YT++I+     G  ++A +                   L+N LC+KG++  
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALE-------------------LLNELCNKGLMKK 588

Query: 428 S 428
           S
Sbjct: 589 S 589



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 4/266 (1%)

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +PD    + L+ G+ +     +A +I   +  +G  PD++TY +M+   CKAG ++ AL 
Sbjct: 134 VPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALS 193

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M  +   P    Y+ ++ +     +++ A++    M +     DV  Y  LI A C
Sbjct: 194 VLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATC 250

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           + +   +  ++L +M  +G  P+  T N+++NG+   G  DEA +    M    C+ +  
Sbjct: 251 RDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+ ++++  C  G    A K+   M  K F PS+ TF++LIN LC KG++  +  +LE M
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
            + G +P+  ++  L     KE + D
Sbjct: 371 PQHGCQPNSLSYNPLLHGFCKEKKMD 396


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 197/378 (52%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK+ +++++  L   M+T  +  ++ T+ I +  + R  ++  A+   
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C SK +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +  +MV  GC PD+VTYG +V+ LCK G +D AL ++  M++   +    I+
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIF 261

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ +      +E AVD F EME  GI  +V  YN+LI   C   ++ +  R+L +M  
Sbjct: 262 NTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLE 321

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           K + PN  T N +++     G+  EA ++   MI +  + D  TY ++I  FC    L++
Sbjct: 322 KKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDE 381

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++K+M  K  +P++ T++ LING C    V D   L  +M ++G+  +  T+  + +
Sbjct: 382 AKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQ 441

Query: 453 LLIKEGREDVLKFLQEKM 470
              + G  D  + + ++M
Sbjct: 442 GFFQAGDCDSAQMVFKQM 459



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 183/364 (50%), Gaps = 6/364 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  +  +  Y +++  L K     +  +L+N M   R+  NV  F  I+    + + VE
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVE 275

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            AV  F  M+  G+  N+  +N L++ LC       A  +   M ++ I P+  T++ L+
Sbjct: 276 VAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALI 335

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A ++  EM+    +PD +TY ++++  C   R+DEA  + K M S  C 
Sbjct: 336 DAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCL 395

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++ +    R+ED V+ F EM + G++ +   Y  +I  F +A    +   V
Sbjct: 396 PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 455

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S  V  +  T +I+L+GL   G+ D A  +F+ + K   E +   Y  MI+  C+
Sbjct: 456 FKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCK 515

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G++ +A+ ++  + +K   P + T++ +I+GLC K ++ ++  L   M E G  P+  T
Sbjct: 516 AGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGT 572

Query: 447 FGKL 450
           +  L
Sbjct: 573 YNTL 576



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 2/291 (0%)

Query: 182 VRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           V  A ++F D +K R  P    ++ LL    K         +  +M   G + D+ TY I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
            ++  C+  ++  AL ++  M      P     S L++ Y    RI DAV    +M + G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D   +  LI      NK      ++  M  +G  P+  T   ++NGL  RG+ D A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 361 RVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            +  +M     +A+   +  +I   C+   +E A  ++  M+ K   P++ T++ LIN L
Sbjct: 244 NLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           C+ G  SD+  LL +M+EK I P+  TF  L     KEG+    + L E+M
Sbjct: 304 CNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEM 354



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++DAVD F +M K+     +  +N L+ A  K NKF+ V  + + M + G++ +  T +
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I +N    R +   A  V  +M+KL  E D  T + ++  +C    +  A  +   M   
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ LI+GL      S++  L++ M+++G +P   T+G +   L K G  D+ 
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 464 KFLQEKM 470
             L  KM
Sbjct: 243 LNLLNKM 249



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 40/177 (22%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
           A   FK+ +K +  E ++  Y++MIE + K  +    WDL              FC +  
Sbjct: 487 ALVIFKYLQKSE-MELNIFIYNTMIEGMCKAGKVGEAWDL--------------FCSL-- 529

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIP 198
                  ++  V T+N M               +S LC  + +++A ++F  MK D  +P
Sbjct: 530 ------SIKPDVVTYNTM---------------ISGLCSKRLLQEADDLFRKMKEDGTLP 568

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           +S TY+ L+    +D +   + E+ +EM  +G   D  T  ++ ++L   GR+D++ 
Sbjct: 569 NSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML-HDGRLDKSF 624


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 197/372 (52%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +   +  V  Y+S++  + +     +  DL+  M  + +  +V T+  I+    R   ++
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+  F  M+  G+  ++  +N L+  LCK+        +   M  R  +P+  T+++LL
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A E+++EM+  G +P+I+TY  ++D  C   R+ EA  ++  M    C 
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    ++ L+  Y +  R++D +  F  + K G++A+   Y+ L+  FC++ K K    +
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M S GV P+  T  I+L+GL   G+ ++A  +F  + K   +     YT +I+  C+
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           GG++E A+ ++  +  K   P++ T++V+I+GLC KG +S++ +LL  M E G  P+  T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 546 YNTLIRAHLRDG 557



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 178/384 (46%), Gaps = 38/384 (9%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R++ + ++  F       AR ++    +     ++  G+  N+   N +++  C+    
Sbjct: 80  IRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKT 139

Query: 183 RKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +    MK  + PD+ T++ L++G   +  +  A  +   MV+ GC PD+VTY  +
Sbjct: 140 CFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSI 199

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+ +C++G    AL +++ M+    +   F YS ++ +   +  I+ A+  F EME  GI
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            + V  YN+L+   CKA K+ +   +LKDM S+ + PN  T N++L+  +  G+  EA  
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 362 VFRRMI------------------------------------KLCEADADTYTMMIKMFC 385
           +++ MI                                      C  D  T+T +IK +C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               ++   KV++ +  +  + +  T+S+L+ G C  G +  +  L ++M+  G+ P   
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQE 468
           T+G L   L   G+ E  L+  ++
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFED 463



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 41/344 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A   FK  E  +  + SV  Y+S++  L K  ++     L+  M ++ ++ NV TF +++
Sbjct: 247 AISLFKEME-TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-------- 190
             + +  K++EA   +  M   G++ N+  +N L+   C    + +A  + D        
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 191 -------------CMKDR---------------FIPDSKTYSILLEGWGKDPNLPRAREI 222
                        CM  R                + ++ TYSIL++G+ +   +  A E+
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F+EMV  G  PD++TYGI++D LC  G++++AL I + +  +       +Y+ ++     
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++EDA + F  +   G+  +V  Y  +I   CK         +L+ M   G APN  T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMF 384
            N ++   +  G+   + ++   M K C   ADA +  M+I M 
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEM-KSCGFSADASSIKMVIDML 588



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 127/244 (52%), Gaps = 3/244 (1%)

Query: 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           ++ +   M DL+  +R K   ++ TF  +++ Y  V++V++ +  F  + K G+  N   
Sbjct: 348 RLSEANNMLDLM--VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           ++ L+   C+S  ++ A+E+F  M     +PD  TY ILL+G   +  L +A EIF ++ 
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
            +  +  IV Y  +++ +CK G+V++A  +  S+     +P    Y+V++     +  + 
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 525

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A     +ME++G   +   YN LI A  +        +++++M S G + ++ +  +++
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585

Query: 348 NGLI 351
           + L+
Sbjct: 586 DMLL 589



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+A+ + + M  +   P+   +S          +    +D   ++E NGI  ++   N +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I  FC+  K    Y VL  +   G  P++ T N ++ GL   G+  EA  +  RM++  C
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY  ++   C+ G+   A  + + M+ +     + T+S +I+ LC  G +  +  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L ++M  KGI+ S  T+  L + L K G+
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGK 278


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 211/452 (46%), Gaps = 22/452 (4%)

Query: 27  PSTEALDAAKSISKIMLSS-----PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
           P  E   AA  +++++L+      P       L   G+ ++ +++  +L + R A  LA 
Sbjct: 25  PPVEPSPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLTGDLLVQLLLRLRGASKLAL 84

Query: 82  CFFKWAEKQQNYEHSVRA---YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
                A        S RA   Y +++++L + RQ+   W LV            TF ++ 
Sbjct: 85  SLLHAARLHPPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLA 144

Query: 139 RKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           R+Y       +AV  F+ M+ + G   + A F  LL  LCK K  + A E+F+  K ++ 
Sbjct: 145 RRYVAAGMTRQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYE 204

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------- 250
           P+ K Y++L+ GW K      A++  ++M+  G  P+IVTY I+++ +C+          
Sbjct: 205 PNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRF 264

Query: 251 ---VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              V  A  ++K M      P    YSV++H Y   ++ E  +  F  M++ GI   VA 
Sbjct: 265 DRTVRAAEDLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVAT 324

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y ++I       +  +   +L +M S+GV P+  T N       GR + + A +++ +M 
Sbjct: 325 YTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMK 384

Query: 368 ---KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
                   D  TY +++ MF +  + +   +VW  M      P ++++++L++GLCD   
Sbjct: 385 APGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKK 444

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
             ++C    +MIE+G  P   TF  L + LI+
Sbjct: 445 WREACQFFMEMIERGFLPQKITFETLYRGLIQ 476



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 4/223 (1%)

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           DL+  M  + +  NV ++ +I+  Y+R  K E  +  F  M++ G+   +A +  ++  L
Sbjct: 273 DLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCL 332

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNP 233
                +  A+ + D M    + P   TY+   + +    ++  A +++ +M   G    P
Sbjct: 333 ASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATP 392

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI TY I++ +  K  + D  + +   M  +   P    Y++LVH      +  +A   F
Sbjct: 393 DIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFF 452

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +EM + G L     +  L     +A+  +   R+ K ++ +  
Sbjct: 453 MEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEAA 495



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 7/201 (3%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNA--GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           + Q GI  +      +L  +  A    L  C F+ + K++    +V  Y S+I+ LA   
Sbjct: 278 MHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFR-SMKERGICPTVATYTSVIKCLASCG 336

Query: 112 QYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAA 168
           +      L++ M ++ +  +  T+    ++Y   + V  A+  +N M+  G   T ++  
Sbjct: 337 RLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHT 396

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N LL    K        ++++ M +  + PD  +Y++L+ G   +     A + F EM+
Sbjct: 397 YNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMI 456

Query: 228 DTGCNPDIVTYGIMVDVLCKA 248
           + G  P  +T+  +   L +A
Sbjct: 457 ERGFLPQKITFETLYRGLIQA 477


>gi|15220166|ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80550, mitochondrial; Flags: Precursor
 gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein; 31926-33272 [Arabidopsis thaliana]
 gi|332198297|gb|AEE36418.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 448

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 215/425 (50%), Gaps = 15/425 (3%)

Query: 25  SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFF 84
           + P +  L + K IS +     K       DQS      + V + L  + N    A  FF
Sbjct: 13  ASPYSVRLLSVKPISNV--DDAKFRSQEEEDQSS--YDQKTVCEALTCYSNDWQKALEFF 68

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVETFCIIMRKYA 142
            W E++  + H+   ++ +I+ L K  +++I W L+N M   T+ + N  TF I+ ++Y 
Sbjct: 69  NWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYV 128

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF---DCMKDRF-IP 198
               V+EA+  ++ +  + +    + +N L+ ALC+ K+V +A+E+    + + + F + 
Sbjct: 129 TAHLVQEAIDAYDKLDDFNLRDETSFYN-LVDALCEHKHVVEAEELCFGKNVIGNGFSVS 187

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           ++K ++++L GW K     + +E +++M   G   D+ +Y I +D++CK+G+  +A+ + 
Sbjct: 188 NTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLY 247

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           K M S   +     Y+ ++   G    +E  +  F EM + G   +VA +N +I   C+ 
Sbjct: 248 KEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCED 307

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTY 377
            + ++ YR+L +M  +G  P+S T   + + L    +  E   +F RMI+       DTY
Sbjct: 308 GRMRDAYRMLDEMPKRGCQPDSITYMCLFSRL---EKPSEILSLFGRMIRSGVRPKMDTY 364

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            M+++ F + G L+    VWK MK     P    ++ +I+ L  KG++  +    E+MIE
Sbjct: 365 VMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIE 424

Query: 438 KGIRP 442
           +G+ P
Sbjct: 425 RGLSP 429



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 111/247 (44%), Gaps = 7/247 (2%)

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRI 286
           ++G      T+  ++D+L K    + +  ++  M  +T   P    + ++   Y   + +
Sbjct: 74  ESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLV 133

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG---VAPNSRTC 343
           ++A+D + +++   +  + + YN L+ A C+         +    N  G      N++  
Sbjct: 134 QEAIDAYDKLDDFNLRDETSFYN-LVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIH 192

Query: 344 NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N+IL G    G   +    +++M  +    D  +Y++ + + C+ G+  KA K++K MK 
Sbjct: 193 NLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKS 252

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-ED 461
           +R    +  ++ +I  +     V     +  +M E+G  P+  T   + KLL ++GR  D
Sbjct: 253 RRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRD 312

Query: 462 VLKFLQE 468
             + L E
Sbjct: 313 AYRMLDE 319


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 197/372 (52%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +   +  V  Y+S++  + +     +  DL+  M  + +  +V T+  I+    R   ++
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+  F  M+  G+  ++  +N L+  LCK+        +   M  R  +P+  T+++LL
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A E+++EM+  G +P+I+TY  ++D  C   R+ EA  ++  M    C 
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    ++ L+  Y +  R++D +  F  + K G++A+   Y+ L+  FC++ K K    +
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M S GV P+  T  I+L+GL   G+ ++A  +F  + K   +     YT +I+  C+
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           GG++E A+ ++  +  K   P++ T++V+I+GLC KG +S++ +LL  M E G  P+  T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 546 YNTLIRAHLRDG 557



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 178/384 (46%), Gaps = 38/384 (9%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R++ + ++  F       AR ++    +     ++  G+  N+   N +++  C+    
Sbjct: 80  IRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKT 139

Query: 183 RKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +    MK  + PD+ T++ L++G   +  +  A  +   MV+ GC PD+VTY  +
Sbjct: 140 CFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSI 199

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+ +C++G    AL +++ M+    +   F YS ++ +   +  I+ A+  F EME  GI
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            + V  YN+L+   CKA K+ +   +LKDM S+ + PN  T N++L+  +  G+  EA  
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 362 VFRRMI------------------------------------KLCEADADTYTMMIKMFC 385
           +++ MI                                      C  D  T+T +IK +C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               ++   KV++ +  +  + +  T+S+L+ G C  G +  +  L ++M+  G+ P   
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQE 468
           T+G L   L   G+ E  L+  ++
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFED 463



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 42/354 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A   FK  E  +  + SV  Y+S++  L K  ++     L+  M ++ ++ NV TF +++
Sbjct: 247 AISLFKEME-TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-------- 190
             + +  K++EA   +  M   G++ N+  +N L+   C    + +A  + D        
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 191 -------------CMKDR---------------FIPDSKTYSILLEGWGKDPNLPRAREI 222
                        CM  R                + ++ TYSIL++G+ +   +  A E+
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F+EMV  G  PD++TYGI++D LC  G++++AL I + +  +       +Y+ ++     
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++EDA + F  +   G+  +V  Y  +I   CK         +L+ M   G APN  T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEKAF 394
            N ++   +  G+   + ++   M K C   ADA +  M+I M    GEL+K+F
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEM-KSCGFSADASSIKMVIDMLLS-GELDKSF 597



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+A+ + + M  +   P+   +S          +    +D   ++E NGI  ++   N +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I  FC+  K    Y VL  +   G  P++ T N ++ GL   G+  EA  +  RM++  C
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY  ++   C+ G+   A  + + M+ +     + T+S +I+ LC  G +  +  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L ++M  KGI+ S  T+  L + L K G+
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGK 278


>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
          Length = 520

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 201/428 (46%), Gaps = 10/428 (2%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA---- 108
           ALD  G  ++  +V DVL + R    LAF FF WA +Q  Y H    Y+ +I+ L+    
Sbjct: 67  ALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYNHEPTTYNDIIDILSGTRY 126

Query: 109 KIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           K RQ+ ++ ++++ M+    R + VE    I+R Y                 +       
Sbjct: 127 KSRQFGVLCNVLDHMKRHGSRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPET 186

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            A N LL A CK   V++A+ +F  +K + + +++TYS L  GW +  +  +A ++  EM
Sbjct: 187 DALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEM 246

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS---TVCRPTSFIYSVLVHTYGVE 283
           +     P+  TY   +   C AG V EA  + + M +   T+  PT+  YS+++      
Sbjct: 247 IQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAKA 306

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           +R+E+  +   +M   G + DV  Y  LI   C   K    YRVL +M   G  P+  T 
Sbjct: 307 DRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTY 366

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N  LN      + D+A  +  RMI+  CE    TY MM+ MF + GE  +A  +   M  
Sbjct: 367 NCFLNVFCSHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMDK 426

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           +R   ++ T+ ++I GL D G    +  LL+++I + ++ S + F  +   L   G    
Sbjct: 427 RRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKFDAIMLRLSDVGNLGA 486

Query: 463 LKFLQEKM 470
           +  L E M
Sbjct: 487 IHRLSEHM 494


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 211/452 (46%), Gaps = 22/452 (4%)

Query: 27  PSTEALDAAKSISKIMLSS-----PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
           P  E   AA  +++++L+      P       L   G+ ++ +++  +L + R A  LA 
Sbjct: 25  PPVEPSPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLTGDLLVQLLLRLRGASKLAL 84

Query: 82  CFFKWAEKQQNYEHSVRA---YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
                A        S RA   Y +++++L + RQ+   W LV            TF ++ 
Sbjct: 85  SLLHAARLHPPPAASSRAADAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLA 144

Query: 139 RKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           R+Y       +AV  F+ M+ + G   + A F  LL  LCK K  + A E+F+  K ++ 
Sbjct: 145 RRYVAAGMTRQAVRAFDDMEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYE 204

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------- 250
           P+ K Y++L+ GW K      A++  ++M+  G  P+IVTY I+++ +C+          
Sbjct: 205 PNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRF 264

Query: 251 ---VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              V  A  ++K M      P    YSV++H Y   ++ E  +  F  M++ GI   VA 
Sbjct: 265 DRTVRAAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVAT 324

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y ++I       +  +   +L +M S+GV P+  T N       GR + + A +++ +M 
Sbjct: 325 YTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMK 384

Query: 368 ---KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
                   D  TY +++ MF +  + +   +VW  M      P ++++++L++GLCD   
Sbjct: 385 APGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKK 444

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
             ++C    +MIE+G  P   TF  L + LI+
Sbjct: 445 WREACQFFMEMIERGFLPQKITFETLYRGLIQ 476



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 4/223 (1%)

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           DL+  M  + +  +V ++ +I+  Y+R  K E  +  F  M++ G+   +A +  ++  L
Sbjct: 273 DLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCL 332

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNP 233
                +  A+ + D M    + P   TY+   + +    ++  A +++ +M   G    P
Sbjct: 333 ASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATP 392

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI TY I++ +  K  + D  + +   M  +   P    Y++LVH      +  +A   F
Sbjct: 393 DIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFF 452

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +EM + G L     +  L     +A+  +   R+ K ++ +  
Sbjct: 453 MEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRVDEEAA 495



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCII 137
           L  C F+ + K++    +V  Y S+I+ LA   +      L++ M ++ +  +  T+   
Sbjct: 305 LCLCMFR-SMKERGICPTVATYTSVIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCF 363

Query: 138 MRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            ++Y   + V  A+  +N M+  G   T ++  +N LL    K        ++++ M + 
Sbjct: 364 FKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCES 423

Query: 196 FI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + PD  +Y++L+ G   +     A + F EM++ G  P  +T+  +   L +A
Sbjct: 424 TVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFLPQKITFETLYRGLIQA 477


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 200/405 (49%), Gaps = 36/405 (8%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I SL+K  +      L+  M     + + ETF  ++    +  ++ EA    N M 
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQE-----------IFDCMKDRFI---------- 197
             G   +   +  L++ LCK   V  A++           IF+ +   F+          
Sbjct: 315 IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKA 374

Query: 198 ------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
                       PD  TY+ L+ G+ K+  +  A E+  +M + GC P++ +Y I+VD  
Sbjct: 375 VLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGF 434

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK G++DEA  ++  M +   +P +  ++ L+  +  E+RI +AV+ F EM + G   DV
Sbjct: 435 CKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDV 494

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             +N+LI   C+ ++ K+   +L+DM S+GV  N+ T N ++N  + RGE  EA ++   
Sbjct: 495 YTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNE 554

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+ +    D  TY  +IK  C+ GE++KA  +++ M      PS  + ++LINGLC  G+
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGM 614

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           V ++    ++M+ +G  P   TF  L   L + GR ED L   ++
Sbjct: 615 VEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRK 659



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 168/338 (49%), Gaps = 2/338 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++  Y +   V  A+   + M+  G   N+ ++  L+   CK   + +A  + 
Sbjct: 388 DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVL 447

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M  D   P++  ++ L+  + K+  +P A EIFREM   GC PD+ T+  ++  LC+ 
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +  AL +++ M S      +  Y+ L++ +     I++A     EM   G   D   Y
Sbjct: 508 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITY 567

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N+LI   C+A +      + + M   G AP++ +CNI++NGL   G  +EA    + M+ 
Sbjct: 568 NSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL 627

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           +    D  T+  +I   C+ G +E    +++ ++ +   P   TF+ L++ LC  G V D
Sbjct: 628 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYD 687

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +C+LL++ IE G  P+  T+  L + +I +   D  +F
Sbjct: 688 ACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRRF 725



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 196/416 (47%), Gaps = 43/416 (10%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E + ++Y+ ++E L     +++  ++   M ++++   + TF ++M+ +  V +++ A+ 
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
               M K+G   N   +  L+ +L K   V +A ++ + M     +PD++T++ ++ G  
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   +  A ++   M+  G  PD +TYG +++ LCK GRVD A    K +   + +P   
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA----KDLFYRIPKPEIV 354

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           I++ L+H +    R++DA     +M  + GI+ DV  YN+LI  + K         VL D
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRV---------------------------- 362
           M +KG  PN  +  I+++G    G+ DEAY V                            
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474

Query: 363 -------FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
                  FR M  K C+ D  T+  +I   C+  E++ A  + + M  +  + +  T++ 
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LIN    +G + ++  L+ +M+ +G      T+  L K L + G  D  + L EKM
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 187/437 (42%), Gaps = 43/437 (9%)

Query: 27  PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           P     D+A    K++       LD+ L  S  +++P  +  +LE   N  T +   F W
Sbjct: 46  PEIGGTDSANEWEKLL---KPFDLDS-LRNSFHKITPFQLYKLLELPLNVST-SMELFSW 100

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQ 145
              Q  Y HS   Y  +I  L    +++ +  L+  M+ + ++  E+ F  IMR Y +  
Sbjct: 101 TGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDK-- 158

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205
                                A F G  + L     + + + ++ C      P  K+Y++
Sbjct: 159 ---------------------AGFPGQTTRL-----MLEMRNVYSCE-----PTFKSYNV 187

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +LE          A  +F +M+     P + T+G+++   C    +D AL +++ M    
Sbjct: 188 VLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG 247

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P S IY  L+H+    NR+ +A+    EM   G + D   +N +I   CK ++     
Sbjct: 248 CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAA 307

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
           +++  M  +G AP+  T   ++NGL   G  D A  +F R+ K    +   +  +I  F 
Sbjct: 308 KMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PEIVIFNTLIHGFV 364

Query: 386 QGGELEKAFKVWKYMKLKR-FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
             G L+ A  V   M      +P + T++ LI G   +G+V  +  +L DM  KG +P+ 
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query: 445 ETFGKLRKLLIKEGRED 461
            ++  L     K G+ D
Sbjct: 425 YSYTILVDGFCKLGKID 441



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 157/330 (47%), Gaps = 22/330 (6%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPE-----IVEDVLEKFRNAGTLAFCFFKW 86
           LD AK++   M++S  +V D     S I    +     +  +VL   RN G         
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGC-------- 420

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145
                  + +V +Y  +++   K+ +    ++++N M    +  N   F  ++  + +  
Sbjct: 421 -------KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYS 204
           ++ EAV  F  M + G   ++  FN L+S LC+   ++ A  +  D + +  + ++ TY+
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+  + +   +  AR++  EMV  G   D +TY  ++  LC+AG VD+A  + + M   
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P++   ++L++       +E+AV+   EM   G   D+  +N+LI   C+A + ++ 
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 653

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
             + + + ++G+ P++ T N +++ L   G
Sbjct: 654 LTMFRKLQAEGIPPDTVTFNTLMSWLCKGG 683



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +NG      +Y  LIG      +FK + R+L  M  +G+         I+      G   
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPG 163

Query: 358 EAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +  R+   M  +  CE    +Y +++++   G   + A  V+  M  ++  P++ TF V+
Sbjct: 164 QTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVV 223

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +   C    +  +  LL DM + G  P+   +  L   L K  R  + L+ L+E
Sbjct: 224 MKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEE 277


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 199/372 (53%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +   + +V  Y+S++  + K     +  DL+  M  + +  +V T+  I+    R   ++
Sbjct: 163 ENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID 222

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+  F  M+  G+  +L  +N L+  LCK+       ++   M  R  IP+  T+++L+
Sbjct: 223 AAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLI 282

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A E+++EM+  G +P+ +TY  ++D  C   R+ EA  ++  M    C 
Sbjct: 283 DVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCS 342

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    ++ L+  Y    R+++ +  F ++ K G++A+   Y+ L+  FC++ K +    +
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M S GV P+  T  I+L+GL   G+ ++A  +F  + K     D   YT++I+  C+
Sbjct: 403 FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           GG++E A+ ++  +  K   P++ T++V+I+GLC KG +S++ +LL  M E G  P+  T
Sbjct: 463 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCT 522

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 523 YNTLIRAHLRDG 534



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 172/358 (48%), Gaps = 42/358 (11%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPN 215
           M+  G+  N+   N +++  C+      A  +    MK  + PD+ T++ L+ G   +  
Sbjct: 91  MELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESK 150

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +   MV+ GC P++VTY  +V+ +CK+G    AL +++ MD    +   F YS 
Sbjct: 151 VSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYST 210

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++ +   +  I+ A+  F EME  GI + +  YN+L+G  CKA K+ +  ++LKDM S+ 
Sbjct: 211 IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK 270

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------------------------- 369
           + PN  T N++++  +  G+  EA  +++ MI                            
Sbjct: 271 IIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEAN 330

Query: 370 ----------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
                     C  D  T+T +IK +C+   +++  K+++ +  +  + +  T+S+L+ G 
Sbjct: 331 NMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGF 390

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE----KMNL 472
           C  G +  +  L ++M+  G+ P   T+G L   L   G+ E  L+  ++    KMNL
Sbjct: 391 CQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNL 448



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 177/385 (45%), Gaps = 37/385 (9%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  TF  ++       KV EAV     M + G   N+  +N +++ +CKS +   A ++ 
Sbjct: 134 DTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLL 193

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R +  D  TYS +++   +D  +  A  +F+EM   G    +VTY  +V  LCKA
Sbjct: 194 RKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKA 253

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+ ++ + ++K M S    P    ++VL+  +  E ++++A + + EM   GI  +   Y
Sbjct: 254 GKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITY 313

Query: 309 NALIGAFCKANKFKNVYRVL-----------------------------------KDMNS 333
           N+L+  +C  N+      +L                                   + ++ 
Sbjct: 314 NSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISK 373

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +G+  N+ T +I++ G    G+ + A  +F+ M+ L    D  TY +++   C  G+LEK
Sbjct: 374 RGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEK 433

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++++ ++  +    +  ++++I G+C  G V D+  L   +  KG++P+  T+  +  
Sbjct: 434 ALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 493

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEP 477
            L K+G       L  KM     EP
Sbjct: 494 GLCKKGSLSEANILLRKMEEDGNEP 518



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 172/373 (46%), Gaps = 20/373 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  ++ +I+   K  + Q   +L   M TK +  N  T+  +M  Y    ++ EA    
Sbjct: 274 NVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNML 333

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           ++M +   + ++  F  L+   CK K V +  ++F  +  R  + ++ TYSIL++G+ + 
Sbjct: 334 DLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQS 393

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+F+EMV  G  PD++TYGI++D LC  G++++AL I + +  +       +Y
Sbjct: 394 GKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMY 453

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++       ++EDA + F  +   G+  +V  Y  +I   CK         +L+ M  
Sbjct: 454 TIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 513

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELE 391
            G  PN  T N ++   +  G+   + ++   M K C   ADA +  M+I M        
Sbjct: 514 DGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEM-KSCGFSADASSIKMVIDMLSSA---- 568

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
               VW + K  R  P +  F      L     ++ S  L  + IE     S E    LR
Sbjct: 569 ----VW-WFKEPRRSPGVKRFRGTQAYLMPFNTITAS--LNFNTIEAHGMSSAELHRDLR 621

Query: 452 KLLIKEGREDVLK 464
           ++    GR +VLK
Sbjct: 622 QV----GRSEVLK 630



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 123/260 (47%), Gaps = 1/260 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++ R +P    +S    G           +  ++M   G   +I T  IM++  C+  + 
Sbjct: 57  IRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKT 116

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  ++  +      P +  ++ L++   +E+++ +AV     M +NG   +V  YN++
Sbjct: 117 CFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSI 176

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           +   CK+        +L+ M+ + V  +  T + I++ L   G  D A  +F+ M  K  
Sbjct: 177 VNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 236

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           ++   TY  ++   C+ G+     ++ K M  ++ IP++ TF+VLI+    +G + ++  
Sbjct: 237 KSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANE 296

Query: 431 LLEDMIEKGIRPSGETFGKL 450
           L ++MI KGI P+  T+  L
Sbjct: 297 LYKEMITKGISPNTITYNSL 316



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 2/231 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           + N    +  + S+I+   K+++      L   +  + ++ N  T+ I+++ + +  K+E
Sbjct: 338 RNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLE 397

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A   F  M   GV  ++  +  LL  LC +  + KA EIF D  K +   D   Y+I++
Sbjct: 398 IAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIII 457

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           EG  K   +  A  +F  +   G  P+++TY +M+  LCK G + EA  +++ M+     
Sbjct: 458 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNE 517

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           P    Y+ L+  +  +  +  +     EM+  G  AD +    +I     A
Sbjct: 518 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSA 568



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 37/224 (16%)

Query: 282 VENRIEDAVDTFLE-----------------------------------MEKNGILADVA 306
           V+ + +DA+D F E                                   ME NGI  ++ 
Sbjct: 42  VDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIY 101

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             N +I  FC+  K    Y VL  +   G  P++ T N ++NGL    +  EA  +  RM
Sbjct: 102 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARM 161

Query: 367 IK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++  C+ +  TY  ++   C+ G+   A  + + M  +     + T+S +I+ LC  G +
Sbjct: 162 VENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCI 221

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             +  L ++M  KGI+ S  T+  L   L K G+  D ++ L++
Sbjct: 222 DAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKD 265


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 190/371 (51%), Gaps = 3/371 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVY 152
           + ++  + ++I  L K+ ++    +L + M  K    +V T+  I+    ++ +   A  
Sbjct: 160 QPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAG 219

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
               M++ G   N+  ++ L+ +LC+ + V +A +IF  MK + I PD  TY+ L++G  
Sbjct: 220 LLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLC 279

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K      A  +  EM      PDIVT+ ++VD  CK G+V EALG++K+M      P   
Sbjct: 280 KFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L++ Y +   + +A   F  M   G   ++  YN LI  +CKA +     ++  +M
Sbjct: 340 TYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEM 399

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGEL 390
             +G+ PN+ + N +++G    G+  EA  +FR M       D  TY++++  FC+ G L
Sbjct: 400 IHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYL 459

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            KAF++++ M+     P++  +++L++ +C  G   D+  L  ++  +G++P  + +  +
Sbjct: 460 GKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTI 519

Query: 451 RKLLIKEGRED 461
              L KEG  D
Sbjct: 520 INGLCKEGLLD 530



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 178/366 (48%), Gaps = 10/366 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-----NVETFCIIMRKYARVQKVEEAVYTF 154
           +  ++ ++ K+ QY   +D+V ++  +  L     N+ T  I M  + ++Q+V+      
Sbjct: 95  FAKLLSAIVKMGQY---YDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVL 151

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+   +  F  L++ LCK     +A E+FD M  +   PD  TY+ ++ G  K 
Sbjct: 152 AKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKI 211

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  + ++M + GC P++VTY  ++D LC+   V+EAL I   M +    P  F Y
Sbjct: 212 GETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTY 271

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+      +R ++A     EM    I+ D+  +N L+  FCK  K      VLK M  
Sbjct: 272 TSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTE 331

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            GV PN  T + ++ G     +  EA ++F  MI K C+ +  +Y ++I  +C+   +++
Sbjct: 332 MGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDE 391

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M  +   P+  +++ LI+G C  G + ++  L  +M   G  P   T+  L  
Sbjct: 392 AMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLD 451

Query: 453 LLIKEG 458
              K+G
Sbjct: 452 GFCKQG 457



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 160/321 (49%), Gaps = 3/321 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +     +  Y S+I+ L K  +++    L+N M +  ++ ++ TF +++  + +  KV
Sbjct: 260 KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKV 319

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA+     M + GV  N+  ++ L+       +V +A+++F  M  +   P+  +Y+IL
Sbjct: 320 SEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNIL 379

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A ++F EM+  G  P+ V+Y  ++   C+ G++ EA  + ++M +   
Sbjct: 380 INGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGN 439

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  F YS+L+  +  +  +  A   F  M+   +  ++ MY  L+ A CK+   K+  +
Sbjct: 440 LPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARK 499

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +  ++  +G+ P+ +    I+NGL   G  DEA   FR M    C  D  +Y ++I+   
Sbjct: 500 LFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLL 559

Query: 386 QGGELEKAFKVWKYMKLKRFI 406
           Q  +  +A  +   M+ + FI
Sbjct: 560 QHKDESRALLLVGEMRDRGFI 580



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 14/258 (5%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQK 146
           E +V  Y S++        Y +  D+V A +   ++       N+ ++ I++  Y + ++
Sbjct: 335 EPNVVTYSSLMYG------YSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKR 388

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSI 205
           ++EA+  FN M   G+T N  ++N L+   C+   +R+AQ++F  M  +  +PD  TYSI
Sbjct: 389 IDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSI 448

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           LL+G+ K   L +A  +FR M  T   P++V Y I+V  +CK+G   +A  +   +    
Sbjct: 449 LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQG 508

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            +P   +Y+ +++    E  +++A++ F  ME +G   D   YN +I    +        
Sbjct: 509 LQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRAL 568

Query: 326 RVLKDMNSKGVAPNSRTC 343
            ++ +M  +G   + R C
Sbjct: 569 LLVGEMRDRGFIADVRPC 586



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 2/247 (0%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGIVKSMDSTVCRPTSFIY 273
           N+  A   F  M+     P I+ +  ++  + K G+  D  + + K M+     P  +  
Sbjct: 72  NIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTL 131

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+ ++ +    R++       ++ K G+   +  +  LI   CK  +F     +  DM +
Sbjct: 132 SIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVA 191

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG  P+  T N I+NGL   GET  A  + ++M +  C+ +  TY+ +I   C+   + +
Sbjct: 192 KGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNE 251

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++ YMK K   P + T++ LI GLC      ++  LL +M    I P   TF  L  
Sbjct: 252 ALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVD 311

Query: 453 LLIKEGR 459
              KEG+
Sbjct: 312 TFCKEGK 318


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 195/365 (53%), Gaps = 3/365 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S++  + +     +  DL+  M  + +  +V T+  I+    R   ++ A+  F 
Sbjct: 183 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 242

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M+  G+  ++  +N L+  LCK+        +   M  R  +P+  T+++LL+ + K+ 
Sbjct: 243 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 302

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A E+++EM+  G +P+I+TY  ++D  C   R+ EA  ++  M    C P    ++
Sbjct: 303 KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFT 362

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y +  R++D +  F  + K G++A+   Y+ L+  FC++ K K    + ++M S 
Sbjct: 363 SLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSH 422

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           GV P+  T  I+L+GL   G+ ++A  +F  + K   +     YT +I+  C+GG++E A
Sbjct: 423 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDA 482

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           + ++  +  K   P++ T++V+I+GLC KG +S++ +LL  M E G  P+  T+  L + 
Sbjct: 483 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542

Query: 454 LIKEG 458
            +++G
Sbjct: 543 HLRDG 547



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 182/392 (46%), Gaps = 42/392 (10%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R++ + ++  F       AR ++    +     ++  G+  N+   N +++  C+    
Sbjct: 70  IRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKT 129

Query: 183 RKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +    MK  + PD+ T++ L++G   +  +  A  +   MV+ GC PD+VTY  +
Sbjct: 130 CFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSI 189

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+ +C++G    AL +++ M+    +   F YS ++ +   +  I+ A+  F EME  GI
Sbjct: 190 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 249

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            + V  YN+L+   CKA K+ +   +LKDM S+ + PN  T N++L+  +  G+  EA  
Sbjct: 250 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 309

Query: 362 VFRRMI------------------------------------KLCEADADTYTMMIKMFC 385
           +++ MI                                      C  D  T+T +IK +C
Sbjct: 310 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 369

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               ++   KV++ +  +  + +  T+S+L+ G C  G +  +  L ++M+  G+ P   
Sbjct: 370 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 429

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQE----KMNL 472
           T+G L   L   G+ E  L+  ++    KM+L
Sbjct: 430 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 461



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 41/344 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A   FK  E  +  + SV  Y+S++  L K  ++     L+  M ++ ++ NV TF +++
Sbjct: 237 AISLFKEME-TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 295

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-------- 190
             + +  K++EA   +  M   G++ N+  +N L+   C    + +A  + D        
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355

Query: 191 -------------CMKDR---------------FIPDSKTYSILLEGWGKDPNLPRAREI 222
                        CM  R                + ++ TYSIL++G+ +   +  A E+
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F+EMV  G  PD++TYGI++D LC  G++++AL I + +  +       +Y+ ++     
Sbjct: 416 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 475

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++EDA + F  +   G+  +V  Y  +I   CK         +L+ M   G APN  T
Sbjct: 476 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 535

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMF 384
            N ++   +  G+   + ++   M K C   ADA +  M+I M 
Sbjct: 536 YNTLIRAHLRDGDLTASAKLIEEM-KSCGFSADASSIKMVIDML 578



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 127/244 (52%), Gaps = 3/244 (1%)

Query: 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           ++ +   M DL+  +R K   ++ TF  +++ Y  V++V++ +  F  + K G+  N   
Sbjct: 338 RLSEANNMLDLM--VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 395

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           ++ L+   C+S  ++ A+E+F  M     +PD  TY ILL+G   +  L +A EIF ++ 
Sbjct: 396 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 455

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
            +  +  IV Y  +++ +CK G+V++A  +  S+     +P    Y+V++     +  + 
Sbjct: 456 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 515

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A     +ME++G   +   YN LI A  +        +++++M S G + ++ +  +++
Sbjct: 516 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 575

Query: 348 NGLI 351
           + L+
Sbjct: 576 DMLL 579



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+A+ + + M  +   P+   +S          +    +D   ++E NGI  ++   N +
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I  FC+  K    Y VL  +   G  P++ T N ++ GL   G+  EA  +  RM++  C
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY  ++   C+ G+   A  + + M+ +     + T+S +I+ LC  G +  +  
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L ++M  KGI+ S  T+  L + L K G+
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGK 268



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           G+   +  A E+ +EM+  G  P+ +TY  ++D  CK  R+DEA
Sbjct: 710 GRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEA 753


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 199/399 (49%), Gaps = 24/399 (6%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETF 134
           LA  FF WA +Q  Y+H V +Y+ +++ L K     R  ++  DL+++  +    N+ TF
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSP---NLVTF 65

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK- 193
            I++R   +  +   A+     + ++ V  ++  FN L+  L K  N  +A ++F+ M+ 
Sbjct: 66  KILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMES 125

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDV-LCKAGR 250
            R  PD  TY+ ++ G  K  NL +ARE+  EM+  G    PDIVTY  +++  +CK G 
Sbjct: 126 SRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGD 185

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V+EAL I+  M      P    Y+ ++H   V  R+ +A +    M  +    D+  +N 
Sbjct: 186 VEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNT 242

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           L+  FCKA        VL++M  + + P+  T  I++NGL   G+   A+ +   +++  
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 302

Query: 371 E-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF---------IPSMHTFSVLINGLC 420
              D   YT ++   C+ GE+E+A K+ K M  +           +P + T+++++ GL 
Sbjct: 303 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLI 362

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             G +S +  L+ D++ +G  P   T+  L   L K  R
Sbjct: 363 KDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANR 401



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
           VEEA+   + M+  G   ++  +N ++ ALC +  V +A EI   M     PD  T++ L
Sbjct: 186 VEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCS--PDLVTFNTL 243

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L+G+ K   LPRA E+  EM      PD++TY I+V+ LC+ G+V  A  +++ +     
Sbjct: 244 LDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY 303

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA---------MYNALIGAFCK 317
            P    Y+ LV        IE+A     EM    ILA++           YN ++G   K
Sbjct: 304 IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIK 363

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
                    ++ D+ ++G  P+  T N +++GL       EA  +   M  L C  +  T
Sbjct: 364 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVT 423

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
              ++   C+ G ++ A+ +   M  KR  P++  ++ LI+GLC    + D+CV+L+ M 
Sbjct: 424 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMR 483

Query: 437 EKGIRPSGETFGKLRKLLIKEGR 459
            +G+      + KL   +I  GR
Sbjct: 484 GQGVALDDFAYRKLIVSMIHGGR 506



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 152/316 (48%), Gaps = 7/316 (2%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
           ++ G   ++ ++N LL  L KS +  +  +++ D +     P+  T+ IL+ G  K    
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA E  R + +    PD+  +  ++  L K G  D+A+ + ++M+S+   P  F Y+ +
Sbjct: 79  TRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTV 138

Query: 277 VHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGA-FCKANKFKNVYRVLKDMNS 333
           +        +E A +   EM + G     D+  YN LI A  CK    +    +L  M  
Sbjct: 139 ISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKL 198

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
            G AP+  T N I++ L   G   EA  + + M   C  D  T+  ++  FC+ G L +A
Sbjct: 199 AGPAPDVITYNSIIHALCVAGRVVEAAEILKTMS--CSPDLVTFNTLLDGFCKAGMLPRA 256

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +V + M  +  +P + T+++L+NGLC  G V  +  LLE+++ +G  P    +  L   
Sbjct: 257 LEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDG 316

Query: 454 LIKEGR-EDVLKFLQE 468
           L K G  E+  K ++E
Sbjct: 317 LCKSGEIEEAHKLVKE 332



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 147/283 (51%), Gaps = 9/283 (3%)

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +D +  D  +Y+ LL+   K  +  R  +++++++ +GC+P++VT+ I++   CKAG+  
Sbjct: 20  QDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAT 79

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            AL  ++++D     P  +I++ L+H    +   + AV  F  ME + +  D+  YN +I
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVI 139

Query: 313 GAFCKANKFKNVYRVLKDMNSKG--VAPNSRTCNIILN-GLIGRGETDEAYRVFRRMIKL 369
              CK+   +    +L++M  +G   AP+  T N ++N G+   G+ +EA  +   M KL
Sbjct: 140 SGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGM-KL 198

Query: 370 CEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TY  +I   C  G + +A ++ K M      P + TF+ L++G C  G++  
Sbjct: 199 AGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPR 255

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  +LE+M  + I P   T+  L   L + G+  V  +L E++
Sbjct: 256 ALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEI 298



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 10/254 (3%)

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           R   + +V T+ I++    RV +V+ A Y    + + G   ++ A+  L+  LCKS  + 
Sbjct: 265 RENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIE 324

Query: 184 KAQEIFDCMKDR----------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           +A ++   M  R           +P   TY+I+L G  KD ++ +A  +  ++V  G  P
Sbjct: 325 EAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVP 384

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+VTY  ++D LCKA RV EA  +   M S  C P       +V       R++DA    
Sbjct: 385 DVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLV 444

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           +EM +     +V +Y +LI   CK+++  +   VL  M  +GVA +      ++  +I  
Sbjct: 445 VEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHG 504

Query: 354 GETDEAYRVFRRMI 367
           G   EA  ++  M+
Sbjct: 505 GRVAEAMAMYDEMV 518



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 14/295 (4%)

Query: 62  SPEIV--EDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           SP++V    +L+ F  AG L        E  ++N    V  Y  ++  L ++ Q Q+ + 
Sbjct: 234 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 293

Query: 119 LVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA--------- 168
           L+  + R   + +V  +  ++    +  ++EEA      M    +   + +         
Sbjct: 294 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFT 353

Query: 169 FNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N +L  L K  ++ KA   I D +   ++PD  TY+ L++G  K   +  A ++  EM 
Sbjct: 354 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 413

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC P+ VT G +V  LC+ GRVD+A  +V  M      P   +Y+ L+      +R++
Sbjct: 414 SLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 473

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           DA      M   G+  D   Y  LI +     +      +  +M ++G  P+  T
Sbjct: 474 DACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGST 528


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 197/385 (51%), Gaps = 10/385 (2%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKY 141
            FK  E Q   +  V  Y+ +I+SL K R      D ++ M  + +  +V T+  I+   
Sbjct: 290 LFKRME-QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGL 348

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DS 200
             + ++ EA+  F  M++ G   ++ A+N ++ +LCK + V  A E    M DR IP ++
Sbjct: 349 CYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNA 408

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TYS +L G+     L  A ++F+EMV     P+ +T+ I+VD LC+ G V EA  + ++
Sbjct: 409 VTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFET 468

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M      P  + Y+ L++ Y +  ++ +A   F  M   G   D+  YN LI  +C + +
Sbjct: 469 MTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRR 528

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA----DT 376
                 +L  M+ K + PN+ T N I+ GL   G   +A  +F++M   C +       T
Sbjct: 529 MDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM---CSSGMLPTLMT 585

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y++++   C+ G L++A K++K MK K+  P +  +++LI G+   G +  +  L   + 
Sbjct: 586 YSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLS 645

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
             GI+P G T+  + K L+KEG  D
Sbjct: 646 ADGIQPPGRTYNVMIKGLLKEGLSD 670



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 196/398 (49%), Gaps = 5/398 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRKY 141
           F++ A  + N   S+  +   + S+AK++QY  +  L N M    + + V +  I++   
Sbjct: 81  FYRMA--RMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCL 138

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDS 200
            R+  V+ AV  +  M K G+  ++  F  L++ +C    ++ A E+++ M +    PD 
Sbjct: 139 CRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDV 198

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            +Y+ L+ G     N   A  +F++M   GC P++VTY  ++D LCK   V++A+  +  
Sbjct: 199 ISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSE 258

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M      P +  Y+ +VH      ++ +A   F  ME+NG   DV  YN +I +  K   
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTM 379
             +    L +M  +G+ P+  T   IL+GL   G+ +EA R+F++M  K C+ D   Y  
Sbjct: 319 VNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNT 378

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C+   +  A +    M  +   P+  T+S +++G C+ G + ++  L ++M+ + 
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           + P+  TF  L   L +EG     +++ E M     EP
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEP 476



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 203/418 (48%), Gaps = 12/418 (2%)

Query: 63  PEIVE--DVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           P+++    ++    N+G   +A   FK  E Q   + +V  Y+++I+SL K R      D
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVFKKME-QNGCKPNVVTYNTIIDSLCKDRLVNDAMD 254

Query: 119 LVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
            ++ M  + +  +  T+  I+     + ++ EA   F  M++ G   ++  +N ++ +L 
Sbjct: 255 FLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLY 314

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K + V  A +    M D+ IP D  TY+ +L G      L  A  +F++M   GC PD+V
Sbjct: 315 KDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVV 374

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y  ++D LCK   V++A+  +  M      P +  YS ++H +    ++++A   F EM
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
               ++ +   ++ L+   C+         V + M  KGV PN  T N ++NG   R + 
Sbjct: 435 VGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKM 494

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +EA +VF  M+ K C  D  +Y ++I  +C    ++KA  +   M +K+  P+  T++ +
Sbjct: 495 NEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTI 554

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED----VLKFLQEK 469
           + GLC  G + D+  L + M   G+ P+  T+  L   L K G  D    + K ++EK
Sbjct: 555 MKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEK 612



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 216/462 (46%), Gaps = 6/462 (1%)

Query: 17  SFLR--RYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFR 74
           SF R  R N      E      SI+K+   S  V L   +D  G+  +   +  ++    
Sbjct: 80  SFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLC 139

Query: 75  NAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVE 132
               + F    W +  +   +  V  + ++I  +    + ++  +L N M R+    +V 
Sbjct: 140 RLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++  ++           AV+ F  M++ G   N+  +N ++ +LCK + V  A +    M
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEM 259

Query: 193 KDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R IP D+ TY+ ++ G      L  A  +F+ M   GC PD+VTY I++D L K   V
Sbjct: 260 VGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLV 319

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A   +  M      P    Y+ ++H      ++ +A+  F +ME+ G   DV  YN +
Sbjct: 320 NDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTI 379

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I + CK     +    L +M  +G+ PN+ T + IL+G    G+ DEA ++F+ M+ +  
Sbjct: 380 IDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNV 439

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +  T+++++   CQ G + +A  V++ M  K   P+++T++ L+NG C +  ++++  
Sbjct: 440 MPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARK 499

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           + E M+ KG  P   ++  L        R D  K L  +M++
Sbjct: 500 VFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSV 541



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 174/362 (48%), Gaps = 14/362 (3%)

Query: 50  LDTALDQSGIRVSPEIVE--DVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIE 105
           L   +DQ    + P++V    +L      G L  A   FK  E Q+  +  V AY+++I+
Sbjct: 326 LSEMVDQG---IPPDVVTYTTILHGLCYLGQLNEAIRLFKKME-QKGCKPDVVAYNTIID 381

Query: 106 SLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           SL K R      + ++ M  + +  N  T+  I+  +  + +++EA   F  M    V  
Sbjct: 382 SLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMP 441

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIF 223
           N   F+ L+  LC+   V +A+ +F+ M ++ + P+  TY+ L+ G+     +  AR++F
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             MV  GC PD+ +Y I+++  C + R+D+A  ++  M      P +  Y+ ++      
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            R+ DA + F +M  +G+L  +  Y+ L+   CK        ++ K M  K + P+    
Sbjct: 562 GRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILY 621

Query: 344 NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA---FKVWKY 399
            I++ G+   G+ + A  +F ++     +    TY +MIK   + G  ++A   F+ WK 
Sbjct: 622 TILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKM 681

Query: 400 MK 401
           MK
Sbjct: 682 MK 683


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 195/363 (53%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+S++  + +     + +D++  M  + +  +V T+  I+    R   ++ A+  F  M
Sbjct: 195 TYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G+  ++  +N L+  LCK+        +   M  R  +P+  T+++LL+ + K+  L
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+++EM+  G +P+I+TY  ++D  C   R+ EA  ++  M    C P    ++ L
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y +  R++D +  F  + K G++A+   Y+ L+  FC++ K K    + ++M S GV
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T  I+L+GL   G+ ++A  +F  + K   +     YT +I+  C+GG++E A+ 
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  +  K   P++ T++V+I+GLC KG +S++ +LL  M E G  P+  T+  L +  +
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 456 KEG 458
           ++G
Sbjct: 555 RDG 557



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 176/384 (45%), Gaps = 38/384 (9%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R++ +  +  F       AR ++    +     ++  G+  N+   N +++  C+    
Sbjct: 80  IRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKT 139

Query: 183 RKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +    MK  + PD+ T++ L+ G   +  + +A  +   MV+ GC PD+VTY  +
Sbjct: 140 CFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSI 199

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+ +C++G    A  +++ M+    +   F YS ++ +   +  I+ A+  F EME  GI
Sbjct: 200 VNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            + V  YN+L+   CKA K+ +   +LKDM S+ + PN  T N++L+  +  G+  EA  
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 362 VFRRMI------------------------------------KLCEADADTYTMMIKMFC 385
           +++ MI                                      C  D  T+T +IK +C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               ++   KV++ +  +  + +  T+S+L+ G C  G +  +  L ++M+  G+ P   
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQE 468
           T+G L   L   G+ E  L+  ++
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFED 463



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 42/354 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A   FK  E  +  + SV  Y+S++  L K  ++     L+  M ++ ++ NV TF +++
Sbjct: 247 AISLFKEME-TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-------- 190
             + +  K++EA   +  M   G++ N+  +N L+   C    + +A  + D        
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 191 -------------CMKDR---------------FIPDSKTYSILLEGWGKDPNLPRAREI 222
                        CM  R                + ++ TYSIL++G+ +   +  A E+
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F+EMV  G  PD++TYGI++D LC  G++++AL I + +  +       +Y+ ++     
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++EDA + F  +   G+  +V  Y  +I   CK         +L+ M   G APN  T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEKAF 394
            N ++   +  G+   + ++   M K C   ADA +  M+I M    GEL+K+F
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEM-KSCGFSADASSIKMVIDMLLS-GELDKSF 597



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ + +DA+  F EM ++  L  +  ++    A  +  +F  V    K +   G+A N  
Sbjct: 65  VDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIY 124

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T NI++N      +T  AY V  +++KL  E D  T+  +I   C  G++ KA  +   M
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRM 184

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
                 P M T++ ++NG+C  G  S +  +L  M E+ ++    T+  +   L ++G
Sbjct: 185 VENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 190/377 (50%), Gaps = 16/377 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++++ L K  + +    L++ MR K    N+ T+ +I+      +K++EA    
Sbjct: 111 TVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKML 170

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M   G   ++  +N  +  LCK   V +A++    M     PD  +Y+ ++ G  K  
Sbjct: 171 EEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKSG 228

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +L  A  +   M + GC PD+VTY  ++D  CK G V+ A+G++ SM    CRP    Y+
Sbjct: 229 DLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYN 288

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+        I  A D  +EME+ G   DV  YNA I   CKA + K    V   M  +
Sbjct: 289 SLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 348

Query: 335 GVAPNSRTCN----------IILNGLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIK 382
           G  PN+ + +          ++L+GL   G  DEA  +F +++  K+CE D   Y +M+ 
Sbjct: 349 GCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLD 408

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+  +++KA ++ K M L++   ++ T+++L++GLC    +SD+  +L  M+++G  P
Sbjct: 409 SHCKRRQIDKALQIHKQM-LEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIP 467

Query: 443 SGETFGKLRKLLIKEGR 459
              T+G L   + K G+
Sbjct: 468 DFVTYGTLVDAMCKCGK 484



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 161/358 (44%), Gaps = 40/358 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++ +  R  + ++A   F  M       +   F  LL  LC+S  + KA+++ 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK+   +PD   Y+ L+ G+ K  +  +A +   EMV   C P +VTY  +VD LCKA
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R  +A+ ++  M    C P  + Y+V+V     E ++++A     EM   G   DV  Y
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 185

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N+ I   CK ++     + L  M    V P+  +   ++NGL   G+ D A R+   M  
Sbjct: 186 NSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSN 242

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKY---------------------------- 399
           + C  D  TY+ +I  FC+GGE+E+A  +                               
Sbjct: 243 RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGK 302

Query: 400 -------MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
                  M+ + F P + +++  I+GLC    V  +  + + M+E+G  P+  ++  L
Sbjct: 303 AEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 360



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 7/308 (2%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRA 219
           G   N+  +N LL  L +     KA  +F  M D+   PD+ T++ILL G  +   L +A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
           R++   M + GC PD   Y  ++    KA    +A   +  M    C PT   Y+ +V  
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                R  DAV    EM   G   ++  YN ++   C+  K     ++L++M  +G  P+
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
             T N  + GL      DEA +   RM      D  +YT +I   C+ G+L+ A ++  +
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLDSASRMLDH 239

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M  +   P + T+S LI+G C  G V  +  LL+ M++ G RP+   +  L   L + G 
Sbjct: 240 MSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGH 299

Query: 460 ----EDVL 463
               ED+L
Sbjct: 300 IGKAEDML 307



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 144/319 (45%), Gaps = 47/319 (14%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y ++I  L K         +++ M  +    +V T+  ++  + +  +VE A+   +
Sbjct: 214 VVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 273

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M K G   N+ A+N LL AL +  ++ KA+++   M+ R F PD  +Y+  ++G  K  
Sbjct: 274 SMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAE 333

Query: 215 NLPRAREIFREMVDTGCNP----------DIVTYGIMVDVLCKAGRVDEALGIV-KSMDS 263
            + +A+ +F  MV+ GC P          DI+ Y +++D LCK GR DEA  +  K +D 
Sbjct: 334 RVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE 393

Query: 264 TVCRPTSFIYSV----------------------------------LVHTYGVENRIEDA 289
            +C P  F Y+V                                  LVH   V++R+ DA
Sbjct: 394 KICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDA 453

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
               L M   G + D   Y  L+ A CK  K      + ++    G  P+  T + ++ G
Sbjct: 454 ETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITG 513

Query: 350 LIGRGETDEAYRVFRRMIK 368
           L+     +EAY +F ++++
Sbjct: 514 LVHENMAEEAYLLFTKLVE 532



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 107/220 (48%), Gaps = 12/220 (5%)

Query: 89  KQQNYEHSVRAYHSMIESLAK---IRQYQIMWDLV-------NAMRTKRML-NVETFCII 137
           +++ +   V +Y++ I+ L K   +++ + ++D +       NA     ++ ++  + ++
Sbjct: 311 ERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVL 370

Query: 138 MRKYARVQKVEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           +    +  + +EA   F+ V+ +     ++  +N +L + CK + + KA +I   M ++ 
Sbjct: 371 LDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN 430

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             +  T++IL+ G   D  L  A  +   MVD G  PD VTYG +VD +CK G+   AL 
Sbjct: 431 CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALE 490

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           + +      C P    YS L+     EN  E+A   F ++
Sbjct: 491 LFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 530


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 211/444 (47%), Gaps = 22/444 (4%)

Query: 42  MLSSPKVVLD----TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSV 97
           +L  PK+ L     TALD++GI     +++ V + F ++  L    F WAEK+  ++ S 
Sbjct: 88  ILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSA 147

Query: 98  RAYHSMIESLAKIRQYQIMW----DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
             ++SM+  L K R++   W    D +       +++ +TF I++R+Y R    E A+ T
Sbjct: 148 ALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRT 207

Query: 154 FNVMQKYGVTQNLAA----FNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSIL 206
           F       +  N  A    F  LL +LCK  +VR A + FD   ++   ++P  + Y+IL
Sbjct: 208 FEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNIL 267

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L GW +   L  A  ++ EM      P +VTYG +V+   +  RV+ A+ +V  M     
Sbjct: 268 LNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGI 327

Query: 267 RPTSFIYSVLVHTYGVENRIEDAV---DTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
           +  + +Y+ ++       R ++ +   + F   E+      ++ YN+L+  +CKA     
Sbjct: 328 KSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEG---PTISTYNSLVKGYCKAGDLVG 384

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIK 382
             ++LK M S+ V P   T N          + +E   ++ +MI+     D  TY +++K
Sbjct: 385 ASKILKMMISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLK 444

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           M C+   L+ A ++ K M+ +     + T ++  + LC      ++    EDM+ +GI P
Sbjct: 445 MLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVP 504

Query: 443 SGETFGKLRKLLIKEGREDVLKFL 466
              TF +L     K+G  ++ + L
Sbjct: 505 QYLTFHRLNDEFRKQGLTELARRL 528



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 158/362 (43%), Gaps = 33/362 (9%)

Query: 18  FLRRYNS---SEPSTEALDAAKSISKIMLSSP-----KVVLDTALDQSGIRVSPEIVEDV 69
            +RRY     SE +    + A S+  I  S       +++LD+   +  +RV+ +     
Sbjct: 191 LIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDY---- 246

Query: 70  LEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM- 128
                        F +  EK   +  SVR Y+ ++    + R+ +    L   M+ K + 
Sbjct: 247 -------------FDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMKKKNVK 293

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            +V T+  ++  Y+R+++VE A+   + M++ G+  N   +N ++ AL ++    + +E+
Sbjct: 294 PSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEAG---RFKEV 350

Query: 189 FDCMKDRFI----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
              M+  F+    P   TY+ L++G+ K  +L  A +I + M+     P   TY      
Sbjct: 351 LGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFRH 410

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
             K  +++E + +   M  +   P    Y +L+     E R++ AV    EM   G   D
Sbjct: 411 FSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDMD 470

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           +A         CK  +F+  +   +DM  +G+ P   T + + +    +G T+ A R+ +
Sbjct: 471 LATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRLNDEFRKQGLTELARRLCK 530

Query: 365 RM 366
            M
Sbjct: 531 LM 532


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 181/340 (53%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + R   +E+A    + M   G+  NL  +N LL+ +CK+  + KA EI   M
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++ + PDS+TYS+L+EG  +  N+ RA E+  EM      P ++TY ++++ LC+ G +
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
                I++ M     +P + +Y+ L+  +  E R+E++      M + GIL DV  YN+L
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 492

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  FCKA + +     L +M  + + PN+ T    ++G    GE + A R F  M+    
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGV 552

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +   YT +I+  C+ G + +AF V++++  +R +  + T+SVLI+GL   G + ++  
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  ++ EKG+ P+  T+  L     K+G  D    L E+M
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 207/430 (48%), Gaps = 26/430 (6%)

Query: 69  VLEKFRNAGTL-----------AFCFFKWAEKQQNY-----EHSVR----AYHSMIESLA 108
           +LE+ R  G L            FC  K  E+ + Y     E  +R     Y + I+  +
Sbjct: 473 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 532

Query: 109 KIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           K  + +I     N M +  +L NV  +  ++  + +   V EA   F  +    V Q++ 
Sbjct: 533 KAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ 592

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            ++ L+  L ++  + +A  IF  ++++  +P++ TY+ L+ G  K  N+ +A ++  EM
Sbjct: 593 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              G NPDIVTY I++D LCKAG ++ A  +   ++     P    Y+ +V  Y      
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 712

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
             A     EM   G+  D  +YN ++   CK  KF+    + ++M  KG A ++ + N +
Sbjct: 713 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTL 771

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           + G    G+  EA  +   MI K    +  TYT +I   C+ G + +A ++W  M+ +  
Sbjct: 772 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 831

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +P+  T++ L++G  + G +S+   L E+M+ KGI P   T+  +     +EG  +V++ 
Sbjct: 832 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG--NVMEA 889

Query: 466 LQEKMNLLVK 475
            + K  +LVK
Sbjct: 890 CKLKDEILVK 899



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 4/348 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++IE   K       + +   + ++R+L +V+T+ +++   +R  K+ EA   F
Sbjct: 555 NVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIF 614

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + +Q+ G+  N   +N L+S  CK  NV KA ++ + M  + I PD  TY+IL++G  K 
Sbjct: 615 SELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA 674

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + RA+ +F ++   G  P+ VTY  MVD  CK+     A  +++ M      P +FIY
Sbjct: 675 GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 734

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +V+++    E + E A+D F EM + G  + V+ +N LI  +CK+ K +    +L++M  
Sbjct: 735 NVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIE 793

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           K   PN  T   +++     G   EA R++  M  +     A TYT ++  +   G + +
Sbjct: 794 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 853

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
              +++ M  K   P   T+ V+I+  C +G V ++C L ++++ KG+
Sbjct: 854 VSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 901



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 188/393 (47%), Gaps = 20/393 (5%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQ----IMWDLV-NAMRTKRMLNVETFCIIMRKYAR 143
           K++    +V  Y  +I  L +    Q    I+ ++V N ++     N   +  +M  +A+
Sbjct: 408 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP----NAVVYTTLMTAHAK 463

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKT 202
             +VEE+      M++ G+  ++  +N L+   CK+K + +A+  + + ++ R  P++ T
Sbjct: 464 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 523

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y   ++G+ K   +  A   F EM+  G  P++  Y  +++  CK G V EA  + + + 
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 583

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           S         YSVL+H      ++ +A   F E+++ G+L +   YN+LI   CK     
Sbjct: 584 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 643

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-----RRMIKLCEADADTY 377
              ++L++M  KG+ P+  T NI+++GL   GE + A  +F     R +   C     TY
Sbjct: 644 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV----TY 699

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             M+  +C+      AF++ + M L+   P    ++V++N  C +     +  L ++M+E
Sbjct: 700 AAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE 759

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           KG   S  +F  L +   K G+      L E+M
Sbjct: 760 KGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEM 791



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 163/359 (45%), Gaps = 52/359 (14%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N   F ++M  Y ++  + EAV  F   + +    +L + N LL  L K   V    ++F
Sbjct: 153 NSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF 212

Query: 190 DCM-KDRFIPDSKTYS-----------------ILLEGWGKDPNLPRAREIFREMVDTGC 231
           D M   + +PD  TY+                 +LLE   K   L  A E+ R MVD G 
Sbjct: 213 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGL 272

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD+ TY I+++  C   R  EA  ++  M     +P    Y+ L+  +  +  IE A  
Sbjct: 273 VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFR 332

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
              EM   GI A++ ++N L+   CKA K +    ++++M  KGV P             
Sbjct: 333 IKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEP------------- 379

Query: 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
                                D+ TY+++I+  C+G  + +AF++   MK ++  P++ T
Sbjct: 380 ---------------------DSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 418

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +SV+INGLC  G +  +  +L +M+  G++P+   +  L     KEGR +  + + E+M
Sbjct: 419 YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 477



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 155/337 (45%), Gaps = 19/337 (5%)

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--------- 195
            KVE     F+ M  + V  ++  +  ++SA CK  NV+ A+ +   M ++         
Sbjct: 203 NKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIE 262

Query: 196 ---------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
                     +PD  TY IL+ G+  +     A+ +  EM+D G  P+ +TY  ++D   
Sbjct: 263 LKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFM 322

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + G +++A  I   M +        I++ L++      ++E A++   EM + G+  D  
Sbjct: 323 RQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQ 382

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y+ LI   C+       + +L +M  + +AP   T ++I+NGL   G       + R M
Sbjct: 383 TYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREM 442

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +    + +A  YT ++    + G +E++  + + M+ +  +P +  ++ LI G C    +
Sbjct: 443 VMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 502

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
            ++   L +M+E+ +RP+  T+G       K G  ++
Sbjct: 503 EEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEI 539



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 7/280 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+ +I+ L K  + +   +L + +  + +  N  T+  ++  Y + +    A     
Sbjct: 661 IVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLE 720

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
            M   GV  +   +N +L+  CK +   KA ++F  M ++    + +++ L+EG+ K   
Sbjct: 721 EMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGK 780

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +  EM++    P+ VTY  ++D  CKAG + EA  +   M      PT+  Y+ 
Sbjct: 781 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 840

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+H Y     + +    F EM   GI  D   Y  +I A+C+        ++  ++  KG
Sbjct: 841 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 900

Query: 336 VAPNS------RTCNIILNGLIGRGETDEAYRVFRRMIKL 369
           +   S       TC++I  G    G  DEA  V R M+K 
Sbjct: 901 MPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKF 940



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 17/202 (8%)

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           IVK   S    P S I+ +L+ +Y     + +AV+ FL  +       +   N+L+G   
Sbjct: 141 IVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLL 200

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376
           K NK +  ++V   M +  V P+  T   +++     G   +A RV              
Sbjct: 201 KGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV-------------- 246

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
              +++M  +   L++A ++ + M  K  +P ++T+ +LING C +    ++ ++L +MI
Sbjct: 247 ---LLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI 303

Query: 437 EKGIRPSGETFGKLRKLLIKEG 458
           + G++P   T+  L    +++G
Sbjct: 304 DVGLKPEPITYNALIDGFMRQG 325


>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 207/409 (50%), Gaps = 48/409 (11%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           ++P+  ++ ALD  G+ ++ ++V ++L K      +AF FF WA  Q  Y H  RAY+ M
Sbjct: 247 ANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEM 306

Query: 104 IESLA----KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           I+ L+    K++Q++I+ D+++ M+   K+ + VE   +I+RKY                
Sbjct: 307 IDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE-------------- 352

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVR-KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
                 ++LA     L    K K +R K Q           P+    ++LL+   K+P+ 
Sbjct: 353 ------KHLAH----LHKFAKKKKIRVKTQ-----------PEINALNLLLDALCKNPS- 390

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIY 273
            R   +  EM++ G  PD  TY   +D  CKAG V EA  + + M    ST+  PT+  Y
Sbjct: 391 -RGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTY 449

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++      +R E+      +M  +G+L DV+ Y  +I   C A K +  Y+ L++M +
Sbjct: 450 AIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 509

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG  P+  T N  L+ L    +++EA  ++ RMI+  C     T+ M+I MF + GE + 
Sbjct: 510 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDG 569

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           AF+ W  M  +       T+ V+I GL +   + D+C LL++++ KGI+
Sbjct: 570 AFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIK 618



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 4/171 (2%)

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV---APNSRTCNIILNGLI 351
           EM + G   D   YN  I +FCKA        + + M +KG    +P ++T  I++  L+
Sbjct: 398 EMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALV 457

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
               T+E +++ + MI      D  TY  +I+  C  G++E+A+K  + M  K + P + 
Sbjct: 458 QSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIV 517

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           T++  ++ LC+     ++  L   MIE G  PS  TF  L  +  + G  D
Sbjct: 518 TYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 568


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 181/340 (53%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + R   +E+A    + M   G+  NL  +N LL+ +CK+  + KA EI   M
Sbjct: 322 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 381

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++ + PDS+TYS+L+EG  +  N+ RA E+  EM      P ++TY ++++ LC+ G +
Sbjct: 382 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 441

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
                I++ M     +P + +Y+ L+  +  E R+E++      M + GIL DV  YN+L
Sbjct: 442 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 501

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  FCKA + +     L +M  + + PN+ T    ++G    GE + A R F  M+    
Sbjct: 502 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGV 561

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +   YT +I+  C+ G + +AF V++++  +R +  + T+SVLI+GL   G + ++  
Sbjct: 562 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 621

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  ++ EKG+ P+  T+  L     K+G  D    L E+M
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 185/343 (53%), Gaps = 2/343 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N   F ++M  Y ++  + EAV  F   + +    +L + N LL  L K   V    ++F
Sbjct: 144 NSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF 203

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M   + +PD  TY+ ++    K  N+  A+ +  EM + GC+P++VTY +++  LC+A
Sbjct: 204 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRA 263

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +DEA+ + +SM      P  + Y +L++ + +E R  +A    LEM   G+  +   Y
Sbjct: 264 RLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITY 323

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           NALI  F +    +  +R+  +M + G+  N    N +LNG+   G+ ++A  + + M+ 
Sbjct: 324 NALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 383

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  E D+ TY+++I+  C+G  + +AF++   MK ++  P++ T+SV+INGLC  G +  
Sbjct: 384 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQG 443

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  +L +M+  G++P+   +  L     KEGR +  + + E+M
Sbjct: 444 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 207/430 (48%), Gaps = 26/430 (6%)

Query: 69  VLEKFRNAGTL-----------AFCFFKWAEKQQNY-----EHSVR----AYHSMIESLA 108
           +LE+ R  G L            FC  K  E+ + Y     E  +R     Y + I+  +
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 541

Query: 109 KIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           K  + +I     N M +  +L NV  +  ++  + +   V EA   F  +    V Q++ 
Sbjct: 542 KAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ 601

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            ++ L+  L ++  + +A  IF  ++++  +P++ TY+ L+ G  K  N+ +A ++  EM
Sbjct: 602 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              G NPDIVTY I++D LCKAG ++ A  +   ++     P    Y+ +V  Y      
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
             A     EM   G+  D  +YN ++   CK  KF+    + ++M  KG A ++ + N +
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTL 780

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           + G    G+  EA  +   MI K    +  TYT +I   C+ G + +A ++W  M+ +  
Sbjct: 781 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 840

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +P+  T++ L++G  + G +S+   L E+M+ KGI P   T+  +     +EG  +V++ 
Sbjct: 841 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG--NVMEA 898

Query: 466 LQEKMNLLVK 475
            + K  +LVK
Sbjct: 899 CKLKDEILVK 908



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 195/377 (51%), Gaps = 5/377 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++IE   K       + +   + ++R+L +V+T+ +++   +R  K+ EA   F
Sbjct: 564 NVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIF 623

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + +Q+ G+  N   +N L+S  CK  NV KA ++ + M  + I PD  TY+IL++G  K 
Sbjct: 624 SELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA 683

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + RA+ +F ++   G  P+ VTY  MVD  CK+     A  +++ M      P +FIY
Sbjct: 684 GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 743

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +V+++    E + E A+D F EM + G  + V+ +N LI  +CK+ K +    +L++M  
Sbjct: 744 NVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIE 802

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           K   PN  T   +++     G   EA R++  M  +     A TYT ++  +   G + +
Sbjct: 803 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 862

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-R 451
              +++ M  K   P   T+ V+I+  C +G V ++C L ++++ KG+  S   +  L +
Sbjct: 863 VSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQ 922

Query: 452 KLLIKEGREDVLKFLQE 468
            L  KE   +VLK L E
Sbjct: 923 ALCKKEEFFEVLKLLNE 939



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 188/393 (47%), Gaps = 20/393 (5%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQ----IMWDLV-NAMRTKRMLNVETFCIIMRKYAR 143
           K++    +V  Y  +I  L +    Q    I+ ++V N ++     N   +  +M  +A+
Sbjct: 417 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP----NAVVYTTLMTAHAK 472

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKT 202
             +VEE+      M++ G+  ++  +N L+   CK+K + +A+  + + ++ R  P++ T
Sbjct: 473 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 532

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y   ++G+ K   +  A   F EM+  G  P++  Y  +++  CK G V EA  + + + 
Sbjct: 533 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 592

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           S         YSVL+H      ++ +A   F E+++ G+L +   YN+LI   CK     
Sbjct: 593 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 652

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-----RRMIKLCEADADTY 377
              ++L++M  KG+ P+  T NI+++GL   GE + A  +F     R +   C     TY
Sbjct: 653 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV----TY 708

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             M+  +C+      AF++ + M L+   P    ++V++N  C +     +  L ++M+E
Sbjct: 709 AAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE 768

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           KG   S  +F  L +   K G+      L E+M
Sbjct: 769 KGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEM 800



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 130/309 (42%), Gaps = 36/309 (11%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+ +I+ L K  + +   +L + +  + +  N  T+  ++  Y + +    A     
Sbjct: 670 IVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLE 729

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
            M   GV  +   +N +L+  CK +   KA ++F  M ++    + +++ L+EG+ K   
Sbjct: 730 EMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGK 789

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +  EM++    P+ VTY  ++D  CKAG + EA  +   M      PT+  Y+ 
Sbjct: 790 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILAD------------------------------- 304
           L+H Y     + +    F EM   GI  D                               
Sbjct: 850 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 909

Query: 305 ----VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
               VA Y+ALI A CK  +F  V ++L ++   G      TC++I  G    G  DEA 
Sbjct: 910 MPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAA 969

Query: 361 RVFRRMIKL 369
            V R M+K 
Sbjct: 970 EVLRSMVKF 978



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 123/254 (48%), Gaps = 1/254 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+S  + +L++ + K   L  A  +F    +    P +++   ++  L K  +V+    +
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M +    P  + Y+ ++  +     ++DA    LEM + G   ++  YN +IG  C+
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
           A        + + M  KG+ P+  T +I++NG      + EA  +   MI +  + +  T
Sbjct: 263 ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPIT 322

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I  F + G++E+AF++   M       ++  ++ L+NG+C  G +  +  ++++M+
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 382

Query: 437 EKGIRPSGETFGKL 450
           EKG+ P  +T+  L
Sbjct: 383 EKGVEPDSQTYSLL 396



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           IVK   S    P S I+ +L+ +Y     + +AV+ FL  +       +   N+L+G   
Sbjct: 132 IVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLL 191

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K NK +  ++V   M +  V P+  T   +++     G   +A RV   M  K C  +  
Sbjct: 192 KGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLV 251

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY ++I   C+   L++A ++ + M  K  +P ++T+ +LING C +    ++ ++L +M
Sbjct: 252 TYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM 311

Query: 436 IEKGIRPSGETFGKLRKLLIKEG 458
           I+ G++P   T+  L    +++G
Sbjct: 312 IDVGLKPEPITYNALIDGFMRQG 334


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 196/410 (47%), Gaps = 10/410 (2%)

Query: 68  DVLEKFRNAGTLA--FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           DVL++ +    L+    FF        ++H+   Y  MIE L +  +  ++  ++  M+ 
Sbjct: 43  DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKM 102

Query: 126 KRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             +   E  F  I+  Y RV   E+A+  F  + ++G    +  +N LL AL      + 
Sbjct: 103 DGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQM 162

Query: 185 AQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
              ++  MK D  IP+  TY+ILL+   K+  +  A ++F EM + GC PD VTY  MV 
Sbjct: 163 INPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVS 222

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LCKAG++D+A  +         +P+  +Y+ L+     E RIE A+    EM  NG+  
Sbjct: 223 SLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDP 277

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +V  Y+ +I + C +   +  + +   M  +G   N  T   ++ G   RG+  EA  ++
Sbjct: 278 NVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLW 337

Query: 364 RRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           + MI+  CE +   Y  +I   C  G LE+A +V   M+    +P++ T+S+LI+G    
Sbjct: 338 KLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKS 397

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           G +  +      MI  G RP+  T+  +  +L K    D    L EKM L
Sbjct: 398 GDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTL 447



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 190/361 (52%), Gaps = 4/361 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + +V +Y  +I SL      ++ + L   M  +    N+ TF  +++      K+ EA+ 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
            + +M + G   N+ A+N L+  LC + ++ +A ++ D M +   +P+  TYSIL++G+ 
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K  +L  A E +  M+  GC P++VTY  MVDVLCK    D+A  +V+ M    C P + 
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTI 455

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++  +       R+E A+     M+ +G L ++  YN L+ A  + NK++  + + +++
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-RRMIKLCEADADTYTMMIKMFCQGGEL 390
            ++ + PN  T N +L G    G   EA ++F + +++    D+ TY  MI  +C+ G++
Sbjct: 516 EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKV 575

Query: 391 EKAFK-VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + A + V +   +K + P + T++ LI G C+   + ++   L+  I +GI P+  T+  
Sbjct: 576 KIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNA 635

Query: 450 L 450
           L
Sbjct: 636 L 636



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 183/376 (48%), Gaps = 7/376 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +VR Y+ ++++L    ++Q++  L   M+   ++ NV T+ I+++   +  +V+ A   F
Sbjct: 143 TVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLF 202

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M   G   +   +  ++S+LCK+  +  A+E    +  RF P    Y+ L++G  K+ 
Sbjct: 203 VEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE----LAGRFKPSVPVYNALIDGMCKEG 258

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A ++  EM+D G +P++V+Y  +++ LC +G V+ A  +   M    C      ++
Sbjct: 259 RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFT 318

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+    +  ++ +A+D +  M ++G   +V  YN LI   C     +   +V   M   
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G  PN  T +I+++G    G+   A   + RMI   C  +  TYT M+ + C+    ++A
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             + + M L+   P+  TF+  I GLC  G V  +  LLE M   G  P+  T+ +L   
Sbjct: 439 NSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498

Query: 454 LIKEGR-EDVLKFLQE 468
           L +  + E+     QE
Sbjct: 499 LFRMNKYEEAFGLFQE 514



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 177/375 (47%), Gaps = 6/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            Y +M+ SL K  +     +L    +     +V  +  ++    +  ++E A+     M 
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKEGRIEVAIKLLGEMM 271

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             GV  N+ +++ ++++LC S NV  A  +F  M  R    +  T++ L++G      L 
Sbjct: 272 DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLY 331

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++++ M+  GC P++V Y  ++  LC  G ++EAL +   M  + C P    YS+L+
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +     +  A +T+  M  +G   +V  Y  ++   CK + F     +++ M  +G  
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN+ T N  + GL G G  + A ++  RM    C  +  TY  ++    +  + E+AF +
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ ++ +   P++ T++ ++ G    G++ ++  L    + +G  P   T+  +     K
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 457 EGREDVLKFLQEKMN 471
           +G+  +   L E+++
Sbjct: 572 QGKVKIAAQLVERVS 586



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 16/292 (5%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQ 112
           + +SG   +      +++ F  +G L      W          +V  Y  M++ L K   
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK--- 431

Query: 113 YQIMWDLVNAMRTKRML-----NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
              M+D  N++  K  L     N  TF   ++      +VE A+     MQ +G   N+ 
Sbjct: 432 -NSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNIT 490

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +N LL AL +     +A  +F  ++ R + P+  TY+ +L G+ +   +  A ++F + 
Sbjct: 491 TYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKA 550

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVEN- 284
           +  G  PD +TY  M+   CK G+V  A  +V+ + S     P    Y+ L+  +G  N 
Sbjct: 551 LVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLI--WGACNW 608

Query: 285 -RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
             IE+A+    +    GI  + A +NAL+  F  +        +L D+  KG
Sbjct: 609 MNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 196/410 (47%), Gaps = 10/410 (2%)

Query: 68  DVLEKFRNAGTLA--FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           DVL++ +    L+    FF        ++H+   Y  MIE L +  +  ++  ++  M+ 
Sbjct: 43  DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKM 102

Query: 126 KRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             +   E  F  I+  Y RV   E+A+  F  + ++G    +  +N LL AL      + 
Sbjct: 103 DGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQM 162

Query: 185 AQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
              ++  MK D  IP+  TY+ILL+   K+  +  A ++F EM + GC PD VTY  MV 
Sbjct: 163 INPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVS 222

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LCKAG++D+A  +         +P+  +Y+ L+     E RIE A+    EM  NG+  
Sbjct: 223 SLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDP 277

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +V  Y+ +I + C +   +  + +   M  +G   N  T   ++ G   RG+  EA  ++
Sbjct: 278 NVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLW 337

Query: 364 RRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           + MI+  CE +   Y  +I   C  G LE+A +V   M+    +P++ T+S+LI+G    
Sbjct: 338 KLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKS 397

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           G +  +      MI  G RP+  T+  +  +L K    D    L EKM L
Sbjct: 398 GDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTL 447



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 190/361 (52%), Gaps = 4/361 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + +V +Y  +I SL      ++ + L   M  +    N+ TF  +++      K+ EA+ 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
            + +M + G   N+ A+N L+  LC + ++ +A ++ D M +   +P+  TYSIL++G+ 
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K  +L  A E +  M+  GC P++VTY  MVDVLCK    D+A  +V+ M    C P + 
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTM 455

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++  +       R+E A+     M+ +G L ++  YN L+ A  + NK++  + + +++
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-RRMIKLCEADADTYTMMIKMFCQGGEL 390
            ++ + PN  T N +L G    G   EA ++F + +++    D+ TY  MI  +C+ G++
Sbjct: 516 EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKV 575

Query: 391 EKAFK-VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + A + V +   +K + P + T++ LI G C+   + ++   L+  I +GI P+  T+  
Sbjct: 576 KIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNA 635

Query: 450 L 450
           L
Sbjct: 636 L 636



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 183/376 (48%), Gaps = 7/376 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +VR Y+ ++++L    ++Q++  L   M+   ++ NV T+ I+++   +  +V+ A   F
Sbjct: 143 TVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLF 202

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M   G   +   +  ++S+LCK+  +  A+E    +  RF P    Y+ L++G  K+ 
Sbjct: 203 VEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE----LAGRFKPSVPVYNALIDGMCKEG 258

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A ++  EM+D G +P++V+Y  +++ LC +G V+ A  +   M    C      ++
Sbjct: 259 RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFT 318

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+    +  ++ +A+D +  M ++G   +V  YN LI   C     +   +V   M   
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G  PN  T +I+++G    G+   A   + RMI   C  +  TYT M+ + C+    ++A
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             + + M L+   P+  TF+  I GLC  G V  +  LLE M   G  P+  T+ +L   
Sbjct: 439 NSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498

Query: 454 LIKEGR-EDVLKFLQE 468
           L +  + E+     QE
Sbjct: 499 LFRMNKYEEAFGLFQE 514



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 177/375 (47%), Gaps = 6/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            Y +M+ SL K  +     +L    +     +V  +  ++    +  ++E A+     M 
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKEGRIEVAIKLLGEMM 271

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             GV  N+ +++ ++++LC S NV  A  +F  M  R    +  T++ L++G      L 
Sbjct: 272 DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLY 331

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++++ M+  GC P++V Y  ++  LC  G ++EAL +   M  + C P    YS+L+
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +     +  A +T+  M  +G   +V  Y  ++   CK + F     +++ M  +G  
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN+ T N  + GL G G  + A ++  RM    C  +  TY  ++    +  + E+AF +
Sbjct: 452 PNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ ++ +   P++ T++ ++ G    G++ ++  L    + +G  P   T+  +     K
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 457 EGREDVLKFLQEKMN 471
           +G+  +   L E+++
Sbjct: 572 QGKVKIAAQLVERVS 586



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 16/292 (5%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQ 112
           + +SG   +      +++ F  +G L      W          +V  Y  M++ L K   
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK--- 431

Query: 113 YQIMWDLVNAMRTKRML-----NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
              M+D  N++  K  L     N  TF   ++      +VE A+     MQ +G   N+ 
Sbjct: 432 -NSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNIT 490

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +N LL AL +     +A  +F  ++ R + P+  TY+ +L G+ +   +  A ++F + 
Sbjct: 491 TYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKA 550

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVEN- 284
           +  G  PD +TY  M+   CK G+V  A  +V+ + S     P    Y+ L+  +G  N 
Sbjct: 551 LVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLI--WGACNW 608

Query: 285 -RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
             IE+A+    +    GI  + A +NAL+  F  +        +L D+  KG
Sbjct: 609 MNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660


>gi|242054767|ref|XP_002456529.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
 gi|241928504|gb|EES01649.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
          Length = 517

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 201/409 (49%), Gaps = 7/409 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           LD  G   S  +V   L + RN+   A   F+WA  Q  Y    RA HSM+  LAK R++
Sbjct: 94  LDGCGAEASEPLVVAALSRLRNSCAAAHAAFRWAAAQPGYAPGRRACHSMLAILAKHRRF 153

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
                L++ MR   M +     +++R++   + V  AV  F  +  +G    +A F+GLL
Sbjct: 154 DAARALLDEMRRASMASPAAVLLLVRRHCAARDVAAAVAAFRALPSFGFDTGVAEFHGLL 213

Query: 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCN 232
           SALC+ KNV+ A+ +    +  F  ++K+++I+L GW     +L  A+  +  M   G +
Sbjct: 214 SALCRYKNVQDAEHLLISCEKEFPFETKSFNIVLNGWCNIVCSLREAKRFWSSMERKGID 273

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
            D+V+YG M+    KAG +   + +   M+     P   +Y+ +V        ++ A   
Sbjct: 274 RDVVSYGSMISCFSKAGSLHSVMKLFNHMNEAGVAPDRKVYNAIVFALAKGRCVKAAKML 333

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              ME+  +  D A +N+LIG  CKA + +    +   M  +G++P+ RT + +LN  + 
Sbjct: 334 VRTMEEKQVAPDTATFNSLIGPLCKARQVQEAMEMFDAMLERGLSPSVRTFHALLN--VA 391

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           R  T E + +  +M +L CE + DTY M+I+ FC+  + E   K+W  M      P    
Sbjct: 392 RNST-EVFDLLDKMKQLQCEPEMDTYIMLIRKFCRWRQHESVEKLWSAMPANGLSPDRSA 450

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           + VLI+GL   G + ++     +M  KG  P  +T   +   L  EGRE
Sbjct: 451 YIVLIHGLFLNGRLEEAAKYYGEMKSKGFSPEKKTEEMITAWL--EGRE 497


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 194/419 (46%), Gaps = 16/419 (3%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH--SVRAYHSMIESLAKIR 111
           L   G+ +S  ++  +L + R A  LA           +     +  AY +++++L +  
Sbjct: 69  LSGGGVSLSQGLLVQILLRLRGASKLALSLLNAVRLHPSVSSPPNADAYDAVVDALGRAH 128

Query: 112 QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFN 170
           Q+   W LV            TF ++ R+Y       +AV  F+ M+ + G   +   F 
Sbjct: 129 QFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGLTRQAVRAFDDMEAFLGREPDAQEFT 188

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
            LL  LCK K  + A E+F+  K ++ P+ K Y+IL+ GW K      A++  ++M+D G
Sbjct: 189 TLLDTLCKYKYPKVAVEVFNKRKYKYEPNEKMYTILIYGWCKVNRSDMAQKFLKDMIDHG 248

Query: 231 CNPDIVTYGIMVDVLCKAGR----------VDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
             P+IVTY I+++ +C+             V+ A  ++K M+     P    YS+++H Y
Sbjct: 249 IEPNIVTYNILLNGICRHASLHPDNRFDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVY 308

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              ++ E  +  F  M+  GI   VA Y ++I       + ++   +L +M S+GV P+ 
Sbjct: 309 SRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSP 368

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVW 397
            T N       GR +   A  ++ +M   C     D  +Y +++ MF +    E   ++W
Sbjct: 369 ATYNCFFKEYRGRKDVSGALELYNKMKAPCSPTAPDIHSYNILLGMFIKLDRHETVMELW 428

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
             M  +   P + ++++L++G C K    ++C    +MIEKG  P   TF    + LI+
Sbjct: 429 NDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFMEMIEKGFLPQKITFETPYRGLIQ 487



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 162/398 (40%), Gaps = 60/398 (15%)

Query: 24  SSEPSTEALDA---AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL- 79
           SS P+ +A DA   A   +    ++ ++V++ A D +    +P     +  ++  AG   
Sbjct: 109 SSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAA---TPRTFAVLARRYVAAGLTR 165

Query: 80  -AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
            A   F   E     E   + + +++++L K +  ++  ++ N  + K   N + + I++
Sbjct: 166 QAVRAFDDMEAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKYEPNEKMYTILI 225

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS----------KNVRKAQEI 188
             + +V + + A      M  +G+  N+  +N LL+ +C+           + V  A+ +
Sbjct: 226 YGWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRTVNAAENL 285

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              M DR I PD  +YSI+L  + +         +FR M D G  P + TY  ++  L  
Sbjct: 286 LKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLAS 345

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVL------------------------------V 277
            GR+++A  ++  M S    P+   Y+                                +
Sbjct: 346 CGRLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKMKAPCSPTAPDI 405

Query: 278 HTYGVE-------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           H+Y +        +R E  ++ + +M +  +  D+  Y  L+  FC   K++   +   +
Sbjct: 406 HSYNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFME 465

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           M  KG  P   T      GLI      +  R +RR+ K
Sbjct: 466 MIEKGFLPQKITFETPYRGLI----QADMLRTWRRLKK 499



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 91/211 (43%), Gaps = 5/211 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++ II+  Y+R  K E  +  F  M+  G+   +A +  ++  L     +  A+ + 
Sbjct: 297 DVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAESLL 356

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP---DIVTYGIMVDVL 245
             M  +   P   TY+   + +    ++  A E++ +M    C+P   DI +Y I++ + 
Sbjct: 357 GEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKM-KAPCSPTAPDIHSYNILLGMF 415

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
            K  R +  + +   M      P    Y++LVH +  + +  +A   F+EM + G L   
Sbjct: 416 IKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFMEMIEKGFLPQK 475

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
             +        +A+  +   R+ K ++ +  
Sbjct: 476 ITFETPYRGLIQADMLRTWRRLKKRVDEESA 506


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 211/431 (48%), Gaps = 22/431 (5%)

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           P++V    L QS  RV                  A  FF W+++Q  Y H    Y  M++
Sbjct: 50  PRLVCAVLLSQSDERV------------------ALDFFFWSDRQWRYRHDPIVYCVMLD 91

Query: 106 SLAKIRQYQIMWDLVNAMRTKRMLNV-ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
            L+K +  Q    ++  M  + +    + FC +M  Y+R  K+  A+    +MQK G+  
Sbjct: 92  VLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEP 151

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIF 223
           NL   N  +  L  +  + KA    + M+   I P+  TY+ L++G+     +  A E+ 
Sbjct: 152 NLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELI 211

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            EM   GC+PD V+Y  ++  LCK  R+ E + +++ M+ T        Y+ L+H     
Sbjct: 212 SEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKH 271

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
              ++A+    E +K G   D   Y+A++ ++CK  +      ++ +M ++G  P+  T 
Sbjct: 272 QHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTY 331

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             I+NG    GE  +A ++ ++M K  C+ +  +YT  +K  CQ G   +A ++ K  + 
Sbjct: 332 TAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEE 391

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED- 461
           + + P+  T+SV+++G   +G +SD+C ++ +MI KG  P+      L + L + GR D 
Sbjct: 392 QWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDE 451

Query: 462 VLKFLQEKMNL 472
             KF++E +N+
Sbjct: 452 AKKFMEECLNM 462



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 39/372 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y++++  L K R+ + + D++  M  TK + +  T+  ++    + Q  +EA+      
Sbjct: 225 SYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREA 284

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           QK G   +   ++ ++ + CK   + +A+EI + M  R  IPD  TY+ ++ G+ +   +
Sbjct: 285 QKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEV 344

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +AR++ ++M   GC P+ V+Y   +  LC+ G   EA  ++K+ +     P +  YSV+
Sbjct: 345 GQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVV 404

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H +  E ++ DA D                                   V+++M  KG 
Sbjct: 405 MHGFRREGKLSDACD-----------------------------------VVREMIGKGF 429

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P     N++L  L   G  DEA +     + + C  +A  +T +I  FCQ  ++E A  
Sbjct: 430 FPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALS 489

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +   M L    P   T++ +I+ L  KG + ++  L   M++KGI P+  T+  +     
Sbjct: 490 LLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYG 549

Query: 456 KEGR-EDVLKFL 466
           + GR ED+L  L
Sbjct: 550 QIGRVEDLLNLL 561



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 185/387 (47%), Gaps = 10/387 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A  F + A+K+  ++     Y ++++S  K  +     ++VN M T+  + +V T+  I+
Sbjct: 277 ALQFLREAQKR-GFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAII 335

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-I 197
             +++  +V +A      M K+G   N  ++   L  LC+  N  +A+E+    ++++  
Sbjct: 336 NGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWT 395

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ TYS+++ G+ ++  L  A ++ REM+  G  P  V   +++  LC+ GRVDEA   
Sbjct: 396 PNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKF 455

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++   +  C   +  ++ ++H +  ++ IE A+    +M  +    D   Y  +I A  K
Sbjct: 456 MEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGK 515

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILN--GLIGRGETDEAYRVFRRMIKLCEADAD 375
             + +    +   M  KG+ P   T   +++  G IGR E  +   +  +M+   E    
Sbjct: 516 KGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVE--DLLNLLDKMLTRQECRT- 572

Query: 376 TYTMMIKMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +  +I+  C  G LE A K+  K ++    I + +T  VL+     KGI   +  +   
Sbjct: 573 AFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDA-NTCHVLMESYLRKGIPLSAYKVACR 631

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRED 461
           M  + + P  +   K+ K L++EG+ +
Sbjct: 632 MFSRSLIPDLKLCEKVCKKLMQEGKSE 658



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 34/273 (12%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ ++M  + R  K+ +A      M   G        N LL +LC+   V +A++  
Sbjct: 397 NAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFM 456

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + C+      ++  ++ ++  + +  ++  A  +  +M  +  +PD VTY  ++D L K 
Sbjct: 457 EECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKK 516

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM------------ 296
           GR++EA  +   M      PT   Y  ++H YG   R+ED ++   +M            
Sbjct: 517 GRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRTAFNQ 576

Query: 297 --EKNGILADVAMYNALIGAFCK------ANKFK-------------NVYRVLKDMNSKG 335
             EK     ++   + L+G   +      AN                + Y+V   M S+ 
Sbjct: 577 VIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLMESYLRKGIPLSAYKVACRMFSRS 636

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + P+ + C  +   L+  G+++EA  +F R ++
Sbjct: 637 LIPDLKLCEKVCKKLMQEGKSEEADNLFLRFVE 669


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 197/407 (48%), Gaps = 44/407 (10%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIR 111
           A + S +R++  + + +L    +    A  FF WA+ +   Y H+  A   M++ L K R
Sbjct: 74  AAECSEVRLTSGVADSLLRGCGDCWKPALGFFLWAQSRGGGYSHTPYACSRMVDLLGKTR 133

Query: 112 QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           Q   MWDL++ M  + ++ V+T    +R+ A  +K  +A+  F+ ++  G+ +N    N 
Sbjct: 134 QIDRMWDLLSEMHCRGLVTVDTVAKSIRRLAAARKWRDAILLFDQLEDLGLERNTETMNV 193

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-------------------GK 212
           LL ALCK K V  A+E+F  +     PD+ T++I + GW                   G 
Sbjct: 194 LLDALCKEKKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEALWTIEEMKTRGF 253

Query: 213 DP----------------NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P                N  R  E+   M   GC+P+++TY +++  L K  R +EAL 
Sbjct: 254 PPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLTKCERFEEALS 313

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMYNALIGAF 315
           +   M S+ C+P +  Y+ L++  G    + +A   F +EM +NG+L +VA YN +I   
Sbjct: 314 VSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISIL 373

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE---- 371
           C+  +  +   VLK+M ++   P+ +T   +L  L+  G   +A  V R + +L +    
Sbjct: 374 CQYGRDDDALGVLKEMEAQSCKPDLQTYQPLLRLLL--GRRGQAAAVHRLLSELRDRNGL 431

Query: 372 -ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
             D DTYT++I   C+ GE + A+ ++  M     +P   T  +L++
Sbjct: 432 GLDLDTYTLLIHGLCKVGETDWAYLLYDEMVGSEIVPRPRTCELLLS 478



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 7/221 (3%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL--VHTYGVENRIEDAVDTFLEMEK 298
           MVD+L K  ++D    ++  M    CR    + +V   +       +  DA+  F ++E 
Sbjct: 125 MVDLLGKTRQIDRMWDLLSEMH---CRGLVTVDTVAKSIRRLAAARKWRDAILLFDQLED 181

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G+  +    N L+ A CK  K +    V   M S  +AP++ T NI ++G       DE
Sbjct: 182 LGLERNTETMNVLLDALCKEKKVELAREVFV-MLSPHIAPDAYTFNIFVHGWCSVRRIDE 240

Query: 359 AYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A      M  +       TYT +++ +C+     + ++V   M  +   P++ T+++++ 
Sbjct: 241 ALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMT 300

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            L       ++  + + M   G +P    +  L  LL + G
Sbjct: 301 SLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAG 341


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 192/380 (50%), Gaps = 6/380 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAV 151
           E  V  Y+++I+ L K+ + +    LV  MR++   M N  T+  ++  Y +   +E A 
Sbjct: 377 EPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAAR 436

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW 210
             F+ M K GV  N+   N L+  +CK   +  A E F+ M+ + +  ++ TY+ L+  +
Sbjct: 437 ELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
               N+ +A E+F EM++ GC+PD + Y  ++  L +AG++D A  ++  M      P  
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDI 556

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             ++VL++ +  +N++++A +   EME  GI  D   YN LI  F K   F   +R++K 
Sbjct: 557 VSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKK 616

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGG 388
           M  +G+ P   T   +++     G  DEA ++FR M    +   +T  Y ++I   C+  
Sbjct: 617 MVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKN 676

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++ A  +   MK+K   P+ +TF+ +  GL +K  +S +  L++ M E    P   T  
Sbjct: 677 QVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITME 736

Query: 449 KLRKLLIKEGREDVLK-FLQ 467
            L + L   G    LK F+Q
Sbjct: 737 ILTEWLSAVGETAKLKSFVQ 756



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 169/350 (48%), Gaps = 11/350 (3%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++ +  R  + + A    + + K G     A+ N LL+AL +++  ++   +   MK+  
Sbjct: 276 LISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMD 335

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-----PDIVTYGIMVDVLCKAGR 250
           I P+  T+ IL+    K   +  A E+F +M     N     PD++TY  ++D LCK GR
Sbjct: 336 IQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGR 395

Query: 251 VDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            +E LG+V+ M S   C P +  Y+ L+  Y   + IE A + F +M K+G+  +V   N
Sbjct: 396 QEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLN 455

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            L+   CK  +         +M  KG+  N+ T   ++         ++A  +F  M++ 
Sbjct: 456 TLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            C  DA  Y  +I    Q G+L++A  V   MK   F P + +F+VLING C K  + ++
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
             +L++M   GI+P G T+  L     K G       L +KM   VKE L
Sbjct: 576 YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM---VKEGL 622



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 165/415 (39%), Gaps = 67/415 (16%)

Query: 80  AFCFFKWAEKQQN--------------YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           A  FF W +                  +EH+ R  +S          +  + DL    ++
Sbjct: 103 ALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNS----------HNKLLDLFKTSKS 152

Query: 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
            ++ L+V    +++R + R Q V+E+   +N +       ++   N L+  L +   V  
Sbjct: 153 HKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCPSRRLTHIR--NILIDVLFRKGRVDD 210

Query: 185 AQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           A  + D M   K  F P+S T  I+     K   + RA       VD             
Sbjct: 211 ALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRA-------VDE------------ 251

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
                     +E +G+V         P S   + L+       R + A D    + K G 
Sbjct: 252 ----------EEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGG 301

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           + + A  NAL+ A  +A +FK +  +L +M    + PN  T  I++N L      DEA  
Sbjct: 302 VMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALE 361

Query: 362 VFRRMIK------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSV 414
           VF +M        L E D  TY  +I   C+ G  E+   + + M+ + R +P+  T++ 
Sbjct: 362 VFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNC 421

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           LI+G C   ++  +  L + M + G+ P+  T   L   + K GR    ++F  E
Sbjct: 422 LIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNE 476


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 148/288 (51%), Gaps = 13/288 (4%)

Query: 31  ALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           +LD +++IS +   SP ++        G+R    + +               FF WA  Q
Sbjct: 93  SLDFSQTISTVHSISPSIIRHVIEQSGGVRHGIPVPQ------------VLAFFNWASYQ 140

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
             ++ S  A++ M++   K+R + + W +++ M+ + + + VETF I+MR+Y R     E
Sbjct: 141 DGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAE 200

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
           A++ FN M+ Y    +  AF+ L+S LC+ +   +AQE FD +KD+F PD   Y+ L+ G
Sbjct: 201 AIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDKFEPDVIVYTNLVRG 260

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           W +  N+  A  +F EM   G  P++ TY I++D LC+ G++  A  +   M    C+P 
Sbjct: 261 WCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPN 320

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           S  Y+ L+  +    R E  +  + +M++ G   D   YN LI   CK
Sbjct: 321 SITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCK 368



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 3/228 (1%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRA 219
           G  ++  AFN ++    K +    A  + D MK R +  + +T+SIL+  + +      A
Sbjct: 142 GFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEA 201

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
              F  M D  C PD + + I++ +LC+  R  EA     S+      P   +Y+ LV  
Sbjct: 202 IHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDKF-EPDVIVYTNLVRG 260

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           +     I +A   F EM+  GI  +V  Y+ +I + C+  +    + V  +M   G  PN
Sbjct: 261 WCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPN 320

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           S T N ++   +  G T++  +V+ +M +L CE D  TY  +I+  C+
Sbjct: 321 SITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCK 368



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 88/182 (48%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+   +   V  ++ L+  + +A            M      P+    +I+++ L  +  
Sbjct: 173 MKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRR 232

Query: 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             EA   F  +    E D   YT +++ +C+ G + +A +V+  MK+    P+++T+S++
Sbjct: 233 ASEAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIV 292

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           I+ LC  G ++ +  +  +M++ G +P+  T+  L ++ +K GR + +  +  +M  L  
Sbjct: 293 IDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGC 352

Query: 476 EP 477
           EP
Sbjct: 353 EP 354


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 232/474 (48%), Gaps = 22/474 (4%)

Query: 20  RRYNSS------EPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLE 71
           R +NSS        S++  + A+ ISKI+L+  +P    +++L  +GI ++P ++   L 
Sbjct: 10  RNFNSSITRFFSSISSQTQNDAELISKILLTHHNPYHFTESSLQLNGITLTPILLTQTLT 69

Query: 72  KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV 131
             ++   +A     +++   N   S+++Y+ +I+ ++K+ Q+ +   L+  M    +   
Sbjct: 70  LLKHHSKIALSLHNFSKSLPNPPLSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPT 129

Query: 132 ET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA-AFNGLLSALCKSKNVRKAQEIF 189
            T F I++++        +AV  FN ++ Y  T+  +  F  LL  LCK   V+ A E+F
Sbjct: 130 PTTFFILIKRLISANLTRQAVRAFNEIESYTDTKLTSDHFTYLLDTLCKYGYVKHACELF 189

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           +   +RF+ D K Y++L+ GW K      A     EM   G  P++VTY ++++ +C+  
Sbjct: 190 NRNSNRFVADVKMYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNVILNGICRKA 249

Query: 250 R----------VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
                      + +A  +   M  +   P    +S+++H Y   ++ +  +D    M++ 
Sbjct: 250 SLHPEERFERTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEK 309

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           GI  +V  Y ++I   C   + +    ++ +M   GV+P + T N       GR + D+A
Sbjct: 310 GICPNVVTYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKA 369

Query: 360 YRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            + F++M +  LCE    TY ++I MF +   +    ++W  M      P + +++VLI+
Sbjct: 370 LKFFKKMKEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIH 429

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           GLC+     ++C    +MIEKG  P   TF  L + LI+       + L+++++
Sbjct: 430 GLCESKKWREACQYFVEMIEKGFLPQKVTFETLYRGLIQSDMLRTWRRLKKRLD 483



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 112/250 (44%), Gaps = 41/250 (16%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V +F I++  Y+R  K +  +    +M++ G+  N+  +  ++  LC    + +A+++ 
Sbjct: 279 DVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTYTSVIKCLCSCGRIEEAEDLI 338

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCK 247
           D M ++   P + TY+   + +    +  +A + F++M + G C P   TYG+++ +  K
Sbjct: 339 DEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTTHTYGVLIAMFLK 398

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           A    + +G+VK +                               + +M ++G+  D+  
Sbjct: 399 A----DMIGVVKEI-------------------------------WNDMMESGVGPDLDS 423

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI   C++ K++   +   +M  KG  P   T   +  GLI      +  R +RR+ 
Sbjct: 424 YTVLIHGLCESKKWREACQYFVEMIEKGFLPQKVTFETLYRGLI----QSDMLRTWRRLK 479

Query: 368 KLCEADADTY 377
           K  + ++ T+
Sbjct: 480 KRLDQESITF 489


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 9/394 (2%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           IR     V DV E       LA  F  + EK   ++H   +Y S+I  LA+ R+++ +  
Sbjct: 46  IRERIPFVTDVKEVKDPCEALAL-FENYHEK--GFKHHYPSYSSLIYKLARSRRFEAVET 102

Query: 119 LVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           ++  +R + +   ET F  +++ Y +   VE+ +  F+ M  +   + L +FN LL+ L 
Sbjct: 103 ILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLV 162

Query: 178 KSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
                 KA EIF    +  F P+S +Y+I+++GW K     +A  +F EM++ G  P +V
Sbjct: 163 DCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVV 222

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY   + VLC+ G +D AL + K+M      P +  Y++L+  +    + ++A     +M
Sbjct: 223 TYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           E +G       Y  L+    K      +  +L +M  + + P+  T NI++N L   G+ 
Sbjct: 283 EFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKV 342

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +AY+V  +M +  C+ +A TY MMI  +C  G+ + A K+   M +    P + TF+ L
Sbjct: 343 GDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASL 402

Query: 416 INGLCDKGIVSDS--CVLLEDMIEKGIRPSGETF 447
           + GL  KG  +D   C +LE+M ++ +R   ET+
Sbjct: 403 VVGLL-KGENNDDYVCFVLEEMEKRQLRFDAETW 435



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 3/260 (1%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           KDP    A  +F    + G      +Y  ++  L ++ R +    I+  + +   R    
Sbjct: 60  KDP--CEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNET 117

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           ++  L+  YG  + +E  ++ F +M        +  +N L+      ++F     + +  
Sbjct: 118 LFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQA 177

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
                 PNS + NI++ G I +G  ++A  +F  M+ K  +    TY   + + C+ GE+
Sbjct: 178 YEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEM 237

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + A  ++K M  K   P+  T+++L+ G C  G   ++  L+ DM   G +     +G L
Sbjct: 238 DTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVL 297

Query: 451 RKLLIKEGREDVLKFLQEKM 470
              L K G  D ++ L  +M
Sbjct: 298 MTHLGKTGNIDEMESLLNEM 317


>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 407

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 200/397 (50%), Gaps = 17/397 (4%)

Query: 55  DQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ 114
           DQS      + V + L  + N    A  FF W EK+  + H+   ++ MI+ L K  +++
Sbjct: 1   DQSS--YDQKTVCEALSCYINDWQKALEFFNWVEKESGFRHTTETFNRMIDILGKYFEFE 58

Query: 115 IMWDLVNAM--RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
             W L+N M    + + N  TF I+ ++Y     V+EA+  ++ +  + +  + + +N L
Sbjct: 59  TCWALINRMIGNPESLPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDDTSFYN-L 117

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFIP------DSKTYSILLEGWGKDPNLPRAREIFREM 226
           + ALC+ K+V +A+E+  C     I       ++K ++++L GW K     + +E + +M
Sbjct: 118 VDALCEHKHVVEAEEL--CFGKNVIAHGFSVSNTKIHNLILRGWSKLGWWGKCKEYWDKM 175

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              G   D+ +Y I +D++CK+G+  +A+ + K M S   +     Y+ ++   G    +
Sbjct: 176 DTEGVPKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGV 235

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           E  +  F EM + G   +VA +N +I   C+  + ++ YR+L +M  KG  P+S +   +
Sbjct: 236 EFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKKGCQPDSISYMCL 295

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
            + L    +  E   +F RMI+       DTY M+++ F + G L+    VWK MK    
Sbjct: 296 FSRL---EKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGD 352

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            P    ++ +I+ L  KG++  +    E+MIE+G+ P
Sbjct: 353 TPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP 389



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 112/247 (45%), Gaps = 7/247 (2%)

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRI 286
           ++G      T+  M+D+L K    +    ++  M  +    P    + ++   Y   + +
Sbjct: 34  ESGFRHTTETFNRMIDILGKYFEFETCWALINRMIGNPESLPNHVTFRIVFKRYVTAHLV 93

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL--KDMNSKGVA-PNSRTC 343
           ++A+D + +++   +  D + YN L+ A C+         +   K++ + G +  N++  
Sbjct: 94  QEAIDAYDKLDDFNLRDDTSFYN-LVDALCEHKHVVEAEELCFGKNVIAHGFSVSNTKIH 152

Query: 344 NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N+IL G    G   +    + +M  +    D  +Y++ + + C+ G+  KA K++K MK 
Sbjct: 153 NLILRGWSKLGWWGKCKEYWDKMDTEGVPKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKS 212

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-ED 461
           +R    +  ++ +I  +     V     +  +M E+G  P+  T   + KLL ++GR  D
Sbjct: 213 RRIKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRD 272

Query: 462 VLKFLQE 468
             + L E
Sbjct: 273 AYRMLDE 279


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 184/373 (49%), Gaps = 7/373 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY+++I    +        + +  M  +++  +V T+ I++    +  K ++A    + M
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEM 287

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              GVT +   FN ++  LCK+    +A  +   M +R   P   TY+ L+ G  K  N+
Sbjct: 288 VDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNV 347

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA+++  E V +G  PD+VTY I+ D LCK GR+DEA  +VK M    C P    Y+ L
Sbjct: 348 DRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTL 407

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +      ++ E A +    +  +G + DV  Y  ++   CK  +     ++++ M  +G 
Sbjct: 408 IDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGC 467

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T   ++ GL   G  DEA+ +F+ M+ K C ADA  Y  ++  +C+    ++A K
Sbjct: 468 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 527

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V   +   R  P +  ++ L++G C +G + +   + EDM  +G  P+ +T+  +   L 
Sbjct: 528 VVDGI---RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLC 584

Query: 456 KEGRED-VLKFLQ 467
           K G+ D    FL+
Sbjct: 585 KHGKVDEAFPFLE 597



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 189/405 (46%), Gaps = 36/405 (8%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++N   S   Y+++I  L K +      DLV+   +   + +V T+ I+     +  +++
Sbjct: 324 ERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRID 383

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA      M   G T NL  +N L+  LCK+    KA E+ + +    F+PD  TY+I++
Sbjct: 384 EAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIV 443

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC- 266
           +G  K+  L +A ++   M+  GC P ++TY  +++ LC+ GRVDEA  I K M S  C 
Sbjct: 444 DGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCT 503

Query: 267 -----------------------------RPTSFI--YSVLVHTYGVENRIEDAVDTFLE 295
                                        R T +I  Y+ L+  Y  E R+++  + F +
Sbjct: 504 ADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFED 563

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G + ++  YN ++   CK  K    +  L+ M+S G  P+  + NII++GL    +
Sbjct: 564 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 623

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA +V  +MI+     DA TY  ++  FC+    + A  + K M      P   T++ 
Sbjct: 624 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 683

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEG 458
           LI+GL     + D+  L+ +M+  G   S   T+  +   L KEG
Sbjct: 684 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 728



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 206/424 (48%), Gaps = 17/424 (4%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L+Q    + P +V  VL++ ++  T A  FF WA   + ++HS    +  +++L +    
Sbjct: 84  LEQWRGTLQPAVVSRVLQRLKDPQT-AIVFFVWA-GDRGFKHSTFTRNCFLQTLLE---- 137

Query: 114 QIMWDLVNAMRTKRMLNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
               D + AM  +RML+        T+ ++++   ++ ++++A    +  +  G    ++
Sbjct: 138 NGSSDRIPAM-FERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVS 196

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            +  L  A CK+  ++ A EIF   ++   PD+  Y+ ++ G  +  +   A E  +EM 
Sbjct: 197 VYTILTRAFCKTGRLKDALEIF---RNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMN 253

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           +    PD+ TY I++D LCKA + D+A  ++  M      P +  ++ ++       + E
Sbjct: 254 ERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFE 313

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
            A      M +         YN LI   CK         ++ +  S G  P+  T +I+ 
Sbjct: 314 RAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILA 373

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +GL  RG  DEA+ + + M  K C  +  TY  +I   C+  + EKA+++ + +    F+
Sbjct: 374 DGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFV 433

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P + T++++++GLC +G +  +  ++E M+++G  PS  T+  L + L + GR D    +
Sbjct: 434 PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHI 493

Query: 467 QEKM 470
            ++M
Sbjct: 494 FKEM 497



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 172/342 (50%), Gaps = 5/342 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y  +++ L K  +      +V  M  +    +V T+  +M    R  +V+EA + F 
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 495

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
            M     T +  A+  L++  CKS   ++AQ++ D +  R  P    Y+ L++G+ K+  
Sbjct: 496 EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI--RGTPYIDVYNALMDGYCKEGR 553

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L     +F +M   GC P+I TY I++D LCK G+VDEA   ++SM S  C P    Y++
Sbjct: 554 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 613

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++      ++ ++A     +M + GI  D   YN L+  FCK  +F +   +LK+M   G
Sbjct: 614 IIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG 673

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADA-DTYTMMIKMFCQGGELEKA 393
           V P++ T N +++GL       +AY +   M++  C   A  TY  +I   C+ G L++A
Sbjct: 674 VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQA 733

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
             +  +M       +  T+++ I+ LC +G + ++  LL +M
Sbjct: 734 LLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 775



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 184/407 (45%), Gaps = 39/407 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           AY S++    K  + +    +V+ +R    ++V  +  +M  Y +  +++E    F  M 
Sbjct: 508 AYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDV--YNALMDGYCKEGRLDEIPNVFEDMA 565

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
             G   N+  +N ++  LCK   V +A    + M     +PD  +Y+I+++G  K     
Sbjct: 566 CRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPK 625

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            AR++  +M+  G  PD VTY  ++   CK  R D+A+GI+K+M      P +  Y+ L+
Sbjct: 626 EARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 685

Query: 278 HTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                 NR+ DA +   EM +NG +++    YN +I   CK    K    ++  M   GV
Sbjct: 686 SGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 745

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-------------IKLCEAD---------- 373
             N+ T NI ++ L   G  DEA  +   M             I LC+A+          
Sbjct: 746 EANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAR 805

Query: 374 -----------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                      + T+ ++I  F +   L++A  +   M  +   PS+ T++++I  LC  
Sbjct: 806 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKL 865

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             V  +  L ++M  +GI  S  ++  L   L  +GR ++ L+ L+E
Sbjct: 866 DKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEE 912



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 168/358 (46%), Gaps = 18/358 (5%)

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNG 171
           Q+  D  ++    R L++ T     RK AR + +++ V     + + G  + + L  + G
Sbjct: 34  QVSTDGKSSGIPHRQLHLST----ARKLARSESLQQDVLDLLGLLQSGSNIRERLEQWRG 89

Query: 172 LLSA------LCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
            L        L + K+ + A   F    DR F   + T +  L+   ++ +  R   +F 
Sbjct: 90  TLQPAVVSRVLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFE 149

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M+D G  PD  TY +++  LC+  ++D+A  ++        +P   +Y++L   +    
Sbjct: 150 RMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTG 209

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R++DA++ F    +N    D   YNA+I   C+ N        LK+MN + VAP+  T N
Sbjct: 210 RLKDALEIF----RNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYN 265

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I+++GL    +TD+A  +   M+ +    D  T+  ++   C+ G+ E+A  +   M  +
Sbjct: 266 ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 325

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              PS  T++ LI+GLC +  V  +  L+++ +  G  P   T+  L   L K GR D
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRID 383



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 168/345 (48%), Gaps = 8/345 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +++ Y+ +++ L K  +    +  + +M +   + +V ++ II+    +  K +EA    
Sbjct: 572 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 631

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + M + G+  +   +N L++  CK +    A  I   M K    PD+ TY+ L+ G  + 
Sbjct: 632 DQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQT 691

Query: 214 PNLPRAREIFREMVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             L  A E+  EM+  GC      TY  ++D LCK G + +AL ++  M        +  
Sbjct: 692 NRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVT 751

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++ +     E R+++A     EM+    L D   Y  +I   CKA +     ++ ++M 
Sbjct: 752 YNIFIDRLCKEGRLDEASSLLSEMD---TLRDEVSYTTVIIGLCKAEQLDRASKLAREMV 808

Query: 333 S-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
           + KG+   S T N++++        DEA  +   M++  C     TY M+I   C+  ++
Sbjct: 809 AVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKV 868

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +KA++++  M ++  + S  +++VLI GLC +G   ++  +LE+M
Sbjct: 869 DKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 15/255 (5%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNV-ETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I  L++  +    ++L++ M R   +++   T+  I+ +  +   +++A+   + M
Sbjct: 681 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 740

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             +GV  N   +N  +  LCK   + +A  +   M    + D  +Y+ ++ G  K   L 
Sbjct: 741 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT--LRDEVSYTTVIIGLCKAEQLD 798

Query: 218 RAREIFREMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
           RA ++ REMV   G      T+ +++D   K  R+DEAL ++  M    C P+   Y+++
Sbjct: 799 RASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMV 858

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS--- 333
           +      ++++ A + F EM   GI+A    Y  LI   C   + K   +VL++M S   
Sbjct: 859 ITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 918

Query: 334 -------KGVAPNSR 341
                  + VAP+S+
Sbjct: 919 EIDDLKWEDVAPHSQ 933


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 201/390 (51%), Gaps = 7/390 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++ ++V  VL++ R+    A+ FF W  K+     S   Y+ +++ L ++R+++ +  ++
Sbjct: 1   MTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVL 60

Query: 121 NAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           + M  +   ++ +T+ +++ +YA    VEEA+  FN  ++ G+  +L +F  LL  LC+ 
Sbjct: 61  DEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRY 120

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           K+V  A+ +       F  D KT +I+L GW    N+  A+  +++++ + C PD+ TYG
Sbjct: 121 KHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYG 180

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +  L   G++  A+ + ++M    C+P   I + ++     + R+ +A+  F  M++ 
Sbjct: 181 TFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKER 240

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPNSRTCNIILNGLIGRGETD 357
           G + +VA YN+LI   CK  + + VY +L +M  K     P+  T N +L  L    + +
Sbjct: 241 GCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSL---KKPE 297

Query: 358 EAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E   V  RM I  C+ + DT  +++K+       EK    W+ M+         +++++I
Sbjct: 298 EVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMI 357

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           + L DKG V D+     +M  KG+ P   T
Sbjct: 358 HWLYDKGRVEDALRYFGEMENKGMVPEPRT 387



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 7/235 (2%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++D+L +  R +E   ++  M           Y VLV+ Y   + +E+A+  F +  
Sbjct: 40  YNEILDILGRMRRFEELTLVLDEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRR 99

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG--VAPNSRTCNIILNGLIGRGE 355
           + G+  D+  +  L+   C+   +K+V      ++SKG     + +T NI+LNG    G 
Sbjct: 100 ELGLELDLVSFQKLLMYLCR---YKHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGN 156

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA R ++ +I   C+ D  TY   IK     G+L  A K+++ M   +  P +   + 
Sbjct: 157 VREAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNC 216

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +I+ LC K  V ++  + E M E+G  P+  T+  L K + K GR E V + L E
Sbjct: 217 VIDALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHMCKIGRMEKVYELLDE 271



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF--R 364
           +YN ++    +  +F+ +  VL +M+ +    +  T  +++N   G    +EA   F  R
Sbjct: 39  VYNEILDILGRMRRFEELTLVLDEMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKR 98

Query: 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           R + L E D  ++  ++   C+   ++ A +   + K   F   + T ++++NG C  G 
Sbjct: 99  RELGL-ELDLVSFQKLLMYLCRYKHVDVA-ETLLHSKGHEFGVDIKTMNIVLNGWCVLGN 156

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V ++    +D+I    +P   T+G   K L  +G+      L E M
Sbjct: 157 VREAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKLYEAM 202


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 9/394 (2%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           IR     V DV E       LA  F  + EK   ++H   +Y S+I  LA+ R+++ +  
Sbjct: 46  IRERIPFVTDVKEVKDPCEALAL-FENYHEK--GFKHHYPSYSSLIYKLARSRRFEAVET 102

Query: 119 LVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           ++  +R + +   ET F  +++ Y +   VE+ +  F+ M  +   + L +FN LL+ L 
Sbjct: 103 ILGHLRNRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLV 162

Query: 178 KSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
                 KA EIF    +  F P+S +Y+I+++GW K     +A  +F EM++ G  P +V
Sbjct: 163 DCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVV 222

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY   + VLC+ G +D AL + K+M      P +  Y++L+  +    + ++A     +M
Sbjct: 223 TYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           E +G       Y  L+    K      +  +L +M  + + P+  T NI++N L   G+ 
Sbjct: 283 EFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKV 342

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +AY+V  +M +  C+ +A TY MMI  +C  G+ + A K+   M +    P + TF+ L
Sbjct: 343 GDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASL 402

Query: 416 INGLCDKGIVSDS--CVLLEDMIEKGIRPSGETF 447
           + GL  KG  +D   C +LE+M ++ +R   ET+
Sbjct: 403 VVGLL-KGENNDDYVCFVLEEMEKRQLRFDAETW 435



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 3/260 (1%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           KDP    A  +F    + G      +Y  ++  L ++ R +    I+  + +   R    
Sbjct: 60  KDP--CEALALFENYHEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNIRCNET 117

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           ++  L+  YG  + +E  ++ F +M        +  +N L+      ++F     + +  
Sbjct: 118 LFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQA 177

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
              G  PNS + NI++ G I +G  ++A  +F  M+ K  +    TY   + + C+ GE+
Sbjct: 178 YEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEM 237

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + A  ++K M  K   P+  T+++L+ G C  G   ++  L+ DM   G +     +G L
Sbjct: 238 DTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVL 297

Query: 451 RKLLIKEGREDVLKFLQEKM 470
              L K G  D ++ L  +M
Sbjct: 298 MTHLGKTGNIDEMESLLNEM 317


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 215/445 (48%), Gaps = 23/445 (5%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKI--MLSSPKVVLD-TALDQSGIRVS 62
           HS  ++ S       R +++  ST   D  +  +     LS+P +  + T+ D S +R  
Sbjct: 125 HSHQEIDSTSAGHNSRPSAAGASTSGYDGLRGGTDDGEPLSNPIISPNSTSFDHSTVR-- 182

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
                  L  + N    A  FF W + Q  + H+   Y+ MI+ L K  ++ ++W L+  
Sbjct: 183 -----QTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQR 237

Query: 123 MRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
           M+   +   N  TF  + ++YA    VEEA+  +   +++ + ++  +++ L+ ALC+ K
Sbjct: 238 MKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNL-RDETSYSNLIDALCEYK 296

Query: 181 NVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           +V +A+E+F  +K+     F  D K Y+I+L GW K     + RE + EM   G    + 
Sbjct: 297 HVIEAEELF--LKESKDLVFNDDVKIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKSLY 354

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y I +D+ CK+G+   A+ + K M     R     Y+ ++   G+   ++ ++  F EM
Sbjct: 355 SYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREM 414

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           ++ G   +V  YN +I   C+  + +  Y V   M  KG APN  T +    G I + + 
Sbjct: 415 KEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCFF-GCIEKPK- 472

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +  R F RMI        DTY M++K F + G L   F VWK M+ +   P    ++ L
Sbjct: 473 -QILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNAL 531

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGI 440
           I+ L  KG+V  +    E+M+ KG+
Sbjct: 532 IDALVQKGMVDLARKYEEEMLAKGL 556



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 33/245 (13%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V+ + II+R + ++   ++    +  M + GV ++L +++  +   CKS    +A +++
Sbjct: 317 DVKIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLY 376

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK + I  D   Y+ ++   G    +  +  +FREM + GC P++VTY  ++ +LC+ 
Sbjct: 377 KEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCEN 436

Query: 249 GRVDEALG-----------------------------IVKSMDSTV---CRPTSFIYSVL 276
           GR+ EA G                             I+++ D  +    RP    Y +L
Sbjct: 437 GRIREAYGVFDQMREKGYAPNVITYHCFFGCIEKPKQILRTFDRMINSGVRPRMDTYVML 496

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +G    +      + +ME+ G   D   YNALI A  +        +  ++M +KG+
Sbjct: 497 MKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAKGL 556

Query: 337 APNSR 341
           +   R
Sbjct: 557 SAKPR 561



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 15/251 (5%)

Query: 218 RAREIFREMVDTGC--NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIYS 274
           RA E F + V T C  N    TY  M+D+L K    D    +++ M +  V  P    + 
Sbjct: 194 RALEFF-DWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFR 252

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV----LKD 330
            +   Y   + +E+A++ +   E+   L D   Y+ LI A C+   +K+V       LK+
Sbjct: 253 FVFKRYAAAHLVEEAMNAYYRTEEFN-LRDETSYSNLIDALCE---YKHVIEAEELFLKE 308

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGG 388
                   + +  NIIL G    G   +    +  M +  +C++   +Y++ + + C+ G
Sbjct: 309 SKDLVFNDDVKIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKS-LYSYSIYMDIQCKSG 367

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +  +A K++K MK K     +  ++ +I  +     V  S  +  +M E G  P+  T+ 
Sbjct: 368 KPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYN 427

Query: 449 KLRKLLIKEGR 459
            + KLL + GR
Sbjct: 428 TIIKLLCENGR 438



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 127/276 (46%), Gaps = 6/276 (2%)

Query: 177 CKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNP 233
           C + + ++A E FD ++ +  F   + TY+ +++  GK         + + M  D    P
Sbjct: 187 CYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYP 246

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           + VT+  +      A  V+EA+      +    R  +  YS L+        + +A + F
Sbjct: 247 NHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNLRDET-SYSNLIDALCEYKHVIEAEELF 305

Query: 294 LEMEKNGILAD-VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           L+  K+ +  D V +YN ++  + K   +K      ++M+ +GV  +  + +I ++    
Sbjct: 306 LKESKDLVFNDDVKIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCK 365

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+   A ++++ M K     D   Y  +I+       ++ + +V++ MK     P++ T
Sbjct: 366 SGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVT 425

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           ++ +I  LC+ G + ++  + + M EKG  P+  T+
Sbjct: 426 YNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITY 461


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 189/386 (48%), Gaps = 20/386 (5%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++  I  L K+ +      LV+ M  +    N  T+ ++M    R+ KV+EA    N
Sbjct: 287 VNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLN 346

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-----PDSKTYSILLEGW 210
            +       N+  FN L++       + +A+ +   M +  +     PD  TY+ L+ G 
Sbjct: 347 KVPN----PNVVLFNTLINGYVSRGRLDEAKAV---MHESMLSVGCGPDIFTYNTLILGL 399

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  ARE+  EM   GC P+++TY I++D  CK GR++EA  ++  M        +
Sbjct: 400 CKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNA 459

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+     + +++DA++ F +M   G   D+  +N+LI   CK NKF+    + +D
Sbjct: 460 VGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 519

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  +GV  N+ T N +++  + RG   EA ++   M+ + C  D  TY  +IK  C+ G 
Sbjct: 520 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 579

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +EK   +++ M  K   P+  + ++LINGLC  G +  +   L DMI +G+ P   T+  
Sbjct: 580 IEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS 639

Query: 450 LRKLLIKEGREDVLKFLQEKMNLLVK 475
           L   L K GR       QE +NL  K
Sbjct: 640 LINGLCKTGRA------QEALNLFDK 659



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 211/496 (42%), Gaps = 51/496 (10%)

Query: 17  SFLRRYNSSE-PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRN 75
            F R YN +   +T  LD+     +++       L T+L     R++P  +  +LE   +
Sbjct: 35  GFNRFYNDTVFNNTNGLDSGTEWERLLKPFDLPELRTSL----TRITPYQLCKLLELPLD 90

Query: 76  AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-F 134
             T +   F+WA  Q+ Y H    Y+ +I+ L    +++ +  L+  M+ + ++  E+ F
Sbjct: 91  VPT-SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLF 149

Query: 135 CIIMRKYAR----------------VQKVEEAVYTFNV--------------------MQ 158
            +IM+ Y R                V   E    ++NV                    M 
Sbjct: 150 ILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEML 209

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G++  +  F  ++ ALC    V  A  +  D  +   +P++  Y  L+    K   + 
Sbjct: 210 SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVN 269

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              ++  EM+  GC PD+ T+   +  LCK  R+ EA  +V  M      P SF Y VL+
Sbjct: 270 EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLM 329

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD-MNSKGV 336
           H      ++++A    L    N    +V ++N LI  +    +      V+ + M S G 
Sbjct: 330 HGLCRMGKVDEA-RMLLNKVPN---PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGC 385

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T N ++ GL  +G    A  +   M IK CE +  TYT++I  FC+ G LE+A  
Sbjct: 386 GPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 445

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V   M  K    +   ++ LI+ LC    V D+  +  DM  KG +P   TF  L   L 
Sbjct: 446 VLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLC 505

Query: 456 KEGR-EDVLKFLQEKM 470
           K  + E+ L   Q+ +
Sbjct: 506 KVNKFEEALGLYQDML 521



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 134/274 (48%), Gaps = 2/274 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E +V  Y  +I+   K  + +   ++++ M  K + LN   +  ++    + +KV++A+ 
Sbjct: 421 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 480

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
            F  M   G   ++  FN L+  LCK     +A  ++ D + +  I ++ TY+ L+  + 
Sbjct: 481 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 540

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   +  A ++  +M+  GC  D +TY  ++  LC+AG +++ L + + M S    P + 
Sbjct: 541 RRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNI 600

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
             ++L++       I+ A++   +M   G+  D+  YN+LI   CK  + +    +   +
Sbjct: 601 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 660

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             +G+ P++ T N +++     G  D+A+ +  R
Sbjct: 661 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 694


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 192/407 (47%), Gaps = 39/407 (9%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           + I +S  +V+ +L +F++    A   F+WAE +  YEH+  AY  M++ L K++Q   M
Sbjct: 72  NAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMMVDILGKLKQVDKM 131

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
             L+  MR   ++ + T    MR+ A   + E+AV  F+ +  + + +N  + N LL  L
Sbjct: 132 RALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTL 191

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK------------------------ 212
           CK + V +A+ IF  +K    P++ T++I + GW K                        
Sbjct: 192 CKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVI 251

Query: 213 -----------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
                        N  +  E+  +M   GC P++VTY  ++  L K  + +EAL I + M
Sbjct: 252 SYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERM 311

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMYNALIGAFCKANK 320
            S  C+P +  Y+ L+HT G   ++ +AV  F +EM K G+  + + YN++I  FC  ++
Sbjct: 312 RSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQ 371

Query: 321 FKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--KLCEADADTY 377
            +    +L+++ NS    P+ +T   +L      G+ D        M+       D   Y
Sbjct: 372 EQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAY 431

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           T++I   C+  + E  + +++ M  K   P   T ++L++ +  K +
Sbjct: 432 TLLIHGLCRANKCEWGYNLFEEMVGKAITPRYKTCALLLDEIKQKNM 478



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 119/262 (45%), Gaps = 8/262 (3%)

Query: 221 EIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVD--EALGIVKSMDSTVC-RPTSFIYSVL 276
           E+F+ +V D  CN  I     +VDVL    + D   ALG+ +  +S +        Y ++
Sbjct: 60  EVFKSLVHDEACNA-IPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLGYEHAPEAYDMM 118

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V   G   ++ D +   +E  + G L  ++     +     A ++++  RV  D+ +  +
Sbjct: 119 VDILGKLKQV-DKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVRVFDDLGNFEL 177

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
             N+ + N++L+ L    + ++A  +F  +      +  T+ + I  +C+   +++A   
Sbjct: 178 EKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWT 237

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + MK     P + ++S +I   C +        LL+DM  +G  P+  T+  +   L K
Sbjct: 238 IQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTK 297

Query: 457 -EGREDVLKFLQEKMNLLVKEP 477
            E  E+ L+ + E+M  +  +P
Sbjct: 298 VEQFEEALQ-IAERMRSVGCKP 318


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 189/386 (48%), Gaps = 20/386 (5%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++  I  L K+ +      LV+ M  +    N  T+ ++M    R+ KV+EA    N
Sbjct: 305 VNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLN 364

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-----PDSKTYSILLEGW 210
            +       N+  FN L++       + +A+ +   M +  +     PD  TY+ L+ G 
Sbjct: 365 KVPN----PNVVLFNTLINGYVSRGRLDEAKAV---MHESMLSVGCGPDIFTYNTLILGL 417

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  ARE+  EM   GC P+++TY I++D  CK GR++EA  ++  M        +
Sbjct: 418 CKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNA 477

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+     + +++DA++ F +M   G   D+  +N+LI   CK NKF+    + +D
Sbjct: 478 VGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 537

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  +GV  N+ T N +++  + RG   EA ++   M+ + C  D  TY  +IK  C+ G 
Sbjct: 538 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 597

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +EK   +++ M  K   P+  + ++LINGLC  G +  +   L DMI +G+ P   T+  
Sbjct: 598 IEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS 657

Query: 450 LRKLLIKEGREDVLKFLQEKMNLLVK 475
           L   L K GR       QE +NL  K
Sbjct: 658 LINGLCKTGRA------QEALNLFDK 677



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 210/494 (42%), Gaps = 51/494 (10%)

Query: 19  LRRYNSSE-PSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           +R YN +   +T  LD+     +++       L T+L     R++P  +  +LE   +  
Sbjct: 55  IRFYNDTVFNNTNGLDSGTEWERLLKPFDLPELRTSL----TRITPYQLCKLLELPLDVP 110

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCI 136
           T +   F+WA  Q+ Y H    Y+ +I+ L    +++    L+  M+ + ++  E+ F +
Sbjct: 111 T-SMELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFIL 169

Query: 137 IMRKYAR----------------VQKVEEAVYTFNV--------------------MQKY 160
           IM+ Y R                V   E    ++NV                    M   
Sbjct: 170 IMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSK 229

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G++  +  F  ++ ALC    V  A  +  D  +   +P++  Y  L+    K   +   
Sbjct: 230 GISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEV 289

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            ++  EM+  GC PD+ T+   +  LCK  R+ EA  +V  M      P SF Y VL+H 
Sbjct: 290 LKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHG 349

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD-MNSKGVAP 338
                ++++A    L    N    +V ++N LI  +    +      V+ + M S G  P
Sbjct: 350 LCRMGKVDEA-RMLLNKVPN---PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 405

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N ++ GL  +G    A  +   M IK CE +  TYT++I  FC+ G LE+A  V 
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  K    +   ++ LI+ LC    V D+  +  DM  KG +P   TF  L   L K 
Sbjct: 466 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 525

Query: 458 GR-EDVLKFLQEKM 470
            + E+ L   Q+ +
Sbjct: 526 NKFEEALGLYQDML 539



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 134/274 (48%), Gaps = 2/274 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E +V  Y  +I+   K  + +   ++++ M  K + LN   +  ++    + +KV++A+ 
Sbjct: 439 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 498

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
            F  M   G   ++  FN L+  LCK     +A  ++ D + +  I ++ TY+ L+  + 
Sbjct: 499 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 558

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   +  A ++  +M+  GC  D +TY  ++  LC+AG +++ L + + M S    P + 
Sbjct: 559 RRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNI 618

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
             ++L++       I+ A++   +M   G+  D+  YN+LI   CK  + +    +   +
Sbjct: 619 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 678

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             +G+ P++ T N +++     G  D+A+ +  R
Sbjct: 679 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSR 712


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 219/440 (49%), Gaps = 16/440 (3%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           S    ++A    + + K  LS   VV   AL++SGI  + ++V  +L++F N   +A   
Sbjct: 100 SEASDSDAHKVGEILKKHYLSEDAVV--EALNESGISATHDLVSQLLKRFSNQWLIALGV 157

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYA 142
           F WA+ Q  Y H    Y+SMI+ L K R++ +MWDLV  M      +++ T   +M++  
Sbjct: 158 FIWAKNQTGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLNGYVSLVTMGKVMKRLV 217

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
           R  K  EA+  F  ++K+G++++  A N L+  L ++  V  A+ +    +     D ++
Sbjct: 218 RDGKYNEAIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEFEGCLTLDYRS 277

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+IL  G+ K      AR+   EM + G +P++V+Y   ++   +         I+  M 
Sbjct: 278 YNILSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQ 337

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
              C P    Y+V +   G   +I  A++   E+++NG +     Y +LI + C + + K
Sbjct: 338 EKGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLK 397

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMI 381
           + + + +D+  +GV  +      +++      + + A ++  +M +  C+ D  TY  ++
Sbjct: 398 DAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPLL 457

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMH----TFSVLINGLCDKGIVSDSCVLLEDMIE 437
           KM C+    +K+ K+ K++    F   +     T+ +L++GL  +G +  +C   ++ + 
Sbjct: 458 KMCCR----KKSMKMLKFLLNHMFENDVSIDIVTYDLLVHGLRKQGKLKYACFFFQEAVL 513

Query: 438 KGIRPSGETFGKLRKLLIKE 457
           KG+ P  +T+    K+L++E
Sbjct: 514 KGMVPCDKTY----KILLEE 529


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 197/430 (45%), Gaps = 46/430 (10%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEK---FRNA----GTLAFCFFKWAEKQQNYEHSVRAYHS 102
            D +   S   VS  IV  V+EK    R+      TLAF  F WA   + + HS   Y  
Sbjct: 94  FDFSQISSADSVSSAIVRRVIEKCGGVRHGIPFPQTLAF--FNWATNLEEFGHSPEPYME 151

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           MI+   K                                       EAV+ FN M+ YG 
Sbjct: 152 MIDLAGK----------------------------------AGLAAEAVHAFNRMEDYGC 177

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
             +  AF+ ++S+L K +   +AQ  FD +KDRF PD   Y+ L+ GW +  N+  A  +
Sbjct: 178 KPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERV 237

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F EM   G  P++ TY I++D LC++G++  A  +   M    C P +  ++ L+  +  
Sbjct: 238 FGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVK 297

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             R E  +  + +M++ G   D   YN LI + C+ +  +   ++L  +  KG   N+ +
Sbjct: 298 AGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSV-KKGCNLNASS 356

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N I   +   G+ + A+R+F +M  L C  +  TY ++++MF      +   K+ K M 
Sbjct: 357 FNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMD 416

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGRE 460
                P+ +T+ VLI+  C  G  +++    ++MI EK +RPS   +  + + L K G+ 
Sbjct: 417 ENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQL 476

Query: 461 DVLKFLQEKM 470
              + L EKM
Sbjct: 477 KKHEELVEKM 486



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 3/285 (1%)

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           + F    + Y  +++  GK      A   F  M D GC PD + + +++  L K  R  E
Sbjct: 140 EEFGHSPEPYMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIE 199

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A     S+      P   +Y+ LVH +     I +A   F EM+  GI  +V  Y+ +I 
Sbjct: 200 AQSFFDSLKDRF-EPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVID 258

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
           A C++ +    + V  +M   G  PN+ T N ++   +  G T++  +V+ +M +L C  
Sbjct: 259 ALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPP 318

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           DA TY  +I+  C+   LE+A K+   +K K    +  +F+ +   +   G V+ +  + 
Sbjct: 319 DAITYNFLIESHCRDDNLEEAVKILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHRMF 377

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             M +   RP+  T+  L ++   +   D++  L+++M+    EP
Sbjct: 378 AKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEP 422



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  TF  +MR + +  + E+ +  +N M++ G   +   +N L+ + C+  N+ +A +I 
Sbjct: 284 NAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL 343

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           + +K     ++ +++ +     K  ++  A  +F +M D  C P+ VTY I++ +     
Sbjct: 344 NSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKK 403

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMY 308
             D  L + K MD     P +  Y VL+ T+       +A   F EM E+  +   + +Y
Sbjct: 404 STDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVY 463

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKG 335
             ++    KA + K    +++ M ++G
Sbjct: 464 EMVLQQLRKAGQLKKHEELVEKMVNRG 490


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 229/490 (46%), Gaps = 35/490 (7%)

Query: 17  SFLRRYNSSEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFR 74
           +F  R ++  P+ +  + A  +S+I+L   +P   ++++L   GI ++P ++   L + R
Sbjct: 39  AFSPRNDTLLPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLR 98

Query: 75  NAGTLAFCFFKWA-------------------EKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           +   +A   F  +                       +   +   Y+ MI+ LAK+RQ+ +
Sbjct: 99  HNSKIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDV 158

Query: 116 MWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLL 173
            W L+  M  + +    ETF +++R+        +A+  F+ M+ +     N   F  LL
Sbjct: 159 CWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDDMESFVSEPVNETHFCFLL 218

Query: 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
             LCK   V+   EIF+  K RF P+ K Y++L+ GW K   +  A    +E  + G   
Sbjct: 219 DTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGERGIEA 278

Query: 234 DIVTYGIMVDVLCKAGRVDE----------ALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            +VTY ++++ +C+   +            A  +   M      P    +S+++H Y   
Sbjct: 279 TVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRA 338

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           ++ E  +D    M++ GI   V  Y +++   C   + ++   +L +M   GV+  + T 
Sbjct: 339 HKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTY 398

Query: 344 NIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           N      +GR + + A +++++M +  L      +Y ++++MF     L+   ++W+ +K
Sbjct: 399 NCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWEDLK 458

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                P + ++++LI+GLC+K    ++C    +MIEKG+ P   TF  L K LI+     
Sbjct: 459 SSGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGLLPQKVTFETLYKGLIQSDMLR 518

Query: 462 VLKFLQEKMN 471
             + L++K++
Sbjct: 519 TWRRLKKKLD 528



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/237 (18%), Positives = 109/237 (45%), Gaps = 3/237 (1%)

Query: 111 RQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           R   +  +L + MR + +  +V +F I++  Y+R  K E  +    +M++ G+  ++  +
Sbjct: 304 RTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTY 363

Query: 170 NGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             ++  LC    +  A+E+  + +++     + TY+   + +    +   A +++++M +
Sbjct: 364 TSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMRE 423

Query: 229 TGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
            G     + +Y I++ +     R+D    I + + S+   P    Y++L+H    + +  
Sbjct: 424 DGLGSLGLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWR 483

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +A   F+EM + G+L     +  L     +++  +   R+ K ++ + +   S   N
Sbjct: 484 EACKFFVEMIEKGLLPQKVTFETLYKGLIQSDMLRTWRRLKKKLDEESITFGSEFQN 540


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/561 (24%), Positives = 234/561 (41%), Gaps = 103/561 (18%)

Query: 3   KVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVS 62
           K YH  N  +   +S   R++S   ++ AL   K+I+ +            LD    R +
Sbjct: 5   KSYHRPN--LPELVSSKARFSSLSSTSHALLVDKAITLLKFHPHH------LDSLSSRFT 56

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
           P+     L K +   TL   F  WA     ++   +     I  L + + Y+    L   
Sbjct: 57  PQSASYFLLKSQFDQTLTLKFLTWARNHPFFDSHCKCLSLHI--LTRFKLYKTAQTLAQE 114

Query: 123 MR-----------------TKRMLNVET--FCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           +                  +  + N  +  F ++++ Y+ +  +++AV T N+ +  G  
Sbjct: 115 LALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFM 174

Query: 164 QNLAAFNGLLSALCKSKNVRK--AQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
             + ++N +L A+ +S+   K  A+E++ + ++ R  P+  TY+IL+ G+     L +  
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST---------------V 265
             F EM   GC P++VTY  ++D  CK GR+DEA G++KSM S                +
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294

Query: 266 CR--------------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CR                    P    Y+ L++ Y  E     A+    EM +NG+   V
Sbjct: 295 CREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSV 354

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y ALI + CKA            M  +G+ PN RT   +++G   +G  +EAYR+   
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414

Query: 366 MI------------------------------------KLCEADADTYTMMIKMFCQGGE 389
           M                                     K    D  +Y+ +I  FC+ GE
Sbjct: 415 MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 474

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           L++AF++ + M  K   P   T+S LI GLC+   ++++C L ++M++ G+ P   T+  
Sbjct: 475 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 534

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           L      EG  +    L ++M
Sbjct: 535 LINAYCVEGDLNKALHLHDEM 555



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 3/367 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ +I     + + Q        M R   + NV T+  ++  Y ++ +++EA    
Sbjct: 213 NVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLL 272

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G+  NL ++N +++ LC+  ++++A EI + M  + F PD  TY+ LL G+ K+
Sbjct: 273 KSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKE 332

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N  +A  I  EMV  G +P +VTY  +++ +CKA  ++ A+     M     RP    Y
Sbjct: 333 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 392

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +  +  + +A     EM ++G    V  YNA I   C   + +    V+++M  
Sbjct: 393 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 452

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG+AP+  + + I++G   +GE D A+++ + M+ K    DA TY+ +I+  C+   L +
Sbjct: 453 KGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTE 512

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  + + M      P   T++ LIN  C +G ++ +  L ++MI KG  P   T+  L  
Sbjct: 513 ACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 572

Query: 453 LLIKEGR 459
            L K+ R
Sbjct: 573 GLNKQAR 579



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 181/396 (45%), Gaps = 27/396 (6%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y ++I S+ K R      +  + MR + +  N  T+  ++  ++R   + EA    
Sbjct: 353 SVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRIL 412

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           N M + G + ++  +N  +   C  + + +A  +   M ++   PD  +YS ++ G+ + 
Sbjct: 413 NEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRK 472

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L RA ++ +EMV+ G +PD VTY  ++  LC+  R+ EA  + + M      P  F Y
Sbjct: 473 GELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTY 532

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y VE  +  A+    EM   G L D   Y+ LI    K  + +   R+L  +  
Sbjct: 533 TTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIY 592

Query: 334 KGVAPNSRT--------CNI-------ILNGLIGRGETDEAYRVFRRMIKLCEADADT-Y 377
           +   P+  T         NI       ++ G   +G   EA RVF  M++      +  Y
Sbjct: 593 EESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVY 652

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I   C+GG L KAF ++K M    F+P   T   LI  L  +G+  +    + ++I 
Sbjct: 653 NVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEE----MSEVIG 708

Query: 438 KGIRPSGETFGKLRKLLI----KEGR-EDVLKFLQE 468
             +R       +L K+L+    KEG  E VL  L +
Sbjct: 709 DTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTD 744



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 51/259 (19%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +++    ++++ EA      M   G+  +   +  L++A C   ++ KA  + D M
Sbjct: 496 TYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 555

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD-------- 243
             + F+PD+ TYS+L+ G  K      A+ +  +++     P  VTY  +++        
Sbjct: 556 IHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFK 615

Query: 244 -------VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
                    C  G + EA  + +SM     +P   +Y+V++H +     +  A + + EM
Sbjct: 616 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 675

Query: 297 EKNGILADVAMYNALIGAF-------------------CKANK----------------F 321
             +G +        LI A                    C+ N+                 
Sbjct: 676 IHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNM 735

Query: 322 KNVYRVLKDMNSKGVAPNS 340
           + V  VL DM   G+ PNS
Sbjct: 736 EAVLNVLTDMAKDGLLPNS 754


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 229/484 (47%), Gaps = 25/484 (5%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLD--TALDQSG 58
           ++ VYH   KM+S  +  L R+ S    TE+         +    P       + + + G
Sbjct: 61  VVSVYH---KMVSALV--LPRFTSLSALTESF--------VNTHHPSFAFSVLSLMTKRG 107

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVR---AYHSMIESLAKIRQYQI 115
             V+   +  VL+ F  +G        +++ ++NY+  V     Y++++    K ++   
Sbjct: 108 FGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAE 167

Query: 116 MWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
              L  AM+       N+ T+ +++  Y +  +V E +     M++ G+  ++  ++ L+
Sbjct: 168 ARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLI 227

Query: 174 SALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           SA C   ++   +E+FD M  R + P+  TYS L++G G+      A E+ ++M   G  
Sbjct: 228 SAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVR 287

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD+V Y ++ D LCK GR  +A+ ++  M      P +  Y+V+V+    E+R++DA   
Sbjct: 288 PDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGV 347

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPNSRTCNIILNGL 350
              M K G   D   YN L+   C A K      + K + S+   V P+  TCN ++ GL
Sbjct: 348 VEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGL 407

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G   +A R+   M+++  + +  TY  +I+ +    +L +A K+WKY     F P+ 
Sbjct: 408 CKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNS 467

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            T+SV+INGLC   ++S +  L   M + GIRP+   +  L   L +E   E      QE
Sbjct: 468 MTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQE 527

Query: 469 KMNL 472
             N+
Sbjct: 528 MRNV 531



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 189/411 (45%), Gaps = 43/411 (10%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKY 141
           F +  +       S  A  ++I++L K RQY  +  + + M +  +L    +   +   +
Sbjct: 28  FHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESF 87

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK---DRFIP 198
                   A    ++M K G   N+   N +L   C+S    KA  +F  MK   D  +P
Sbjct: 88  VNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVP 147

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGI 257
           D  TY+ L+ G+ K   L  AR +F  M   G C P++VTY +++D  CK+G V E LG+
Sbjct: 148 DCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGL 207

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M+    +   F+YS L+  +  E  IE   + F EM +  +  +V  Y+ L+    +
Sbjct: 208 LEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGR 267

Query: 318 ANKFKNVYRVLKDMNSKGVAP--------------NSR---------------------T 342
             +++    +LKDM ++GV P              N R                     T
Sbjct: 268 TGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLT 327

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N+++NGL      D+A+ V   M+K   + DA TY  ++K  C  G++ +A  +WK + 
Sbjct: 328 YNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLL 387

Query: 402 LKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            ++F   P + T + LI GLC +G V D+  +   M+E G++ +  T+  L
Sbjct: 388 SEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFL 438



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 173/390 (44%), Gaps = 11/390 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           +++  +  V  Y S+I +       +   +L + M R K   NV T+  +M+   R  + 
Sbjct: 212 EREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRW 271

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA      M   GV  ++ A+  L   LCK+     A ++ D M  +   P + TY+++
Sbjct: 272 REASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVV 331

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST-- 264
           + G  K+  +  A  +   MV  G  PD VTY  ++  LC AG++ EA+ + K + S   
Sbjct: 332 VNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKF 391

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P  F  + L+     E R+ DA      M + G+  ++  YN LI  +  A K    
Sbjct: 392 HVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEA 451

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM----IKLCEADADTYTMM 380
            ++ K     G +PNS T ++++NGL        A  +F +M    I+    D   Y  +
Sbjct: 452 LKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVID---YNAL 508

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +   C+   LE+A  +++ M+       + +F+++I+G    G V  +  LL +M    +
Sbjct: 509 MTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDL 568

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P   TF  L     K G  D    L EKM
Sbjct: 569 VPDAVTFSILINRFSKLGMLDEAMGLYEKM 598



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 153/336 (45%), Gaps = 5/336 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVE 148
           Q+  E     Y+ ++  L K  +    + +V  M  K +  +  T+  +++      K+ 
Sbjct: 318 QKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIH 377

Query: 149 EAVYTFNVM--QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSI 205
           EA+  + ++  +K+ V  ++   N L+  LCK   V  A  I   M +  +  +  TY+ 
Sbjct: 378 EAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNF 437

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+EG+     L  A ++++  V++G +P+ +TY +M++ LCK   +  A G+   M  + 
Sbjct: 438 LIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSG 497

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            RPT   Y+ L+ +   E+ +E A   F EM       DV  +N +I    KA   K+  
Sbjct: 498 IRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAK 557

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-DTYTMMIKMF 384
            +L +M    + P++ T +I++N     G  DEA  ++ +M+          +  ++K +
Sbjct: 558 ELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGY 617

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
              GE EK   +   M  K  +      S ++  LC
Sbjct: 618 GLKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 4/195 (2%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P+    S L+       + +  V  + +M    +L      +AL  +F   +     + V
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMF 384
           L  M  +G   N    N++L G    G+ D+A  +F +M +  +    D  TY  ++  F
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 385 CQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+   L +A  +++ MK      P++ T+SVLI+  C  G V +   LLE+M  +G++  
Sbjct: 160 CKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKAD 219

Query: 444 GETFGKLRKLLIKEG 458
              +  L      EG
Sbjct: 220 VFVYSSLISAFCGEG 234


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 217/455 (47%), Gaps = 10/455 (2%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           D A+ +  I+   P +  D A   S   V+PE+   VL++  +   +A+ FF+WA  +  
Sbjct: 15  DVAEILLGILKPGPYLCRDLAGYAS--TVTPEVAGRVLQQVEDP-DVAWTFFQWAGNKPG 71

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           ++H+      ++ +  K ++++    L+   +      N   +  ++  + +  +V++A 
Sbjct: 72  FQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAF 131

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211
              + M++ GV  ++   + L+  LC+   + +A E F  M +   P+  TY+ ++ G  
Sbjct: 132 ELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLC 191

Query: 212 KDPNLPRAREIFREM-----VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           K   +  A E+F +M        GC PD+++Y  ++D LCKA RVD+A    K M +  C
Sbjct: 192 KANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGC 251

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    YS L+      +R  + ++  L M++ G   ++  +NA++ A  K ++ +   +
Sbjct: 252 APNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQ 311

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
             + +   G  PN  T N+ ++GL   G  DEAYR+   M++     D  TY+ +I  FC
Sbjct: 312 FFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFC 371

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G ++KA  V+  M +   IP   TF  L++G  +     ++  + EDM+  G  P  +
Sbjct: 372 KAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQ 431

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
           T+  L   +      +    +  KM    ++P C+
Sbjct: 432 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCN 466



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 178/401 (44%), Gaps = 41/401 (10%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYAR 143
           K  E     E  V +Y ++I++L K ++    ++    MR      NV T+  ++    +
Sbjct: 208 KRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCK 267

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
           V +  E +     M++ G   N+  FN +L AL K+    KA + F+  +K    P+  T
Sbjct: 268 VDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVT 327

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y++ + G  K   +  A  I  EMV++   PD++TY  ++D  CKAGR+D+A  +   M 
Sbjct: 328 YNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 387

Query: 263 STVCRPTSFIYSVLVH----------------------------TYGV-------ENRIE 287
              C P    +  L+H                            TY V        + +E
Sbjct: 388 VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVE 447

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
            A++ + +M++     D   Y  LI   C+A +       L  M +  V PN   C+ ++
Sbjct: 448 SALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 507

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
             L  +GE DEA  V   ++++ C+   +T+ ++++      + E A K+   ++   F+
Sbjct: 508 EVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKL---LRSPGFV 564

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
               T+S+ +  +C  G   ++  ++E M+ KG+RP   T+
Sbjct: 565 ADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTY 605



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 143/330 (43%), Gaps = 6/330 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y S+I+   K  +     D+   M     + +  TF  ++  ++  +K  EA     
Sbjct: 360 VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHE 419

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            M   G    L  +N L+  +C + +V  A EI+  MK  +  PD  TY+ L++   +  
Sbjct: 420 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRAR 479

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A+E    M      P+      +V+VLCK G VDEA  ++ ++    C+P    + 
Sbjct: 480 RVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFK 539

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +LV    +  + E A      +   G +AD A Y+  +   CKA K      V++ M  K
Sbjct: 540 ILVEELYLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLK 596

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           GV P+  T   +L  L G    + A   F +M  + C     TYT++I   C     ++A
Sbjct: 597 GVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEA 656

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           F++++ M    F P   T   L + L D G
Sbjct: 657 FRIFEAMVAAGFTPQAQTMRTLSSCLRDAG 686



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 120/290 (41%), Gaps = 36/290 (12%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           H   E       +++  D+VNA     +  ++T+ ++M        VE A+  ++ M++ 
Sbjct: 403 HGFSEHKKSREAFRVHEDMVNA---GFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRK 459

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRA 219
               +   +  L+  LC+++ V +A+E  D M+ D  +P+      L+E   K   +  A
Sbjct: 460 KRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEA 519

Query: 220 REIFREMVDTGCNP--------------------------------DIVTYGIMVDVLCK 247
             +   +V+ GC P                                D  TY + V  +CK
Sbjct: 520 CSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICK 579

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AG+ DEA+ +++ M     RP    Y  ++ +    +R+E A+  F +M   G    +  
Sbjct: 580 AGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVT 639

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           Y  LIG  C A+     +R+ + M + G  P ++T   + + L   G  D
Sbjct: 640 YTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQD 689


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 208/442 (47%), Gaps = 35/442 (7%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L++   +++P +V DV+   ++   LA CFF WA +Q  Y H+V  Y  MI+ LA  ++ 
Sbjct: 140 LERLKFKLNPGLVCDVVVNQKDL-HLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQET 198

Query: 114 QIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
             +  ++ AM +    +++     ++R +     V  A+  FN M+ +G   +   +N +
Sbjct: 199 DAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFV 258

Query: 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           L  L K      A  +F  +   R  PD++T+ I +  + +   L  A E  +EM+ +G 
Sbjct: 259 LELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGI 318

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P + T+ +++D L K+G +DEA      M +  C P    Y+ LV+      R+E+A +
Sbjct: 319 DPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACE 378

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F+EM++N    D   YN LI    KA +      + K+M  +G+ PN RT NI+++ L 
Sbjct: 379 VFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLG 438

Query: 352 GRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLK------- 403
             G   EA+++F  + +     D  TY  +I +  +GG+++K   + K M  K       
Sbjct: 439 KAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIIS 498

Query: 404 ---------------RFI--PSMH-------TFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
                          R +  PS+        T++ L++     G V ++  LLE M +  
Sbjct: 499 RDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE 558

Query: 440 IRPSGETFGKLRKLLIKEGRED 461
             P+  T+  L   L K GR D
Sbjct: 559 CIPTVVTYTTLVDGLGKAGRLD 580



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 196/385 (50%), Gaps = 5/385 (1%)

Query: 89   KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
            K++  E  +  Y +++ SL K  +      + N ++   ++ +   + I++    +  +V
Sbjct: 660  KEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRV 719

Query: 148  EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
            +EA    + M+   +  +L  +  LL  L KS  + +A  +F  M +    PD   Y+ L
Sbjct: 720  DEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSL 779

Query: 207  LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
            ++  GK   L  A  IFR M    C PD+VTY  ++D L K GRV+EA    ++  S  C
Sbjct: 780  MDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGC 839

Query: 267  RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
             P   +YS L+ ++G +  ++ A++ F EM++     ++  YN L+    KA +     +
Sbjct: 840  TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899

Query: 327  VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
            +L++M   G  P+  T NI+++G+   G  DEA   F+RM  K    D  T+T +I+   
Sbjct: 900  LLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLG 959

Query: 386  QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
            +  +L +A +++  M+ + + PS+ T++VLI+ L   G V ++ ++  +M  KG  P G 
Sbjct: 960  KVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGI 1019

Query: 446  TFGKLRKLLIKEGREDVLKFLQEKM 470
            T G ++++L    RE     L+E +
Sbjct: 1020 TIGIMKRIL--SVREQQFHALEEGL 1042



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 184/366 (50%), Gaps = 3/366 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV-ETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y  +I  L K        D+   M+ + M  +   +  ++    + +K++ A+  FN
Sbjct: 633 VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            +Q+  +  +   +N +++ L KS  V +A ++ D MK++  +PD  TY+ LL+G GK  
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG 752

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +F +M + G  PD+V Y  ++DVL K G++  AL I ++M    C P    YS
Sbjct: 753 RLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYS 812

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+ + G E R+E+A   F      G   +V +Y++LI +F K         + ++M  +
Sbjct: 813 SLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRR 872

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
              PN  T N +L+GL   G  + A ++   M K+ C  D  TY ++I    + G +++A
Sbjct: 873 QCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEA 932

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
              +K MK K  +P + TF+ LI  L     + ++C L + M E+G  PS  T+  L  +
Sbjct: 933 ESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDI 992

Query: 454 LIKEGR 459
           L + G+
Sbjct: 993 LGRAGK 998



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 184/358 (51%), Gaps = 3/358 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++++ L K  +      L+  M  +    +V T+  +M  + +  + EE++  F
Sbjct: 562 TVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLF 621

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M + G   +++ ++ +++ LCKS +V +A ++F  MK+  + P    Y  LL    KD
Sbjct: 622 DEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKD 681

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A +IF E+ ++   PD   Y IMV+ L K+ RVDEA  +V SM +    P  F Y
Sbjct: 682 EKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTY 741

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+   G   R+E+A + F +M + G   DV  Y +L+    K  K  +   + + M  
Sbjct: 742 TSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAK 801

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           K   P+  T + +++ L   G  +EAY  F   I K C  +   Y+ +I  F + G +++
Sbjct: 802 KRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDR 861

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A ++++ M+ ++  P++ T++ L++GL   G ++ +  LLE+M + G  P   T+  L
Sbjct: 862 ALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNIL 919



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 45/373 (12%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           YHS +    K+ Q++I  D             +TF I +  + R  +++ A      M K
Sbjct: 268 YHSAVIVFGKLGQFRIQPD------------AQTFRIFVHSFNRSGRLDPAAEPIQEMIK 315

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR 218
            G+   +  F  L+ AL KS N+ +A + F+ MK+ R  P+  TY+ L+ G  K   L  
Sbjct: 316 SGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEE 375

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A E+F EM +  C+PD + Y  ++D L KAG  D A G+ K M      P    Y++++ 
Sbjct: 376 ACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMIS 435

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG--- 335
             G   R  +A   F ++++ G + DV  YN LI    K  +   V  ++K+M  KG   
Sbjct: 436 VLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGEC 495

Query: 336 -VAPNSR---------------------------TCNIILNGLIGRGETDEAYRVFRRMI 367
            ++ +S                            T N +++  I  G  DEA ++   M 
Sbjct: 496 IISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMK 555

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K  C     TYT ++    + G L++A  + + M+ +   PS+ T+S L+     +    
Sbjct: 556 KHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEE 615

Query: 427 DSCVLLEDMIEKG 439
           +S  L ++M+ KG
Sbjct: 616 ESLSLFDEMVRKG 628



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 169/341 (49%), Gaps = 2/341 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +M  +     V+EAV    VM+K+     +  +  L+  L K+  + +A  +   M
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           + +   P   TYS L+  + K      +  +F EMV  GC  D+ TY ++++ LCK+  V
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+AL +   M      P    Y  L+ +   + +I+ A+  F E++++ ++ D  +YN +
Sbjct: 650 DQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIM 709

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           +    K+N+     +++  M ++ + P+  T   +L+GL   G  +EA+ +F +M +   
Sbjct: 710 VNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D   YT ++ +  +GG+L  A  +++ M  KR +P + T+S LI+ L  +G V ++  
Sbjct: 770 EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYY 829

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             E+ I KG  P+   +  L     K+G  D    L E+M 
Sbjct: 830 FFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQ 870



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 187/449 (41%), Gaps = 75/449 (16%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTF 154
            V  +  +I++L K           N M+  R   NV T+  ++   A+  ++EEA   F
Sbjct: 321 GVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF 380

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL------ 207
             M++   + +  A+N L+  L K+     A  +F  MKDR  +P+ +TY+I++      
Sbjct: 381 VEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKA 440

Query: 208 ----EGW-------------------------GKDPNLPRAREIFREMVDTGCN------ 232
               E W                         GK   + +   I +EMV+ G        
Sbjct: 441 GRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRD 500

Query: 233 ------------------PDI-------VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
                             P +       +TY  ++      G VDEA+ +++ M    C 
Sbjct: 501 SNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECI 560

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           PT   Y+ LV   G   R+++AV    EMEK G    V  Y++L+ +F K ++ +    +
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
             +M  KG   +  T ++++N L    + D+A  VF RM +   E     Y  ++    +
Sbjct: 621 FDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             +++ A +++  ++    +P    +++++NGL     V ++C L++ M  + I P   T
Sbjct: 681 DEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT 740

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           +  L   L K GR      L+E  N+  K
Sbjct: 741 YTSLLDGLGKSGR------LEEAFNMFTK 763



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 2/178 (1%)

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           +++G    V  Y  +I     A +   V ++L  M  +G   +      +L         
Sbjct: 174 QQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNV 233

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             A  +F +M    C    + Y  ++++  +GG    A  V+  +   R  P   TF + 
Sbjct: 234 SGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIF 293

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
           ++     G +  +   +++MI+ GI P   TF  L   L+K G  ++  KF     NL
Sbjct: 294 VHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL 351


>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
 gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
          Length = 528

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 14/372 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           AY +++++LA+ RQ+   W +V         +  +F ++ R+Y       +AV  F+ M+
Sbjct: 122 AYDAVVDALARARQFDAAWRVVVDASADGAASPRSFAVLARRYVAAGMTRQAVRAFDDME 181

Query: 159 KY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            + G   N A F  LL  LCK K  + A EIF+  K ++ P+ K Y+IL+ GW K     
Sbjct: 182 AFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRKYKYNPNEKMYTILIYGWCKVNRND 241

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR----------VDEALGIVKSMDSTVCR 267
            AR+  ++M+D G  P+IVTY I+++ +C+             V  A  ++K M      
Sbjct: 242 MARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHSAEDVLKEMRDRGIE 301

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS+++H Y   ++ E  V  F  M+  GI   VA Y ++I       + ++   +
Sbjct: 302 PDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAETL 361

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMF 384
           L +M ++GV P+  T N       GR +   A +++ +M +   L   D  TY +++ MF
Sbjct: 362 LDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPGSLTAPDIHTYNILLGMF 421

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
            +         +W  M      P + ++++LI+G C      ++C    +MIEKG  P  
Sbjct: 422 IKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQKWREACQFFMEMIEKGFLPQK 481

Query: 445 ETFGKLRKLLIK 456
            TF  L + LI+
Sbjct: 482 ITFETLYRGLIQ 493



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 4/223 (1%)

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           D++  MR + +  +V ++ II+  Y+R  K E  V  F  M+  G+   +A +  ++  L
Sbjct: 290 DVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTSVIKCL 349

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNP 233
                +  A+ + D M  +   P   TY+   + +    ++  A +++ +M   G    P
Sbjct: 350 ASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPGSLTAP 409

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI TY I++ +  K  R      I   M  +   P    Y++L+H +    +  +A   F
Sbjct: 410 DIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGPDLDSYTLLIHGFCASQKWREACQFF 469

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +EM + G L     +  L     +A+  +   R+ + ++ +  
Sbjct: 470 MEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEAA 512


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 191/392 (48%), Gaps = 4/392 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           + +S  +V  +L +FR+    A    KWAE  + ++HS  AY   ++ L K +++  M +
Sbjct: 147 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 206

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
            V  MR  +++ + T   IMR++A   + EEAV  F+ + ++G+ +N  + N LL  LCK
Sbjct: 207 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 266

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
            K V +A+ +   +K    P++ T++I + GW K   +  A    +EM   G  P +++Y
Sbjct: 267 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 326

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++   C+     +   ++  M++    P S  Y+ ++ +   +   E+A+     M++
Sbjct: 327 TTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKR 386

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +G   D   YN LI    +A + +   RV + +M   GV+ N+ T N ++       E D
Sbjct: 387 SGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEED 446

Query: 358 EAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSV 414
           +A  + + M    LC  D  TY  +++   + G++ +  K+ K M  K  +     T++ 
Sbjct: 447 KAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTF 506

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           LI  LC   +   +  L E+MI + I P   T
Sbjct: 507 LIQRLCRANMCEWAYCLFEEMISQDITPRHRT 538


>gi|449491189|ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Cucumis sativus]
          Length = 450

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 203/408 (49%), Gaps = 14/408 (3%)

Query: 45  SPKVVLDTALDQSGIRVS-----PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA 99
           SP    D   + S  R +     P  V + L+ + N    ++ FF W E +  ++H+   
Sbjct: 24  SPIPEFDFKFNTSERRPTHTNFDPFTVREALDSYCNDWKRSYEFFNWVESECKFDHTTET 83

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+ M++ L K  ++ + W L+N MR     + +  TF I+ ++YA    V EA+  +  +
Sbjct: 84  YNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERL 143

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT--YSILLEGWGKDPN 215
           +++ + ++  +F  L+ ALC+S++V +AQE+      +   DS T  ++++L GW K   
Sbjct: 144 REFKL-RDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGW 202

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
             + R+ + EM   G   D+ +Y I +D+ CK+G+  +A+ + K M     +     Y+ 
Sbjct: 203 WSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNT 262

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H  G+   ++ A   F EM++ G   +V   N +I  FC+  +FK+ + +L  M  + 
Sbjct: 263 VIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRD 322

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             PN  T +     L    +  E   +F RMIK       DTY M+++ F + G L   F
Sbjct: 323 CQPNVITYHCFFRSL---EKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVF 379

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            VW  M+     P+   ++ LI+ L +KG++  +    E+M+ KG+ P
Sbjct: 380 LVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 427



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 33/239 (13%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +I+R + ++    +    +  M K GV ++L +++  +   CKS    KA +++  MK +
Sbjct: 192 LILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKK 251

Query: 196 FIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            +  D   Y+ ++   G    +  A  +F EM + GC P++VT   ++ + C+ GR  +A
Sbjct: 252 GMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDA 311

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHT----------------YGVENRIEDAV-------- 290
             ++  M    C+P    Y     +                YGV  +++  V        
Sbjct: 312 HMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGR 371

Query: 291 -----DTFL---EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                  FL   +ME+ G   +   YNALI A  +        +  ++M +KG++P  R
Sbjct: 372 WGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR 430


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 191/392 (48%), Gaps = 4/392 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           + +S  +V  +L +FR+    A    KWAE  + ++HS  AY   ++ L K +++  M +
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
            V  MR  +++ + T   IMR++A   + EEAV  F+ + ++G+ +N  + N LL  LCK
Sbjct: 143 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
            K V +A+ +   +K    P++ T++I + GW K   +  A    +EM   G  P +++Y
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++   C+     +   ++  M++    P S  Y+ ++ +   +   E+A+     M++
Sbjct: 263 TTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKR 322

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +G   D   YN LI    +A + +   RV + +M   GV+ N+ T N ++       E D
Sbjct: 323 SGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEED 382

Query: 358 EAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSV 414
           +A  + + M    LC  D  TY  +++   + G++ +  K+ K M  K  +     T++ 
Sbjct: 383 KAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTF 442

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           LI  LC   +   +  L E+MI + I P   T
Sbjct: 443 LIQRLCRANMCEWAYCLFEEMISQDITPRHRT 474


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 172/318 (54%), Gaps = 8/318 (2%)

Query: 160 YGVT--QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           +GVT   NL  +  ++ +LCK   + K +E+F  MK R I PD   YS ++ G       
Sbjct: 230 FGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRW 289

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +F EMVD G +P++VT+ +++D LCKAG+++EA  ++K M      P +F Y+ L
Sbjct: 290 EGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTL 349

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  + +E RI+DA D F+ ME  GI  D   YN LI  +CK+ +     ++ ++M  K +
Sbjct: 350 IDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEI 409

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            P   T N +L GL   G+  +A+ +F  M +     ++ TY +++   C+   L +A +
Sbjct: 410 MPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAME 469

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++ Y++   F PS+  F+ LI+GLC    +  +  L   +  +G+ P+  T+  +   L 
Sbjct: 470 LFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLC 529

Query: 456 KEGR----EDVLKFLQEK 469
           K G+    +D+   ++EK
Sbjct: 530 KSGQLENAKDLFLGMEEK 547



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 139/280 (49%), Gaps = 6/280 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I+      +     DL  +M +K +  +  ++ +++  Y +  ++ EA   +  M
Sbjct: 345 TYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREM 404

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
               +   +  +N LL+ L +   VR A  +F  MK     P+S TY+ILL+G  K+ +L
Sbjct: 405 MCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHL 464

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+F  + +    P I  +  ++D LCKA +++ A  +   +      P    Y+V+
Sbjct: 465 SEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVM 524

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H      ++E+A D FL ME+ G   ++  +N L+  FC+ ++ + V  +L++M  K  
Sbjct: 525 IHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDF 584

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376
           +P++ T +I+++ L      DE YR +  ++    A   T
Sbjct: 585 SPDASTISIVVDLL----SKDEKYREYLHLLPTFPAQGQT 620



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 41/336 (12%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           + +F  ++   A++++  + +  +  M   G+  +    N L++  C    V     +  
Sbjct: 92  ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLG 151

Query: 191 CMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M  R   P++ T++ L++G      +  A  + R+MV  G  P++VTYG +++ LC  G
Sbjct: 152 EMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTG 211

Query: 250 RVDEALGIVKSMDS------TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
               A+ + + M +         +P    Y  ++ +   +  I+   + FLEM+  GI  
Sbjct: 212 NTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISP 271

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           DV  Y+++I   C   +++    +  +M  +GV PN  T N++++ L             
Sbjct: 272 DVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDAL------------- 318

Query: 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
                                C+ G++E+A  + K M  +   P   T++ LI+G C +G
Sbjct: 319 ---------------------CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEG 357

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            + D+  L   M  KGI     ++  L     K GR
Sbjct: 358 RIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR 393



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%), Gaps = 9/271 (3%)

Query: 198 PDSKTYSILLEGWGKDPNLPR--AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           PD       L+   K  ++ R  A  +F  ++D    P I ++  ++  + K  R  + +
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + K M      P     ++L++ Y   N+++  +    EM + G   +   + +L+   
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGL 172

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------- 368
           C  ++      +L+ M   G  PN  T   +LNGL   G T  A ++   M+        
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGV 232

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             + +   Y  +I   C+ G ++K  +++  MK +   P +  +S +I+G+C  G    +
Sbjct: 233 TIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGA 292

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             L  +M+++G+ P+  TF  L   L K G+
Sbjct: 293 KGLFNEMVDEGVHPNVVTFNVLIDALCKAGK 323


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 205/453 (45%), Gaps = 23/453 (5%)

Query: 27  PSTEALDAAKSISKIMLSS-----PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
           P      AA  +++++LS      P       L   G+ +S  ++  +L + R A  LA 
Sbjct: 35  PPVVPSPAADELARLLLSHHNPFHPAESTLQLLSGGGVSLSQSLLVQILLRLRGASKLAL 94

Query: 82  CFFKWAEKQQNYEH----SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137
                A    +       +  AY +++++L +  Q+   W LV            TF ++
Sbjct: 95  SLLNSARLHPSPSVSSPPNADAYDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVL 154

Query: 138 MRKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
            R+Y       +AV  F+ M+ + G   +   F  LL  LCK K  + A E+F+  K ++
Sbjct: 155 ARRYVAAGMTRQAVRAFDDMEAFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRKYKY 214

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------ 250
            P+ K Y+IL+ GW K      +++  ++M+D G  P++VTY I+++ +C+         
Sbjct: 215 EPNEKMYTILIYGWCKVNRNDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNR 274

Query: 251 ----VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
               V  A  ++K M      P    YS+++H Y   ++ E  +  F  M+  GI   VA
Sbjct: 275 FDRTVRAAEDLLKEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVA 334

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y ++I       + ++  R+L +M S+GV P+  T N       GR +   A  ++++M
Sbjct: 335 TYTSVIKCLASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKM 394

Query: 367 ---IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
                    D  +Y +++ MF +  +     ++W  M      P + ++++LI+G C+  
Sbjct: 395 KAPASPTAPDIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENE 454

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              ++C    +MIEKG  P   TF  L + LI+
Sbjct: 455 KWREACQFFMEMIEKGFLPQKITFEILYRGLIQ 487



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 4/223 (1%)

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           DL+  MR + +  +V ++ I++  Y+R  K E  +  F  M+  G+   +A +  ++  L
Sbjct: 284 DLLKEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCL 343

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM--VDTGCNP 233
                +  A+ +   M    + P   TY+   + +    ++  A E++++M    +   P
Sbjct: 344 ASCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASPTAP 403

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI +Y I++ +  K  +      +   M  +   P    Y++L+H +    +  +A   F
Sbjct: 404 DIHSYHILLGMFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREACQFF 463

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +EM + G L     +  L     +A+  +   R+ K ++ +  
Sbjct: 464 MEMIEKGFLPQKITFEILYRGLIQADMLRTWRRLKKRVDEEAA 506


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 191/392 (48%), Gaps = 4/392 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           + +S  +V  +L +FR+    A    KWAE  + ++HS  AY   ++ L K +++  M +
Sbjct: 83  VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
            V  MR  +++ + T   IMR++A   + EEAV  F+ + ++G+ +N  + N LL  LCK
Sbjct: 143 FVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
            K V +A+ +   +K    P++ T++I + GW K   +  A    +EM   G  P +++Y
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++   C+     +   ++  M++    P S  Y+ ++ +   +   E+A+     M++
Sbjct: 263 TTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKR 322

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +G   D   YN LI    +A + +   RV + +M   GV+ N+ T N ++       E D
Sbjct: 323 SGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEED 382

Query: 358 EAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSV 414
           +A  + + M    LC  D  TY  +++   + G++ +  K+ K M  K  +     T++ 
Sbjct: 383 KAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTF 442

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           LI  LC   +   +  L E+MI + I P   T
Sbjct: 443 LIQRLCRANMCEWAYCLFEEMISQDITPRHRT 474


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 215/434 (49%), Gaps = 13/434 (2%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHS 102
           S   V    LD +G R S  + + ++  + ++G +  A   F+   +  N++        
Sbjct: 135 SAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLV-RNSNFQIPFHGCGY 193

Query: 103 MIESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +++ +        +W   +  +       V+ + I++ K+ +   + +A   FN ++K G
Sbjct: 194 LLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRG 253

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAR 220
           +     +FN L++ LCKS+N+ +   +   M+ +R  PD  TYS+L+ G  K+  L  A 
Sbjct: 254 LRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAE 313

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++F EM   G  P+ +T+  ++D  C++ R+D A+     M +   +P   +Y+ L++  
Sbjct: 314 QLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 281 ---GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
              G  N+    VD   EM   G+  D   Y  LI  +CK    ++   + K MN +GV 
Sbjct: 374 CKVGDVNKARKLVD---EMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVV 430

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
            ++     +++G    G   +A R  R M++   + D  TYTM+I  +C+ G ++  FK+
Sbjct: 431 LDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKL 490

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            K M++    P + T++VL+NGLC +G + ++ +LLE M+  G+ P   T+  L +   K
Sbjct: 491 LKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCK 550

Query: 457 EGR-EDVLKFLQEK 469
            G+ ED+LK   EK
Sbjct: 551 NGKAEDLLKLRNEK 564



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 157/324 (48%), Gaps = 3/324 (0%)

Query: 150 AVYTF-NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            ++TF + + +YG    +  +N L++  CK  ++R A+ IF+ ++ R + P + +++ L+
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K  NL     + + M +    PD+ TY +++  LCK GR+D A  +   M     R
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    ++ L+       RI+ A++T+ +M   G+  D+ MYN L+   CK        ++
Sbjct: 326 PNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQ 386
           + +M   G+ P+  T   +++G    G+ + A  + + M +     D   +T +I  FC+
Sbjct: 386 VDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCR 445

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +  A +  + M      P   T++++I+G C KG V     LL++M   G +P   T
Sbjct: 446 DGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVIT 505

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  L   L K+G+      L E M
Sbjct: 506 YNVLMNGLCKQGQMKNANMLLEAM 529



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L++ +  E  I DA   F E+ K G+      +N LI   CK+      +R+
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M    + P+  T +++++GL   G  D A ++F  M +     +  T+T +I   C+
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCR 340

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              ++ A   +  M      P +  ++ L+NGLC  G V+ +  L+++M   G++P   T
Sbjct: 341 SRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKIT 400

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMN 471
           +  L     KEG  +    +++ MN
Sbjct: 401 YTTLIDGYCKEGDLESAMEIRKGMN 425



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 1/186 (0%)

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           + E+ + G    V  YN LI  FCK    ++   +  ++  +G+ P + + N ++NGL  
Sbjct: 211 YSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCK 270

Query: 353 RGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
               DE +R+ + M +     D  TY+++I   C+ G L+ A +++  M+ +   P+  T
Sbjct: 271 SRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGIT 330

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           F+ LI+G C    +  +      M+  G++P    +  L   L K G  +  + L ++M 
Sbjct: 331 FTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMR 390

Query: 472 LLVKEP 477
           ++  +P
Sbjct: 391 MVGMKP 396


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 251/485 (51%), Gaps = 20/485 (4%)

Query: 5   YHSRNKMISGCISFLRRYNSSE---PSTEALDAAKSISKIMLSSP-KVVLDTALDQSGIR 60
           +H  N  +S  +SFL     S+   P  E  D A+++ +++  S  +V L  +L  SGI 
Sbjct: 11  HHVSNFRLS--VSFLHSVALSDAKVPVEEEGDDAETVFRMINGSNLQVELKESLSSSGIH 68

Query: 61  VSPEIVEDVLEKFRNAG---TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           +S ++++ VL++ R +         F+++A   + + HS  +  +M+  L + R++  +W
Sbjct: 69  LSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 128

Query: 118 DLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAFNGL 172
           +L+  + TKR    +++  T  +++ + A++  V + V +F   ++      + A FN L
Sbjct: 129 ELL--IETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNAL 186

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           L  LC+ K++  A+ ++  +K +F PD +T++ILL GW        A   F EM   G  
Sbjct: 187 LRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKS---SEEAEAFFEEMKGKGLK 243

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD+VTY  ++DV CK   +++A  ++  M      P    Y+ ++   G+  + + A + 
Sbjct: 244 PDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREV 303

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM++ G   DVA YNA I  FC A +  +  +++ +M  KG++PN+ T N+    L  
Sbjct: 304 LKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSL 363

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
             +   ++ ++ RM+   C  +  +   +IKMF +  +++ A ++W+ M +K F      
Sbjct: 364 ANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSLV 423

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             VL++ LCD   V ++   L +M+EKG RPS  +F +++ L+    + D +  L +KM 
Sbjct: 424 SDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNLIQKMA 483

Query: 472 LLVKE 476
           +   E
Sbjct: 484 IFSTE 488


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 224/461 (48%), Gaps = 16/461 (3%)

Query: 20  RRYNSSEPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIRVSPEIVED----VLEKFR 74
           RRY  S P+ E  D     S + +   K   +   L++S   VS ++  D    VL + R
Sbjct: 15  RRYRVSAPTFEHEDTRHVESLLAILEDKASDVQALLERSHAAVSTKLSRDTFGGVLGRLR 74

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134
                A  F+ WA  +  + H++   +S++  LA +R   +   L     +    NV +F
Sbjct: 75  CTCN-ALGFYHWAATRPGFSHTLFTRNSLL--LALVRGGHLSDALGFFQSSISEPNVSSF 131

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK- 193
            I++R +A     E        M+  G+T N A    +LSALC  +++ KA   F+ +  
Sbjct: 132 NILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSP 191

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           ++  P   TY++L++G  K   + RA ++F EM+  G  PDI+ Y  ++D L KAGRVDE
Sbjct: 192 NKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDE 251

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  +V  M +    PT+  Y+ +V       RI++AV T  EM +  +   V  Y+ ++ 
Sbjct: 252 ARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVT 311

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEA 372
            +    K +  + V+++M  +  AP++ +  + +  L   G  +EA +VF  M+ K C+ 
Sbjct: 312 GYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKP 371

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  TY ++I  FC+ G +  A  V + M      P+ + ++++++G      + ++  L 
Sbjct: 372 DMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELY 431

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           + +++ GI PS  T+  +   L K      LK + E + LL
Sbjct: 432 QRILKDGILPSTVTYNTVINALCK------LKKMDEALELL 466



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVE 148
           ++ Y+  + AY S+I+ L+K  +      LV+ M  +        +  I+    +  +++
Sbjct: 226 RKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQ 285

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           EAV T   M++  +   +  ++ +++       V KA  + + M DR   PD+ +Y++ +
Sbjct: 286 EAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFI 345

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           E          A ++F  MV+ GC PD+ TYGI++D  CK G +  A  +++ MD    +
Sbjct: 346 EALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVK 405

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  +IY++++  +   +R+E+A++ +  + K+GIL     YN +I A CK  K      +
Sbjct: 406 PNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALEL 465

Query: 328 LKDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
           L++M  +   + P+  T ++I++GL   G  + A+ +   MI      D  TYT +I+  
Sbjct: 466 LREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTL 525

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
              G++ +A ++ + M      P  HT+  L+  LC +  V  +  LL++M+  G  P+ 
Sbjct: 526 AGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILC-RSDVDAAWDLLQEMMRNGHTPNE 584

Query: 445 ETFGKLRK 452
            TF  + K
Sbjct: 585 FTFKAVEK 592


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 251/485 (51%), Gaps = 20/485 (4%)

Query: 5   YHSRNKMISGCISFLRRYNSSE---PSTEALDAAKSISKIMLSSP-KVVLDTALDQSGIR 60
           +H  N  +S  +SFL     S+   P  E  D A+++ +++  S  +V L  +L  SGI 
Sbjct: 10  HHVSNFRLS--VSFLHSVALSDAKVPVEEEGDDAETVFRMINGSNLQVELKESLSSSGIH 67

Query: 61  VSPEIVEDVLEKFRNAG---TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           +S ++++ VL++ R +         F+++A   + + HS  +  +M+  L + R++  +W
Sbjct: 68  LSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 127

Query: 118 DLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAFNGL 172
           +L+  + TKR    +++  T  +++ + A++  V + V +F   ++      + A FN L
Sbjct: 128 ELL--IETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNAL 185

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           L  LC+ K++  A+ ++  +K +F PD +T++ILL GW        A   F EM   G  
Sbjct: 186 LRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKS---SEEAEAFFEEMKGKGLK 242

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD+VTY  ++DV CK   +++A  ++  M      P    Y+ ++   G+  + + A + 
Sbjct: 243 PDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREV 302

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM++ G   DVA YNA I  FC A +  +  +++ +M  KG++PN+ T N+    L  
Sbjct: 303 LKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSL 362

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
             +   ++ ++ RM+   C  +  +   +IKMF +  +++ A ++W+ M +K F      
Sbjct: 363 ANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSLV 422

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             VL++ LCD   V ++   L +M+EKG RPS  +F +++ L+    + D +  L +KM 
Sbjct: 423 SDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNLIQKMA 482

Query: 472 LLVKE 476
           +   E
Sbjct: 483 IFSTE 487


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 190/372 (51%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +  +E  V  Y ++I  L K+    +   L+  M  K    NV  +  I+    + + V 
Sbjct: 38  KMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVT 97

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           EA+  F+ M K G+  ++  ++ +L   C    V +A  +F  M +R  IP+  T++IL+
Sbjct: 98  EAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILI 157

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K   +  A  +F  M + G  PD+ TY  +VD  C   ++DEA  +   MD   C 
Sbjct: 158 DGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCA 217

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L++ +    RI++A     EM    +  D+  Y+ L+  FC+  + +    +
Sbjct: 218 PNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQEL 277

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           LK+M S G+ PN  T +I+L+GL   G  DEA+ + + M +   E +   YT++I+  C 
Sbjct: 278 LKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCT 337

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+LE A +++  + +K   P++ T++V+I+GL   G+ +++C L  +M   G  P+  T
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCT 397

Query: 447 FGKLRKLLIKEG 458
           +  + +  ++ G
Sbjct: 398 YNVIIQGFLRNG 409



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 191/379 (50%), Gaps = 4/379 (1%)

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCI 136
           T+A    K  E ++  + +V AY+++I+SL K R      D  + M  + +  +V T+  
Sbjct: 62  TMALQLLKKME-EKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+  +  + +V EA   F  M +  V  N   F  L+  LCK + + +A  +F+ M ++ 
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + PD  TY+ L++G+     +  A+++F  M   GC P++ +Y I+++  CK+GR+DEA 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           G++  M      P  F YS L+  +    R ++A +   EM   G+L ++  Y+ ++   
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADA 374
           CK       + +LK M    + PN     I++ G+   G+ + A  +F  + +K  +   
Sbjct: 301 CKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTV 360

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TYT+MI    +GG   +A ++++ M +   +P+  T++V+I G    G   ++  L+E+
Sbjct: 361 VTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEE 420

Query: 435 MIEKGIRPSGETFGKLRKL 453
           M+ KG      TF  L  L
Sbjct: 421 MVGKGFSADSSTFRMLSDL 439



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 155/318 (48%), Gaps = 6/318 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M K G+   L  FN LLS LC    +  A ++FD M K    PD  TYS ++ G  K  N
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A ++ ++M + GC P++V Y  ++D LCK   V EA+     M      P  F YS 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H +    R+ +A   F +M +  ++ +   +  LI   CK       + V + M  KG
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           + P+  T N +++G   R + DEA ++F  M  K C  +  +Y ++I   C+ G +++A 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +   M  K   P + T+S L+ G C  G   ++  LL++M   G+ P+  T+  +   L
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300

Query: 455 IKEGRED----VLKFLQE 468
            K G  D    +LK +QE
Sbjct: 301 CKHGHLDEAFELLKAMQE 318



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 141/274 (51%), Gaps = 1/274 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P   T++ LL G      +  A ++F EMV  G  PD++TY  +++ LCK G    AL +
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +K M+   C+P    Y+ ++ +   +  + +A+D F EM K GI  DV  Y++++  FC 
Sbjct: 68  LKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCN 127

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             +      + K M  + V PN  T  I+++GL  +    EA+ VF  M  K  E D  T
Sbjct: 128 LGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYT 187

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  ++  +C   ++++A K++  M  K   P++ ++++LING C  G + ++  LL +M 
Sbjct: 188 YNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMS 247

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            K + P   T+  L +   + GR    + L ++M
Sbjct: 248 HKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 160/327 (48%), Gaps = 8/327 (2%)

Query: 61  VSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           + P++     +L  F N G +  A   FK   ++    + V  +  +I+ L K R     
Sbjct: 111 IPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKV-TFTILIDGLCKKRMISEA 169

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
           W +   M  K +  +V T+  ++  Y    +++EA   FN+M + G   N+ ++N L++ 
Sbjct: 170 WLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILING 229

Query: 176 LCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            CKS  + +A+ +   M  +   PD  TYS L+ G+ +      A+E+ +EM   G  P+
Sbjct: 230 HCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPN 289

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++TY I++D LCK G +DEA  ++K+M  +   P  FIY++L+       ++E A + F 
Sbjct: 290 LITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFS 349

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            +   GI   V  Y  +I    K         + ++M   G  PNS T N+I+ G +  G
Sbjct: 350 NLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG 409

Query: 355 ETDEAYRVFRRMI-KLCEADADTYTMM 380
           +T  A R+   M+ K   AD+ T+ M+
Sbjct: 410 DTPNAVRLIEEMVGKGFSADSSTFRML 436


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 170/321 (52%), Gaps = 4/321 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++R   + + +  AV  FN M   G   N+  +N L++ LC+      A  + 
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D MK R  P+  T++ L++ + K   L  A+E++  M+     PD+ TYG +++ LC  
Sbjct: 247 RDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMY 306

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +DEA  +   M+   C P   IY+ L+H +    R+ED +  F EM + G++A+   Y
Sbjct: 307 GLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITY 366

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             LI  +C   +      V   M+S+   P+ RT N++L+GL   G+ ++A  +F  M K
Sbjct: 367 TVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRK 426

Query: 369 LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             E D +  TYT++I+  C+ G++E AF ++  +  K   P++ T++ +I+G C +G++ 
Sbjct: 427 R-EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIH 485

Query: 427 DSCVLLEDMIEKGIRPSGETF 447
           ++  L + M E G  P+   +
Sbjct: 486 EADSLFKKMKEDGFLPNESVY 506



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 173/394 (43%), Gaps = 19/394 (4%)

Query: 74  RNAGTLAFC-FFKWAEKQQNYEHSVR-AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-N 130
           R A +L+ C F  W     +Y   +R   H++        Q+    DL   M   R L +
Sbjct: 31  RTAASLSLCGFCFWIRAFSSYRKILRNGLHNL--------QFNDALDLFTRMVHSRPLPS 82

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC-KSKNVRKAQEIF 189
           +  F  ++   A++ + +  +  F  MQ  G+   L   N ++  +C  S+  R +  + 
Sbjct: 83  IIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLG 142

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             MK  F PD  T++ LL G+     +  A  +F +++  G  P++VTY  ++  LCK  
Sbjct: 143 KMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNR 202

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            ++ A+ +   M +   RP    Y+ LV       R  DA     +M K  I  +V  + 
Sbjct: 203 HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFT 262

Query: 310 ALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           ALI AF K  K    K +Y V+  M+   V P+  T   ++NGL   G  DEA ++F  M
Sbjct: 263 ALIDAFVKVGKLMEAKELYNVMIQMS---VYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319

Query: 367 IK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            +  C  +   YT +I  FC+   +E   K++  M  K  + +  T++VLI G C  G  
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRP 379

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +  +   M  +   P   T+  L   L   G+
Sbjct: 380 DVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK 413



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 162/360 (45%), Gaps = 12/360 (3%)

Query: 124 RTKRMLNVETFCIIMRKYARVQKV----------EEAVYTFNVMQKYGVTQNLAAFNGLL 173
           RT   L++  FC  +R ++  +K+           +A+  F  M       ++  F  LL
Sbjct: 31  RTAASLSLCGFCFWIRAFSSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLL 90

Query: 174 SALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           S + K         +F+ M+   IP    T +I++          RA     +M+  G  
Sbjct: 91  SVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFE 150

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD+VT+  +++  C   R+++A+ +   +     +P    Y+ L+        +  AV+ 
Sbjct: 151 PDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVEL 210

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F +M  NG   +V  YNAL+   C+  ++ +   +L+DM  + + PN  T   +++  + 
Sbjct: 211 FNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK 270

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+  EA  ++  MI++    D  TY  +I   C  G L++A +++  M+     P+   
Sbjct: 271 VGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVI 330

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           ++ LI+G C    V D   +  +M +KG+  +  T+  L +     GR DV + +  +M+
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +R Y+ +++ L    + +    +   MR + M +N+ T+ II++   ++ KVE+A   F 
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTY 203
            +   G+  N+  +  ++S  C+   + +A  +F  MK D F+P+   Y
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 203/442 (45%), Gaps = 52/442 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET----FC 135
           A  FF WA  +  + H+ ++Y  M+E L + R   +  + + +++ +    V+     F 
Sbjct: 102 ALQFFNWA-PELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRFFN 160

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            ++R Y +    +E+V  FN M+  GV+ ++  FN LL  L K      AQ +FD M   
Sbjct: 161 SLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLST 220

Query: 196 F--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +   PD+ T++IL+ G+ K+  +      F+EM    C+PD+VTY  +VD LC+AG+V+ 
Sbjct: 221 YGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNI 280

Query: 254 ALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           A  +V  M   ST   P    Y+ LV  Y +++ I++A+  F EM   G+  +   YN L
Sbjct: 281 AHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTL 340

Query: 312 IGAFCKANKFKNVYRVLKD-MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           I   C+  K   + ++ +  +   G  P++ T N ++N     G  ++A  VF +M+ L 
Sbjct: 341 IKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLN 400

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMK---------------------------- 401
              D+ TY+++I+  CQ G  E+A +++  +                             
Sbjct: 401 VRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRN 460

Query: 402 -------------LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
                        +KR      +F +LI G C +G       LL  M+ +   P  ET+ 
Sbjct: 461 GKTAKAERVFRQLMKRGTQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQ 520

Query: 449 KLRKLLIKEGREDVLKFLQEKM 470
            L   L+++G   V     EKM
Sbjct: 521 SLIDGLLQKGEPLVAYQTLEKM 542



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 175/452 (38%), Gaps = 81/452 (17%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LN--VETFCIIMRKYARVQKVEEAVYTFN 155
            Y+++++ L +  +  I  ++VN M  K   LN  V T+  ++R Y    +++EA+  F 
Sbjct: 264 TYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFE 323

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKD 213
            M   G+  N   +N L+  LC+ + + K ++IF+       FIPD+ T + L+      
Sbjct: 324 EMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNA 383

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-------C 266
            NL  A E+F +M+     PD  TY +++  LC+ G  + A  +   +           C
Sbjct: 384 GNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGC 443

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y  +        +   A   F ++ K G   D   +  LI   C+   F+  Y 
Sbjct: 444 TPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGT-QDPLSFKILIKGHCREGTFEAGYE 502

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----------------- 369
           +L  M  +   P+  T   +++GL+ +GE   AY+   +MIK                  
Sbjct: 503 LLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLL 562

Query: 370 ---CEADADTYTMM----------------IKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
              C  ++  + M+                +++    G  +KAFK+   +    ++  M 
Sbjct: 563 AKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLRDKAFKIVGLLYANGYVVDME 622

Query: 411 TF--------------------------------SVLINGLCDKGIVSDSCVLLEDMIEK 438
                                               +I GLC     S++  L  +++EK
Sbjct: 623 ELIGFLSHNRKFLLAHKLLLFCLEKHQNVDIDMCDTVIEGLCKMKRHSEAFGLYYELVEK 682

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G          LR  L   GR + +KFL ++M
Sbjct: 683 GNNQPLRCLENLRVALEARGRLEEVKFLSKRM 714



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 125/255 (49%), Gaps = 9/255 (3%)

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----LGIVKSMDSTVCRPTSFIY 273
           +A + F    + G   +  +Y +M+++L +A  ++ A      I +  + TV     F +
Sbjct: 101 KALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRF-F 159

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-N 332
           + L+ +YG     +++V  F  M+  G+   V  +N+L+    K  +      V  +M +
Sbjct: 160 NSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLS 219

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           + GV P++ T NI++ G       DE +R F+ M +  C+ D  TY  ++   C+ G++ 
Sbjct: 220 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVN 279

Query: 392 KAFKVWKYM--KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            A  V   M  K     P + T++ L+ G C K  + ++ V+ E+M+ KG++P+  T+  
Sbjct: 280 IAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNT 339

Query: 450 LRKLLIKEGREDVLK 464
           L K L +  + D +K
Sbjct: 340 LIKGLCEVQKIDKIK 354


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 210/437 (48%), Gaps = 4/437 (0%)

Query: 37  SISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           S+ +I+ + P    ++  L +  +  +PE+V  VL + ++    A  +F+WAE+  +  H
Sbjct: 70  SVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNN-AVNYFRWAERLTDRAH 128

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTF 154
              AY+S++  +A+ R++  +  ++  M           CI I+  + + +K+ EA    
Sbjct: 129 CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFI 188

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
             M+K       +A+  L+ AL  S++      +F  M++  +  +   ++ L+  + ++
Sbjct: 189 QTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFARE 248

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  EM      PD+V Y + +D   KAG+VD A      M +         Y
Sbjct: 249 GRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTY 308

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++      +R+ +AV+ F  M++N  +     YN +I  +  A KF++ Y +L+    
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRR 368

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           KG  P+  + N IL+ L  +G+ DEA + F  M K    +  TY +MI M C+ G+LE A
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             V   MK     P++ T +++++ LC    + D+C + E +  K  RP   T+  L + 
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 454 LIKEGREDVLKFLQEKM 470
           L + GR D    L E+M
Sbjct: 489 LGRHGRVDEAYKLYEQM 505



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+IE L +  +    + L   M    ++ N   +  ++R + +  + E+    +N M 
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
           + G + +L   N  +  + K+  + K + +F  +K+  FIPD+++Y+IL+ G  K     
Sbjct: 542 RLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+F  M + GC  D   Y  ++D  CK+G+V++A  +++ M +    PT   Y  ++
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E +  GI  +V +Y++LI  F K  +    Y +++++  KG+ 
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 721

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E  EA   F+ M  L C  +  TY+++I   C+  +  KAF  
Sbjct: 722 PNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           W+ M+ + F P++ T++ +I+GL   G + ++  L E   EKG
Sbjct: 782 WQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 190/390 (48%), Gaps = 9/390 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI  L K  +     +L   M + K++     +  ++  Y    K E+A       +
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQR 367

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           + G   ++ ++N +LS L +   V +A + F+ MK   IP+  TY+I+++   K   L  
Sbjct: 368 RKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLET 427

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  +   M D G  P+++T  IMVD LCKA R+D+A  I + +D   CRP +  Y  L+ 
Sbjct: 428 ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIE 487

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G   R+++A   + +M     + +  +Y +LI  F K  + ++ +++  +M   G +P
Sbjct: 488 GLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVW 397
           +    N  ++ +   GE ++   +F+ +  L    DA +YT++I    + G   +A++++
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             MK +  +     ++ +I+G C  G V+ +  LLE+M  KG  P+  T+G +   L K 
Sbjct: 608 YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKI 667

Query: 458 GREDVLKFLQE-------KMNLLVKEPLCD 480
            R D    L E       ++N+++   L D
Sbjct: 668 DRLDEAYMLFEEAKSKGIELNVVIYSSLID 697



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 187/375 (49%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       +++  + L+   R K  + +V ++  I+    R  +V+EA+  F  M
Sbjct: 342 AYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM 401

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +K  +  NL+ +N ++  LCK+  +  A  + D MKD    P+  T +I+++   K   L
Sbjct: 402 KKDAIP-NLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRL 460

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF  +    C PD VTY  +++ L + GRVDEA  + + M      P + +Y+ L
Sbjct: 461 DDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSL 520

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R ED    + EM + G   D+ + N  +    KA + +    + +++ + G 
Sbjct: 521 IRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF 580

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P++R+  I+++GL+  G   EAY +F  M +  C  D   Y  +I  FC+ G++ KA++
Sbjct: 581 IPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 640

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK K   P++ T+  +I+GL     + ++ +L E+   KGI  +   +  L     
Sbjct: 641 LLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFG 700

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E++
Sbjct: 701 KVGRIDEAYLIMEEL 715



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 3/300 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
            R+Y  +I  L K       ++L   M+ +  +L+   +  ++  + +  KV +A     
Sbjct: 584 ARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 643

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M+  G    +  +  ++  L K   + +A  +F+  K + I  +   YS L++G+GK  
Sbjct: 644 EMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVG 703

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I  E++  G  P++ T+  ++D L KA  + EAL   +SM    C P    YS
Sbjct: 704 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYS 763

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+H      +   A   + EM+K G   +V  Y  +I    KA        + +    K
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G   +S   N I+ GL       +AYR+F    +K C     T  +++    +   +E+A
Sbjct: 824 GGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 193/390 (49%), Gaps = 4/390 (1%)

Query: 76  AGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVET 133
           AG L   F  K    ++  + S R Y  +I++   I        +++ M TK  + NV T
Sbjct: 212 AGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 271

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM- 192
           + I++ +  R  K+EEA   F  M K+G+   +  FN L++  CK   V  A ++   M 
Sbjct: 272 YTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME 331

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    P+ +TY+ L+EG  +     +A  + R +VD G  PD VTY I+VD  CK G+++
Sbjct: 332 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 391

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  I  SM+S    P  F ++ L+       R+E A      M K GI  D   + ALI
Sbjct: 392 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 451

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
              CK  K K+V  + ++M        + T N  L+ L    + +EA  +  +M+K    
Sbjct: 452 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV 511

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
               T+T++I+  C+ GE   + K+ + MK     P+++T++++INGLC+ G V ++  +
Sbjct: 512 PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 571

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           L  M   G+ P+  T+  L K  +K GR D
Sbjct: 572 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 601



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           L+ A C+  ++ +A  +F+ M  ++   P+S TYSIL+ G  +   L  A ++ +EMV+ 
Sbjct: 169 LVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK 228

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC P   TY +++   C  G  D+A+ ++  M +  C P    Y++L+     E +IE+A
Sbjct: 229 GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 288

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F +M K+G+   +  +NALI  +CK     + +++L  M      PN RT N ++ G
Sbjct: 289 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 348

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L    ++ +A+ + RR++      D  TY +++  FC+ G+L  AF ++  M      P 
Sbjct: 349 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 408

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             TF+ LI+GLC  G +  +  +L  M++KGI     TF  L     K G+   + FL E
Sbjct: 409 GFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 468

Query: 469 KM 470
            M
Sbjct: 469 NM 470



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 153/319 (47%), Gaps = 8/319 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++       ++EEA      M + G   +   +  L+ A C      KA ++ 
Sbjct: 198 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKML 257

Query: 190 DCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  +P+  TY+IL++   ++  +  A  +FR+M+  G  P I+T+  +++  CK 
Sbjct: 258 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 317

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK---NGILADV 305
           G V  A  ++  M+   C+P    Y+ L+       R+  +   FL + +   NG+L D 
Sbjct: 318 GWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL---CRVSKSYKAFLLLRRVVDNGLLPDR 374

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN L+  FCK  +    + +   MNS G+ P+  T   +++GL   G  ++A  +   
Sbjct: 375 VTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGS 434

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+K     D  T+T +I   C+ G+ +    +++ M   R + + HTF+  ++ L     
Sbjct: 435 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 494

Query: 425 VSDSCVLLEDMIEKGIRPS 443
           ++++  +L  M++ G+ PS
Sbjct: 495 LNEANAMLGKMMKYGLVPS 513



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 165/352 (46%), Gaps = 12/352 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ +++   K  Q  + +++ N+M +  +  +  TF  ++    ++ ++E+A      M
Sbjct: 376 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 435

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
            K G++ +   F  L+   CK    +    +F+ M ++R +  + T++  L+  GKD  L
Sbjct: 436 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 495

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  +M+  G  P +VT+ I+++  C+AG    +L +++ M    C P  + Y+++
Sbjct: 496 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 555

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      R+E+A      M   G+  +   Y  L+ A  KA +    ++++  M   G 
Sbjct: 556 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 615

Query: 337 APNSRTCNIILNGL------IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
            PNS   + +L+G       IG         +  R +   E D +  +  +       ++
Sbjct: 616 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLM---DV 672

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           + A K+   +K K  +P+   ++ L+ GLC +G + ++  L +DM++ G+ P
Sbjct: 673 DHALKIRDEIK-KCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFP 723



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 183/408 (44%), Gaps = 40/408 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            + ++I+ L K+ + +    ++ +M  K + L+  TF  ++  + ++ K ++  + F  M
Sbjct: 411 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 470

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNL 216
            +         FN  L AL K   + +A  +    MK   +P   T++IL+EG  +    
Sbjct: 471 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGET 530

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             + ++   M   GC+P++ TY I+++ LC  GRV+EA  I+ SM S    P  F Y+VL
Sbjct: 531 ALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVL 590

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF--------------- 321
           V  +    R++ A      M KNG   +  +Y+AL+  F  +N                 
Sbjct: 591 VKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 650

Query: 322 -------------KNVYRVL--------KDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
                         +V+R++        +D   K   P     N ++ GL   G   EA 
Sbjct: 651 SLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEAD 710

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           ++ + M+K         + +I+ +C+  + +   +  K +   +F+PS  ++  +I+GL 
Sbjct: 711 QLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLR 770

Query: 421 DKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           ++G V ++  L+ D++   GI    E    + + L+KE  +D  K L+
Sbjct: 771 NEGRVQEAQKLVSDLVRHTGIEEEVEVTPSI-EFLMKEEEDDPDKCLK 817



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 175/421 (41%), Gaps = 18/421 (4%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P +   ++    N   L   FFKW  +Q +Y + +     ++  L       +  DL 
Sbjct: 1   MTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVL-------VSRDLF 53

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
              +   +L      +I         V + +   + M + G   +   ++ LL  L K  
Sbjct: 54  GVAQKAVVL------LIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLN 107

Query: 181 NVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
               A  ++  M  + F+     Y  ++    K+  +  A     +++  G   D     
Sbjct: 108 MGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCT 167

Query: 240 IMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            +V   C+   + EA  + + M     CRP S  YS+L+H      R+E+A     EM +
Sbjct: 168 SLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVE 227

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G       Y  LI A C         ++L +M +K   PN  T  I+++ L   G+ +E
Sbjct: 228 KGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEE 287

Query: 359 AYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           A  VFR+M+K  LC     T+  +I  +C+ G +  AF++   M+     P++ T++ L+
Sbjct: 288 ANGVFRKMLKHGLCPGII-TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 346

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
            GLC       + +LL  +++ G+ P   T+  L     KEG+ ++   +   MN    E
Sbjct: 347 EGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE 406

Query: 477 P 477
           P
Sbjct: 407 P 407


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 207/426 (48%), Gaps = 23/426 (5%)

Query: 34  AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY 93
            AK+I+ ++   P    D  L      +S   V   L   +   T AF FF W   ++ +
Sbjct: 58  TAKTIANLINYKPWS--DELLSSFTTSLSKTTVFQTLRHIK-VPTKAFLFFNWIH-EKGF 113

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET----FCIIMRKYARVQKVEE 149
            H+ + Y  M+E L + +   I  + + ++  +    V+     F  ++R Y      +E
Sbjct: 114 SHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIRSYGEAGLFKE 173

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILL 207
           +V  F  M+  GV+  +  FN +L  L K      A+E++D M   +   PD+ TY+IL+
Sbjct: 174 SVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILI 233

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+ K+  +      F+EM    C+PD+VTY  +VD LC+AG++  A  +V  M S  C+
Sbjct: 234 RGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGM-SKKCK 292

Query: 268 ---PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ L+  Y  +  +++A+D   EM   G+  ++  YN LI   C+A K+  +
Sbjct: 293 DLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKM 352

Query: 325 YRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             +L+ M   G + P++ T N ++N     G  DEA++VF  M KL   AD+ +Y+++I+
Sbjct: 353 KEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIR 412

Query: 383 MFCQGGELEKAFKVWKYMKLKRFI-------PSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
             CQ G+  KA  ++  +  K  +       P   ++  +   LC+ G    +  +L  +
Sbjct: 413 TLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQL 472

Query: 436 IEKGIR 441
           +++G +
Sbjct: 473 MKRGTQ 478



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 97/455 (21%), Positives = 181/455 (39%), Gaps = 83/455 (18%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCIIMRKYARVQKVEEAVYT 153
           V  Y+++++ L +  + ++  +LVN M  K      +V T+  ++R Y R Q+V+EA+  
Sbjct: 261 VVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDI 320

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWG 211
              M   G+  N+  +N L+  LC+++   K +EI + MK     IPD+ T++ L+    
Sbjct: 321 LEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHC 380

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----------------- 254
              NL  A ++F  M     + D  +Y +++  LC+ G   +A                 
Sbjct: 381 CAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSY 440

Query: 255 -----LGIVKSMDSTVCR---------------------PTSFIYSVLVHTYGVENRIED 288
                    K M   +C                      P S  Y +++  +  E   E+
Sbjct: 441 GPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLS--YQIVILGHCKEGSYEN 498

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
                + M +   L D+ +Y+ LI  F + +K       L+ M      P + T + ILN
Sbjct: 499 GYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILN 558

Query: 349 GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L+ +G   E+  V   M+ +    + +  T  +++    G  +KAFK+ + +    F  
Sbjct: 559 RLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNGFCV 618

Query: 408 SMHT-------------------FSVLIN-----GLCDKGIV--------SDSCVLLEDM 435
            M                     FS+  N     GLC+  I+        S++  L  ++
Sbjct: 619 KMDEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNIVILDLCKLNKASEAFSLCYEL 678

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++KG+         L   L   GR +   F+ +++
Sbjct: 679 VDKGLHQDLICLNDLVAALEAGGRTEEAAFISKRV 713


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 193/390 (49%), Gaps = 4/390 (1%)

Query: 76  AGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVET 133
           AG L   F  K    ++  + S R Y  +I++   I        +++ M TK  + NV T
Sbjct: 255 AGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 314

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM- 192
           + I++ +  R  K+EEA   F  M K+G+   +  FN L++  CK   V  A ++   M 
Sbjct: 315 YTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME 374

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    P+ +TY+ L+EG  +     +A  + R +VD G  PD VTY I+VD  CK G+++
Sbjct: 375 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 434

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  I  SM+S    P  F ++ L+       R+E A      M K GI  D   + ALI
Sbjct: 435 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALI 494

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
              CK  K K+V  + ++M        + T N  L+ L    + +EA  +  +M+K    
Sbjct: 495 DGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLV 554

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
               T+T++I+  C+ GE   + K+ + MK     P+++T++++INGLC+ G V ++  +
Sbjct: 555 PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 614

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           L  M   G+ P+  T+  L K  +K GR D
Sbjct: 615 LFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 644



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           L+ A C+  ++ +A  +F+ M  ++   P+S TYSIL+ G  +   L  A ++ +EMV+ 
Sbjct: 212 LVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK 271

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC P   TY +++   C  G  D+A+ ++  M +  C P    Y++L+     E +IE+A
Sbjct: 272 GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 331

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F +M K+G+   +  +NALI  +CK     + +++L  M      PN RT N ++ G
Sbjct: 332 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 391

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L    ++ +A+ + RR++      D  TY +++  FC+ G+L  AF ++  M      P 
Sbjct: 392 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 451

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             TF+ LI+GLC  G +  +  +L  M++KGI     TF  L     K G+   + FL E
Sbjct: 452 GFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 511

Query: 469 KM 470
            M
Sbjct: 512 NM 513



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 153/319 (47%), Gaps = 8/319 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++       ++EEA      M + G   +   +  L+ A C      KA ++ 
Sbjct: 241 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKML 300

Query: 190 DCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  +P+  TY+IL++   ++  +  A  +FR+M+  G  P I+T+  +++  CK 
Sbjct: 301 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 360

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK---NGILADV 305
           G V  A  ++  M+   C+P    Y+ L+       R+  +   FL + +   NG+L D 
Sbjct: 361 GWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC---RVSKSYKAFLLLRRVVDNGLLPDR 417

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN L+  FCK  +    + +   MNS G+ P+  T   +++GL   G  ++A  +   
Sbjct: 418 VTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGS 477

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+K     D  T+T +I   C+ G+ +    +++ M   R + + HTF+  ++ L     
Sbjct: 478 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 537

Query: 425 VSDSCVLLEDMIEKGIRPS 443
           ++++  +L  M++ G+ PS
Sbjct: 538 LNEANAMLGKMMKYGLVPS 556



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 165/352 (46%), Gaps = 12/352 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ +++   K  Q  + +++ N+M +  +  +  TF  ++    ++ ++E+A      M
Sbjct: 419 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 478

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
            K G++ +   F  L+   CK    +    +F+ M ++R +  + T++  L+  GKD  L
Sbjct: 479 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 538

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  +M+  G  P +VT+ I+++  C+AG    +L +++ M    C P  + Y+++
Sbjct: 539 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 598

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      R+E+A      M   G+  +   Y  L+ A  KA +    ++++  M   G 
Sbjct: 599 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 658

Query: 337 APNSRTCNIILNGL------IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
            PNS   + +L+G       IG         +  R +   E D +  +  +       ++
Sbjct: 659 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLM---DV 715

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           + A K+   +K K  +P+   ++ L+ GLC +G + ++  L +DM++ G+ P
Sbjct: 716 DHALKIRDEIK-KCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFP 766



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 183/408 (44%), Gaps = 40/408 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            + ++I+ L K+ + +    ++ +M  K + L+  TF  ++  + ++ K ++  + F  M
Sbjct: 454 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 513

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNL 216
            +         FN  L AL K   + +A  +    MK   +P   T++IL+EG  +    
Sbjct: 514 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGET 573

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             + ++   M   GC+P++ TY I+++ LC  GRV+EA  I+ SM S    P  F Y+VL
Sbjct: 574 ALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVL 633

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF--------------- 321
           V  +    R++ A      M KNG   +  +Y+AL+  F  +N                 
Sbjct: 634 VKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 693

Query: 322 -------------KNVYRVL--------KDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
                         +V+R++        +D   K   P     N ++ GL   G   EA 
Sbjct: 694 SLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEAD 753

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           ++ + M+K         + +I+ +C+  + +   +  K +   +F+PS  ++  +I+GL 
Sbjct: 754 QLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLR 813

Query: 421 DKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           ++G V ++  L+ D++   GI    E    + + L+KE  +D  K L+
Sbjct: 814 NEGRVQEAQKLVSDLVRHTGIEEEVEVTPSI-EFLMKEEEDDPDKCLK 860



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 181/440 (41%), Gaps = 18/440 (4%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           +++ P    D  L      ++P +   ++    N   L   FFKW  +Q +Y + +    
Sbjct: 25  LINKPNWEHDKTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRI 84

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
            ++  L       +  DL    +   +L      +I         V + +   + M + G
Sbjct: 85  QLLGVL-------VSRDLFGVAQKAVVL------LIQECEDSENGVVKLMGALDGMTELG 131

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
              +   ++ LL  L K      A  ++  M  + F+     Y  ++    K+  +  A 
Sbjct: 132 FRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAE 191

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHT 279
               +++  G   D      +V   C+   + EA  + + M     CRP S  YS+L+H 
Sbjct: 192 MFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHG 251

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                R+E+A     EM + G       Y  LI A C         ++L +M +K   PN
Sbjct: 252 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 311

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVW 397
             T  I+++ L   G+ +EA  VFR+M+K  LC     T+  +I  +C+ G +  AF++ 
Sbjct: 312 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII-TFNALINGYCKEGWVVSAFQLL 370

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M+     P++ T++ L+ GLC       + +LL  +++ G+ P   T+  L     KE
Sbjct: 371 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 430

Query: 458 GREDVLKFLQEKMNLLVKEP 477
           G+ ++   +   MN    EP
Sbjct: 431 GQLNMAFNIFNSMNSAGLEP 450


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 206/452 (45%), Gaps = 22/452 (4%)

Query: 27  PSTEALDAAKSISKIMLSS-----PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
           P      AA  +++++L+      P       L   G+ +S +++  +L + R A  LA 
Sbjct: 40  PPIAPSPAADELARLLLAHHNPFHPAESPLQLLSGGGVSLSGDLLVQILLRLRGASKLAL 99

Query: 82  CFFKWAEKQQ---NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
                A       N +    AY +++++L + RQ+   W +V         +  TF ++ 
Sbjct: 100 SLLHAARLHPSFVNTQPRSDAYDAVVDALGRARQFDAAWRVVVDASADGAASPRTFAVLA 159

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAA-FNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           R+Y       +A+  F+ M+ +   +  AA F  LL  LCK K  + A E+F+  K ++ 
Sbjct: 160 RRYVAAGMTRQAIRAFDDMEAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYKYG 219

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------- 250
           P+ K YSIL+ GW K      A++  ++M+  G  P+IVTY I+++ +C+          
Sbjct: 220 PNEKMYSILIYGWCKVNRSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRF 279

Query: 251 ---VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              V  A  ++K M      P    YS+++H Y   ++ E  +  F  M++ GI   VA 
Sbjct: 280 DRTVHAAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVAT 339

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y ++I       + ++   +L +M ++GV P+  T N  L    GR +   A  ++ +M 
Sbjct: 340 YTSVIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMK 399

Query: 368 ---KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
               L   D  TY +++ MF +         +W  M      P + ++++LI+  CD   
Sbjct: 400 APGSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQK 459

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
             ++C    +MIEKG  P   TF  L + LI+
Sbjct: 460 WREACQFFMEMIEKGFLPQKITFETLYRGLIQ 491



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 4/223 (1%)

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           DL+  MR + +  +V ++ II+  Y+R  K E  +  F  M++ G+   +A +  ++  L
Sbjct: 288 DLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCL 347

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNP 233
                +   + + D M  +   P   TY+  L+ +    ++  A E++ +M   G    P
Sbjct: 348 SSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPGSLTAP 407

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI TY I++ +  K  R    + I   M  +   P    Y++L+H +    +  +A   F
Sbjct: 408 DIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWREACQFF 467

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +EM + G L     +  L     +A+  +   R+ + ++ +  
Sbjct: 468 MEMIEKGFLPQKITFETLYRGLIQADMLRTWRRLKRRVDEEAA 510


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 205/396 (51%), Gaps = 18/396 (4%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
            LE F  AG   F              S  + + M+ SL K  +  ++  +   M  +R+
Sbjct: 178 ALEGFDRAGDYGF------------RLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI 225

Query: 129 -LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
            +NV TF +++    +V K ++A      M+ +G + ++  +N ++   CK+  + KA  
Sbjct: 226 GVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADA 285

Query: 188 IFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M   R  P+  T++IL++G+ +D N+  A+++F EM   G  P++VTY  +++ LC
Sbjct: 286 LLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLC 345

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G++DEALG+   M     +P    Y+ L++ +  +  +++A +   ++ K G+  +V 
Sbjct: 346 SNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVI 405

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI A+ KA +  + + +   M   GV PN  T N ++ G    G   EA ++ + M
Sbjct: 406 TFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465

Query: 367 -IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL---KRFIPSMHTFSVLINGLCDK 422
                +AD  TY +++   C+ GE  KA ++   M L   K    ++ T++VLI G C+K
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNK 525

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           G + ++  LL +M+EKG+ P+  T+  LR  ++++G
Sbjct: 526 GKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 561



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 190/418 (45%), Gaps = 20/418 (4%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF---- 134
           L  C+FKW +K+    H+V  +  ++  LA  + Y  +  L+++       +  T     
Sbjct: 89  LILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSL 148

Query: 135 -------C-------IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
                  C       +++  Y +  +++ A+  F+    YG   +  + N +L +L K  
Sbjct: 149 SVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEG 208

Query: 181 NVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            +   + ++  M  R I  +  T+ +++ G  K     +A ++  +M   G +P ++TY 
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++D  CKAG++ +A  ++K M +    P    +++L+  +  +  +  A   F EM++ 
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  +V  YN+LI   C   K      +   M+  G+ PN  T N ++NG   +    EA
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEA 388

Query: 360 YRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +   + K   A +  T+  +I  + + G ++ AF +   M      P++ T++ LI G
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVG 448

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
            C +G V ++  L ++M   G++    T+  L   L K+G       L ++M L+ K+
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKK 506



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 57/323 (17%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL--LEGWGKDP 214
           +++G   N+  F  LL  L  +KN  K + + D   K+    +S  +  L  L  WG   
Sbjct: 99  KEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWG--- 155

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                           C   I+   ++V    K G +D AL           R ++   +
Sbjct: 156 ----------------CANSIIV-DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCN 198

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++ +   E RI      + EM +  I  +V  ++ +I   CK  KF+    V++DM + 
Sbjct: 199 PMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW 258

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
           G +P+  T N I++G                                  +C+ G++ KA 
Sbjct: 259 GFSPSVITYNTIIDG----------------------------------YCKAGKMFKAD 284

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            + K M  KR  P+  TF++LI+G C    V+ +  + E+M  +G++P+  T+  L   L
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 455 IKEGREDVLKFLQEKMNLLVKEP 477
              G+ D    LQ+KM+ +  +P
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKP 367



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++  + R   V+EA      M+  G+  +L  +N L+ ALCK    RKA  + 
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 190 DCM----KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           D M    K     +  TY++L++G+     L  A  +  EM++ G  P+  TY I+ D +
Sbjct: 498 DEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEM 557

Query: 246 CKAGRVDEALG 256
            + G + +  G
Sbjct: 558 MEKGFIPDIDG 568


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 198/409 (48%), Gaps = 4/409 (0%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQ 112
           L + G+ VS      +L      G +   +  + E  +   E +V   + M+ +L K R+
Sbjct: 213 LRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRK 272

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           ++ +   ++ M  K +  ++ T+  ++  Y R   VEEA    N     G+   L  +N 
Sbjct: 273 FENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNA 332

Query: 172 LLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           +L  LCK     +A+++  + ++    P++ TY+ LL    +  N+  A+EIF EM   G
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG 392

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+V++  ++ VL + G + +AL   + M+ +   P + IY++L+  +     + DA+
Sbjct: 393 VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               EM   G   DV  YN  +   CK   F +   +  +M  +G+ P+  T   ++ G 
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G  D+A  +F  M++   + D  TY  +I  FC+ GE+ +A ++W  M  K  IP  
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            ++  ++NG C  G++ ++  L + M+EKGIRP+  T   L K   + G
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG 621



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 38/395 (9%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E  +  Y++++  L KI +Y    D L+  ++     N  T+  ++ +  R   + EA  
Sbjct: 324 EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE 383

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
            F+ M + GV  +L +F+ L+  L ++ ++ +A   F  M +   +PD+  Y+IL++G+ 
Sbjct: 384 IFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFC 443

Query: 212 KDPNLPRARE-----------------------------------IFREMVDTGCNPDIV 236
           ++  L  A +                                   +F EMV+ G  PD  
Sbjct: 444 RNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFY 503

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           T+  ++   CK G +D+AL + ++M  T  +P    Y+ L+  +     +  A + + +M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            +  I+ D   Y  ++  FC +        +   M  KG+ PN  TCN ++ G    G+ 
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +AY    +MI      D+ +Y  +I  + +   LEKAF +   M+ +    ++ T++++
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +NG C +G + ++  +L  MIE GI P G T+  L
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 170/347 (48%), Gaps = 3/347 (0%)

Query: 99  AYHSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           ++ S+I  LA+    YQ +       R+  + +   + I++  + R   + +A+   + M
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
              G   ++  +N  L+ LCK K    A  +F+ M +R  +PD  T++ L+ G+ KD N+
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A  +F  MV T   PD VTY  ++D  CKAG +  A  +   M      P    Y  +
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +     + +A++   +M + GI  ++   N LI  +C++      Y  L  M S G+
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+S + N +++G +     ++A+ +   M K   + +  TY +++  FC  G++++A +
Sbjct: 639 IPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           V + M      P   T+S LING   +  + ++    ++M+++G+ P
Sbjct: 699 VLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 20/399 (5%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVET-------------- 133
           N++HS  +  +M+  L + R+       +  +V      R+  VE+              
Sbjct: 130 NFKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLI 189

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           + +++R Y + +K+ E    F ++++ GV+ ++ A N LL  L ++  V  A EI+ + +
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +     +  T +I++    KD           +M   G   DIVTY  +++  C+ G V+
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++ S  S    P    Y+ +++      + + A D  +EM + G+  + A YN L+
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
              C+ +       +  +M+ +GV P+  + + ++  L   G   +A   FR M +    
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D   YT++I  FC+ G L  A K+   M  +     + T++  +NGLC K + +D+ +L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             +M+E+G+ P   TF  L +   K+G  D    L E M
Sbjct: 490 FNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 159/377 (42%), Gaps = 36/377 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S+ A + ++  L +     + W++    +R    LNV T  I++    + +K E  ++  
Sbjct: 221 SINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFL 280

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M+  GV  ++  +N L++A C+   V +A ++ +    R + P   TY+ +L G  K 
Sbjct: 281 SDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKI 340

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               RA+++  EM+  G  P+  TY  ++  +C+   + EA  I   M      P    +
Sbjct: 341 GKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSF 400

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+        +  A+  F EME++GI+ D  +Y  LI  FC+     +  ++  +M +
Sbjct: 401 SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           +G   +  T N  LNGL  +    +A  +F  M++                         
Sbjct: 461 RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE------------------------- 495

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
                    +  +P  +TF+ LI G C  G +  +  L E M+   ++P   T+  L   
Sbjct: 496 ---------RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 454 LIKEGREDVLKFLQEKM 470
             K G     K L + M
Sbjct: 547 FCKAGEMGRAKELWDDM 563



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 125/282 (44%), Gaps = 37/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++ +  L K + +     L N M  + M+ +  TF  ++R Y +   +++A+  F 
Sbjct: 467 VVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFE 526

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW---- 210
            M +  +  +   +N L+   CK+  + +A+E++D M +   IPD  +Y  +L G+    
Sbjct: 527 AMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586

Query: 211 ---------------GKDPNL----------------PRAREIFREMVDTGCNPDIVTYG 239
                          G  PNL                P+A E   +M+  G  PD  +Y 
Sbjct: 587 LLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYN 646

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++D   K   +++A  ++  M+    +     Y+++++ +  E ++++A     +M + 
Sbjct: 647 TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI 706

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           GI  D A Y++LI      +  K  +R   +M  +G+ P+ R
Sbjct: 707 GINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 188/375 (50%), Gaps = 3/375 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++  + S R Y  +I++   I        +++ M TK  + NV T+ I++ +  R  K+E
Sbjct: 293 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 352

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA   F  M K+G+   +  FN L++  CK   V  A ++   M K    P+ +TY+ L+
Sbjct: 353 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 412

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           EG  +     +A  + R +VD G  PD VTY I+VD  CK G+++ A  I  SM+S    
Sbjct: 413 EGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE 472

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F ++ L+       R+E A      M K GI  D   + ALI   CK  K K+V  +
Sbjct: 473 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFL 532

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M        + T N  L+ L    + +EA  +  +M+K        T+T++I+  C+
Sbjct: 533 FENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCR 592

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            GE   + K+ + MK     P+++T++++INGLC+ G V ++  +L  M   G+ P+  T
Sbjct: 593 AGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFT 652

Query: 447 FGKLRKLLIKEGRED 461
           +  L K  +K GR D
Sbjct: 653 YAVLVKAHVKAGRLD 667



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           L+ A C+  ++ +A  +F+ M  ++   P+S TYSIL+ G  +   L  A ++ +EMV+ 
Sbjct: 235 LVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK 294

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC P   TY +++   C  G  D+A+ ++  M +  C P    Y++L+     E +IE+A
Sbjct: 295 GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 354

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F +M K+G+   +  +NALI  +CK     + +++L  M      PN RT N ++ G
Sbjct: 355 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 414

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L    ++ +A+ + RR++      D  TY +++  FC+ G+L  AF ++  M      P 
Sbjct: 415 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 474

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             TF+ LI+GLC  G +  +  +L  M++KGI     TF  L     K G+   + FL E
Sbjct: 475 GFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 534

Query: 469 KM 470
            M
Sbjct: 535 NM 536



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 153/319 (47%), Gaps = 8/319 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++       ++EEA      M + G   +   +  L+ A C      KA ++ 
Sbjct: 264 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKML 323

Query: 190 DCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  +P+  TY+IL++   ++  +  A  +FR+M+  G  P I+T+  +++  CK 
Sbjct: 324 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 383

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK---NGILADV 305
           G V  A  ++  M+   C+P    Y+ L+       R+  +   FL + +   NG+L D 
Sbjct: 384 GWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC---RVSKSYKAFLLLRRVVDNGLLPDR 440

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN L+  FCK  +    + +   MNS G+ P+  T   +++GL   G  ++A  +   
Sbjct: 441 VTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGS 500

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+K     D  T+T +I   C+ G+ +    +++ M   R + + HTF+  ++ L     
Sbjct: 501 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 560

Query: 425 VSDSCVLLEDMIEKGIRPS 443
           ++++  +L  M++ G+ PS
Sbjct: 561 LNEANAMLGKMMKYGLVPS 579



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 179/392 (45%), Gaps = 24/392 (6%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            + ++I+ L K+ + +    ++ +M  K + L+  TF  ++  + ++ K ++  + F  M
Sbjct: 477 TFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 536

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNL 216
            +         FN  L AL K   + +A  +    MK   +P   T++IL+EG  +    
Sbjct: 537 VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGET 596

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             + ++   M   GC+P++ TY I+++ LC  GRV+EA  I+ SM S    P  F Y+VL
Sbjct: 597 ALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVL 656

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF--------------- 321
           V  +    R++ A      M KNG   +  +Y+AL+  F  +N                 
Sbjct: 657 VKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDAR 716

Query: 322 -----KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376
                +N    L +   K   P     N ++ GL   G   EA ++ + M+K        
Sbjct: 717 SLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKA 776

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
            + +I+ +C+  + +   +  K +   +F+PS  ++  +I+GL ++G V ++  L+ D++
Sbjct: 777 ISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLV 836

Query: 437 -EKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
              GI    E    + + L+KE  +D  K L+
Sbjct: 837 RHTGIEEEVEVTPSI-EFLMKEEEDDPDKCLK 867



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 159/352 (45%), Gaps = 28/352 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ +++   K  Q  + +++ N+M +  +  +  TF  ++    ++ ++E+A      M
Sbjct: 442 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 501

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
            K G++ +   F  L+   CK    +    +F+ M ++R +  + T++  L+  GKD  L
Sbjct: 502 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 561

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  +M+  G  P +VT+ I+++  C+AG    +L +++ M    C P  + Y+++
Sbjct: 562 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 621

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      R+E+A      M   G+  +   Y  L+ A  KA +    ++++  M   G 
Sbjct: 622 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 681

Query: 337 APNSRTCNIILNGL------IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
            PNS   + +L+G       IG         +  R +   E D +         C   E+
Sbjct: 682 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNN---------CLSNEI 732

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           +K             +P+   ++ L+ GLC +G + ++  L +DM++ G+ P
Sbjct: 733 KKC-----------GVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFP 773



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 181/440 (41%), Gaps = 18/440 (4%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           +++ P    D  L      ++P +   ++    N   L   FFKW  +Q +Y + +    
Sbjct: 48  LINKPNWEHDKTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRI 107

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
            ++  L       +  DL    +   +L      +I         V + +   + M + G
Sbjct: 108 QLLGVL-------VSRDLFGVAQKAVVL------LIQECEDSENGVVKLMGALDGMTELG 154

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
              +   ++ LL  L K      A  ++  M  + F+     Y  ++    K+  +  A 
Sbjct: 155 FRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAE 214

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHT 279
               +++  G   D      +V   C+   + EA  + + M     CRP S  YS+L+H 
Sbjct: 215 MFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHG 274

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                R+E+A     EM + G       Y  LI A C         ++L +M +K   PN
Sbjct: 275 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 334

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVW 397
             T  I+++ L   G+ +EA  VFR+M+K  LC     T+  +I  +C+ G +  AF++ 
Sbjct: 335 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII-TFNALINGYCKEGWVVSAFQLL 393

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M+     P++ T++ L+ GLC       + +LL  +++ G+ P   T+  L     KE
Sbjct: 394 SVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 453

Query: 458 GREDVLKFLQEKMNLLVKEP 477
           G+ ++   +   MN    EP
Sbjct: 454 GQLNMAFNIFNSMNSAGLEP 473


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 198/409 (48%), Gaps = 4/409 (0%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQ 112
           L + G+ VS      +L      G +   +  + E  +   E +V   + M+ +L K R+
Sbjct: 213 LRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRK 272

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           ++ +   ++ M  K +  ++ T+  ++  Y R   VEEA    N     G+   L  +N 
Sbjct: 273 FENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNA 332

Query: 172 LLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           +L  LCK     +A+++  + ++    P++ TY+ LL    +  N+  A+EIF EM   G
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG 392

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+V++  ++ VL + G + +AL   + M+ +   P + IY++L+  +     + DA+
Sbjct: 393 VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               EM   G   DV  YN  +   CK   F +   +  +M  +G+ P+  T   ++ G 
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G  D+A  +F  M++   + D  TY  +I  FC+ GE+ +A ++W  M  K  IP  
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            ++  ++NG C  G++ ++  L + M+EKGIRP+  T   L K   + G
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG 621



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 38/395 (9%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E  +  Y++++  L KI +Y    D L+  ++     N  T+  ++ +  R   + EA  
Sbjct: 324 EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE 383

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
            F+ M + GV  +L +F+ L+  L ++ ++ +A   F  M +   +PD+  Y+IL++G+ 
Sbjct: 384 IFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFC 443

Query: 212 KDPNLPRARE-----------------------------------IFREMVDTGCNPDIV 236
           ++  L  A +                                   +F EMV+ G  PD  
Sbjct: 444 RNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFY 503

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           T+  ++   CK G +D+AL + ++M  T  +P    Y+ L+  +     +  A + + +M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            +  I+ D   Y  ++  FC +        +   M  KG+ PN  TCN ++ G    G+ 
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +AY    +MI      D+ +Y  +I  + +   LEKAF +   M+ +    ++ T++++
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +NG C +G + ++  +L  MIE GI P G T+  L
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 170/347 (48%), Gaps = 3/347 (0%)

Query: 99  AYHSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           ++ S+I  LA+    YQ +       R+  + +   + I++  + R   + +A+   + M
Sbjct: 399 SFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEM 458

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
              G   ++  +N  L+ LCK K    A  +F+ M +R  +PD  T++ L+ G+ KD N+
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A  +F  MV T   PD VTY  ++D  CKAG +  A  +   M      P    Y  +
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +     + +A++   +M + GI  ++   N LI  +C++      Y  L  M S G+
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+S + N +++G +     ++A+ +   M K   + +  TY +++  FC  G++++A +
Sbjct: 639 IPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           V + M      P   T+S LING   +  + ++    ++M+++G+ P
Sbjct: 699 VLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 2/337 (0%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKD 194
           +++R Y + +K+ E    F ++++ GV+ ++ A N LL  L ++  V  A EI+ + ++ 
Sbjct: 192 LLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRG 251

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
               +  T +I++    KD           +M   G   DIVTY  +++  C+ G V+EA
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++ S  S    P    Y+ +++      + + A D  +EM + G+  + A YN L+  
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
            C+ +       +  +M+ +GV P+  + + ++  L   G   +A   FR M +     D
Sbjct: 372 ICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPD 431

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              YT++I  FC+ G L  A K+   M  +     + T++  +NGLC K + +D+ +L  
Sbjct: 432 NVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFN 491

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +M+E+G+ P   TF  L +   K+G  D    L E M
Sbjct: 492 EMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 159/377 (42%), Gaps = 36/377 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S+ A + ++  L +     + W++    +R    LNV T  I++    + +K E  ++  
Sbjct: 221 SINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFL 280

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M+  GV  ++  +N L++A C+   V +A ++ +    R + P   TY+ +L G  K 
Sbjct: 281 SDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKI 340

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               RA+++  EM+  G  P+  TY  ++  +C+   + EA  I   M      P    +
Sbjct: 341 GKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSF 400

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+        +  A+  F EME++GI+ D  +Y  LI  FC+     +  ++  +M +
Sbjct: 401 SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           +G   +  T N  LNGL  +    +A  +F  M++                         
Sbjct: 461 RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE------------------------- 495

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
                    +  +P  +TF+ LI G C  G +  +  L E M+   ++P   T+  L   
Sbjct: 496 ---------RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 454 LIKEGREDVLKFLQEKM 470
             K G     K L + M
Sbjct: 547 FCKAGEMGRAKELWDDM 563



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 125/282 (44%), Gaps = 37/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++ +  L K + +     L N M  + M+ +  TF  ++R Y +   +++A+  F 
Sbjct: 467 VVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFE 526

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW---- 210
            M +  +  +   +N L+   CK+  + +A+E++D M +   IPD  +Y  +L G+    
Sbjct: 527 AMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586

Query: 211 ---------------GKDPNL----------------PRAREIFREMVDTGCNPDIVTYG 239
                          G  PNL                P+A E   +M+  G  PD  +Y 
Sbjct: 587 LLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYN 646

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++D   K   +++A  ++  M+    +     Y+++++ +  E ++++A     +M + 
Sbjct: 647 TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI 706

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           GI  D A Y++LI      +  K  +R   +M  +G+ P+ R
Sbjct: 707 GINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 185/387 (47%), Gaps = 7/387 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           + N   SV  +   + S AK +QY  +  L N M    +  NV +  +++    R+  V+
Sbjct: 81  RMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVD 140

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            AV     M K G+    + FN L++ LC    +++A E+F+ M  R   P+  +Y+ ++
Sbjct: 141 FAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTII 200

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K  N   A ++F++M   GC PD+VTY  ++D LCK   V++A+  +  M      
Sbjct: 201 NGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIP 260

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F Y+ +VH + +  ++ +A   F EM    ++ D      L+   CK         V
Sbjct: 261 PNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLV 320

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            + M  KGV PN  T N +++G   +   +EA +VF  MI+  C     +Y ++I  FC+
Sbjct: 321 FETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCK 380

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              +++A  +   M  K   P   T+S L+ GLC  G   ++  + ++M   G+ P+  T
Sbjct: 381 SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVT 440

Query: 447 FGKLRKLLIKEGRED----VLKFLQEK 469
           +  L     K G  D    +LK +QEK
Sbjct: 441 YSILLDGFCKHGHLDEALKLLKSMQEK 467



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 180/369 (48%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +   ++++I  L    + +   +L N M R     NV ++  I+    +      AV  F
Sbjct: 157 TASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVF 216

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKD 213
             M++ G   ++  +N ++ +LCK + V  A E    M DR IP +  TY+ ++ G+   
Sbjct: 217 KKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCIL 276

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F+EMV     PD VT  I+VD LCK G V EA  + ++M      P    Y
Sbjct: 277 GQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTY 336

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y ++  + +A   F  M + G    V  YN LI  FCK+ +      +L +M  
Sbjct: 337 NALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYH 396

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           K + P++ T + ++ GL   G   EA  +F+ M       +  TY++++  FC+ G L++
Sbjct: 397 KALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDE 456

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A K+ K M+ K+  P++   ++LI G+   G +  +  L   +   GIRP+  T+  + K
Sbjct: 457 ALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIK 516

Query: 453 LLIKEGRED 461
            L+KEG  D
Sbjct: 517 GLLKEGLSD 525



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 190/383 (49%), Gaps = 12/383 (3%)

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCI 136
           ++A   FK  E Q   +  V  Y+++I+SL K R      + ++ M  + +  NV T+  
Sbjct: 210 SMAVDVFKKME-QNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNC 268

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++  +  + ++ EA   F  M    V  +      L+  LCK   V +A+ +F+ M ++ 
Sbjct: 269 MVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKG 328

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P+  TY+ L++G+     +  A+++F  M+  GC P + +Y I+++  CK+ R+DEA 
Sbjct: 329 VEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAK 388

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M      P +  YS L+       R ++A++ F EM   G+L ++  Y+ L+  F
Sbjct: 389 SLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGF 448

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA- 374
           CK        ++LK M  K + PN     I++ G+   G+ + A  +F ++     AD  
Sbjct: 449 CKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLF----ADGI 504

Query: 375 ----DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                TYT+MIK   + G  ++A+ +++ M+   F+P+  +++V+I G       S +  
Sbjct: 505 RPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIR 564

Query: 431 LLEDMIEKGIRPSGETFGKLRKL 453
           L+++M+ K    +  TF  L  L
Sbjct: 565 LIDEMVGKRFSANLSTFQMLLDL 587



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 175/357 (49%), Gaps = 3/357 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++ +E +V +Y+++I  L K     +  D+   M       +V T+  I+    + + V 
Sbjct: 186 RRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVN 245

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           +A+   + M   G+  N+  +N ++   C    + +A  +F  M  R  +PD+ T +IL+
Sbjct: 246 DAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILV 305

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K+  +  AR +F  M + G  P+I TY  ++D  C    ++EA  + + M    C 
Sbjct: 306 DGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCA 365

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L++ +    R+++A     EM    +  D   Y+ L+   C+  + K    +
Sbjct: 366 PGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNI 425

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            K+M S G+ PN  T +I+L+G    G  DEA ++ + M  K  E +   +T++I+    
Sbjct: 426 FKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFI 485

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            G+LE A +++  +      P++ T++V+I GL  +G+  ++  L   M + G  P+
Sbjct: 486 AGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPN 542



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 2/259 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  +M  Y   + + EA   F +M + G    + ++N L++  CKS+ + +A+ + 
Sbjct: 332 NISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLL 391

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  + + PD+ TYS L++G  +      A  IF+EM   G  P++VTY I++D  CK 
Sbjct: 392 AEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKH 451

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +DEAL ++KSM      P    +++L+    +  ++E A + F ++  +GI   +  Y
Sbjct: 452 GHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTY 511

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
             +I    K       Y + + M   G  PNS + N+++ G +   ++  A R+   M+ 
Sbjct: 512 TVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVG 571

Query: 368 KLCEADADTYTMMIKMFCQ 386
           K   A+  T+ M++ +  Q
Sbjct: 572 KRFSANLSTFQMLLDLESQ 590



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 36/264 (13%)

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  MV     P +  +G  +    K  +    + +   MD        +  +VL++    
Sbjct: 76  FYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCR 135

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
            N ++ AV    +M K GI    + +NALI   C   K K    +  +M  +G  PN  +
Sbjct: 136 LNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVIS 195

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIK----------------LCE--------------- 371
            N I+NGL   G T  A  VF++M +                LC+               
Sbjct: 196 YNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEML 255

Query: 372 -----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 +  TY  M+  FC  G+L +A +++K M  +  +P   T ++L++GLC +G+VS
Sbjct: 256 DRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVS 315

Query: 427 DSCVLLEDMIEKGIRPSGETFGKL 450
           ++ ++ E M EKG+ P+  T+  L
Sbjct: 316 EARLVFETMTEKGVEPNISTYNAL 339



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 1/198 (0%)

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           +D+AL     M     RP+   +   + ++  + +    V    +M+  G+  +V   N 
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           LI   C+ N       +L  M   G+ P + T N ++NGL   G+  EA  +F  M++  
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 371 -EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            E +  +Y  +I   C+ G    A  V+K M+     P + T++ +I+ LC   +V+D+ 
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 430 VLLEDMIEKGIRPSGETF 447
             L +M+++GI P+  T+
Sbjct: 249 EFLSEMLDRGIPPNVFTY 266


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 196/392 (50%), Gaps = 7/392 (1%)

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCI 136
           T+A    K  E ++  + +V  Y ++I+SL K +      + ++ M  + +  NV T+  
Sbjct: 99  TMAIQLLKKME-EKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSS 157

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+  +  + +  EA   F  M +  V  +   FN L+  L K   + +AQ +F+ M ++ 
Sbjct: 158 ILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKG 217

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P+  TY+ L++G+     +  A+++F  MV  GC P + +Y I++   CK+GR+DEA 
Sbjct: 218 VEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAK 277

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           G++  M      P +  YS L+  +  + R +DA     EM   G+L D+  Y+ ++   
Sbjct: 278 GLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGL 337

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADA 374
           CK       + +LK M    + PN     I++ G+   G+ + A  +F  + +K  + D 
Sbjct: 338 CKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDV 397

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TYT+MI    +GG   +A ++++ M +   +P+  T++V+I G    G  S++  L+E+
Sbjct: 398 VTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEE 457

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           M+ +G      TF  L  L   E R++++   
Sbjct: 458 MVGRGFSADSSTFQMLSDL---ESRDEIISLF 486



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 196/384 (51%), Gaps = 3/384 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +  YE  V  Y ++I  L K+    +   L+  M  K    NV  +  I+    + + + 
Sbjct: 75  KMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLIT 134

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           EA+   + M   G++ N+  ++ +L   C      +A  +F  M +R  +PD+ T++IL+
Sbjct: 135 EAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV 194

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K+  +  A+ +F  M++ G  P++ TY  ++D  C   ++DEA  +   M    C 
Sbjct: 195 DGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCA 254

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P+   Y++L+  +    RI++A     EM    +  D   Y+ L+  FC+  + ++  ++
Sbjct: 255 PSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKL 314

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           L++M S G+ P+  T +I+L+GL  +G  DEA+ + + M +   E +   YT++I+  C 
Sbjct: 315 LEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCN 374

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+LE A +++  + +K   P + T++V+I+GL   G+ +++C L  DM   G  P+  T
Sbjct: 375 FGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCT 434

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  + +  ++ G       L E+M
Sbjct: 435 YNVIIQGFLRNGDTSNAGRLIEEM 458



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 2/327 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           L N  +     N  TF  ++   +   K+ +AV  F+ M K G   ++  ++ +++ LCK
Sbjct: 35  LGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCK 94

Query: 179 SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
             +   A ++   M+++   P+   YS +++   KD  +  A E   EMV+ G +P++VT
Sbjct: 95  MGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVT 154

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++   C  GR +EA  + K M      P +  +++LV     E  I +A   F  M 
Sbjct: 155 YSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMI 214

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G+  +V  YNAL+  +C  ++     ++   M  KG AP+ R+ NI++ G    G  D
Sbjct: 215 EKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRID 274

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA  +   M  K    D  TY+ ++K FCQ G  + A K+ + M+    +P + T+S+++
Sbjct: 275 EAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVL 334

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +GLC +G + ++  LL+ M E  I P+
Sbjct: 335 DGLCKQGHLDEAFELLKAMQESKIEPN 361



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 145/273 (53%), Gaps = 2/273 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T+S LL G      +  A ++F EMV  G  PD++TY  +++ LCK G    A+ +
Sbjct: 45  PNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQL 104

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +K M+   C+P   +YS ++ +   +  I +A++   EM   GI  +V  Y++++  FC 
Sbjct: 105 LKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCN 164

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             +      + K M  + V P++ T NI+++GL   G   EA  VF  MI K  E + +T
Sbjct: 165 LGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNT 224

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  ++  +C   ++++A K++  M  K   PS+ ++++LI G C  G + ++  LL +M 
Sbjct: 225 YNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMS 284

Query: 437 EKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            K + P   T+  L K   ++GR +D  K L+E
Sbjct: 285 HKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEE 317



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 158/326 (48%), Gaps = 9/326 (2%)

Query: 152 YTFNV---MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           + F+V   M K G+  N   F+ LL+ L     +  A ++FD M K  + PD  TYS ++
Sbjct: 30  FAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTII 89

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K  +   A ++ ++M + GC P++V Y  ++D LCK   + EA+  +  M +    
Sbjct: 90  NGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGIS 149

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS ++H +    R  +A   F +M +  ++ D   +N L+    K         V
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCV 209

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + M  KGV PN  T N +++G   + + DEA ++F  M+ K C     +Y ++IK  C+
Sbjct: 210 FETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCK 269

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +++A  +   M  K   P   T+S L+ G C  G   D+  LLE+M   G+ P   T
Sbjct: 270 SGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMT 329

Query: 447 FGKLRKLLIKEGRED----VLKFLQE 468
           +  +   L K+G  D    +LK +QE
Sbjct: 330 YSIVLDGLCKQGHLDEAFELLKAMQE 355



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 165/329 (50%), Gaps = 12/329 (3%)

Query: 61  VSPEIV--EDVLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK---IRQY 113
           +SP +V    +L  F N G    A   FK    ++N       ++ +++ L+K   I + 
Sbjct: 148 ISPNVVTYSSILHGFCNLGRSNEATSLFKQM-VERNVMPDTVTFNILVDGLSKEGMILEA 206

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
           Q +++ +  +      NV T+  +M  Y    +++EA   FN+M + G   ++ ++N L+
Sbjct: 207 QCVFETM--IEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264

Query: 174 SALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
              CKS  + +A+ +   M  +   PD+ TYS L++G+ +D     A+++  EM   G  
Sbjct: 265 KGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLL 324

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD++TY I++D LCK G +DEA  ++K+M  +   P  FIY++L+       ++E A + 
Sbjct: 325 PDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAREL 384

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F  +   GI  DV  Y  +I    K         + +DM   G  PNS T N+I+ G + 
Sbjct: 385 FSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLR 444

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMM 380
            G+T  A R+   M+ +   AD+ T+ M+
Sbjct: 445 NGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 233 PDIVTYGIMVDVLCKAGR--VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           PD+ T  I+++  C +       A  ++ +M     +P    +S L++    + +I DAV
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F EM K G   DV  Y+ +I   CK        ++LK M  KG  PN    + I++ L
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                  EA      M+ +    +  TY+ ++  FC  G   +A  ++K M  +  +P  
Sbjct: 128 CKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDT 187

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            TF++L++GL  +G++ ++  + E MIEKG+ P+  T+  L
Sbjct: 188 VTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNAL 228


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 170/341 (49%), Gaps = 6/341 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  K ++A    + M   GVT +   FN ++  LCK+    +A  + 
Sbjct: 9   DVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL 68

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R   P   TY+ L+ G  K  N+ RA+ +  E V +G  PD+VTY I+ D LCK 
Sbjct: 69  AVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKR 128

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA  +VK M    C P    Y+ L+      ++ E A +    +  +G + DV  Y
Sbjct: 129 GRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTY 188

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
             ++   CK  +     ++++ M  +G  P+  T   ++ GL   G  DEA+ +F+ M+ 
Sbjct: 189 TIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 248

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K C ADA  Y  ++  +C+    ++A KV   +   R  P +  ++ L++G C +G + +
Sbjct: 249 KDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI---RGTPYIDVYNALMDGYCKEGRLDE 305

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQ 467
              + EDM  +G  P+ +T+  +   L K G+ D    FL+
Sbjct: 306 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLE 346



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 200/458 (43%), Gaps = 71/458 (15%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++N   S   Y+++I  L K +       LV+   +   + +V T+ I+     +  +++
Sbjct: 73  ERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRID 132

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA      M   G T NL  +N L+  LCK+    KA E+ + +    F+PD  TY+I++
Sbjct: 133 EAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIV 192

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC- 266
           +G  K+  L +A ++   M+  GC P ++TY  +++ LC+ GRVDEA  I K M S  C 
Sbjct: 193 DGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCT 252

Query: 267 -----------------------------RPTSFI--YSVLVHTYGVENRIEDAVDTFLE 295
                                        R T +I  Y+ L+  Y  E R+++  + F +
Sbjct: 253 ADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFED 312

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G + ++  YN ++   CK  K    +  L+ M+S G  P+  + NII++GL    +
Sbjct: 313 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 372

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM-------------- 400
             EA +V  +MI+     DA TY  ++  FC+    + A  + K M              
Sbjct: 373 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 432

Query: 401 ---------KLKRFIPSMH-------------TFSVLINGLCDKGIVSDSCVLLEDMIEK 438
                    +L      MH             T++ +I+ LC +G +  + +L++ M   
Sbjct: 433 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 492

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           G+  +  T+      L KEGR D    L  +M+ L  E
Sbjct: 493 GVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDE 530



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 130/245 (53%), Gaps = 1/245 (0%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           +  PD  TY+IL++G  K     +A E+  EMVD G  PD VT+  ++D LCKAG+ + A
Sbjct: 5   KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 64

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++  M    CRP+   Y+ L+     +  ++ A     E   +G + DV  Y+ L   
Sbjct: 65  HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADG 124

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EAD 373
            CK  +    + ++K+M+  G  PN  T N +++GL    +T++AY +   ++      D
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT+++   C+ G L+KA K+ + M  +   PS+ T++ L+ GLC  G V ++  + +
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 244

Query: 434 DMIEK 438
           +M+ K
Sbjct: 245 EMVSK 249



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 183/387 (47%), Gaps = 12/387 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +++ Y+ +++ L K  +    +  + +M +   + +V ++ II+    +  K +EA    
Sbjct: 321 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 380

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + M + G+  +   +N L++  CK +    A  I   M K    PD+ TY+ L+ G  + 
Sbjct: 381 DQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQT 440

Query: 214 PNLPRAREIFREMVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             L  A E+  EM+  GC      TY  ++D LCK G + +AL ++  M        +  
Sbjct: 441 NRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVT 500

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++ +     E R+++A     EM+    L D   Y  +I   CKA +     ++ ++M 
Sbjct: 501 YNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLDRASKLAREMV 557

Query: 333 S-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
           + KG+   S T N++++        DEA  +   M++  C     TY M+I   C+  ++
Sbjct: 558 AVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKV 617

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +KA++++  M ++  + S  +++VLI GLC +G   ++  +LE+M             KL
Sbjct: 618 DKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKL 677

Query: 451 RKLLIKEGR----EDVLKFLQEKMNLL 473
              L  +GR     ++L+ +  KM+ L
Sbjct: 678 YLALRGQGRGEEAAELLRRMTTKMDSL 704



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 36/230 (15%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F Y++L+      ++ + A +   EM   G+  D   +N+++   CKA KF+  + +
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 328 LKDMN-----------------------------------SKGVAPNSRTCNIILNGLIG 352
           L  M                                    S G  P+  T +I+ +GL  
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           RG  DEA+ + + M    C  +  TY  +I   C+  + EKA+++ + +    F+P + T
Sbjct: 128 RGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVT 187

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           ++++++GLC +G +  +  ++E M+++G  PS  T+  L + L + GR D
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD 237



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           MN + VAP+  T NI+++GL    +TD+A  +   M+ +    D  T+  ++   C+ G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            E+A  +   M  +   PS  T++ LI+GLC +  V  +  L+++ +  G  P   T+  
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 450 LRKLLIKEGRED 461
           L   L K GR D
Sbjct: 121 LADGLCKRGRID 132


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 210/437 (48%), Gaps = 4/437 (0%)

Query: 37  SISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           S+ +I+ + P    ++  L +  +  +PE+V  VL + ++    A  +F+WAE+  +  H
Sbjct: 70  SVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNN-AVNYFRWAERLTDRAH 128

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTF 154
              AY+S++  +A+ R++  +  ++  M           CI I+  + + +K+ EA    
Sbjct: 129 CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFI 188

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
             M+K       +A+  L+ AL  S++      +F  M++  +  +   ++ L+  + ++
Sbjct: 189 QTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFARE 248

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  EM      PD+V Y + +D   KAG+VD A      M +         Y
Sbjct: 249 GRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTY 308

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++      +R+ +AV+ F  M++N  +     YN +I  +  A KF++ Y +L+    
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRR 368

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           KG  P+  + N IL+ L  +G+ DEA + F  M K    +  TY +MI M C+ G+LE A
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             V   MK     P++ T +++++ LC    + D+C + E +  K  RP   T+  L + 
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 454 LIKEGREDVLKFLQEKM 470
           L + GR D    L E+M
Sbjct: 489 LGRHGRVDEAYKLYEQM 505



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+IE L +  +    + L   M    ++ N   +  ++R + +  + E+    +N M 
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
           + G + +L   N  +  + K+  + K + +F  +K+  FIPD+++Y+IL+ G  K     
Sbjct: 542 RLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH 601

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+F  M + GC  D   Y  ++D  CK+G+V++A  +++ M +    PT   Y  ++
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVI 661

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E +  GI  +V +Y++LI  F K  +    Y +++++  KG+ 
Sbjct: 662 DGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 721

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E  EA   F+ M  L C  +  TY+++I   C+  +  KAF  
Sbjct: 722 PNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           W+ M+ + F P++ T++ +I+GL   G + ++  L E   EKG
Sbjct: 782 WQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 190/390 (48%), Gaps = 9/390 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI  L K  +     +L   M + K++     +  ++  Y    K E+A       +
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQR 367

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           + G   ++ ++N +LS L +   V +A + F+ MK   IP+  TY+I+++   K   L  
Sbjct: 368 RKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLET 427

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  +   M D G  P+++T  IMVD LCKA R+D+A  I + +D   CRP +  Y  L+ 
Sbjct: 428 ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIE 487

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G   R+++A   + +M     + +  +Y +LI  F K  + ++ +++  +M   G +P
Sbjct: 488 GLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVW 397
           +    N  ++ +   GE ++   +F+ +  L    DA +YT++I    + G   +A++++
Sbjct: 548 DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELF 607

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             MK +  +     ++ +I+G C  G V+ +  LLE+M  KG  P+  T+G +   L K 
Sbjct: 608 YTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKI 667

Query: 458 GREDVLKFLQE-------KMNLLVKEPLCD 480
            R D    L E       ++N+++   L D
Sbjct: 668 DRLDEAYMLFEEAKSKGIELNVVIYSSLID 697



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 187/375 (49%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       +++  + L+   R K  + +V ++  I+    R  +V+EA+  F  M
Sbjct: 342 AYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM 401

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +K  +  NL+ +N ++  LCK+  +  A  + D MKD    P+  T +I+++   K   L
Sbjct: 402 KKDAIP-NLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRL 460

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF  +    C PD VTY  +++ L + GRVDEA  + + M      P + +Y+ L
Sbjct: 461 DDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSL 520

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R ED    + EM + G   D+ + N  +    KA + +    + +++ + G 
Sbjct: 521 IRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF 580

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P++R+  I+++GL+  G   EAY +F  M +  C  D   Y  +I  FC+ G++ KA++
Sbjct: 581 IPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 640

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK K   P++ T+  +I+GL     + ++ +L E+   KGI  +   +  L     
Sbjct: 641 LLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFG 700

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E++
Sbjct: 701 KVGRIDEAYLIMEEL 715



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 3/300 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
            R+Y  +I  L K       ++L   M+ +  +L+   +  ++  + +  KV +A     
Sbjct: 584 ARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 643

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M+  G    +  +  ++  L K   + +A  +F+  K + I  +   YS L++G+GK  
Sbjct: 644 EMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVG 703

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I  E++  G  P++ T+  ++D L KA  + EAL   +SM    C P    YS
Sbjct: 704 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYS 763

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+H      +   A   + EM+K G   +V  Y  +I    KA        + +    K
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G   +S   N I+ GL       +AYR+F    +K C     T  +++    +   +E+A
Sbjct: 824 GGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQA 883


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 182/355 (51%), Gaps = 3/355 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  + K     +  DL   M  + +  +V  + I++    +   +++A+  FN M
Sbjct: 211 TYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM 270

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G+  ++ A++ ++  LC         ++   M  R  IP+  T+S L++ + K+  L
Sbjct: 271 EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKL 330

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+E++ EMV  G  PD +TY  ++D  CK  R+ EA  ++  M S  C P    YS+L
Sbjct: 331 LEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSIL 390

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +++Y    R+++ +  F E+   G++AD   YN L+  FC++ K      + ++M S+GV
Sbjct: 391 INSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T  I+L+GL   GE  +A  +F +M K         Y ++I   C   +++ A+ 
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++  + +K   P + T++V+I GLC KG +S++ +L   M E G  PS  T+  L
Sbjct: 511 LFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNIL 565



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 186/378 (49%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  +  ++A+ ++Y ++      M    +  N+ T  I++  + R +K+  A    
Sbjct: 68  SLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVV 127

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
               K+G   N   F+ L++  C    V +A  + D M + ++ P+  T + L+ G    
Sbjct: 128 GRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLK 187

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   MV  GC  + +TYG +++ +CK+G    AL + + M+    + +   Y
Sbjct: 188 GRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQY 247

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+++ +   +  ++DA+  F EME  GI ADV  Y+++IG  C   ++ +  ++L++M  
Sbjct: 248 SIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIG 307

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  +  G+  EA  ++  M+ +    D  TY+ +I  FC+   L +
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGE 367

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M  K   P++ T+S+LIN  C    V +   L  ++  KG+     T+  L +
Sbjct: 368 ANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQ 427

Query: 453 LLIKEGREDVLKFLQEKM 470
              + G+ +V K L ++M
Sbjct: 428 GFCQSGKLNVAKELFQEM 445



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 39/299 (13%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I+   K  +      +++ M +K    N+ T+ I++  Y + ++V+  +  F  +
Sbjct: 351 TYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI 410

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNL 216
              G+  +   +N L+   C+S  +  A+E+F  M  R +P S  TY ILL+G   +  L
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A EIF +M  +     I  Y I++  +C A +VD+A  +                   
Sbjct: 471 QKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSL------------------- 511

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                           F  +   G+  DV  YN +IG  CK         + + M   G 
Sbjct: 512 ----------------FCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 555

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
           AP+  T NI++   +G      +  +   M ++   ADA T  M++ M    G L+K F
Sbjct: 556 APSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVML-SDGRLDKTF 613



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 2/258 (0%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           D  +  A ++F  M+ +   P ++ +  +   + +    D  LG  K MD        + 
Sbjct: 47  DIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYT 106

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
            +++++ +  + ++  A        K G   +   ++ LI  FC   +      ++  M 
Sbjct: 107 MNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMV 166

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
                PN  T N ++NGL  +G   EA  +  RM+K  CEA+  TY  ++   C+ G   
Sbjct: 167 EMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTA 226

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +++ M+ +    S+  +S++I+ LC  G + D+  L  +M  KGI+     +  + 
Sbjct: 227 LALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSII 286

Query: 452 KLLIKEGR-EDVLKFLQE 468
             L  +GR +D  K L+E
Sbjct: 287 GGLCNDGRWDDGAKMLRE 304



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 100/193 (51%), Gaps = 5/193 (2%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ ++ +A+D F  M ++  L  +  ++ L  A  +  ++  V    K+M+  G+  N  
Sbjct: 46  VDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMY 105

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T NI++N    + +   A+ V  R +K   E +  T++ +I  FC  G + +A  +   M
Sbjct: 106 TMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRM 165

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
              ++ P++ T + LINGLC KG V+++ VL++ M++ G   +  T+G +   + K G  
Sbjct: 166 VEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNT 225

Query: 461 ----DVLKFLQEK 469
               D+ + ++E+
Sbjct: 226 ALALDLFRKMEER 238


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 198/371 (53%), Gaps = 4/371 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV- 151
           E S+  Y+S++ +  K  + +   +L   M  K    +V T+  I+    +  KV EA+ 
Sbjct: 75  EPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALE 134

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGW 210
             F+ M + G + N  A+N L++ LCK +N+ +A ++ + M  + ++PD+ TY+ +L G 
Sbjct: 135 MLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGL 194

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +   +  A++ F  M   G +PD+V Y  ++D L K G+ DEA+ + K + +    P +
Sbjct: 195 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDT 254

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ ++     ++ +++A + F +M  +G   + A Y+ ++   C+A K  + ++VL++
Sbjct: 255 VTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEE 314

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M+  G  P+  T NI+L+GL      D+A+ +F  M+   C  D  +Y++++   C+  +
Sbjct: 315 MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 374

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +  A  ++  M  ++ +P + TF++L++GLC  G + ++  LL+ M   G  P    +  
Sbjct: 375 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNT 434

Query: 450 LRKLLIKEGRE 460
           L   L K+GR 
Sbjct: 435 LMNGLRKQGRH 445



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 164/312 (52%), Gaps = 3/312 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  YA+  +V+EA   +  M   G+  ++  +N LL+A CK   +++A E+F  M 
Sbjct: 46  YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMA 105

Query: 194 DR-FIPDSKTYSILLEGWGKDPNLPRARE-IFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++ F PD  TYS ++ G  K   +  A E +F +M++ GC+ + V Y  +++ LCK   +
Sbjct: 106 EKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENI 165

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           + A  +++ M S    P +  Y+ ++       ++ +A   F  M   G   DV  YN L
Sbjct: 166 ERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGL 225

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           + A  K  K     ++ KD+ +KG  P++ T N IL GL  +   DEA  +F++M+   C
Sbjct: 226 LDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGC 285

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +  TY++++   C+  +++ A KV + M     +P + T+++L++GLC   +V  +  
Sbjct: 286 APNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 345

Query: 431 LLEDMIEKGIRP 442
           L   M++ G  P
Sbjct: 346 LFSTMVDNGCAP 357



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 176/344 (51%), Gaps = 3/344 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-I 188
           ++ T+  ++  + +  K++EA+  F  M + G   ++  ++ ++S LCK+  V +A E +
Sbjct: 77  SIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEML 136

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M +R    ++  Y+ L+ G  KD N+ RA ++  EM   G  PD +TY  ++  LC+
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G+V EA     SM S    P    Y+ L+     E + ++A+  F ++   G + D   
Sbjct: 197 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVT 256

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN+++    + +       + K M + G APN  T +I+L+G     + D+A++V   M 
Sbjct: 257 YNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMS 316

Query: 368 KLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K+    D  TY +++   C+   ++KA +++  M      P + ++SV++NGLC    V 
Sbjct: 317 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 376

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           D+ VL + MIE+ + P   TF  L   L K G+ D  K L ++M
Sbjct: 377 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 160/312 (51%), Gaps = 5/312 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
           AY+++I  L K    +  + L+  M +K  +  N+ T+  I+    R+ KV EA   F+ 
Sbjct: 151 AYNALINGLCKDENIERAYKLLEEMASKGYVPDNI-TYNTILSGLCRMGKVSEAKQFFDS 209

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M   G + ++ A+NGLL AL K     +A ++F D +   ++PD+ TY+ +L G  +  N
Sbjct: 210 MPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSN 269

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A E+F++MV +GC P+  TY I++   C+A +VD+A  +++ M      P    Y++
Sbjct: 270 MDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNI 329

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+      N ++ A + F  M  NG   D+  Y+ ++   CK NK  +   +   M  + 
Sbjct: 330 LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK 389

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           + P+  T NI+++GL   G+ DEA  +  +M    C  D   Y  ++    + G   +A 
Sbjct: 390 LVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQAD 449

Query: 395 KVWKYMKLKRFI 406
           ++ + MK K F+
Sbjct: 450 RLTQAMKEKGFL 461



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 2/233 (0%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C+P+  T+ +++   CK G++ +   + + M      P    Y++L+  Y  + R+++A 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             + EM   G+   +  YN+L+ AFCK  K K    + K M  KG  P+  T + I++GL
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 351 IGRGETDEAYR-VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              G+  EA   +F +MI + C A+   Y  +I   C+   +E+A+K+ + M  K ++P 
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             T++ +++GLC  G VS++    + M  +G  P    +  L   L KEG+ D
Sbjct: 184 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTD 236



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 37/287 (12%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T+ ++L+ + K   L    ++F +M+D G +PD + Y I++D   K GRVDEA  +
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM---------- 307
            + M S    P+ + Y+ L++ +  E ++++A++ F  M + G   DV            
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 308 --------------------------YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                                     YNALI   CK    +  Y++L++M SKG  P++ 
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N IL+GL   G+  EA + F  M  +    D   Y  ++    + G+ ++A K++K +
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV 245

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
             K ++P   T++ ++ GL  K  + ++  + + M+  G  P+G T+
Sbjct: 246 IAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 1/176 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++  + R +KV++A      M K G   ++  +N LL  LCK+  V KA E+F
Sbjct: 288 NGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELF 347

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M D    PD  +YS++L G  K   +  AR +F  M++    PD+VT+ I++D LCKA
Sbjct: 348 STMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKA 407

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           G++DEA  ++  M  + C P    Y+ L++    + R   A      M++ G L+D
Sbjct: 408 GKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P+ +TF V++   C +G + D   L E M++ GI P G  +  L     K+GR D    L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 467 QEKMNLLVKEP 477
            E+M  +  EP
Sbjct: 66  YEEMVSVGLEP 76


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 202/417 (48%), Gaps = 46/417 (11%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHS 102
           S   +V   A + S +R++  + + +L +  +    A  FF WA+ +   Y H+  A + 
Sbjct: 68  SVEDLVRTLAAECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACNR 127

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           M++ L K+RQ   MWDL++ M  + ++ V+T    +R+ A  ++  +A+  F+ ++  G+
Sbjct: 128 MVDLLGKMRQIDRMWDLLSEMHCRGLVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLGL 187

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW------------ 210
            +N    N LL ALCK + V  A+E+F  +     PD+ T++I + GW            
Sbjct: 188 ERNTETMNVLLDALCKERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAMWT 247

Query: 211 -------GKDP----------------NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
                  G  P                N  R  EI   M   GC+P+++TY +++  L K
Sbjct: 248 IEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMTSLTK 307

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVA 306
             R +EAL +   M S+ C+P +  Y+ L++  G    + +A   F +EM +N +  +VA
Sbjct: 308 CERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNVVPRNVA 367

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG-RGETDEAYRVF-- 363
            YN +I   C+  +  +   VLK+M ++   P+ +T   +L  L G RG+T   + +   
Sbjct: 368 TYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTGAIHHLLSE 427

Query: 364 ---RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
              R  + L   D DTYT++I   C+ GE + A++++  M     +P   T  +L++
Sbjct: 428 LRDRNGLGL---DLDTYTLLIHGLCRVGETDWAYQLYDEMVGSEIVPRPKTCELLLS 481


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 204/384 (53%), Gaps = 4/384 (1%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N +  V  Y  +I+SL K        D+ + M    +L +V  +  +M    R  +++EA
Sbjct: 141 NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 200

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +  F  M+  G++ ++  +N L+  L ++   ++     + M DR F PD+ T++IL++G
Sbjct: 201 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 260

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K+  +  A++I   M   G  PDI+TY  +++ LC  G++++A  + +S+     +  
Sbjct: 261 LCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLN 320

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            F Y++L++ Y  + +I++A   F EM   G+      YN LIGA C++ + +   ++  
Sbjct: 321 VFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFV 380

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
           +M + G      T  ++L+GL   G  +EA  +F+ + K   + + + +++++   C+ G
Sbjct: 381 EMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAG 440

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +LE+A+K +  +      P    +++LINGLC+KG++S++  LL  M EKG  P   TF 
Sbjct: 441 KLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFN 500

Query: 449 KLRKLLIKEGR-EDVLKFLQEKMN 471
            + + L+KE    + ++ L+E  N
Sbjct: 501 VIIQNLLKENEIHEAIQLLEEMRN 524



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 3/303 (0%)

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           K G   +      L+  +     +  A ++FD M ++    D+KTY IL+ G  K     
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++  +M    C  D+ TYG+++D LCK G   EAL +   M      P   +YS L+
Sbjct: 130 LAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  R+++A++ F EME  GI ADV  YN+LI    +A  +K V   L  M  +G +
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P++ T  I+++GL   G+  EA ++   M  K  E D  TY  ++   C  G+LE A K+
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ +  +    ++ ++++LING C    + ++  L E+M  KG++PS  T+  L   L +
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQ 368

Query: 457 EGR 459
            GR
Sbjct: 369 SGR 371



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 140/261 (53%), Gaps = 4/261 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
            +  E  +  Y++++  L  + Q +    L  ++  + + LNV ++ I++  Y + QK++
Sbjct: 279 HKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKID 338

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYSIL 206
           EA   F  M+  G+  +   +N L+ ALC+S  VR AQ++F  M+   +F+  S TY +L
Sbjct: 339 EAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS-TYCVL 397

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L+G  K+ +L  A ++F+ +  T   P+I  + I++D +C+AG+++EA      +     
Sbjct: 398 LDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL 457

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  Y++L++    +  + +AV    +ME+ G L D   +N +I    K N+     +
Sbjct: 458 EPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQ 517

Query: 327 VLKDMNSKGVAPNSRTCNIIL 347
           +L++M ++  +P+    +++L
Sbjct: 518 LLEEMRNRNFSPDEAVTSMLL 538



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 6/214 (2%)

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +   + LV    +EN I DAV  F EM + G+  D   Y  LI   CKA K     +
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIK 133

Query: 327 VLKDM--NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           + + M  N KG   +  T  +I++ L   G T EA  +F  MI      D   Y+ ++  
Sbjct: 134 LHEKMKGNCKG---DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 190

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            C+ G L++A + +K M+ +     ++T++ LI+GL   G+  +    L  M+++G  P 
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 250

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             TF  L   L KEG+    + + E M+   KEP
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKGKEP 284


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 201/407 (49%), Gaps = 6/407 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFK-WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +S + V  + +  ++A  LA+  F+  +  +  ++HSV   +++++  A+ ++++   +L
Sbjct: 23  ISTDAVVKIFQCLKDA-DLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNL 81

Query: 120 V-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALC 177
           + N + T  + +VET+ +++  Y   ++ EEA      M++ YGV  +L   N +L  LC
Sbjct: 82  LKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLC 141

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           KS  V  A + F+         D  TY+ +++   K+  +  A  +  ++   GC P I 
Sbjct: 142 KSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIA 201

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  +++ LCK GR++EA+ +++ +    C P    Y+ L+   G E R  +A   F EM
Sbjct: 202 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 261

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              G++ D   Y ALI    +A K      V K M S+G  P+  T + +++GL   G  
Sbjct: 262 ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 321

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             A R+F+ M  +    +   Y+ +I   C+  +++ A ++   MK     P   T+++L
Sbjct: 322 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNIL 381

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           I+GLC  G V  +    ++M+E G +P   T+  L     K G  D 
Sbjct: 382 IDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDA 428



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 189/420 (45%), Gaps = 39/420 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIM 138
           AF   +  E+      S++ ++ ++  L K  +     D      T    +++ T+  I+
Sbjct: 113 AFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIV 172

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
              A+ +K+++AV     +   G T  +A +N LL+ LCK   + +A ++   + D    
Sbjct: 173 DWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 232

Query: 198 PDSKTYSILLEGWGKDP-----------------------------------NLPRAREI 222
           PD  TY+ L++G GK+                                     +P+A  +
Sbjct: 233 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSV 292

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           ++ M   GC PD+VT   M+D LCKAGR+  A+ I KSM++    P   +YS L+H    
Sbjct: 293 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 352

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             +++ A++   +M+K     D   YN LI   CK+   +       +M   G  P+  T
Sbjct: 353 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 412

Query: 343 CNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            NI+++G    G TD A  VF  M    C  +  TY  +I   C+  +L KA   +++MK
Sbjct: 413 YNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK 472

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +   P    +S L++GLC  G +   C+L ++M   G+  S +T  +L   L K  R D
Sbjct: 473 ERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS-QTRTRLIFHLCKANRVD 531



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 150/326 (46%), Gaps = 5/326 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEAVYTF 154
           V  Y S+I+ L K ++    + L   M   R L ++T C   ++R   +  K+ +A   +
Sbjct: 235 VVTYTSLIDGLGKEKRSFEAYKLFKEMAL-RGLVLDTVCYTALIRGLLQAGKIPQASSVY 293

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G   ++   + ++  LCK+  +  A  IF  M+ R   P+   YS L+ G  K 
Sbjct: 294 KTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 353

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A E+  +M    C PD +TY I++D LCK+G V+ A      M    C+P  + Y
Sbjct: 354 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 413

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++LV  +      + A   F +M  +    +V  Y  LI   CK  +        + M  
Sbjct: 414 NILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKE 473

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           +G  P+S   + +++GL   G+ +    +F  M +   A++ T T +I   C+   +++A
Sbjct: 474 RGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEA 533

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGL 419
             ++  ++ K  +P  + ++ +I+ L
Sbjct: 534 VSLFNAIR-KEGMPHPYAYNSIISTL 558


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 216/436 (49%), Gaps = 21/436 (4%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           NS   S  A   AK+I+ ++ S P    +  L    I +S   V   L   ++    A  
Sbjct: 40  NSRPRSRNASKTAKTIANLINSKP--FSNGLLSSLLITISKTTVLRTLRLIKDPSK-ALR 96

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVET--FCIIM 138
           FFKW + Q+ + H+  +Y  M+E L + R   +  + + ++   +K  + +E   F  ++
Sbjct: 97  FFKWTQ-QKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLI 155

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-- 196
           R YA     +E++  F  M+   V+ ++  FN L+S L K      A+E++D M   +  
Sbjct: 156 RSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGV 215

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ TY++L+ G+ K+  +      FREM    C+ D+VTY  +VD LC+AG+V  A  
Sbjct: 216 SPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARN 275

Query: 257 IVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           +V  M        P    Y+ L+  Y ++  +E+A+    EM   G+  ++  YN L+  
Sbjct: 276 LVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKG 335

Query: 315 FCKANKFKNVYRVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
            C+A+K   +  VL+ M S  G +P++ T N I++     G  DEA +VF  M K    A
Sbjct: 336 LCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPA 395

Query: 373 DADTYTMMIKMFCQGGELEKAFKVW-----KYMKLKRF--IPSMHTFSVLINGLCDKGIV 425
           D+ +Y+ +I+  CQ G+ + A +++     K + L +F   P   +++ +   LC+ G  
Sbjct: 396 DSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKT 455

Query: 426 SDSCVLLEDMIEKGIR 441
             +  ++  ++++G +
Sbjct: 456 KKAERVIRQLMKRGTQ 471



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 165/337 (48%), Gaps = 11/337 (3%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++R + +   V+E    F  M+ +    ++  +N L+  LC++  VR A+ + + M
Sbjct: 221 TYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGM 280

Query: 193 KDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             +     P+  TY+ L+ G+     +  A  +  EM   G  P+++TY  +V  LC+A 
Sbjct: 281 GKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAH 340

Query: 250 RVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           ++D+   +++ M S     P +F ++ ++H +     +++A+  F  M+K  I AD A Y
Sbjct: 341 KLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASY 400

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSK-------GVAPNSRTCNIILNGLIGRGETDEAYR 361
           + LI + C+   +    ++  ++  K       G  P + + N I   L   G+T +A R
Sbjct: 401 STLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAER 460

Query: 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           V R+++K    D  +YT +I   C+ G  E  +++  +M  + F+P +  +  LI+G   
Sbjct: 461 VIRQLMKRGTQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQ 520

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           K     +   LE M++   +P   T+  +   L+++G
Sbjct: 521 KDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKG 557



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 15/269 (5%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----LGIVKSMDSTVCR 267
           KDP+  +A   F+     G +    +Y IM+++L +   ++ A      I K    TV  
Sbjct: 89  KDPS--KALRFFKWTQQKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKL 146

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK---ANKFKNV 324
              F ++ L+ +Y      ++++  F  M+   +   V  +N+L+    K    N  K V
Sbjct: 147 EDRF-FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEV 205

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           Y  +  + + GV+P++ T N+++ G       DE +R FR M    C+AD  TY  ++  
Sbjct: 206 YDEM--LGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDG 263

Query: 384 FCQGGELEKAFKVWKYM--KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            C+ G++  A  +   M  K +   P++ T++ LI G C K  V ++ V+LE+M  +G++
Sbjct: 264 LCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLK 323

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           P+  T+  L K L +  + D +K + E+M
Sbjct: 324 PNMITYNTLVKGLCEAHKLDKMKDVLERM 352



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 190/472 (40%), Gaps = 84/472 (17%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCI 136
            F FF+  E   N +  V  Y+++++ L +  + +I  +LVN M  K      NV T+  
Sbjct: 238 GFRFFREME-SFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTT 296

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK---------------- 180
           ++R Y   Q+VEEA+     M   G+  N+  +N L+  LC++                 
Sbjct: 297 LIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDG 356

Query: 181 --------------------NVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRA 219
                               N+ +A ++F+ MK   IP DS +YS L+    +  +   A
Sbjct: 357 GFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMA 416

Query: 220 REIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRPTSF 271
            ++F E+ +        G  P   +Y  + + LC+ G+  +A  +++  M      P S 
Sbjct: 417 EQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQS- 475

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++  +  E   E   +  + M +   L D+ +Y+ LI  F + +K       L+ M
Sbjct: 476 -YTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKM 534

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
                 P + T + +L  L+ +G   E+  V   M+ K    + +  T  +++     + 
Sbjct: 535 LKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIVMMLEKNVRQNINLSTESLQLLFGREQH 594

Query: 391 EKAFKVWK-------YMKL-----------------KRFIPSMHTFSVLINGLCDKGI-- 424
           E+AF++         Y+K+                 K  + S+     +   LC+  I  
Sbjct: 595 ERAFEIINLLYKNGYYVKIEEVAQFLLKRGKLSEACKLLLFSLENHQNVDIDLCNATILN 654

Query: 425 ------VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
                 VS++  L  +++E G+         L   L + G+ +   F+ +++
Sbjct: 655 LCKINKVSEAFSLCYELVENGLHQELTCLDDLIAALEEGGKREEAAFISKRL 706


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 203/406 (50%), Gaps = 6/406 (1%)

Query: 69  VLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           V+  F NAG L        E K   +      +  +I ++A         D + +M    
Sbjct: 118 VISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDP 177

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             NV T+  ++  +AR +K+EEA+     M++ G   NL  +N L+ ALCK   V  AQ+
Sbjct: 178 --NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQD 235

Query: 188 IFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M +  F P+  T++ L++G+ K  N+  AR++   MV  G  P++VTY  ++D LC
Sbjct: 236 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 295

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K+ +  EA  +++ M +    P +F YS L+H     ++IE+A      M  +G   DV 
Sbjct: 296 KSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVV 355

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +Y+++I AFCK+ K     + L++M  +  +P+  T N +++GL   G+  EA  +  +M
Sbjct: 356 VYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQM 415

Query: 367 IKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
            +  +   D  TY+ +I   C+   L +A K+   M      P + T++ +I+GLC  G 
Sbjct: 416 QESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGR 475

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + ++  LL+ M   G  P+  T+  L   L K  + D  + + E+M
Sbjct: 476 LEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 521



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 191/446 (42%), Gaps = 57/446 (12%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSP-EIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           LD A    + M   P VV  TAL  +  R    E    +LE+ R  G             
Sbjct: 163 LDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGC------------ 210

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
                ++  Y+ ++++L K+       D+V  M       NV TF  ++  + +   V++
Sbjct: 211 ---PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 267

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A     +M   G+  N+  ++ L+  LCKS+   +A+E+ + MK R + PD+ TYS L+ 
Sbjct: 268 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIH 327

Query: 209 GWGKDPNLPRAREIFREMVDTGC-----------------------------------NP 233
           G  K   +  A ++ R M  +GC                                   +P
Sbjct: 328 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 387

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           D+VTY  ++D LCK G++ EA  I++ M +S    P    YS +++     + + +A   
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 447

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M K G   DV  Y  +I   CK  + +    +L+ M   G APN  T   +++GL  
Sbjct: 448 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 507

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPSM 409
             + DEA RV   M    C  +  TY  M+   C  G +++A ++ + MK  R    P  
Sbjct: 508 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 567

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDM 435
            T+  ++N L    +V ++  LLE M
Sbjct: 568 ATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 148/311 (47%), Gaps = 6/311 (1%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDC-MKDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G +    ++N LL  L + K  R+A ++F   +     PD  +Y+I++ G+    +L  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            E+  EM   G  PD  T+  ++  +  AG +D A+  ++SM    C P    Y+ L+  
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG---CDPNVVTYTALIAA 188

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           +    ++E+A+    EM + G   ++  YN L+ A CK +       V+K M   G APN
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 248

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T N +++G   RG  D+A ++   M+ K    +  TY+ +I   C+  +  +A +V +
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            MK +   P   T+S LI+GLC    + ++  +L  M   G  P    +  +     K G
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368

Query: 459 R-EDVLKFLQE 468
           +  +  K LQE
Sbjct: 369 KLLEAQKTLQE 379



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 8/214 (3%)

Query: 60  RVSPEIV--EDVLEKFRNAGTLAFCFFKWAEKQQNYE--HSVRAYHSMIESLAKIRQYQI 115
           R SP++V    V++     G +A       + Q++ +    V  Y ++I  L K      
Sbjct: 384 RKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVE 443

Query: 116 MWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
              L++ M +     +V T+  I+    +  ++EEA Y    M++ G   N+  +  L+S
Sbjct: 444 AQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 503

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVD--TGC 231
            LCK++ V +A+ + + M++   P +  TY+ ++ G      +  A+++ + M D    C
Sbjct: 504 GLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAEC 563

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +PD  TY  +V+ L  +  V EA  +++ M ST 
Sbjct: 564 SPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTT 597


>gi|356573388|ref|XP_003554843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Glycine max]
          Length = 491

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 203/416 (48%), Gaps = 9/416 (2%)

Query: 62  SPEIVEDVLEKF---RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           S  +VE++L +     + G  A  FF ++    ++  S  + +  +  L ++R +   W 
Sbjct: 50  STSLVENILGRLFASHSNGLKALEFFNYSLVHSHFPLSPASLNMTLHILTRMRYFDKAWV 109

Query: 119 LVN--AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK---YGVTQNLAAFNGLL 173
           L+   A     +L +++  I++ K A+ Q  E+ +  F  M+     G       FN LL
Sbjct: 110 LLRDIARTHPSLLTLKSMSIVLSKIAKFQSFEDTLDGFRRMEDEVFVGREFGTDEFNVLL 169

Query: 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
            A C  + +++A+ +F  +  RF P++K+ +ILL G+ +  N+      + EMV  G +P
Sbjct: 170 KAFCTQRQMKEARSVFAKLVPRFSPNTKSMNILLLGFKESGNVTSVELFYHEMVRRGFSP 229

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D VT+ I +D  CK G   +AL +++ M+     PT    + L+H  G+    + A   F
Sbjct: 230 DGVTFNIRIDAYCKKGCFGDALRLLEEMERRNVVPTIETITTLIHGAGLVRNKDKAWQLF 289

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            E+    ++AD   YNALI A  +    ++   ++ +M  K +  +S T + +  G +  
Sbjct: 290 KEIPSRNMVADAGAYNALITALVRTRDIESASSLMDEMVEKCIELDSVTYHTMFLGFMRS 349

Query: 354 GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
              +   +++++M +        T  M++K FCQ   L+ +  +WKY+  K + P  H  
Sbjct: 350 RGIEGVSKLYQKMTQSNFVPKTRTVVMLMKYFCQNYRLDLSVCLWKYLVEKGYCPHAHAL 409

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            +L+ GLC +G+V D+    + M+E+G   S  +F  L + L++    D LK L +
Sbjct: 410 DLLVTGLCARGLVHDAFECSKQMLERGRHMSNASFLMLERFLLQASDMDKLKELDQ 465


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 202/421 (47%), Gaps = 25/421 (5%)

Query: 65  IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
           +V +VL       T+    F W  +Q+ Y+HSV  Y+  +++LAK    Q+ ++    M+
Sbjct: 7   VVGEVLRHLGKISTIVR-LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ 65

Query: 125 TKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
            +     + T+ I++R   +  ++++A      +++ GV  N+  ++ ++   CK+  V 
Sbjct: 66  RRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVD 125

Query: 184 KAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            A EIF  M      +PD  T++ LL+G      +  A  +F  M   GC P++++Y  +
Sbjct: 126 DALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTL 185

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +D LCKAGR+DEA  + + M    C P    Y+  V      NR+ +A D   +M   G 
Sbjct: 186 LDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGS 245

Query: 302 LADVAMYNALIGAFCK---ANKFKN--------------VYRVLKDMNSKGVAPNSRTCN 344
            AD   ++ +IG  CK   A + +N                +  ++M S+   P++   N
Sbjct: 246 KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFN 305

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL----CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
            +++ +       +   +F+RM  +    C  + +TY +M+   C+  +L++A ++   M
Sbjct: 306 TLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEM 365

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P + T+S L++GLC  G +  +C LLE+M ++G+ P   T   +   L K G+ 
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKV 425

Query: 461 D 461
           D
Sbjct: 426 D 426



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 8/330 (2%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-- 194
           ++    R   ++EA  TF  M       +   FN L+ A+CKSK +     +F  MK   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 195 RFI--PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            F   P+ +TY+I+++   K   L  A+E+  EM + G +PD+VTY  +VD LCK G++D
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  +++ M      P SF  + +++      +++ A+     M+  G   D+  YN L+
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
              CKA +       L  M +    P+  +  II+  L   G+   A+ +F+ M+K    
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D   Y  ++    + G  + A ++ K    K   P      ++++GLC  G   D+C +
Sbjct: 512 PDTVLYHSLLDGLARNGLEDLALELLKTSLCK---PDFVMHKMVLDGLCKAGKAEDACEV 568

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +E M + G      T+  +   L K G+ D
Sbjct: 569 VERMADAGFPADAFTYISVVSGLRKLGKVD 598



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 166/390 (42%), Gaps = 57/390 (14%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V TF  +++     +++ EA   F  M K G   N+ +++ LL  LCK+  + +A  ++
Sbjct: 143 DVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLW 202

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK- 247
           + M ++  +PD   Y+  + G  K   +  A +  R+MV  G   D V +  ++ +LCK 
Sbjct: 203 EEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKK 262

Query: 248 ----------------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
                           +G +DEA    + M S    P++ +++ L+H      R+ D V 
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL 322

Query: 292 TFL--------------------------------------EMEKNGILADVAMYNALIG 313
            F                                       EM   G+  DV  Y+AL+ 
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEA 372
             CK  K      +L++M+ +GV P+S T   ILN L   G+ D A      M  +    
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  TY  ++   C+ G +++A      M   +  P + +++++I  LC  G  + +  + 
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           ++M+++G+ P    +  L   L + G ED+
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDL 532



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 143/310 (46%), Gaps = 37/310 (11%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQ 145
            +N+  S   ++++I ++ K ++      L   M++ +      N+ET+ I++    + +
Sbjct: 294 SRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAK 353

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYS 204
           +++EA    N M  YG++ ++  ++ L+  LCK   + +A ++ + M K+   PDS T +
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDA 413

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            +L    K   +  A      M   G  PD+VTY  ++D LCKAGR+DEA+  +  M + 
Sbjct: 414 SILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA 473

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF--------- 315
            C P  F Y++++       +   A   F EM K G+L D  +Y++L+            
Sbjct: 474 KCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLA 533

Query: 316 -----------------------CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
                                  CKA K ++   V++ M   G   ++ T   +++GL  
Sbjct: 534 LELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRK 593

Query: 353 RGETDEAYRV 362
            G+ D+A ++
Sbjct: 594 LGKVDKARQL 603



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 7/245 (2%)

Query: 92  NYEHS--VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           NY  S  V  Y ++++ L K+ +     DL+  M  + +  +  T   I+   ++  KV+
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
            A+     M+  G T +L  +N LL  LCK+  + +A      M   +  PD  +Y+I++
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               +      A  IF+EMV  G  PD V Y  ++D L + G  D AL ++K+   ++C+
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---SLCK 543

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P   ++ +++       + EDA +    M   G  AD   Y +++    K  K     ++
Sbjct: 544 PDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQL 603

Query: 328 LKDMN 332
           + D +
Sbjct: 604 VDDAS 608



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G    V  YN  + A  KAN  +  Y   + M  +G  P+  T +I+L GL   GE D
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 358 EAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIPSMHTF 412
           +A  +  ++    +KL   +  TY+++I   C+   ++ A +++K M      +P + TF
Sbjct: 91  KAKELLGQLRESGVKL---NVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTF 147

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + L+ GLC    +S++ VL E M + G  P+  ++  L   L K GR D    L E+M
Sbjct: 148 NSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEM 205


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/484 (23%), Positives = 227/484 (46%), Gaps = 61/484 (12%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           +GI +S  ++  +L ++++    A   F+WA    N++HS ++Y  M++ L +++    M
Sbjct: 80  NGIHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKM 139

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            +++  MR + ++ + T   +MR++   ++ ++AV  F+ +Q  G+ +N  + N LL  L
Sbjct: 140 REILEEMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTL 199

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-------------------------- 210
           CK K V +A+EI+  +K    P++ T++IL+ GW                          
Sbjct: 200 CKEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVI 259

Query: 211 ---------GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
                     ++ N  R  ++  EM    C+P++VTY  ++  L KA + +EAL +V+ M
Sbjct: 260 SYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERM 319

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMYNALIGAFCKANK 320
           ++  CRP +  ++ L++T G   RI+DA   F + M K  +  + + YN++I  FC   +
Sbjct: 320 NAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQ 379

Query: 321 FKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYR-VFRRMIKLCEA--DADT 376
            +  + +LK+M   G+  P+ +T + ++       E D     +   M+       D  T
Sbjct: 380 EERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDLST 439

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-------------- 422
           YT++I    +    + AF +++ M  +  +P   T  +L++ +  K              
Sbjct: 440 YTLLIHGLYRADRCKWAFDLFEEMADQDIVPRYKTCRLLLDEVKQKNMHLAVVKIEDRNT 499

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF----LQEKMNLLVK--- 475
           G++  S        ++G++     FG+ +K +I E + +  K     L    N  V+   
Sbjct: 500 GVMGISMKPENKKNDEGLKSGTIFFGRKKKQIIGENKPERKKMQTFRLHFDWNFTVRGDS 559

Query: 476 EPLC 479
            PLC
Sbjct: 560 SPLC 563


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 202/421 (47%), Gaps = 25/421 (5%)

Query: 65  IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
           +V +VL       T+    F W  +Q+ Y+HSV  Y+  +++LAK    Q+ ++    M+
Sbjct: 7   VVGEVLRHLGKISTIVR-LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ 65

Query: 125 TKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
            +     + T+ I++R   +  ++++A      +++ GV  N+  ++ ++   CK+  V 
Sbjct: 66  RRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVD 125

Query: 184 KAQEIFDCMK--DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            A EIF  M      +PD  T++ LL+G      +  A  +F  M   GC P++++Y  +
Sbjct: 126 DALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTL 185

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +D LCKAGR+DEA  + + M    C P    Y+  V      NR+ +A D   +M   G 
Sbjct: 186 LDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGS 245

Query: 302 LADVAMYNALIGAFCK---ANKFKN--------------VYRVLKDMNSKGVAPNSRTCN 344
            AD   ++ +IG  CK   A + +N                +  ++M S+   P++   N
Sbjct: 246 KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFN 305

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL----CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
            +++ +       +   +F+RM  +    C  + +TY +M+   C+  +L++A ++   M
Sbjct: 306 TLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEM 365

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P + T+S L++GLC  G +  +C LLE+M ++G+ P   T   +   L K G+ 
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKV 425

Query: 461 D 461
           D
Sbjct: 426 D 426



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 8/330 (2%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-- 194
           ++    R   ++EA  TF  M       +   FN L+ A+CKSK +     +F  MK   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 195 RFI--PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            F   P+ +TY+I+++   K   L  A+E+  EM + G +PD+VTY  +VD LCK G++D
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  +++ M      P SF  + +++      +++ A+     M+  G   D+  YN L+
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
              CKA +       L  M +    P+  +  II+  L   G+   A+ +F+ M+K    
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D   Y  ++    + G  + A ++ K    K   P      ++++GLC  G   D+C +
Sbjct: 512 PDTVLYHSLLDGLARNGLEDLALELLKTSLCK---PDFVMHKMVVDGLCKAGKAEDACEV 568

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +E M + G      T+  + + L K G+ D
Sbjct: 569 VERMADAGFPADAFTYINVVRGLRKLGKVD 598



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 166/390 (42%), Gaps = 57/390 (14%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V TF  +++     +++ EA   F  M K G   N+ +++ LL  LCK+  + +A  ++
Sbjct: 143 DVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLW 202

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK- 247
           + M ++  +PD   Y+  + G  K   +  A +  R+MV  G   D V +  ++ +LCK 
Sbjct: 203 EEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKK 262

Query: 248 ----------------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
                           +G +DEA    + M S    P++ +++ L+H      R+ D V 
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL 322

Query: 292 TFL--------------------------------------EMEKNGILADVAMYNALIG 313
            F                                       EM   G+  DV  Y+AL+ 
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEA 372
             CK  K      +L++M+ +GV P+S T   ILN L   G+ D A      M  +    
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  TY  ++   C+ G +++A      M   +  P + +++++I  LC  G  + +  + 
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           ++M+++G+ P    +  L   L + G ED+
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDL 532



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 7/245 (2%)

Query: 92  NYEHS--VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           NY  S  V  Y ++++ L K+ +     DL+  M  + +  +  T   I+   ++  KV+
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
            A+     M+  G T +L  +N LL  LCK+  + +A      M   +  PD  +Y+I++
Sbjct: 427 YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               +      A  IF+EMV  G  PD V Y  ++D L + G  D AL ++K+   ++C+
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---SLCK 543

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P   ++ ++V       + EDA +    M   G  AD   Y  ++    K  K     ++
Sbjct: 544 PDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQL 603

Query: 328 LKDMN 332
           + D +
Sbjct: 604 VDDAS 608



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G    V  YN  + A  KAN  +  Y   + M  +G  P+  T +I+L GL   GE D
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 358 EAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIPSMHTF 412
           +A  +  ++    +KL   +  TY+++I   C+   ++ A +++K M      +P + TF
Sbjct: 91  KAKELLGQLRESGVKL---NVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTF 147

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + L+ GLC    +S++ VL E M + G  P+  ++  L   L K GR D    L E+M
Sbjct: 148 NSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEM 205


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 212/484 (43%), Gaps = 76/484 (15%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           D  L+     ++P+ V  VL    +A   A  FF+WA+KQ+ Y+H+  AY +MI+ L + 
Sbjct: 171 DNFLNSMAQDLNPDAVVKVLNLQTDAQN-ALRFFQWADKQEGYDHNTDAYFTMIDILGRA 229

Query: 111 RQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL--A 167
           + +  +  L+  M+T+ R +        +  Y R  + +E++  FN+M++ G    L   
Sbjct: 230 KMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDT 289

Query: 168 AFNGLLSALCKSKNVRKAQEIF------------------------------------DC 191
           A+N +L +L K+K +  A+ +F                                    D 
Sbjct: 290 AYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDM 349

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +++ + PD  TY+I++    K   + +A  + ++M + GC P+I TY  ++  LC   R 
Sbjct: 350 IQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRP 409

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVH----------------------------TYGV- 282
           +EAL +V  M+     P  + Y++L H                            TY   
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTL 469

Query: 283 ------ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                  +R+ +A+D   EM +N    D   Y  LI    + N+  +  R+  +M +KG 
Sbjct: 470 LNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGY 529

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFK 395
             N  T NI+  GL   G   +A   +RRM     A  A  Y + I      GE+E+A  
Sbjct: 530 DVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQA 589

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +   M  K + P++ T++ +I G C +G + D+  +L  MIE GI P   ++  L K   
Sbjct: 590 LLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFH 649

Query: 456 KEGR 459
            +GR
Sbjct: 650 NQGR 653



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 3/345 (0%)

Query: 99  AYHSMIESL-AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y SMI+    K +    M  L + ++     +V T+ I++    + + +E+A      M
Sbjct: 325 TYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKM 384

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNL 216
           ++ G   N+  +N L+  LC  +   +A E+   M+   +P +  TY+IL  G  K   L
Sbjct: 385 RENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRL 444

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA+E+F E +  G  P+ VTY  +++  C+  R+ EA+ I+K M    C P    Y+ L
Sbjct: 445 DRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTL 504

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +      N++ DA+    EME  G   +    N L     +    K+     + M  +G 
Sbjct: 505 IQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGF 564

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           A ++    + ++ L   GE +EA  +   MI K    +  TY  MIK FC+ G L+ A  
Sbjct: 565 AYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADA 624

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  +M      P   ++++LI    ++G   D+  L    +E+G+
Sbjct: 625 MLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGV 669



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 139/311 (44%), Gaps = 37/311 (11%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q NY   V  Y  +I +L K +  +  + ++  MR      N+ T+  +++    V++ E
Sbjct: 351 QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE 410

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA+    +M++ GV  N+  +  L   LCK + + +A+E+F+    R + P+  TY+ LL
Sbjct: 411 EALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLL 470

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM------ 261
            G+ +   L  A +I +EM    C PD VTY  ++  L +  ++ +AL +   M      
Sbjct: 471 NGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYD 530

Query: 262 --------------------DSTV----CRPTSFIYS-----VLVHTYGVENRIEDAVDT 292
                               D+++     +   F YS     + +H       +E+A   
Sbjct: 531 VNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQAL 590

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM   G   ++  YN +I  FC+  +  +   +L  M   G+ P++ + NI++     
Sbjct: 591 LYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHN 650

Query: 353 RGETDEAYRVF 363
           +G T +A +++
Sbjct: 651 QGRTQDADQLY 661


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 175/332 (52%), Gaps = 2/332 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++  + R  +V+ A     VM++ GV  +L  FN +++ LCK+  +  A+++F
Sbjct: 189 NVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMF 248

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M ++   PD  +Y+ L+ G+ K   L  A  +F EM   G  PD+VT+  ++  +C+A
Sbjct: 249 DEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRA 308

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A+ +V  M     R   F ++ L+  +     ++DA+    EM +  I   V  Y
Sbjct: 309 GNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCY 368

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  +CK  +      ++ +M +KG+ P+  T + IL+G    G+TD A+ + R+M+K
Sbjct: 369 NVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLK 428

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                DA TY+ +I+  C+   L  A ++++ M      P   T++ LI+G C +G V  
Sbjct: 429 KGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQK 488

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +  L ++MI+KG+ P   T+  L   L K  R
Sbjct: 489 ALSLHDEMIKKGVLPDVVTYSVLIDGLSKSAR 520



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 2/312 (0%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           G   +L A+N +L AL  +      + +   ++D   P+  TY+IL+           A 
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 221 EIF-REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            +   +M   GC P++VTY  +V   C+AG VD A  +V  M     RP+   ++ +V+ 
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNG 234

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                R+EDA   F EM + G+  D   YN L+  +CKA        V  +M  KGV P+
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T   +++ +   G  + A  +  +M  +    +  T+T +I  FC+ G L+ A    K
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M+  R  PS+  ++VLING C  G + ++  L+ +M  KG++P   T+  +     K G
Sbjct: 355 EMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414

Query: 459 REDVLKFLQEKM 470
             D    L  KM
Sbjct: 415 DTDSAFELNRKM 426



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 177/416 (42%), Gaps = 71/416 (17%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKY-ARVQKVEEA 150
            Y  S+ AY++++ +L+          L + +R     NV T+ I++R   AR Q+ E  
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
               + M+  G   N+  +N L++A C++  V  A+ +   M+                 
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMR----------------- 217

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                            + G  P +VT+  +V+ LCKAGR+++A  +   M      P  
Sbjct: 218 -----------------EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ LV  Y     + +A+  F EM + G++ DV  + +LI A C+A   +    ++  
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQ 320

Query: 331 MNSKGVAPNS--------------------------RTC---------NIILNGLIGRGE 355
           M  +G+  N                           R C         N+++NG    G 
Sbjct: 321 MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGR 380

Query: 356 TDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            DEA  +   M  K  + D  TY+ ++  +C+ G+ + AF++ + M  K  +P   T+S 
Sbjct: 381 MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSS 440

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LI GLC++  + D+C L E M++ G++P   T+  L     KEG       L ++M
Sbjct: 441 LIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEM 496



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 202/421 (47%), Gaps = 23/421 (5%)

Query: 76  AGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVET 133
           AG L      +AE  Q+     V  + S+I ++ +    +    LV  MR + + +N  T
Sbjct: 273 AGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFT 332

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F  ++  + R   +++A+     M++  +  ++  +N L++  CK   + +A+E+   M+
Sbjct: 333 FTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEME 392

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            + + PD  TYS +L G+ K  +   A E+ R+M+  G  PD +TY  ++  LC+  R+ 
Sbjct: 393 AKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLG 452

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  + + M     +P  F Y+ L+  +  E  ++ A+    EM K G+L DV  Y+ LI
Sbjct: 453 DACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLI 512

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNS----------RTCNI-----ILNGLIGRGETD 357
               K+ + K   R+L  +  +   P++          RT        +L G   +G  +
Sbjct: 513 DGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMN 572

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +A +V++ M+ +  + D   Y+++I   C+GG + KA    K +    F P+  +   L+
Sbjct: 573 QADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLV 632

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
            GL ++G+  ++  ++++++        ET     K LI   R++ + + Q +  L +++
Sbjct: 633 RGLFEEGMTVEADNVIQELLNCCSLADAET----SKALIDLNRKEGVGYFQAQGELCMQK 688

Query: 477 P 477
           P
Sbjct: 689 P 689


>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays]
 gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]
          Length = 467

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 207/432 (47%), Gaps = 14/432 (3%)

Query: 40  KIMLSSPKVVLDTALDQSGIRVSPEIVEDVL---EKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I+   P   ++ AL   GI  + E+ E VL   E ++   + A  FF+WA   Q+  H+
Sbjct: 26  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKS-AVRFFRWA--GQSVSHT 82

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVEEAVYT 153
             A++ +++ L K   ++ MWD + +M+ +    +++V TF  +   Y     +++A+  
Sbjct: 83  AYAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAA 142

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
            +VM +YG+  +  A N LLSA+C+ +   + AQ++F+  K    PD  T++ILLE W K
Sbjct: 143 LDVMDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEK 202

Query: 213 DPNLPRAREIFREM-VDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           + N  RA+ +F EM V  G +  ++  Y   +  L + G +DEA   ++ M S  C P  
Sbjct: 203 EGNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGI 262

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             +S  V     +    +AV  +  M  + G++ + +MY+A+IG  C A    +   +L 
Sbjct: 263 NFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLD 322

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGG 388
           +M   GV  NS T N IL G I   +  EA      M K  +   A      I +F +  
Sbjct: 323 EMPLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEF 382

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
               A  VW+ +      P+  +   LI GL D G  ++     ++MI+  +  S  T  
Sbjct: 383 NPSAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTME 442

Query: 449 KLRKLLIKEGRE 460
            +++   K GR 
Sbjct: 443 NMKRAFAKAGRH 454



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 141/322 (43%), Gaps = 16/322 (4%)

Query: 94  EHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           +H   A +S++ ++ ++  + Q   D+    +     + +TF I++  + +      A  
Sbjct: 152 KHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGNAVRAKS 211

Query: 153 TFN--VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEG 209
            F   V++      N++A++  LS L +   + +A +    M+ +  +P    +S  ++ 
Sbjct: 212 VFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFFSTAVDL 271

Query: 210 WGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
             +  +   A  I+  MV + G  P+   Y  M+ + C AG +D+ALG++  M       
Sbjct: 272 VVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDEMPLNGVFA 331

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYNALIGAFCK---ANKFKNV 324
            S  Y+ ++  + +++R     ++FL EM KN  L   +   A I  F K    +   +V
Sbjct: 332 NSVTYNTILEGF-IKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNPSAAIDV 390

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           +R + + N   + P   +   ++ GL+  G   E  +    MI +  E    T   M + 
Sbjct: 391 WRCIVEHN---ITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTMENMKRA 447

Query: 384 FCQGGELEKAFKVWKYMKLKRF 405
           F + G  +    + +  +LKR+
Sbjct: 448 FAKAGRHQSYDNIAR--RLKRY 467


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 193/372 (51%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +  ++ +   Y  +++ + K  Q  +  +L+  M  +++ L+   + II+    +   ++
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD 264

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A   FN M+  G   ++  +  L+   C +       ++  D +K +  PD   +S L+
Sbjct: 265 NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALI 324

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A E+ +EM+  G +PD VTY  ++D  CK  ++D+A  ++  M S  C 
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCG 384

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    +++L++ Y   N I+D ++ F +M   G++AD   YN LI  FC+  K +    +
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M S+ V P+  +  I+L+GL   GE ++A  +F ++ K   E D   Y ++I   C 
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             +++ A+ ++  + LK   P + T++++I GLC KG +S++ +L   M E G  P+G T
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCT 564

Query: 447 FGKLRKLLIKEG 458
           +  L +  + EG
Sbjct: 565 YNILIRAHLGEG 576



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 188/374 (50%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +  +   +A+ +QY ++ DL   M  K +  N+ T  I++    R +K+  A      + 
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKII 134

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           K G   +   F+ L++ LC    V +A E+ D M +    P   T + L+ G   +  + 
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS 194

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   MV+TG  P+ VTYG ++ V+CK+G+   A+ +++ M+    +  +  YS+++
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                +  +++A + F EME  G  AD+ +Y  LI  FC A ++ +  ++L+DM  + + 
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT 314

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P+    + +++  +  G+  EA  + + MI+     D  TYT +I  FC+  +L+KA  +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M  K   P++ TF++LING C   ++ D   L   M  +G+     T+  L +   +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 457 EGREDVLKFLQEKM 470
            G+ +V K L ++M
Sbjct: 435 LGKLEVAKELFQEM 448



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 37/362 (10%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYS 204
           KV +AV   + M + G   N   +  +L  +CKS     A E+   M++R I  D+  YS
Sbjct: 192 KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYS 251

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+++G  KD +L  A  +F EM   G   DI+ Y  ++   C AGR D+   +++ M   
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    +S L+  +  E ++ +A +   EM + GI  D   Y +LI  FCK N+    
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
             +L  M SKG  PN RT NI++NG       D+   +FR+M ++   AD  TY  +I+ 
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 384 FCQ-----------------------------------GGELEKAFKVWKYMKLKRFIPS 408
           FC+                                    GE EKA ++++ ++  +    
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           +  ++++I+G+C+   V D+  L   +  KG++P  +T+  +   L K+G       L  
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFR 551

Query: 469 KM 470
           KM
Sbjct: 552 KM 553



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 139/265 (52%), Gaps = 5/265 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +  ++++A +  ++M   G   N+  FN L++  CK+  +    E+F  M
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM 413

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R  + D+ TY+ L++G+ +   L  A+E+F+EMV     PDIV+Y I++D LC  G  
Sbjct: 414 SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP 473

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++AL I + ++ +       IY++++H     ++++DA D F  +   G+  DV  YN +
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           IG  CK         + + M   G +PN  T NI++   +G G+  ++ ++    IK C 
Sbjct: 534 IGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEE-IKRCG 592

Query: 371 -EADADTYTMMIKMFCQGGELEKAF 394
              DA T  M++ M    G L+K+F
Sbjct: 593 FSVDASTVKMVVDML-SDGRLKKSF 616



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ + +DAVD F EM ++     +  ++ L     +  ++  V  + K M  KG+A N  
Sbjct: 49  VDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLY 108

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T +I++N      +   A+    ++IKL  E D  T++ +I   C  G + +A ++   M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P++ T + L+NGLC  G VSD+ +L++ M+E G +P+  T+G + K++ K G+ 
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 461 DVLKFLQEKM 470
            +   L  KM
Sbjct: 229 ALAMELLRKM 238



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 36/277 (12%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++F+EM  +   P ++ +  +  V+ +  + D  L + K M+        +  S++++
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 ++  A     ++ K G   D   ++ LI   C   +      ++  M   G  P
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEA---------- 372
              T N ++NGL   G+  +A  +  RM++                +C++          
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235

Query: 373 ----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                     DA  Y+++I   C+ G L+ AF ++  M++K F   +  ++ LI G C  
Sbjct: 236 RKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYA 295

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           G   D   LL DMI++ I P    F  L    +KEG+
Sbjct: 296 GRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 193/372 (51%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +  ++ +   Y  +++ + K  Q  +  +L+  M  +++ L+   + II+    +   ++
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD 264

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A   FN M+  G   ++  +  L+   C +       ++  D +K +  PD   +S L+
Sbjct: 265 NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALI 324

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A E+ +EM+  G +PD VTY  ++D  CK  ++D+A  ++  M S  C 
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCG 384

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    +++L++ Y   N I+D ++ F +M   G++AD   YN LI  FC+  K +    +
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M S+ V P+  +  I+L+GL   GE ++A  +F ++ K   E D   Y ++I   C 
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             +++ A+ ++  + LK   P + T++++I GLC KG +S++ +L   M E G  P+G T
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCT 564

Query: 447 FGKLRKLLIKEG 458
           +  L +  + EG
Sbjct: 565 YNILIRAHLGEG 576



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 188/374 (50%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +  +   +A+ +QY ++ DL   M  K +  N+ T  I++    R +K+  A      + 
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKII 134

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           K G   +   F+ L++ LC    V +A E+ D M +    P   T + L+ G   +  + 
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS 194

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   MV+TG  P+ VTYG ++ V+CK+G+   A+ +++ M+    +  +  YS+++
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                +  +++A + F EME  G  AD+ +Y  LI  FC A ++ +  ++L+DM  + + 
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT 314

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P+    + +++  +  G+  EA  + + MI+     D  TYT +I  FC+  +L+KA  +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M  K   P++ TF++LING C   ++ D   L   M  +G+     T+  L +   +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 457 EGREDVLKFLQEKM 470
            G+ +V K L ++M
Sbjct: 435 LGKLEVAKELFQEM 448



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 171/340 (50%), Gaps = 26/340 (7%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +  ++++A +  ++M   G   N+  FN L++  CK+  +    E+F  M
Sbjct: 354 TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM 413

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R  + D+ TY+ L++G+ +   L  A+E+F+EMV     PDIV+Y I++D LC  G  
Sbjct: 414 SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP 473

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++AL I + ++ +       IY++++H     ++++DA D F  +   G+  DV  YN +
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR------- 364
           IG  CK         + + M   G +PN  T NI++   +G G+  ++ ++         
Sbjct: 534 IGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGF 593

Query: 365 ---------------RMIKLC-EADADTYTMMIKMFC--QGGELEKAFKVWKYMKLKRFI 406
                          RM+K   E D  T+T +++ FC  +   +  A  ++K MK   + 
Sbjct: 594 SVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYK 653

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           P++ T++ +I GL +  ++S    +L+ M E+G +P+  T
Sbjct: 654 PNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVT 693



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ + +DAVD F EM ++     +  ++ L     +  ++  V  + K M  KG+A N  
Sbjct: 49  VDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLY 108

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T +I++N      +   A+    ++IKL  E D  T++ +I   C  G + +A ++   M
Sbjct: 109 TLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRM 168

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P++ T + L+NGLC  G VSD+ +L++ M+E G +P+  T+G + K++ K G+ 
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 461 DVLKFLQEKM 470
            +   L  KM
Sbjct: 229 ALAMELLRKM 238



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 36/277 (12%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++F+EM  +   P ++ +  +  V+ +  + D  L + K M+        +  S++++
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 ++  A     ++ K G   D   ++ LI   C   +      ++  M   G  P
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEA---------- 372
              T N ++NGL   G+  +A  +  RM++                +C++          
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235

Query: 373 ----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                     DA  Y+++I   C+ G L+ AF ++  M++K F   +  ++ LI G C  
Sbjct: 236 RKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYA 295

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           G   D   LL DMI++ I P    F  L    +KEG+
Sbjct: 296 GRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN--VRKAQEIFDCMKDR-FIPDSKTYSIL 206
           A+ T   M K G   ++  F  LL   C  +N  V  A  +F  MK   + P+  TY+ +
Sbjct: 603 ALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           ++G      + +   +  +M + GC P+ VT    +  LCK      A+ +++ M++
Sbjct: 663 IKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMEN 719


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 202/388 (52%), Gaps = 7/388 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P +V  VL + ++   +A  FF WA++Q  Y H    Y++M++ L+K R  Q    ++
Sbjct: 162 LNPRLVCAVL-RSQDDERIALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRIL 220

Query: 121 NAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
             M T+R +  + E F  +M  Y+R   +  A+    +MQK GV  +L+  N  +  L K
Sbjct: 221 RLM-TRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVK 279

Query: 179 SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
              + KA    + MK   I PD  +Y+ L++G+     +  A E+  EM   GC PD V+
Sbjct: 280 GNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVS 339

Query: 238 YGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           Y  ++  LCK  +V+E   ++++M  ++   P    Y+ L++        +DA+    E 
Sbjct: 340 YYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREA 399

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           E+ G   D   Y+A++ +FCK         ++ DM SKG  P+  T   I++G    G+ 
Sbjct: 400 EEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKI 459

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           DEA ++ ++M K  C+ +  TYT+++   C  G+  +A ++    +   + P+  T+S +
Sbjct: 460 DEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAV 519

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           ++GL  +G +S++C L  +MIEKG  P+
Sbjct: 520 MHGLRREGKLSEACDLTREMIEKGFLPN 547



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/466 (21%), Positives = 202/466 (43%), Gaps = 44/466 (9%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           + + GI  SPE    V+  +  AG L  A       +K    E  +   ++ I  L K  
Sbjct: 223 MTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKA-GVEPDLSICNTAIYVLVKGN 281

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           + +     +  M+   +  ++ ++  +++ Y  V ++++A+     M   G   +  ++ 
Sbjct: 282 KLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYY 341

Query: 171 GLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILL--------------------- 207
            +++ LCK + V + + + + M      IPD  TY+ L+                     
Sbjct: 342 TVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEE 401

Query: 208 --------------EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
                         + + K+ N+ +A+ +  +M   GCNPD+VTY  ++D  C+ G++DE
Sbjct: 402 KGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDE 461

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  +++ M    C+P +  Y+VL++      +  +A +     E++    +   Y+A++ 
Sbjct: 462 AKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMH 521

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEA 372
              +  K      + ++M  KG  PN    N+++  L        A +     + K C  
Sbjct: 522 GLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAV 581

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +   +T +I  FCQ G+L+ A  + + M L    P   T++ L + L  K  + ++  L+
Sbjct: 582 NVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELI 641

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
             M+ KGI P+  T+  +     + GR D +  L EKM  + ++P 
Sbjct: 642 VKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKM--IARQPF 685



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 182/400 (45%), Gaps = 41/400 (10%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  F + AE++  +   V  Y ++++S  K +       LV  M +K    +V T+  I+
Sbjct: 392 ALVFLREAEEKGFHIDKV-GYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAII 450

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-I 197
             + RV K++EA      M K+G   N   +  LL+ LC +    +A+E+ +  ++ +  
Sbjct: 451 DGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWT 510

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK---------- 247
           P++ TYS ++ G  ++  L  A ++ REM++ G  P+ V   +++  LC+          
Sbjct: 511 PNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKY 570

Query: 248 -------------------------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
                                     G +D AL +++ M  +   P +  Y+ L    G 
Sbjct: 571 LEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGK 630

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           ++R+++A +  ++M   GI      Y A+I  FC+  +  ++ ++L+ M ++   P    
Sbjct: 631 KSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIAR--QPFKTV 688

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N ++  L   G  +EA ++  ++++   + DA T  ++I+ +   G    A+KV   M 
Sbjct: 689 YNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDGNALSAYKVACQMF 748

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            +  IP +     +   L   G+ +++  L+   +E+GI+
Sbjct: 749 RRNLIPDLKLCEKVTKKLVLDGMPAEADDLMLRFVERGIQ 788



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 6/280 (2%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC--NPDIVTYGIMVDVLCKAGRVD 252
           R+  D+  Y  +L+   K      AR I R M   G   +P+  +Y +MV    +AG + 
Sbjct: 192 RYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSY-VMVSY-SRAGMLR 249

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            AL I+  M      P   I +  ++     N++E A+     M+  GI  D+  YN LI
Sbjct: 250 NALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLI 309

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE- 371
             +C  ++  +   ++ +M  KG  P+  +   ++  L    + +E  R+   M++    
Sbjct: 310 KGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNL 369

Query: 372 -ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY  +I    + G  + A    +  + K F      +S +++  C    +  +  
Sbjct: 370 IPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKS 429

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L+ DM  KG  P   T+  +     + G+ D  K + ++M
Sbjct: 430 LVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQM 469


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 214/449 (47%), Gaps = 12/449 (2%)

Query: 32  LDAAKSISKIMLS-----SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFF 84
           L  A+S+ + ++S     S   V  + L+  G   S  +   ++  + ++G    A   F
Sbjct: 119 LSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCF 178

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYAR 143
           +   K  N +    +   + + L K+      W      +      +V  F ++M +  +
Sbjct: 179 RLVRKH-NLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCK 237

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
             K+ EA   F  + K G+   + +FN L++  CKS N+ +   +    M++R  PD  T
Sbjct: 238 EHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFT 297

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           YS+L+ G  K+  L  A ++F EM D G  P+ VT+  +++  C  GR D  + I + M 
Sbjct: 298 YSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML 357

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               +P    Y+ L++       + +A    +EM + G+  D   Y  LI   CK    +
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
           +   + K+M  +G+  ++     +++G    G+  EA R  R M++   + D  TYTM+I
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             FC+ G+++  FK+ K M+    +P + T++VL+NGLC +G + ++ +LL+ M+  G+ 
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537

Query: 442 PSGETFGKLRKLLIKEG-REDVLKFLQEK 469
           P   T+  L +   K G RED  K   EK
Sbjct: 538 PDDITYNILLEGHCKHGNREDFDKLQSEK 566



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 219/496 (44%), Gaps = 64/496 (12%)

Query: 25  SEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA--- 80
           + P++   D    +IS+ +  SP   L ++L +    ++P  + D++    N  +L+   
Sbjct: 28  TPPTSHCHDPILTTISEAIKVSPTKPLHSSLKRILPSLTPNHLIDLIN--LNPHSLSPPS 85

Query: 81  -FCFFKWAEKQQNYEHSVRAY---------HSMIESLAKIRQYQI----------MWDLV 120
              FFKW   Q ++  S+ +Y         H M+     + Q+ +          ++  V
Sbjct: 86  LLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSV 145

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-------------------- 160
              R     N+  F ++M  Y       +A+  F +++K+                    
Sbjct: 146 LEARGTHQSNL-VFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLN 204

Query: 161 ---------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
                          G   ++  FN L+  LCK   + +AQ +F  +  R + P   +++
Sbjct: 205 LTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFN 264

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+ G+ K  NL +   + R M++    PD+ TY ++++ LCK G++D+A  +   M   
Sbjct: 265 TLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDR 324

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    ++ L++ + V  R +  ++ + +M + G+  DV  YN LI   CK    +  
Sbjct: 325 GLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREA 384

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
            +++ +M  +G+ P+  T  ++++G    G+ + A  + + M+K   E D   +T +I  
Sbjct: 385 KKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISG 444

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC+ G++ +A +  + M      P   T++++I+G C KG V     LL++M   G  P 
Sbjct: 445 FCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPG 504

Query: 444 GETFGKLRKLLIKEGR 459
             T+  L   L K+G+
Sbjct: 505 VVTYNVLLNGLCKQGQ 520


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 204/384 (53%), Gaps = 4/384 (1%)

Query: 92   NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            N +  V  Y  +I++L K        D+ + M    +L +V  +  +M    R  +++EA
Sbjct: 1080 NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 1139

Query: 151  VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
            +  F  M+  G++ ++  +N L+  L ++   ++     + M DR F PD+ T++IL++G
Sbjct: 1140 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 1199

Query: 210  WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
              K+  +  A++I   M   G  PDI+TY  +++ LC  G++++A  + +S+     +  
Sbjct: 1200 LCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLN 1259

Query: 270  SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             F Y++L++ Y  + +I++A   F EM   G+      YN LIGA C++ + +   ++  
Sbjct: 1260 VFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFV 1319

Query: 330  DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            +M + G      T  ++L+GL   G  +EA  +F+ + K   + + + +++++   C+ G
Sbjct: 1320 EMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAG 1379

Query: 389  ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +LE+A+K +  +      P    +++LINGLC+KG++S++  LL  M EKG  P   TF 
Sbjct: 1380 KLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFN 1439

Query: 449  KLRKLLIKEGR-EDVLKFLQEKMN 471
             + + L+KE    + ++ L+E  N
Sbjct: 1440 VIIQNLLKENEIHEAIQLLEEMRN 1463



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 152/303 (50%), Gaps = 3/303 (0%)

Query: 159  KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
            K G   +      L+  +     +  A ++FD M K   + D+KTY IL+ G  K     
Sbjct: 1009 KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTG 1068

Query: 218  RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
             A ++  +M    C  D+ TYG+++D LCK G   EAL +   M      P   +YS L+
Sbjct: 1069 LAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 1127

Query: 278  HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   R+++A++ F EME  GI ADV  YN+LI    +A  +K V   L  M  +G +
Sbjct: 1128 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 1187

Query: 338  PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            P++ T  I+++GL   G+  EA ++   M  K  E D  TY  ++   C  G+LE A K+
Sbjct: 1188 PDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKL 1247

Query: 397  WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            ++ +  +    ++ ++++LING C    + ++    E+M  KG++PS  T+  L   L +
Sbjct: 1248 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQ 1307

Query: 457  EGR 459
             GR
Sbjct: 1308 SGR 1310



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 141/262 (53%), Gaps = 4/262 (1%)

Query: 89   KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
            + +  E  +  Y++++  L  + Q +    L  ++  + + LNV ++ I++  Y + QK+
Sbjct: 1217 RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 1276

Query: 148  EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFIPDSKTYSI 205
            +EA   F  M+  G+  +   +N L+ ALC+S  VR AQ++F  M+   +F+  S TY +
Sbjct: 1277 DEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS-TYCV 1335

Query: 206  LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
            LL+G  K+ +L  A ++F+ +  T   P+I  + I++D +C+AG+++EA      +    
Sbjct: 1336 LLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNG 1395

Query: 266  CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
              P +  Y++L++    +  + +AV    +ME+ G L D   +N +I    K N+     
Sbjct: 1396 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAI 1455

Query: 326  RVLKDMNSKGVAPNSRTCNIIL 347
            ++L++M ++  +P+    +++L
Sbjct: 1456 QLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 147/326 (45%), Gaps = 9/326 (2%)

Query: 158  QKYGVTQNLAAFNGLLSALCKSKNVR--KAQEIFD-CMKDRFIPDSKTYSILLEGWGKDP 214
            +K G   +L+ F   +   C+   ++   A ++FD  +    +P + T++ LL    K  
Sbjct: 901  EKIGTKASLSPFERYVRDQCRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLG 960

Query: 215  NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                   ++R++ D G  PD+ T  I++   C    V    G+          P +   +
Sbjct: 961  YYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVT 1020

Query: 275  VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM--N 332
             LV    +EN I DAV  F EM K G+L D   Y  LI   CKA K     ++ + M  N
Sbjct: 1021 TLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGN 1080

Query: 333  SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
             KG   +  T  +I++ L   G T EA  +F  MI      D   Y+ ++   C+ G L+
Sbjct: 1081 CKG---DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLK 1137

Query: 392  KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            +A + +K M+ +     ++T++ LI+GL   G+  +    L  M+++G  P   TF  L 
Sbjct: 1138 EALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 1197

Query: 452  KLLIKEGREDVLKFLQEKMNLLVKEP 477
              L KEG+    + + E M    KEP
Sbjct: 1198 DGLCKEGKVGEAQQILELMRHKGKEP 1223


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 199/416 (47%), Gaps = 43/416 (10%)

Query: 84  FKW-AEKQQNY-EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRK 140
           FK+ AE  +N+   +V  Y ++++ L K  + +    L++ MR K    N+ T+ +I+  
Sbjct: 65  FKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEG 124

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
               +K++EA      M   G   ++  +N  +  LCK   V +A++    M     PD 
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDV 182

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            +Y+ ++ G  K  +L  A  +  +M + GC PD+VTY  ++D  CK G V+ A+G++ S
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDS 242

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    CRP    Y+ L+        I  A D  +EME+ G   DV  YNA I   CKA +
Sbjct: 243 MLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 302

Query: 321 FKNVYRVLKDMNSKGVAPNSRT--------C---------------------------NI 345
            K    V   M  +G  PN+ +        C                            +
Sbjct: 303 VKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTV 362

Query: 346 ILNGLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           +L+GL   G  DEA  +F +++  K+CE D   Y +M+   C+  +++KA ++ K M L+
Sbjct: 363 LLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM-LE 421

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           R   ++ T+++L++GLC    +SD+  +L  M+++G  P   T+G L   + K G+
Sbjct: 422 RNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 477



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 40/330 (12%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           F  LL  LC+S  + KA+++   MK+   +PD   Y+ L+ G+ K  +  +A +   EMV
Sbjct: 13  FAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMV 72

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
              C P +VTY  +VD LCKAGR  +A+ ++  M    C P  + Y+V+V     E +++
Sbjct: 73  KNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLD 132

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A     EM   G   DV  YN+ I   CK ++     + L  M    V P+  +   ++
Sbjct: 133 EAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVI 189

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY------- 399
           NGL   G+ D A R+  +M  + C  D  TY+ +I  FC+GGE+E+A  +          
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 249

Query: 400 ----------------------------MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
                                       M+ + F P + +++  I+GLC    V  +  +
Sbjct: 250 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 309

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            + M+E+G  P+  ++  L + L K+   D
Sbjct: 310 FDRMVERGCTPNASSYSMLVEELCKKKELD 339



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 126/270 (46%), Gaps = 6/270 (2%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ T++ILL G  +   L +AR++   M + GC PD   Y  ++    KA    +A   
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M    C PT   Y+ +V       R +DAV    EM   G   ++  YN ++   C+
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
             K     ++L++M  +G  P+  T N  + GL      DEA +   RM      D  +Y
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSY 185

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T +I   C+ G+L+ A ++   M  +   P + T+S LI+G C  G V  +  LL+ M++
Sbjct: 186 TTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 245

Query: 438 KGIRPSGETFGKLRKLLIKEGR----EDVL 463
            G RP+   +  L   L + G     ED+L
Sbjct: 246 LGCRPNMVAYNSLLGALHRLGHIGKAEDML 275



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 177/393 (45%), Gaps = 49/393 (12%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y ++I  L K         +++ M  +    +V T+  ++  + +  +VE A+   +
Sbjct: 182 VVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 241

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M K G   N+ A+N LL AL +  ++ KA+++   M+ R F PD  +Y+  ++G  K  
Sbjct: 242 SMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAE 301

Query: 215 NLPRAREIFREMVDTGCNP-----------------------------------DIVTYG 239
            + +A+ +F  MV+ GC P                                   DI+ Y 
Sbjct: 302 RVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYT 361

Query: 240 IMVDVLCKAGRVDEALGIV-KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM-E 297
           +++D LCK GR DEA  +  K +D  +C P  F Y+V++ ++    +I+ A+    +M E
Sbjct: 362 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 421

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +N    +V  +N L+   C  ++  +   +L  M  +G  P+  T   +++ +   G++ 
Sbjct: 422 RN--CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSA 479

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A  +F   +K  C  D  TY+ +I         E+A+ ++  +        +  ++ +I
Sbjct: 480 AALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------DVALWNAMI 532

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            G  + G       L  ++IE  + P+  TFGK
Sbjct: 533 LGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 4/234 (1%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M+D  C PD  T+ I++  LC++ ++++A  ++  M    C P   IY+ L+  Y     
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
              A     EM KN  L  V  Y  ++   CKA + K+  ++L +M  KG +PN  T N+
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 346 ILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           I+ GL    + DEA ++   M ++    D  TY   IK  C+   +++A K    M +  
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV-- 178

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
             P + +++ +INGLC  G +  +  +L+ M  +G  P   T+  L     K G
Sbjct: 179 -TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 11/307 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFN-V 156
           +Y  ++E L K ++      LV   R K +++++  + +++    +  + +EA   F+ V
Sbjct: 324 SYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKV 383

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           + +     ++  +N +L + CK + + KA +I   M +R   +  T++IL+ G   D  L
Sbjct: 384 LDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRL 443

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +   MVD G  PD VTYG +VD +CK G+   AL + +      C P    YS L
Sbjct: 444 SDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSAL 503

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     EN  E+A   F ++       DVA++NA+I  + +        ++  ++    V
Sbjct: 504 ITGLVHENMAEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDV 556

Query: 337 APNSRTCNIILNGLIGRGET-DEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAF 394
            PN+RT    ++G + + E+  +A  +F R +K     D      +I +F + G+LE+A 
Sbjct: 557 EPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEAR 616

Query: 395 KVWKYMK 401
           +++  MK
Sbjct: 617 RIFYSMK 623


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 221/460 (48%), Gaps = 32/460 (6%)

Query: 18  FLRRYNSSEP----STEALDAA------KSISKIMLSSP-KVVLDTALDQSGIRVSPEIV 66
           F+   +S +P      E L AA      +++++++ + P    L ++L +    +S   V
Sbjct: 39  FISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTV 98

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
              L+  R     A  FF+W E  + + H+ ++Y  MIE L + R      + V ++  K
Sbjct: 99  LQTLQLIRTPAK-ALHFFRWVE-AKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKK 156

Query: 127 R----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
                 L    F  ++R Y      +E++  F  M++ GV+ ++  FN LLS + K    
Sbjct: 157 SGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRT 216

Query: 183 RKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
             A+++FD M D +   PD+ T++IL+ G+  +  +      F+EM    C+PD+VTY  
Sbjct: 217 SMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNT 276

Query: 241 MVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
           +VD LC+AG+V  A  +VK M   S    P    Y+ L+  Y ++  + +A+    EM  
Sbjct: 277 LVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS 336

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETD 357
            G+  +   YN LI   C+A K   +  +L+ M    G  P++ T N ++      G+ +
Sbjct: 337 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 396

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-------PSM 409
           EA+ VF +M +L  + D+ TY+++++  CQ G+  +A + +  +  K  +       P +
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLV 456

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR--PSGETF 447
             ++ +   LC  G    +  +   ++++G +  PS +T 
Sbjct: 457 AAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTL 496



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 194/449 (43%), Gaps = 54/449 (12%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR---MLNVETFCI 136
            F FFK   + +  +  V  Y+++++ L +  + +I  ++V  M  K      NV T+  
Sbjct: 255 GFWFFKEMSRFK-CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTT 313

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KD 194
           ++R Y   Q + EA+     M   G+  N   +N L+  LC+++ + K +EI + M    
Sbjct: 314 LIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDG 373

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG---RV 251
            FIPD+ T + L++       L  A  +F +M +    PD  TY ++V  LC+ G   R 
Sbjct: 374 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 433

Query: 252 DEALGIVKS----MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +E    +      +    C+P    Y+ +        + + A   F ++ K G   D   
Sbjct: 434 EEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGT-QDPPS 492

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI   C+    +  + +L  M  +   P++ T  ++++GL+ +G+   A++   +M+
Sbjct: 493 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 368 K----------------LCEA----------------------DADTYTM--MIKMFCQG 387
           K                L E                       D  T+TM  ++   CQ 
Sbjct: 553 KSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQS 612

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            +L +A K+  +   KR    +   S +I+GLC    VS++  L  +++EKG++      
Sbjct: 613 RKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQ 672

Query: 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
             LR  L  EGR +  KF+ +KM  + K+
Sbjct: 673 EDLRISLEAEGRLNEAKFVSKKMPEVPKQ 701


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 221/460 (48%), Gaps = 32/460 (6%)

Query: 18  FLRRYNSSEP----STEALDAA------KSISKIMLSSP-KVVLDTALDQSGIRVSPEIV 66
           F+   +S +P      E L AA      +++++++ + P    L ++L +    +S   V
Sbjct: 39  FISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTV 98

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
              L+  R     A  FF+W E  + + H+ ++Y  MIE L + R      + V ++  K
Sbjct: 99  LQTLQLIRTPAK-ALHFFRWVE-AKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKK 156

Query: 127 R----MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
                 L    F  ++R Y      +E++  F  M++ GV+ ++  FN LLS + K    
Sbjct: 157 SGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRT 216

Query: 183 RKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
             A+++FD M D +   PD+ T++IL+ G+  +  +      F+EM    C+PD+VTY  
Sbjct: 217 SMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNT 276

Query: 241 MVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
           +VD LC+AG+V  A  +VK M   S    P    Y+ L+  Y ++  + +A+    EM  
Sbjct: 277 LVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS 336

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETD 357
            G+  +   YN LI   C+A K   +  +L+ M    G  P++ T N ++      G+ +
Sbjct: 337 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 396

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-------PSM 409
           EA+ VF +M +L  + D+ TY+++++  CQ G+  +A + +  +  K  +       P +
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLV 456

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR--PSGETF 447
             ++ +   LC  G    +  +   ++++G +  PS +T 
Sbjct: 457 AAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTL 496



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 187/478 (39%), Gaps = 84/478 (17%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR---MLNVETFCI 136
            F FFK   + +  +  V  Y+++++ L +  + +I  ++V  M  K      NV T+  
Sbjct: 255 GFWFFKEMSRFK-CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTT 313

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM---- 192
           ++R Y   Q + EA+     M   G+  N   +N L+  LC+++ + K +EI + M    
Sbjct: 314 LIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDG 373

Query: 193 ---------------------------------KDRFIPDSKTYSILLEGWGKDPNLPRA 219
                                            + R  PDS TYS+L+    +  +  RA
Sbjct: 374 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 433

Query: 220 REIFREMV-------DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRPTSF 271
            E F E+        D GC P +  Y  M + LC  G+  +A  + +  M      P S 
Sbjct: 434 EEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS- 492

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y  L+  +  E   E   D  + M +   + D   Y  +I    K       ++ L+ M
Sbjct: 493 -YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM 551

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL---CEADADTYTM--------- 379
                 P +   + IL  L+ +G   E+  + + M++       D  T+T+         
Sbjct: 552 LKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQ 611

Query: 380 ---------------------MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                                ++   CQ  +L +A K+  +   KR    +   S +I+G
Sbjct: 612 DKAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISG 671

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           LC    VS++  L  +++EKG++        LR  L  EGR +  KF+ +KM  + K+
Sbjct: 672 LCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKMPEVPKQ 729



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 131/260 (50%), Gaps = 7/260 (2%)

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD---STVCRPTSFIYS 274
           +A   FR +   G   +  +Y +M+++L ++  ++ A   V S++       +     ++
Sbjct: 110 KALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFN 169

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NS 333
            L+ +YG     ++++  F  M++ G+   V  +N+L+    K  +     ++  +M ++
Sbjct: 170 SLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDT 229

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            GV P++ T NI++ G       DE +  F+ M +  C+ D  TY  ++   C+ G+++ 
Sbjct: 230 YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKI 289

Query: 393 AFKVWKYM--KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  V K M  K     P++ T++ LI G C K  ++++  LL +M+ +G++P+  T+  L
Sbjct: 290 AHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTL 349

Query: 451 RKLLIKEGREDVLKFLQEKM 470
            + L +  + D +K + E M
Sbjct: 350 IQGLCEAQKLDKIKEILEGM 369


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 184/352 (52%), Gaps = 3/352 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y+++I+S+ K++     +DL + M +K +  +V T+  ++  +  + K+ +A+ 
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAID 281

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
            FN M    +  ++  FN L++A CK   +++ + +FD M  + I P+  TY+ L++G+ 
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               + +A+ IF  M   G NPDI +Y IM++  CK  + DEA+ + K M      P   
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L+       RI  A+    +M   G+   +  YN+++ A CK ++      +L  +
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGEL 390
             KG+ PN  T +I++ GL   G+ ++A +VF   ++K    + DTYT+MI+ FC  G  
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLF 521

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +A  +   M+    IP   T+ ++I  L  K     +  LL +MI +G+RP
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 194/375 (51%), Gaps = 3/375 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I  L K+ + +   DL+  +    +  NV  +  I+    +V+ V EA   F+ M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G++ ++  ++ L+S  C    +  A ++F+ M  +   PD  T++IL+  + KD  +
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              + +F  M+  G  P+ VTY  ++D  C    V++A  I  +M      P    YS++
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +    + ++A++ F EM +  I+ DV  Y++LI    K+ +     +++  M+ +GV
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P  RT N IL+ L    + D+A  +  ++  K  + +  TY+++IK  CQ G+LE A K
Sbjct: 432 PPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARK 491

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V++ + +K    ++ T++++I G C +G+ +++  LL  M + G  P  +T+  +   L 
Sbjct: 492 VFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 456 KEGREDVLKFLQEKM 470
           K+   D+ + L  +M
Sbjct: 552 KKDENDMAEKLLREM 566



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 163/365 (44%), Gaps = 37/365 (10%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           F  I+    + +     +Y    M+  G+  NL   N L++  C+   +  A  +F   +
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K  ++PD+ T++ L++G      + +A     ++V  G + D ++YG ++  LCK G   
Sbjct: 148 KMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETR 207

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            AL +++ +D  + +P   +Y+ ++ +      + +A D F EM   GI  DV  Y+ALI
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALI 267

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--- 369
             FC   K  +   +   M  + + P+  T NI++N     G+  E   VF  M+K    
Sbjct: 268 SGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIK 327

Query: 370 ---------------------------------CEADADTYTMMIKMFCQGGELEKAFKV 396
                                               D  +Y++MI  FC+  + ++A  +
Sbjct: 328 PNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNL 387

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +K M  K  IP + T+S LI+GL   G +S +  L++ M ++G+ P+  T+  +   L K
Sbjct: 388 FKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCK 447

Query: 457 EGRED 461
             + D
Sbjct: 448 IHQVD 452



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS    T+   N ++DAV  F  + +         +N ++G+  K+  +  V  + + M 
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKME 112

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELE 391
            +G+ PN   CNI++N     G    A+ VF +++K+    D  T+T +IK  C  G+++
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQ 172

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +AF     +    F     ++  LI+GLC  G    +  LL+ +    ++P+
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 183/346 (52%), Gaps = 2/346 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF ++M +  +  KV++A   F+ ++K G+     +FN L++  CKS N+ +   + 
Sbjct: 231 NVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLK 290

Query: 190 DCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M++ R  PD  TYS L++G  K+  L  A  +F+EM D G  P+ VT+  +++  CK 
Sbjct: 291 MVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKN 350

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GRVD AL I + M +   +    +Y+ L+          +A     EM K G++ D   Y
Sbjct: 351 GRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTY 410

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             L+   CK    +    + K+M  +G+  ++     I++GL   G+  +A R  R M++
Sbjct: 411 TTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLR 470

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              + D  TYTM++  FC+ G+++  FK+ K M+    IP + T++VL+NGLC +G V +
Sbjct: 471 AGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKN 530

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           + +LL  M+  G+ P   T+  L +   K G+    + ++ +M L+
Sbjct: 531 ADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEMGLV 576



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 177/396 (44%), Gaps = 53/396 (13%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN-----------------AMRT 125
           FF +      + H+V++Y SM+  L   R  Q    L++                  + T
Sbjct: 96  FFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASILET 155

Query: 126 KRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           K  L+    F  +M  Y     V +A+  F + +K+ +      FNG     CK      
Sbjct: 156 KGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLK---IPFNG-----CK------ 201

Query: 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
                 C+ +R I  S     L              E + E++D+G  P++ T+ ++++ 
Sbjct: 202 ------CLLERMIKMSSPMVAL--------------EFYLEILDSGYPPNVYTFNVLMNR 241

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           LCK G+V +A  I   +  T  +PT+  ++ L++ Y     +E+     + ME+  +  D
Sbjct: 242 LCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPD 301

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  Y+ALI   CK  + ++   + K+M  +G+ PN  T   ++NG    G  D A  +++
Sbjct: 302 VFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQ 361

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           +M  K  +AD   Y  +I   C+GG   +A K    M  +  IP   T++ L++G C +G
Sbjct: 362 QMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEG 421

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +  +  + ++M+++GI+     F  +   L ++G+
Sbjct: 422 DLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGK 457



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 2/272 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I+ L K  Q +    L   M  + ++ N  TF  ++    +  +V+ A+  + 
Sbjct: 302 VFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQ 361

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   G+  +L  +N L+  LCK    R+A++    M  R  IPD  TY+ LL+G  K+ 
Sbjct: 362 QMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEG 421

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +L  A E+ +EMV  G   D V +  ++  LC+ G++ +A   ++ M     +P    Y+
Sbjct: 422 DLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYT 481

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++  +  +  ++       EM+ +G +  V  YN L+   CK  + KN   +L  M + 
Sbjct: 482 MVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNL 541

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           GV P+  T NI+L G    G+  +   V   M
Sbjct: 542 GVVPDDITYNILLQGHCKHGKLGDFQNVKTEM 573


>gi|449445204|ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 224/443 (50%), Gaps = 11/443 (2%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLE-KFRNAGTLAFCFFKWAEKQQNYE 94
           K + +I+ +SP + ++ AL+ +GI  + + VE+VL+  +R  G+ +  FF+W+ ++ N +
Sbjct: 75  KLMCEIIANSPSLDVEKALEDTGIHATQQDVEEVLKLSYRFPGS-SVKFFRWSGRKLNDQ 133

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           HS  A++ +I+ L K   +  MWD + +M+++ +L++ TF  +   Y    +V++A+  F
Sbjct: 134 HSPYAWNLIIDMLGKNLYFDPMWDAMKSMKSEGLLSLATFASVFSSYVVANRVKDAIMAF 193

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
            VM  YG   ++ AFN LLSA+C+  N + A E     K +  PD  +Y+I+LEGW  + 
Sbjct: 194 EVMDTYGCPHDVVAFNSLLSAICRDGNTKDADEFLQIAKRKIRPDLDSYAIVLEGWESEG 253

Query: 215 NLPRAREIFREMVDT-GCNP-DIVTYGIMVDVLCK-AGRVDEALGIVKSMDSTVCRPTSF 271
           N   A++ F EM++  G +P +   Y   + VL +    +  AL   + +   +C P   
Sbjct: 254 NTVCAKQTFGEMIEEIGWDPTNTPAYNSFLCVLLRDPNGLQRALVTFQRLKDKMCYPGFK 313

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            + + +        I+     + E+ ++     D  M+N++I   C  N      R+L +
Sbjct: 314 FFKLALDECIKCGDIKSGKYLWNEIIQSINFQPDTYMFNSMIALCCHQNDTDEARRLLDE 373

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGG 388
           M   G  PN+ T N++   L+   +  +A  +F  MIK     + A+     I+++ +  
Sbjct: 374 MICFGAFPNAETYNLLFQFLLKGRKLRDASAIFDEMIKNEFIPSHANC-NAAIRIYIESQ 432

Query: 389 ELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +   A KVWK M LK +   +  T + LI  L D+  + ++     +M+++ I+    T 
Sbjct: 433 DPNGAIKVWKCM-LKNYDSDLEETGNFLIVRLQDQKRLPEAVKYAHEMVDRAIKLKDSTL 491

Query: 448 GKLRKLLIKEGREDVLKFLQEKM 470
            KL+  L +  +E +   L  K+
Sbjct: 492 AKLKHSLFEVRKESMYDELMVKL 514


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 200/418 (47%), Gaps = 12/418 (2%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL 107
           ++   LD  G++ + E+   +L        +      + E   Q  E  V  ++++I++L
Sbjct: 147 LVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDAL 206

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
            + RQ +    ++  M +  +   ET F  +M  +     +E A+     M + G +   
Sbjct: 207 CRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTS 266

Query: 167 AAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
              N L++  CK   V  A     QEI     D F PD  T+S  + G  ++ ++  A +
Sbjct: 267 VTVNVLINGYCKLGRVGDALGYIQQEI----ADGFEPDRVTFSTFVNGLCQNGHVDHALK 322

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +   M+  GC PD+ TY  +++ LC  G ++EA GIV  M  + C P +  ++ L+    
Sbjct: 323 VLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALC 382

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            EN++E+A+D   E+   G+  +V  +N LI A CK        R+ ++M S G  P+  
Sbjct: 383 TENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442

Query: 342 TCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T NI+++ L   G+  +A  + + M +  C     TY  +I   C+   +E+A +V+  M
Sbjct: 443 TYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM 502

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +     +  TF+ LI+GLC+   + D+  L++ MI +G++P+  T+  +     K+G
Sbjct: 503 DVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQG 560



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 208/463 (44%), Gaps = 41/463 (8%)

Query: 49  VLDTALDQS-GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIES 106
           +L++AL +  G+  S ++ E+++ K   AG          E +++ +E  +    S I S
Sbjct: 75  MLNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGS 134

Query: 107 LAKIRQYQIMWDLVNAMRT--KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
            A+++ +   +DLV+          N E +  ++   A   K++     +  M   G+  
Sbjct: 135 YARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEP 194

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIF 223
           ++  FN ++ ALC+++  R A  + + M      PD  T++ L+EG+ ++ ++  A  + 
Sbjct: 195 DVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLK 254

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS----------------------- 260
             M + GC+P  VT  ++++  CK GRV +ALG ++                        
Sbjct: 255 ARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN 314

Query: 261 ------------MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
                       M    C P  + YS +++       +E+A     +M  +G L D   +
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N LI A C  N+ +    + +++  KG++PN  T NI++N L   G+   A R+F  M  
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS 434

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C  D  TY ++I   C  G+L KA  + K M++     S  T++ +I+GLC +  + +
Sbjct: 435 SGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEE 494

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  + + M   GI  +  TF  L   L    R D    L ++M
Sbjct: 495 AEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQM 537



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 165/343 (48%), Gaps = 4/343 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++++I +L    Q +   DL   +  K +  NV TF I++    +V     AV  F  M+
Sbjct: 374 FNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMK 433

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLP 217
             G T +   +N L+  LC S  + KA ++   M+    P S  TY+ +++G  K   + 
Sbjct: 434 SSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIE 493

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+F +M  TG   + +T+  ++D LC A R+D+A  +V  M S   +P +  Y+ ++
Sbjct: 494 EAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSIL 553

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  +  I  A D    M  NG   DV  Y  LI   CKA + +   ++L+ M  KG+ 
Sbjct: 554 THYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMK 613

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGG-ELEKAFK 395
           P  +  N ++  L       +A  +FR M ++    DA TY ++ +  C+GG  +++AF 
Sbjct: 614 PTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFD 673

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
               M    FIP   +F +L  GL + G+       +E ++EK
Sbjct: 674 FLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIVEK 716



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 163/333 (48%), Gaps = 6/333 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++       ++EEA    N M   G   +   FN L+ ALC    + +A ++ 
Sbjct: 335 DVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLA 394

Query: 190 DCMKDRFI-PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
             +  + + P+  T++IL+    K  DP+L  A  +F EM  +GC PD VTY I++D LC
Sbjct: 395 RELTVKGLSPNVYTFNILINALCKVGDPHL--AVRLFEEMKSSGCTPDEVTYNILIDNLC 452

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            +G++ +AL ++K M+ + C  ++  Y+ ++       RIE+A + F +M+  GI  +  
Sbjct: 453 SSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAI 512

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   C A +  +   ++  M S+G+ PN+ T N IL     +G   +A  + + M
Sbjct: 513 TFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTM 572

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D  TY  +I   C+    + A K+ + M++K   P+   ++ +I  L      
Sbjct: 573 TANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNG 632

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            D+  L  +M E G  P   T+  + + L + G
Sbjct: 633 RDALSLFREMTEVGGPPDAFTYKIVFRGLCRGG 665



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 163/375 (43%), Gaps = 34/375 (9%)

Query: 9   NKMI-SGCISFLRRYNS-------SEPSTEALDAAKSISKIMLSSPKV----VLDTALDQ 56
           N+M+ SGC+     +N+            EALD A+ ++   LS P V    +L  AL +
Sbjct: 360 NQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLS-PNVYTFNILINALCK 418

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
            G    P +   + E+ +++G                      Y+ +I++L    +    
Sbjct: 419 VG---DPHLAVRLFEEMKSSGCTP---------------DEVTYNILIDNLCSSGKLAKA 460

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            DL+  M       +  T+  I+    + +++EEA   F+ M   G+ +N   FN L+  
Sbjct: 461 LDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDG 520

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LC ++ +  A E+ D M  +   P++ TY+ +L  + K  N+ +A +I + M   G   D
Sbjct: 521 LCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVD 580

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTY  +++ LCKA R   AL +++ M     +PT   Y+ ++ +    N   DA+  F 
Sbjct: 581 VVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFR 640

Query: 295 EMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           EM + G   D   Y  +    C+     K  +  L +M   G  P   +  ++  GL+  
Sbjct: 641 EMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNL 700

Query: 354 GETDEAYRVFRRMIK 368
           G  D   R    +++
Sbjct: 701 GMDDYLIRAIELIVE 715


>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
 gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 205/436 (47%), Gaps = 47/436 (10%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQ--SGIRVSPEIVEDVLEKFRNAGTLAF 81
           S   ST  L AAK+  ++  S  +++L  A +Q    I VS ++V+ +L +F++    A 
Sbjct: 1   SRNQSTVNLVAAKA--RVGSSPDEILLSLADEQVCDNIEVSNDLVDKLLLRFKDDWKSAL 58

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKY 141
             F+WA  +  Y+H   AY  M++ L K++Q   M +L+  M    ++ + T    MR++
Sbjct: 59  GVFRWAGLRPGYKHRPEAYDMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRF 118

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
           +   K E+AV  F+ +  +G+ +N  + N LL  LCK   V +A+ IF  +K   +P++ 
Sbjct: 119 SGAGKWEDAVRMFDELGTFGLEKNAESMNLLLDTLCKEGKVEQARAIFLELKSHILPNAH 178

Query: 202 TYSILLEGWGK-----------------------------------DPNLPRAREIFREM 226
           T++I + GW K                                     N  +  E+  EM
Sbjct: 179 TFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEM 238

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              GC P++VTY  ++  L K+   +EAL + + M S  C+P +  ++ L++  G   R 
Sbjct: 239 EAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRF 298

Query: 287 EDAVDTF-LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---NSRT 342
           ++AVD F  EM   G+  D + YN++I   C          +L++M +   AP   + +T
Sbjct: 299 QEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETS--APFKLDGQT 356

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQGGELEKAFKVWKYM 400
              +L   +  G+ +   ++   M+K  +   D   Y ++I   C+  + + A+ +++ M
Sbjct: 357 FYPLLKSCLRTGDMNLLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEM 416

Query: 401 KLKRFIPSMHTFSVLI 416
             K  +P   T  +L+
Sbjct: 417 ISKDIVPKYQTCHMLL 432



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 140/336 (41%), Gaps = 53/336 (15%)

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           ED +  F   GT               E +  + + ++++L K  + +    +   +++ 
Sbjct: 125 EDAVRMFDELGTFGL------------EKNAESMNLLLDTLCKEGKVEQARAIFLELKSH 172

Query: 127 RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
            + N  TF I +  + +   V+EA +T   M+ +     + +++ ++   C+  N  K  
Sbjct: 173 ILPNAHTFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVY 232

Query: 187 EIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           E+ D M+ +  P +  TY+ ++    K  N   A ++ + M   GC PD   +  ++ +L
Sbjct: 233 ELLDEMEAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYIL 292

Query: 246 CKAGRVDEALGIV-KSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME------ 297
            +AGR  EA+ +  K M ++ V R TS  Y+ ++        +  A+    EME      
Sbjct: 293 GRAGRFQEAVDVFEKEMPNAGVSRDTS-TYNSMIAMLCHHGHVSKALSLLREMETSAPFK 351

Query: 298 -------------------------------KNGILADVAMYNALIGAFCKANKFKNVYR 326
                                          K+ +  D + Y  LI   C+ANK +  Y 
Sbjct: 352 LDGQTFYPLLKSCLRTGDMNLLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYH 411

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
           + ++M SK + P  +TC+++L  +  +   D A ++
Sbjct: 412 LFEEMISKDIVPKYQTCHMLLEEVKLKSMYDTAEKI 447


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 3/345 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           SV  + ++I+   +        ++ + MR K ++  V  + I++R      K+EEA    
Sbjct: 181 SVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMH 240

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
             M++ GV  N+  +N L+   CK  N ++A  ++ D + +  +PD  T+ IL++G  K 
Sbjct: 241 RAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKF 300

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  AR +F  M+     P+I  Y  ++D  CK G V EA+ +   ++     P  F Y
Sbjct: 301 GEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTY 360

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+L+      +R E+A + F +M K GILA+   YN+LI   CK  K      +   M  
Sbjct: 361 SILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTE 420

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
            GV PN  T + +++G         A  ++  M IK    D  TYT MI   C+ G +++
Sbjct: 421 NGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKE 480

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           A K++  M      P+ +T S L++GLC  G +SD+  L  + IE
Sbjct: 481 ALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIE 525



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 207/421 (49%), Gaps = 21/421 (4%)

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
           E+VE+ L  +   G                  +++A + ++  L K  +++++W +   M
Sbjct: 129 ELVEEALSMYHKVGAAL---------------TIQACNVLLYVLVKTGRFELLWRIYEEM 173

Query: 124 RTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
            +  +  +V TF  ++    R   +  A   F+ M+  G+   +  +  L+  LC    +
Sbjct: 174 ISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKI 233

Query: 183 RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            +A+ +   M++  + P+  TY+ L++G+ K  N  +A  ++++M+  G  PD+VT+GI+
Sbjct: 234 EEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGIL 293

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +D LCK G +  A  +  +M      P   +Y+ L+  Y     + +A+  FLE+E+  +
Sbjct: 294 IDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEV 353

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             DV  Y+ LI   C  ++ +    + + M  +G+  NS T N +++G    G+ D+A  
Sbjct: 354 SPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALE 413

Query: 362 VFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +  +M +   E +  T++ +I  +C+   L+ A  ++  M +K   P + T++ +I+G C
Sbjct: 414 ICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHC 473

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPLC 479
             G + ++  L  DM++ GI P+  T   L   L K+G+  D L+   EK+    + P C
Sbjct: 474 KYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEF--QTPRC 531

Query: 480 D 480
           +
Sbjct: 532 N 532



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 169/365 (46%), Gaps = 20/365 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++++   K+   +    L   M  + ++ +V TF I++    +  +++ A   F
Sbjct: 251 NVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLF 310

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGK 212
             M K+ VT N+A +N L+ A CK  +V +A  +F  + +RF   PD  TYSIL+ G   
Sbjct: 311 VNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLEL-ERFEVSPDVFTYSILIRGLCS 369

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                 A  IF +M   G   + VTY  ++D  CK G++D+AL I   M      P    
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVIT 429

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           +S L+  Y     ++ A+  + EM    +  DV  Y A+I   CK    K   ++  DM 
Sbjct: 430 FSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDML 489

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----CEADAD----------TYT 378
             G+ PN  T + +L+GL   G+  +A  +F   I+     C  DA            YT
Sbjct: 490 DNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYT 549

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   CQ G+  KA K++  M+     P    + V++ GL     +    +L  DM++ 
Sbjct: 550 ALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI--LMMLHADMLKF 607

Query: 439 GIRPS 443
           G+ P+
Sbjct: 608 GVIPN 612



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 174/371 (46%), Gaps = 19/371 (5%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           E +++ Y ++I  L   +       L+N +    + + + +      ++ + +++ + +T
Sbjct: 55  EKNIQLYSAIIHVLVGSKLLSHARYLLNDLVQNLVKSHKPYHACQLAFSELSRLKSSKFT 114

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
            NV            +  L+  LCK + V +A  ++   K       +  ++LL    K 
Sbjct: 115 PNV------------YGELIIVLCKMELVEEALSMYH--KVGAALTIQACNVLLYVLVKT 160

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                   I+ EM+  G +P ++T+G ++D  C+ G +  A  +   M      PT  +Y
Sbjct: 161 GRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVY 220

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L+     +N+IE+A      M + G+  +V  YN L+  +CK    K   R+ +DM  
Sbjct: 221 TILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLG 280

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +G+ P+  T  I+++GL   GE   A  +F  MIK     +   Y  +I  +C+ G++ +
Sbjct: 281 EGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSE 340

Query: 393 AFKVWKYMKLKRF--IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  +  +++L+RF   P + T+S+LI GLC      ++  + E M ++GI  +  T+  L
Sbjct: 341 AMAL--FLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSL 398

Query: 451 RKLLIKEGRED 461
                KEG+ D
Sbjct: 399 IDGCCKEGKMD 409


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 172/327 (52%), Gaps = 12/327 (3%)

Query: 130 NVETFCIIMRKY-ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +VE    I+RK+ +RV K+E A      +Q+ GV      F  LL ALCK+ +V++A  +
Sbjct: 57  DVEKVYRILRKFHSRVPKLELA------LQESGVAH---VFGCLLDALCKNGSVKEAASL 107

Query: 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           F+ M+ RF P  K ++ LL GW ++  L  A+ +  ++ + G  PDIV Y  ++     A
Sbjct: 108 FEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAA 167

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ +A  ++K M    C P    ++ L+     + ++E+A+  F EM+  G  AD   Y
Sbjct: 168 GKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTY 227

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             LI  FCK  K    Y +L +M  +G  PN  T   I+     + E +E   +   M K
Sbjct: 228 TTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRK 287

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  D + Y ++I++ C+ GE+++  +VW  M+     P + TF ++I+G   +  + +
Sbjct: 288 IGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVE 347

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +C   ++M+ +G+  S   +G L++LL
Sbjct: 348 ACEFFKEMVGRGLL-SAPQYGTLKELL 373



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 173/384 (45%), Gaps = 4/384 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
              +  ++++L K    +    L   MR +    ++ F  ++  + R  K+ EA Y    
Sbjct: 85  AHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQ 144

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           +++ G   ++  +N LL+    +  +  A ++   M+ +   P+  +++ L++       
Sbjct: 145 IREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKK 204

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +F EM   GC  D VTY  ++   CK G++ +   ++ +M      P    Y  
Sbjct: 205 MEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLH 264

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++  +  +  +E+ ++   EM K G   D+ +YN +I   CK  + K   RV  +M + G
Sbjct: 265 IMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATG 324

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELEK 392
           ++P   T  I+++G + +    EA   F+ M+    L      T   ++    +  +LE 
Sbjct: 325 LSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEM 384

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           +  VW  +  K    +++ +++ I+ L   G V ++C    DM++ G+ P  +TF KL +
Sbjct: 385 SKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMR 444

Query: 453 LLIKEGREDVLKFLQEKMNLLVKE 476
            L K     +   + EK+  +  E
Sbjct: 445 GLRKLYNRQIAAEITEKVRKMAAE 468


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 174/337 (51%), Gaps = 8/337 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV ++  ++    +      AV  F  M++     N+  +N ++ +LCK + V +A E  
Sbjct: 200 NVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFL 259

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M DR IP D  TY+ +L G+     L  A  +F+EMV     PD VT+ I+VD LCK 
Sbjct: 260 SEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKE 319

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V EA  + ++M      P ++ Y+ L+  Y + N++++A+     M   G   +++ Y
Sbjct: 320 GMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSY 379

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  +CK+ +     R+L +M+ K + P++ T + ++ GL   G   EA  +F+ M  
Sbjct: 380 NILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEM-- 437

Query: 369 LCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
            C +    D   Y++++  FC+ G L++A K+ K M  +R  P++  +++LI G+   G 
Sbjct: 438 -CSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGK 496

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +  +  L   +   GIRP   T+  + K L+KEG  D
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSD 533



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 187/380 (49%), Gaps = 3/380 (0%)

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           H+V + + +I  L ++        ++  M +     +  TF  ++       K++EAV  
Sbjct: 129 HNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGL 188

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK 212
           FN M   G   N+ ++N +++ LCK+ N   A  +F  M ++R  P+  TY+ +++   K
Sbjct: 189 FNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK 248

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           D  +  A E   EMVD G  PD+VTY  ++   C  G+++EA  + K M      P +  
Sbjct: 249 DRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVT 308

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           +++LV     E  + +A      M + G   +   YNAL+  +C  N+     +VL  M 
Sbjct: 309 FNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMI 368

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            KG APN  + NI++NG       +EA R+   M  K    D  TY+ +++  CQ G   
Sbjct: 369 GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPR 428

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A  ++K M     +P +  +S+L++G C  G + ++  LL++M E+ I+P+   +  L 
Sbjct: 429 EALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILI 488

Query: 452 KLLIKEGREDVLKFLQEKMN 471
           + +   G+ +V K L  K++
Sbjct: 489 RGMFIAGKLEVAKELFSKLS 508



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 174/342 (50%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V  F   +   A+ ++   AV   N M  +GVT N+ + N L++ LC+  +V  A  + 
Sbjct: 95  SVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVM 154

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M K    PD+ T++ L+ G   +  +  A  +F EMV +G  P++++Y  +++ LCK 
Sbjct: 155 GKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKN 214

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G    A+ + + M+    +P    Y+ ++ +   +  + +AV+   EM   GI  DV  Y
Sbjct: 215 GNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTY 274

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N ++  FC   +     R+ K+M  + V P++ T NI+++GL   G   EA  V   M  
Sbjct: 275 NTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTE 334

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  E +A TY  ++  +C   ++++A KV   M  K   P++ ++++LING C    +++
Sbjct: 335 KGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNE 394

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  LL +M EK + P   T+  L + L + GR  + L   +E
Sbjct: 395 AKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKE 436



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 184/368 (50%), Gaps = 3/368 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           +Q   + +V  Y+++I+SL K R      + ++ M  + +  +V T+  I+  +  + ++
Sbjct: 228 EQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQL 287

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA   F  M    V  +   FN L+  LCK   V +A+ + + M ++   P++ TY+ L
Sbjct: 288 NEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNAL 347

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+     +  A ++   M+  GC P++ +Y I+++  CK+ R++EA  ++  M     
Sbjct: 348 MDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL 407

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  YS L+       R  +A++ F EM  +G+L D+  Y+ L+  FCK        +
Sbjct: 408 TPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALK 467

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +LK+M+ + + PN     I++ G+   G+ + A  +F ++       D  TY +MIK   
Sbjct: 468 LLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLL 527

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G  ++A++ ++ M+   F+P   +++V+I G       S +  L+++M+ K       
Sbjct: 528 KEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSS 587

Query: 446 TFGKLRKL 453
           TF  L  L
Sbjct: 588 TFQMLLDL 595



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 119/274 (43%), Gaps = 36/274 (13%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           D ++  A   F  MV     P +V +G  +  + K  +   A+ +   MD        + 
Sbjct: 74  DISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYS 133

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
            +VL++     + ++ AV    +M K GI  D   +N LI   C   K K    +  +M 
Sbjct: 134 LNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMV 193

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCE----- 371
             G  PN  + N ++NGL   G T  A RVFR+M +                LC+     
Sbjct: 194 WSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVN 253

Query: 372 ---------------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
                           D  TY  ++  FC  G+L +A +++K M  +  +P   TF++L+
Sbjct: 254 EAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILV 313

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +GLC +G+VS++  + E M EKG  P+  T+  L
Sbjct: 314 DGLCKEGMVSEARCVSETMTEKGAEPNAYTYNAL 347


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 213/432 (49%), Gaps = 32/432 (7%)

Query: 18  FLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
           FL  ++ S P    +   +++ K     P   ++ AL+  GI  +  +V  VL++ R+  
Sbjct: 55  FLHSHHDSPPLASFI---QNLLKFRRDKPTEQIEQALNLIGIHPNNNLVLQVLQRHRSDW 111

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCI 136
             AF FFKW  K  NY  S   Y+ +I  L K++ ++ +  +++ M + K  +N ETFCI
Sbjct: 112 KPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQVLDEMSQRKEFINEETFCI 171

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNL--AAFNGLLSALCKSKNVRKAQEIF--DCM 192
           ++R++    K+EEA+  F   +++G+   L   AF  LL  +C+ K++ +A+ +F  +  
Sbjct: 172 LIRRFVAAHKLEEAINIFYRREEFGLDNELDSKAFRTLLMWMCRYKHIEEAETLFHRNLN 231

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K RF  D KT++++L GW    N   A+ +++         DI+ Y        K   + 
Sbjct: 232 KFRFCRDIKTWNVILNGWCVLGNTHEAKRLWK---------DIIAY--------KCKEIG 274

Query: 253 EALGIVK-SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
               +V+  ++   C+P   I++ L+     + RI +A+  F +M++   L +VA YN+L
Sbjct: 275 NCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKERDCLPNVATYNSL 334

Query: 312 IGAFCKANKFKNVYRVLKDMN--SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
           I    K  + + VY +++DM   S    PN  T + +L  L      +E   V  RM + 
Sbjct: 335 IKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTYSYLLQSLKA---PEEVPAVLERMERN 391

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            C    D   ++++++ +  +L+   K W  M+     P   +++++I+G  + G   D+
Sbjct: 392 GCAMSDDICNLILRLYMKWDDLDGLRKTWDEMERNGLGPDRRSYTIMIHGHYENGRTKDA 451

Query: 429 CVLLEDMIEKGI 440
               ++M  KGI
Sbjct: 452 MRYFQEMTSKGI 463



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 20/242 (8%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P    Y  ++++L K    +E   ++  M           + +L+  +   +++E+A++ 
Sbjct: 129 PSCEVYNEIINILGKMKCFEELHQVLDEMSQRKEFINEETFCILIRRFVAAHKLEEAINI 188

Query: 293 FLEMEKNGI--LADVAMYNALIGAFCKANKFKNVYRVL-KDMNSKGVAPNSRTCNIILNG 349
           F   E+ G+    D   +  L+   C+    +    +  +++N      + +T N+ILNG
Sbjct: 189 FYRREEFGLDNELDSKAFRTLLMWMCRYKHIEEAETLFHRNLNKFRFCRDIKTWNVILNG 248

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               G T EA R+++ +I   C+   + + ++     Q    E++ K           P 
Sbjct: 249 WCVLGNTHEAKRLWKDIIAYKCKEIGNCFEVV-----QWDVEEESCK-----------PD 292

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           +  F+ LI+GLC K  + ++  +  DM E+   P+  T+  L K L K  R + +  L E
Sbjct: 293 VVIFNCLIDGLCFKKRIPEALQVFHDMKERDCLPNVATYNSLIKHLFKIRRMEKVYELVE 352

Query: 469 KM 470
            M
Sbjct: 353 DM 354


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 117 WDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
            DL  AM   R +    NV T+  ++  +AR +K+EEA+     M++ G   NL  +N L
Sbjct: 39  GDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVL 98

Query: 173 LSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           + ALCK   V  AQ++   M +  F P+  T++ L++G+ K  N+  AR++   MV  G 
Sbjct: 99  VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 158

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P++VTY  ++D LCK+ +  EA  +++ M ++   P +F YS L+H     ++IE+A  
Sbjct: 159 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQ 218

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
               M  +G   DV +Y+++I AFCK+ K     + L++M  +  +P+  T N +++GL 
Sbjct: 219 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 278

Query: 352 GRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             G+  EA  +  +M +  +   D  TY+ +I   C+   L +A K+   M      P +
Sbjct: 279 KLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDV 338

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            T++ +I+GLC  G + ++  LL+ M   G  P+  T+  L   L K  + D  + + E+
Sbjct: 339 VTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEE 398

Query: 470 M 470
           M
Sbjct: 399 M 399



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 189/446 (42%), Gaps = 57/446 (12%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSP-EIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           LD A    + M   P VV  TAL  +  R    E    +LE+ R  G             
Sbjct: 41  LDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGC------------ 88

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
                ++  Y+ ++++L K+       D+V  M       NV TF  ++  + +   V++
Sbjct: 89  ---PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 145

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A     +M   G+  N+  ++ L+  LCKS+   +A+E+ + MK   + PD+ TYS L+ 
Sbjct: 146 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIH 205

Query: 209 GWGKDPNLPRAREIFREMVDTGC-----------------------------------NP 233
           G  K   +  A ++ R M  +GC                                   +P
Sbjct: 206 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 265

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           D+VTY  ++D LCK G++ EA  I+  M +S    P    YS +++     + + +A   
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M K G   DV  Y  +I   CK  + +    +L+ M   G APN  T   +++GL  
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPSM 409
             + DEA RV   M    C  +  TY  M+   C  G +++A ++ + MK  R    P  
Sbjct: 386 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 445

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDM 435
            T+  ++N L    +V ++  LLE M
Sbjct: 446 ATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 5/256 (1%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +L  A E+  EM   G  PD  T+  ++  +  AG +D A+  ++SM    C P    Y+
Sbjct: 5   DLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG---CDPNVVTYT 61

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +    ++E+A+    EM + G   ++  YN L+ A CK +       V+K M   
Sbjct: 62  ALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG 121

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G APN  T N +++G   RG  D+A ++   M+ K    +  TY+ +I   C+  +  +A
Sbjct: 122 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +V + MK     P   T+S LI+GLC    + ++  +L  M   G  P    +  +   
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 454 LIKEGR-EDVLKFLQE 468
             K G+  +  K LQE
Sbjct: 242 FCKSGKLLEAQKTLQE 257



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 2/146 (1%)

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
           C A        +L++M S G AP++ T   I+  +   G+ D A    R M   C+ +  
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG--CDPNVV 58

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TYT +I  F +  +LE+A K+ + M+ +   P++ T++VL++ LC   +V  +  +++ M
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           IE G  P+  TF  L     K G  D
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVD 144


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 182/363 (50%), Gaps = 3/363 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++++ L K  Q+     L+  MR    + +V T+  ++    +  ++ EA   F  M+
Sbjct: 82  YNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMR 141

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLP 217
           + G   +   +N L+  L K    +KA E+ + M+    P D  TYS L+ G GKD    
Sbjct: 142 ERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETV 201

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A ++F+EM   G  PD +T+  ++D L KAGRVD+AL ++  M     +P    Y+ L+
Sbjct: 202 KAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI 261

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +G    + +A +   EM++NG   DV  Y+ LI    KA++     +VLK M  +G  
Sbjct: 262 AGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCP 321

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P++ T N ++NGL   G  ++A R+F RM  K C  D  TY+ +I    +   +E A  +
Sbjct: 322 PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVL 381

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ M+     P + T+  +I  L   G V D+  L  +M  KG+ P   T+      L +
Sbjct: 382 FEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGR 441

Query: 457 EGR 459
            GR
Sbjct: 442 GGR 444



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 203/395 (51%), Gaps = 4/395 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           AF  F+  +++     S+  + +++++L K  +     +L++ M+ + +   V T+  ++
Sbjct: 203 AFKLFQEMKRRGRKPDSI-TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI 261

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI 197
             + +V  + EA    + M++ G   ++  ++ L++ L K+  + +A ++   M K+   
Sbjct: 262 AGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCP 321

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ TY+ L+ G GK   L  A  +F  M   GCNPD+VTY  ++  L KA RV+ A  +
Sbjct: 322 PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVL 381

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + M+S   +P  F Y  ++   G   +++DA   F EM   G+  DV  YNA + +  +
Sbjct: 382 FEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGR 441

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
             +FK   ++ +DM   G+ P+  T + +L GL    E D+A  + + +I+  C  D+  
Sbjct: 442 GGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLK 501

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           +   +++    G +++A ++ ++   K   P   +++ LI+ L   G VS++   LED+ 
Sbjct: 502 FDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLK 561

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           E+G +P   ++  L   L + G+ D    L E+M+
Sbjct: 562 EQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMS 596



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 188/387 (48%), Gaps = 7/387 (1%)

Query: 96  SVRAYHSMIESLAKIRQ---YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           +V  Y+S++ +LAK  Q    Q++++ + A   K   +V ++  ++    R  K E A+ 
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKA--AKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWG 211
               MQ  G   NL  +N L+  L K+    +A  +   M+D   +PD +TY+ L+   G
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   L  A  +F EM + GC PD  TY  ++  L K GR  +A+ +++ M+   C P   
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L+   G +     A   F EM++ G   D   + AL+ A  KA +  +   +L +M
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGEL 390
             +GV P   T N ++ G    G+  EAY +   M +  C+ D  TY+ +I    +  +L
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQL 305

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++A +V K M+ +   P   T++ LINGL   G+++D+  L + M  KG  P   T+  L
Sbjct: 306 DEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTL 365

Query: 451 RKLLIKEGREDVLKFLQEKMNLLVKEP 477
              L K  R +    L E+M  +  +P
Sbjct: 366 ITALGKAARVESACVLFEEMESVGIQP 392



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 1/260 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           MK    P+  TY+ LL    K      A+ +F E+      PD+V+Y  +++ L +AG+ 
Sbjct: 1   MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           + AL +V  M +  C+P  + Y+ LV   G   + ++A+    EM  NG + DV  YN L
Sbjct: 61  EAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCL 120

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I    KA +    + +  +M  +G  P++ T N ++ GL   G + +A  +   M +  C
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGC 180

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY+ +I    + GE  KAFK+++ MK +   P   TF+ L++ L   G V D+  
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240

Query: 431 LLEDMIEKGIRPSGETFGKL 450
           LL++M E+G++P   T+  L
Sbjct: 241 LLDEMKERGVKPGVVTYNAL 260



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 126/271 (46%), Gaps = 2/271 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I  L K         L + M++K    +V T+  ++    +  +VE A   F  M+
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G+  +L  +  +++ L K+  V  A  +F  M+ + + PD  TY+  L   G+     
Sbjct: 387 SVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK 446

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            AR+IF +M ++G  PD+ TY  ++  L K   VD+A G++K +    C   S  +   +
Sbjct: 447 EARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   +++A +        G+    + YNALI A  KA +    +  L+D+  +G  
Sbjct: 507 EILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK 566

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           P+  + + +++ L   G+ D A+ +   M K
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSK 597



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 132/256 (51%), Gaps = 2/256 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +     V  Y ++I +L K  + +    L   M +  +  ++ T+C I+    +  +V
Sbjct: 351 KSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQV 410

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           ++A   F+ M+  G++ ++  +N  L++L +    ++A++IF+ MK+   +PD  TY  L
Sbjct: 411 DDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDAL 470

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L G  K   +  A  + +E+++ GC  D + +   +++L   G VDEA  +++  +S   
Sbjct: 471 LLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGL 530

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  Y+ L+       R+ +A +T  ++++ G   D+  Y++LI A  +  +    + 
Sbjct: 531 WPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFE 590

Query: 327 VLKDMNSKGVAPNSRT 342
           +L++M+ +G+  + R+
Sbjct: 591 LLEEMSKRGLKLSPRS 606


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 201/378 (53%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRKYARVQKVEEAVYTF 154
           +V  ++ +  ++AK +QY+++  L   M +K + + + T  I++  + R +K+  A  T 
Sbjct: 87  TVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTM 146

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             + K G   +   FN LL+ LC    V +A E+ D M +    P   T + L+ G   +
Sbjct: 147 GKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLN 206

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   MV+TG  P+ VTYG +++V+CK+G+   A+ +++ M+    +  +  Y
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+++     +  +++A + F EME  G  AD+  YN LIG FC A ++ +  ++L+DM  
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEK 392
           + ++PN  T +++++  +  G+  EA ++ + M++   A +  TY  +I  FC+   LE+
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M  K   P + TF++LING C    + D   L  +M  +G+  +  T+  L +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446

Query: 453 LLIKEGREDVLKFLQEKM 470
              + G+ +V K L ++M
Sbjct: 447 GFCQSGKLEVAKKLFQEM 464



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 187/364 (51%), Gaps = 3/364 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +  ++ +   Y  ++  + K  Q  +  +L+  M  + + L+   + II+    +   ++
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A   FN M+  G   ++  +N L+   C +       ++  D +K +  P+  T+S+L+
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLI 340

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A ++ +EM+  G  P+ +TY  ++D  CK  R++EA+ +V  M S  C 
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCD 400

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    +++L++ Y   NRI+D ++ F EM   G++A+   YN L+  FC++ K +   ++
Sbjct: 401 PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M S+ V P+  +  I+L+GL   GE ++A  +F ++ K   E D   Y ++I   C 
Sbjct: 461 FQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCN 520

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             +++ A+ ++  + LK        ++++I+ LC K  +S + +L   M E+G  P   T
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELT 580

Query: 447 FGKL 450
           +  L
Sbjct: 581 YNIL 584



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 37/339 (10%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYS 204
           KV +AV   + M + G   N   +  +L+ +CKS     A E+   M++R I  D+  YS
Sbjct: 208 KVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+++G  KD +L  A  +F EM   G   DI+TY  ++   C AGR D+   +++ M   
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    +SVL+ ++  E ++ +A     EM + GI  +   YN+LI  FCK N+ +  
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
            +++  M SKG  P+  T NI++NG       D+   +FR M ++   A+  TY  +++ 
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447

Query: 384 FCQGG-----------------------------------ELEKAFKVWKYMKLKRFIPS 408
           FCQ G                                   ELEKA +++  ++  +    
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +  + ++I+G+C+   V D+  L   +  KG++     +
Sbjct: 508 IGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 150/302 (49%), Gaps = 4/302 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  +  +I+S  K  + +    L+  M  + +  N  T+  ++  + +  ++EEA+   
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV 391

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           ++M   G   ++  FN L++  CK+  +    E+F  M  R  I ++ TY+ L++G+ + 
Sbjct: 392 DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQS 451

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A+++F+EMV     PDIV+Y I++D LC  G +++AL I   ++ +       IY
Sbjct: 452 GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            +++H     ++++DA D F  +   G+  D   YN +I   C+ +       + + M  
Sbjct: 512 MIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE 571

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           +G AP+  T NI++   +G  +   A  +   M      AD  T  M+I M    GEL+K
Sbjct: 572 EGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML-SSGELDK 630

Query: 393 AF 394
           +F
Sbjct: 631 SF 632



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 141/312 (45%), Gaps = 8/312 (2%)

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
           +NL+  + L S L   K         D ++ R +P    ++ L     K         + 
Sbjct: 52  RNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALC 111

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
           ++M   G    I T  IM++  C+  ++  A   +  +      P + I++ L++   +E
Sbjct: 112 KQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE 171

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            R+ +A++    M + G    +   N L+   C   K  +   ++  M   G  PN  T 
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231

Query: 344 NIILNGLIGRGETDEAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
             +LN +   G+T  A  + R+M    IKL   DA  Y+++I   C+ G L+ AF ++  
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKL---DAVKYSIIIDGLCKDGSLDNAFNLFNE 288

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M++K F   + T++ LI G C+ G   D   LL DMI++ I P+  TF  L    +KEG+
Sbjct: 289 MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK 348

Query: 460 -EDVLKFLQEKM 470
             +  + L+E M
Sbjct: 349 LREADQLLKEMM 360


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 174/341 (51%), Gaps = 8/341 (2%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++R   R   +  A+   ++M + G   +   FN L+   C++  V  A+++FD M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R F  D  +Y+ L+EG+ +   +  A E+F EM      PD+  Y  +V  LCKAGR 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +E L +++ M     RP++  Y+ +V     E + ++A +   EM + G+   V    A+
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           I A+CK  +  +  RVL+ M  +G  PN  T N ++ G    G+  +A  +  +M ++C 
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM-RVCG 247

Query: 371 -EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              DA TY ++I+  C  G +E AF++ + M+    I   +T++ LIN LC  G    +C
Sbjct: 248 VNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQAC 307

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            L + +  +GI+P+  TF  L   L K G+ D+     EKM
Sbjct: 308 SLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKM 348



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 175/386 (45%), Gaps = 18/386 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEEAV 151
            Y+++I SL +        DL +A+R   ++       +  TF  ++  Y R  +V+ A 
Sbjct: 13  TYNAVIRSLCRRA------DLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVAR 66

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211
             F+ M   G  Q++ ++  L+   C++  + +A E+F  M     PD   Y+ L++G  
Sbjct: 67  DLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ---PDMHMYAALVKGLC 123

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K         + R M + G  P    Y  +VD  C   +  EA  +++ M      P   
Sbjct: 124 KAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVV 183

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
             + +++ Y  E R+ DA+     M+  G   +V  YNAL+  FC   K      +L  M
Sbjct: 184 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGEL 390
              GV P++ T N+++ G    G  + A+R+ R M      AD  TY  +I   C+ G  
Sbjct: 244 RVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++A  ++  ++ +   P+  TF+ LINGLC  G V  +   LE M+  G  P   T+   
Sbjct: 304 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSF 363

Query: 451 RKLLIK-EGREDVLKFLQEKMNLLVK 475
            + L K +G ++ L F+ E +   VK
Sbjct: 364 IEHLCKMKGSQEGLSFIGEMLQKDVK 389



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 175/390 (44%), Gaps = 17/390 (4%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +   V +Y ++IE   +  +     +L   M    M     +  +++   +  + EE 
Sbjct: 75  RGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDM---HMYAALVKGLCKAGRGEEG 131

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +     M++ G   +  A+  ++   C  +  ++A+E+   M ++   P   T + ++  
Sbjct: 132 LLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 191

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K+  +  A  +   M   GC P++ TY  +V   C  G+V +A+ ++  M      P 
Sbjct: 192 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPD 251

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           +  Y++L+    ++  IE A      ME +G++AD   YNALI A CK  +      +  
Sbjct: 252 AVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFD 311

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            + ++G+ PN+ T N ++NGL   G+ D A++   +M+   C  D  TY+  I+  C+  
Sbjct: 312 SLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMK 371

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLEDMIEKGIRPSGE 445
             ++       M  K   PS   ++++I+ L  +   G+V+ +     +M+  G  P   
Sbjct: 372 GSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART---WGEMVSSGCNPDVV 428

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           T+    +    EGR      L E  N+L++
Sbjct: 429 TYTTSMRAYCIEGR------LNEAENVLME 452



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 168/384 (43%), Gaps = 20/384 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++++      +      L+N MR   +  +  T+ +++R       +E A    
Sbjct: 216 NVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLL 275

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            +M+  G+  +   +N L++ALCK     +A  +FD ++ R I P++ T++ L+ G  K 
Sbjct: 276 RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKS 335

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A +   +MV  GC PD  TY   ++ LCK     E L  +  M     +P++  Y
Sbjct: 336 GKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNY 395

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++H    E        T+ EM  +G   DV  Y   + A+C   +      VL +M+ 
Sbjct: 396 TIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSK 455

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFC------- 385
            GV  ++   N +++G    G+TD A  + ++M  +       TY ++++          
Sbjct: 456 NGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVED 515

Query: 386 ----------QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                     +  EL   F ++  MK   F+P+  T+S ++ G  + G   ++  L+  M
Sbjct: 516 VLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLM 575

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR 459
            E  I  + + +  L     K  R
Sbjct: 576 KEDSISLNEDIYTALVTCFCKSKR 599



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  ++  LC+   +  AL  +  M  +  RP ++ ++ L+  Y   N+++ A D F +M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              G   DV  Y ALI  FC+  +      +  +M+     P+      ++ GL   G  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRG 128

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +E   + RRM +L        Y  ++   C   + ++A ++ + M  K   P + T + +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           IN  C +G +SD+  +LE M  +G +P+  T+  L +    EG+      + + M LL K
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK------VHKAMALLNK 242

Query: 476 EPLC 479
             +C
Sbjct: 243 MRVC 246



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 150/378 (39%), Gaps = 59/378 (15%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S IE L K++  Q     +  M  K +  +   + I++ K  + +       T+  M
Sbjct: 359 TYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEM 418

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
              G   ++  +   + A C    + +A+ +  +  K+    D+  Y+ L++G       
Sbjct: 419 VSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQT 478

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMV----------DVL-------CKAGRVDEALGIVK 259
             A  I ++M      P+  TY I++          DVL        KA  + +  G+  
Sbjct: 479 DHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFD 538

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      P S  YS ++  +  + R E+A      M+++ I  +  +Y AL+  FCK+ 
Sbjct: 539 VMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSK 598

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379
           ++ + + ++  M   G  P+  +   +L+GLI  G+TD+A  +F                
Sbjct: 599 RYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMN-------------- 644

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG---IVSDSCVLLEDMI 436
                                + K + P    + V+I+GL  KG   I  +  ++LE M 
Sbjct: 645 --------------------SRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERM- 683

Query: 437 EKGIRPSGETFGKLRKLL 454
               RPS +T+  L + L
Sbjct: 684 --NCRPSHQTYAMLTEEL 699


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 204/399 (51%), Gaps = 7/399 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           +A  FF WA++Q  Y H    Y++M+E L+K +  Q    ++  M  +R+    E F  +
Sbjct: 116 VALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYV 175

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           M  Y+R  K+  A+    +MQK G+  +L+  N  +  L     + KA    + M+   I
Sbjct: 176 MVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEI 235

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  TY+ L++G+     L  A E+  EM   GC+PD ++Y  ++  LCK  R+ E   
Sbjct: 236 EPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRL 295

Query: 257 IVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           +++ M  DS +  P    Y+  VH        ++A++   E E+     D   Y+A++ +
Sbjct: 296 LMEKMLKDSNLL-PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHS 354

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           FC+  +      ++ +M SKG  P+  T   ++NGL    + D+A ++ R+M K  C+ +
Sbjct: 355 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPN 414

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             +YT ++   C+ G   +A ++    +   +IP+  T+SVL++G   +G  S++C L+ 
Sbjct: 415 TVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVR 474

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLK-FLQEKMN 471
           +MI+KG  P+      L + L +E + D  K F+++ +N
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLN 513



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 174/381 (45%), Gaps = 39/381 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +++ Y  + ++E+A+     M   G + +  ++  ++  LCK K +++ + + 
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 297

Query: 190 DCM-KD------------------------------------RFIPDSKTYSILLEGWGK 212
           + M KD                                    RF  D   YS ++  + +
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +  + +A+EI  EM   GC PD+VTY  +++ LC+  +VD+A  +++ M    C+P +  
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++         +A +     E++  + +   Y+ L+  F +  K      ++++M 
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            KG  P     N+++  L    + DEA R   + +   C  +   +T +I  FCQ  +LE
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 537

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +   M L    P + T++ +I+ L  KG + ++  L   M+  G+ P+  T+  + 
Sbjct: 538 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVI 597

Query: 452 KLLIKEGR-EDVLKFLQEKMN 471
               + GR ED+LK L++ ++
Sbjct: 598 HQYCRMGRVEDLLKLLEKMLS 618



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 192/399 (48%), Gaps = 11/399 (2%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFC 135
           G  A  F + AE+++     V  Y +++ S  +  +     ++VN M +K  + +V T+ 
Sbjct: 326 GDEALEFLREAEERRFRVDKV-GYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYT 384

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKD 194
            ++    + +KV++A      M K+G   N  ++  LL+ LCK+ N  +A+E+ +   +D
Sbjct: 385 SVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEED 444

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            +IP++ TYS+L+ G+ ++     A ++ REM+  G  P  V   +++  LC+  +VDEA
Sbjct: 445 WWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA 504

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
              ++   +  C      ++ ++H +  ++ +E A+    +M  +    DV  Y  +I A
Sbjct: 505 KRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDA 564

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
             K  + +   ++   M   G+ P   T   +++     G  ++  ++  +M+   E   
Sbjct: 565 LGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT 624

Query: 375 DTYTMMIKMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             Y  +I+  C  G LE+A+K+  K ++    I + +T  +LI     KGI   S  +  
Sbjct: 625 -AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDA-NTCHMLIESYLSKGIPLMSYNVAC 682

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGRED-----VLKFLQ 467
            M  + + P  +   K+ K L+ EG+ +     +L+F++
Sbjct: 683 RMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVE 721


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 212/425 (49%), Gaps = 7/425 (1%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++ +L   G  + P++V  V+ +  +  T A+  F+WA KQ  + H+    ++++    K
Sbjct: 56  IEKSLGLYGDILVPDLVGKVIHRIPDPNT-AWEVFQWAGKQSKFTHNRFTCNNLLSVYVK 114

Query: 110 IRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
            R+ +       + M+     +  ++  +M  + +   V++A+  F  M+  G+   L +
Sbjct: 115 ARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRS 173

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
            N +L  LC    +  A E+F  M   F P+  +Y+I+++G  K   + +A  +F++MVD
Sbjct: 174 HNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVD 233

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
               PD+VTYG ++D L K  RV EA  + +   +  C PT   Y+ ++       RIE+
Sbjct: 234 KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIEN 293

Query: 289 AVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           A+  + +M +   L  D+  Y+ALI     +N+ +  Y + ++M   G +P+  T N +L
Sbjct: 294 ALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLL 353

Query: 348 NGLIGRGETDEAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +GL   G  D+A  +FR+M    +C+ +  TYT++I  FC+   L  A K+ K M+ +  
Sbjct: 354 DGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSL 413

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
           +P   TF+ +I  LC +  + ++  L E  I K  +P    F  +     K  R D  K 
Sbjct: 414 LPDAVTFTTVIQKLCKESRIDEAHELFES-IGKTCKPDSVLFNTMLAGYCKITRIDDAKK 472

Query: 466 LQEKM 470
           L ++M
Sbjct: 473 LHDRM 477



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 6/347 (1%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           VL    + G ++  +  + +    +  ++ +Y  MI+ L K R+      L   M  K +
Sbjct: 177 VLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAI 236

Query: 129 L-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +V T+  ++    + ++V+EA   F   +  G    +  +N ++  LCK   +  A  
Sbjct: 237 YPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALT 296

Query: 188 IFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           ++D M  +    PD  TYS L+ G        +A E++ EM+DTGC+PD+VTY  ++D L
Sbjct: 297 LYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356

Query: 246 CKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           CK+G  D+A+ I + M    VC P    Y+VL+  +   +R+ DAV    EME   +L D
Sbjct: 357 CKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPD 416

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
              +  +I   CK ++    + + + +  K   P+S   N +L G       D+A ++  
Sbjct: 417 AVTFTTVIQKLCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHD 475

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           RM+   C     TYT ++  FC+ G    A  ++  M    F P  H
Sbjct: 476 RMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPERH 522



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 11/283 (3%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCII 137
           A+  F+ A + +    +V  Y++MI+ L K  + +    L + M  +  L  +  T+  +
Sbjct: 259 AYDLFEEA-RAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSAL 317

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +       + E+A   +  M   G + ++  +N LL  LCKS    KA EIF  M    +
Sbjct: 318 INGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNV 377

Query: 198 --PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+  TY++L++ + K   L  A ++ +EM      PD VT+  ++  LCK  R+DEA 
Sbjct: 378 CDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAH 437

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + +S+  T C+P S +++ ++  Y    RI+DA      M  +G    +A Y AL+  F
Sbjct: 438 ELFESIGKT-CKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGF 496

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
           C+  ++ +   +  +M   G  P        L  L+ R  TD 
Sbjct: 497 CRTGRYSDALIMYHEMIEMGFPPERH-----LAELVDRTRTDH 534


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 203/399 (50%), Gaps = 7/399 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           +A  FF WA++Q  Y H    Y++M+E L+K +  Q    ++  M  +R+    E F  +
Sbjct: 116 VALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYV 175

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRF 196
           M  Y+R  K+  A+    +MQK G+  +L+  N  +  L     + KA    + M+    
Sbjct: 176 MVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEI 235

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  TY+ L++G+     L  A E+  EM   GC+PD ++Y  ++  LCK  R+ E   
Sbjct: 236 XPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRL 295

Query: 257 IVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           +++ M  DS +  P    Y+  VH        ++A++   E E+     D   Y+A++ +
Sbjct: 296 LMEKMLKDSNLL-PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHS 354

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           FC+  +      ++ +M SKG  P+  T   ++NGL    + D+A ++ R+M K  C+ +
Sbjct: 355 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPN 414

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             +YT ++   C+ G   +A ++    +   +IP+  T+SVL++G   +G  S++C L+ 
Sbjct: 415 TVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVR 474

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLK-FLQEKMN 471
           +MI+KG  P+      L + L +E + D  K F+++ +N
Sbjct: 475 EMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLN 513



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 171/381 (44%), Gaps = 39/381 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +++ Y  + ++E+A      M   G + +  ++  ++  LCK K +++ + + 
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLM 297

Query: 190 DCM-KD------------------------------------RFIPDSKTYSILLEGWGK 212
           + M KD                                    RF  D   YS ++  + +
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +  + +A+EI  EM   GC PD+VTY  +++ LC+  +VD+A  +++ M    C+P +  
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 417

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++         +A +     E+   + +   Y+ L+  F +  K      ++++M 
Sbjct: 418 YTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            KG  P     N+++  L    + DEA R   + +   C  +   +T +I  FCQ  +LE
Sbjct: 478 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 537

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +   M L    P + T++ +I+ L  KG + ++  L   M+  G  P+  T+  + 
Sbjct: 538 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVI 597

Query: 452 KLLIKEGR-EDVLKFLQEKMN 471
               + GR ED+LK L++ ++
Sbjct: 598 HQYCRMGRVEDLLKLLEKMLS 618



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 191/399 (47%), Gaps = 11/399 (2%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFC 135
           G  A  F + AE+++     V  Y +++ S  +  +     ++VN M +K  + +V T+ 
Sbjct: 326 GDEALEFLREAEERRFRVDKV-GYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYT 384

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            ++    + +KV++A      M K+G   N  ++  LL+ LCK+ N  +A+E+ +  ++ 
Sbjct: 385 SVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEX 444

Query: 196 F-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           + IP++ TYS+L+ G+ ++     A ++ REM+  G  P  V   +++  LC+  +VDEA
Sbjct: 445 WWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA 504

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
              ++   +  C      ++ ++H +  ++ +E A+    +M  +    DV  Y  +I A
Sbjct: 505 KRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDA 564

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
             K  + +   ++   M   G  P   T   +++     G  ++  ++  +M+   E   
Sbjct: 565 LGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT 624

Query: 375 DTYTMMIKMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             Y  +I+  C  G LE+A+K+  K ++    I + +T  +LI     KGI   S  +  
Sbjct: 625 -AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDA-NTCHMLIESYLSKGIPLMSYNVAC 682

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGRED-----VLKFLQ 467
            M  + + P  +   K+ K L+ EG+ +     +L+F++
Sbjct: 683 RMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVE 721


>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
 gi|223974035|gb|ACN31205.1| unknown [Zea mays]
 gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
          Length = 521

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 180/360 (50%), Gaps = 6/360 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           A+H  + +  K R++ + W++V  MR + +L      I+M +YA   +V +A+ TF+VM+
Sbjct: 138 AWHLAVWAAGKARRFDLAWEIVRRMRNRGVLTCRVMVILMERYAAASEVNKAIKTFDVME 197

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-GKDPNLP 217
           K+ +  + + F  LL ALCK KN+  A+E+    K  F   ++ ++I+L+GW     ++ 
Sbjct: 198 KFKIESDQSVFYSLLHALCKIKNIEDAEELLFLRKKFFPLTAEGFNIILDGWCNVITDVA 257

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+ ++REM +    PD ++Y +M+    K G + + L +   M      P   +Y+ LV
Sbjct: 258 EAKRVWREMSNHCITPDGMSYTLMISCFSKVGNLFDTLRVYDEMKKRGWIPGIVVYNSLV 317

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +    EN ++DA + F ++   G+  DV  YN +I   C++ K     +V++ M  +G+ 
Sbjct: 318 YVLTRENCVKDAHNIFSKLTDEGLQPDVETYNNMIVPLCESCKLDEARKVMESMILRGIV 377

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKV 396
           P   T +  L     +   DE+ ++ ++M +  C   +DT+ M+I  F    E   A +V
Sbjct: 378 PTISTYHAFLK----QEGIDESLKLLQKMKEDGCGPKSDTFVMLIDKFFLLNESGNALRV 433

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           W  M+     P    +  L+ GL   G +  +    ++M EKG     +   + +  L+K
Sbjct: 434 WNEMRKYEISPVRAHYMTLVQGLVKHGCIPRALEYYDEMKEKGFASDTQLDKEFKTFLLK 493



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 10/249 (4%)

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS---TVCRPTSFIYSVLVHTYGVENR 285
            G  P    + + V    KA R D A  IV+ M +     CR    +  +L+  Y   + 
Sbjct: 130 AGLPPPPEAWHLAVWAAGKARRFDLAWEIVRRMRNRGVLTCR----VMVILMERYAAASE 185

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +  A+ TF  MEK  I +D +++ +L+ A CK    ++   +L  +  K     +   NI
Sbjct: 186 VNKAIKTFDVMEKFKIESDQSVFYSLLHALCKIKNIEDAEELLF-LRKKFFPLTAEGFNI 244

Query: 346 ILNGLIGR-GETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           IL+G      +  EA RV+R M   C   D  +YT+MI  F + G L    +V+  MK +
Sbjct: 245 ILDGWCNVITDVAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGNLFDTLRVYDEMKKR 304

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            +IP +  ++ L+  L  +  V D+  +   + ++G++P  ET+  +   L +  + D  
Sbjct: 305 GWIPGIVVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNNMIVPLCESCKLDEA 364

Query: 464 KFLQEKMNL 472
           + + E M L
Sbjct: 365 RKVMESMIL 373


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 168/334 (50%), Gaps = 5/334 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFN--VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           TF +I++   +  ++E A    +   M + G++ ++  FN +L  LCK + +  A  +F 
Sbjct: 173 TFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFK 232

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
              +R   P+  TYS L++G  K   +  A ++  +MV+ GC  + VTY  +VD L K G
Sbjct: 233 RALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVG 292

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R+++A+ +++ M    C P +  Y+ L+  +    R+ +AV    EM + G    V  Y 
Sbjct: 293 RMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYT 352

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
            L    C++ +F     +L  M ++G APN+ T + I++GL   G   EA   F +M + 
Sbjct: 353 TLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARD 412

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
            +       Y+ +I   C+ G++++A++  + M     IP + TFS+LINGLCD G +  
Sbjct: 413 EVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDT 472

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              L   M E+G  P   T+  L   L +  R D
Sbjct: 473 GLELFRGMAERGCVPDMVTYATLVDRLCRASRVD 506



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 177/365 (48%), Gaps = 6/365 (1%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           MI+ L K R+      L   M  K +  +V T+  ++    + ++V+EA   F   +  G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGKDPNLPRA 219
               +  +N ++  LCK   +  A  ++D M   F   P   TYS L++G  +D  + + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            ++  EM   GC P+ VTY  +V+ L   GR  EA  +++ M +  C P    + +++  
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 280 YGVENRIEDAVDTFLE--MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
              E  IE A     E  M ++G+  DV  +N+++   CK  +  + + V K    +G  
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T + +++GL    + DEA ++  +M++L C A+  TY+ ++    + G +E A  V
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + M+    +P   T++ LI+G   +  + ++  LL +M+E G  PS  T+  L   L +
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 457 EGRED 461
            GR D
Sbjct: 361 SGRFD 365



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 148/303 (48%), Gaps = 6/303 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           ++  LCKS+ V KA  +F  M D+ I PD  TY  L++G GK   +  A ++F E    G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDA 289
           C+P +VTY  M+D LCK GR++ AL +   M      RPT   YS L+     ++ ++  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
                EM   G   +   YN L+ A     + K  + +L+ M + G  P   T  +I+ G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 350 LIGRGETDEAYRVFRRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           L   GE + A+RV   M  +      D  T+  ++   C+   +  A  V+K    +   
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKF 465
           P++ T+S LI+GL     + ++  LL  M+E G R +  T+  +   L+K GR ED +  
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 466 LQE 468
           L++
Sbjct: 301 LRQ 303



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 146/274 (53%), Gaps = 10/274 (3%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +++G  K   + +A  +F++MVD    PD+VTYG ++D L K  RV EA  + +   +  
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNV 324
           C PT   Y+ ++       RIE+A+  + +M  + G    V  Y+ LI   C+ ++    
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKM 383
            ++L++M  +G APN+ T N ++N L+G+G + EA+ +  +M    C  +  T+ ++IK 
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 384 FCQGGELEKAFKVWK--YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            C+ GE+E AF+V    +M      P + TF+ +++GLC +  + D+  + +  +E+G R
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           P+  T+  L   L K  + D      E + LL K
Sbjct: 241 PNVVTYSTLIDGLSKMAKMD------EALQLLAK 268



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 133/269 (49%), Gaps = 9/269 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           Y ++++ L K+ +   M D V  +R  R    + +  T+  ++  + + Q++ EAV    
Sbjct: 281 YSTVVDGLLKVGR---MEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLR 337

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M + G   ++  +  L   LC+S    +A EI D M  R   P++ TYS +++G  K  
Sbjct: 338 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAG 397

Query: 215 NLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +  A   F +M  D    P ++ Y  ++D LCKAG++DEA   ++ M      P    +
Sbjct: 398 RVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTF 457

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+L++      RI+  ++ F  M + G + D+  Y  L+   C+A++    + + + M S
Sbjct: 458 SILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRS 517

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            G++P+  T   +++GL+     ++A R+
Sbjct: 518 DGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 121/268 (45%), Gaps = 18/268 (6%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKR 127
           VL + R+AG L                    Y+++I+   K ++ +    L+  M     
Sbjct: 300 VLRQMRDAGCLP---------------DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 344

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +V T+  +     R  + +EAV   + M   G   N   ++ ++  LCK+  V +A  
Sbjct: 345 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 404

Query: 188 IFDCM-KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
            F+ M +D  + P    YS L++G  K   +  A E    M+  G  PD+VT+ I+++ L
Sbjct: 405 YFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGL 464

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C AGR+D  L + + M    C P    Y+ LV      +R+++A D F +M  +G+  D 
Sbjct: 465 CDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDR 524

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +    +I    + N+ ++  R+  + NS
Sbjct: 525 STRRTMIHGLLEVNRDEDAKRIQDEENS 552


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 181/357 (50%), Gaps = 7/357 (1%)

Query: 92  NYEHSVRAYHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
            +E S+  + S++    +   +     M+D +  M  K   NV  +  I+    + ++V+
Sbjct: 146 GHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP--NVVIYNTIIDGLCKSKQVD 203

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   N M+K G+  ++  +N L+S LC S     A  +  CM  R I PD  T++ L+
Sbjct: 204 NALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALI 263

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +   K+  +  A E + EM+    +PDIVTY +++  LC   R+DEA  +   M S  C 
Sbjct: 264 DACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF 323

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS+L++ Y    ++E  +  F EM + G++ +   Y  LI  +C+A K      +
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
            + M   GV PN  T N++L+GL   G+ ++A  +   M K   +AD  TY ++I+  C+
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCK 443

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            GE+  A+ ++  +  +  +P + T++ ++ GL  KG+  ++  L   M E GI P+
Sbjct: 444 AGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 84  FKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKY 141
           + W + Q     H++   + ++    +  Q  +    +  M +     ++ TF  ++  +
Sbjct: 102 YLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGF 161

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDS 200
            R  +V +A+Y F+ M   G   N+  +N ++  LCKSK V  A ++ + M KD   PD 
Sbjct: 162 CRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDV 221

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+ L+ G         A  +   M      PD+ T+  ++D   K GRV EA    + 
Sbjct: 222 VTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M      P    YS+L++   + +R+++A + F  M   G   DV  Y+ LI  +CK+ K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKK 341

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYT 378
            ++  ++  +M+ +GV  N+ T  I++ G    G+ + A  +FRRM+  C    +  TY 
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV-FCGVHPNIITYN 400

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           +++   C  G++EKA  +   M+       + T++++I G+C  G V+D+  +   +  +
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQ 460

Query: 439 GIRPSGETFGKLRKLLIKEG 458
           G+ P   T+  +   L K+G
Sbjct: 461 GLMPDIWTYTTMMLGLYKKG 480



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 181/368 (49%), Gaps = 7/368 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQI---MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           S+  +  ++ +++K+++Y +   +W+ +  +      N+ T  I++  + R  ++  A+ 
Sbjct: 80  SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPH--NLCTCNILLNCFCRCSQLSLALS 137

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
               M K G   ++  F  LL+  C+   V  A  +FD M    + P+   Y+ +++G  
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   +  A ++   M   G  PD+VTY  ++  LC +GR  +A  +V  M      P  F
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVF 257

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++ L+     E R+ +A + + EM +  +  D+  Y+ LI   C  ++      +   M
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM 317

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGEL 390
            SKG  P+  T +I++NG     + +   ++F  M +     +  TYT++I+ +C+ G+L
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKL 377

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             A ++++ M      P++ T++VL++GLCD G +  + V+L DM + G+     T+  +
Sbjct: 378 NVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNII 437

Query: 451 RKLLIKEG 458
            + + K G
Sbjct: 438 IRGMCKAG 445



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 170/343 (49%), Gaps = 2/343 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R   R  K+++++  F  M +     ++A F+ LLSA+ K K       +++ M+   
Sbjct: 52  MLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG 111

Query: 197 IPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           IP +  T +ILL  + +   L  A     +M+  G  P IVT+G +++  C+  RV +AL
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M     +P   IY+ ++       ++++A+D    MEK+GI  DV  YN+LI   
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADA 374
           C + ++ +  R++  M  + + P+  T N +++  +  G   EA   +  MI+   + D 
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDI 291

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY+++I   C    L++A +++ +M  K   P + T+S+LING C    V     L  +
Sbjct: 292 VTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE 351

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           M ++G+  +  T+  L +   + G+ +V + +  +M      P
Sbjct: 352 MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHP 394



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 173/383 (45%), Gaps = 9/383 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
            FCF + A    +       Y  M+ +  +  +     DL   M   R L ++  F  ++
Sbjct: 35  GFCFSRRAYSNGS------DYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLL 88

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI 197
              ++++K +  +Y +  MQ  G+  NL   N LL+  C+   +  A      M K    
Sbjct: 89  SAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHE 148

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P   T+  LL G+ +   +  A  +F +MV  G  P++V Y  ++D LCK+ +VD AL +
Sbjct: 149 PSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDL 208

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M+     P    Y+ L+       R  DA      M K  I  DV  +NALI A  K
Sbjct: 209 LNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             +        ++M  + + P+  T ++++ GL      DEA  +F  M+ K C  D  T
Sbjct: 269 EGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVT 328

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+++I  +C+  ++E   K++  M  +  + +  T+++LI G C  G ++ +  +   M+
Sbjct: 329 YSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388

Query: 437 EKGIRPSGETFGKLRKLLIKEGR 459
             G+ P+  T+  L   L   G+
Sbjct: 389 FCGVHPNIITYNVLLHGLCDNGK 411


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 235/454 (51%), Gaps = 10/454 (2%)

Query: 30  EALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG---TLAFCFFKW 86
           E +DA      I  S+ +  L  +L  SGI +S ++++ VL++ R +         F+++
Sbjct: 37  EDVDAETVFRMINGSNLQGELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRY 96

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD-LVNAMRTKR-MLNVETFCIIMRKYARV 144
           A  ++ + HS  +  +M+  L + R++  +W+ L+   R  R +++  T  +++ + A++
Sbjct: 97  AGARRGFYHSSFSLDTMLYILGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKL 156

Query: 145 QKVEEAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
             V + V +F   ++      + A FN LL  LC+ K++  A+ ++  +K +F PD +T+
Sbjct: 157 CSVRQTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTF 216

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +ILL GW    +   A   F EM   G  PD+VTY  ++DV CK   +++A  ++  M  
Sbjct: 217 NILLSGW---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMRE 273

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    Y+ ++   G+  + + A +   EM++ G   DVA YNA I  +C A +  +
Sbjct: 274 EDETPDVITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGD 333

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
             +++ +M  KG++PN+ T N+    L    +   ++ ++ RM+   C  +  +   +IK
Sbjct: 334 ADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYERMLGNGCLPNTQSCMFLIK 393

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           MF +  +++ A ++W+ M +K F        VL++ LCD   V ++   L +M+EKG RP
Sbjct: 394 MFKRHEKVDMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRP 453

Query: 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           S  +F +++ L+    + D +  L +KM +   E
Sbjct: 454 SNVSFKRIKLLMELANKHDEVNNLIQKMAIFGTE 487


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 176/378 (46%), Gaps = 15/378 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
            Y ++++ + KI       +L+  M     +  NV  +  I+    +  +  +A   +  
Sbjct: 215 TYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTE 274

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           MQ+ G+  +L  +N ++   C S    +AQ +   M +R I P+  TYS L+  + K+  
Sbjct: 275 MQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERK 334

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E++ EM+  G  P+ +TY  M+D  CK  R+D A  +   M +  C P  F ++ 
Sbjct: 335 FFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNT 394

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y    RI+D  +   EM + G++AD   YN LI  FC          + + M S G
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------CEADADTYTMMIKM 383
           V P+  TCN +L+GL   G+  +A  +F+ M K              E D  TY ++I  
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
               G+  +A +++K M  +  +P+  T+S +INGLC +  + ++  + + M  K   P 
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574

Query: 444 GETFGKLRKLLIKEGRED 461
             TF  L     K GR D
Sbjct: 575 VVTFNTLVSGYCKAGRVD 592



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 179/358 (50%), Gaps = 6/358 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  ++ ++  + ++ +  ++  L   M  K++  +V +F I+++ +    K+  A+ TF
Sbjct: 76  SVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTF 135

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + K G   ++  F+ LL  LC    V +A ++F  M     P+  T++ L+ G  ++ 
Sbjct: 136 GKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR---PNVVTFTTLMNGLCREG 192

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIY 273
            +  A  +   MV+ G  P+ +TYG +VD +CK G    AL +++ M+  +  +P   IY
Sbjct: 193 RVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIY 252

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++     + R  DA + + EM++ GI  D+  YN +I  FC + ++    R+L++M  
Sbjct: 253 SAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE 312

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T + ++N  +   +  EA  ++  M+ +    +  TY  MI  FC+   L+ 
Sbjct: 313 RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDA 372

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  ++  M  K   P + TF+ LI+G C    + D   LL +M E G+     T+  L
Sbjct: 373 AEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTL 430



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 185/382 (48%), Gaps = 14/382 (3%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A    +  E+  + + +V  Y ++I+ L K  ++    +L   M+ K +  ++ T+  ++
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
             +    +  EA      M +  +  N+  ++ L++A  K +   +A+E++D M  R  I
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGII 351

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ TY+ +++G+ K   L  A  +F  M   GC+PD+ T+  ++D  C A R+D+   +
Sbjct: 352 PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTEL 411

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M  T     +  Y+ L+H + +   +  A+D   +M  +G+  D+   N L+   C 
Sbjct: 412 LHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 471

Query: 318 ANKFKNVYRVLKDMNSK-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             K K+   + K M              GV P+ +T NI+++GLI  G+  EA  +++ M
Sbjct: 472 NGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEM 531

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
             +    +  TY+ MI   C+   L++A +++  M  K F P + TF+ L++G C  G V
Sbjct: 532 PHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRV 591

Query: 426 SDSCVLLEDMIEKGIRPSGETF 447
            D   L  +M  +GI     T+
Sbjct: 592 DDGLELFCEMGRRGIVADAITY 613



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 179/376 (47%), Gaps = 28/376 (7%)

Query: 85  KWAEKQQNYEH--------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFC 135
           +W+E Q+  +         +V  Y ++I +  K R++    +L + M  + ++ N  T+ 
Sbjct: 299 RWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYN 358

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            ++  + +  +++ A + F VM   G + ++  FN L+   C +K +    E+   M + 
Sbjct: 359 SMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTET 418

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             + D+ TY+ L+ G+    +L  A ++ ++M+ +G  PDIVT   ++D LC  G++ +A
Sbjct: 419 GLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 478

Query: 255 LGIVKSM-----DSTVCRPTSFI------YSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           L + K+M     D    RP + +      Y++L+     E +  +A + + EM   GI+ 
Sbjct: 479 LEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVP 538

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +   Y+++I   CK ++     ++   M SK  +P+  T N +++G    G  D+   +F
Sbjct: 539 NTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELF 598

Query: 364 ----RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
               RR I    ADA TY  +I  F + G +  A  +++ M      P   T   ++  L
Sbjct: 599 CEMGRRGIV---ADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVL 655

Query: 420 CDKGIVSDSCVLLEDM 435
             K  +  +  +LED+
Sbjct: 656 WSKEELKRAVAMLEDL 671



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 155/329 (47%), Gaps = 7/329 (2%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-D 199
           +  ++ +E+A+  F+ M +     ++  FN L+  + + +       ++  M+ + IP D
Sbjct: 52  FHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCD 111

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +++IL++ +     LP A   F ++   G  PD+VT+  ++  LC   RV EAL +  
Sbjct: 112 VYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFH 171

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M    CRP    ++ L++    E R+ +AV     M ++G+  +   Y  ++   CK  
Sbjct: 172 QM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIG 227

Query: 320 KFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              +   +L+ M     + PN    + I++GL   G   +A+ ++  M  K    D  TY
Sbjct: 228 DTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTY 287

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             MI  FC  G   +A ++ + M  ++  P++ T+S LIN    +    ++  L ++M+ 
Sbjct: 288 NCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLP 347

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           +GI P+  T+  +     K+ R D  + +
Sbjct: 348 RGIIPNTITYNSMIDGFCKQNRLDAAEHM 376



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 123/268 (45%), Gaps = 7/268 (2%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +MV +   P ++ +  ++ V+ +  R D  + + + M+   
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
                + +++L+  +   +++  A+ TF ++ K G   DV  ++ L+   C  ++     
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
            +   M      PN  T   ++NGL   G   EA  +  RM++   + +  TY  ++   
Sbjct: 168 DLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 385 CQGGELEKAFKVWKYMK-LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M+ +    P++  +S +I+GL   G  SD+  L  +M EKGI P 
Sbjct: 224 CKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPD 283

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  +  + LQE +
Sbjct: 284 LFTYNCMIDGFCSSGRWSEAQRLLQEML 311



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 18/240 (7%)

Query: 32  LDAAKSISKIMLSS---PKVV-----LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           L+AA  +S+ M+SS   P +V     LD   D   ++       D LE F+ A   +   
Sbjct: 440 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK-------DALEMFK-AMQKSKMD 491

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
              +      E  V+ Y+ +I  L    ++    +L   M  + ++ N  T+  ++    
Sbjct: 492 LDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLC 551

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           +  +++EA   F+ M     + ++  FN L+S  CK+  V    E+F  M  R  + D+ 
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T   M+ VL     +  A+ +++ +
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 192/401 (47%), Gaps = 40/401 (9%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           + I +S E+V+ +L +F++    A   F+WAE +  Y+HS  AY +M++ + K++Q   M
Sbjct: 45  NSIHLSHELVDKLLFRFKDDWKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQM 104

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
             L+  M   + + ++T    MR++A  ++ E  +  F+ +  +G+ +N  + N LL  L
Sbjct: 105 EFLLEEMEKGQHVTLKTVGKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTL 164

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-------------------GKDP--- 214
           CK + V  A+EIF  +K    P++ T++I + GW                   G  P   
Sbjct: 165 CKERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVI 224

Query: 215 -------------NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
                        N  +  E+  EM   G  P++VTY  ++  L K+   +EAL I + M
Sbjct: 225 SYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRM 284

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMYNALIGAFCKANK 320
            S  C+P +  Y+ L+HT G   R E+A+  F +EM   G+  + + YN++I   C  ++
Sbjct: 285 KSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQ 344

Query: 321 FKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAY-RVFRRMIK--LCEADADT 376
            +    +LK++ +  +  P+ +T   +L      G  D    ++   M+K      D   
Sbjct: 345 ERKALNLLKEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSA 404

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           YT+++   C+  + E A+ +++ M  K   P   T  +L++
Sbjct: 405 YTLLVHGLCRANKCEWAYCLFEEMIGKDMTPKYQTCRLLLD 445



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 148/336 (44%), Gaps = 52/336 (15%)

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           E+VL  F   GT               E +  + + ++++L K R+ ++  ++   +++ 
Sbjct: 136 ENVLRVFDKLGTFGL------------EKNTESMNLLLDTLCKERKVELAREIFLDLKSH 183

Query: 127 RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
              N  TF I +  + +V +VEEA +T   M+ +G T  + +++ ++   C   N  K  
Sbjct: 184 ISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVY 243

Query: 187 EIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           E+ D M+ +  IP+  TY+ ++    K      A +I + M   GC PD + Y  ++  L
Sbjct: 244 ELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTL 303

Query: 246 CKAGRVDEA------------------------------------LGIVKSMD-STVCRP 268
            KAGR +EA                                    L ++K ++ S +C+P
Sbjct: 304 GKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICKP 363

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLE--MEKNGILADVAMYNALIGAFCKANKFKNVYR 326
               Y  L+ +      I+  +   L+  ++K+ +  D + Y  L+   C+ANK +  Y 
Sbjct: 364 DVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSAYTLLVHGLCRANKCEWAYC 423

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
           + ++M  K + P  +TC ++L+ +  +   D A ++
Sbjct: 424 LFEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAAQKI 459



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 105/236 (44%), Gaps = 4/236 (1%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y  MVD++ K  ++D+   +++ M+         +   +    G   + E+ +  F ++
Sbjct: 87  AYDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGKAMRRFAGA-RQWENVLRVFDKL 145

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              G+  +    N L+   CK  K +    +  D+ S  ++PN+ T NI ++G       
Sbjct: 146 GTFGLEKNTESMNLLLDTLCKERKVELAREIFLDLKSH-ISPNANTFNIFIHGWCKVNRV 204

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +EAY   + M    C     +Y+ +++ +C      K +++   M+ +  IP++ T++ +
Sbjct: 205 EEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNVVTYTSV 264

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           ++ L       ++  + + M   G +P    +  L   L K GR E+ ++  + +M
Sbjct: 265 MSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEM 320


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 188/369 (50%), Gaps = 7/369 (1%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +MI +L ++ + ++   +     ++   N V  F  ++  Y +    +EA+  F  M+  
Sbjct: 192 AMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVS 251

Query: 161 GVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPR 218
           G+  NL  +N ++ A  K     ++  EIF+ M ++   PD  TY+ LL    +      
Sbjct: 252 GLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEA 311

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           AR +F EM+D G + D+ TY  ++D +CK G++D A  I+  M      P    YS +  
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            Y    R+EDA++ + EM+  GI  D   YN L+  + K  +F++  +V K+M S GV  
Sbjct: 372 GYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKK 431

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N +L+G   +G+ +E  RVF+ M K     +  TY+ +I ++ +G   E+A +V+
Sbjct: 432 DVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVF 491

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           +  K       +  +S LIN LC  G+V  + +LL++M ++GIRP+  T+  +       
Sbjct: 492 REFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF--- 548

Query: 458 GREDVLKFL 466
           GR    +FL
Sbjct: 549 GRSTTAEFL 557



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y +M +  AK  + +   +L N M+   + L+  ++  ++  YA++ + E+A+   
Sbjct: 362 NVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVC 421

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M   GV +++  +N LL    K     +   +F  MK DR  P+  TYS L++ + K 
Sbjct: 422 KEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKG 481

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A E+FRE    G   D+V Y  +++ LCK G VD A+ ++  M     RP    Y
Sbjct: 482 SLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTY 541

Query: 274 SVLVHTYGVENRIEDAVD 291
           + ++  +G     E  VD
Sbjct: 542 NSIIDAFGRSTTAEFLVD 559



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 38/235 (16%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           + S ++ T G   ++E A   F      G    V  ++ALI A+ K+  F    +V + M
Sbjct: 189 LASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESM 248

Query: 332 NSKGVAPNSRTCNIIL--------------------------------NGLIG---RGET 356
              G+ PN  T N ++                                N L+    RG  
Sbjct: 249 KVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGL 308

Query: 357 DEAYR-VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            EA R +F  MI +  + D  TY  ++   C+GG+++ A+++   M  K+ +P++ T+S 
Sbjct: 309 WEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYST 368

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           + +G    G + D+  L  +M   GI     ++  L  +  K GR ED LK  +E
Sbjct: 369 MADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKE 423


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 194/422 (45%), Gaps = 3/422 (0%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL     +  PE V  VL + ++    A  +F+W E++    H   +Y+S++  +A+ 
Sbjct: 53  ENALSALNFKPQPEFVIGVLRRLKDVNR-AIEYFRWYERRTELPHCPESYNSLLLVMARC 111

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIM-RKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           R +  +  ++  M           CI M     +  K+ E       M+K+      +A+
Sbjct: 112 RNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAY 171

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+ A     +      +F  M++  + P    ++ L+ G+ K+  +  A  +  EM  
Sbjct: 172 TTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS 231

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +  + DIV Y + +D   K G+VD A      +++   +P    Y+ ++      NR+++
Sbjct: 232 SSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDE 291

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           AV+ F  +EKN  +     YN +I  +  A KF   Y +L+   +KG  P+    N IL 
Sbjct: 292 AVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT 351

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
            L   G+ DEA RVF  M K    +  TY ++I M C+ G+L+ AF++   M+     P+
Sbjct: 352 CLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPN 411

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           + T +++++ LC    + ++C + E M  K   P   TF  L   L K GR D    + E
Sbjct: 412 VRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYE 471

Query: 469 KM 470
           KM
Sbjct: 472 KM 473



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 189/375 (50%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       ++   + L+   R K  + +V  +  I+    ++ KV+EA+  F  M
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM 369

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
           +K     NL+ +N L+  LC++  +  A E+ D M K    P+ +T +I+++   K   L
Sbjct: 370 KK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKL 428

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF +M    C PD +T+  ++D L K GRVD+A  I + M  + CR  S +Y+ L
Sbjct: 429 DEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSL 488

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R ED    + +M       D+ + N  +    KA + +    + +++ S+  
Sbjct: 489 IKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRF 548

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P++R+ +I+++GLI  G  +E Y +F  M +  C  D   Y ++I  FC+ G++ KA++
Sbjct: 549 VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK K F P++ T+  +I+GL     + ++ +L E+   K I  +   +  L     
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E++
Sbjct: 669 KVGRIDEAYLILEEL 683



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 177/371 (47%), Gaps = 4/371 (1%)

Query: 102 SMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           S+I+ L K+ +    + +   M  +    N   +  +++ +    + E+    +  M   
Sbjct: 452 SLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQ 511

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRA 219
             + +L   N  +  + K+    K + +F+ +K R F+PD+++YSIL+ G  K       
Sbjct: 512 NCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANET 571

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            E+F  M + GC  D   Y I++D  CK G+V++A  +++ M +    PT   Y  ++  
Sbjct: 572 YELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
               +R+++A   F E +   I  +V +Y++LI  F K  +    Y +L+++  KG+ PN
Sbjct: 632 LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN 691

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T N +L+ L+   E +EA   F+ M +L C  +  TY ++I   C+  +  KAF  W+
Sbjct: 692 VYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQ 751

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M+ +   PS  +++ +I+GL   G ++++  L +     G  P    +  + + L    
Sbjct: 752 EMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN 811

Query: 459 RE-DVLKFLQE 468
           R  D     +E
Sbjct: 812 RAMDAFSLFEE 822



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 188/394 (47%), Gaps = 17/394 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI  L K  +     ++   + + +R+     +  ++  Y    K +EA       +
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR 335

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             G   ++ A+N +L+ L K   V +A  +F+ MK    P+  TY+IL++   +   L  
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDC 395

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A E+   M   G  P++ T  IMVD LCK+ ++DEA  I + MD  VC P    +  L+ 
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLID 455

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G   R++DA   + +M  +    +  +Y +LI  F    + ++ +++ KDM ++  +P
Sbjct: 456 GLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSP 515

Query: 339 NSRTCNIILNGLIGRGETDEAYRVF-----RRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           + +  N  ++ +   GE ++   +F     RR +     DA +Y+++I    + G   + 
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV----PDARSYSILIHGLIKAGFANET 571

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           ++++  MK +  +     ++++I+G C  G V+ +  LLE+M  KG  P+  T+G +   
Sbjct: 572 YELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631

Query: 454 LIKEGREDVLKFLQE-------KMNLLVKEPLCD 480
           L K  R D    L E       ++N+++   L D
Sbjct: 632 LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 191/428 (44%), Gaps = 38/428 (8%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           +L   R  G +      + E +++   ++  Y+ +I+ L +  +    ++L ++M+   +
Sbjct: 349 ILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGL 408

Query: 129 L-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             NV T  I++ +  + QK++EA   F  M     T +   F  L+  L K   V  A +
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           I++ M D     +S  Y+ L++ +          +I+++MV+  C+PD+      +D + 
Sbjct: 469 IYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMF 528

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           KAG  ++   + + + S    P +  YS+L+H         +  + F  M++ G + D  
Sbjct: 529 KAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN +I  FCK  K    Y++L++M +KG  P   T   +++GL      DEAY +F   
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 367 -IKLCEADADTYTMMIKMFCQGGELEKAFKV----------------------------- 396
             K  E +   Y+ +I  F + G +++A+ +                             
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEI 708

Query: 397 ------WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
                 ++ MK  +  P+  T+ +LINGLC     + + V  ++M ++G++PS  ++  +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 451 RKLLIKEG 458
              L K G
Sbjct: 769 ISGLAKAG 776



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 129/267 (48%), Gaps = 2/267 (0%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           ++ K+Q      RAY+ +I+   K  +    + L+  M+TK     V T+  ++   A++
Sbjct: 576 YSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKI 635

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTY 203
            +++EA   F   +   +  N+  ++ L+    K   + +A  I +  M+    P+  T+
Sbjct: 636 DRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTW 695

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + LL+   K   +  A   F+ M +  C P+ VTYGI+++ LCK  + ++A    + M  
Sbjct: 696 NSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK 755

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              +P++  Y+ ++        I +A   F   + NG + D A YNA+I      N+  +
Sbjct: 756 QGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMD 815

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGL 350
            + + ++   +G+  +++TC ++L+ L
Sbjct: 816 AFSLFEETRRRGLHIHNKTCVVLLDTL 842



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 13/295 (4%)

Query: 82  CFFKWAE-----------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-ML 129
           C FK  E           K + +    R+Y  +I  L K       ++L  +M+ +  +L
Sbjct: 526 CMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   + I++  + +  KV +A      M+  G    +  +  ++  L K   + +A  +F
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K + I  +   YS L++G+GK   +  A  I  E++  G  P++ T+  ++D L KA
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKA 705

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             ++EAL   +SM    C P    Y +L++      +   A   + EM+K G+      Y
Sbjct: 706 EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
             +I    KA        +     + G  P+S   N ++ GL       +A+ +F
Sbjct: 766 TTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 2/167 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT-KRMLNVETFCIIMRKYARVQKVE 148
           Q+    +V  ++S++++L K  +         +M+  K   N  T+ I++    +V+K  
Sbjct: 685 QKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFN 744

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILL 207
           +A   +  MQK G+  +  ++  ++S L K+ N+ +A  +FD  K +  +PDS  Y+ ++
Sbjct: 745 KAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           EG         A  +F E    G +    T  +++D L K   +++A
Sbjct: 805 EGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQA 851


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 188/369 (50%), Gaps = 7/369 (1%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +MI +L ++ + ++   +     ++   N V  F  ++  Y +    +EA+  F  M+  
Sbjct: 192 AMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVS 251

Query: 161 GVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPR 218
           G+  NL  +N ++ A  K     ++  EIF+ M ++   PD  TY+ LL    +      
Sbjct: 252 GLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEA 311

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           AR +F EM+D G + D+ TY  ++D +CK G++D A  I+  M      P    YS +  
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            Y    R+EDA++ + EM+  GI  D   YN L+  + K  +F++  +V K+M S GV  
Sbjct: 372 GYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKK 431

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N +L+G   +G+ +E  RVF+ M K     +  TY+ +I ++ +G   E+A +V+
Sbjct: 432 DVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVF 491

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           +  K       +  +S LIN LC  G+V  + +LL++M ++GIRP+  T+  +       
Sbjct: 492 REFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF--- 548

Query: 458 GREDVLKFL 466
           GR    +FL
Sbjct: 549 GRSTTAEFL 557



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y +M +  AK  + +   +L N M+   + L+  ++  ++  YA++ + E+A+   
Sbjct: 362 NVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVC 421

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M   GV +++  +N LL    K     +   +F  MK DR  P+  TYS L++ + K 
Sbjct: 422 KEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKG 481

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A E+FRE    G   D+V Y  +++ LCK G VD A+ ++  M     RP    Y
Sbjct: 482 SLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTY 541

Query: 274 SVLVHTYGVENRIEDAVD 291
           + ++  +G     E  VD
Sbjct: 542 NSIIDAFGRSTTAEFLVD 559



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 38/235 (16%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           + S ++ T G   ++E A   F      G    V  ++ALI A+ K+  F    +V + M
Sbjct: 189 LASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESM 248

Query: 332 NSKGVAPNSRTCNIIL--------------------------------NGLIG---RGET 356
              G+ PN  T N ++                                N L+    RG  
Sbjct: 249 KVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGL 308

Query: 357 DEAYR-VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            EA R +F  MI +  + D  TY  ++   C+GG+++ A+++   M  K+ +P++ T+S 
Sbjct: 309 WEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYST 368

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           + +G    G + D+  L  +M   GI     ++  L  +  K GR ED LK  +E
Sbjct: 369 MADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKE 423


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 218/441 (49%), Gaps = 13/441 (2%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEH 95
           +S+    S   V    LD +G R S  + + ++  + ++G +  A   F+   +  N++ 
Sbjct: 128 VSRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLV-RNSNFQI 186

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
                  +++ +        +W   +  +       V+ + I++ K+ +   + +A   F
Sbjct: 187 PFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIF 246

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
           N ++K G+     +FN L++ LCKS+N+ +   +   M+ +R  PD  TYS+L+ G  K+
Sbjct: 247 NEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKE 306

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A ++F EM   G  P+ +T+  ++D   ++ R+D A+     M +   +P   +Y
Sbjct: 307 GRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMY 366

Query: 274 SVLVHTY---GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           + L++     G  N+    VD   EM+  G+  D   Y  LI  +CK    ++   + K 
Sbjct: 367 NTLLNGLCKVGDVNKARKLVD---EMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKG 423

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           MN +GV  ++     +++G    G   +A R  R M++   + D  TYTM+I  +C+ G 
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGN 483

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++  FK+ K M++    P + T++VL+NGLC +G + ++ +LLE M+  G+ P   T+  
Sbjct: 484 VKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543

Query: 450 LRKLLIKEGR-EDVLKFLQEK 469
           L +   K G+ ED+LK   EK
Sbjct: 544 LLEGHCKNGKAEDLLKLRNEK 564



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 157/324 (48%), Gaps = 3/324 (0%)

Query: 150 AVYTF-NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            ++TF + + +YG    +  +N L++  CK  ++R A+ IF+ ++ R + P + +++ L+
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K  NL     + + M +    PD+ TY +++  LCK GR+D A  +   M     R
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    ++ L+       R++ A++T+ +M   G+  D+ MYN L+   CK        ++
Sbjct: 326 PNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQ 386
           + +M   G+ P+  T   +++G    G+ + A  + + M +     D   +T +I  FC+
Sbjct: 386 VDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCR 445

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +  A +  + M      P   T++++I+G C KG V     LL++M   G +P   T
Sbjct: 446 DGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVIT 505

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  L   L K+G+      L E M
Sbjct: 506 YNVLMNGLCKQGQMKNANMLLEAM 529



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 1/205 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L++ +  E  I DA   F E+ K G+      +N LI   CK+      +R+
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M    + P+  T +++++GL   G  D A ++F  M +     +  T+T +I    +
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYR 340

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              ++ A   +  M      P +  ++ L+NGLC  G V+ +  L+++M   G++P   T
Sbjct: 341 SRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKIT 400

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMN 471
           +  L     KEG  +    +++ MN
Sbjct: 401 YTTLIDGYCKEGDLESAMEIRKGMN 425



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           + E+ + G    V  YN LI  FCK    ++   +  ++  +G+ P + + N ++NGL  
Sbjct: 211 YSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCK 270

Query: 353 RGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
               DE +R+ + M +     D  TY+++I   C+ G L+ A +++  M+ +   P+  T
Sbjct: 271 SRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGIT 330

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           F+ LI+G      +  +      M+  G++P    +  L   L K G  +  + L ++M 
Sbjct: 331 FTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMK 390

Query: 472 LLVKEP 477
           ++  +P
Sbjct: 391 MVGMKP 396


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 189/395 (47%), Gaps = 13/395 (3%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           + I++S ++V  +L++F++    A   F+WAE    ++H+   Y  +I++L K +Q   M
Sbjct: 98  NSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKM 157

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
             ++  M+  R++ ++T    MR++A   + E AV  F+ ++ YG+ +N  + N LL  L
Sbjct: 158 RGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTL 217

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           CK K V KA++++  +K    P++ T+++ + GW K   +  A     EM   G  P ++
Sbjct: 218 CKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVI 277

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y  ++   C     ++   ++  MD+  C      Y+ ++ +       E+A+     M
Sbjct: 278 SYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERM 337

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIGRGE 355
           +  G   D   YN LI    +A K +    V + +M SK V PN+ T N ++     R  
Sbjct: 338 KSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAR 397

Query: 356 TDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH--- 410
            ++A ++   M K   C+ D  TY  ++K   + G+ +          L   I   H   
Sbjct: 398 EEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNL----LDEMINKHHLSL 453

Query: 411 ---TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              T+S+LI+GLC       +  L E MI + I+P
Sbjct: 454 DISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKP 488



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 133/316 (42%), Gaps = 40/316 (12%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           E +  + + ++++L K ++ +    +   +++    N  TF + +  + +V K++EA +T
Sbjct: 204 EKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWT 263

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGK 212
              M+ YG    + +++ ++   C   N  K  E+ D M  +  P +  TY+ ++    K
Sbjct: 264 LEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTK 323

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK-SMDSTVCRPTSF 271
                 A +I   M   G  PD + Y  ++  L +AG+V EA+ + +  M S    P + 
Sbjct: 324 SEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTS 383

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEK--------------------------------- 298
            Y+ ++  Y    R E A+    EM+K                                 
Sbjct: 384 TYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLD 443

Query: 299 -----NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
                + +  D++ Y+ LI   C+ANK    Y++ + M S+ + P   TC ++L+    +
Sbjct: 444 EMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLTCQLLLDEFKQK 503

Query: 354 GETDEAYRVFRRMIKL 369
                A R+   M KL
Sbjct: 504 NMDGVADRIEGIMKKL 519


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 189/395 (47%), Gaps = 13/395 (3%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           + I++S ++V  +L++F++    A   F+WAE    ++H+   Y  +I++L K +Q   M
Sbjct: 67  NSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKM 126

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
             ++  M+  R++ ++T    MR++A   + E AV  F+ ++ YG+ +N  + N LL  L
Sbjct: 127 RGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTL 186

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           CK K V KA++++  +K    P++ T+++ + GW K   +  A     EM   G  P ++
Sbjct: 187 CKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVI 246

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y  ++   C     ++   ++  MD+  C      Y+ ++ +       E+A+     M
Sbjct: 247 SYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERM 306

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIGRGE 355
           +  G   D   YN LI    +A K +    V + +M SK V PN+ T N ++     R  
Sbjct: 307 KSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAR 366

Query: 356 TDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH--- 410
            ++A ++   M K   C+ D  TY  ++K   + G+ +          L   I   H   
Sbjct: 367 EEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNL----LDEMINKHHLSL 422

Query: 411 ---TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              T+S+LI+GLC       +  L E MI + I+P
Sbjct: 423 DISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKP 457



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 126/295 (42%), Gaps = 40/295 (13%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           E +  + + ++++L K ++ +    +   +++    N  TF + +  + +V K++EA +T
Sbjct: 173 EKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIHGWCKVNKIDEAHWT 232

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGK 212
              M+ YG    + +++ ++   C   N  K  E+ D M  +  P +  TY+ ++    K
Sbjct: 233 LEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTK 292

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK-SMDSTVCRPTSF 271
                 A +I   M   G  PD + Y  ++  L +AG+V EA+ + +  M S    P + 
Sbjct: 293 SEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTS 352

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEK--------------------------------- 298
            Y+ ++  Y    R E A+    EM+K                                 
Sbjct: 353 TYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLD 412

Query: 299 -----NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
                + +  D++ Y+ LI   C+ANK    Y++ + M S+ + P   TC ++L+
Sbjct: 413 EMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLTCQLLLD 467


>gi|449436631|ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
          Length = 1559

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 189/368 (51%), Gaps = 9/368 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCII 137
           ++ FF W E +  ++H+   Y+ M++ L K  ++ + W L+N MR     + +  TF I+
Sbjct: 615 SYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRIL 674

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
            ++YA    V EA+  +  ++++ + ++  +F  L+ ALC+S++V +AQE+      +  
Sbjct: 675 FKRYALAHLVSEAIAAYERLREFKL-RDETSFCNLIDALCESRHVDEAQELCFGKNRKLD 733

Query: 198 PDSKT--YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
            DS T  ++++L GW K     + R+ + EM   G   D+ +Y I +D+ CK+G+  +A+
Sbjct: 734 CDSSTKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAV 793

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + K M     +     Y+ ++H  G+   ++ A   F EM++ G   +V   N +I  F
Sbjct: 794 KLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLF 853

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           C+  +FK+ + +L  M  +   PN  T +     L    +  E   +F RMIK       
Sbjct: 854 CENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSL---EKPKEILVLFDRMIKYGVHPKM 910

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           DTY M+++ F + G L   F VW  M+     P+   ++ LI+ L +KG++  +    E+
Sbjct: 911 DTYVMLLRKFGRWGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEE 970

Query: 435 MIEKGIRP 442
           M+ KG+ P
Sbjct: 971 MVAKGLSP 978



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 33/239 (13%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +I+R + ++    +    +  M K GV ++L +++  +   CKS    KA +++  MK +
Sbjct: 743 LILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKK 802

Query: 196 FIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            +  D   Y+ ++   G    +  A  +F EM + GC P++VT   ++ + C+ GR  +A
Sbjct: 803 GMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDA 862

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHT----------------YGVENRIEDAV-------- 290
             ++  M    C+P    Y     +                YGV  +++  V        
Sbjct: 863 HMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGR 922

Query: 291 -----DTFL---EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                  FL   +ME+ G   +   YNALI A  +        +  ++M +KG++P  R
Sbjct: 923 WGFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR 981


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 164/316 (51%), Gaps = 2/316 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  I+    + ++V+ A+   N M+  G+  +   +N L+S LC S     A  + 
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMV 244

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            CM  R I PD  T++ L++   K+  +  A E++ EM+    +PDIVTY +++  LC  
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMY 304

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+DEA  +   M S  C P    YS+L++ Y    ++E  +  F EM + G++ +   Y
Sbjct: 305 SRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             LI  +C+A K      + K M   GV PN  T N++L+GL   G+ ++A  +   M K
Sbjct: 365 TVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              +AD  TY ++I+  C+ GE+  A+ ++  + LK   P + T++ ++ GL  KG+  +
Sbjct: 425 SGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGE 484

Query: 428 SCVLLEDMIEKGIRPS 443
           +  L   M E GI P+
Sbjct: 485 ADALFRKMKEDGILPN 500



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 184/368 (50%), Gaps = 7/368 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQI---MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           S+  +  ++ +++K+++Y +   +W+ +  +      N+ T  I++  + R  ++  A+ 
Sbjct: 80  SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPH--NLCTCNILLNCFCRCSQLSLALS 137

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
               M K G   ++  F  LL+  C+   +  A  +FD M +  + P+   Y+ +++G  
Sbjct: 138 FLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLC 197

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   +  A ++   M   G  PD VTY  ++  LC +GR D+A  +V  M      P  F
Sbjct: 198 KSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVF 257

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++ L+     E RI +A + + EM +  +  D+  Y+ LI   C  ++     ++   M
Sbjct: 258 TFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFM 317

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGEL 390
            SKG  P+  T +I++NG     + +   ++F  M +     +  TYT++I+ +C+ G+L
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKL 377

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             A +++K+M      P++ T++VL++GLCD G +  + V+L DM + G+     T+  +
Sbjct: 378 NVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNII 437

Query: 451 RKLLIKEG 458
            + + K G
Sbjct: 438 IRGMCKAG 445



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 182/380 (47%), Gaps = 6/380 (1%)

Query: 84  FKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKY 141
           + W + Q     H++   + ++    +  Q  +    +  M +     ++ TF  ++  +
Sbjct: 102 YLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGF 161

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDS 200
            R  ++ +A+Y F+ M + G   N+  +N ++  LCKSK V  A ++ + M+ D   PD+
Sbjct: 162 CRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDA 221

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+ L+ G         A  +   M      PD+ T+  ++D   K GR+ EA  + + 
Sbjct: 222 VTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEE 281

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M      P    YS+L++   + +R+++A   F  M   G   DV  Y+ LI  +CK+ K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKK 341

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYT 378
            ++  ++  +M+ +GV  N+ T  +++ G    G+ + A  +F+ M+  C    +  TY 
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMV-FCGVPPNIITYN 400

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           +++   C  G++EKA  +   M+       + T++++I G+C  G V+D+  L   +  K
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLK 460

Query: 439 GIRPSGETFGKLRKLLIKEG 458
           G+ P   T+  +   L K+G
Sbjct: 461 GLTPDIWTYTAMMLGLYKKG 480



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 250 RVDEALGIVKSMDSTVCRPTSFI--YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           ++D++L +   M    CRP   I  +S L+       + +  +  + +M+  GI  ++  
Sbjct: 61  KLDDSLDLFFHM--VQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCT 118

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
            N L+  FC+ ++       L  M   G  P+  T   +LNG        +A  +F RM+
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMV 178

Query: 368 KLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           ++  E +   Y  +I   C+  +++ A  +   M++    P   T++ LI+GLC+ G   
Sbjct: 179 EMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWD 238

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           D+  ++  M ++ I P   TF  L    +KEGR    + L E+M
Sbjct: 239 DATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM 282


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 189/350 (54%), Gaps = 11/350 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYT 153
           +V  ++S+I+ L K  +    + + + M  K  L  +  T+C ++    R  +  +A   
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGK 212
            + M       +  AFN  ++ L K  +V +A ++++ M +   +PD  T++IL+ G  K
Sbjct: 524 LDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACK 579

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             N  +A  +F EMV     PD++T+G ++D LCKAG+V+ A  I+  M +    P    
Sbjct: 580 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 639

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ LVH      RIE+A     EM  +G + D   Y +L+ A C+A++  +  +++ ++ 
Sbjct: 640 YNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELK 699

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
           S G  P++ T NI+++GL   G+T++A  V   M+ K    D  TY  +I   C+ G+LE
Sbjct: 700 SFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLE 759

Query: 392 KAFKVWKYM--KLKR-FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           +A ++   M  ++ R  +P++ T+SVLINGLC  G + ++  L+++M+ K
Sbjct: 760 EARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRK 809



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 194/397 (48%), Gaps = 14/397 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++ +   V  Y+++I+SL K    +    L   M ++  + NV T+ +++    +V +++
Sbjct: 244 ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRID 303

Query: 149 EAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTY 203
           EA      M +    V  N+  +N  L  LCK     +A E+   ++D   R  PD+ T+
Sbjct: 304 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           S L++G  K   +  A  +F +M+  G  P+++TY  +V+ LCKA +++ A  +++SM  
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 423

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    YSVLV  +   +R+++A++    M   G   +V  +N++I   CK+++   
Sbjct: 424 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 483

Query: 324 VYRVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM--M 380
            +++  DM  K G+ P+  T   +++GL   G   +A  +   M      D DTY     
Sbjct: 484 AFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM-----PDPDTYAFNCC 538

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I    + G++ +A +V+  M     +P   TF++LI G C  G    +  L E+M+ K +
Sbjct: 539 INGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 598

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +P   TFG L   L K G+ +  + + + M  L   P
Sbjct: 599 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 635



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 208/434 (47%), Gaps = 12/434 (2%)

Query: 36  KSISKIMLS-SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE 94
           +SIS+ + S  P   +  AL     R+ P +   +L +      L   F+ WA     ++
Sbjct: 49  RSISEALESLRPGQSVVAALRGCKGRLHPSVAAAILAQLDGNAELGTQFYDWAAALPGFK 108

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMR-KYARVQKVEEAVY 152
           H++ +++  +  L K        DL  +    R   N  T+  ++R  Y     VE  + 
Sbjct: 109 HTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLG 168

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF--DCMKDRFIPDSKTYSILLEGW 210
            F  ++    ++++A +N +L +LC++    +A EIF  +  +D   P   TY+ ++ G 
Sbjct: 169 FFRRIRS--SSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGL 226

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L    E+F E+V+ G +PD+VTY  ++D LCKAG ++EA  +   M S  C P  
Sbjct: 227 CKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNV 286

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVL 328
             YSVL++      RI++A +   EM +    +L ++  YN+ +   CK +       ++
Sbjct: 287 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 346

Query: 329 KDM--NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFC 385
           + +   S  V+P++ T + +++GL   G+ DEA  VF  MI      +  TY  ++   C
Sbjct: 347 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLC 406

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  ++E+A  + + M  K   P + T+SVL++  C    V ++  LL  M  +G  P+  
Sbjct: 407 KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 466

Query: 446 TFGKLRKLLIKEGR 459
           TF  +   L K  R
Sbjct: 467 TFNSIIDGLCKSDR 480



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 176/384 (45%), Gaps = 8/384 (2%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            Y  +V  Y++++  L K  + +    ++ +M  K +  +V T+ +++  + +  +V+EA
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 449

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--CMKDRFIPDSKTYSILLE 208
           +   + M   G T N+  FN ++  LCKS    +A ++FD   +K   +PD  TY  L++
Sbjct: 450 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLID 509

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  +     +A  +   M D    PD   +   ++ L K G V  AL +   M      P
Sbjct: 510 GLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVP 565

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               +++L+         E A   F EM    +  DV  + ALI   CKA + +    +L
Sbjct: 566 DKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL 625

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
             M + GV PN  T N +++GL   G  +EA +    M+   C  D+ TY  ++   C+ 
Sbjct: 626 DLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRA 685

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
              + A ++   +K   + P   T+++L++GL   G    +  +LE+M+ KG  P   T+
Sbjct: 686 SRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTY 745

Query: 448 GKLRKLLIKEGREDVLKFLQEKMN 471
             L   L K G  +  + L   M+
Sbjct: 746 NTLIDSLCKAGDLEEARRLHGDMS 769



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 188/381 (49%), Gaps = 20/381 (5%)

Query: 91   QNYEHSVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
            + +   V  Y+++I+SL K    +    +  D+ + +    + NV T+ +++    +V +
Sbjct: 736  KGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGR 795

Query: 147  VEEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSK 201
            ++EA      M +    V  N+  +N  L  LCK   + +A E+   ++D   R  PD+ 
Sbjct: 796  IDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTV 855

Query: 202  TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            T+S L++G  K      A  +F +M+  G  P++VTY ++++ LCK  +++ A  +++SM
Sbjct: 856  TFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESM 915

Query: 262  DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                  P    YSVLV  +   + +++A++    M   G   +V  +N++I   CK+++ 
Sbjct: 916  VDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQS 975

Query: 322  KNVYRVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM- 379
               +++  DM  K G+AP+  T   +++GL   G   +A  +   M      D DTY   
Sbjct: 976  GEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAM-----PDPDTYAFN 1030

Query: 380  -MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
              I    + G++ +A    + ++L+  +P   TF++LI G C  G    +  L E+M+ K
Sbjct: 1031 CCINGLSKLGDVSRALH--RMLELE-LVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 1087

Query: 439  GIRPSGETFGKLRKLLIKEGR 459
             ++P   TFG L   L K G+
Sbjct: 1088 NLQPDVMTFGALIDGLCKAGQ 1108



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 186/426 (43%), Gaps = 46/426 (10%)

Query: 91   QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
            +N +  V  + ++I+ L K  Q +   D+++ M    +  NV T+  ++    +  ++EE
Sbjct: 596  KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEE 655

Query: 150  AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLE 208
            A      M   G   +   +  L+ ALC++     A ++   +K   + PD+ TY+IL++
Sbjct: 656  ACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD 715

Query: 209  GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG------------------- 249
            G  K     +A  +  EMV  G +PD+VTY  ++D LCKAG                   
Sbjct: 716  GLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRC 775

Query: 250  -------------------RVDEALGIVKSMDSTVCR--PTSFIYSVLVHTYGVENRIED 288
                               R+DEA  +++ M    C   P    Y+  +     ++ + +
Sbjct: 776  CVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAE 835

Query: 289  AVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            A +    +      +  D   ++ LI   CK  +      V  DM + G  PN  T N++
Sbjct: 836  ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVL 895

Query: 347  LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
            +NGL    + + A+ +   M+ K    D  TY++++  FC+   +++A ++   M  +  
Sbjct: 896  MNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGC 955

Query: 406  IPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P++ TF+ +I+GLC      ++  + +DM ++ G+ P   T+  L   L + G     +
Sbjct: 956  TPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAE 1015

Query: 465  FLQEKM 470
             L + M
Sbjct: 1016 VLLDAM 1021



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 133/300 (44%), Gaps = 39/300 (13%)

Query: 100  YHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNV 156
            Y+S ++ L K        +L+ ++R   +    +  TF  ++    +  + +EA   F+ 
Sbjct: 820  YNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDD 879

Query: 157  MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
            M   G   N+  +N L++ LCK+  + +A  + + M D+ + PD  TYS+L++ + K  +
Sbjct: 880  MIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASH 939

Query: 216  LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD---------STVC 266
            +  A E+   M   GC P++VT+  ++D LCK+ +  EA  +   M           T C
Sbjct: 940  VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYC 999

Query: 267  R-----------------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
                                    P ++ ++  ++       +  A+   LE+E   ++ 
Sbjct: 1000 TLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELE---LVP 1056

Query: 304  DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
            D   +N LI   CKA  F+    + ++M +K + P+  T   +++GL   G+ +  + + 
Sbjct: 1057 DKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 10/240 (4%)

Query: 92   NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
             Y  +V  Y+ ++  L K  + +    ++ +M  K +  +V T+ +++  + +   V+EA
Sbjct: 884  GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEA 943

Query: 151  VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLE 208
            +   + M   G T N+  FN ++  LCKS    +A ++FD M  K    PD  TY  L++
Sbjct: 944  LELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLID 1003

Query: 209  GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            G  +     +A  +   M D    PD   +   ++ L K G V  AL  +  ++     P
Sbjct: 1004 GLFRTGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLGDVSRALHRMLELELV---P 1056

Query: 269  TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
                +++L+         E A   F EM    +  DV  + ALI   CKA + +  + ++
Sbjct: 1057 DKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|223950475|gb|ACN29321.1| unknown [Zea mays]
 gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 468

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 207/432 (47%), Gaps = 14/432 (3%)

Query: 40  KIMLSSPKVVLDTALDQSGIRVSPEIVEDVL---EKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I+   P   ++ AL   GI  + E+ E VL   E ++   + A  FF+WA   Q+  H+
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKS-AVRFFRWA--GQSVSHT 83

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVEEAVYT 153
             A++ +++ L K   ++ MWD + +M+ +    +++V TF  +   Y     +++A+  
Sbjct: 84  AYAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAA 143

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
            +VM +YG+  +  A N LLSA+C+ +   + AQ++F+  K    PD  T++ILLE W K
Sbjct: 144 LDVMDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEK 203

Query: 213 DPNLPRAREIFREM-VDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           + N  RA+ +F EM V  G +  ++  Y   +  L + G +DEA   ++ M S  C P  
Sbjct: 204 EGNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGI 263

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             +S  V     +    +AV  +  M  + G++ + +MY+A+IG  C A    +   +L 
Sbjct: 264 NFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLD 323

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGG 388
           +M   GV  NS T N IL G I   +  EA      M K  +   A      I +F +  
Sbjct: 324 EMPLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEF 383

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
               A  VW+ +      P+  +   LI GL + G  ++     ++MI+  +  S  T  
Sbjct: 384 NPSAAIDVWRCIVEHNITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTME 443

Query: 449 KLRKLLIKEGRE 460
            +++   K GR 
Sbjct: 444 NMKRGFAKAGRH 455



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 141/322 (43%), Gaps = 16/322 (4%)

Query: 94  EHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           +H   A +S++ ++ ++  + Q   D+    +     + +TF I++  + +      A  
Sbjct: 153 KHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGNAVRAKS 212

Query: 153 TFN--VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEG 209
            F   V++      N++A++  LS L +   + +A +    M+ +  +P    +S  ++ 
Sbjct: 213 VFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFFSTAVDL 272

Query: 210 WGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
             +  +   A  I+  MV + G  P+   Y  M+ + C AG +D+ALG++  M       
Sbjct: 273 VVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDEMPLNGVFA 332

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYNALIGAFCK---ANKFKNV 324
            S  Y+ ++  + +++R     ++FL EM KN  L   +   A I  F K    +   +V
Sbjct: 333 NSVTYNTILEGF-IKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNPSAAIDV 391

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           +R + + N   + P   +   ++ GL+  G   E  +    MI +  E    T   M + 
Sbjct: 392 WRCIVEHN---ITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTMENMKRG 448

Query: 384 FCQGGELEKAFKVWKYMKLKRF 405
           F + G  +    + +  +LKR+
Sbjct: 449 FAKAGRHQSYDNIAR--RLKRY 468


>gi|15233088|ref|NP_191695.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264589|sp|Q9M2C8.1|PP291_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g61360
 gi|6850903|emb|CAB71066.1| putative protein [Arabidopsis thaliana]
 gi|25054868|gb|AAN71923.1| unknown protein [Arabidopsis thaliana]
 gi|332646669|gb|AEE80190.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 498

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 188/395 (47%), Gaps = 22/395 (5%)

Query: 61  VSPEIVEDVLEKFRNA---GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           +SPE V +VL +   A   G  A  FFK++ K      +  ++   +  LA++R +   W
Sbjct: 64  LSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMRYFDQAW 123

Query: 118 DLVNAMRT--KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK------YGVTQNLAAF 169
            L+  +R     +L+ ++  I++ K A+    EE +  F  M+K      +GV +    F
Sbjct: 124 ALMAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDE----F 179

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL A C  + +++A+ IF+ +  RF PD KT +ILL G+ +  ++      + EMV  
Sbjct: 180 NILLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLLGFKEAGDVTATELFYHEMVKR 239

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  P+ VTYGI +D  CK     EAL + + MD      T  I + L+H  GV      A
Sbjct: 240 GFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKA 299

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F E+ K G+  D   YNAL+ +  K        +V+K+M  KG+ P+S T + +  G
Sbjct: 300 RQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIG 359

Query: 350 LIGRGETD-----EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++   E       E Y+  +   +       T  M++K+FC  GE+     +WKYM  K 
Sbjct: 360 MMKSKEFGFNGVCEYYQKMKE--RSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLEKG 417

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           + P  H   +L   LC +   +D+       +E+G
Sbjct: 418 YCPHGHALELLTTALCARRRANDAFECSWQTVERG 452


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 189/392 (48%), Gaps = 4/392 (1%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           + +S  +V  +L +FR+    A     WAE  + ++HS  AY   ++ L K +++  +  
Sbjct: 81  VNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYDMAVDILGKAKKWDRLKV 140

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
            V  MR  +++ + T   IMR++A   + EEAV  F+ + ++G+ +N  + N LL  LCK
Sbjct: 141 FVERMRGDKLVTLNTIAKIMRRFAGAGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCK 200

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
            K V +A+ +   +K    P++ T++I + GW K   +  A    +EM   G  P +++Y
Sbjct: 201 EKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 260

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++   C+     +   ++  M++    P S  Y+ ++ +   +   E+A+     M++
Sbjct: 261 TTIIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKR 320

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIGRGETD 357
           +G   D   YN LI    ++ + +   RV + +M   GV+ N+ T N ++       E D
Sbjct: 321 SGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEED 380

Query: 358 EAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSV 414
           +A  + + M    LC  D  TY  +++   + G++ +  K+ K M  K  +     T++ 
Sbjct: 381 KAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTF 440

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           LI  LC   I   +  L E+MI + I P   T
Sbjct: 441 LIQRLCRANICEWAYCLFEEMISQDITPRHRT 472


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 184/367 (50%), Gaps = 3/367 (0%)

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYT 153
           H V  ++ +I++L K  Q +    ++  M +  +   ET F  IM+ Y     ++ A+  
Sbjct: 201 HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGK 212
              M +YG        N L++  CK   + +A   I + + + F PD  TY+ L+ G  K
Sbjct: 261 KEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCK 320

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             +   A E+   M+  G +PDI TY  ++  LCK G ++EA+ I+  M S  C P +  
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ ++ +   ENR+++A +    +   GIL DV  +N+LI   C ++  K+   + ++M 
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMK 440

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELE 391
            KG  P+  T N++++ L    + +EA  + + M +  C  +   Y  +I  FC+   +E
Sbjct: 441 GKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIE 500

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A +++  M+L+       T++ LI+GLC    V D+  L++ MI +G+RP   T+  L 
Sbjct: 501 EAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLL 560

Query: 452 KLLIKEG 458
               K G
Sbjct: 561 THFCKTG 567



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 180/352 (51%), Gaps = 3/352 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y++++  L KI   +   ++V+AM    +  ++ T+  ++    ++ ++EEAV   + M
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                + N   +N ++S+LCK   V +A EI   +  +  +PD  T++ L++G     N 
Sbjct: 370 VSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNH 429

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++F EM   GC PD  TY +++D LC + +++EAL ++K M+   C     IY+ L
Sbjct: 430 KSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTL 489

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    RIE+A + F EME  G+  D   YN LI   CK+ + ++  +++  M  +G+
Sbjct: 490 IDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGL 549

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T N +L      G+  +A  + + M    C  D  TY  +I   C+ G ++ A +
Sbjct: 550 RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASR 609

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + + +++K  + + H ++ +I  L  +    ++  L  +M++K   P   T+
Sbjct: 610 LLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITY 661



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 173/342 (50%), Gaps = 3/342 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++    ++   + A+   + M   G+  ++  +N L+S LCK   + +A +I D M
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R   P++ TY+ ++    K+  +  A EI R +   G  PD+ T+  ++  LC +   
Sbjct: 370 VSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNH 429

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A+ + + M    CRP  F Y++L+ +     ++E+A++   EME NG   +V +YN L
Sbjct: 430 KSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTL 489

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FCK  + +    +  +M  +GV+ +S T N +++GL      ++A ++  +MI +  
Sbjct: 490 IDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGL 549

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY  ++  FC+ G+++KA  + + M      P + T++ LI+GLC  G V  +  
Sbjct: 550 RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASR 609

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           LL  +  KG+  +   +  + + L K  R  + ++  +E ++
Sbjct: 610 LLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLD 651



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 182/409 (44%), Gaps = 40/409 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+S+I  L K+ + +    +++ M ++    N  T+  I+    +  +V+EA     
Sbjct: 343 IYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIAR 402

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE------ 208
           ++   G+  ++  FN L+  LC S N + A ++F+ MK +   PD  TY++L++      
Sbjct: 403 LLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSR 462

Query: 209 -----------------------------GWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                                        G+ K+  +  A EIF EM   G + D VTY 
Sbjct: 463 KLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYN 522

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++D LCK+ RV++A  ++  M     RP  F Y+ L+  +     I+ A D    M  +
Sbjct: 523 TLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSS 582

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D+  Y  LI   CKA + +   R+L+ +  KG+       N ++  L  R  T EA
Sbjct: 583 GCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEA 642

Query: 360 YRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            R+FR M+   E  DA TY ++ +  C GG  + +A      M  +  IP   +F +L  
Sbjct: 643 MRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAE 702

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           GLC   +  D+ V L DMI +  + S      +R  L     +D L  L
Sbjct: 703 GLCTLSM-DDTLVKLVDMIMEKAKFSEREISTIRGFLKIRKFQDALSTL 750



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 182/398 (45%), Gaps = 10/398 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A   F WA KQ N+  S   Y  ++  L K   ++ M  ++  M+      +   F I +
Sbjct: 80  ALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFV 139

Query: 139 RKYARVQKVEEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
             Y + +  +E V    VM+ +Y +  +   +N LL+ L  +  ++  +     M  R I
Sbjct: 140 ESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRI 199

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             D  T++IL++   K   +  A  +  EM   G +PD  T+  ++    + G +D AL 
Sbjct: 200 RHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALR 259

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           I + M    C  T    +VL++ +  + RI+ A+    E    G   D   YN L+   C
Sbjct: 260 IKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLC 319

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K    K+   V+  M   G+ P+  T N +++GL   GE +EA ++  +M+ + C  +A 
Sbjct: 320 KIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAV 379

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY  +I   C+   +++A ++ + +  K  +P + TF+ LI GLC       +  L E+M
Sbjct: 380 TYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
             KG RP   T+  L   L    +      L+E +NLL
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRK------LEEALNLL 471


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 182/354 (51%), Gaps = 6/354 (1%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           ++ K  LNV +F I++    +V K+  A      M+ +GV+ N+  +N L+   CK   +
Sbjct: 147 IKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRI 206

Query: 183 ---RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
               KA  I   M  + I P+  TY+IL++G+ KD N+  A  +F EM   G  P++VTY
Sbjct: 207 GKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTY 266

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I+++ LC  G+VDEA+ +   M S+   P    ++VL++ +     + +A++ F +MEK
Sbjct: 267 NILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEK 326

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G+  +   Y  LI A+CK  + ++ + +   M  +G+ P   T N ++ GL  +G+   
Sbjct: 327 QGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKA 386

Query: 359 AYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  +   M+ K   AD  TY ++I   C+ GE  KA K+   M  K   PS  T++ L++
Sbjct: 387 ARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMD 446

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           G C +G +  + ++   M  KG + +  T   L K    +GR ED    L E +
Sbjct: 447 GYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEML 500



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 183/428 (42%), Gaps = 60/428 (14%)

Query: 69  VLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL------ 119
           +L++  N+G    L   +F W++K+    HS+     ++ SLA  ++Y  +         
Sbjct: 1   LLQQLLNSGADPELILRYFTWSQKEFKLSHSLELTFRILNSLAHTKKYSKIRSFLDKFVK 60

Query: 120 ------VNAMRTKRMLNVETFCI-------IMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
                 V+A+     ++ ++FC+       ++  + R  K+      F     YG   +L
Sbjct: 61  YEKDYSVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSL 120

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            + N LLS L K                             E    D        ++REM
Sbjct: 121 ISCNPLLSGLVK-----------------------------ESENGDMEF-----VYREM 146

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +      +++++ I+V+ LCK G+++ A  +++ M      P    Y+ L+  Y    RI
Sbjct: 147 IKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRI 206

Query: 287 ED--AVDTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
                 D  L EM   GI  +   YN LI  FCK        RV  +M  +G+ PN  T 
Sbjct: 207 GKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTY 266

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           NI++NGL   G+ DEA  +  +M+    E +  T+ ++I  FC+   + +A  ++  M+ 
Sbjct: 267 NILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEK 326

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           +   P+  T++ LI+  C  G + D+  L   MI++GI P   T+  L   L ++G    
Sbjct: 327 QGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKA 386

Query: 463 LKFLQEKM 470
            + L  +M
Sbjct: 387 ARSLMNEM 394



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  +++  + + + V EA+  FN M+K GV  N   +  L+ A CK   +  A  ++
Sbjct: 297 NVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALY 356

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M DR I P+  TY+ L+ G  +  ++  AR +  EMV    + D+VTY I++D LCK 
Sbjct: 357 NMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKK 416

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G   +A+ ++  M      P+   Y+ L+  Y  E  +  A+     ME+ G  A+V  +
Sbjct: 417 GESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTH 476

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           N LI  FC   + ++   +L +M  +G+ PN  T  II   ++ +G
Sbjct: 477 NVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 35/299 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+ I++       KV+EAV   + M    +  N+   N L++  CK+K V +A  +F
Sbjct: 262 NVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLF 321

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+ + + P++ TY+ L++ + KD  +  A  ++  M+D G  P++ TY  ++  LC+ 
Sbjct: 322 NDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRK 381

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V  A  ++  M S         Y++L+ +   +     AV    EM + G+      Y
Sbjct: 382 GDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTY 441

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N L+  +C+    +    V   M  KG   N  T N+++ G                   
Sbjct: 442 NTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKG------------------- 482

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                          FC  G LE A  +   M  +  +P+  T+ ++   + +KG V D
Sbjct: 483 ---------------FCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPD 526



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+ +I  L +    +    L+N M +K++  +V T+ I++    +  +  +AV   +
Sbjct: 368 VSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLD 427

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDP 214
            M + G+  +   +N L+   C+  N+R A  +   M+ +    +  T+++L++G+    
Sbjct: 428 EMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKG 487

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            L  A  +  EM++ G  P+  TY I+ + + + G V +  G
Sbjct: 488 RLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDIEG 529


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 195/422 (46%), Gaps = 3/422 (0%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           +  L     +  PE V  VL + ++    A  +F+W E++    H   +Y+S++  +A+ 
Sbjct: 53  ENTLSALSFKPQPEFVIGVLRRLKDVNR-AIEYFRWYERRTELPHCPESYNSLLLVMARC 111

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIM-RKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           R +  +  ++  M           CI M     +  K+ E      +M+K+      +A+
Sbjct: 112 RNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAY 171

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+ A     +      +F  M++  + P    ++ L+ G+ K+  +  A  +  EM  
Sbjct: 172 TTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS 231

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +  + DIV Y + +D   K G+VD A      +++   +P    Y+ ++      NR+++
Sbjct: 232 SSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDE 291

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           AV+ F  +EKN  +     YN +I  +  A KF   Y +L+   +KG  P+    N IL 
Sbjct: 292 AVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT 351

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
            L   G+ DEA +VF  M K    +  TY ++I M C+ G+L+ AF++   M+     P+
Sbjct: 352 CLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPN 411

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           + T +++++ LC    + ++C + E+M  K   P   TF  L   L K GR D    + E
Sbjct: 412 VRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYE 471

Query: 469 KM 470
           KM
Sbjct: 472 KM 473



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 189/375 (50%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       ++   + L+   R K  + +V  +  I+    ++ KV+EA+  F  M
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
           +K     NL+ +N L+  LC++  +  A E+ D M K    P+ +T +I+++   K   L
Sbjct: 370 KK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKL 428

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +F EM    C PD +T+  ++D L K GRVD+A  + + M  + CR  S +Y+ L
Sbjct: 429 DEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSL 488

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R ED    + +M       D+ + N  +    KA + +    + +++ ++  
Sbjct: 489 IKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRF 548

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P++R+ +I+++GLI  G  +E Y +F  M +  C  D   Y ++I  FC+ G++ KA++
Sbjct: 549 VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK K F P++ T+  +I+GL     + ++ +L E+   K I  +   +  L     
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E++
Sbjct: 669 KVGRIDEAYLILEEL 683



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 178/373 (47%), Gaps = 4/373 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + S+I+ L K+ +    + +   M  +    N   +  +++ +    + E+    +  M 
Sbjct: 450 FCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMI 509

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
               + +L   N  +  + K+    K + +F+ +K R F+PD+++YSIL+ G  K     
Sbjct: 510 NQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFAN 569

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              E+F  M + GC  D   Y I++D  CK G+V++A  +++ M +    PT   Y  ++
Sbjct: 570 ETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVI 629

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E +   I  +V +Y++LI  F K  +    Y +L+++  KG+ 
Sbjct: 630 DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT 689

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M +L C  +  TY ++I   C+  +  KAF  
Sbjct: 690 PNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVF 749

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           W+ M+ +   PS  +++ +I+GL   G ++++  L +     G  P    +  + + L  
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809

Query: 457 EGRE-DVLKFLQE 468
             R  D     +E
Sbjct: 810 GNRAMDAFSLFEE 822



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 182/376 (48%), Gaps = 10/376 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI  L K  +     ++   + + +R+     +  ++  Y    K +EA       +
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR 335

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             G   ++ A+N +L+ L K   V +A ++F+ MK    P+  TY+IL++   +   L  
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDT 395

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A E+   M   G  P++ T  IMVD LCK+ ++DEA  + + MD  VC P    +  L+ 
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G   R++DA   + +M  +    +  +Y +LI  F    + ++ +++ KDM ++  +P
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515

Query: 339 NSRTCNIILNGLIGRGETDEAYRVF-----RRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           + +  N  ++ +   GE ++   +F     RR +     DA +Y+++I    + G   + 
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV----PDARSYSILIHGLIKAGFANET 571

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           ++++  MK +  +     ++++I+G C  G V+ +  LLE+M  KG  P+  T+G +   
Sbjct: 572 YELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631

Query: 454 LIKEGREDVLKFLQEK 469
           L K  R D    L E+
Sbjct: 632 LAKIDRLDEAYMLFEE 647



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 191/428 (44%), Gaps = 38/428 (8%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           +L   R  G +      + E +++   ++  Y+ +I+ L +  +    ++L ++M+   +
Sbjct: 349 ILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGL 408

Query: 129 L-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             NV T  I++ +  + QK++EA   F  M     T +   F  L+  L K   V  A +
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYK 468

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +++ M D     +S  Y+ L++ +          +I+++M++  C+PD+      +D + 
Sbjct: 469 VYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMF 528

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           KAG  ++   + + + +    P +  YS+L+H         +  + F  M++ G + D  
Sbjct: 529 KAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN +I  FCK  K    Y++L++M +KG  P   T   +++GL      DEAY +F   
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 367 -IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT-------------- 411
             K  E +   Y+ +I  F + G +++A+ + + +  K   P+++T              
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708

Query: 412 ---------------------FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
                                + +LINGLC     + + V  ++M ++G++PS  ++  +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 451 RKLLIKEG 458
              L K G
Sbjct: 769 ISGLAKAG 776



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 35/263 (13%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K + +E +V  Y S+I+ LAKI +    + L    ++KR+ LNV  +  ++  + +V ++
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
           +EA      + + G+T NL  +N LL AL K++ +    E   C                
Sbjct: 674 DEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI---NEALVC---------------- 714

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
                          F+ M +  C P+ VTYGI+++ LCK  + ++A    + M     +
Sbjct: 715 ---------------FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMK 759

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P++  Y+ ++        I +A   F   + NG + D A YNA+I      N+  + + +
Sbjct: 760 PSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSL 819

Query: 328 LKDMNSKGVAPNSRTCNIILNGL 350
            ++   +G+  +++TC ++L+ L
Sbjct: 820 FEETRRRGLPIHNKTCVVLLDTL 842



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 13/295 (4%)

Query: 82  CFFKWAE-----------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-ML 129
           C FK  E           K + +    R+Y  +I  L K       ++L  +M+ +  +L
Sbjct: 526 CMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   + I++  + +  KV +A      M+  G    +  +  ++  L K   + +A  +F
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K + I  +   YS L++G+GK   +  A  I  E++  G  P++ T+  ++D L KA
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA 705

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             ++EAL   +SM    C P    Y +L++      +   A   + EM+K G+      Y
Sbjct: 706 EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
             +I    KA        +     + G  P+S   N ++ GL       +A+ +F
Sbjct: 766 TTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 2/167 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT-KRMLNVETFCIIMRKYARVQKVE 148
           Q+    ++  ++S++++L K  +         +M+  K   N  T+ I++    +V+K  
Sbjct: 685 QKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFN 744

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILL 207
           +A   +  MQK G+  +  ++  ++S L K+ N+ +A  +FD  K +  +PDS  Y+ ++
Sbjct: 745 KAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           EG         A  +F E    G      T  +++D L K   +++A
Sbjct: 805 EGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQA 851


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 179/366 (48%), Gaps = 3/366 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I  L K+ ++    +  +          V T+  I+    ++ +   A   F  M
Sbjct: 167 TFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKM 226

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
           ++ G   N+  +N L+ +LCK K V +A +IF  MK  R  PD  TY+ L++G       
Sbjct: 227 EEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRW 286

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  EM      P+I T+ ++VD +CK G+V EA G+ K+M      P    YS L
Sbjct: 287 KEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL 346

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ Y +   I +A   F  M   G   D   YN LI  +CKA +     ++  +M  +G+
Sbjct: 347 MYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGL 406

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFK 395
            P++   N +++GL   G   EA  +F+ M       D  TY+M++  FC+ G L KAF+
Sbjct: 407 TPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFR 466

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +++ M+     P +  +++LI+ +C  G + D+  L  ++  +G+ P+ + +  +   L 
Sbjct: 467 LFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLC 526

Query: 456 KEGRED 461
           KEG  D
Sbjct: 527 KEGLLD 532



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 166/331 (50%), Gaps = 2/331 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T  I++  ++ +Q+V+ A   F+ M K G+  +   FN L++ LCK     +A E F
Sbjct: 129 DIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFF 188

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D  +     P   TY+ ++ G  K      A  +F++M + GC P++VTY I++D LCK 
Sbjct: 189 DDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKD 248

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             V+EAL I   M +    P  F Y+ L+       R ++A     EM    I+ ++  +
Sbjct: 249 KLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTF 308

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N L+ A CK  K      V K M   GV P+  T + ++ G   R E  EA ++F  MI 
Sbjct: 309 NVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMIT 368

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K C+ DA +Y ++IK +C+   +++A +++  M  +   P    ++ LI+GLC  G + +
Sbjct: 369 KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLRE 428

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +  L ++M   G  P   T+  L     KEG
Sbjct: 429 AQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG 459



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 166/326 (50%), Gaps = 3/326 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +     +  Y+S+I+ L   R+++    L+N M +  ++ N+ TF +++    +  KV
Sbjct: 262 KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKV 321

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA   F  M + GV  ++  ++ L+        + +A+++FD M  +   PD+ +Y+IL
Sbjct: 322 SEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNIL 381

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+ K   +  A+++F EM+  G  PD V Y  ++  LC+ GR+ EA  + K+M S   
Sbjct: 382 IKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGN 441

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  F YS+L+  +  E  +  A   F  M+   +  D+AMYN LI A CK    K+  +
Sbjct: 442 LPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARK 501

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +  ++  +G+ PN +    I+N L   G  DEA   FR M    C  D  +Y ++I+ F 
Sbjct: 502 LFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFL 561

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHT 411
           Q  +  +A ++   M+ + F+    T
Sbjct: 562 QYKDESRAAQLIGEMRDRGFVAEAGT 587



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 157/322 (48%), Gaps = 6/322 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M+  G++ ++   + L+      + V  A  +F  M K    PD+ T++ L+ G  K   
Sbjct: 121 MELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGK 180

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
             +A E F +   +GC P + TY  +++ LCK G    A G+ K M+   C+P    Y++
Sbjct: 181 FAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI 240

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+ +   +  + +A+D F  M+   I  D+  YN+LI   C   ++K    +L +M S  
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + PN  T N++++ +   G+  EA  VF+ M ++  E D  TY+ ++  +    E+ +A 
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K++  M  K   P   ++++LI G C    + ++  L  +MI +G+ P    +  L   L
Sbjct: 361 KLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGL 420

Query: 455 IKEGR----EDVLKFLQEKMNL 472
            + GR    +D+ K +    NL
Sbjct: 421 CQLGRLREAQDLFKNMHSNGNL 442



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 2/265 (0%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA-LGIVKSMDSTVCRPTSFIY 273
           N+  A   F  M+     P I+ +  ++  + K G+   A + + K M+     P  +  
Sbjct: 74  NIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTL 133

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+L+  +    R++ A   F +M K G+  D   +N LI   CK  KF        D  +
Sbjct: 134 SILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEA 193

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            G  P   T   I+NGL   GET  A  +F++M +  C+ +  TY ++I   C+   + +
Sbjct: 194 SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNE 253

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++ YMK KR  P + T++ LI GLC+     ++  LL +M    I P+  TF  L  
Sbjct: 254 ALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVD 313

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEP 477
            + KEG+    + + + M  +  EP
Sbjct: 314 AICKEGKVSEAQGVFKTMTEMGVEP 338


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 193/411 (46%), Gaps = 41/411 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I++L+K  +      L+  M       +V TF  ++  + R+ +V E     + M 
Sbjct: 248 YQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMI 307

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQE------------------------------- 187
             G T N   +  L+  LCK+  + +AQ                                
Sbjct: 308 LKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATA 367

Query: 188 -IFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
            ++D M  + ++PD  T+S L+ G  K      A E+  +M   GC P++ TY I++D  
Sbjct: 368 FVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGF 427

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK G+++EA  I++ M +      +  Y+ L+       +I +A+D F EM   G   D+
Sbjct: 428 CKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDI 487

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             +N+LI   C+ ++ ++   + +DM  +GV  NS T N +++  + RGE  EA ++   
Sbjct: 488 FTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVND 547

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+ + C  D  TY  +IK  C+ G +EK   +++ M  K   PS+ T ++LING C  G 
Sbjct: 548 MLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGK 607

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           V ++   + DMI +G  P   T+  L   L K GR      +QE +NL  K
Sbjct: 608 VHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGR------IQEALNLFEK 652



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 171/340 (50%), Gaps = 3/340 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAV-YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           NV  F  ++  + R  ++ EA  + ++ M   G   ++  F+ L++ LCK      A E+
Sbjct: 345 NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALEL 404

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            + M  +   P+  TY+IL++G+ K   L  A  I REM+  G + + V Y  ++  LCK
Sbjct: 405 VNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCK 464

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G++ EAL +   M S  C+P  F ++ L+      + +EDA+  + +M   G++A+   
Sbjct: 465 HGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVT 524

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           +N LI AF +  + +   +++ DM  +G   +  T N ++  L   G  ++   +F  MI
Sbjct: 525 FNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMI 584

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K       T  ++I  FC  G++  A +  + M  + F P + T++ LINGLC +G + 
Sbjct: 585 RKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQ 644

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           ++  L E +  +GI+P   T+  L   L +EG  D   FL
Sbjct: 645 EALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFL 684



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 176/380 (46%), Gaps = 42/380 (11%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYA 142
           FKWA  Q+ Y HS   Y+ +I+ L     ++++  L+  M+ + ++  E+ F +IM+ Y 
Sbjct: 91  FKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYG 150

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
           R     +A                            ++ +   + ++ C      P  ++
Sbjct: 151 RAGLPGQA----------------------------TRLLLDMKGVYCCE-----PSFRS 177

Query: 203 YSILLEGW--GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           Y+++L+    G  P++  A  +F +M+  G +P+  T+G+++  LC    VD A  +++ 
Sbjct: 178 YNVVLDVLVVGNCPSV--ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRD 235

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C P S IY  L+      +R+++A+    EM   G   DV  +N +I  FC+ N+
Sbjct: 236 MTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNR 295

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380
                +++  M  KG  PN  T   +++GL      DEA  +     K+   +   +  +
Sbjct: 296 VLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLS---KVPGPNVVHFNTL 352

Query: 381 IKMFCQGGELEKAFK-VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +  F + G L +A   V+  M    ++P + TFS L+NGLC KG+   +  L+ DM  KG
Sbjct: 353 VNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG 412

Query: 440 IRPSGETFGKLRKLLIKEGR 459
            +P+  T+  L     K+G+
Sbjct: 413 CKPNLNTYTILIDGFCKKGQ 432



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 2/259 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + +  +   Y+++I +L K  +     D+   M +K    ++ TF  ++    RV ++E+
Sbjct: 446 KGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMED 505

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLE 208
           A+  +  M   GV  N   FN L+ A  +   +++A ++ + M  R  P D  TY+ L++
Sbjct: 506 ALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIK 565

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
              K   + +   +F EM+  G  P I+T  I+++  C AG+V  AL  ++ M      P
Sbjct: 566 ALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSP 625

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y+ L++      RI++A++ F +++  GI  D   YN LI   C+   F +   +L
Sbjct: 626 DIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLL 685

Query: 329 KDMNSKGVAPNSRTCNIIL 347
                 G  PN  T NI++
Sbjct: 686 YRGVENGFVPNDVTWNILV 704



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 2/223 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++S+I  L ++ + +    L   M  + ++ N  TF  ++  + R  +++EA+   N
Sbjct: 487 IFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVN 546

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M   G   +   +NGL+ ALCK+  V K   +F+ M +    P   T +IL+ G+    
Sbjct: 547 DMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAG 606

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E  R+M+  G +PDIVTY  +++ LCK GR+ EAL + + + +   +P S  Y+
Sbjct: 607 KVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYN 666

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            L+     E   +DA        +NG + +   +N L+  F K
Sbjct: 667 TLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGK 709


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 206/397 (51%), Gaps = 5/397 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF WA++   Y H    Y  M+E L+K +  Q    ++  M  +R+ L  E F  +M
Sbjct: 229 ALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVM 288

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
             Y+R  ++ +A+    +MQK GV  NL+  N  +  L     ++KA    + M    I 
Sbjct: 289 VSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIA 348

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  TY+ L++G+     + +A E+  +M   GC+PD V+Y  ++ +LC+  R++E   +
Sbjct: 349 PNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIREL 408

Query: 258 VKSMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +K M + +   P    Y+ L+         ++A++   E EK     D   Y+A++ A+C
Sbjct: 409 IKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYC 468

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           K  K +    ++ +M SKG  P+  T   +L+G    G+ D+A ++ ++M K  C+ +A 
Sbjct: 469 KEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAV 528

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TYT  +   C+ G+  +A K+    + + + P+  T+SV+++GL  +G ++++C ++ +M
Sbjct: 529 TYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREM 588

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           I KG  P+      L   L ++G+  +  + L+E MN
Sbjct: 589 IGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMN 625



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 167/368 (45%), Gaps = 38/368 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +++ Y  V +V++A+   + M   G + +  ++  ++  LC+ K + + +E+ 
Sbjct: 350 NVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELI 409

Query: 190 DCMK--DRFIPDSKTYSILLE-----GWG------------------------------K 212
             M+   + +PD  TY+ L++     G G                              K
Sbjct: 410 KKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCK 469

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +  + +A+E+  EM   GC+PD+VTY  ++D  C+ G++D+A  +++ M    C+P +  
Sbjct: 470 EGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVT 529

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+  ++      +  +A       E+     +   Y+ ++    +  K      V+++M 
Sbjct: 530 YTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMI 589

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGELE 391
            KG  PN    N++++ L   G+  EA ++ +  M K C  +   +T +I  FCQ  +LE
Sbjct: 590 GKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLE 649

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +   M L    P   T++ LI+ L     + ++  L   M+ +G+ PS  T+  + 
Sbjct: 650 AALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVI 709

Query: 452 KLLIKEGR 459
               ++GR
Sbjct: 710 HQYCRKGR 717



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 164/334 (49%), Gaps = 6/334 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRT--KRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           +Y++++  L + ++   + +L+  M+T  K + +  T+  +++  ++    +EA+     
Sbjct: 388 SYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQE 447

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
            +K     +   ++ ++ A CK   ++KA+E+   M  +   PD  TY+ +L+G+ +   
Sbjct: 448 AEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGK 507

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L +A+++ ++M    C P+ VTY   ++ LC+ G+  EA  ++   +     P +  YSV
Sbjct: 508 LDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSV 567

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +VH    E ++ +A D   EM   G   +    N L+ + C+  K +   ++LK+  +KG
Sbjct: 568 VVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKG 627

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQGGELEKA 393
            A N      +++G   + + + A  +   M  LC    D  TYT +I    +   +E+A
Sbjct: 628 CAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY-LCNKHPDTVTYTALIDALAKTDRIEEA 686

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
            ++   M  +  +PS  T+  +I+  C KG V D
Sbjct: 687 TELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVED 720



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 165/376 (43%), Gaps = 36/376 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y +++ +  K  + Q   +LV+ M +K    +V T+  ++  + R+ K+++A      M 
Sbjct: 460 YSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMY 519

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDPNLP 217
           K+    N   +   L+ LC++    +A+++ +  ++ +  P++ TYS+++ G  ++  L 
Sbjct: 520 KHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLN 579

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++ REM+  G  P+ V   ++V  LC+ G+  EA  ++K   +  C      ++ ++
Sbjct: 580 EACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVI 639

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H +  ++ +E A+    +M       D   Y ALI A  K ++ +    +   M  +G+ 
Sbjct: 640 HGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLV 699

Query: 338 PNSRT--------C-------------------------NIILNGLIGRGETDEAYRVFR 364
           P+  T        C                         N+++  L   G  +EA  +  
Sbjct: 700 PSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQTAYNLVIEKLCKFGYLEEANSLLG 759

Query: 365 RMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            +++     DA T  ++++ +   G    A+KV   M  +  IP +     +   L  +G
Sbjct: 760 EVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVACRMFNRNLIPDLKLCEKVSKRLVVEG 819

Query: 424 IVSDSCVLLEDMIEKG 439
            + ++  L+   +E+G
Sbjct: 820 KLEEADRLVLRFVERG 835


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 194/375 (51%), Gaps = 4/375 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y ++I +L+     ++   ++  M  +    N+ TF  +++ +       EA+  +
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFW 339

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
           + M + GV  N+ A+N L+  LC  +++  A  +F+ M+ +   P+ +TYS L++G+ K 
Sbjct: 340 DRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKA 399

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A E++  M+  GC+P++V Y  MVDVLC+    ++A  ++++M    C P +  +
Sbjct: 400 GDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTF 459

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +       R++ A+  F +M  +G   +   YN L+ +  K  +F   + ++KDM  
Sbjct: 460 NTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEH 519

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           +G+  N  T N I+ G    G   EA  +  +M ++  + DA T  ++I  +C+ G++  
Sbjct: 520 RGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNI 579

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-R 451
           A ++   +   ++ P +  ++ LI+G+C    V ++ V L  M+ +GI P+  T+  L R
Sbjct: 580 AIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVR 639

Query: 452 KLLIKEGREDVLKFL 466
            L    G    ++FL
Sbjct: 640 HLFSNMGHSGAVQFL 654



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 198/405 (48%), Gaps = 7/405 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIM 116
           GI  S ++   V+  +R AG+       +   Q    + +V+ Y+ ++++L    ++Q++
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
             + + M+   M  NV T+ I+++   +  +V+ A      M   G   +  ++  L+S+
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225

Query: 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           LCK   V++A+E    +   F P    Y+ L+ G  K+     A ++  EM++ G +P++
Sbjct: 226 LCKLGKVKEARE----LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNV 281

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           ++Y  +++ L  AG V+ +L ++  M +  C P    ++ L+  + ++    +A+D +  
Sbjct: 282 ISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDR 341

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M + G++ +V  YNAL+   C      +   V   M   G  PN RT + +++G    G+
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            D A  V+  MI   C  +   YT M+ + C+     +A+ + + M+++   P+  TF+ 
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            I GLC  G V  +  + + M   G  P+  T+ +L   L+K+ R
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRR 506



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 196/434 (45%), Gaps = 45/434 (10%)

Query: 68  DVLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           DVL++ ++    TLA  +FK     ++++H+   Y  MIE LA  R+   +  L+  M+ 
Sbjct: 45  DVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           + +  + + F  ++  Y R    E+A+ TF  MQ + V   +  +N +L AL      + 
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 185 AQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
              I+  M KD   P+  TY+ILL+   K+  +  A ++  EM   GC+PD V+Y  ++ 
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LCK G+V EA  +  S       P+  +Y+ L++    E   E+A     EM   GI  
Sbjct: 225 SLCKLGKVKEARELAMSF-----TPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDP 279

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +V  Y  +I A   A   +    VL  M ++G +PN  T   ++ G   +G + EA   +
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFW 339

Query: 364 RRMIK----------------LCE--------------------ADADTYTMMIKMFCQG 387
            RMI+                LC                      +  TY+ +I  + + 
Sbjct: 340 DRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKA 399

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+L+ A +VW +M      P++  ++ +++ LC   + + +  L+E+M  +   P+  TF
Sbjct: 400 GDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTF 459

Query: 448 GKLRKLLIKEGRED 461
               K L   GR D
Sbjct: 460 NTFIKGLCGSGRVD 473



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 10/238 (4%)

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           +TY +M++ L     +D    +++ M  +   C    FI   ++ +Y      E A+ TF
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFIS--VIGSYRRAGSSEQALKTF 134

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M+   +   V +YN ++ A    N+F+ +  +  +M   G+ PN  T NI+L  L   
Sbjct: 135 YRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKN 194

Query: 354 GETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
              D A+++   M  K C+ D  +YT +I   C+ G++++A ++        F PS+  +
Sbjct: 195 NRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL-----AMSFTPSVPVY 249

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + LING+C +    ++  LL++M+ KGI P+  ++  +   L   G  ++   +  KM
Sbjct: 250 NALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKM 307


>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
 gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
          Length = 520

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 177/345 (51%), Gaps = 8/345 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           A+H  + +  K R++ + W +V  MR + +L      I+M +YA   +V +AV TF+VM+
Sbjct: 138 AWHLAVWAAGKARRFDLAWAVVRRMRNRGVLTGRAMVILMERYAAANEVNKAVKTFDVME 197

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW-GKDPNL 216
           K+ V  + + F  LL ALCKSKN+  A+E+   ++ +F P  ++ ++I+L+GW     +L
Sbjct: 198 KFKVESDQSVFYSLLRALCKSKNIEDAEELL-LLRKKFFPLSAEGFNIILDGWCNVITDL 256

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ ++REM +    PD ++Y +M+    K G + + L +   M      P   +Y+ L
Sbjct: 257 AEAKRVWREMSNHCITPDGMSYTLMISCFSKVGSLFDTLRVYDEMKKRGWIPGIGVYNSL 316

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V+    EN ++DA + F ++   G+  DV  YN++I   C++ K      V++ M  KG+
Sbjct: 317 VYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNSMIVPLCESCKLDEARVVMESMILKGI 376

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P   T +  L     +   DE+ ++ ++M +  C   +DT+ M+   F    E   A +
Sbjct: 377 VPTISTYHAFLK----QEGIDESLKLLQKMKEDGCGPKSDTFLMLFDKFFLLNESGNALR 432

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           VW  M+  +  P    +  ++ GL   G +  +    ++M EKG 
Sbjct: 433 VWNEMRKYKISPVRSHYMTVVEGLVKHGCIPRALEYYDEMKEKGF 477



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G  P    + + V    KA R D A  +V+ M +     T     +L+  Y   N +  
Sbjct: 130 AGLPPPADAWHLAVWAAGKARRFDLAWAVVRRMRNRGVL-TGRAMVILMERYAAANEVNK 188

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           AV TF  MEK  + +D +++ +L+ A CK+   ++   +L  +  K    ++   NIIL+
Sbjct: 189 AVKTFDVMEKFKVESDQSVFYSLLRALCKSKNIEDAEELLL-LRKKFFPLSAEGFNIILD 247

Query: 349 GLIGR-GETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           G      +  EA RV+R M   C   D  +YT+MI  F + G L    +V+  MK + +I
Sbjct: 248 GWCNVITDLAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGSLFDTLRVYDEMKKRGWI 307

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P +  ++ L+  L  +  V D+  +   + ++G++P  ET+  +   L +  + D  + +
Sbjct: 308 PGIGVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNSMIVPLCESCKLDEARVV 367

Query: 467 QEKMNL 472
            E M L
Sbjct: 368 MESMIL 373



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 12/236 (5%)

Query: 114 QIMWDLVNAMRTKRMLNVE-------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
            ++ DL  A R  R ++         ++ +++  +++V  + + +  ++ M+K G    +
Sbjct: 251 NVITDLAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGSLFDTLRVYDEMKKRGWIPGI 310

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +N L+  L +   V+ A  IF  + D  + PD +TY+ ++    +   L  AR +   
Sbjct: 311 GVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNSMIVPLCESCKLDEARVVMES 370

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M+  G  P I TY   +    K   +DE+L +++ M    C P S  + +L   + + N 
Sbjct: 371 MILKGIVPTISTYHAFL----KQEGIDESLKLLQKMKEDGCGPKSDTFLMLFDKFFLLNE 426

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +A+  + EM K  I    + Y  ++    K            +M  KG A +++
Sbjct: 427 SGNALRVWNEMRKYKISPVRSHYMTVVEGLVKHGCIPRALEYYDEMKEKGFASDTQ 482


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 185/393 (47%), Gaps = 13/393 (3%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I  ++L +    L   L++  +  +P +V+ VL+   N G  A  FFK  +    Y H 
Sbjct: 41  TIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHV 100

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
             ++   I+   ++R Y+ +W LV+ MRT+R+  N +TF II  +Y    K + A+  F 
Sbjct: 101 SSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFF 160

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M ++G  Q+L +FN +L  LCKSK V  A  ++F   + RF        ILL+G+ +  
Sbjct: 161 SMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGRF-------RILLKGFFRAG 213

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A E F +M    C  D+VTY  +V     AG V +A  +   M      P+   Y+
Sbjct: 214 QLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYN 273

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
             +     ++ +E+A+  F EM + G + +   YN +I   C   + +     +  M   
Sbjct: 274 AFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDD 333

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK-MFC--QGGEL 390
              PN +  N+++       E ++   VF +M    C  + DTY ++I  MF   +   L
Sbjct: 334 ECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYL 393

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
             A K+   M  + F+P   TF+ +++GL   G
Sbjct: 394 LTAGKLLIEMVERGFLPRKFTFNRVLDGLLLTG 426



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 33/331 (9%)

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
           ++F+  +    + ++ +    + D M+ R + P+ KT++I+ E +       RA +IF  
Sbjct: 102 SSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFS 161

Query: 226 MVDTGCNPDIVTYGIMVDVLCK----------------------------AGRVDEALGI 257
           M + GC  D+ ++  ++DVLCK                            AG++ EA   
Sbjct: 162 MHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGRFRILLKGFFRAGQLKEAWEF 221

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M    C      Y+ +VH +GV   +  A   F EM   G+L  VA YNA I   CK
Sbjct: 222 FLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCK 281

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADT 376
            +  +N   V ++M  KG  PNS T N+++ GL   G  ++A     RM    CE +   
Sbjct: 282 KDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQI 341

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLE 433
           Y ++I+ FC   E+EK   V++ M     +P++ T+++LI+ +  +     +  +  LL 
Sbjct: 342 YNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLI 401

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           +M+E+G  P   TF ++   L+  G +D  K
Sbjct: 402 EMVERGFLPRKFTFNRVLDGLLLTGNQDFAK 432



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 129/289 (44%), Gaps = 32/289 (11%)

Query: 199 DSKTYSILLEGWGKD--PNL------------PRAREIFREMVDTGCNPDIVT-YGIMVD 243
           DS+T +  LE +  +  PNL            P+A + F+ +        + + +   +D
Sbjct: 50  DSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAID 109

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           +  +         +V  M +    P    ++++   Y    + + A+  F  M ++G + 
Sbjct: 110 IAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQ 169

Query: 304 DVAMYNALIGAFCKANKFK----NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           D+  +N ++   CK+ + +     +++V +               I+L G    G+  EA
Sbjct: 170 DLNSFNTILDVLCKSKRVEMADNKLFKVFRG-----------RFRILLKGFFRAGQLKEA 218

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
           +  F +M K  CE D  TYT ++  F   GE+ KA +V+  M  +  +PS+ T++  I  
Sbjct: 219 WEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQV 278

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
           LC K  V ++  + E+M+ KG  P+  T+  + + L   GR E  ++F+
Sbjct: 279 LCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFM 327


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 182/352 (51%), Gaps = 3/352 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++S++  L +I   +   ++++ M  +    ++ T+  ++    ++ +VEEAV   N M
Sbjct: 318 TFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                + N   +N L+S LCK   V +A E+   +  +  +PD  T++ L++G     N 
Sbjct: 378 ILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNH 437

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+F EM   GC+PD  TY +++D LC  GR++EAL ++K M+S+ C      Y+ L
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    RIE+A + F EME  GI  +V  YN LI   CK  + +   +++  M  +G+
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T N +L      G+  +A  + + M    CE D+ TY  +I    + G +E A +
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + + ++LK  + +  T++ +I  L  +   S++  L  +M+EKG  P   T+
Sbjct: 618 LLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTY 669



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 197/412 (47%), Gaps = 6/412 (1%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121
           +P+ + D L +  +  ++      WA KQ N+  S   Y  ++  L K   +  M  ++ 
Sbjct: 71  TPKQLRDALRRQSDEDSI-LDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQ 129

Query: 122 AMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKS 179
            M+ T   +   TF I++  YA+ +  +EAV   ++M++ +G+  +   +N LL+ L   
Sbjct: 130 EMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDG 189

Query: 180 KNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             ++  + +   M  R I PD  T++IL++   +   +  A  +  EM   G +PD  T+
Sbjct: 190 NKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTF 249

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++    + G ++ AL I + M +  C  ++   +VLVH Y  E RIE+ +    EM  
Sbjct: 250 TTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSN 309

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G   D   +N+L+   C+    K+   +L  M  +G  P+  T N ++ GL   GE +E
Sbjct: 310 EGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEE 369

Query: 359 AYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  +  +MI +    +  TY  +I   C+  ++E+A ++ + +  K  +P + TF+ LI 
Sbjct: 370 AVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 429

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           GLC       +  L E+M  KG  P   T+  L   L   GR E+ L  L+E
Sbjct: 430 GLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKE 481



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 179/365 (49%), Gaps = 3/365 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  ++ +I++L +  Q +    ++  M +  +   E TF  +M+ +     +  A+    
Sbjct: 211 VTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIRE 270

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   G   +    N L+   CK   + +     D M +  F PD  T++ L+ G  +  
Sbjct: 271 QMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIG 330

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A EI   M+  G +PDI TY  ++  LCK G V+EA+ I+  M      P +  Y+
Sbjct: 331 HVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYN 390

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+ T   EN++E+A +    +   GIL DV  +N+LI   C  N  +    + ++M +K
Sbjct: 391 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK 450

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G  P+  T N++++ L  RG  +EA  + + M    C  +  TY  +I  FC+   +E+A
Sbjct: 451 GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEA 510

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +++  M+L+    ++ T++ LI+GLC    V ++  L++ M+ +G++P   T+  L   
Sbjct: 511 EEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTY 570

Query: 454 LIKEG 458
             + G
Sbjct: 571 FCRAG 575



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 170/341 (49%), Gaps = 3/341 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++    R+  V+ A+   +VM + G   ++  +N L+  LCK   V +A EI + M
Sbjct: 318 TFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R F P++ TY+ L+    K+  +  A E+ R +   G  PD+ T+  ++  LC     
Sbjct: 378 ILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNH 437

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A+ + + M +  C P  F Y++L+ +     R+E+A+    EME +G   +V  YN L
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FCK  + +    +  +M  +G++ N  T N +++GL      +EA ++  +M+ +  
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY  ++  FC+ G+++KA  + + M      P   T+  LI GL   G V  +  
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           LL  +  KG+  + +T+  + K L +E R  + ++  +E M
Sbjct: 618 LLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMM 658



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 35/326 (10%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  ++S+I+ L     +++  +L   M+TK     E T+ +++       ++EEA+    
Sbjct: 421 VCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLK 480

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M+  G ++N+  +N L+   CK+K + +A+EIFD M+ + I  +  TY+ L++G  K+ 
Sbjct: 481 EMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNR 540

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A ++  +M+  G  PD  TY  ++   C+AG + +A  IV++M S  C P S  Y 
Sbjct: 541 RVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYG 600

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+       R+E A      ++  G++     YN +I A  +  +     R+ ++M  K
Sbjct: 601 TLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEK 660

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
           G  P++ T  ++  G                   LC                GG + +A 
Sbjct: 661 GDPPDAVTYKVVFRG-------------------LCSG--------------GGPIGEAV 687

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLC 420
                M  K F+P   +F +L  GLC
Sbjct: 688 DFLVEMTDKGFLPDFSSFLMLAEGLC 713



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 10/193 (5%)

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           E+ I D +D +   + N + + V +Y  ++    K   F ++ RVL++M   G      T
Sbjct: 85  EDSILDLLD-WASKQPNFVPSSV-IYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGT 142

Query: 343 CNIILNGLIGRGETDEAYRVFRRM-----IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
             I++         DEA  V   M     +KL   DA TY  ++ +   G +L+    V 
Sbjct: 143 FLILIESYAKFELFDEAVAVVDIMEEEFGLKL---DAFTYNFLLNVLVDGNKLKLVEIVN 199

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  +   P + TF++LI  LC    +  + +++E+M   G+ P  +TF  L +  I+E
Sbjct: 200 SRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEE 259

Query: 458 GREDVLKFLQEKM 470
           G  +    ++E+M
Sbjct: 260 GNMNGALRIREQM 272



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+S++    +    +   D+V  M +     +  T+  ++   ++  +VE A      +
Sbjct: 563 TYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTV 622

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW--GKDP 214
           Q  G+      +N ++ AL + K   +A  +F + M+    PD+ TY ++  G   G  P
Sbjct: 623 QLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGP 682

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
            +  A +   EM D G  PD  ++ ++ + LC     D  + +V
Sbjct: 683 -IGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLV 725


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 189/372 (50%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  + ++  Y  ++  L K     +  +L+N M   ++  +V  F  I+    + + V+
Sbjct: 180 QRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVD 239

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           +A+  F  M+  G+  N+  ++ L+S LC       A ++  D ++ +  P+  T++ L+
Sbjct: 240 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 299

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+     A +++ +M+    +PDI TY  +V+  C   R+D+A  + + M S  C 
Sbjct: 300 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 359

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+  +    R+ED  + F EM   G++ D   Y  LI          N  +V
Sbjct: 360 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 419

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S GV P+  T +I+L+GL   G+ ++A  VF  M K   + D   YT MI+  C+
Sbjct: 420 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 479

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++  + ++  + LK   P++ T++ +I+GLC K ++ ++  LL+ M E G  P+  T
Sbjct: 480 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGT 539

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 540 YNTLIRAHLRDG 551



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 187/369 (50%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK++++ ++  L   M R + +  + T+ I++  + R  ++  A+   
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 105

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 106 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 165

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC P++VTYG++V+ LCK G  D AL ++  M++        I+
Sbjct: 166 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 225

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ +      ++DA++ F EME  GI  +V  Y++LI   C   ++ +  ++L DM  
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           K + PN  T N +++  +  G+  EA +++  MIK   + D  TY  ++  FC    L+K
Sbjct: 286 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 345

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++++M  K   P + T++ LI G C    V D   L  +M  +G+     T+  L +
Sbjct: 346 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 405

Query: 453 LLIKEGRED 461
            L  +G  D
Sbjct: 406 GLFHDGDCD 414



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 175/358 (48%), Gaps = 7/358 (1%)

Query: 68  DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           D L K+R+    A   FK  E  +    +V  Y S+I  L    ++     L++ M  K+
Sbjct: 230 DSLCKYRHVDD-ALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 128 M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +  N+ TF  ++  + +  K  EA   ++ M K  +  ++  +N L++  C    + KA+
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 347

Query: 187 EIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           ++F+ M  KD F PD  TY+ L++G+ K   +    E+FREM   G   D VTY  ++  
Sbjct: 348 QMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 406

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L   G  D A  + K M S    P    YS+L+       ++E A++ F  M+K+ I  D
Sbjct: 407 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 466

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           + +Y  +I   CKA K  + + +   ++ KGV PN  T N +++GL  +    EAY + +
Sbjct: 467 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 526

Query: 365 RMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +M +     ++ TY  +I+   + G+   + ++ + M+  RF+    T  ++ N L D
Sbjct: 527 KMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHD 584



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 8/301 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNV 156
            ++++I++  K  ++     L + M  KR ++ + F    ++  +    ++++A   F  
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDM-IKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 352

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M       ++  +N L+   CKSK V    E+F  M  R  + D+ TY+ L++G   D +
Sbjct: 353 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 412

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++F++MV  G  PDI+TY I++D LC  G++++AL +   M  +  +   +IY+ 
Sbjct: 413 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 472

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++       +++D  D F  +   G+  +V  YN +I   C     +  Y +LK M   G
Sbjct: 473 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 532

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKA 393
             PNS T N ++   +  G+   +  + R M + C    DA T  ++  M    G L+K+
Sbjct: 533 PLPNSGTYNTLIRAHLRDGDKAASAELIREM-RSCRFVGDASTIGLVANML-HDGRLDKS 590

Query: 394 F 394
           F
Sbjct: 591 F 591



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 143/324 (44%), Gaps = 35/324 (10%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+R      K+++A+  F  M K     ++  FN LLSA+ K K        FD +    
Sbjct: 18  ILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKK-------FDVV---- 66

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                              +    ++ R  +  G    + TY I+++  C+  ++  AL 
Sbjct: 67  -------------------ISLGEKMQRLEIVHG----LYTYNILINCFCRRSQISLALA 103

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M      P+    S L++ Y    RI DAV    +M + G   D   +  LI    
Sbjct: 104 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 163

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
             NK      ++  M  +G  PN  T  +++NGL  RG+TD A  +  +M     EAD  
Sbjct: 164 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 223

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            +  +I   C+   ++ A  ++K M+ K   P++ T+S LI+ LC  G  SD+  LL DM
Sbjct: 224 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 283

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR 459
           IEK I P+  TF  L    +KEG+
Sbjct: 284 IEKKINPNLVTFNALIDAFVKEGK 307



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++DA+  F  M K+  L  +  +N L+ A  K  KF  V  + + M    +     T N
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I++N    R +   A  +  +M+KL  E    T + ++  +C G  +  A  +   M   
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ LI+GL      S++  L++ M+++G +P+  T+G +   L K G  D+ 
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 464 KFLQEKM 470
             L  KM
Sbjct: 207 LNLLNKM 213


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 180/347 (51%), Gaps = 3/347 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S+I+   K    + +  LV+ MR      +V T+  ++  +++  ++E+A   F 
Sbjct: 235 VVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFG 294

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M++ GV  N+  F+  + A CK   V++A ++F  M+ R  +P+  TY+ L++G  K  
Sbjct: 295 EMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 354

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  EMV  G  P++VTY +MVD LCK G+V EA  ++  M+    +    +Y+
Sbjct: 355 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYT 414

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H + + N  E A+D   +M+  G+  DV++Y  LI   CK  K      +L  M   
Sbjct: 415 TLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGC 474

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKA 393
           G+ PN+     I++ L   G+  EA  +  +++    + +  TY  +I   C+ G + +A
Sbjct: 475 GLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEA 534

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
              +  M+     P++  ++ LI+G C  G ++ +  L+ +MI+KG+
Sbjct: 535 ISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGM 581



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 167/360 (46%), Gaps = 10/360 (2%)

Query: 107 LAKIRQYQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           L+ +  + ++ D V A+   R L    N  T   I+ + AR ++       F+++     
Sbjct: 141 LSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLP---- 196

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRARE 221
             N+  FN ++  LCK   + +A+ +F  MK     PD  TY+ L++G+GK  +L    +
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +  EM  +GC  D+VTY  +++   K GR+++A      M           +S  V  + 
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            E  +++A+  F +M   G++ +   Y +L+   CKA +  +   +L +M  +G+ PN  
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T  ++++GL   G+  EA  V   M +   +A+   YT +I         E+A  +   M
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           K K     +  +  LI GLC    V ++  LL  M   G+RP+   +  +   L K G+E
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE 496



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 4/325 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
           +++AV     +++  V  N    N +L  L +++     + +FD +    +P+  T++I+
Sbjct: 150 LDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLP---VPNVFTFNIV 206

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++   K+  L  AR +F  M   GC+PD+VTY  ++D   K G ++E   +V  M  + C
Sbjct: 207 IDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGC 266

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                 Y+ L++ +    R+E A   F EM++ G++A+V  ++  + AFCK    +   +
Sbjct: 267 AADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMK 326

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +   M  +G+ PN  T   +++G    G  D+A  +   M+ +    +  TYT+M+   C
Sbjct: 327 LFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLC 386

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G++ +A  V   M+      +   ++ LI+G         +  LL  M  KG+     
Sbjct: 387 KEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVS 446

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
            +G L   L K+ + D  K L  KM
Sbjct: 447 LYGTLIWGLCKDQKVDEAKSLLHKM 471



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 3/320 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+++   K  +      L++ M  + ++ NV T+ +++    +  KV EA    ++M+
Sbjct: 343 YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLME 402

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLP 217
           + GV  N   +  L+     + N  +A ++ + MK++ +  D   Y  L+ G  KD  + 
Sbjct: 403 RGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVD 462

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+ +  +M   G  P+ V Y  ++D L KAG+  EA+ ++  +  +  +P    Y  L+
Sbjct: 463 EAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALI 522

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   I +A+  F +M + G+  +V  Y ALI  FCK         ++ +M  KG++
Sbjct: 523 DGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMS 582

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
            +      +++G + +    +A+ +  +MI+   + D   YT  I  FC    +++A  V
Sbjct: 583 LDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGV 642

Query: 397 WKYMKLKRFIPSMHTFSVLI 416
              M      P    ++ LI
Sbjct: 643 LSEMIGTGITPDKTVYNCLI 662



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 2/247 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +  E  V  Y ++I  L K ++      L++ M    +  N   +  IM    +  K 
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE 496

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EAV   + +   G   N+  +  L+  LCK+ ++ +A   F+ M++  + P+ + Y+ L
Sbjct: 497 SEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTAL 556

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+ K  +L +A  +  EM+D G + D V Y  ++D   K   + +A  +   M  +  
Sbjct: 557 IDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL 616

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +   + Y+  +  +   N +++A     EM   GI  D  +YN LI  + K    +    
Sbjct: 617 QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASS 676

Query: 327 VLKDMNS 333
           +  +M S
Sbjct: 677 LQNEMES 683



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 36/176 (20%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+C ++    +   + EA+  FN M++ G+  N+ A+  L+   CK  ++ KA  + 
Sbjct: 514 NVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLM 573

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLP------------------------------- 217
           + M D+ +  D   Y+ L++G+ K  NL                                
Sbjct: 574 NEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNM 633

Query: 218 ----RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                AR +  EM+ TG  PD   Y  ++    K G ++EA  +   M+S +   T
Sbjct: 634 NMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSCT 689



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 91/251 (36%), Gaps = 86/251 (34%)

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +   VDT L +     LAD  + +  + A  +  + +             V PN+RTCN 
Sbjct: 133 LPSVVDTLLSL-----LADHGLLDDAVRALARVRQLR-------------VPPNTRTCNH 174

Query: 346 IL--------NGLIGR-----------------------GETDEAYRVFRRMIKL----- 369
           IL         GL+ R                       GE  EA  +F RM  +     
Sbjct: 175 ILLRLARNRQGGLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPD 234

Query: 370 -------------------------------CEADADTYTMMIKMFCQGGELEKAFKVWK 398
                                          C AD  TY  +I  F + G +EKA+  + 
Sbjct: 235 VVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFG 294

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            MK +  + ++ TFS  ++  C +G+V ++  L   M  +G+ P+  T+  L     K G
Sbjct: 295 EMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 354

Query: 459 R-EDVLKFLQE 468
           R +D +  L E
Sbjct: 355 RLDDAIVLLDE 365


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 3/367 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ +I     + + Q        M R   + NV T+  ++  Y ++ +++EA    
Sbjct: 9   NVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLL 68

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G+  NL ++N +++ LC+  ++++A EI + M  + F PD  TY+ LL G+ K+
Sbjct: 69  KSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKE 128

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N  +A  I  EMV  G +P +VTY  +++ +CKA  ++ A+     M     RP    Y
Sbjct: 129 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 188

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +  +  + +A     EM ++G    V  YNA I   C   + +    V+++M  
Sbjct: 189 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 248

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG+AP+  + + I++G   +GE D A+++ + M+ K    DA TY+ +I+  C+   L +
Sbjct: 249 KGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTE 308

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  + + M      P   T++ LIN  C +G ++ +  L ++MI KG  P   T+  L  
Sbjct: 309 ACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 368

Query: 453 LLIKEGR 459
            L K+ R
Sbjct: 369 GLNKQAR 375



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 149/350 (42%), Gaps = 71/350 (20%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++ R  P+  TY+IL+ G+     L +    F EM   GC P++VTY  ++D  CK GR+
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 61

Query: 252 DEALGIVKSMDS---------------TVCR--------------------PTSFIYSVL 276
           DEA G++KSM S                +CR                    P    Y+ L
Sbjct: 62  DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTL 121

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ Y  E     A+    EM +NG+   V  Y ALI + CKA            M  +G+
Sbjct: 122 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI----------------------------- 367
            PN RT   +++G   +G  +EAYR+   M                              
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 368 -------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
                  K    D  +Y+ +I  FC+ GEL++AF++ + M  K   P   T+S LI GLC
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 301

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +   ++++C L ++M++ G+ P   T+  L      EG  +    L ++M
Sbjct: 302 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 351



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 182/413 (44%), Gaps = 53/413 (12%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y+ +I  L +    +  W+++  M  K     E T+  ++  Y +     +A+     M
Sbjct: 82  SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            + GV+ ++  +  L++++CK++N+ +A E FD M+ R + P+ +TY+ L++G+ +   L
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 201

Query: 217 PRAREIF-----------------------------------REMVDTGCNPDIVTYGIM 241
             A  I                                    +EMV+ G  PD+V+Y  +
Sbjct: 202 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 261

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +   C+ G +D A  + + M      P +  YS L+       R+ +A D   EM   G+
Sbjct: 262 ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 321

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             D   Y  LI A+C          +  +M  KG  P++ T ++++NGL  +  T EA R
Sbjct: 322 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 381

Query: 362 VFRRMIKLCEADAD-TY---------------TMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +  ++I      +D TY                 +IK FC  G + +A +V++ M  +  
Sbjct: 382 LLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNH 441

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            P    ++V+I+G C  G +  +  L ++MI  G  P   T   L K L KEG
Sbjct: 442 KPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 165/359 (45%), Gaps = 18/359 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y ++I S+ K R      +  + MR + +  N  T+  ++  ++R   + EA    
Sbjct: 149 SVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRIL 208

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           N M + G + ++  +N  +   C  + + +A  +   M ++   PD  +YS ++ G+ + 
Sbjct: 209 NEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRK 268

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L RA ++ +EMV+ G +PD VTY  ++  LC+  R+ EA  + + M      P  F Y
Sbjct: 269 GELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTY 328

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y VE  +  A+    EM   G L D   Y+ LI    K  + +   R+L  +  
Sbjct: 329 TTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIY 388

Query: 334 KGVAPNSRT--------CNI-------ILNGLIGRGETDEAYRVFRRMIKLCEADADT-Y 377
           +   P+  T         NI       ++ G   +G   EA RVF  M++      +  Y
Sbjct: 389 EESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVY 448

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
            ++I   C+GG L KAF ++K M    F+P   T   LI  L  +G+  +   ++ D +
Sbjct: 449 NVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 507



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 2/245 (0%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M+ +  +P++ TY I++   C  G + + LG    M+   C P    Y+ L+  Y    R
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           I++A      M   G+  ++  YN +I   C+    K  + +L++M  KG  P+  T N 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 346 ILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +LNG    G   +A  +   M++        TYT +I   C+   L +A + +  M+++ 
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK-LRKLLIKEGREDVL 463
             P+  T++ LI+G   +G+++++  +L +M E G  PS  T+   +    + E  E+ L
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 464 KFLQE 468
             +QE
Sbjct: 241 GVVQE 245


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 186/367 (50%), Gaps = 3/367 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y+ +I         ++       M   R L NV T+  ++  Y ++++++EA    
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLL 261

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G+  NL  +N +++ LC+   + +   +   M  + F PD  TY+ L+ G+ K 
Sbjct: 262 RSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKV 321

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N  +A  +  EM+  G  PD+VTY  +++ +CKAG ++ A+     M     RP    Y
Sbjct: 322 GNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTY 381

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ +  +  +++A   + EM ++G    +  YNAL+   C + + +    +L+ M  
Sbjct: 382 TSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEG 441

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG++P+  + + I+ G     E D A+++   M+ K    DA TY+ +I+  C+   L +
Sbjct: 442 KGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNE 501

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M  K  +P   T++ LING C +G ++++  L ++MI+KG  P   T+  L  
Sbjct: 502 ACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLIN 561

Query: 453 LLIKEGR 459
            L K+ R
Sbjct: 562 GLNKQAR 568



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 200/399 (50%), Gaps = 6/399 (1%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ 114
           SG+ ++      ++  F  AG L     FF+  E+ +   + V  Y+++I +  K+++  
Sbjct: 197 SGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVV-TYNTVIGAYCKLKRID 255

Query: 115 IMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
             + L+ +M  + +  N+ T+ +++    RV ++EE       M + G   +   +N L+
Sbjct: 256 EAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLV 315

Query: 174 SALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           +  CK  N  +A  +  + +++   PD  TY+ L+    K  NL RA E F +M   G  
Sbjct: 316 NGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR 375

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P+ VTY  +++   + G +DEA  I   M  +   PT   Y+ L++ + V  R+E+A+  
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGL 435

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              ME  G+  DV  Y+ +I  FC+  +    +++  +M  KGV+P++ T + ++ GL  
Sbjct: 436 LRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCE 495

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           +   +EA  +F+ M+ K    D  TYT +I  +C+ G+L +A  +   M  K F+P   T
Sbjct: 496 QRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++VLINGL  +    ++  LL  +      P+G T+  L
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTL 594



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 43/349 (12%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           GV+ N+ ++N L+   C + N+      F+ M ++R +P+  TY+ ++  + K   +  A
Sbjct: 198 GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEA 257

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            ++ R M   G  P+++TY ++++ LC+ GR++E  G++  MD     P    Y+ LV+ 
Sbjct: 258 FKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNG 317

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y        A+    EM +NG+  DV  Y +LI   CKA            M+ +G+ PN
Sbjct: 318 YCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPN 377

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-------------------------------- 367
             T   ++NG   +G  DEAYR++  MI                                
Sbjct: 378 GVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLR 437

Query: 368 ----KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
               K    D  +Y+ +I  FC+  EL++AF++   M  K   P   T+S LI GLC++ 
Sbjct: 438 GMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQR 497

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
            ++++C L ++M+ K + P   T+  L     KEG       L E +NL
Sbjct: 498 RLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGD------LNEALNL 540



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 190/398 (47%), Gaps = 59/398 (14%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y +V    +A+   + M + G+  ++  +  L++ +CK+ N+ +A E FD M
Sbjct: 310 TYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQM 369

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R + P+  TY+ L+ G+ +   +  A  I+ EM+ +G  P IVTY  +++  C +GR+
Sbjct: 370 HVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRM 429

Query: 252 DEALGIVKSMD-----------STV----CR--------------------PTSFIYSVL 276
           +EA+G+++ M+           ST+    CR                    P +  YS L
Sbjct: 430 EEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSL 489

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     + R+ +A D F EM    +L D   Y +LI  +CK         +  +M  KG 
Sbjct: 490 IQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGF 549

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI------------KLCEADAD----TYTMM 380
            P++ T N+++NGL  +  T EA R+  ++              L E+ +D    +   +
Sbjct: 550 LPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVAL 609

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           IK FC  G + +A +V++ M  +   P+   ++V+I+G C  G V  +  L ++M++ G 
Sbjct: 610 IKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGF 669

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
            P   T   L K L  EG       + E++NL++++ L
Sbjct: 670 IPHTVTIIALVKALYSEG-------MDEQLNLVIRDIL 700



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 167/370 (45%), Gaps = 19/370 (5%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G+R +      ++  F   G +   +  W E  +  +  ++  Y++++       + +  
Sbjct: 373 GLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEA 432

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
             L+  M  K +  +V ++  I+  + R Q+++ A      M + GV+ +   ++ L+  
Sbjct: 433 IGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492

Query: 176 LCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LC+ + + +A ++F  M ++  +PD  TY+ L+ G+ K+ +L  A  +  EM+  G  PD
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT--------------- 279
            VTY ++++ L K  R  EA  ++  +      P    Y  L+ +               
Sbjct: 553 TVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKG 612

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           + ++  + +A   F  M K     + A+YN +I   C+       +++ K+M   G  P+
Sbjct: 613 FCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPH 672

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWK 398
           + T   ++  L   G  ++   V R +++ C+ +DA+    ++++  + G ++  F +  
Sbjct: 673 TVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLT 732

Query: 399 YMKLKRFIPS 408
            M    F+PS
Sbjct: 733 EMAKDGFLPS 742



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 100/191 (52%), Gaps = 8/191 (4%)

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK---- 320
           +C  +S ++ ++V +    N IE A++     + NG +  V  YNA++ +  +  K    
Sbjct: 127 MCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIF 186

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTM 379
            + VYR   +M + GV+ N  + NI++ G    G  +   R F  M +  C  +  TY  
Sbjct: 187 AEKVYR---EMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNT 243

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I  +C+   +++AFK+ + M L+   P++ T++++INGLC  G + ++  +L +M  KG
Sbjct: 244 VIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKG 303

Query: 440 IRPSGETFGKL 450
             P G T+  L
Sbjct: 304 FAPDGVTYNTL 314


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 188/378 (49%), Gaps = 7/378 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           + +  +V  ++ +I    K +     + L+  M  K  + NV TF I++    +  +V E
Sbjct: 226 KGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 285

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLE 208
           A      M   G + N+  ++ +++ LCK   V  A E+F  M+ R  P +  T++IL++
Sbjct: 286 AQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILID 345

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCR 267
           G  K   +  AR+++  M +TGC PDI+TY  ++D LCK+ +VDEA  + +++ +S V  
Sbjct: 346 GLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA 405

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
             +  YS L H Y    R+ DA   F  +   G   D+A Y +LI  +CK ++   V  +
Sbjct: 406 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 465

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
           +++M SKG  P   T + +L GL     T+ A ++F  M  + C  DA  Y ++++   +
Sbjct: 466 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 525

Query: 387 GGELEKAFKVWKYMKLKR---FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             + +KA  V + +  KR   F PS      L+  LC  G   D+  LL  M E+G   +
Sbjct: 526 ASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAA 585

Query: 444 GETFGKLRKLLIKEGRED 461
             ++ +L   L +  R D
Sbjct: 586 VSSYNRLLSGLSRLQRWD 603



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 181/386 (46%), Gaps = 5/386 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCII 137
           L   FF WA  +    H+V + +  ++ L ++ + Q    L  NAM    M N  T+ I+
Sbjct: 6   LVLLFFDWARSRVG--HNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGIL 63

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +R ++    ++ A+     M+  G   N      L+  LC +  V +A E F  M     
Sbjct: 64  IRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCA 123

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY+ L+    K      A+ + REMV  GC PD VT+  ++D LCK G  ++A  +
Sbjct: 124 PDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRV 183

Query: 258 VKS-MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  +   +    +   +++       N +E A      +   G    V M+N +I  FC
Sbjct: 184 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFC 243

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           KA    + Y++L+ M  KG  PN  T  I++ GL       EA ++  +M+   C  +  
Sbjct: 244 KAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVV 303

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+ +I   C+ G+++ A+++++ M+ +   P++ T ++LI+GLC    + ++  L   M
Sbjct: 304 TYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRM 363

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
            E G  P   T+  L   L K  + D
Sbjct: 364 RETGCAPDIITYNSLIDGLCKSFQVD 389



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 187/399 (46%), Gaps = 5/399 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           +  SG   +  +   +++   +AG +      +    ++    V  Y +++ +L K  ++
Sbjct: 83  MKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKF 142

Query: 114 QIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
                ++  M  +    +  TF  ++    +    E+A      + + G+  + AAF  +
Sbjct: 143 DEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETI 202

Query: 173 LSALCKSKN-VRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           +  LC   N V  A ++   +  + F P    +++++ G+ K  +L  A ++   M++ G
Sbjct: 203 IQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG 262

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C P++ T+ I++  LCKA RV EA  +++ M    C P    YS +++    + +++DA 
Sbjct: 263 CVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAY 322

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           + F  ME+     +V  +N LI   CKA + +   ++   M   G AP+  T N +++GL
Sbjct: 323 ELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 382

Query: 351 IGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               + DEA+++F+ + +  +  A+A TY+ +   +   G +  A +++  +  K F P 
Sbjct: 383 CKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 442

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + T++ LI   C      +   L+E+M  KG  P   T 
Sbjct: 443 LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 481



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 180/389 (46%), Gaps = 7/389 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I  L K  Q    ++L   M  +    NV T  I++    + +++EEA   +
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 360

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGK 212
           + M++ G   ++  +N L+  LCKS  V +A ++F  + +  +   ++ TYS L  G+  
Sbjct: 361 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 420

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +  A  IF  +VD G +PD+ TY  ++   CK  R  E + +V+ M S    P    
Sbjct: 421 LGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT 480

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK--- 329
            S ++      N  E A+  F  M   G   D  +YN ++    +A+K      VL+   
Sbjct: 481 LSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVI 540

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-DTYTMMIKMFCQGG 388
           D   +   P+S   + ++  L   G+TD+A ++  +M +   A A  +Y  ++    +  
Sbjct: 541 DKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQ 600

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
             ++A +V++ M      P + T +V+I+ LC    V D+  L++ M + G  P  ET  
Sbjct: 601 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCN 660

Query: 449 KLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            L     K GR D+ + L E+M     EP
Sbjct: 661 TLIGGYCKSGRADLARKLLEEMTEAGLEP 689



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 135/254 (53%), Gaps = 3/254 (1%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  +FR  +   C P+  TYGI++     AG +D A+ +++ M S+     + +++ L+ 
Sbjct: 41  ALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMK 100

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 R+ +A++ F  M K+    DV  Y AL+ A CKA KF     +L++M ++G AP
Sbjct: 101 GLCDAGRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAP 159

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKV 396
           ++ T + +++GL   G  ++A+RV   +I+  +  +DA   T++ ++  +   +E A KV
Sbjct: 160 DTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKV 219

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              +  K F P++  F+++ING C    +  +  LLE MIEKG  P+  TF  L   L K
Sbjct: 220 LGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK 279

Query: 457 EGREDVLKFLQEKM 470
             R    + L EKM
Sbjct: 280 ANRVGEAQQLLEKM 293



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 161/352 (45%), Gaps = 16/352 (4%)

Query: 80  AFCFFKWAEKQQNYEHSVR---------AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-- 128
             C  K  E+ +   H +R          Y+S+I+ L K  Q    + L   +    +  
Sbjct: 346 GLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA 405

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            N  T+  +   YA + ++ +A   F+++   G + +LA +  L+   CK+    +  E+
Sbjct: 406 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 465

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            + M  + F P   T S +L G  +  +  RA ++F  M   GC  D + Y ++V+ + +
Sbjct: 466 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 525

Query: 248 AGRVDEALGIVKSMDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           A + D+AL +++ +     R   P+S     LV +     + +DA     +M + G  A 
Sbjct: 526 ASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAA 585

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V+ YN L+    +  ++    +V + M S G AP   T N++++ L    + D+AY + +
Sbjct: 586 VSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQ 645

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           RM KL C  D +T   +I  +C+ G  + A K+ + M      P+  T  +L
Sbjct: 646 RMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK++++ ++  L   M+  R+  ++ ++ I++  + R  ++  A+   
Sbjct: 79  SIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL 138

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C SK +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLH 198

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +  +MV  GC PD+VTYG +V+ LCK G +D AL ++K M+         IY
Sbjct: 199 NKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        I+DA   F +ME  GI  DV  YN+LI   C   ++ +  R+L +M  
Sbjct: 259 NTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIE 318

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  +  G+  EA +++  MIK   + D  TY+ +I  FC    L++
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M  K   P++ T++ LI G C    V +   L  +M ++G+  +  T+  L +
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G  D+ + + +KM
Sbjct: 439 GLFQAGDCDMAQKIFKKM 456



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 187/372 (50%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  +  +  Y +++  L K     +   L+  M   ++  +V  +  I+    + + ++
Sbjct: 213 QRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHID 272

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A   FN M+  G+  ++  +N L+S LC       A  +   M +R I P+  T+S L+
Sbjct: 273 DAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALI 332

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A +++ EM+    +PDI TY  +++  C   R+DEA  + + M S  C 
Sbjct: 333 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 392

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+  +    R+E+ ++ F EM + G++ +   YN LI    +A       ++
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S GV P+  T +I+L+GL   G+ ++A  VF  + K   E D  TY +MI+  C+
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G++E  + ++  + LK   P++  ++ +I+G C KG+  ++  L  +M E G  P    
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGC 572

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 573 YNTLIRARLRDG 584



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 139/268 (51%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    +++EA + F +M       N+  +N L+   CK+K V +  E+F
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+ L++G  +  +   A++IF++MV  G  PDI+TY I++D LCK 
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++AL + + +  +   P  + Y++++       ++ED  D F  +   G+  +V +Y
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             +I  FC+    +    + ++M   G  P+S   N ++   +  G+   +  + + M +
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM-R 597

Query: 369 LCE--ADADTYTMMIKMFCQGGELEKAF 394
            C    DA T +M+I M    G LEK++
Sbjct: 598 SCGFVGDASTISMVINML-HDGRLEKSY 624



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 1/269 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++ R +P    ++ LL    K         +   M +   + D+ +Y I+++  C+  ++
Sbjct: 72  VQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQL 131

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL ++  M      P     S L++ Y    RI DAV    +M + G   D   +N L
Sbjct: 132 PLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTL 191

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I      NK      ++  M  +G  P+  T   ++NGL  RG+ D A  + ++M K   
Sbjct: 192 IHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKI 251

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           EAD   Y  +I   C+   ++ AF ++  M+ K   P + T++ LI+ LC+ G  SD+  
Sbjct: 252 EADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASR 311

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL +MIE+ I P+  TF  L    +KEG+
Sbjct: 312 LLSNMIERKINPNVVTFSALIDAFVKEGK 340



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 117/245 (47%), Gaps = 1/245 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +F EMV +   P IV +  ++  + K  + D  + + + M +       + Y++
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++ +   +++  A+    +M K G   D+   ++L+  +C + +  +   ++  M   G
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             P++ T N +++GL    +  EA  +  +M++  C+ D  TY  ++   C+ G+++ A 
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            + K M+  +    +  ++ +I+GLC    + D+  L   M  KGIRP   T+  L   L
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCL 300

Query: 455 IKEGR 459
              GR
Sbjct: 301 CNYGR 305


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 184/373 (49%), Gaps = 4/373 (1%)

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRK 140
           CF     ++Q      +   +MI  L ++ Q ++  ++      +   N V  F  ++  
Sbjct: 170 CFEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISA 229

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCM-KDRFIP 198
           Y R    +EA+  F  M+  G+  NL  +N ++ A  K   +  +A EIFD M ++   P
Sbjct: 230 YGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQP 289

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  T++ LL   G+      AR +F EM+  G   DI TY  ++D +CK G++D A  I+
Sbjct: 290 DRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIM 349

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M      P    YS ++  Y    R+++A++ F EM+   I  D   YN L+  + K 
Sbjct: 350 SEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKL 409

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTY 377
            +F+    V K+M S G+  ++ T N +L G   +G+ +E  RVF  M  +    +  TY
Sbjct: 410 GRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTY 469

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           + +I ++ +GG  ++A +V++  K       +  +S LI+ LC  G+V  +   L++M +
Sbjct: 470 STLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTK 529

Query: 438 KGIRPSGETFGKL 450
           +GIRP+  T+  +
Sbjct: 530 EGIRPNVVTYNSI 542



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 13/347 (3%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVY 152
           E  +  Y+++++++ K  Q  + + +++ M  K  M NV T+  ++  YA+  +++EA+ 
Sbjct: 323 EQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALN 382

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWG 211
            FN M+   +  +  ++N LLS   K     +A  +   M+   I  D+ TY+ LL G+G
Sbjct: 383 LFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYG 442

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K       + +F EM      P+++TY  ++DV  K G   EA+ + +       +    
Sbjct: 443 KQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVV 502

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           +YS L+        +E AV    EM K GI  +V  YN++I AF ++   + V     + 
Sbjct: 503 LYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYET 562

Query: 332 N-SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIKMFCQGG 388
           N SK  + + +         +G  E ++  ++F ++   K C A  +      ++ C   
Sbjct: 563 NVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQ-EILC--- 618

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                  V+  M      P++ TFS ++N         D+ +LLE++
Sbjct: 619 ----ILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEEL 661



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M+ +L + G+V+ A  + ++  +     T + +S L+  YG     ++A+  F  M+ +G
Sbjct: 191 MISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSG 250

Query: 301 ILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           +  ++  YNA+I A  K    F     +  +M   GV P+  T N +L  + GRG   EA
Sbjct: 251 LKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLL-AVCGRGGLWEA 309

Query: 360 YR-VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            R +F  M+ +  E D  TY  ++   C+GG+++ AF++   M  K  +P++ T+S +I+
Sbjct: 310 ARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVID 369

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           G    G + ++  L  +M    I     ++  L  +  K GR E+ L   +E
Sbjct: 370 GYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKE 421



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 151/366 (41%), Gaps = 47/366 (12%)

Query: 127 RMLNVETFCIIMRKYARVQKVEEAV--YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           R+   + +  ++R+     +  +A+  + F V ++    +     + ++S L +   V  
Sbjct: 144 RLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRLGQVEL 203

Query: 185 AQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A+ +F+  + + +      +S L+  +G+      A ++F  M  +G  P++VTY  ++D
Sbjct: 204 AKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVID 263

Query: 244 VLCKAGRVD--EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
             C  G VD   A  I   M     +P    ++ L+   G     E A + F EM   GI
Sbjct: 264 A-CGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGI 322

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             D+  YN L+ A CK  +    ++++ +M  K + P     N++               
Sbjct: 323 EQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMP-----NVV--------------- 362

Query: 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                         TY+ +I  + + G L++A  ++  MK         +++ L++    
Sbjct: 363 --------------TYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAK 408

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM-------NLLV 474
            G   ++  + ++M   GI+    T+  L     K+G+ + +K + E+M       NLL 
Sbjct: 409 LGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLT 468

Query: 475 KEPLCD 480
              L D
Sbjct: 469 YSTLID 474


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 229/519 (44%), Gaps = 72/519 (13%)

Query: 22  YNSSEPSTEALDAA---KSISKIMLSSPKVVL--DTALDQSGIRVSPEIVEDVLEKFRNA 76
           Y+++  S + LD     K I + + + PK+V+  D+AL       +P  V  +L   R  
Sbjct: 90  YSNANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSAL-------APIWVSKILLGLRED 142

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ---------IM----------- 116
             LA  FFKWA  Q  + H+  +Y  ++  + + R Y          IM           
Sbjct: 143 PKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVC 202

Query: 117 --WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-------------- 160
             +D++ + R   +     F ++   +  +  +EEA   F+ M+ +              
Sbjct: 203 NIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLH 262

Query: 161 ---------------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
                                G+  ++  +N ++  LCK  ++  ++ +F  M++  + P
Sbjct: 263 RLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSP 322

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  TY+ L++G+GK  +L     +F EM D GC PDI+TY  +++  CK  ++  A    
Sbjct: 323 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 382

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M +   +P    YS L+  +  E  ++ A+  F++M + G+L +   Y +LI A CKA
Sbjct: 383 SEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKA 442

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTY 377
                 +++L DM   GV  N  T   +L+GL   G   EA  VFR M+K     +   Y
Sbjct: 443 GNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVY 502

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T ++  + +   +E A K+ K M      P +  +  +I G C +  + ++ ++LE+M  
Sbjct: 503 TALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKS 562

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVK 475
           +GI  +      +     K G+  D L F QE  ++ V+
Sbjct: 563 RGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVE 601



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 186/427 (43%), Gaps = 73/427 (17%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           ++      V  Y+S+I+   K+   + +  L N M+    + ++ T+  ++  Y + +K+
Sbjct: 316 REMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKM 375

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSIL 206
             A   F+ M+  G+  N+  ++ L+ A CK   ++ A ++F D  +   +P+  TY+ L
Sbjct: 376 PRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSL 435

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++   K  NL  A ++  +M+  G   +IVTY  ++D LCKAGR+ EA  + +SM     
Sbjct: 436 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 495

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   +Y+ LVH Y    R+EDA+    +M +  I  D+ +Y ++I   C   K +    
Sbjct: 496 SPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 555

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LC 370
           +L++M S+G++ N      I++     G++ +A   F+ M                  LC
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615

Query: 371 EA--------------------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           +A                    +   YT +I   C+   +E A K++  M+ +   P + 
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDIT 675

Query: 411 TFSVLINGLCDKGIVSDSCVLLE-----------------------------------DM 435
            F+ LI+G    G + ++ VL+                                    +M
Sbjct: 676 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 735

Query: 436 IEKGIRP 442
           IEKGI P
Sbjct: 736 IEKGILP 742



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 199/442 (45%), Gaps = 22/442 (4%)

Query: 45  SPKVV-LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           SP VV  ++ +D  G   S E V  +  + ++ G +                 +  Y+ +
Sbjct: 321 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP---------------DIITYNGL 365

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           I    K  +    ++  + M+   +  NV T+  ++  + +   ++ A+  F  M++ G+
Sbjct: 366 INCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGL 425

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRARE 221
             N   +  L+ A CK+ N+ +A ++ + M    +  +  TY+ LL+G  K   +  A E
Sbjct: 426 LPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEE 485

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +FR M+  G +P+   Y  +V    KA R+++A+ I+K M     +P   +Y  ++  + 
Sbjct: 486 VFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHC 545

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            + ++E+      EM+  GI A+  +   +I A+ KA K  +     ++M   GV     
Sbjct: 546 SQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIV 605

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T  ++++GL   G  + A   F RM+ L  + +   YT +I   C+   +E A K++  M
Sbjct: 606 TYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEM 665

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR- 459
           + +   P +  F+ LI+G    G + ++ VL+  M E  I      +  L     + G  
Sbjct: 666 QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGEL 725

Query: 460 EDVLKFLQEKM--NLLVKEPLC 479
               KF  E +   +L +E LC
Sbjct: 726 HQARKFFNEMIEKGILPEEVLC 747



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 1/224 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+  +   +K+EE       M+  G++ N      ++ A  K+     A   F  M+D  
Sbjct: 540 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 599

Query: 197 IPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           +  +  TY +L++G  K   +  A + F  M+  G  P++  Y  ++D LCK   ++ A 
Sbjct: 600 VEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAK 659

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M      P    ++ L+        +++A+     M +  I  D+ +Y +L+  F
Sbjct: 660 KLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGF 719

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
            +  +     +   +M  KG+ P    C  +L     RG+ DEA
Sbjct: 720 SQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEA 763



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 1/207 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+  Y +  K  +A+  F  MQ  GV   +  +  L+  LCK+  V  A + F  M    
Sbjct: 575 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLG 634

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P+   Y+ L++G  K+  +  A+++F EM   G  PDI  +  ++D   K G + EAL
Sbjct: 635 LQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEAL 694

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M          +Y+ LV  +     +  A   F EM + GIL +  +   L+  +
Sbjct: 695 VLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREY 754

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRT 342
            K  +      +  +M   G+   S T
Sbjct: 755 YKRGQLDEAIELKNEMERMGLITESAT 781


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 194/375 (51%), Gaps = 4/375 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y ++I +L+     ++   ++  M  +    N+ TF  +++ +       EA+  +
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFW 339

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
           + M + GV  N+ A+N L+  LC  +++  A  +F+ M+ +   P+ +TYS L++G+ K 
Sbjct: 340 DRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKA 399

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A E++  M+  GC+P++V Y  MVDVLC+    ++A  ++++M    C P +  +
Sbjct: 400 GDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTF 459

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +       R++ A+  F +M  +G   +   YN L+ +  K  +F   + ++KDM  
Sbjct: 460 NTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEH 519

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           +G+  N  T N I+ G    G   EA  +  +M ++  + DA T  ++I  +C+ G++  
Sbjct: 520 RGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNI 579

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-R 451
           A ++   +   ++ P +  ++ LI+G+C    V ++ V L  M+ +GI P+  T+  L R
Sbjct: 580 AIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVR 639

Query: 452 KLLIKEGREDVLKFL 466
            L    G    ++FL
Sbjct: 640 HLFSNMGHSGAVQFL 654



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 198/405 (48%), Gaps = 7/405 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIM 116
           GI  S ++   V+  +R AG+       +   Q    + +V+ Y+ ++++L    ++Q++
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
             + + M+   M  NV T+ I+++   +  +V+ A      M   G   +  ++  L+S+
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISS 225

Query: 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           LCK   V++A+E    +   F P    Y+ L+ G  K+     A ++  EM++ G +P++
Sbjct: 226 LCKLGKVKEARE----LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNV 281

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           ++Y  +++ L  AG V+ +L ++  M +  C P    ++ L+  + ++    +A+D +  
Sbjct: 282 ISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDR 341

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M + G++ +V  YNAL+   C      +   V   M   G  PN RT + +++G    G+
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            D A  V+  MI   C  +   YT M+ + C+     +A+ + + M+++   P+  TF+ 
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            I GLC  G V  +  + + M   G  P+  T+ +L   L+K+ R
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRR 506



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 196/434 (45%), Gaps = 45/434 (10%)

Query: 68  DVLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           DVL++ ++    TLA  +FK     ++++H+   Y  MIE LA  R+   +  L+  M+ 
Sbjct: 45  DVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKL 104

Query: 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           + +  + + F  ++  Y R    E+A+ TF  MQ + V   +  +N +L AL      + 
Sbjct: 105 EGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQM 164

Query: 185 AQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
              I+  M KD   P+  TY+ILL+   K+  +  A ++  EM   GC+PD V+Y  ++ 
Sbjct: 165 INPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLIS 224

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LCK G+V EA  +  S       P+  +Y+ L++    E   E+A     EM   GI  
Sbjct: 225 SLCKLGKVKEARELAMSF-----TPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDP 279

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +V  Y  +I A   A   +    VL  M ++G +PN  T   ++ G   +G + EA   +
Sbjct: 280 NVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFW 339

Query: 364 RRMIK----------------LCE--------------------ADADTYTMMIKMFCQG 387
            RMI+                LC                      +  TY+ +I  + + 
Sbjct: 340 DRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKA 399

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+L+ A +VW +M      P++  ++ +++ LC   + + +  L+E+M  +   P+  TF
Sbjct: 400 GDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTF 459

Query: 448 GKLRKLLIKEGRED 461
               K L   GR D
Sbjct: 460 NTFIKGLCGSGRVD 473


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 189/372 (50%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  + ++  Y  ++  L K     +  +L+N M   ++  +V  F  I+    + + V+
Sbjct: 218 QRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVD 277

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           +A+  F  M+  G+  N+  ++ L+S LC       A ++  D ++ +  P+  T++ L+
Sbjct: 278 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+     A +++ +M+    +PDI TY  +V+  C   R+D+A  + + M S  C 
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF 397

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+  +    R+ED  + F EM   G++ D   Y  LI          N  +V
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S GV P+  T +I+L+GL   G+ ++A  VF  M K   + D   YT MI+  C+
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++  + ++  + LK   P++ T++ +I+GLC K ++ ++  LL+ M E G  P+  T
Sbjct: 518 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGT 577

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 578 YNTLIRAHLRDG 589



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 187/369 (50%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK++++ ++  L   M R + +  + T+ I++  + R  ++  A+   
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC P++VTYG++V+ LCK G  D AL ++  M++        I+
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ +      ++DA++ F EME  GI  +V  Y++LI   C   ++ +  ++L DM  
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           K + PN  T N +++  +  G+  EA +++  MIK   + D  TY  ++  FC    L+K
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++++M  K   P + T++ LI G C    V D   L  +M  +G+     T+  L +
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443

Query: 453 LLIKEGRED 461
            L  +G  D
Sbjct: 444 GLFHDGDCD 452



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 175/358 (48%), Gaps = 7/358 (1%)

Query: 68  DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           D L K+R+    A   FK  E  +    +V  Y S+I  L    ++     L++ M  K+
Sbjct: 268 DSLCKYRHVDD-ALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 128 M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +  N+ TF  ++  + +  K  EA   ++ M K  +  ++  +N L++  C    + KA+
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385

Query: 187 EIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           ++F+ M  KD F PD  TY+ L++G+ K   +    E+FREM   G   D VTY  ++  
Sbjct: 386 QMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L   G  D A  + K M S    P    YS+L+       ++E A++ F  M+K+ I  D
Sbjct: 445 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           + +Y  +I   CKA K  + + +   ++ KGV PN  T N +++GL  +    EAY + +
Sbjct: 505 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 564

Query: 365 RMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +M +     ++ TY  +I+   + G+   + ++ + M+  RF+    T  ++ N L D
Sbjct: 565 KMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHD 622



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 8/301 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNV 156
            ++++I++  K  ++     L + M  KR ++ + F    ++  +    ++++A   F  
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDM-IKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 390

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M       ++  +N L+   CKSK V    E+F  M  R  + D+ TY+ L++G   D +
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++F++MV  G  PDI+TY I++D LC  G++++AL +   M  +  +   +IY+ 
Sbjct: 451 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++       +++D  D F  +   G+  +V  YN +I   C     +  Y +LK M   G
Sbjct: 511 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 570

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKA 393
             PNS T N ++   +  G+   +  + R M + C    DA T  ++  M    G L+K+
Sbjct: 571 PLPNSGTYNTLIRAHLRDGDKAASAELIREM-RSCRFVGDASTIGLVANML-HDGRLDKS 628

Query: 394 F 394
           F
Sbjct: 629 F 629



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 143/324 (44%), Gaps = 35/324 (10%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+R      K+++A+  F  M K     ++  FN LLSA+ K K        FD +    
Sbjct: 56  ILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKK-------FDVV---- 104

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                              +    ++ R  +  G    + TY I+++  C+  ++  AL 
Sbjct: 105 -------------------ISLGEKMQRLEIVHG----LYTYNILINCFCRRSQISLALA 141

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M      P+    S L++ Y    RI DAV    +M + G   D   +  LI    
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
             NK      ++  M  +G  PN  T  +++NGL  RG+TD A  +  +M     EAD  
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVV 261

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            +  +I   C+   ++ A  ++K M+ K   P++ T+S LI+ LC  G  SD+  LL DM
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR 459
           IEK I P+  TF  L    +KEG+
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGK 345



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++DA+  F  M K+  L  +  +N L+ A  K  KF  V  + + M    +     T N
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I++N    R +   A  +  +M+KL  E    T + ++  +C G  +  A  +   M   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ LI+GL      S++  L++ M+++G +P+  T+G +   L K G  D+ 
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 464 KFLQEKM 470
             L  KM
Sbjct: 245 LNLLNKM 251


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 187/386 (48%), Gaps = 6/386 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF         +     Y +MI+ LAK   + +   L++ MR + + ++ +    I+
Sbjct: 122 ALTFFHHVVPSLPADSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAII 181

Query: 139 RKYARVQKVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           R+Y R     EA   F  M++YG    + A    LL AL K +   +AQ +FD  K  F 
Sbjct: 182 RRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVFP 241

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD   Y+ L+  W +   L +A ++F EM   G  P++ TY  ++D + +AG+V  A  +
Sbjct: 242 PDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQEL 301

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M  T C P +  ++ ++  +    R E  +    +M + G   D+  YN L+   C 
Sbjct: 302 LCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCG 361

Query: 318 ANK--FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
             +       +VL  M +KG  P+  T N +L  ++G G  + A R++ RM +L C+ + 
Sbjct: 362 KGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNV 421

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++K+F +   ++   ++ K M  +   P+++T+  LI   C +G    +   L +
Sbjct: 422 VTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLRE 481

Query: 435 MI-EKGIRPSGETFGKLRKLLIKEGR 459
           M+ EK ++P+   +  +  LL K G+
Sbjct: 482 MVEEKSLKPTKPVYDMVLMLLRKAGQ 507



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 6/316 (1%)

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFRE 225
           A +  ++  L K  +   A+ + D M++R IP  S+    ++  + +    P A E+FR 
Sbjct: 140 ALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRR 199

Query: 226 MVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           M + G   PD      ++  L K     EA  +  S  S V  P   +Y+ LVH +    
Sbjct: 200 MEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKS-VFPPDVVLYTTLVHAWCRAG 258

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            ++ A   F EM++ GI+ +V  Y ++I A  +A +      +L  M   G  PN+ T N
Sbjct: 259 CLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFN 318

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE--LEKAFKVWKYMK 401
            I+   +  G +++  +V  +M +L C+ D  TY  +++  C  G+  L+ A KV   M 
Sbjct: 319 AIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMI 378

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            K  IP  HTF+ ++  +   G V  +  L E M E   +P+  T+  L KL  KE   D
Sbjct: 379 AKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMD 438

Query: 462 VLKFLQEKMNLLVKEP 477
           ++  +++ M+    EP
Sbjct: 439 MVLRIKKDMDAQGVEP 454


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 185/385 (48%), Gaps = 7/385 (1%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N   SV  +   + S AK +QY  +  L N M   R+  NV +  I++    R+  V+ +
Sbjct: 88  NPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFS 147

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           V     M K G+  +   FN L++ LC    +++A E+F+ M  R   P+  +Y+ ++ G
Sbjct: 148 VSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVING 207

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K  N   A ++F++M   GC P++VTY  ++D LCK   V++A+  +  M      P 
Sbjct: 208 LCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPN 267

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            F Y+ +VH +    ++ +A   F EM    ++ +   +  L+   CK         V +
Sbjct: 268 VFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFE 327

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
            M  KGV P+  T N +++G   +   +EA +VF  MI K C   A +Y ++I  +C+  
Sbjct: 328 TMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSR 387

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +++A  +   M  K   P   T+S L+ GLC  G   ++  L ++M   G  P+  T+ 
Sbjct: 388 RMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYV 447

Query: 449 KLRKLLIKEGRED----VLKFLQEK 469
            L     K G  D    +LK ++EK
Sbjct: 448 ILLDGFCKHGHLDEALKLLKSMKEK 472



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 177/366 (48%), Gaps = 3/366 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I  L    + +   +L N M +     NV ++  ++    +      AV  F  M
Sbjct: 165 TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNL 216
           ++ G   N+  ++ ++ +LCK + V  A E    M +R IP +  TY+ ++ G+     L
Sbjct: 225 EQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQL 284

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +F+EMV     P+ VT+ I+VD LCK G V EA  + ++M      P    Y+ L
Sbjct: 285 NEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNAL 344

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y ++  + +A   F  M + G       YN LI  +CK+ +      +L +M  K +
Sbjct: 345 MDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKAL 404

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFK 395
            P++ T + ++ GL   G   EA  +F+ M       +  TY +++  FC+ G L++A K
Sbjct: 405 NPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + K MK K+  P++  +++LI G+   G +  +  L   +   G RP   T+  + K L+
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLL 524

Query: 456 KEGRED 461
           KEG  D
Sbjct: 525 KEGLSD 530



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 186/379 (49%), Gaps = 4/379 (1%)

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCI 136
           ++A   FK  E Q   + +V  Y ++I+SL K R      + ++ M  + +  NV T+  
Sbjct: 215 SMAVDVFKKME-QNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNS 273

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+  +  + ++ EA   F  M    V  N   F  L+  LCK   V +A+ +F+ M ++ 
Sbjct: 274 IVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKG 333

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + PD  TY+ L++G+     +  A+++F  M+  GC P   +Y I+++  CK+ R+DEA 
Sbjct: 334 VEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAK 393

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M      P +  YS L+       R ++A++ F EM   G   ++  Y  L+  F
Sbjct: 394 SLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGF 453

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK        ++LK M  K + PN     I++ G+   G+ + A  +F ++       D 
Sbjct: 454 CKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDI 513

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TYT+MIK   + G  ++A+ +++ M+   F+P+  +++V+I G       S +  L+++
Sbjct: 514 RTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDE 573

Query: 435 MIEKGIRPSGETFGKLRKL 453
           M+ K    +  TF  L  L
Sbjct: 574 MVGKRFSVNLSTFQMLLDL 592



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 174/357 (48%), Gaps = 3/357 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++ +E +V +Y ++I  L K     +  D+   M       NV T+  I+    + + V 
Sbjct: 191 KRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVN 250

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           +A+   + M + G+  N+  +N ++   C    + +A  +F  M  R  +P++ T++IL+
Sbjct: 251 DAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILV 310

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K+  +  AR +F  M + G  PDI TY  ++D  C    ++EA  + + M    C 
Sbjct: 311 DGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCA 370

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  Y++L++ Y    R+++A     EM    +  D   Y+ L+   C+  + K    +
Sbjct: 371 PGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNL 430

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            K+M S G  PN  T  I+L+G    G  DEA ++ + M  K  E +   YT++I+    
Sbjct: 431 FKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFI 490

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            G+LE A +++  +      P + T++V+I GL  +G+  ++  L   M + G  P+
Sbjct: 491 AGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPN 547



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 130/259 (50%), Gaps = 2/259 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  +M  Y   + + EA   F +M + G      ++N L++  CKS+ + +A+ + 
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLL 396

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  + + PD+ TYS L++G  +      A  +F+EM   G +P++VTY I++D  CK 
Sbjct: 397 AEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +DEAL ++KSM      P    Y++L+    +  ++E A + F ++  +G   D+  Y
Sbjct: 457 GHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTY 516

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
             +I    K       Y + + M   G  PNS + N+++ G +   ++  A R+   M+ 
Sbjct: 517 TVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVG 576

Query: 368 KLCEADADTYTMMIKMFCQ 386
           K    +  T+ M++ +  Q
Sbjct: 577 KRFSVNLSTFQMLLDLESQ 595



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 132/316 (41%), Gaps = 63/316 (19%)

Query: 196 FIPDSKTY------SILLEGWGKDPNLPR-----------------AREIFREMVDTGCN 232
           F+PD   +        L     K P+LP+                 A   F  MV     
Sbjct: 31  FLPDFPCFLFFNHHHFLTSTSTKKPSLPKNNDGFVSNNSNNVCVDDALASFYRMVRINPR 90

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS--VLVHTYGVENRIEDAV 290
           P +V +G  +    K  +    + +   MD  + R T  +YS  +L++     N ++ +V
Sbjct: 91  PSVVEFGKFLGSFAKKKQYSTVVSLCNQMD--LFRVTHNVYSLNILINCLCRLNHVDFSV 148

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               +M K GI  D   +NALI   C   K K    +  +M  +G  PN  +   ++NGL
Sbjct: 149 SVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208

Query: 351 IGRGETDEAYRVFRRMIK----------------LCE--------------------ADA 374
              G T  A  VF++M +                LC+                     + 
Sbjct: 209 CKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNV 268

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  ++  FC  G+L +A +++K M  +  +P+  TF++L++GLC +G+VS++ ++ E 
Sbjct: 269 FTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFET 328

Query: 435 MIEKGIRPSGETFGKL 450
           M EKG+ P   T+  L
Sbjct: 329 MTEKGVEPDISTYNAL 344


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 166/334 (49%), Gaps = 2/334 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           LV+ MR   + +V T+  ++R   +    +EA++    M   G   +   +N ++   CK
Sbjct: 243 LVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 302

Query: 179 SKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
              V++A E+  D +   F+PD  TY  L+ G   + ++ RA E+F E    G  PDIV 
Sbjct: 303 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVV 362

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  +V  LC  G +  AL ++  M    C P    Y+++++       I DA     +  
Sbjct: 363 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 422

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G L DV  +N LI  +CK  K  +  ++++ M   G+AP++ T N +LNGL   G+ +
Sbjct: 423 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 482

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E    F+ MI K C  +  TY ++I+ FC+  ++E+A KV   M  +   P   +F+ LI
Sbjct: 483 EVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI 542

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            G C  G +  + +L + + EKG   + +TF  L
Sbjct: 543 YGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTL 576



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 179/354 (50%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I+   KI   Q   +L+ +A+    + +  T+C ++        VE A+  FN  Q
Sbjct: 293 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 352

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G+  ++  +N L+  LC    +  A ++ + M +    PD +TY+I++ G  K  N+ 
Sbjct: 353 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 412

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  + +  G  PD+ T+  ++D  CK  ++D AL +V+ M      P +  Y+ ++
Sbjct: 413 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 472

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +      ++ +  +TF EM   G   +   YN LI  FC++NK +   +V+  M+ +G+ 
Sbjct: 473 NGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 532

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P++ + N ++ G    G+ + AY +F+++  K   A ADT+  +I  F     +  A K+
Sbjct: 533 PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKI 592

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +  M  K      +T+ VLI+G C    V  + + L +MI+KG  PS  TFG++
Sbjct: 593 FDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 646



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 183/415 (44%), Gaps = 24/415 (5%)

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
           P I   +L    + G +A+C          + H  R                 ++D    
Sbjct: 136 PHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ----------------LFD--QM 177

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           + T    N+  F  ++    +   V EA      + + G++ NL  +N  +  LC++  +
Sbjct: 178 LHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRL 237

Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
            +A  + D M+   +PD  TY+ L+ G  K      A    R M++ GC PD  TY  ++
Sbjct: 238 PEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 297

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D  CK   V EA  ++K        P    Y  L++    E  +E A++ F E +  GI 
Sbjct: 298 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIK 357

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+ +YN+L+   C      +  +V+ +M  +G  P+ +T NI++NGL   G   +A  V
Sbjct: 358 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 417

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               I K    D  T+  +I  +C+  +L+ A ++ + M      P   T++ ++NGLC 
Sbjct: 418 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 477

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL-----RKLLIKEGREDVLKFLQEKMN 471
            G V++     ++MI KG  P+  T+  L     R   ++E  + ++K  QE ++
Sbjct: 478 AGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 532



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 2/296 (0%)

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A+   N M + G   ++  +N +++ LCK  N+  A  +  D +   ++PD  T++ L+
Sbjct: 378 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 437

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K   L  A ++   M + G  PD +TY  +++ LCKAG+V+E     + M    C 
Sbjct: 438 DGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH 497

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L+  +   N++E+A    ++M + G+  D   +N LI  FC+    +  Y +
Sbjct: 498 PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLL 557

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + +  KG +  + T N ++    G+     A ++F  M+ K   AD+ TY ++I   C+
Sbjct: 558 FQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCK 617

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              +++A+     M  K FIPSM TF  +IN L     V  +  ++  M++ G+ P
Sbjct: 618 TANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 164/401 (40%), Gaps = 69/401 (17%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +R YAR  ++ +AV  F  M  +       A+N ++ AL  +    +A +++  M    +
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 198 -PDSKTYSILLEGW--GKDPN--------LPR---------------------AREIFRE 225
            PD  T++I L  +     P+        LP                      AR++F +
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 176

Query: 226 MVDTGCNPDIV-----------------------------------TYGIMVDVLCKAGR 250
           M+ T   P++                                    TY I +  LC+AGR
Sbjct: 177 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 236

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           + EA+ +V  M +    P    Y+ L+     ++  ++A+     M   G L D   YN 
Sbjct: 237 LPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNT 295

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKL 369
           +I  +CK +  +    +LKD   KG  P+  T   ++NGL   G+ + A  +F     K 
Sbjct: 296 IIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKG 355

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            + D   Y  ++K  C  G +  A +V   M  +   P + T++++INGLC  G +SD+ 
Sbjct: 356 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 415

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V++ D I KG  P   TF  L     K  + D    L E+M
Sbjct: 416 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 456



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++  + R  K+EEA      M + G+  +  +FN L+   C++ ++  A  +F
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             ++++ +   + T++ L+  +    N+  A +IF EM+  G   D  TY +++D  CK 
Sbjct: 559 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 618

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
             VD A   +  M      P+   +  ++++  V +R+  AV     M K G++ +V
Sbjct: 619 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 675



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 4/226 (1%)

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF-IYSVLVHTYGVENRIEDAVDTF 293
           +  Y  ++  L  AGRVD     V S  S +   T   +Y   +  Y    R+ DAVD F
Sbjct: 14  VPAYCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAF 73

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M+          YNA++ A   A      ++V   M + GV+P+  T  I L      
Sbjct: 74  ERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLT 133

Query: 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
                A R+ R    L    A  Y  ++      G    A +++  M      P++  F+
Sbjct: 134 ARPHIALRLLR---ALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN 190

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +++ LC +G V ++ +LL  +I++G+  +  T+    + L + GR
Sbjct: 191 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 236


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 203/404 (50%), Gaps = 7/404 (1%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLE-KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           SPK  L+  L Q    +SP  V  VL  + R     AF FF+WA++Q  Y H+   +  M
Sbjct: 76  SPK--LEAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEM 133

Query: 104 IESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           +  L+  R +     +V  M R       E F  +M  Y+R  K+  A+   ++MQK G 
Sbjct: 134 LSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGC 193

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRARE 221
             +++  N  ++ L  +  V KA E  + M+   + PD  TY+ L++G      +  A E
Sbjct: 194 APDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAME 253

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTY 280
           +   M+  GC PD ++Y  ++  LCK  RV+E  G+++ M +     P    Y+VL+H  
Sbjct: 254 MIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGL 313

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                 ++A++   E E      D   Y+A++ +FC   +      ++ +M SKG  P+ 
Sbjct: 314 AKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDV 373

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T + +++G    GE D+A ++ + M K  C+ +  T+T ++   C+ G+  +A+++   
Sbjct: 374 VTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNK 433

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            + + + PS  T+SV+++G   +G + +SC ++  M++KG  P+
Sbjct: 434 SEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPT 477



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 161/361 (44%), Gaps = 51/361 (14%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMV 227
           F+ +LS L  ++    A+ +   M  R +   ++ ++ L+  + +   L  A  +   M 
Sbjct: 130 FDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQ 189

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC PDI    + V+VL  AGRVD+AL   + M      P  + Y+ L+       R+ 
Sbjct: 190 KDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVV 249

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNII 346
           DA++    M +NG   D   Y  ++   CK  + + V  +L+ M N  G+ P+  T N++
Sbjct: 250 DAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVL 309

Query: 347 LNGLIGRGETDEAYRVFR-------------------------RMI-----------KLC 370
           ++GL   G  DEA    R                         RM            K C
Sbjct: 310 IHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGC 369

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY+ ++  FC+ GEL++A K+ K+M      P+  T + L+NGLC  G  S++  
Sbjct: 370 QPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWE 429

Query: 431 LLEDMIEKGIRPSGETF-----GKLRKLLIKEGREDVLKFLQE-------KMNLLVKEPL 478
           LL    E+   PS  T+     G  R+  +KE  + V++ LQ+       ++NLL+   L
Sbjct: 430 LLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLI-HAL 488

Query: 479 C 479
           C
Sbjct: 489 C 489



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 160/352 (45%), Gaps = 37/352 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
           +Y++++  L K ++ + +  L+  MR    L  +  T+ +++   A+    +EA+     
Sbjct: 269 SYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRE 328

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
            +      +   ++ ++ + C +  + +A+EI   M  +   PD  TYS +++G+ +   
Sbjct: 329 SEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGE 388

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L +AR++ + M    C P+ VT+  +++ LCK G+  EA  ++   +     P+   YSV
Sbjct: 389 LDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSV 448

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H +  E +++++ D  ++M + G        N LI A CK  K       ++   SKG
Sbjct: 449 VMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKG 508

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
                                             C  +   +T +I  F + G+LE A  
Sbjct: 509 ----------------------------------CTINVVNFTTVIHGFSRQGDLESALS 534

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +   M L    P + T++V+++ L  KG + ++  L+E M+ +G+ P+  T+
Sbjct: 535 LMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTY 586



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 131/285 (45%), Gaps = 18/285 (6%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + +++  L K+ +    W+L+N    +     + T+ ++M  + R  K++E+      M 
Sbjct: 411 HTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQML 470

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G        N L+ ALCK +   +A++  + C       +   ++ ++ G+ +  +L 
Sbjct: 471 QKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLE 530

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  +M  +  +PD+VTY ++VD L K GR+ EA G+V+ M +    PT   Y  ++
Sbjct: 531 SALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVI 590

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAM---YNALIGAFCKANKFKNVYRVLKDMNSK 334
           H Y      E      L      +LA   M   YN ++   C   K    Y +L  +   
Sbjct: 591 HRY-----CEKGNLEDLLNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRT 645

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAY----RVFRRM----IKLCE 371
               +++TC+I++   + RG   +AY    R+FRR     +KLC+
Sbjct: 646 ASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQ 690


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 194/383 (50%), Gaps = 4/383 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  +  +  Y +++  L K     +   L+  M   ++  +V  +  I+    + + ++
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+  F  M   G+  ++  ++ L+S LC       A  +   M +R I P+  T+S L+
Sbjct: 276 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 335

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A +++ EM+    +PDI TY  +++  C   R+DEA  + + M S  C 
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 395

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS L+  +    R+E+ ++ F EM + G++ +   Y  LI  F +A    N   V
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
            K M S GV PN  T NI+L+GL   G+  +A  VF  + +   E D  TY +MI+  C+
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 515

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G++E  ++++  + LK   P++  ++ +I+G C KG   ++  LL+ M E G  P+  T
Sbjct: 516 AGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGT 575

Query: 447 FGKLRKLLIKEG-REDVLKFLQE 468
           +  L +  +++G RE   + ++E
Sbjct: 576 YNTLIRARLRDGDREASAELIKE 598



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 185/358 (51%), Gaps = 3/358 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK+ +++++  L   M+T  +  ++ T+ I +  + R  ++  A+   
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C SK +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +  +MV  GC PD+VTYG +V+ LCK G +D AL ++K M+         IY
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 261

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        ++DA++ F EM+  GI  DV  Y++LI   C   ++ +  R+L DM  
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE 321

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  +  G+  EA +++  MIK   + D  TY+ +I  FC    L++
Sbjct: 322 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 381

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  +++ M  K   P++ T+S LI G C    V +   L  +M ++G+  +  T+  L
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 170/340 (50%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++    +   ++ A+     M+K  +  ++  +N ++  LCK K++  A  +F  M
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++ I PD  TYS L+           A  +  +M++   NP++VT+  ++D   K G++
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +   M      P  F YS L++ + + +R+++A   F  M       +V  Y+ L
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  FCKA + +    + ++M+ +G+  N+ T   +++G     + D A  VF++M+ +  
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +  TY +++   C+ G+L KA  V++Y++     P ++T++++I G+C  G V D   
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L  ++  KG+ P+   +  +     ++G ++    L +KM
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 138/268 (51%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    +++EA + F +M       N+  ++ L+   CK+K V +  E+F
Sbjct: 362 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELF 421

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+ L+ G+ +  +   A+ +F++MV  G +P+I+TY I++D LCK 
Sbjct: 422 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ +A+ + + +  +   P  + Y++++       ++ED  + F  +   G+  +V  Y
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC+    +    +LK M   G  PNS T N ++   +  G+ + +  + + M +
Sbjct: 542 NTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM-R 600

Query: 369 LC--EADADTYTMMIKMFCQGGELEKAF 394
            C    DA T  ++  M    G L+K+F
Sbjct: 601 SCGFAGDASTIGLVTNML-HDGRLDKSF 627



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 128/280 (45%), Gaps = 2/280 (0%)

Query: 182 VRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           V  A ++F D +K R  P    ++ LL    K         +  +M   G + D+ TY I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
            ++  C+  ++  AL ++  M      P     S L++ Y    RI DAV    +M + G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D   +  LI      NK      ++  M  +G  P+  T   ++NGL  RG+ D A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 361 RVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            + ++M K   EAD   Y  +I   C+   ++ A  ++  M  K   P + T+S LI+ L
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           C+ G  SD+  LL DMIE+ I P+  TF  L    +KEG+
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++DAVD F +M K+     +  +N L+ A  K NKF+ V  + + M + G++ +  T +
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I +N    R +   A  V  +M+KL  E D  T + ++  +C    +  A  +   M   
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ LI+GL      S++  L++ M+++G +P   T+G +   L K G  D+ 
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 464 KFLQEKM 470
             L +KM
Sbjct: 243 LSLLKKM 249



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 115/295 (38%), Gaps = 46/295 (15%)

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG------IMVDVLCKAGRVDEALGIVKS 260
           L+G G  P +P     F  +  +GC              I+ + L    +VD+A+ +   
Sbjct: 18  LQGIGNPPTVPS----FFNLCGSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGD 73

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M  +   P+   ++ L+      N+ E  +    +M+  GI  D+  Y+  I  FC+ ++
Sbjct: 74  MVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQ 133

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----------- 369
                 VL  M   G  P+  T + +LNG        +A  +  +M+++           
Sbjct: 134 LSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTT 193

Query: 370 -------------------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
                                    C+ D  TY  ++   C+ G+++ A  + K M+  +
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK 253

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
               +  ++ +I+GLC    + D+  L  +M  KGIRP   T+  L   L   GR
Sbjct: 254 IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 308


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 165/317 (52%), Gaps = 4/317 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    + + +  AV  FN M   G+  N+  +N L+S LC+      A  + 
Sbjct: 186 NVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLL 245

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D MK    P+  T++ L++ + K   +  A+E+++ M+     PD+ TY  +++ LC  
Sbjct: 246 RDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTY 305

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA  +   M+S    P    Y+ L+H +    R+ED    F EM + G++A+   Y
Sbjct: 306 GRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITY 365

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             LI  +C   +      V   M S+   P+ RT N++L+GL   G  ++A  +F+ M K
Sbjct: 366 TVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRK 425

Query: 369 LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             E D +  TYT++I+  C+ G++E AF ++  +  K   P++ T++ +I+G C +G + 
Sbjct: 426 R-EMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIH 484

Query: 427 DSCVLLEDMIEKGIRPS 443
           ++  L + M E G  P+
Sbjct: 485 EADALFKKMKEDGFLPN 501



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 167/328 (50%), Gaps = 2/328 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++  +    ++E+A+  F+ +   G   N+  +  L+  LCK++++  A EIF+ M
Sbjct: 154 TFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM 213

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            D  I P+  TY+ L+ G  +      A  + R+M+  G  P+++T+  ++D   K G++
Sbjct: 214 GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKI 273

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  + K M      P  F Y+ L++      R+++A   F  ME NG   +   Y  L
Sbjct: 274 MEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTL 333

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I  FCK+ + ++  ++  +M+ KG+  N+ T  +++ G    G  D A  VF +M  +  
Sbjct: 334 IHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRA 393

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY +++   C  G +EKA  ++KYM+ +    ++ T++++I G+C  G V D+  
Sbjct: 394 PPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFD 453

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           L   +  KG++P+  T+  +     + G
Sbjct: 454 LFCSLFSKGMKPNVITYTTMISGFCRRG 481



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 167/354 (47%), Gaps = 12/354 (3%)

Query: 129 LNVETFCIIMRKYARVQKV----------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           L++  FC  +R ++  +K+           EA+  F  M       ++  F  LLS + K
Sbjct: 35  LSLCGFCFWIRAFSNYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAK 94

Query: 179 SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
            K       +F+ M+   I P   T +I++    +     RA     +M+  G  PD+VT
Sbjct: 95  MKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVT 154

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           +  ++   C   R+++AL +   +     RP    Y+ L+H       +  AV+ F +M 
Sbjct: 155 FTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMG 214

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
            NGI  +V  YN+L+   C+  ++ +   +L+DM  +G+ PN  T   +++  +  G+  
Sbjct: 215 DNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIM 274

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA  +++ MI++    D  TYT +I   C  G L++A +++  M+   + P+  T++ LI
Sbjct: 275 EAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +G C    V D   +  +M +KG+  +  T+  L +     GR DV + +  +M
Sbjct: 335 HGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQM 388



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 158/352 (44%), Gaps = 22/352 (6%)

Query: 80  AFCFFKWAEKQQNYEHSVR-AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCII 137
            FCF  W     NY   +R   H++        Q+    DL   M   R L ++  F  +
Sbjct: 39  GFCF--WIRAFSNYRKILRNGLHNL--------QFNEALDLFTRMVHSRPLPSIVDFTRL 88

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRF 196
           +   A++++ +  +  F  MQ  G++  L   N +++ +C+S    R +  +   MK  F
Sbjct: 89  LSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGF 148

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD  T++ LL G+     +  A  +F ++V  G  P++VTY  ++  LCK   ++ A+ 
Sbjct: 149 EPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVE 208

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           I   M     RP    Y+ LV       R  DA     +M K GI  +V  + ALI AF 
Sbjct: 209 IFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFV 268

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD- 375
           K  K      + K M    V P+  T   ++NGL   G  DEA    R+M  L E++   
Sbjct: 269 KVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEA----RQMFYLMESNGYY 324

Query: 376 ----TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
               TYT +I  FC+   +E   K++  M  K  + +  T++VLI G C  G
Sbjct: 325 PNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVG 376



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +R Y+ +++ L      +    +   MR + M +N+ T+ II++   +V KVE+A   F 
Sbjct: 397 IRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFC 456

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPD 199
            +   G+  N+  +  ++S  C+   + +A  +F  MK D F+P+
Sbjct: 457 SLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 185/369 (50%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK++++ ++  L   M R     N+ T+ I++  + R  ++  A+   
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 69  GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 128

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC P++VTYG++V+ LCK G +D A  ++  M++        I+
Sbjct: 129 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIF 188

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ +      ++DA++ F EME  GI  +V  Y++LI   C   ++ +  ++L DM  
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           K + PN  T N +++  +  G+  EA ++   MIK   + D  TY  +I  FC    L+K
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++++M  K   P + T++ LI G C    V D   L  +M  +G+     T+  L +
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368

Query: 453 LLIKEGRED 461
            L  +G  D
Sbjct: 369 GLFHDGDCD 377



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 188/372 (50%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  + ++  Y  ++  L K     + ++L+N M   ++  +V  F  I+    + + V+
Sbjct: 143 QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVD 202

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           +A+  F  M+  G+  N+  ++ L+S LC       A ++  D ++ +  P+  T++ L+
Sbjct: 203 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 262

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+     A ++  +M+    +PDI TY  +++  C   R+D+A  + + M S  C 
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+  +    R+ED  + F EM   G++ D   Y  LI          N  +V
Sbjct: 323 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 382

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S GV P+  T +I+L+GL   G+ ++A  VF  M K   + D   YT MI+  C+
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++  + ++  + LK   P++ T++ +I+GLC K ++ ++  LL+ M E G  P   T
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT 502

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 503 YNTLIRAHLRDG 514



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 174/358 (48%), Gaps = 7/358 (1%)

Query: 68  DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           D L K+R+    A   FK  E  +    +V  Y S+I  L    ++     L++ M  K+
Sbjct: 193 DSLCKYRHVDD-ALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250

Query: 128 M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +  N+ TF  ++  + +  K  EA    + M K  +  ++  +N L++  C    + KA+
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 310

Query: 187 EIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           ++F+ M  KD F PD  TY+ L++G+ K   +    E+FREM   G   D VTY  ++  
Sbjct: 311 QMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L   G  D A  + K M S    P    YS+L+       ++E A++ F  M+K+ I  D
Sbjct: 370 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           + +Y  +I   CKA K  + + +   ++ KGV PN  T N +++GL  +    EAY + +
Sbjct: 430 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 489

Query: 365 RMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +M +     D+ TY  +I+   + G+   + ++ + M+  RF+    T  ++ N L D
Sbjct: 490 KMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHD 547



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    ++++A   F  M       +L  +N L+   CKSK V    E+F
Sbjct: 289 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 348

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + D+ TY+ L++G   D +   A+++F++MV  G  PDI+TY I++D LC  
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++AL +   M  +  +   +IY+ ++       +++D  D F  +   G+  +V  Y
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 468

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I   C     +  Y +LK M   G  P+S T N ++   +  G+   +  + R M +
Sbjct: 469 NTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM-R 527

Query: 369 LCE--ADADTYTMMIKMFCQGGELEKAF 394
            C    DA T  ++  M    G L+K+F
Sbjct: 528 SCRFVGDASTIGLVANML-HDGRLDKSF 554



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 1/269 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K R +P    ++ LL    K         +  +M   G + ++ TY I+++  C+  ++
Sbjct: 2   VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL ++  M      P+    S L++ Y    RI DAV    +M + G   D   +  L
Sbjct: 62  SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I      NK      ++  M  +G  PN  T  +++NGL  RG+ D A+ +  +M     
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           EAD   +  +I   C+   ++ A  ++K M+ K   P++ T+S LI+ LC  G  SD+  
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL DMIEK I P+  TF  L    +KEG+
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGK 270



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 135/304 (44%), Gaps = 2/304 (0%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMV 227
           FN LLSA+ K K       + + M+   I  +  TY+IL+  + +   +  A  +  +M+
Sbjct: 13  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             G  P IVT   +++  C   R+ +A+ +V  M     RP +  ++ L+H   + N+  
Sbjct: 73  KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +AV     M + G   ++  Y  ++   CK       + +L  M +  +  +    N I+
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192

Query: 348 NGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           + L      D+A  +F+ M  K    +  TY+ +I   C  G    A ++   M  K+  
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P++ TF+ LI+    +G   ++  L +DMI++ I P   T+  L        R D  K +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 467 QEKM 470
            E M
Sbjct: 313 FEFM 316



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M K+  L  +  +N L+ A  K  KF  V  + + M   G++ N  T NI++N    R +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 356 TDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
              A  +  +M+KL  E    T + ++  +C G  +  A  +   M    + P   TF+ 
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LI+GL      S++  L++ M+++G +P+  T+G +   L K G  D+   L  KM
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 206/427 (48%), Gaps = 15/427 (3%)

Query: 56  QSGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           + G  V+P++V    V+  F   G +  A    +    +      V  Y S+++ L +  
Sbjct: 68  RDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDG 127

Query: 112 QYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAVYTF-NVMQKYGVTQNL 166
           +     ++V  M+ K    VE    TF  ++  +   +KV+EA+  +  ++       ++
Sbjct: 128 KMDRACEMVREMKLK---GVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +  L+   CKS N+ KA ++   M+ R  +P+  TYS LL G  K  +L +A ++FR 
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M   GC P++VTY  ++  LC A +VD A  ++  M +T C P +  Y+ L+  Y    R
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGR 304

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCN 344
           IE+A   F EM     L D   Y  L+  FC A++ +    +L++M  + G+ P+  T +
Sbjct: 305 IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYS 364

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I++ G        EA    + MI +    +A TY+ +I   C+ G ++ A +V K M  K
Sbjct: 365 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNK 424

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
           R  PS+ TF+ +I  LC  G + ++  LL  M   G+ P   T+  L +   + GR ++ 
Sbjct: 425 RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIA 484

Query: 464 KFLQEKM 470
             L E M
Sbjct: 485 YELFEVM 491



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 176/346 (50%), Gaps = 6/346 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            V T+ II+  + +  ++++A+  F  M+++ V  N   +N +++ LCK++   KA E+ 
Sbjct: 6   TVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVL 64

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDVLC 246
             M+D     PD  TYS ++ G+ K   + RA EI REMV   G  PD+VTY  +VD LC
Sbjct: 65  KEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLC 124

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE-MEKNGILADV 305
           + G++D A  +V+ M      P  F +S L+  +    ++++A+  + E +  +    DV
Sbjct: 125 RDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y ALI  FCK+   +   ++L  M  +   PN  T + +L+GL   G+ D+A  +FRR
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M  K C  +  TYT +I   C   +++ A  +   M      P   +++ L++G C  G 
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGR 304

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + ++  L ++M  K   P   T+  L +      R +  +FL E M
Sbjct: 305 IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENM 350



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 146/309 (47%), Gaps = 37/309 (11%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TG 230
           ++   CK+  +++A   F+ M++   P+ +TY++++ G  K     +A E+ +EM D   
Sbjct: 13  IIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKS 72

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+VTY  +++  CK G +D A  I++ M                             
Sbjct: 73  VAPDLVTYSTVINGFCKQGEMDRACEILREM----------------------------- 103

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
                + ++GI  DV  Y +++   C+  K      ++++M  KGV P+  T + ++ G 
Sbjct: 104 -----VTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 351 IGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               + DEA ++++ ++     + D  TYT +I  FC+ G LEKA K+   M+ ++ +P+
Sbjct: 159 CNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPN 218

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           + T+S L++GLC  G +  +  L   M  KG  P+  T+  L   L    + D  + L +
Sbjct: 219 VVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMD 278

Query: 469 KMNLLVKEP 477
           +M      P
Sbjct: 279 EMTATCCPP 287



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 157/391 (40%), Gaps = 81/391 (20%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y S++  L K        DL   M +K  + NV T+  ++       KV+ A    
Sbjct: 218 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 277

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKDRFI----------- 197
           + M       +  ++N LL   C+   + +A+++F       C+ DR             
Sbjct: 278 DEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNA 337

Query: 198 --------------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
                               PD  TYSI++ G+ +      A E  +EM+     P+ VT
Sbjct: 338 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 397

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++D LCKAGRVD A+ ++K+M                    V  R+E +V TF    
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNM--------------------VNKRVEPSVGTF---- 433

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
                      N++IGA C+       +++L  M + G+ P   T   +L G    G  +
Sbjct: 434 -----------NSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRME 482

Query: 358 EAYRVFRRMIKLCEADA--------DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
            AY +F  M K  +  +          ++ +I+  C+  E++KA  V + ++ +   P+ 
Sbjct: 483 IAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAE 542

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
                +++GL   G   ++  L+  + + G+
Sbjct: 543 EDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           +N   +   Y S+I+ L K  +     +++  M  KR+  +V TF  ++    R+  ++E
Sbjct: 389 RNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDE 448

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK---------DRFIPDS 200
           A      M  +G+   +  +  LL    ++  +  A E+F+ M+            +P+ 
Sbjct: 449 AWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPE- 507

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           + +S L+ G  K   + +A  +  E+    C P       +VD L +AGR +EA  ++ S
Sbjct: 508 QAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINS 567

Query: 261 M 261
           +
Sbjct: 568 I 568


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 198/407 (48%), Gaps = 5/407 (1%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ-QNYEHSVRAYHSMIESL 107
           V+D  +D+ G++        +L    +  +L       A+      +  V  ++ +I++L
Sbjct: 140 VVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKAL 199

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
            +  Q +    ++  M +  ++  E TF  +M+ Y     ++ A+     M ++G + + 
Sbjct: 200 CRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSN 259

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
            + N ++   CK   V  A      M  +D F PD  T++ L+ G  K  ++  A EI  
Sbjct: 260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD 319

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M+  G +PD+ TY  ++  LCK G V EA+ ++  M +  C P +  Y+ L+ T   EN
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           ++E+A +    +   GIL DV  +N+LI   C     +    + ++M SKG  P+  T N
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYN 439

Query: 345 IILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           ++++ L  +G+ DEA  + ++M +  C     TY  +I  FC+  +  +A +++  M++ 
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
               +  T++ LI+GLC    V D+  L++ MI +G +P   T+  L
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 182/366 (49%), Gaps = 3/366 (0%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  F +    Q  +      +++++  L K    +   ++++ M  +    +V T+  ++
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
               ++ +V+EAV   + M     + N   +N L+S LCK   V +A E+   +  +  +
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  T++ L++G     N   A E+F EM   GC PD  TY +++D LC  G++DEAL +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +K M+ + C  +   Y+ L+  +   N+  +A + F EME +G+  +   YN LI   CK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
           + + ++  +++  M  +G  P+  T N +L      G+  +A  + + M    CE D  T
Sbjct: 518 SRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT 577

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I   C+ G +E A K+ + +++K    + H ++ +I GL  K   +++  L  +M+
Sbjct: 578 YGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREML 637

Query: 437 EKGIRP 442
           E+   P
Sbjct: 638 EQNEAP 643



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 190/417 (45%), Gaps = 41/417 (9%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           Q+ Y+  V  Y+S+I  L K+ + +   ++++ M T+    N  T+  ++    +  +VE
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------CMKDRF----IP 198
           EA     V+   G+  ++  FN L+  LC ++N R A E+F+      C  D F    + 
Sbjct: 383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLI 442

Query: 199 DSK--------------------------TYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           DS                           TY+ L++G+ K      A EIF EM   G +
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
            + VTY  ++D LCK+ RV++A  ++  M     +P  + Y+ L+  +     I+ A D 
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADI 562

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M  NG   D+  Y  LI   CKA + +   ++L+ +  KG+       N ++ GL  
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622

Query: 353 RGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQ-GGELEKAFKVWKYMKLKRFIPSM 409
           + +T EA  +FR M++  EA  DA +Y ++ +  C  GG + +A      +  K F+P  
Sbjct: 623 KRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEF 682

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
            +  +L  GL    +  ++ V L +M+ +  R S E    ++ LL     +D L  L
Sbjct: 683 SSLYMLAEGLLTLSM-EETLVKLVNMVMQKARFSEEEVSMVKGLLKIRKFQDALATL 738



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/512 (21%), Positives = 217/512 (42%), Gaps = 79/512 (15%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNA--GTLAFCFFKWAEKQQNYEHSVRAY 100
           L+ P   +  A   S    S ++   +L+  R+    + A   F  A K+ N+      Y
Sbjct: 29  LTPPSSTISFASPHSAALSSTDV--KLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALY 86

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN---- 155
             ++  L +   +  M  ++  M++ R  +   TF I++  YA+ +  +E +   +    
Sbjct: 87  EEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMID 146

Query: 156 --------------------------------VMQKYGVTQNLAAFNGLLSALCKSKNVR 183
                                            M  +G+  +++ FN L+ ALC++  +R
Sbjct: 147 EFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLR 206

Query: 184 KAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
            A  + + M     +PD KT++ +++G+ ++ +L  A  I  +MV+ GC+   V+  ++V
Sbjct: 207 PAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIV 266

Query: 243 DVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
              CK GRV++AL  ++ M +     P  + ++ LV+       ++ A++    M + G 
Sbjct: 267 HGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY 326

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             DV  YN++I   CK  + K    VL  M ++  +PN+ T N +++ L    + +EA  
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386

Query: 362 VFRRMI------------------------------------KLCEADADTYTMMIKMFC 385
           + R +                                     K CE D  TY M+I   C
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G+L++A  + K M+L     S+ T++ LI+G C      ++  + ++M   G+  +  
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           T+  L   L K  R +    L ++M +  ++P
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 197/412 (47%), Gaps = 39/412 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  ++ +   LA+ +QY ++  L   M  K +  ++ T  I++  + R +K+  A    
Sbjct: 89  TVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAM 148

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             + K G   N   FN LL+ LC    V +A E+ DCM   + +PD  T + ++ G    
Sbjct: 149 GKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLK 208

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A ++   M+  GC P+  TYG +++ +CK+G    AL +++ M+    +P    Y
Sbjct: 209 DRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTY 268

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++     + R++DA+  F EME  GI A+V  YN+LIG+FC   ++ +  ++L+DM +
Sbjct: 269 TIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMIT 328

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-------------------------- 367
           + + PN  T + +++ L+  G+  EA  ++  MI                          
Sbjct: 329 RKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDE 388

Query: 368 ----------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                     K C+ D  TY ++I  FC+  +++   ++++ M L+  I    T+S LI 
Sbjct: 389 ANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQ 448

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           G C    +  +  + ++M+ +G+ P   T+  L   L   G  E+ L  L +
Sbjct: 449 GFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQ 500



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 184/355 (51%), Gaps = 3/355 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  + K        DL+  M  +++  +V T+ II+    +  ++++A+  F+ M
Sbjct: 232 TYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEM 291

Query: 158 QKYGVTQNLAAFNGLLSALCK-SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           +  G+  N+  +N L+ + C   +    AQ + D +  +  P+  T+S L++   K+  L
Sbjct: 292 ETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKL 351

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A++++ EM+  G  P+ +TY  ++  LC   R+DEA  ++  M S  C P  + Y++L
Sbjct: 352 TEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNIL 411

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +    +++D +  F +M   G++AD   Y+ LI  FC++ K     +V ++M S+GV
Sbjct: 412 INGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGV 471

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P   T  I+L+GL   GE +EA  +  +M K   E D   Y ++I   C   +++ A+ 
Sbjct: 472 HPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWS 531

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++  +  K     + +++++++GLC +  +S++  L   M E G  P G T+  L
Sbjct: 532 LFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTL 586



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 13/327 (3%)

Query: 80  AFCFF-KWAEKQQ--------NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-L 129
           +FC F +W +  Q            +V  + ++I+SL K  +     DL N M T+ +  
Sbjct: 309 SFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEP 368

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  ++      ++++EA    ++M   G   ++  +N L++  CK+K V     +F
Sbjct: 369 NTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLF 428

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  I D+ TYS L++G+ +   L  A+++F+EMV  G +P I+TY I++D LC  
Sbjct: 429 RKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDN 488

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++EALGI+  M          IY++++H     N+++DA   F  +   G+  D+  Y
Sbjct: 489 GELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSY 548

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK +       + + M   G  P+  T N ++   +   +   + ++   M K
Sbjct: 549 NIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEM-K 607

Query: 369 LCEADADTYTMMIKM-FCQGGELEKAF 394
            C   +D  T+ I M     GEL+K+F
Sbjct: 608 RCGFSSDASTVKIVMDMLSSGELDKSF 634



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 6/337 (1%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYS 204
           K ++AV  F  M +      +  FN L   L ++K       +   M+ + I  D  T +
Sbjct: 70  KKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLN 129

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I++  + +   L  A     ++   G  P+ VT+  +++ LC  GRV EA+ +V  M  +
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLS 189

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P     + +V+   +++R+ +AVD    M  NG   +   Y  ++   CK+    + 
Sbjct: 190 QHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASA 249

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
             +L+ M  + + P+  T  II++ L   G  D+A   F  M  K  +A+  TY  +I  
Sbjct: 250 LDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGS 309

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC  G  +   ++ + M  ++  P++ TFS LI+ L  +G ++++  L  +MI +GI P+
Sbjct: 310 FCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPN 369

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
             T+  L   L  + R D      + M+L+V +  CD
Sbjct: 370 TITYNSLIYGLCNDKRLDE---ANQMMDLMVSKG-CD 402



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 1/178 (0%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ + +DAV  F  M ++  L  V  +N L G   +  ++  V  + K M  KG+A +  
Sbjct: 67  VDIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLY 126

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T NI++N    R +   A+    ++ KL  E +  T+  ++   C  G + +A ++   M
Sbjct: 127 TLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCM 186

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            L + +P + T + ++NGLC K  VS++  L+  M+  G +P+  T+G +   + K G
Sbjct: 187 VLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSG 244


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 166/334 (49%), Gaps = 2/334 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           LV+ MR   + +V T+  ++R   +    +EA++    M   G   +   +N ++   CK
Sbjct: 244 LVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 303

Query: 179 SKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
              V++A E+  D +   F+PD  TY  L+ G   + ++ RA E+F E    G  PDIV 
Sbjct: 304 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVV 363

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  +V  LC  G +  AL ++  M    C P    Y+++++       I DA     +  
Sbjct: 364 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 423

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G L DV  +N LI  +CK  K  +  ++++ M   G+AP++ T N +LNGL   G+ +
Sbjct: 424 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 483

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E    F+ MI K C  +  TY ++I+ FC+  ++E+A KV   M  +   P   +F+ LI
Sbjct: 484 EVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI 543

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            G C  G +  + +L + + EKG   + +TF  L
Sbjct: 544 YGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTL 577



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 179/354 (50%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I+   KI   Q   +L+ +A+    + +  T+C ++        VE A+  FN  Q
Sbjct: 294 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 353

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G+  ++  +N L+  LC    +  A ++ + M +    PD +TY+I++ G  K  N+ 
Sbjct: 354 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 413

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  + +  G  PD+ T+  ++D  CK  ++D AL +V+ M      P +  Y+ ++
Sbjct: 414 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 473

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +      ++ +  +TF EM   G   +   YN LI  FC++NK +   +V+  M+ +G+ 
Sbjct: 474 NGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 533

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P++ + N ++ G    G+ + AY +F+++  K   A ADT+  +I  F     +  A K+
Sbjct: 534 PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKI 593

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +  M  K      +T+ VLI+G C    V  + + L +MI+KG  PS  TFG++
Sbjct: 594 FDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 647



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 183/415 (44%), Gaps = 24/415 (5%)

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
           P I   +L    + G +A+C          + H  R                 ++D    
Sbjct: 137 PHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ----------------LFD--QM 178

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           + T    N+  F  ++    +   V EA      + + G++ NL  +N  +  LC++  +
Sbjct: 179 LHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRL 238

Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
            +A  + D M+   +PD  TY+ L+ G  K      A    R M++ GC PD  TY  ++
Sbjct: 239 PEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 298

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D  CK   V EA  ++K        P    Y  L++    E  +E A++ F E +  GI 
Sbjct: 299 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIK 358

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+ +YN+L+   C      +  +V+ +M  +G  P+ +T NI++NGL   G   +A  V
Sbjct: 359 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 418

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               I K    D  T+  +I  +C+  +L+ A ++ + M      P   T++ ++NGLC 
Sbjct: 419 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 478

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL-----RKLLIKEGREDVLKFLQEKMN 471
            G V++     ++MI KG  P+  T+  L     R   ++E  + ++K  QE ++
Sbjct: 479 AGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 533



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 2/296 (0%)

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A+   N M + G   ++  +N +++ LCK  N+  A  +  D +   ++PD  T++ L+
Sbjct: 379 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 438

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K   L  A ++   M + G  PD +TY  +++ LCKAG+V+E     + M    C 
Sbjct: 439 DGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH 498

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L+  +   N++E+A    ++M + G+  D   +N LI  FC+    +  Y +
Sbjct: 499 PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLL 558

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + +  KG +  + T N ++    G+     A ++F  M+ K   AD+ TY ++I   C+
Sbjct: 559 FQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCK 618

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              +++A+     M  K FIPSM TF  +IN L     V  +  ++  M++ G+ P
Sbjct: 619 TANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 164/401 (40%), Gaps = 69/401 (17%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +R YAR  ++ +AV  F  M  +       A+N ++ AL  +    +A +++  M    +
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 198 -PDSKTYSILLEGW--GKDPN--------LPR---------------------AREIFRE 225
            PD  T++I L  +     P+        LP                      AR++F +
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 177

Query: 226 MVDTGCNPDIV-----------------------------------TYGIMVDVLCKAGR 250
           M+ T   P++                                    TY I +  LC+AGR
Sbjct: 178 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 237

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           + EA+ +V  M +    P    Y+ L+     ++  ++A+     M   G L D   YN 
Sbjct: 238 LPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNT 296

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKL 369
           +I  +CK +  +    +LKD   KG  P+  T   ++NGL   G+ + A  +F     K 
Sbjct: 297 IIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKG 356

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            + D   Y  ++K  C  G +  A +V   M  +   P + T++++INGLC  G +SD+ 
Sbjct: 357 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 416

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V++ D I KG  P   TF  L     K  + D    L E+M
Sbjct: 417 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 457



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++  + R  K+EEA      M + G+  +  +FN L+   C++ ++  A  +F
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             ++++ +   + T++ L+  +    N+  A +IF EM+  G   D  TY +++D  CK 
Sbjct: 560 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 619

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
             VD A   +  M      P+   +  ++++  V +R+  AV     M K G++ +V
Sbjct: 620 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 676



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 4/226 (1%)

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF-IYSVLVHTYGVENRIEDAVDTF 293
           +  Y  ++  L  AGRVD     V S  S +   T   +Y   +  Y    R+ DAVD F
Sbjct: 15  VPAYCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAF 74

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M+          YNA++ A   A      ++V   M + GV+P+  T  I L      
Sbjct: 75  ERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLT 134

Query: 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
                A R+ R    L    A  Y  ++      G    A +++  M      P++  F+
Sbjct: 135 ARPHIALRLLR---ALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN 191

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +++ LC +G V ++ +LL  +I++G+  +  T+    + L + GR
Sbjct: 192 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 237


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 165/307 (53%), Gaps = 4/307 (1%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDR 195
           I+    + ++V +A   F  +++ G+  N+  +  L++ LC S     A  +  D +K +
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+  TYS LL+ + K+  +  A+E+F EMV    +PDIVTY  +V+ LC   R+DEA 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEAN 315

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M S  C      Y+ L++ +    R+ED +  F EM + G++++   YN LI  F
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
            +A            M+  G++P+  T NI+L GL   GE ++A  +F  M K  E D D
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLD 434

Query: 376 --TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT +I+  C+ G++E+A+ ++  + LK   P + T++ +++GLC KG++ +   L  
Sbjct: 435 IVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYT 494

Query: 434 DMIEKGI 440
            M ++G+
Sbjct: 495 KMKQEGL 501



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 170/336 (50%), Gaps = 2/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++  + R  +V +AV   + M + G   ++ A+N ++ +LCK+K V  A + F  ++ + 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           I P+  TY+ L+ G         A  +  +M+     P+++TY  ++D   K G+V EA 
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + + M      P    YS LV+   + +RI++A   F  M   G LADV  YN LI  F
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CKA + ++  ++ ++M+ +G+  N+ T N ++ G    G+ D+A   F +M       D 
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++   C  GELEKA  +++ M+ +     + T++ +I G+C  G V ++  L   
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  KG++P   T+  +   L  +G    ++ L  KM
Sbjct: 461 LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 164/339 (48%), Gaps = 12/339 (3%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK------NVRKAQEIFDCMKDRFIPD 199
           K+ +A+  F+ M K     ++  FN LLSA+ K K      ++ K  E+     D +   
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY--- 121

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T++I++  +     +  A  I  +M+  G  PD VT G +V+  C+  RV +A+ +V 
Sbjct: 122 --TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     +P    Y+ ++ +     R+ DA D F E+E+ GI  +V  Y AL+   C ++
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 239

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYT 378
           ++ +  R+L DM  K + PN  T + +L+  +  G+  EA  +F  M+++  + D  TY+
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++   C    +++A +++  M  K  +  + +++ LING C    V D   L  +M ++
Sbjct: 300 SLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G+  +  T+  L +   + G  D  +    +M+     P
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP 398



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 1/198 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           +++EA   F++M   G   ++ ++N L++  CK+K V    ++F  M  R  + ++ TY+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L++G+ +  ++ +A+E F +M   G +PDI TY I++  LC  G +++AL I + M   
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                   Y+ ++       ++E+A   F  +   G+  D+  Y  ++   C       V
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 489

Query: 325 YRVLKDMNSKGVAPNSRT 342
             +   M  +G+  N  T
Sbjct: 490 EALYTKMKQEGLMKNDCT 507



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +D  L  A ++F +MV +   P IV +  ++  + K  + D  + + K M+    R   +
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++++++ +    ++  A+    +M K G   D     +L+  FC+ N+  +   ++  M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G  P                                  D   Y  +I   C+   + 
Sbjct: 182 VEIGYKP----------------------------------DIVAYNAIIDSLCKTKRVN 207

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AF  +K ++ K   P++ T++ L+NGLC+    SD+  LL DMI+K I P+  T+  L 
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267

Query: 452 KLLIKEGREDVLKFLQEKMNLLVKEP 477
              +K G+    K L E+M  +  +P
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDP 293


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 202/433 (46%), Gaps = 11/433 (2%)

Query: 27  PSTE-ALDAAKSISKIMLSSPKVVLDT-ALDQSGIRVSPEIVEDVLEK----FRNAGTLA 80
           PS + AL   K +    +++ + + D   L +  + V   IV D+L +     R A    
Sbjct: 118 PSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAF 177

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMR 139
            CF+   EK       +   + M+    K+ + ++ W L   M R +    V TF I++ 
Sbjct: 178 KCFYMMKEK--GIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVN 235

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
              +  K+++A      M+  G   N+ ++N ++       N+  A+ I D M+ + I P
Sbjct: 236 VLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEP 295

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           DS TY  L+ G  K+  L  A  +F +MV+ G  P+ VTY  ++D  C  G ++ A    
Sbjct: 296 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 355

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M      P+   Y++LVH   +E R+ +A D   EM K GI+ D   YN LI  + + 
Sbjct: 356 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 415

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              K  + +  +M SKG+ P   T   ++  L  R    EA  +F +++ +    D   +
Sbjct: 416 GNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 475

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             M+   C  G +E+AF + K M  K   P   TF+ L+ G C +G V ++ +LL++M  
Sbjct: 476 NAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKR 535

Query: 438 KGIRPSGETFGKL 450
           +GI+P   ++  L
Sbjct: 536 RGIKPDHISYNTL 548



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 179/364 (49%), Gaps = 9/364 (2%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
           ++ +V +Y+++I   +     +    +++AMR K +  +  T+  ++    +  ++EEA 
Sbjct: 258 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 317

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
             F+ M + G+  N   +N L+   C   ++ +A    D M K   +P   TY++L+   
Sbjct: 318 GLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 377

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             +  +  A ++ +EM   G  PD +TY I+++   + G   +A  +   M S    PT 
Sbjct: 378 FMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTH 437

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L++     NR+++A D F ++   G+  DV M+NA++   C     +  + +LK+
Sbjct: 438 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKE 497

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYTMMIKMFCQ 386
           M+ K V P+  T N ++ G    G+ +EA  +     RR IK    D  +Y  +I  + +
Sbjct: 498 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK---PDHISYNTLISGYGR 554

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++ AF+V   M    F P++ T++ LI  LC       +  LL++M+ KGI P   T
Sbjct: 555 RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDST 614

Query: 447 FGKL 450
           +  L
Sbjct: 615 YLSL 618



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 173/342 (50%), Gaps = 2/342 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           +ET   ++  + ++ ++E A   +  M +  ++  +  FN +++ LCK   ++KA+E   
Sbjct: 192 IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIG 251

Query: 191 CMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M+   F P+  +Y+ ++ G+    N+  AR I   M   G  PD  TYG ++  +CK G
Sbjct: 252 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 311

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R++EA G+   M      P +  Y+ L+  Y  +  +E A     EM K GI+  V+ YN
Sbjct: 312 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYN 371

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
            L+ A     +      ++K+M  KG+ P++ T NI++NG    G   +A+ +   M+ K
Sbjct: 372 LLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK 431

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E    TYT +I +  +   +++A  +++ +  +   P +  F+ +++G C  G V  +
Sbjct: 432 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERA 491

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            +LL++M  K + P   TF  L +   +EG+ +  + L ++M
Sbjct: 492 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 533



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDC---MKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           F+ L+   C+   +R+A E F C   MK++  +P  +T + +L  + K   +  A  ++ 
Sbjct: 160 FDLLVRVCCE---LRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 216

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM     +  + T+ IMV+VLCK G++ +A   +  M+    +P    Y+ ++H Y    
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 276

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            IE A      M   GI  D   Y +LI   CK  + +    +   M   G+ PN+ T N
Sbjct: 277 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 336

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +++G   +G+ + A+     M+K        TY +++      G + +A  + K M+ K
Sbjct: 337 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 396

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             IP   T+++LING    G    +  L  +M+ KGI P+  T+  L  +L +  R
Sbjct: 397 GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNR 452



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 8/258 (3%)

Query: 220 REIFREMV---DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
           RE+F E+    D       + + ++V V C+  R DEA      M      P     + +
Sbjct: 139 RELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDM 198

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   NR+E A   + EM +  I + V  +N ++   CK  K K     +  M   G 
Sbjct: 199 LSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGF 258

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  + N I++G   RG  + A R+   M +K  E D+ TY  +I   C+ G LE+A  
Sbjct: 259 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 318

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  M     +P+  T++ LI+G C+KG +  +    ++M++KGI PS  T+  L   L 
Sbjct: 319 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALF 378

Query: 456 KEGR----EDVLKFLQEK 469
            EGR    +D++K +++K
Sbjct: 379 MEGRMGEADDMIKEMRKK 396



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +++ L+   C+  +    ++    M  KG+ P   TCN +L+  +     + A+ ++  M
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            +L   +   T+ +M+ + C+ G+L+KA +   +M+   F P++ +++ +I+G   +G +
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             +  +L+ M  KGI P   T+G L   + KEGR +    L +KM
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 323



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           VE A      M +  V  +   FN L+   C+   V +A+ + D MK R I PD  +Y+ 
Sbjct: 488 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNT 547

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G+G+  ++  A  +  EM+  G NP ++TY  ++  LCK    D A  ++K M +  
Sbjct: 548 LISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG 607

Query: 266 CRPTSFIYSVLVHTYG-VENRIED 288
             P    Y  L+   G V+  +ED
Sbjct: 608 ISPDDSTYLSLIEGMGNVDTLVED 631


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 168/314 (53%), Gaps = 4/314 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++  +  I+    + ++V +A   F  +++ G+  N+  +  L++ LC S     A  + 
Sbjct: 292 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 351

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D +K +  P+  TYS LL+ + K+  +  A+E+F EMV    +PDIVTY  +++ LC  
Sbjct: 352 SDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLH 411

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+DEA  +   M S  C      Y+ L++ +    R+ED +  F EM + G++++   Y
Sbjct: 412 DRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 471

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  F +A            M+  G++P+  T NI+L GL   GE ++A  +F  M K
Sbjct: 472 NTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 531

Query: 369 LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             E D D  TYT +I+  C+ G++E+A+ ++  + LK   P + T++ +++GLC KG++ 
Sbjct: 532 R-EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLH 590

Query: 427 DSCVLLEDMIEKGI 440
           +   L   M ++G+
Sbjct: 591 EVEALYTKMKQEGL 604



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 188/374 (50%), Gaps = 4/374 (1%)

Query: 99   AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
             Y  ++  L K     + ++L+N M   ++   V  +  I+    + + +++A+  F  M
Sbjct: 837  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 896

Query: 158  QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            +  G+  N+  ++ L+S LC       A  +   M +R I PD  T+S L++ + K+  L
Sbjct: 897  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956

Query: 217  PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              A +++ EMV    +P IVTY  +++  C   R+DEA  + + M S  C P    Y+ L
Sbjct: 957  VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 277  VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            +  +    R+E+ ++ F EM + G++ +   YN LI    +A        + K+M S GV
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 337  APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
             PN  T N +L+GL   G+ ++A  VF  + +   E    TY +MI+  C+ G++E  + 
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 396  VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
            ++  + LK   P +  ++ +I+G C KG   ++  L ++M E G  P+   +  L +  +
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 1196

Query: 456  KEG-REDVLKFLQE 468
            ++G RE   + ++E
Sbjct: 1197 RDGDREASAELIKE 1210



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 191/378 (50%), Gaps = 3/378 (0%)

Query: 96   SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
            S+  +  ++ ++AK+ ++ ++  L   M+   +  N  T+ I++  + R  ++  A+   
Sbjct: 694  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVL 753

Query: 155  NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
              M K G   N+   + LL+  C SK + +A  + D M    + P++ T++ L+ G    
Sbjct: 754  GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 813

Query: 214  PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                 A  +   MV  GC PD+VTYG++V+ LCK G  D A  ++  M+     P   IY
Sbjct: 814  NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 873

Query: 274  SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            + ++        ++DA++ F EME  GI  +V  Y++LI   C   ++ +  R+L DM  
Sbjct: 874  NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 933

Query: 334  KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
            + + P+  T + +++  +  G+  EA +++  M+K   +    TY+ +I  FC    L++
Sbjct: 934  RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 993

Query: 393  AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
            A +++++M  K   P + T++ LI G C    V +   +  +M ++G+  +  T+  L +
Sbjct: 994  AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 1053

Query: 453  LLIKEGREDVLKFLQEKM 470
             L + G  D+ + + ++M
Sbjct: 1054 GLFQAGDCDMAQEIFKEM 1071



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 3/353 (0%)

Query: 93   YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
            Y+ +   ++++I  L    +      L++ M  K    ++ T+ +++    +    + A 
Sbjct: 796  YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 855

Query: 152  YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
               N M++  +   +  +N ++  LCK K++  A  +F  M+ + I P+  TYS L+   
Sbjct: 856  NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 915

Query: 211  GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                    A  +  +M++   NPD+ T+  ++D   K G++ EA  +   M      P+ 
Sbjct: 916  CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 975

Query: 271  FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              YS L++ + + +R+++A   F  M       DV  YN LI  FCK  + +    V ++
Sbjct: 976  VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 1035

Query: 331  MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
            M+ +G+  N+ T NI++ GL   G+ D A  +F+ M+      +  TY  ++   C+ G+
Sbjct: 1036 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 1095

Query: 390  LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            LEKA  V++Y++  +  P+++T++++I G+C  G V D   L  ++  KG++P
Sbjct: 1096 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 1148



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 164/339 (48%), Gaps = 12/339 (3%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK------NVRKAQEIFDCMKDRFIPD 199
           K+ +A+  F+ M K     ++  FN LLSA+ K K      ++ K  E+     D +   
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY--- 224

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T++I++  +     +  A  I  +M+  G  PD VT G +V+  C+  RV +A+ +V 
Sbjct: 225 --TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 282

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     +P    Y+ ++ +     R+ DA D F E+E+ GI  +V  Y AL+   C ++
Sbjct: 283 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 342

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYT 378
           ++ +  R+L DM  K + PN  T + +L+  +  G+  EA  +F  M+++  + D  TY+
Sbjct: 343 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 402

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C    +++A +++  M  K  +  + +++ LING C    V D   L  +M ++
Sbjct: 403 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 462

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G+  +  T+  L +   + G  D  +    +M+     P
Sbjct: 463 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP 501



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            ++ T+  ++  +    +++EA   F  M       ++  +N L+   CK K V +  E+F
Sbjct: 974  SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 1033

Query: 190  DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
              M  R  + ++ TY+IL++G  +  +   A+EIF+EMV  G  P+I+TY  ++D LCK 
Sbjct: 1034 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 1093

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G++++A+ + + +  +   PT + Y++++       ++ED  D F  +   G+  DV  Y
Sbjct: 1094 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 1153

Query: 309  NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            N +I  FC+    +    + K+M   G  PNS   N ++   +  G+ + +  + + M +
Sbjct: 1154 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM-R 1212

Query: 369  LC--EADADTYTMMIKMFCQGGELEKAF 394
             C    DA T  ++  M    G L+K+F
Sbjct: 1213 SCGFAGDASTIGLVTNML-HDGRLDKSF 1239



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 193/436 (44%), Gaps = 55/436 (12%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y+++I    K ++ +    L   M  + ++ N  T+  +++ + +   V++A   F+
Sbjct: 433 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 492

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M  +G++ ++  +N LL  LC +  + KA  IF+ M+ R +  D  TY+ ++ G  K  
Sbjct: 493 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 552

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE--------------------- 253
            +  A  +F  +   G  PDIVTY  M+  LC  G + E                     
Sbjct: 553 KVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 612

Query: 254 -------------------ALGIVKSMDSTVCRP-----------TSFIYSVLVHTYGV- 282
                              A  ++K + S VC+            TS+ Y   +   G+ 
Sbjct: 613 DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLS 672

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           E +++DAV  F EM K+     +  ++ L+ A  K NKF  V  + + M + G+  N  T
Sbjct: 673 ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 732

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            +I++N    R +   A  V  +M+KL  E +  T + ++  +C    + +A  +   M 
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +  + P+  TF+ LI+GL      S++  L++ M+ KG +P   T+G +   L K G  D
Sbjct: 793 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 852

Query: 462 VLKFLQEKMNLLVKEP 477
           +   L  KM     EP
Sbjct: 853 LAFNLLNKMEQGKLEP 868



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 184/415 (44%), Gaps = 23/415 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           AF FFK  E++     +V  Y +++  L    ++     L++ M  K++  NV T+  ++
Sbjct: 312 AFDFFKEIERK-GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 370

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
             + +  KV EA   F  M +  +  ++  ++ L++ LC    + +A ++FD M  +  +
Sbjct: 371 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 430

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
            D  +Y+ L+ G+ K   +    ++FREM   G   + VTY  ++    +AG VD+A   
Sbjct: 431 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 490

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              MD     P  + Y++L+        +E A+  F +M+K  +  D+  Y  +I   CK
Sbjct: 491 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 550

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--------- 368
             K +  + +   ++ KG+ P+  T   +++GL  +G   E   ++ +M +         
Sbjct: 551 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 610

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS----------VLING 418
           L + D      +IK     G      K  K    K+ +  +  FS          +  NG
Sbjct: 611 LSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNG 670

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           L +  +  D+  L  +M++    PS   F KL   + K  + DV+  L E+M  L
Sbjct: 671 LSELKL-DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 724



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 1/269 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K R  P    +S LL    K         +  +M + G   +  TY I+++  C+  ++
Sbjct: 687 VKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQL 746

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL ++  M      P     S L++ Y    RI +AV    +M   G   +   +N L
Sbjct: 747 PLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTL 806

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I      NK      ++  M +KG  P+  T  +++NGL  RG+TD A+ +  +M +   
Sbjct: 807 IHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKL 866

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E     Y  +I   C+   ++ A  ++K M+ K   P++ T+S LI+ LC+ G  SD+  
Sbjct: 867 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 926

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL DMIE+ I P   TF  L    +KEG+
Sbjct: 927 LLSDMIERKINPDVFTFSALIDAFVKEGK 955



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 166/392 (42%), Gaps = 55/392 (14%)

Query: 123 MRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           M+ + M L++ T+  ++R   +  KVEEA   F  +   G+  ++  +  ++S LC    
Sbjct: 529 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 588

Query: 182 VRKAQEIFDCMKDR----------------------------FIPD----------SKTY 203
           + + + ++  MK                              + P            K  
Sbjct: 589 LHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL 648

Query: 204 SILLEGWGK---------------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           S+L    GK               +  L  A  +F EMV +   P I+ +  ++  + K 
Sbjct: 649 SLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM 708

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            + D  + + + M +       + YS+L++ +   +++  A+    +M K G   ++   
Sbjct: 709 NKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTL 768

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           ++L+  +C + +      ++  M   G  PN+ T N +++GL    +  EA  +  RM+ 
Sbjct: 769 SSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA 828

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K C+ D  TY +++   C+ G+ + AF +   M+  +  P +  ++ +I+GLC    + D
Sbjct: 829 KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 888

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +  L ++M  KGIRP+  T+  L   L   GR
Sbjct: 889 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 920



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +D  L  A ++F +MV +   P IV +  ++  + K  + D  + + K M+    R   +
Sbjct: 165 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 224

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++++++ +    ++  A+    +M K G   D     +L+  FC+ N+  +   ++  M
Sbjct: 225 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 284

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G  P                                  D   Y  +I   C+   + 
Sbjct: 285 VEIGYKP----------------------------------DIVAYNAIIDSLCKTKRVN 310

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AF  +K ++ K   P++ T++ L+NGLC+    SD+  LL DMI+K I P+  T+  L 
Sbjct: 311 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 370

Query: 452 KLLIKEGREDVLKFLQEKMNLLVKEP 477
              +K G+    K L E+M  +  +P
Sbjct: 371 DAFVKNGKVLEAKELFEEMVRMSIDP 396


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 225/470 (47%), Gaps = 57/470 (12%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           ++VLD  L +    V+  +V D L          F   K   K+QN   S++ Y+S++ +
Sbjct: 83  RLVLDQMLQEE---VASRMVHDAL----------FVLVKM--KEQNLRPSIQTYNSLLYN 127

Query: 107 LAKIRQYQIMWDLVN---------AMRTKRML---------------------------N 130
           L   R   IMWD+ N         + RT  ++                           +
Sbjct: 128 L---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPS 184

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V +F  IM +Y ++   + A   F +M KYG+  +  ++N L+  L  + ++ +A E+ +
Sbjct: 185 VVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTN 244

Query: 191 CM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKA 248
            M K    PD  TY I+ +G+     +  AREI ++M+ D G  PD+VTY +++   C+ 
Sbjct: 245 DMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQM 304

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++EAL + + + S+  +    +YSVL+ +     ++++A+    EME N +  D+  Y
Sbjct: 305 GNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTY 364

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + LI   CK  K +   ++ K+M    + PNS   + IL GL  +G   +A   F  +I 
Sbjct: 365 SILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIM 424

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D   Y +MI  + + G++E+A +++K ++ K   PS+ TF+ LI G C    V +
Sbjct: 425 SNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVE 484

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +  LLE +   G+ PS  T+  L     +EG  + L  L  +MNL   EP
Sbjct: 485 ARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEP 534



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 181/400 (45%), Gaps = 52/400 (13%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAV 151
           ++ +V  Y  ++ SL K  Q      L+  M    +  ++ T+ I++    +  KV++A+
Sbjct: 322 FQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAI 381

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
             +  M    +  N  A +G+L  LC+   +  A+  FD +      PD   Y+I+++G+
Sbjct: 382 QLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGY 441

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K  ++  A  +++ + D    P IVT+  ++   CK  +V EA  +++S+      P++
Sbjct: 442 VKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSA 501

Query: 271 FIYSVLVHTYGVENRI-----------------------------------EDAVDTFLE 295
             Y+ L++ Y  E  I                                   E++V    +
Sbjct: 502 VTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLED 561

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G+  D   YN +I  FCKA   +  + +L DM    + P   T N++++GL   G+
Sbjct: 562 MRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGD 621

Query: 356 TDEAYRVF----RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            ++A RV      R I L +     YT MIK  C  G+ ++A KV+  M  K F  S+  
Sbjct: 622 VEDADRVLVSLQDRNINLTKV---AYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKD 678

Query: 412 FSVLINGLCDKGIVSDS----CVLLEDMIEKGIRPSGETF 447
           +S +IN LC + +++++    C++L D    G+ P  E F
Sbjct: 679 YSAVINRLCKRCLINEAKYYFCIMLSD----GVSPDQEIF 714



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 180/393 (45%), Gaps = 49/393 (12%)

Query: 116 MWDLVNAMRTKR-------MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           M ++  A+R +R        LNV  + +++    +  +V+EA+     M+   +  +L  
Sbjct: 304 MGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVT 363

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           ++ L+  LCK   V++A +++  M  +R  P+S  +S +L+G  +   L  AR  F  ++
Sbjct: 364 YSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLI 423

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
            +   PD+  Y IM+D   K G V+EA+ + K +      P+   ++ L++ +    ++ 
Sbjct: 424 MSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVV 483

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A      ++ +G+      Y  L+ A+C+      ++ +L +MN K + P   T  +++
Sbjct: 484 EARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVI 543

Query: 348 NGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
            GL  + + +E+ ++   M  K    D  TY  +I+ FC+  ++ KAF++   M +    
Sbjct: 544 KGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLE 603

Query: 407 PSMHTFSVLINGLCDKGIVSDS--------------------------CV---------L 431
           P+  T++VLI+GLC  G V D+                          CV         +
Sbjct: 604 PTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKV 663

Query: 432 LEDMIEKGIRPSGETFGKL-----RKLLIKEGR 459
              M+EKG   S + +  +     ++ LI E +
Sbjct: 664 FHQMVEKGFEVSIKDYSAVINRLCKRCLINEAK 696



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 109/241 (45%), Gaps = 7/241 (2%)

Query: 133 TFCIIMRKY---ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           T+  +M  Y     + K+ E +   N+     +   +  +  ++  LCK + + ++ ++ 
Sbjct: 503 TYTTLMNAYCEEGNINKLHELLLEMNLKD---IEPTVVTYTVVIKGLCKQRKLEESVQLL 559

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+ +   PD  TY+ +++ + K  ++ +A E+  +M+     P   TY +++D LC+ 
Sbjct: 560 EDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRY 619

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V++A  ++ S+       T   Y+ ++  + V+   + AV  F +M + G    +  Y
Sbjct: 620 GDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDY 679

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           +A+I   CK             M S GV+P+     ++LN     G     + +   MIK
Sbjct: 680 SAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIK 739

Query: 369 L 369
            
Sbjct: 740 F 740



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 101/216 (46%), Gaps = 2/216 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEE 149
           ++ E +V  Y  +I+ L K R+ +    L+  MR K +   + T+  I++ + + + + +
Sbjct: 530 KDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRK 589

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLE 208
           A    + M  + +    A +N L+  LC+  +V  A  +   ++DR I  +K  Y+ +++
Sbjct: 590 AFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIK 649

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
                 +  RA ++F +MV+ G    I  Y  +++ LCK   ++EA      M S    P
Sbjct: 650 AHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSP 709

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
              I+ ++++ +     +    +    M K G+L D
Sbjct: 710 DQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 193/369 (52%), Gaps = 7/369 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           AY+++I  L K    +  + L+  M +K     N+ T+  I+    R+ KV EA   F+ 
Sbjct: 82  AYNALINGLCKDENIERAYKLLEEMASKGYEPDNI-TYNTILSGLCRMGKVSEAKQFFDS 140

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--DRFI-PDSKTYSILLEGWGKD 213
           M   G + ++ A+NGLL AL K   V +A  +F  M   DR + PD  TY+ L++G+ + 
Sbjct: 141 MPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRV 200

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A ++F++++  G  PD VTY  ++  L +   +DEA  + K M  + C P    Y
Sbjct: 201 EKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATY 260

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+++  +     +   ++ + EM +     DV + NA+I   CKA K  + ++VL++M+ 
Sbjct: 261 SIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSK 320

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G  P+  T NI+L+GL      D+A+ +F  M+   C  D  +Y++++   C+  ++  
Sbjct: 321 IGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHD 380

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++  M  ++ +P + TF++L++GLC  G + ++  LL+ M E  + P G T   L  
Sbjct: 381 ARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMH 440

Query: 453 LLIKEGRED 461
            L ++ R D
Sbjct: 441 GLCRDKRTD 449



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 199/422 (47%), Gaps = 40/422 (9%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++ +E  V  Y ++I  L K  +     ++V  M  K +  +V T+ II+ +  R  KV+
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVD 62

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           EA   F+ M + G + N  A+N L++ LCK +N+ +A ++ + M  + + PD+ TY+ +L
Sbjct: 63  EADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTIL 122

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD--STV 265
            G  +   +  A++ F  M   G +PD+V Y  ++D L K G+V EA G+ K+MD     
Sbjct: 123 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK 182

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P    Y+ L+  +    + ++A+  F ++   G + D   YN+++    + +      
Sbjct: 183 VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 242

Query: 326 RVLKDMNSKGVAPNSRT-----------------------------------CNIILNGL 350
            + K M   G APN  T                                   CN +++ L
Sbjct: 243 EMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDML 302

Query: 351 IGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
               + D+A++V   M K+    D  TY +++   C+   ++KA +++  M      P +
Sbjct: 303 CKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 362

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            ++SV++NGLC    V D+ VL + MIE+ + P   TF  L   L K G+ D  K L + 
Sbjct: 363 VSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDV 422

Query: 470 MN 471
           M+
Sbjct: 423 MS 424



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 186/413 (45%), Gaps = 42/413 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT---KRMLNVETFCIIMRKYARVQK 146
            + Y   V AY+ ++++L K  +    W L   M     K   ++ T+  ++  + RV+K
Sbjct: 143 SRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEK 202

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSI 205
            +EA+  F  +   G   +   +N +L  L +  N+ +A+E+F  M D    P+  TYSI
Sbjct: 203 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSI 262

Query: 206 LLEGWGKDPNLPRAREIFREMVD-----------------------------------TG 230
           +L G  +  N+ R  E++ EM +                                    G
Sbjct: 263 VLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG 322

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+VTY I++D LCK   VD+A  +  +M    C P    YSV+++     N++ DA 
Sbjct: 323 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR 382

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F  M +  ++ DV  +N L+   CKA K      +L  M+   V P+  TC  +++GL
Sbjct: 383 VLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGL 442

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM--KLKRFIP 407
                TDEA R+F+ M+ K   AD   + +++   C+ G+L +A   +K M      F P
Sbjct: 443 CRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSP 502

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
            + T++ L+N L + G V  +    + M   G  P    +  L   L K+GR 
Sbjct: 503 DVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRH 555



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M + G  PD+VTY  ++  LCK G+V EAL +V+ M      P    Y+++V       +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +++A + F +M + G  A+   YNALI   CK    +  Y++L++M SKG  P++ T N 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 346 ILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-- 402
           IL+GL   G+  EA + F  M  +    D   Y  ++    + G++ +A+ ++K M +  
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           ++  P + T++ LI+G C      ++  L +D+I KG  P   T+  +   L ++   D 
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 463 LKFLQEKM 470
            + + +KM
Sbjct: 241 AEEMFKKM 248



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 4/212 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           + +Y  ++  L K  +      L + M  ++++ +V TF I+M    +  K++EA    +
Sbjct: 362 IVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLD 421

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
           VM ++ V  +      L+  LC+ K   +A  +F  M ++  + D   ++I+L G  ++ 
Sbjct: 422 VMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREG 481

Query: 215 NLPRAREIFREMV--DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
            L +A   F+ MV  D   +PD+VTY  +V+ L +AGRVD+A+   + M  + C P    
Sbjct: 482 KLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVA 541

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           Y+ L++    + R   A      M++ G L+D
Sbjct: 542 YNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 187/392 (47%), Gaps = 4/392 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +  Y      Y  +I  L K+  +   + L++ MR KR       +  I+    ++ +VE
Sbjct: 38  EAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVE 97

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA      M +Y     L  +  ++  LCK+K +  A    + M  R I PD+  Y+ +L
Sbjct: 98  EARELIEKMARYAPPDALT-YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVL 156

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  ++  +  AR +F +MV    NP++VTY  +++ LCKA R++ A  + K M      
Sbjct: 157 SGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV 216

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           PT   Y+ L+  +  +  +  A D F +M ++  + +V  Y  LI    K+ K +    V
Sbjct: 217 PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEV 276

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQ 386
           L  M  KGV PN  T + +++G       DEA+++  +M+    A    TY +++   C+
Sbjct: 277 LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 336

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             +LE AFK+++ M  +R  P++ T++ L+  LC    +  +  L  +MI KG  P   T
Sbjct: 337 ADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAIT 396

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           +  L   L + G+    + L EKM L  + P 
Sbjct: 397 YDTLAWGLTRAGKVHEAQELMEKMKLTKRNPF 428



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 136/266 (51%), Gaps = 2/266 (0%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R IP + T++ + +G+ K   L + +E+++ MV+ G       YGI++  LCK G  DEA
Sbjct: 5   RVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEA 64

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++ +M     +  +  YS +++     NR+E+A +   +M +     D   Y  ++  
Sbjct: 65  YKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIVER 123

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
            CK  +  +    +++M ++G+ P++   N +L+GL    + +EA  +F +M+K     +
Sbjct: 124 LCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPN 183

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY  +I   C+   +E A++++K M  K ++P+  +++ LI+G C K  +  +  + +
Sbjct: 184 VVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFD 243

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR 459
            M+     P+  T+  L   L K G+
Sbjct: 244 KMVRSNCVPNVVTYTTLIDGLSKSGK 269


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 196/418 (46%), Gaps = 8/418 (1%)

Query: 49  VLDTALDQSGIRVSPEIVE--DVLEKFRNAGTLA-FCFFKWAEKQQNYEHSVRAYHSMIE 105
           +L T + +SG   SP +V    V+  F   G ++  C       QQ     V  Y S I+
Sbjct: 212 LLHTMVKKSG-GCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYID 270

Query: 106 SLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           +L K R       ++  M +     +  T+  ++  Y+ + + +E    F  M + G+  
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMP 330

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF 223
           ++   N  +S+LCK    ++A E FD M  +   PD  TYS+LL G+  +  +     +F
Sbjct: 331 DIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLF 390

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             M   G   D   Y I++D   K G +DEA+ I   M      P ++ Y  ++  +   
Sbjct: 391 NSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRM 450

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRT 342
            R+ DA+D F +M   G+  D  +YN+LI  FC          ++ +M S+G+  PN+  
Sbjct: 451 GRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVF 510

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N I+N L   G   EA  +F  +I + E  D  T+  +I  +   G++EKAF V   M 
Sbjct: 511 FNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMI 570

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
                P + T+S L++G C  G + D  +L  +M+ KG++P+  T+G +   L  +GR
Sbjct: 571 SVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGR 628



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 156/320 (48%), Gaps = 5/320 (1%)

Query: 136 IIMRKYARVQKVEEAVYTF-NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
           I+++     ++ ++AV    + M + GV  +  +++ +L +LC+    ++A ++   M  
Sbjct: 159 ILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVK 218

Query: 195 RF---IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +     P+  +Y+ ++ G+ ++  + +A  +F EM+  G  PD+VTY   +D LCKA  +
Sbjct: 219 KSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAM 278

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+A  +++ M S    P    Y+ ++H Y +  + ++    F EM + G++ D+   N+ 
Sbjct: 279 DKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSY 338

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           + + CK  K K        M +KG  P+  T +++L+G    G   +   +F  M     
Sbjct: 339 MSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGI 398

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            AD   Y ++I  + + G +++A  ++  M+ +  +P   T+  +I      G ++D+  
Sbjct: 399 VADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMD 458

Query: 431 LLEDMIEKGIRPSGETFGKL 450
               MI  G++P    +  L
Sbjct: 459 KFNQMIAMGLKPDTIVYNSL 478



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 14/334 (4%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ FC+    +  + K +E +   + M   G+ + N   FN ++++LCK   V +AQ+IF
Sbjct: 479 IQGFCM----HGNLVKAKELI---SEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIF 531

Query: 190 DC---MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           D    + +R  PD  T++ L++G+G    + +A  +   M+  G  PD+VTY  ++D  C
Sbjct: 532 DLVIHIGER--PDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYC 589

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + GR+D+ L + + M S   +PT+  Y +++H    + R   A     EM ++G   D++
Sbjct: 590 RNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIS 649

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
               ++G  C+ N       + K + +  V  N    N +++ +    + +EA  +F  +
Sbjct: 650 TCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSI 709

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                  +A TY +MI    + G +E+A  ++  M+     PS    + +I  L +KG +
Sbjct: 710 SATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEI 769

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           S +   L  +  K I     T   +  L  ++G+
Sbjct: 770 SKAGNYLSKVDGKTISLEASTASLMLSLFSRKGK 803



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 151/383 (39%), Gaps = 54/383 (14%)

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK---SKNVRKAQEIFDCMKDR 195
           R  A     E+  + F+ + +        A NG L+AL +   S   R    +   + +R
Sbjct: 45  RVRAGTLSTEDTHHLFDELLRQTTPVPERALNGFLTALARAPSSATCRDGPSLAVALFNR 104

Query: 196 F----------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
                      +P   TY+IL++   +         +F   + TG   D++   I++  L
Sbjct: 105 ICREEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCL 164

Query: 246 CKAGRVDEALGIV------------------------------KSMD--------STVCR 267
           C A R D+A+ ++                              +++D        S  C 
Sbjct: 165 CHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCS 224

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ ++H +  E  +  A + F EM + G++ DV  Y++ I A CKA        V
Sbjct: 225 PNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELV 284

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           L+ M S G  P+  T N +++G    G+  E   +FR M +     D  T    +   C+
Sbjct: 285 LRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCK 344

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+ ++A + +  M  K   P + T+SVL++G   +G V D   L   M   GI      
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSV 404

Query: 447 FGKLRKLLIKEGRED--VLKFLQ 467
           +  L     K G  D  +L F Q
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQ 427



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 145/353 (41%), Gaps = 86/353 (24%)

Query: 100 YHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           ++S+I SL K   + + Q ++DLV  +      +V TF  ++  Y  V K+E+A    + 
Sbjct: 511 FNSIINSLCKEGRVVEAQDIFDLV--IHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDA 568

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G+  ++  ++ LL   C++  +     +F  M  + + P + TY I+L G   D  
Sbjct: 569 MISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGR 628

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK---------------- 259
              A+++  EM+++G   DI T GI++  LC+    DEA+ + K                
Sbjct: 629 TVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINT 688

Query: 260 -------------------SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
                              S+ +T   P +  Y V++     E  +E+A + F  MEK+ 
Sbjct: 689 MIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKS- 747

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
                                             G AP+SR  N I+  L+ +GE  +A 
Sbjct: 748 ----------------------------------GCAPSSRLLNNIIRVLLEKGEISKAG 773

Query: 361 RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
               ++  K    +A T ++M+ +F + G         KY +  + +P+M+ F
Sbjct: 774 NYLSKVDGKTISLEASTASLMLSLFSRKG---------KYREQIKSLPAMYQF 817


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 178/349 (51%), Gaps = 6/349 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++  Y +  ++++A     V+++  V  ++  +N +L +LC S  +++A E+ 
Sbjct: 175 DVITYNVLIGGYCKSGEIDKA---LEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVL 231

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D    R   PD  TY+IL+E    D  + +A ++  EM   GC PD+VTY ++++ +CK 
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 291

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA+  + +M S  C+P    +++++ +     R  DA     +M + G    V  +
Sbjct: 292 GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTF 351

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI   C+         VL+ M   G  PNS + N +L+G     + D A      M+ 
Sbjct: 352 NILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 411

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  D  TY  ++   C+ G+++ A ++   +  K   P + T++ +I+GL   G    
Sbjct: 412 RGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY 471

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMNLLVK 475
           +  LLE+M  KG++P   T+  L + L +EG+ D  +K   +   L +K
Sbjct: 472 AVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIK 520



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 156/328 (47%), Gaps = 5/328 (1%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I +RK  R  ++EE +     M   G   ++ A   L+   C+S   +KA  I + +++ 
Sbjct: 111 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENS 170

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             +PD  TY++L+ G+ K   + +A E+   M      PD+VTY  ++  LC +G++ EA
Sbjct: 171 GAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEA 227

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + ++       C P    Y++L+     ++ +  A+    EM K G   DV  YN LI  
Sbjct: 228 MEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLING 287

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
            CK  +     + L +M S G  PN  T NIIL  +   G   +A R+   M+ K C   
Sbjct: 288 ICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPS 347

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             T+ ++I   C+   L +A  V + M     +P+  +++ L++G C +  +  +   LE
Sbjct: 348 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLE 407

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGRED 461
            M+ +G  P   T+  L   L K+G+ D
Sbjct: 408 IMVSRGCYPDIVTYNTLLTALCKDGKVD 435



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 162/320 (50%), Gaps = 2/320 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++        V +A+   + M+K G   ++  +N L++ +CK   + +A +  
Sbjct: 242 DVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFL 301

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M      P+  T++I+L           A  +  +M+  GC+P +VT+ I+++ LC+ 
Sbjct: 302 NNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRK 361

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +  A+ +++ M    C P S  Y+ L+H +  E +++ A++    M   G   D+  Y
Sbjct: 362 RLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTY 421

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N L+ A CK  K      +L  ++SKG +P   T N +++GL   G+T+ A  +   M  
Sbjct: 422 NTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRR 481

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  + D  TY+ +++   + G++++A K++  M+     PS  T++ ++ GLC     S 
Sbjct: 482 KGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSR 541

Query: 428 SCVLLEDMIEKGIRPSGETF 447
           +   L  M+EKG +P+  T+
Sbjct: 542 AIDFLAYMVEKGCKPTEATY 561



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 2/255 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  II+R      +  +A    + M + G + ++  FN L++ LC+ + + +A ++ 
Sbjct: 312 NVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVL 371

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K   +P+S +Y+ LL G+ ++  + RA E    MV  GC PDIVTY  ++  LCK 
Sbjct: 372 EKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 431

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+VD A+ I+  + S  C P    Y+ ++       + E AV+   EM + G+  D+  Y
Sbjct: 432 GKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITY 491

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + L+    +  K     ++  DM    + P++ T N I+ GL    +T  A      M+ 
Sbjct: 492 STLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVE 551

Query: 368 KLCEADADTYTMMIK 382
           K C+    TYT++I+
Sbjct: 552 KGCKPTEATYTILIE 566



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 125/275 (45%), Gaps = 10/275 (3%)

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +I L    ++  L    +    M+  G  PD++    ++   C++G+  +A  I++ +++
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
           +   P    Y+VL+  Y     I+ A++    +E+  +  DV  YN ++ + C + K K 
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEV---LERMSVAPDVVTYNTILRSLCDSGKLKE 226

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
              VL     +   P+  T  I++          +A ++   M K  C+ D  TY ++I 
Sbjct: 227 AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 286

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+ G L++A K    M      P++ T ++++  +C  G   D+  LL DM+ KG  P
Sbjct: 287 GICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSP 346

Query: 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           S  TF  L   L ++      + L   +++L K P
Sbjct: 347 SVVTFNILINFLCRK------RLLGRAIDVLEKMP 375



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           SV  ++ +I  L + R      D++  M     + N  ++  ++  + + +K++ A+   
Sbjct: 347 SVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYL 406

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            +M   G   ++  +N LL+ALCK   V  A EI + +  +   P   TY+ +++G  K 
Sbjct: 407 EIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKV 466

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A E+  EM   G  PDI+TY  ++  L + G+VDEA+ I   M+    +P++  Y
Sbjct: 467 GKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTY 526

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           + ++       +   A+D    M + G     A Y  LI
Sbjct: 527 NAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 182/366 (49%), Gaps = 4/366 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  ++ +I++L +  Q +    L+  M    +L  E TF  IM+ +     ++ A+    
Sbjct: 195 VSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKE 254

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKD 213
            M + G        N L++  CK   + +A    + M  R  F PD  T+++L+ G  K 
Sbjct: 255 QMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKT 314

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            ++  A E+   M+  G +PDI TY  ++  LCK G VDEA+ ++  M    C P +  Y
Sbjct: 315 GHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTY 374

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ T   EN++E+A    L +   GIL DV  YN+LI   C +        + K+M +
Sbjct: 375 NTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKT 434

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           KG  P+  T N++++ L  RG+  EA  + + M +  C  +  TY  +I  FC+   + +
Sbjct: 435 KGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAE 494

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M+L+    +  T++ LI+GLC    V ++  L++ MI +G+RP   T+  L  
Sbjct: 495 AEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLT 554

Query: 453 LLIKEG 458
              K G
Sbjct: 555 YFCKAG 560



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 177/352 (50%), Gaps = 3/352 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++ ++  L+K    +   ++++ M R     ++ T+  ++    ++ +V+EAV   N M
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
            +   + N   +N ++S LCK   V +A ++   +  +  +PD  TY+ L++G     N 
Sbjct: 363 IERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+++EM   GC+PD  TY +++D LC  G++ EAL ++K M+ + C      Y+ L
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    RI +A + F +ME  G+  +   YN LI   CK+ + +   +++  M  +G+
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T N +L      G+  +A  + + M    CE D  TY  +I   C+ G +E A K
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + + +++K    + H ++ +I  L  +    ++  L  +MIEK   P   T+
Sbjct: 603 LLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTY 654



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 164/329 (49%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF +++   ++   V+ A+   ++M + G   ++  +N L+S LCK   V +A ++ + M
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +R   P++ TY+ ++    K+  +  A ++   +   G  PD+ TY  ++  LC +   
Sbjct: 363 IERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A+ + K M +  C P  F Y++L+ +     ++++A++   EME +G   +V  YN L
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FCK  +      +   M  +GV+ NS T N +++GL      +EA ++  +MI +  
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY  ++  FC+ G+++KA  + + M      P + T+  LI GLC  G V  +  
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL  +  KGI  +   +  + + L +  R
Sbjct: 603 LLRTIQMKGINLTPHAYNPVIQALFRRKR 631



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 177/389 (45%), Gaps = 39/389 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           ++ ++  +  Y+S+I  L K+ +      ++N M  +    N  T+  I+    +  +VE
Sbjct: 329 REGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVE 388

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKDRF----IP 198
           EA     V+   G+  ++  +N L+  LC S+N   A E++       C  D F    + 
Sbjct: 389 EATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLI 448

Query: 199 DSK--------------------------TYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           DS                           TY+ L++G+ K+  +  A EIF +M   G +
Sbjct: 449 DSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVS 508

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
            + VTY  ++D LCK+ RV+EA  ++  M     RP  F Y+ L+  +     I+ A D 
Sbjct: 509 RNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADI 568

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M  +G   D+  Y  LI   CKA + +   ++L+ +  KG+       N ++  L  
Sbjct: 569 VQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFR 628

Query: 353 RGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMH 410
           R  + EA R+FR MI+  EA DA TY ++ +  CQGG  + +A      M  + ++P   
Sbjct: 629 RKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFS 688

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +F +L  GL    +V     L++ ++EK 
Sbjct: 689 SFYMLAEGLFSLAMVGTLIKLIDMVMEKA 717



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 208/460 (45%), Gaps = 45/460 (9%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVVLD--TALDQSGIRVSPEIVE-DVLEKFRNA- 76
           +Y++  P    L + K  S   LS      +  T    S  R+SP      +L   R   
Sbjct: 8   KYHTWFPFHHHLASHKPTSNSTLSFATTNHEPLTTTTNSATRLSPNFTPTQLLHSLRREE 67

Query: 77  -GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETF 134
             +     F WA KQ N++ S   +  ++  L K  ++  M D++  M+    +++ ++ 
Sbjct: 68  DSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSL 127

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQ-KYGVTQN---------------------------- 165
            + +  YA      E +   + M+ ++GV  N                            
Sbjct: 128 LVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMV 187

Query: 166 -------LAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
                  ++ FN L+ ALC++  +R A  + + M+D   +PD KT++ +++G+ ++ NL 
Sbjct: 188 SRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLD 247

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVL 276
            A  +  +MV+ GC    VT  ++V+  CK GR++EAL  ++ M       P  + +++L
Sbjct: 248 GAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNML 307

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V+       ++ A++    M + G   D+  YN+LI   CK  +     +VL  M  +  
Sbjct: 308 VNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDC 367

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           +PN+ T N I++ L    + +EA ++   +  K    D  TY  +I+  C       A +
Sbjct: 368 SPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAME 427

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           ++K MK K   P   T+++LI+ LC +G + ++  LL++M
Sbjct: 428 LYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEM 467



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 55/274 (20%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           DS     L     K PN   +  IF+E++                 L KAG  D    I+
Sbjct: 68  DSSAVIHLFYWASKQPNFKPSSSIFKEVLHK---------------LGKAGEFDAMKDIL 112

Query: 259 KSMD---STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           K M    S +   +  ++     ++G+ N I   VD  +E+E  G++A+   YN L+   
Sbjct: 113 KEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDA-MEVE-FGVVANTHFYNFLLNVL 170

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
              NK K V     +M S+G+ P                                  D  
Sbjct: 171 VDGNKLKLVEIAHSNMVSRGIRP----------------------------------DVS 196

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+ ++IK  C+  ++  A  + + M+    +P   TF+ ++ G  ++G +  +  + E M
Sbjct: 197 TFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQM 256

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +E G   +  T   L     KEGR E+ L+F++E
Sbjct: 257 VEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEE 290


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 181/358 (50%), Gaps = 3/358 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK+ ++ ++  L   M+   +  N+ T+ I++  + R  ++  A+   
Sbjct: 80  SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVL 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   N LL+  C    +  A  +   M +  + PDS T++ L+ G  + 
Sbjct: 140 AKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRH 199

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+VTYGI+V+ LCK G +D AL ++K M+     P   IY
Sbjct: 200 NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIY 259

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        + DA++ F EM+  GI  +V  YN+LI   C   ++ +  R+L DM  
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  +  G+  EA +++  MIK   + D  TY+ +I  FC    L++
Sbjct: 320 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 379

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  +++ M  K   P++ T++ LI G C    V +   L  +M ++G+  +  T+  L
Sbjct: 380 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 180/363 (49%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  L K     +   L+  M   ++   V  +  I+      + V +A+  F  M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              G+  N+  +N L+  LC       A  +   M +R I P+  T+S L++ + K+  L
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +++ EM+    +PDI TY  +++  C   R+DEA  + + M S  C P    Y+ L
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+++ ++ F EM + G++ +   Y  LI  F +A +  N   V K M S GV
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T +I+L+GL   G+ + A  VF  + +   E D  TY +MI+  C+ G++E  + 
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P++ T++ +++G C KG+  ++  L  +M E+G  P   T+  L +  +
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582

Query: 456 KEG 458
           ++G
Sbjct: 583 RDG 585



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 193/399 (48%), Gaps = 15/399 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           +  Y+     ++++I  L +  +      LV+ M  K    ++ T+ I++    +   ++
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+     M++  +   +  +N ++ ALC  KNV  A  +F  M ++ I P+  TY+ L+
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
                      A  +  +M++   NP++VT+  ++D   K G++ EA  +   M      
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F YS L++ + + +R+++A   F  M       +V  YN LI  FCKA +      +
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
            ++M+ +G+  N+ T   +++G     E D A  VF++M+      D  TY++++   C 
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCN 478

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G++E A  V++Y++  +  P ++T++++I G+C  G V D   L   +  KG++P+  T
Sbjct: 479 NGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVT 538

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKE-----PLCD 480
           +  +     ++G       L+E+ + L +E     PL D
Sbjct: 539 YTTMMSGFCRKG-------LKEEADALFREMKEEGPLPD 570



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 182/386 (47%), Gaps = 5/386 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCII 137
           LA    K  E Q   E  V  Y+++I++L   +      +L   M  K +  NV T+  +
Sbjct: 239 LALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +R      +  +A    + M +  +  N+  F+ L+ A  K   + +A++++D M  R I
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD  TYS L+ G+     L  A+ +F  M+   C P++VTY  ++   CKA RVDE + 
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           + + M        +  Y+ L+H +      ++A   F +M  +G+L D+  Y+ L+   C
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLC 477

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
              K +    V + +    + P+  T NI++ G+   G+ ++ + +F  + +K  + +  
Sbjct: 478 NNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV 537

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TYT M+  FC+ G  E+A  +++ MK +  +P   T++ LI      G  + S  L+ +M
Sbjct: 538 TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
                     T G +  +L  +GR D
Sbjct: 598 RSCRFVGDASTIGLVTNML-HDGRLD 622



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 170/359 (47%), Gaps = 25/359 (6%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWAEK--------QQNYEHSVRAY 100
           L T +D  GIR  P +V        N+     C + +W++         ++    +V  +
Sbjct: 278 LFTEMDNKGIR--PNVVT------YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVMQ 158
            ++I++  K  +      L + M  KR ++ +  T+  ++  +    +++EA + F +M 
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 388

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
                 N+  +N L+   CK+K V +  E+F  M  R  + ++ TY+ L+ G+ +     
Sbjct: 389 SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECD 448

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+ +F++MV  G  PDI+TY I++D LC  G+V+ AL + + +  +   P  + Y++++
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMI 508

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  ++ED  D F  +   G+  +V  Y  ++  FC+    +    + ++M  +G  
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPL 568

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAF 394
           P+S T N ++   +  G+   +  + R M + C    DA T  ++  M    G L+K+F
Sbjct: 569 PDSGTYNTLIRAHLRDGDKAASAELIREM-RSCRFVGDASTIGLVTNML-HDGRLDKSF 625



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 123/248 (49%), Gaps = 1/248 (0%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           D  L  A  +F +MV +   P IV +  ++  + K  + D  + + + M +       + 
Sbjct: 59  DLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 118

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS+L++ +   +++  A+    +M K G   D+   N+L+  FC  N+  +   ++  M 
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELE 391
             G  P+S T N +++GL       EA  +  RM +K C+ D  TY +++   C+ G+++
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  + K M+  +  P +  ++ +I+ LC+   V+D+  L  +M  KGIRP+  T+  L 
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 452 KLLIKEGR 459
           + L   GR
Sbjct: 299 RCLCNYGR 306



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 125/271 (46%), Gaps = 1/271 (0%)

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           D +K R  P    +S LL    K         +  +M + G + ++ TY I+++  C+  
Sbjct: 71  DMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRS 130

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           ++  AL ++  M      P     + L++ +   NRI DAV    +M + G   D   +N
Sbjct: 131 QLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFN 190

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
            LI    + N+      ++  M  KG  P+  T  I++NGL  RG+ D A  + ++M + 
Sbjct: 191 TLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG 250

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E     Y  +I   C    +  A  ++  M  K   P++ T++ LI  LC+ G  SD+
Sbjct: 251 KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDA 310

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             LL DMIE+ I P+  TF  L    +KEG+
Sbjct: 311 SRLLSDMIERKINPNVVTFSALIDAFVKEGK 341



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 1/194 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++DAV+ F +M K+     +  ++ L+ A  K NKF  V  + + M + G++ N  T +
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I++N    R +   A  V  +M+KL  E D  T   ++  FC G  +  A  +   M   
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ LI+GL      S++  L++ M+ KG +P   T+G +   L K G  D+ 
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 464 KFLQEKMNLLVKEP 477
             L +KM     EP
Sbjct: 241 LSLLKKMEQGKIEP 254


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 176/338 (52%), Gaps = 2/338 (0%)

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           R   + NV T+  ++  Y ++++ +EA      M   G+  NL  FN +++ LC+   ++
Sbjct: 11  RNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLK 70

Query: 184 KAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +  E+   M  + ++PD  TY+ L+ G+ K+ N  +A  +  EMV  G +P++VTY  ++
Sbjct: 71  ETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLI 130

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + +CKAG ++ A+     M      P    Y+ +++ +  +  +++A     EM ++G +
Sbjct: 131 NSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFI 190

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
             +  YNALI   C   + +    +L+DM  KGV P+  + + I++G     E D A+++
Sbjct: 191 PSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQM 250

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              MI K    DA TY+ +I+  C+   L +A  +++ M   +  P   T++ LIN  C 
Sbjct: 251 KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCK 310

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +G ++ +  L ++MI+KG  P   T+  L   L K+ R
Sbjct: 311 EGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQAR 348



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F+EM   GC P++VTY  M+D  CK  R DEA G ++SM      P    ++++++    
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           + R+++  +  +EM + G + D   YN L+  +CK   F     +  +M   G++PN  T
Sbjct: 66  DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVT 125

Query: 343 CNIILNGLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
              ++N +   G  + A   F +M    LC  +  TYT +I  F Q G L++A++V   M
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLC-PNERTYTTIINGFAQQGLLDEAYRVLNEM 184

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
               FIPS+ T++ LING C  G + ++  LL+DM+ KG+ P
Sbjct: 185 TRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLP 226



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 170/383 (44%), Gaps = 52/383 (13%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y +     +A+     M + G++ N+  +  L++++CK+ N+ +A E FD M
Sbjct: 90  TYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQM 149

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R   P+ +TY+ ++ G+ +   L  A  +  EM  +G  P IVTY  +++  C  GR+
Sbjct: 150 HVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRM 209

Query: 252 DEALGIVKSM-----------DSTVCR------------------------PTSFIYSVL 276
           +EA+G+++ M            ST+                          P +  YS L
Sbjct: 210 EEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSL 269

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     + R+ +A D F EM    +  D   Y  LI A+CK         +  +M  KG 
Sbjct: 270 IQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGF 329

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI----------------KLCEADADTYTMM 380
            P++ T N+++NGL  +  + EA R+  ++                   C  +  +   +
Sbjct: 330 LPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVAL 389

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +K FC  G +++A +V++ M  K   P+   ++V+I+G C  G V  +  L ++M+    
Sbjct: 390 VKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDF 449

Query: 441 RPSGETFGKLRKLLIKEGREDVL 463
            P   T   L K L  EG +  L
Sbjct: 450 VPHTVTVLALVKALFTEGMDGEL 472



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 183/397 (46%), Gaps = 26/397 (6%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y S+I S+ K        +  + M  + +  N  T+  I+  +A+   ++EA    
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVL 181

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
           N M + G   ++  +N L++  C    + +A  +  D +    +PD  +YS ++ G+ ++
Sbjct: 182 NEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARN 241

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L RA ++  EM+     PD VTY  ++  LC+  R+ EA  + + M +    P  F Y
Sbjct: 242 QELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTY 301

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y  E  +  A+    EM + G L D   YN LI    K  + K   R+L  +  
Sbjct: 302 TTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFY 361

Query: 334 KGVAPNSRT--------CNI-------ILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
               P++ T        CNI       ++ G   +G  DEA +VF  MI K  + +   Y
Sbjct: 362 DDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIY 421

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I   C+ G + KA+K++K M    F+P   T   L+  L  +G+  +    L ++I 
Sbjct: 422 NVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGE----LNEVIG 477

Query: 438 KGIRPSGETFGKLRKLLI----KEGREDVLKFLQEKM 470
             +R    T  +L K+L+    KEG  D++  L  +M
Sbjct: 478 DILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEM 514



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 2/217 (0%)

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
            L   K M+   C P    Y+ ++  Y    R ++A      M   G+  ++  +N +I 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEA 372
             C+  + K    VL +M+ KG  P+  T N ++NG    G   +A  +   M++     
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  TYT +I   C+ G L +A + +  M ++   P+  T++ +ING   +G++ ++  +L
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVL 181

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +M   G  PS  T+  L       GR E+ +  LQ+
Sbjct: 182 NEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQD 218



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 11/142 (7%)

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+   C    + +A ++F+ M ++   P+   Y++++ G  +  N+ +A ++++EMV  
Sbjct: 388 ALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHV 447

Query: 230 GCNPDIVTYGIMVDVLCKA---GRVDEALG-IVKSMDSTVCRPT-SFIYSVLVHTYGVEN 284
              P  VT   +V  L      G ++E +G I++S     C+ T + +  VLV     E 
Sbjct: 448 DFVPHTVTVLALVKALFTEGMDGELNEVIGDILRS-----CKLTDAELSKVLVEINQKEG 502

Query: 285 RIEDAVDTFLEMEKNGILADVA 306
            ++   +   EM K+G++    
Sbjct: 503 NMDMVFNLLTEMAKDGLIPSTG 524


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 183/373 (49%), Gaps = 4/373 (1%)

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRK 140
           CF     ++       +   +MI +L ++ + ++   + + A++      V  F  ++  
Sbjct: 175 CFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISA 234

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCMKDRFI-P 198
           Y R     EA+  F+ M+  G+  NL  +N ++ A  K     +K  EIFD M    + P
Sbjct: 235 YGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQP 294

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  T++ LL    +      AR +F  MVD G + DI TY  ++D +CK G++D A  I+
Sbjct: 295 DRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIM 354

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M +    P    YS ++  Y    R++DA++ F EM+  G+  D   YN L+  + K 
Sbjct: 355 SEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKL 414

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTY 377
            +F+    V K+M + G+  +  T N +L G   +   DE  RVF  M +     +  TY
Sbjct: 415 GRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTY 474

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           + +I ++ +GG  ++A +V++  K       +  +S LI+ LC  G+V  S  LL++M +
Sbjct: 475 STLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTK 534

Query: 438 KGIRPSGETFGKL 450
           +GIRP+  T+  +
Sbjct: 535 EGIRPNVVTYNSI 547



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 167/349 (47%), Gaps = 19/349 (5%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           +  +  Y+++++++ K  Q  + +++++ M TK +L NV T+  ++  YA+V ++++A+ 
Sbjct: 328 DQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALN 387

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
            FN M+  GV  +  ++N LLS   K     +A ++   M++  I  D  TY+ LL G+G
Sbjct: 388 MFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYG 447

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K       R +F EM     +P+++TY  ++DV  K G   EA+ + +       +    
Sbjct: 448 KQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVV 507

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           +YS L+        +E +V    EM K GI  +V  YN++I AF ++   + V  V    
Sbjct: 508 LYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCV--VDDSG 565

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQ 386
            +  +   S +  ++   +  +    E  R+     KL     CEA         ++ C 
Sbjct: 566 ETTALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNSGKQ---EILCI 622

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            G  +K  +    +K+K   P++ TFS ++N         D+ +LLE++
Sbjct: 623 LGVFQKMHE----LKIK---PNVVTFSAILNACSRCDSFEDASMLLEEL 664



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMV--DTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           PD   Y+ LL   G   +  +A   F   V  ++G N        M+  L + G+V+ A 
Sbjct: 153 PDD--YTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAK 210

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +  +        T + +S L+  YG      +A+  F  M+ NG++ ++  YNA+I A 
Sbjct: 211 AVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDAC 270

Query: 316 CKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
            K   +FK V  +   M S GV P+  T N +L      G  + A R+F  M+ K  + D
Sbjct: 271 GKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQD 330

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY  ++   C+GG+++ AF++   M  K  +P++ T+S +I+G    G + D+  +  
Sbjct: 331 IFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFN 390

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKE 476
           +M   G+     ++  L  +  K GR E  L   +E  N  +++
Sbjct: 391 EMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRK 434


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 165/307 (53%), Gaps = 4/307 (1%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDR 195
           I+    + ++V +A   F  +++ G+  N+  +  L++ LC S     A  +  D +K +
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+  TYS LL+ + K+  +  A+E+F EMV    +PDIVTY  +++ LC   R+DEA 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M S  C      Y+ L++ +    R+ED +  F EM + G++++   YN LI  F
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
            +A            M+  G++P+  T NI+L GL   GE ++A  +F  M K  E D D
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLD 434

Query: 376 --TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT +I+  C+ G++E+A+ ++  + LK   P + T++ +++GLC KG++ +   L  
Sbjct: 435 IVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYT 494

Query: 434 DMIEKGI 440
            M ++G+
Sbjct: 495 KMKQEGL 501



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 170/336 (50%), Gaps = 2/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++  + R  +V +AV   + M + G   ++ A+N ++ +LCK+K V  A + F  ++ + 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           I P+  TY+ L+ G         A  +  +M+     P+++TY  ++D   K G+V EA 
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + + M      P    YS L++   + +RI++A   F  M   G LADV  YN LI  F
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CKA + ++  ++ ++M+ +G+  N+ T N ++ G    G+ D+A   F +M       D 
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++   C  GELEKA  +++ M+ +     + T++ +I G+C  G V ++  L   
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  KG++P   T+  +   L  +G    ++ L  KM
Sbjct: 461 LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 164/339 (48%), Gaps = 12/339 (3%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK------NVRKAQEIFDCMKDRFIPD 199
           K+ +A+  F+ M K     ++  FN LLSA+ K K      ++ K  E+     D +   
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY--- 121

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T++I++  +     +  A  I  +M+  G  PD VT G +V+  C+  RV +A+ +V 
Sbjct: 122 --TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     +P    Y+ ++ +     R+ DA D F E+E+ GI  +V  Y AL+   C ++
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 239

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYT 378
           ++ +  R+L DM  K + PN  T + +L+  +  G+  EA  +F  M+++  + D  TY+
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C    +++A +++  M  K  +  + +++ LING C    V D   L  +M ++
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G+  +  T+  L +   + G  D  +    +M+     P
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP 398



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++       +++EA   F++M   G   ++ ++N L++  CK+K V    ++F
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+ L++G+ +  ++ +A+E F +M   G +PDI TY I++  LC  
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +++AL I + M           Y+ ++       ++E+A   F  +   G+  D+  Y
Sbjct: 414 GELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++   C       V  +   M  +G+  N  T
Sbjct: 474 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +D  L  A ++F +MV +   P IV +  ++  + K  + D  + + K M+    R   +
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            ++++++ +    ++  A+    +M K G   D     +L+  FC+ N+  +   ++  M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G  P                                  D   Y  +I   C+   + 
Sbjct: 182 VEIGYKP----------------------------------DIVAYNAIIDSLCKTKRVN 207

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AF  +K ++ K   P++ T++ L+NGLC+    SD+  LL DMI+K I P+  T+  L 
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267

Query: 452 KLLIKEGREDVLKFLQEKMNLLVKEP 477
              +K G+    K L E+M  +  +P
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDP 293


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 202/433 (46%), Gaps = 11/433 (2%)

Query: 27  PSTE-ALDAAKSISKIMLSSPKVVLDT-ALDQSGIRVSPEIVEDVLEK----FRNAGTLA 80
           PS + AL   K +    +++ + + D   L +  + V   IV D+L +     R A    
Sbjct: 140 PSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAF 199

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMR 139
            CF+   EK       +   + M+    K+ + ++ W L   M R +    V TF I++ 
Sbjct: 200 KCFYMMKEK--GIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVN 257

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
              +  K+++A      M+  G   N+ ++N ++       N+  A+ I D M+ + I P
Sbjct: 258 VLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEP 317

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           DS TY  L+ G  K+  L  A  +F +MV+ G  P+ VTY  ++D  C  G ++ A    
Sbjct: 318 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 377

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M      P+   Y++LVH   +E R+ +A D   EM K GI+ D   YN LI  + + 
Sbjct: 378 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 437

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              K  + +  +M SKG+ P   T   ++  L  R    EA  +F +++ +    D   +
Sbjct: 438 GNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 497

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             M+   C  G +E+AF + K M  K   P   TF+ L+ G C +G V ++ +LL++M  
Sbjct: 498 NAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKR 557

Query: 438 KGIRPSGETFGKL 450
           +GI+P   ++  L
Sbjct: 558 RGIKPDHISYNTL 570



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 178/361 (49%), Gaps = 9/361 (2%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
           ++ +V +Y+++I   +     +    +++AMR K +  +  T+  ++    +  ++EEA 
Sbjct: 280 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 339

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
             F+ M + G+  N   +N L+   C   ++ +A    D M K   +P   TY++L+   
Sbjct: 340 GLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 399

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             +  +  A ++ +EM   G  PD +TY I+++   + G   +A  +   M S    PT 
Sbjct: 400 FMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTH 459

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L++     NR+++A D F ++   G+  DV M+NA++   C     +  + +LK+
Sbjct: 460 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKE 519

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYTMMIKMFCQ 386
           M+ K V P+  T N ++ G    G+ +EA  +     RR IK    D  +Y  +I  + +
Sbjct: 520 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK---PDHISYNTLISGYGR 576

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++ AF+V   M    F P++ T++ LI  LC       +  LL++M+ KGI P   T
Sbjct: 577 RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDST 636

Query: 447 F 447
           +
Sbjct: 637 Y 637



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 173/342 (50%), Gaps = 2/342 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           +ET   ++  + ++ ++E A   +  M +  ++  +  FN +++ LCK   ++KA+E   
Sbjct: 214 IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIG 273

Query: 191 CMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M+   F P+  +Y+ ++ G+    N+  AR I   M   G  PD  TYG ++  +CK G
Sbjct: 274 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 333

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R++EA G+   M      P +  Y+ L+  Y  +  +E A     EM K GI+  V+ YN
Sbjct: 334 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYN 393

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
            L+ A     +      ++K+M  KG+ P++ T NI++NG    G   +A+ +   M+ K
Sbjct: 394 LLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSK 453

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E    TYT +I +  +   +++A  +++ +  +   P +  F+ +++G C  G V  +
Sbjct: 454 GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERA 513

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            +LL++M  K + P   TF  L +   +EG+ +  + L ++M
Sbjct: 514 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 555



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDC---MKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           F+ L+   C+   +R+A E F C   MK++  +P  +T + +L  + K   +  A  ++ 
Sbjct: 182 FDLLVRVCCE---LRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 238

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM     +  + T+ IMV+VLCK G++ +A   +  M+    +P    Y+ ++H Y    
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 298

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            IE A      M   GI  D   Y +LI   CK  + +    +   M   G+ PN+ T N
Sbjct: 299 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 358

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +++G   +G+ + A+     M+K        TY +++      G + +A  + K M+ K
Sbjct: 359 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 418

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             IP   T+++LING    G    +  L  +M+ KGI P+  T+  L  +L +  R
Sbjct: 419 GIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNR 474



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 8/258 (3%)

Query: 220 REIFREMV---DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
           RE+F E+    D       + + ++V V C+  R DEA      M      P     + +
Sbjct: 161 RELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDM 220

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   NR+E A   + EM +  I + V  +N ++   CK  K K     +  M   G 
Sbjct: 221 LSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGF 280

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  + N I++G   RG  + A R+   M +K  E D+ TY  +I   C+ G LE+A  
Sbjct: 281 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 340

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  M     +P+  T++ LI+G C+KG +  +    ++M++KGI PS  T+  L   L 
Sbjct: 341 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALF 400

Query: 456 KEGR----EDVLKFLQEK 469
            EGR    +D++K +++K
Sbjct: 401 MEGRMGEADDMIKEMRKK 418



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +++ L+   C+  +    ++    M  KG+ P   TCN +L+  +     + A+ ++  M
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            +L   +   T+ +M+ + C+ G+L+KA +   +M+   F P++ +++ +I+G   +G +
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             +  +L+ M  KGI P   T+G L   + KEGR +    L +KM
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 345



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           VE A      M +  V  +   FN L+   C+   V +A+ + D MK R I PD  +Y+ 
Sbjct: 510 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNT 569

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G+G+  ++  A  +  EM+  G NP ++TY  ++  LCK    D A  ++K M +  
Sbjct: 570 LISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG 629

Query: 266 CRPTSFIYSVLVHTYG-VENRIED 288
             P    Y  L+   G V+  +ED
Sbjct: 630 ISPDDSTYLSLIEGMGNVDTLVED 653


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 181/358 (50%), Gaps = 4/358 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  ++ +I++L +  Q +    ++  M +  ++  E TF  IM+ Y     ++ A+    
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIRE 248

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKD 213
            M ++G + +  + N ++   CK   V  A      M  +D F PD  T++ L+ G  K 
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            ++  A EI   M+  G +PD+ TY  ++  LCK G V EA+  +  M +  C P +  Y
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+ T   EN++E+A +    +   GIL DV  +N+LI   C     +    + ++M S
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           KG  P+  T N++++ L  +G+ DEA  + ++M +  C     TY  +I  FC+  ++ +
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIRE 488

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A +++  M++     +  T++ LI+GLC    V D+  L++ MI +G +P   T+  L
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 182/362 (50%), Gaps = 3/362 (0%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  F +    Q  +      +++++  L K    +   ++++ M  +    +V T+  ++
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
               ++ +V+EAV   + M     + N   +N L+S LCK   V +A E+   +  +  +
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  T++ L++G     N   A E+F EM   GC PD  TY +++D LC  G++DEAL +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +K M+ + C  +   Y+ L+  +   N+I +A + F EME +G+  +   YN LI   CK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADT 376
           + + ++  +++  M  +G  P+  T N +L      G+  +A  + + M    CE D  T
Sbjct: 518 SRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT 577

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I   C+ G +E A K+ + +++K    + H ++ +I GL  K   +++  L  +M+
Sbjct: 578 YGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREML 637

Query: 437 EK 438
           E+
Sbjct: 638 EQ 639



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 191/417 (45%), Gaps = 41/417 (9%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           Q+ Y+  V  Y+S+I  L K+ + +   + ++ M T+    N  T+  ++    +  +VE
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------CMKDRF----IP 198
           EA     V+   G+  ++  FN L+  LC ++N R A E+F+      C  D F    + 
Sbjct: 383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLI 442

Query: 199 DSK--------------------------TYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           DS                           TY+ L++G+ K   +  A EIF EM   G +
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVS 502

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
            + VTY  ++D LCK+ RV++A  ++  M     +P  F Y+ L+  +     I+ A D 
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADI 562

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M  NG   D+  Y  LI   CKA + +   ++L+ +  KG+A      N ++ GL  
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFR 622

Query: 353 RGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQ-GGELEKAFKVWKYMKLKRFIPSM 409
           + +T EA  +FR M++  EA  DA +Y ++ +  C  GG + +A      +  K F+P  
Sbjct: 623 KRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEF 682

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
            +  +L  GL    +  ++ V L +M+ +  R S E    ++ LL     +D L  L
Sbjct: 683 SSLYMLAEGLLTLSM-EETLVKLVNMVMQKARFSEEEVSMVKGLLKIRKFQDALATL 738



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 168/359 (46%), Gaps = 38/359 (10%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M  +G+  +++ FN L+ ALC++  +R A  + + M     +PD KT++ +++G+ ++ +
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGD 239

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYS 274
           L  A  I  +MV+ GC+   V+  ++V   CK GRV++AL  ++ M +     P  + ++
Sbjct: 240 LDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV+       ++ A++    M + G   DV  YN++I   CK  + K     L  M ++
Sbjct: 300 TLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITR 359

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--------------------------- 367
             +PN+ T N +++ L    + +EA  + R +                            
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419

Query: 368 ---------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                    K CE D  TY M+I   C  G+L++A  + K M+L     S+ T++ LI+G
Sbjct: 420 MELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 479

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            C    + ++  + ++M   G+  +  T+  L   L K  R +    L ++M +  ++P
Sbjct: 480 FCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 149/303 (49%), Gaps = 6/303 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           LL +L    +   A  +F+    K  F P+   Y  +L   G+  +    R+I  +M ++
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNS 112

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIED 288
           GC      + I+++   +    DE LG+V  M D    +P +  Y+ +++     N ++ 
Sbjct: 113 GCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKL 172

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
                 +M   GI  DV+ +N LI A C+A++ +    +L+DM S G+ P+ +T   I+ 
Sbjct: 173 VEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQ 232

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FI 406
           G I  G+ D A R+  +M++  C     +  +++  FC+ G +E A    + M  +  F 
Sbjct: 233 GYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF 292

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKF 465
           P  +TF+ L+NGLC  G V  +  +++ M+++G  P   T+  +   L K G  ++ ++F
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 466 LQE 468
           L +
Sbjct: 353 LDQ 355



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 2/179 (1%)

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           L  +K     + A+Y  ++    ++  F ++ ++L+DM + G    +    I++      
Sbjct: 72  LASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQF 131

Query: 354 GETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
              DE   V   MI       DT  Y  M+ +   G  L+        M +    P + T
Sbjct: 132 ELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVST 191

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           F+VLI  LC    +  + ++LEDM   G+ P  +TF  + +  I+EG  D    ++E+M
Sbjct: 192 FNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQM 250


>gi|413932621|gb|AFW67172.1| PHD finger protein [Zea mays]
          Length = 1166

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 192/406 (47%), Gaps = 20/406 (4%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA--- 108
            ALD  G  ++  +V DVL + R    LAF FF WA +Q  Y H    Y+ +I+ L+   
Sbjct: 458 AALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYNHEPTTYNDIIDILSGTR 517

Query: 109 -KIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
            K RQ+ ++ ++++ M+    R + VE    I+R Y                 +      
Sbjct: 518 YKSRQFGVLCNVLDHMKRHGSRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPE 577

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             A N LL A CK   V++A+ +F  +K + + +++TYS L  GW +  +  +A ++  E
Sbjct: 578 TDALNVLLDAFCKCGMVKEAEAVFGRVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEE 637

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS---TVCRPTSFIYSVLVHTYGV 282
           M+     P+  TY   +   C AG V EA  + + M +   T+  PT+  YS+++     
Sbjct: 638 MIQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAK 697

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
            +R+E+  +   +M   G + DV  Y  LI   C   K    YRVL +M   G  P+   
Sbjct: 698 ADRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPD--- 754

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
                  ++   + D+A  +  RMI+  CE    TY MM+ MF + GE  +A  +   M 
Sbjct: 755 -------IVTHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMD 807

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            +R   ++ T+ ++I GL D G    +  LL+++I + ++ S + F
Sbjct: 808 KRRCQRAIDTYEIMIYGLFDCGETEYATALLDEVINRDMKLSYKKF 853



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N L+ AFCK    K    V   +  K +  N+ T + +  G     +  +A +V   MI+
Sbjct: 582 NVLLDAFCKCGMVKEAEAVFGRVKRKLLG-NAETYSTLFFGWCRARDPKKAMKVLEEMIQ 640

Query: 369 LCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI---PSMHTFSVLINGLCDKGI 424
           +    ++ TY   I  FC  G + +A +++++M+ +      P+  T+S++I  L     
Sbjct: 641 MKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYSIMIVALAKADR 700

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKL 450
           + +   LL DM   G  P   T+  L
Sbjct: 701 MEECFELLSDMRSCGCMPDVTTYKDL 726


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 190/379 (50%), Gaps = 9/379 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++ +   V  Y+++I+SL K    +    L   M ++  + NV T+ +++    +V +++
Sbjct: 109 KRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRID 168

Query: 149 EAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTY 203
           EA      M +    V  N+  +N  L  LCK     +A E+   ++D   R  PD+ T+
Sbjct: 169 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 228

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           S L++G  K      A     +M+  G  P++VTY  +V+ LCKA +++ A  +++SM  
Sbjct: 229 STLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVD 286

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    YSVLV  +   +R+++A++    M   G   +V  +N++I   CK+++   
Sbjct: 287 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 346

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            +++   + ++ + P+  T NI++ G    G  ++A  +F  M+ K  + D  T+  +I 
Sbjct: 347 AFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALID 406

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+ G++E A  +   M      P++ T++VL++GLC  G + + C  LE+M+  G  P
Sbjct: 407 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVP 466

Query: 443 SGETFGKLRKLLIKEGRED 461
              T+G L   L +  R D
Sbjct: 467 ESMTYGSLVYALCRASRTD 485



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 172/329 (52%), Gaps = 3/329 (0%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            Y  +V  Y++++  L K  + +    ++ +M  K +  +V T+ +++  + +  +V+EA
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +   + M   G T N+  FN ++  LCKS    +A +I   + +R  +PD  T++IL+ G
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K  N  +A  +F EMV     PD++T+G ++D LCKAG+V+ A  I+  M +    P 
Sbjct: 373 ACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 432

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+VLVH      RIE+  +   EM  +G + +   Y +L+ A C+A++  +  +++ 
Sbjct: 433 VVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVS 492

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
            + S G  P++ T NI+++GL   G+T++A  V   M+ K  + D+ T+        + G
Sbjct: 493 KLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSG 552

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            L    ++ + +  K  +P   T S +++
Sbjct: 553 NLAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 172/364 (47%), Gaps = 7/364 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNV 156
           Y+S ++ L K        +L+ ++R   +    +  TF  ++    +  + +EA    + 
Sbjct: 191 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DD 248

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G   N+  +N L++ LCK+  + +A  + + M D+ + PD  TYS+L++ + K   
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A E+   M   GC P++VT+  ++D LCK+ R  EA  I   + + +  P    +++
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+         E A   F EM    +  DV  + ALI   CKA + +    +L  M + G
Sbjct: 369 LIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           V PN  T N++++GL   G  +E       M+   C  ++ TY  ++   C+    + A 
Sbjct: 429 VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDAL 488

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   +K   + P   T+++L++GL   G    +  +LE+M+ KG +P   TF      L
Sbjct: 489 QLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGL 548

Query: 455 IKEG 458
            + G
Sbjct: 549 HRSG 552



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 175/390 (44%), Gaps = 44/390 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTF-NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +V  + I+++   R  +   A+  F   M + GV   +  +N +++ LCKS  +    E+
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F+ +  R   PD  TY+ L++   K  +L  AR +   M   GC P++VTY ++++ LCK
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCK 163

Query: 248 AGRVDEALGIVKSMDSTVC---------------------------------------RP 268
            GR+DEA  +++ M    C                                        P
Sbjct: 164 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 223

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            +  +S L+       + ++A +   +M   G + +V  YNAL+   CKA+K +  + ++
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEACND--DMIAGGYVPNVVTYNALVNGLCKADKMERAHAMI 281

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
           + M  KGV P+  T +++++        DEA  +   M  + C  +  T+  +I   C+ 
Sbjct: 282 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 341

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
               +AF++   +  +  +P   TF++LI G C  G    +  L E+M+ K ++P   TF
Sbjct: 342 DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTF 401

Query: 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G L   L K G+ +  + + + M  L   P
Sbjct: 402 GALIDGLCKAGQVEAARDILDLMGNLGVPP 431



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 9/304 (2%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           ++++A +N +L +LC++    +A EIF  +  +D   P   TY+ ++ G  K   L    
Sbjct: 42  SRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGM 101

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+F E+V  G +PD+VTY  ++D LCKAG ++EA  +   M S  C P    YSVL++  
Sbjct: 102 ELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGL 161

Query: 281 GVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDM--NSKGV 336
               RI++A +   EM +    +L ++  YN+ +   CK +       +++ +   S  V
Sbjct: 162 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 221

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFK 395
           +P++ T + +++GL   G+TDEA      MI      +  TY  ++   C+  ++E+A  
Sbjct: 222 SPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHA 279

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + M  K   P + T+SVL++  C    V ++  LL  M  +G  P+  TF  +   L 
Sbjct: 280 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 339

Query: 456 KEGR 459
           K  R
Sbjct: 340 KSDR 343


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 176/355 (49%), Gaps = 3/355 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  L K     +  DL   M  + +  +V  + I++    +    ++A+  FN M
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G+  ++  ++ L+  LC         ++   M  R  IPD  T+S L++ + K+  L
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 331

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+E++ EM+  G  PD +TY  ++D  CK   + EA  +   M S  C P    YS+L
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +++Y    R++D +  F E+   G++ +   YN L+  FC++ K      + ++M S+GV
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T  I+L+GL   GE ++A  +F +M K         Y ++I   C   +++ A+ 
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++  +  K   P + T++V+I GLC KG +S++ +L   M E G  P   T+  L
Sbjct: 512 LFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 166/340 (48%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++  +    +V EAV   + M +     +L   + L++ LC    V +A  + D M
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +  F PD  TY  +L    K  N   A ++FR+M +      +V Y I++D LCK G  
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSF 261

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+AL +   M+    +     YS L+     + + +D      EM    I+ DV  ++AL
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  F K  K      +  +M ++G+AP++ T N +++G        EA ++F  M+ K C
Sbjct: 322 IDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC 381

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D  TY+++I  +C+   ++   ++++ +  K  IP+  T++ L+ G C  G ++ +  
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L ++M+ +G+ PS  T+G L   L   G  +    + EKM
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 171/340 (50%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++ +  +      A+  F  M++  +  ++  ++ ++ +LCK  +   A  +F+ M
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           + + I  D  TYS L+ G   D       ++ REM+     PD+VT+  ++DV  K G++
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 331

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +   M +    P +  Y+ L+  +  EN + +A   F  M   G   D+  Y+ L
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I ++CKA +  +  R+ ++++SKG+ PN+ T N ++ G    G+ + A  +F+ M+ +  
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                TY +++   C  GEL KA ++++ M+  R    +  ++++I+G+C+   V D+  
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L   + +KG++P   T+  +   L K+G       L  KM
Sbjct: 512 LFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 186/394 (47%), Gaps = 41/394 (10%)

Query: 69  VLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           VL +   +G   LA   F+  E ++N + SV  Y  +I+SL K   +     L N M  K
Sbjct: 216 VLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274

Query: 127 RM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
            +  +V T+  ++       K ++       M    +  ++  F+ L+    K   + +A
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334

Query: 186 QEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           +E+++ M  R I PD+ TY+ L++G+ K+  L  A ++F  MV  GC PDIVTY I+++ 
Sbjct: 335 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH-------------------------- 278
            CKA RVD+ + + + + S    P +  Y+ LV                           
Sbjct: 395 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPS 454

Query: 279 --TYGV-------ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             TYG+          +  A++ F +M+K+ +   + +YN +I   C A+K  + + +  
Sbjct: 455 VVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFC 514

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG 388
            ++ KGV P+  T N+++ GL  +G   EA  +FR+M +  C  D  TY ++I+    G 
Sbjct: 515 SLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGS 574

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            L  + ++ + MK+  F     T  ++I+ L D+
Sbjct: 575 GLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR 608



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 6/308 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           +N    V  + ++I+   K  +     +L N M T+ +  +  T+  ++  + +   + E
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHE 368

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A   F++M   G   ++  ++ L+++ CK+K V     +F  +  +  IP++ TY+ L+ 
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVL 428

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ +   L  A+E+F+EMV  G  P +VTYGI++D LC  G +++AL I + M  +    
Sbjct: 429 GFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
              IY++++H     ++++DA   F  +   G+  DV  YN +IG  CK         + 
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 548

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQ 386
           + M   G  P+  T NI++   +G      +  +   M K+C   AD+ T  M+I M   
Sbjct: 549 RKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM-KVCGFSADSSTIKMVIDMLSD 607

Query: 387 GGELEKAF 394
              L+K+F
Sbjct: 608 -RRLDKSF 614



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 42/286 (14%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD---------- 262
           D  +  A ++F  M+ +   P  + +  +   + +  + D  LG  K M+          
Sbjct: 48  DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 107

Query: 263 -----STVCR--------------------PTSFIYSVLVHTYGVENRIEDA---VDTFL 294
                +  CR                    P +  +S LV+ + +E R+ +A   VD  +
Sbjct: 108 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           EM++     D+   + LI   C   +      ++  M   G  P+  T   +LN L   G
Sbjct: 168 EMKQR---PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 224

Query: 355 ETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
            +  A  +FR+M  +  +A    Y+++I   C+ G  + A  ++  M++K     + T+S
Sbjct: 225 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 284

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            LI GLC+ G   D   +L +MI + I P   TF  L  + +KEG+
Sbjct: 285 SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 5/193 (2%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ ++ DA+D F  M ++  L     +N L  A  +  ++  V    K M   G+  +  
Sbjct: 47  VDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 106

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T  I++N    + +   A+ V  R  KL  E D  T++ ++  FC  G + +A  +   M
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
              +  P + T S LINGLC KG VS++ VL++ M+E G +P   T+G +   L K G  
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226

Query: 461 ----DVLKFLQEK 469
               D+ + ++E+
Sbjct: 227 ALALDLFRKMEER 239



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +V++A+ + +SM  +   PT   ++ L        + +  +     ME NGI  D+    
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            +I  +C+  K    + VL      G  P++ T + ++NG    G   EA  +  RM+++
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 370 CE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            +  D  T + +I   C  G + +A  +   M    F P   T+  ++N LC  G  + +
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             L   M E+ I+ S   +  +   L K+G  +D L    E
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 183/363 (50%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I  L K  +  +  +L+N M   ++  +V  +  ++    + + V++A+  F  M
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              G+  ++  ++ L+S LC       A  +   M +R I P+  T++ L++ + K+  L
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++F EM+    +P+IVTY  +++  C   R+DEA  I   M S  C P    Y+ L
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +    ++ D ++ F +M + G++ +   Y  LI  F +A+   N   V K M S GV
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N +L+GL   G+ ++A  VF  + K   E D  TY +M +  C+ G++E  + 
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P +  ++ +I+G C KG+  ++  L   M E G  P   T+  L +  +
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566

Query: 456 KEG 458
           ++G
Sbjct: 567 RDG 569



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 177/358 (49%), Gaps = 3/358 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK++++ ++      M    +  N+ T+ I++    R  ++  A+   
Sbjct: 64  SIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAIL 123

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   N LL+  C    + +A  + D M +  + PD+ T++ L+ G  + 
Sbjct: 124 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 183

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+VTYG +++ LCK G  D AL ++  M+         IY
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 243

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++ +      ++DA++ F EM+  GI  DV  Y++LI   C   ++ +  R+L DM  
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T N +++     G+  EA ++F  MI +  + +  TY  +I  FC    L++
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 363

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A +++  M  K  +P + T++ LING C    V D   L  DM  +G+  +  T+  L
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 175/356 (49%), Gaps = 3/356 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           +  Y+     + +++  L +  +      LV  M  K    ++ T+  ++    +  + +
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   N M+K  +  ++  ++ ++ +LCK ++V  A  +F  M ++ I PD  TYS L+
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
                      A  +  +M++   NP++VT+  ++D   K G++ EA  +   M      
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++ + + +R+++A   F  M     L DV  YN LI  FCKA K  +   +
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
            +DM+ +G+  N+ T   +++G     + D A  VF++M+      +  TY  ++   C+
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            G+LEKA  V++Y++  +  P ++T++++  G+C  G V D   L   +  KG++P
Sbjct: 463 NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKP 518



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 168/357 (47%), Gaps = 21/357 (5%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK--------QQNYEHSVRAYH 101
           L T +D  GIR        ++    N G       +W++         ++    +V  ++
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYG-------RWSDASRLLSDMLERKINPNVVTFN 314

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           S+I++ AK  +      L + M  + +  N+ T+  ++  +    +++EA   F +M   
Sbjct: 315 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRA 219
               ++  +N L++  CK+K V    E+F  M  R  + ++ TY+ L+ G+ +  +   A
Sbjct: 375 DCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNA 434

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
           + +F++MV  G +P+I+TY  ++D LCK G++++A+ + + +  +   P  + Y+++   
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                ++ED  D F  +   G+  DV  YN +I  FCK    +  Y +   M   G  P+
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAF 394
           S T N ++   +  G+   +  + + M + C    DA TY ++  M    G L+K F
Sbjct: 555 SGTYNTLIRAHLRDGDKAASAELIKEM-RSCRFAGDASTYGLVTDML-HDGRLDKGF 609



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 2/278 (0%)

Query: 184 KAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +A ++F  M K R  P    +S LL    K            +M   G + ++ TY IM+
Sbjct: 48  EAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI 107

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + LC+  ++  AL I+  M      P+    + L++ +   NRI +AV    +M + G  
Sbjct: 108 NCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ 167

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D   +  L+    + NK      +++ M  KG  P+  T   ++NGL  RGE D A  +
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227

Query: 363 FRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             +M K   EAD   Y+ +I   C+   ++ A  ++  M  K   P + T+S LI+ LC+
Sbjct: 228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 287

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            G  SD+  LL DM+E+ I P+  TF  L     KEG+
Sbjct: 288 YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 1/245 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A ++F EMV +   P IV +  ++  + K  + D  +   + M+        + Y++
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +++     +++  A+    +M K G    +   N+L+  FC  N+      ++  M   G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
             P++ T   +++GL    +  EA  +  RM +K C+ D  TY  +I   C+ GE + A 
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +   M+  +    +  +S +I+ LC    V D+  L  +M  KGIRP   T+  L   L
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285

Query: 455 IKEGR 459
              GR
Sbjct: 286 CNYGR 290



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           ++++AVD F EM K+     +  ++ L+ A  K  KF  V    + M   GV+ N  T N
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I++N L  R +   A  +  +M+KL    +  T   ++  FC G  + +A  +   M   
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ L++GL      S++  L+E M+ KG +P   T+G +   L K G  D+ 
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224

Query: 464 KFLQEKM 470
             L  KM
Sbjct: 225 LNLLNKM 231


>gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 211/444 (47%), Gaps = 15/444 (3%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           KS+  ++ ++    ++ +L  + I V P  VE+VL+        +  FF+W+ +  N  H
Sbjct: 44  KSLCHLIATTSAATVEHSLQSAAISVIPHDVEEVLKLSYGFPGQSVKFFRWSGRHLNDNH 103

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  +++ +++ L + R +  MWD V +M  + +L++ TF  +   Y    ++ EA+  F 
Sbjct: 104 TPYSWNLVVDILGRNRFFDPMWDAVKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFE 163

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +M  YG  ++  A N LLSA+C +     A +     K    PD+ TY+IL+EGW  + +
Sbjct: 164 IMDNYGCVRDAFALNSLLSAICSNGRTLDACDYLQVAKKFVRPDTDTYAILMEGWEGEKS 223

Query: 216 LPRAREIFREMV-DTGCNP-DIVTYGIMVDVLCKAGR-VDEALGIVKSMDSTVCRP-TSF 271
           +  A+E F EMV + G +P ++  Y   +  L +    + EA+  V SM    C P   F
Sbjct: 224 MVSAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGHDGLLEAIKFVDSMRDRRCYPGVRF 283

Query: 272 IYSVL---VHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYR 326
           + + L   V  + V        + F E+   G  +     MYN +IG  C         R
Sbjct: 284 LKAALDECVKCHDVRT-----AEFFWEVLVVGKVLQPTSEMYNLMIGLCCYRGDTDAARR 338

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFC 385
           +L +M  +G  P+  T N++   L+   +  EA  VF  M++  C  + D   + +K + 
Sbjct: 339 MLHEMVYQGAFPDVVTYNLLFKFLLKGRKLREASSVFAEMVQNECVPEQDNCDLAVKAYV 398

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             GE   A KVWK +          T + L+ GLC+      +    EDMI +GI  S  
Sbjct: 399 DCGEPVMAIKVWKCLVENYKKGLEQTANFLVVGLCNLNRPQVAVKYAEDMIGRGISLSSS 458

Query: 446 TFGKLRKLLIKEGREDVLKFLQEK 469
           T  KLR+ L+KE RE V + L  K
Sbjct: 459 TLSKLRQSLVKERREYVYEDLLRK 482


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 192/369 (52%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  ++++I  L K+ ++    +L + M  +    +V T+  I+    ++ +   A   F
Sbjct: 191 TIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLF 250

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + G   ++  ++ ++ +LCK + V +A +IF  MK + I P+  TY+ L++G    
Sbjct: 251 RKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNF 310

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +  EM+     P+IVT+ +++++ CK G V EA G++K+M      P    Y
Sbjct: 311 SRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTY 370

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L++ Y ++  + +A   F  M   G   DV  YN LI  +CKA +     ++  +M  
Sbjct: 371 SSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIH 430

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEK 392
           +G+ P+  + N +++GL   G   EA+ +F+ M+      D  TY++++  FC+ G L K
Sbjct: 431 QGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAK 490

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF++++ M+     P+M  +++LI+ +C    + ++  L  ++  +G++P+ + +  +  
Sbjct: 491 AFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIIN 550

Query: 453 LLIKEGRED 461
            L KEG  D
Sbjct: 551 GLCKEGLLD 559



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 183/366 (50%), Gaps = 10/366 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-----NVETFCIIMRKYARVQKVEEAVYTF 154
           ++ ++ ++ K+R Y    D V ++  +  L     +  T  +++  + ++Q+V+      
Sbjct: 124 FNKLLSAIVKMRHYH---DAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVL 180

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             + K G+   +  FN L++ LCK     +A E+FD M  R + PD  TY+ ++ G  K 
Sbjct: 181 AKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKI 240

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +FR+M + GC PD+VTY  ++D LCK  RV+EAL I   M +    P  F Y
Sbjct: 241 GETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTY 300

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+      +R  +A     EM    I+ ++  ++ LI  FCK         VLK M  
Sbjct: 301 NSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTE 360

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            GV PN  T + ++NG   + E  EA ++F  MI K C+ D  +Y ++I  +C+   + +
Sbjct: 361 MGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGE 420

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M  +   P + +++ LI+GLC  G + ++  L ++M+  G  P   T+  L  
Sbjct: 421 AKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLD 480

Query: 453 LLIKEG 458
              K+G
Sbjct: 481 GFCKQG 486



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 181/356 (50%), Gaps = 3/356 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
           + Y+  V  Y ++I  L KI +      L   M       +V T+  I+    + ++V E
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 280

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLE 208
           A+  F+ M+  G++ N+  +N L+  LC     R+A  + +  M    +P+  T+S+L+ 
Sbjct: 281 ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 340

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            + K+ N+  AR + + M + G  P++VTY  +++       V EA  +   M +  C+P
Sbjct: 341 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKP 400

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             F Y++L++ Y    RI +A   F EM   G+  D+  YN LI   C+  + +  + + 
Sbjct: 401 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 460

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387
           K+M + G  P+  T +I+L+G   +G   +A+R+FR M     + +   Y ++I   C+ 
Sbjct: 461 KNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKS 520

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             L++A K++  + ++   P++  ++ +INGLC +G++ ++     +M E G  P+
Sbjct: 521 RNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 168/326 (51%), Gaps = 3/326 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +    ++  Y+S+I+ L    +++    ++N M +  ++ N+ TF +++  + +   V
Sbjct: 289 KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 348

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA      M + GV  N+  ++ L++       V +A+++FD M  +   PD  +Y+IL
Sbjct: 349 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNIL 408

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A+++F EM+  G  PDIV+Y  ++D LC+ GR+ EA  + K+M +   
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 468

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    YS+L+  +  +  +  A   F  M+   +  ++ MYN LI A CK+   K   +
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 528

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFC 385
           +  ++  +G+ PN +    I+NGL   G  DEA   FR M +  C  +  +Y ++I+ F 
Sbjct: 529 LFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFL 588

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHT 411
           Q  +  +A ++   M+ K F+  + T
Sbjct: 589 QHKDESRAVQLIGEMREKGFVADVAT 614



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 165/370 (44%), Gaps = 42/370 (11%)

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-------VRKAQEIFDCMKDRFI 197
           + +++A+  FN M        +  FN LLSA+ K ++       + K  E+     D + 
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159

Query: 198 PDS------------------------------KTYSILLEGWGKDPNLPRAREIFREMV 227
                                             T++ L+ G  K     +A E+F +MV
Sbjct: 160 LHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMV 219

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             G  PD+ TY  +++ LCK G    A G+ + M    C+P    YS ++ +   + R+ 
Sbjct: 220 ARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVN 279

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A+D F  M+  GI  ++  YN+LI   C  ++++    +L +M S  + PN  T ++++
Sbjct: 280 EALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 339

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           N     G   EA  V + M ++  E +  TY+ ++  +    E+ +A K++  M  K   
Sbjct: 340 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCK 399

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDV 462
           P + ++++LING C    + ++  L  +MI +G+ P   ++  L   L + GR     D+
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDL 459

Query: 463 LKFLQEKMNL 472
            K +    NL
Sbjct: 460 FKNMLTNGNL 469



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTC----NIILNGLIGRGETDEAYRVFRRMIKLCEAD 373
           A+ F+N+   L   N   +    R C    N +L+ ++      +A     + ++L    
Sbjct: 96  ASSFRNIDDALAYFNHM-LHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLS 154

Query: 374 ADTYT--MMIKMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            DTYT  M+I  F Q   ++  F V  K +KL   + ++ TF+ LINGLC  G    +  
Sbjct: 155 PDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQL-TIVTFNTLINGLCKVGKFGQAVE 213

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L +DM+ +G +P   T+  +   L K G       L  KM
Sbjct: 214 LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKM 253


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 186/378 (49%), Gaps = 7/378 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           + +  +V  ++ +I    K +     + L+  M  K  + NV TF I++    +  +V E
Sbjct: 178 KGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 237

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLE 208
           A      M   G + N+  ++ +++ LCK   V  A E+F  M+ R  P +  T++IL++
Sbjct: 238 AQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILID 297

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCR 267
           G  K   +  AR+++  M +TGC PDI+TY  ++D LCK+ +VDEA  + +++ +S V  
Sbjct: 298 GLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA 357

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
             +  YS L H Y    R+ DA   F  +   G   D+A Y +LI  +CK ++   V  +
Sbjct: 358 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 417

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
           +++M SKG  P   T + +L GL     T+ A ++F  M  + C  DA  Y ++++   +
Sbjct: 418 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 477

Query: 387 GGELEKAFKVWKYMKLKR---FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             +  KA  V + +  KR   F PS      L+  LC  G   D+  LL  M E+G   +
Sbjct: 478 ASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAA 537

Query: 444 GETFGKLRKLLIKEGRED 461
             ++  L   L +  R D
Sbjct: 538 VSSYNGLLSGLSRLQRWD 555



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 159/336 (47%), Gaps = 2/336 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M N  T+ I++R ++    ++ A+     M+  G   N      L+  LC +  V +A E
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            F  M     PD  TY+ L+    K      A+ + REM+  GC PD VT+  ++D LCK
Sbjct: 66  HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 248 AGRVDEALGIVKS-MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            G  ++A  +++  +   +    +   +++       N +E A      +   G    V 
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 185

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           M+N +I  FCKA    + Y++L+ M  KG  PN  T  I++ GL       EA ++  +M
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245

Query: 367 IK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +   C  +  TY+ +I   C+ G+++ A+++++ M+ +   P++ T ++LI+GLC    +
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 305

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            ++  L   M E G  P   T+  L   L K  + D
Sbjct: 306 EEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVD 341



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 173/356 (48%), Gaps = 5/356 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++ +L K  ++     ++  M  +    +  TF  ++    +    E+A     
Sbjct: 78  VMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLE 137

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
            + + G+  + AAF  ++  LC   N V  A ++   +  + F P    +++++ G+ K 
Sbjct: 138 DVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKA 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A ++   M++ GC P++ T+ I++  LCKA RV EA  +++ M +  C P    Y
Sbjct: 198 KDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTY 257

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S +++    + +++DA + F  ME+     +V  +N LI   CKA + +   ++   M  
Sbjct: 258 STVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRE 317

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELE 391
            G AP+  T N +++GL    + DEA+++F+ + +  +  A+A TY+ +   +   G + 
Sbjct: 318 TGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMA 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            A +++  +  K F P + T++ LI   C      +   L+E+M  KG  P   T 
Sbjct: 378 DACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 433



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 179/389 (46%), Gaps = 7/389 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I  L K  Q    ++L   M  +    NV T  I++    + +++EEA   +
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 312

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGK 212
           + M++ G   ++  +N L+  LCKS  V +A ++F  + +  +   ++ TYS L  G+  
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 372

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +  A  IF  +VD G +PD+ TY  ++   CK  R  E + +V+ M S    P    
Sbjct: 373 LGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT 432

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK--- 329
            S ++      N  E A+  F  M   G   D  +YN ++    +A+K      VL+   
Sbjct: 433 LSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVI 492

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-DTYTMMIKMFCQGG 388
           D   +   P+S   + ++  L   G TD+A ++  +M +   A A  +Y  ++    +  
Sbjct: 493 DKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQ 552

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
             ++A +V++ M      P + T +V+I+ LC    V D+  L++ M + G  P  ET  
Sbjct: 553 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCN 612

Query: 449 KLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            L     K GR D+ + L E+M     EP
Sbjct: 613 TLIGGYCKSGRADLARKLLEEMTEAGLEP 641



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 161/352 (45%), Gaps = 16/352 (4%)

Query: 80  AFCFFKWAEKQQNYEHSVR---------AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-- 128
             C  K  E+ +   H +R          Y+S+I+ L K  Q    + L   +    +  
Sbjct: 298 GLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA 357

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            N  T+  +   YA + ++ +A   F+++   G + +LA +  L+   CK+    +  E+
Sbjct: 358 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 417

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            + M  + F P   T S +L G  +  +  RA ++F  M   GC  D + Y ++V+ + +
Sbjct: 418 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 477

Query: 248 AGRVDEALGIVKSMDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           A + ++AL +++ +     R   P+S     LV +     R +DA     +M + G  A 
Sbjct: 478 ASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAA 537

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V+ YN L+    +  ++    +V + M S G AP   T N++++ L    + D+AY + +
Sbjct: 538 VSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQ 597

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           RM KL C  D +T   +I  +C+ G  + A K+ + M      P+  T  +L
Sbjct: 598 RMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C P+  TYGI++     AG +D A+ +++ M S      + +++ L+       R+ +A+
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEAL 64

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           + F  M K+    DV  Y AL+ A CKA KF     +L++M ++G AP++ T + +++GL
Sbjct: 65  EHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123

Query: 351 IGRGETDEAYRVFRRMIKLCEADADT-YTMMIKMFCQG-GELEKAFKVWKYMKLKRFIPS 408
              G  ++A+RV   +I+    ++D  +  +I+  C     +E A KV   +  K F P+
Sbjct: 124 CKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPT 183

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           +  F+++ING C    +  +  LLE MIEKG  P+  TF  L   L K  R    + L E
Sbjct: 184 VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLE 243

Query: 469 KM 470
           KM
Sbjct: 244 KM 245



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 366 MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           M ++C  +  TY ++I+ F   G+L+ A ++ + MK   F  +    + L+ GLCD G V
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            ++      M  K   P   T+  L   L K G+ D  + +  +M
Sbjct: 61  VEALEHFRAM-AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREM 104


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 166/334 (49%), Gaps = 2/334 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           LV+ MR   + +V T+  ++R   +    +EA++    M   G   +   +N ++   CK
Sbjct: 246 LVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 305

Query: 179 SKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
              V++A E+  D +   F+PD  TY  L+ G   + ++ RA E+F E    G  PDIV 
Sbjct: 306 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVV 365

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  +V  LC  G +  AL ++  M    C P    Y+++++       I DA     +  
Sbjct: 366 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 425

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G L DV  +N LI  +CK  K  +  ++++ M   G+AP++ T N +LNGL   G+ +
Sbjct: 426 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 485

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E    F+ MI K C  +  TY ++I+ FC+  ++E+A KV   M  +   P   +F+ LI
Sbjct: 486 EVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI 545

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            G C  G +  + +L + + EKG   + +TF  L
Sbjct: 546 YGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTL 579



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 179/354 (50%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I+   KI   Q   +L+ +A+    + +  T+C ++        VE A+  FN  Q
Sbjct: 296 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 355

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G+  ++  +N L+  LC    +  A ++ + M +    PD +TY+I++ G  K  N+ 
Sbjct: 356 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 415

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  + +  G  PD+ T+  ++D  CK  ++D AL +V+ M      P +  Y+ ++
Sbjct: 416 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 475

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +      ++ +  +TF EM   G   +   YN LI  FC++NK +   +V+  M+ +G+ 
Sbjct: 476 NGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 535

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P++ + N ++ G    G+ + AY +F+++  K   A ADT+  +I  F     +  A K+
Sbjct: 536 PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKI 595

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +  M  K      +T+ VLI+G C    V  + + L +MI+KG  PS  TFG++
Sbjct: 596 FDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 649



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 183/415 (44%), Gaps = 24/415 (5%)

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
           P I   +L    + G +A+C          + H  R                 ++D    
Sbjct: 139 PHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQ----------------LFD--QM 180

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           + T    N+  F  ++    +   V EA      + + G++ NL  +N  +  LC++  +
Sbjct: 181 LHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRL 240

Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
            +A  + D M+   +PD  TY+ L+ G  K      A    R M++ GC PD  TY  ++
Sbjct: 241 PEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 300

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D  CK   V EA  ++K        P    Y  L++    E  +E A++ F E +  GI 
Sbjct: 301 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIK 360

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+ +YN+L+   C      +  +V+ +M  +G  P+ +T NI++NGL   G   +A  V
Sbjct: 361 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 420

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               I K    D  T+  +I  +C+  +L+ A ++ + M      P   T++ ++NGLC 
Sbjct: 421 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 480

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL-----RKLLIKEGREDVLKFLQEKMN 471
            G V++     ++MI KG  P+  T+  L     R   ++E  + ++K  QE ++
Sbjct: 481 AGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 535



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 2/296 (0%)

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
            A+   N M + G   ++  +N +++ LCK  N+  A  +  D +   ++PD  T++ L+
Sbjct: 381 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 440

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K   L  A ++   M + G  PD +TY  +++ LCKAG+V+E     + M    C 
Sbjct: 441 DGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH 500

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++L+  +   N++E+A    ++M + G+  D   +N LI  FC+    +  Y +
Sbjct: 501 PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLL 560

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + +  KG +  + T N ++    G+     A ++F  M+ K   AD+ TY ++I   C+
Sbjct: 561 FQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCK 620

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              +++A+     M  K FIPSM TF  +IN L     V  +  ++  M++ G+ P
Sbjct: 621 TANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 164/401 (40%), Gaps = 69/401 (17%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +R YAR  ++ +AV  F  M  +       A+N ++ AL  +    +A +++  M    +
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 198 -PDSKTYSILLEGW--GKDPN--------LPR---------------------AREIFRE 225
            PD  T++I L  +     P+        LP                      AR++F +
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 179

Query: 226 MVDTGCNPDIV-----------------------------------TYGIMVDVLCKAGR 250
           M+ T   P++                                    TY I +  LC+AGR
Sbjct: 180 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 239

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           + EA+ +V  M +    P    Y+ L+     ++  ++A+     M   G L D   YN 
Sbjct: 240 LPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNT 298

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKL 369
           +I  +CK +  +    +LKD   KG  P+  T   ++NGL   G+ + A  +F     K 
Sbjct: 299 IIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKG 358

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            + D   Y  ++K  C  G +  A +V   M  +   P + T++++INGLC  G +SD+ 
Sbjct: 359 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 418

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V++ D I KG  P   TF  L     K  + D    L E+M
Sbjct: 419 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 459



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++  + R  K+EEA      M + G+  +  +FN L+   C++ ++  A  +F
Sbjct: 502 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 561

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             ++++ +   + T++ L+  +    N+  A +IF EM+  G   D  TY +++D  CK 
Sbjct: 562 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 621

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
             VD A   +  M      P+   +  ++++  V +R+  AV     M K G++ +V
Sbjct: 622 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 678



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 4/226 (1%)

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF-IYSVLVHTYGVENRIEDAVDTF 293
           +  Y  ++  L  AGRVD     V S  S +   T   +Y   +  Y    R+ DAVD F
Sbjct: 17  VPAYCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAF 76

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M+          YNA++ A   A      ++V   M + GV+P+  T  I L      
Sbjct: 77  ERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLT 136

Query: 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
                A R+ R    L    A  Y  ++      G    A +++  M      P++  F+
Sbjct: 137 ARPHIALRLLR---ALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN 193

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +++ LC +G V ++ +LL  +I++G+  +  T+    + L + GR
Sbjct: 194 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 239


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 188/372 (50%), Gaps = 3/372 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  + ++  Y  ++  L K     + ++L+N M   ++  +V  F  I+    + + V+
Sbjct: 142 QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVD 201

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           +A+  F  M+  G+  N+  ++ L+S LC       A ++  D ++ +  P+  T++ L+
Sbjct: 202 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 261

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+     A ++  +M+    +PDI TY  +++  C   R+D+A  + + M S  C 
Sbjct: 262 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 321

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+  +    R+ED  + F EM   G++ D   Y  LI          N  +V
Sbjct: 322 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 381

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S GV P+  T +I+L+GL   G+ ++A  VF  M K   + D   YT MI+  C+
Sbjct: 382 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 441

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++  + ++  + LK   P++ T++ +I+GLC K ++ ++  LL+ M E G  P   T
Sbjct: 442 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT 501

Query: 447 FGKLRKLLIKEG 458
           +  L +  +++G
Sbjct: 502 YNTLIRAHLRDG 513



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 2/307 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M K G   ++   + LL+  C  K +  A  + D M +  + PD+ T++ L+ G      
Sbjct: 70  MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 129

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A  +   MV  GC P++VTYG++V+ LCK G +D A  ++  M++        I++ 
Sbjct: 130 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 189

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++ +      ++DA++ F EME  GI  +V  Y++LI   C   ++ +  ++L DM  K 
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAF 394
           + PN  T N +++  +  G+  EA ++   MIK   + D  TY  +I  FC    L+KA 
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 309

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +++++M  K   P + T++ LI G C    V D   L  +M  +G+     T+  L + L
Sbjct: 310 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 369

Query: 455 IKEGRED 461
             +G  D
Sbjct: 370 FHDGDCD 376



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 172/369 (46%), Gaps = 5/369 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLV---NAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           S+  ++ ++ ++AK++++ ++  L      M+     ++ T   ++  Y   +++ +AV 
Sbjct: 41  SIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVA 100

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             + M + G   +   F  L+  L       +A  + D M  R   P+  TY +++ G  
Sbjct: 101 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 160

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K  ++  A  +  +M       D+V +  ++D LCK   VD+AL + K M++   RP   
Sbjct: 161 KRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 220

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L+       R  DA     +M +  I  ++  +NALI AF K  KF    ++  DM
Sbjct: 221 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 280

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
             + + P+  T N ++NG       D+A ++F  M+ K C  D DTY  +IK FC+   +
Sbjct: 281 IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRV 340

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E   ++++ M  +  +    T++ LI GL   G   ++  + + M+  G+ P   T+  L
Sbjct: 341 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 400

Query: 451 RKLLIKEGR 459
              L   G+
Sbjct: 401 LDGLCNNGK 409



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 174/358 (48%), Gaps = 7/358 (1%)

Query: 68  DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           D L K+R+    A   FK  E  +    +V  Y S+I  L    ++     L++ M  K+
Sbjct: 192 DSLCKYRHVDD-ALNLFKEME-TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 128 M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +  N+ TF  ++  + +  K  EA    + M K  +  ++  +N L++  C    + KA+
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 309

Query: 187 EIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           ++F+ M  KD F PD  TY+ L++G+ K   +    E+FREM   G   D VTY  ++  
Sbjct: 310 QMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 368

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L   G  D A  + K M S    P    YS+L+       ++E A++ F  M+K+ I  D
Sbjct: 369 LFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 428

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           + +Y  +I   CKA K  + + +   ++ KGV PN  T N +++GL  +    EAY + +
Sbjct: 429 IYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 488

Query: 365 RMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +M +     D+ TY  +I+   + G+   + ++ + M+  RF+    T  ++ N L D
Sbjct: 489 KMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHD 546



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    ++++A   F  M       +L  +N L+   CKSK V    E+F
Sbjct: 288 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 347

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + D+ TY+ L++G   D +   A+++F++MV  G  PDI+TY I++D LC  
Sbjct: 348 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 407

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++AL +   M  +  +   +IY+ ++       +++D  D F  +   G+  +V  Y
Sbjct: 408 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 467

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I   C     +  Y +LK M   G  P+S T N ++   +  G+   +  + R M +
Sbjct: 468 NTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM-R 526

Query: 369 LCE--ADADTYTMMIKMFCQGGELEKAF 394
            C    DA T  ++  M    G L+K+F
Sbjct: 527 SCRFVGDASTIGLVANML-HDGRLDKSF 553



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 3/253 (1%)

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE--ALGIVKSMDSTVCR 267
           WGKD  L  A  +F  MV +   P I  +  ++  + K  + D   +L ++  M      
Sbjct: 17  WGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYE 76

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P+    S L++ Y    RI DAV    +M + G   D   +  LI      NK      +
Sbjct: 77  PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 136

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
           +  M  +G  PN  T  +++NGL  RG+ D A+ +  +M     EAD   +  +I   C+
Sbjct: 137 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 196

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              ++ A  ++K M+ K   P++ T+S LI+ LC  G  SD+  LL DMIEK I P+  T
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 447 FGKLRKLLIKEGR 459
           F  L    +KEG+
Sbjct: 257 FNALIDAFVKEGK 269



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 137/331 (41%), Gaps = 33/331 (9%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           + +  K+++A+  F  M K     ++  FN LLSA+ K K        FD +        
Sbjct: 17  WGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKK-------FDLV-------- 61

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
               I L   GK             M+  G  P IVT   +++  C   R+ +A+ +V  
Sbjct: 62  ----ISLALLGK-------------MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 104

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M     RP +  ++ L+H   + N+  +AV     M + G   ++  Y  ++   CK   
Sbjct: 105 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 164

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTM 379
               + +L  M +  +  +    N I++ L      D+A  +F+ M  K    +  TY+ 
Sbjct: 165 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 224

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C  G    A ++   M  K+  P++ TF+ LI+    +G   ++  L +DMI++ 
Sbjct: 225 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 284

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I P   T+  L        R D  K + E M
Sbjct: 285 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 315


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 6/340 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++R   R   +  A    ++M + G   +   FN L+   C+++ +  AQ++FD M
Sbjct: 131 TYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKM 190

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R F  D+ +Y+ L+EG+ +   +  A E+FRE+      PD+ T+  +V  LC A R 
Sbjct: 191 PLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGLCDARRG 246

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +E L +++ M     RP +  Y+ LV  +  E + E+A     EM  NG++       A+
Sbjct: 247 EEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAV 306

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           + A+C+  +     RV + M  KG  PN  T N ++ G    G+  +A  +  +M +   
Sbjct: 307 VNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGV 366

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D  TY ++I+  C  G +E AF++ + M+        +T++VLI+ LC  G V ++C 
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACS 426

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L + +  +GIRP+  TF  +   L K G+ DV     EKM
Sbjct: 427 LFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKM 466



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 5/371 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +     +Y ++IE   +  +     +L   +    M    T   +++     ++ EE 
Sbjct: 193 RGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMY---THAALVKGLCDARRGEEG 249

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +Y    M++ G      A+  L+   C+ +   +A+++ + M D   +P + T + ++  
Sbjct: 250 LYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNA 309

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + ++  +  A  +F  M   GC P++ TY  MV   C  G+V +A+ ++  M      P 
Sbjct: 310 YCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPD 369

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y++L+    ++  IE A      ME NG+ AD   YN LI A CK  K      +  
Sbjct: 370 VVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFD 429

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            +  +G+ PNS T N ++NGL   G+ D A     +M+   C  D  TY+  I+  C+  
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTK 489

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
              +       M  K   PS   ++++I+ L  +     +  +   M+  G  P   T+ 
Sbjct: 490 GSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYT 549

Query: 449 KLRKLLIKEGR 459
              +    EGR
Sbjct: 550 TSVRAYCNEGR 560



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 172/430 (40%), Gaps = 54/430 (12%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K +  E +V  Y++M++    + +      L++ MR   +  +V T+ +++R       +
Sbjct: 327 KLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHI 386

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E A     +M+  G+  +   +N L+ ALCK+  V +A  +FD ++ R I P+S T++ +
Sbjct: 387 ESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTV 446

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM----- 261
           + G  K      A     +MV  GC PD  TY   ++ LCK     E L  +  M     
Sbjct: 447 INGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDV 506

Query: 262 -DSTV-----------------------------CRPTSFIYSVLVHTYGVENRIEDAVD 291
             STV                             C P    Y+  V  Y  E R+ +A +
Sbjct: 507 KPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAEN 566

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL---- 347
             +EM+K GI+ D   YN LI       K  +   +LK M      PN  T  I+L    
Sbjct: 567 VVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLL 626

Query: 348 ------------NGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAF 394
                         +    E  + + +F  M K    + A  Y  +++ F +   L++  
Sbjct: 627 QRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVT 686

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +  +MK      +   ++ L+N  C   +  D+  LL  MI  G  P+  ++  L    
Sbjct: 687 SLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGF 746

Query: 455 IKEGREDVLK 464
             EG+ D  K
Sbjct: 747 TAEGQADRAK 756



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/412 (18%), Positives = 150/412 (36%), Gaps = 89/412 (21%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +I++L K  +      L + +  + +  N  TF  ++    +  K + A      M 
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMV 467

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G   +   ++  +  LCK+K  R+     D M  + + P +  Y+I+++   K+ N  
Sbjct: 468 SAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYG 527

Query: 218 RAREIFREMVDTGCNPDIVTY--------------------------GIMVDVLC----- 246
            A  I+ +MV  GC+PD+VTY                          GI+VD +      
Sbjct: 528 LATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLI 587

Query: 247 ----KAGRVDEALGIVKSMDSTVCRPTSFI------------------------------ 272
                 G+ D A+ I+K M      P  F                               
Sbjct: 588 DGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIEL 647

Query: 273 ---------------------YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
                                Y  ++  +  E R+++       M+++ +  +  +Y +L
Sbjct: 648 ADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSL 707

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           +  FCK   + + + +L  M   G  PN  +   +L+G    G+ D A  +FR +  K  
Sbjct: 708 VNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEY 767

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
             D   + ++I    + G  +    +   ++  +  PS  T+++L   L  +
Sbjct: 768 NTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEELSTR 819


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 224/472 (47%), Gaps = 48/472 (10%)

Query: 17  SFLRRYNSSEP-------STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDV 69
           S LR  + ++P       +  A+D A S   + +      ++ AL+     +SP IV  +
Sbjct: 6   SLLREISRAKPPWKQHFHTYSAVDFAISNEVLTIIDSVNPIEPALESKVPFLSPSIVTYI 65

Query: 70  LEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRM 128
           ++   N+  L F FF WA K +     V +++ +I+ L K   +++ W ++  + R    
Sbjct: 66  IKNPPNS-LLGFRFFIWASKFRRLRSWV-SHNMIIDMLIKDNGFELYWQVLKEIKRCGFS 123

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           ++ + F ++++ YA++  +E+AV +F +M+ +    ++  +N +L  + + + V  A  I
Sbjct: 124 ISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGI 183

Query: 189 FDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV-------------------- 227
           ++ M K   +P+  T+SIL++G  K      A ++F EM                     
Sbjct: 184 YNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQ 243

Query: 228 ---------------DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                          D GC PD VTY  ++   CK GRVDEALG++K  +          
Sbjct: 244 AQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQG 303

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS L+       R EDA   + +M ++ I  DV +Y  ++    KA KFK+  R+L +M 
Sbjct: 304 YSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMT 363

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
            +G+ P++   N ++ G    G  DEA  +   + K  C + A TYT++I   C+ G + 
Sbjct: 364 ERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVG 423

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            A +++  M+     PS+ TF+ LI+G C  G +  + +L   M E G  PS
Sbjct: 424 DAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-EIGRNPS 474



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 180/382 (47%), Gaps = 16/382 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  +  +I+ + K  + Q    + + M  +R+L N  T+ II+    + QK + A   F
Sbjct: 195 NIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLF 254

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M+ +G   +   +N LL   CK   V +A  +     KDR++ D + YS L++G  + 
Sbjct: 255 IAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRA 314

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A+  +R+M +    PD++ Y IM+  L KAG+  +AL ++  M      P +  Y
Sbjct: 315 RRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCY 374

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y     +++A    LE+ KN   +    Y  LI   C++    +  ++  +M  
Sbjct: 375 NALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEK 434

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM---------IKLCEA-----DADTYTM 379
            G  P+  T N +++G    G  ++A  +F +M         ++L +      D  +   
Sbjct: 435 HGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQT 494

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           M++  C  G + KA+ +   +    F P++ T+++LI+G C  G ++ +  L +++  KG
Sbjct: 495 MVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKG 554

Query: 440 IRPSGETFGKLRKLLIKEGRED 461
           + P   T+G L   L+   RE+
Sbjct: 555 LSPDSVTYGTLINGLLSANREE 576



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 193/439 (43%), Gaps = 63/439 (14%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY---QIMWDLVNAMRTKRMLNVETFCI 136
           A    K+ EK + Y    + Y  +I+ L + R++   Q+ +  +     K   +V  + I
Sbjct: 285 ALGLLKYFEKDR-YVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKP--DVILYTI 341

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDCMKDR 195
           +M+  ++  K ++A+   N M + G+  +   +N L+   C    + +A+ +  +  K+ 
Sbjct: 342 MMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKND 401

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
               + TY+IL+ G  +   +  A++IF EM   GC P +VT+  ++D  CKAG +++A 
Sbjct: 402 CFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQ 461

Query: 256 GIVKSMDSTVCRPTSFIYSV------LVHTYGVENRIEDAVDT---------FLEMEKNG 300
            +   M+  + R  S    +      ++ T  ++  +E   D+          +++  +G
Sbjct: 462 LLFYKME--IGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSG 519

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              ++  YN LI  FCKA      +++ K++  KG++P+S T   ++NGL+     ++A+
Sbjct: 520 FAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAF 579

Query: 361 RVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS----------- 408
            V  +++K  C    + Y   +   C+  ++  AF +W  +K  R IP            
Sbjct: 580 TVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLW--LKYLRSIPGRDSEVLKSVEE 637

Query: 409 -------------------------MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                                    +  +++ + GLC  G + ++  +   + E  +  +
Sbjct: 638 NFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVT 697

Query: 444 GETFGKLRKLLIKEGREDV 462
             +  KL   L+K G  D+
Sbjct: 698 PPSCVKLIYRLLKVGNLDL 716



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 1/258 (0%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F   +  +++L++ + K   + +A E F  M D  C PD+ TY  ++ V+ +   V  AL
Sbjct: 122 FSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLAL 181

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           GI   M    C P    +S+L+       + ++A+  F EM +  IL +   Y  +I   
Sbjct: 182 GIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGL 241

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADA 374
           C+A K    YR+   M   G  P+S T N +L+G    G  DEA  + +   K     D 
Sbjct: 242 CQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDK 301

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y+ +I    +    E A   ++ M      P +  +++++ GL   G   D+  LL +
Sbjct: 302 QGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNE 361

Query: 435 MIEKGIRPSGETFGKLRK 452
           M E+G+ P    +  L K
Sbjct: 362 MTERGLVPDTHCYNALIK 379


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 176/355 (49%), Gaps = 3/355 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  L K     +  DL   M  + +  +V  + I++    +    ++A+  FN M
Sbjct: 241 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G+  ++  ++ L+  LC         ++   M  R  IPD  T+S L++ + K+  L
Sbjct: 301 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 360

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+E++ EM+  G  PD +TY  ++D  CK   + EA  +   M S  C P    YS+L
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +++Y    R++D +  F E+   G++ +   YN L+  FC++ K      + ++M S+GV
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T  I+L+GL   GE ++A  +F +M K         Y ++I   C   +++ A+ 
Sbjct: 481 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 540

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++  +  K   P + T++V+I GLC KG +S++ +L   M E G  P   T+  L
Sbjct: 541 LFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 595



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 166/340 (48%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++  +    +V EAV   + M +     +L   + L++ LC    V +A  + D M
Sbjct: 171 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 230

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +  F PD  TY  +L    K  N   A ++FR+M +      +V Y I++D LCK G  
Sbjct: 231 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSF 290

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+AL +   M+    +     YS L+     + + +D      EM    I+ DV  ++AL
Sbjct: 291 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 350

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  F K  K      +  +M ++G+AP++ T N +++G        EA ++F  M+ K C
Sbjct: 351 IDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC 410

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D  TY+++I  +C+   ++   ++++ +  K  IP+  T++ L+ G C  G ++ +  
Sbjct: 411 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 470

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L ++M+ +G+ PS  T+G L   L   G  +    + EKM
Sbjct: 471 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 171/340 (50%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++ +  +      A+  F  M++  +  ++  ++ ++ +LCK  +   A  +F+ M
Sbjct: 241 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           + + I  D  TYS L+ G   D       ++ REM+     PD+VT+  ++DV  K G++
Sbjct: 301 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 360

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +   M +    P +  Y+ L+  +  EN + +A   F  M   G   D+  Y+ L
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I ++CKA +  +  R+ ++++SKG+ PN+ T N ++ G    G+ + A  +F+ M+ +  
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                TY +++   C  GEL KA ++++ M+  R    +  ++++I+G+C+   V D+  
Sbjct: 481 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 540

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L   + +KG++P   T+  +   L K+G       L  KM
Sbjct: 541 LFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 580



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 186/394 (47%), Gaps = 41/394 (10%)

Query: 69  VLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           VL +   +G   LA   F+  E ++N + SV  Y  +I+SL K   +     L N M  K
Sbjct: 245 VLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 303

Query: 127 RM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
            +  +V T+  ++       K ++       M    +  ++  F+ L+    K   + +A
Sbjct: 304 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 363

Query: 186 QEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           +E+++ M  R I PD+ TY+ L++G+ K+  L  A ++F  MV  GC PDIVTY I+++ 
Sbjct: 364 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 423

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH-------------------------- 278
            CKA RVD+ + + + + S    P +  Y+ LV                           
Sbjct: 424 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPS 483

Query: 279 --TYGV-------ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             TYG+          +  A++ F +M+K+ +   + +YN +I   C A+K  + + +  
Sbjct: 484 VVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFC 543

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG 388
            ++ KGV P+  T N+++ GL  +G   EA  +FR+M +  C  D  TY ++I+    G 
Sbjct: 544 SLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGS 603

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            L  + ++ + MK+  F     T  ++I+ L D+
Sbjct: 604 GLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR 637



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 6/308 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           +N    V  + ++I+   K  +     +L N M T+ +  +  T+  ++  + +   + E
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHE 397

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A   F++M   G   ++  ++ L+++ CK+K V     +F  +  +  IP++ TY+ L+ 
Sbjct: 398 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVL 457

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ +   L  A+E+F+EMV  G  P +VTYGI++D LC  G +++AL I + M  +    
Sbjct: 458 GFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 517

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
              IY++++H     ++++DA   F  +   G+  DV  YN +IG  CK         + 
Sbjct: 518 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 577

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQ 386
           + M   G  P+  T NI++   +G      +  +   M K+C   AD+ T  M+I M   
Sbjct: 578 RKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM-KVCGFSADSSTIKMVIDMLSD 636

Query: 387 GGELEKAF 394
              L+K+F
Sbjct: 637 -RRLDKSF 643



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 42/286 (14%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD---------- 262
           D  +  A ++F  M+ +   P  + +  +   + +  + D  LG  K M+          
Sbjct: 77  DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 136

Query: 263 -----STVCR--------------------PTSFIYSVLVHTYGVENRIEDA---VDTFL 294
                +  CR                    P +  +S LV+ + +E R+ +A   VD  +
Sbjct: 137 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 196

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           EM++     D+   + LI   C   +      ++  M   G  P+  T   +LN L   G
Sbjct: 197 EMKQR---PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 253

Query: 355 ETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
            +  A  +FR+M  +  +A    Y+++I   C+ G  + A  ++  M++K     + T+S
Sbjct: 254 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYS 313

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            LI GLC+ G   D   +L +MI + I P   TF  L  + +KEG+
Sbjct: 314 SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 5/193 (2%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           V+ ++ DA+D F  M ++  L     +N L  A  +  ++  V    K M   G+  +  
Sbjct: 76  VDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 135

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T  I++N    + +   A+ V  R  KL  E D  T++ ++  FC  G + +A  +   M
Sbjct: 136 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 195

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
              +  P + T S LINGLC KG VS++ VL++ M+E G +P   T+G +   L K G  
Sbjct: 196 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 255

Query: 461 ----DVLKFLQEK 469
               D+ + ++E+
Sbjct: 256 ALALDLFRKMEER 268



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +V++A+ + +SM  +   PT   ++ L        + +  +     ME NGI  D+    
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            +I  +C+  K    + VL      G  P++ T + ++NG    G   EA  +  RM+++
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 370 CE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            +  D  T + +I   C  G + +A  +   M    F P   T+  ++N LC  G  + +
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 258

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             L   M E+ I+ S   +  +   L K+G  +D L    E
Sbjct: 259 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 299


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 200/426 (46%), Gaps = 45/426 (10%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK 85
           +P  E     +++ K    S    ++ AL Q  + ++ ++V DVL++ R+    A+ FF 
Sbjct: 81  DPDGETALEVQNLLKTYRDSSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFN 140

Query: 86  WAEK---QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKY 141
           WA +   +  Y      ++ +++ L ++R++  M  L + M + K ++N  TF +++ +Y
Sbjct: 141 WASRCGIESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRY 200

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
           A   K EEA                                  A +IF   K  +I   +
Sbjct: 201 AAAHKTEEA----------------------------------AVKIFYKRKGAWI---R 223

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           + +++L GW    +L  A+  + +++ + C PD  TYGI ++ L KAG++  A+ + ++M
Sbjct: 224 SMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAM 283

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C P   I + ++     + RI +A++   EM +     DVA YN+LI   CK  +F
Sbjct: 284 WEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRF 343

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMM 380
           + VY +L DM  KG  PN+RT   +L       + +E   +  RM +  C  ++D Y ++
Sbjct: 344 EKVYELLDDMEQKGCLPNARTYGYLLKST---KKPEEVPGILERMERNGCRMNSDCYNLI 400

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +K++   G   K       M+     P   T++++I+GL DKG + D+    + M   G+
Sbjct: 401 LKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQMTLMGM 460

Query: 441 RPSGET 446
            P   T
Sbjct: 461 VPEPRT 466



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 4/227 (1%)

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +++G +P    +  ++D+L +  R  E   +   M           + VL++ Y   ++ 
Sbjct: 147 IESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKT 206

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           E+A        K   +  +   N ++  +C     +   R   D+ +    P+  T  I 
Sbjct: 207 EEAAVKIFYKRKGAWIRSM---NVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIF 263

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +N L   G+   A ++F+ M  K C  D      +I   C    + +A +V + M  +  
Sbjct: 264 INSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDC 323

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
            P + T++ LI  LC          LL+DM +KG  P+  T+G L K
Sbjct: 324 QPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLK 370



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P   +++ ++   G   R  +    F EM K   L +   +  L+  +  A+K +    V
Sbjct: 153 PGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAA-V 211

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
                 KG     R+ N+ILNG    G   EA R +  +I   C+ D  TY + I    +
Sbjct: 212 KIFYKRKGAW--IRSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTK 269

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+L  A K+++ M  K   P +   + +I+ LC K  + ++  +L +M E+  +P   T
Sbjct: 270 AGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVAT 329

Query: 447 FGKLRKLLIKEGR-EDVLKFLQE 468
           +  L K L K  R E V + L +
Sbjct: 330 YNSLIKHLCKIQRFEKVYELLDD 352


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 188/378 (49%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK+ ++ ++  L   M+   +  N  T+ I++  + R  ++  A+   
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVL 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K + +A  + D M +  + PD+ T++ L+ G    
Sbjct: 140 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH 199

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+ TYG +V+ LCK G +D AL ++K M+         IY
Sbjct: 200 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIY 259

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        ++DA D F +ME  GI  DV  YN+LI   C   ++ +  R+L DM  
Sbjct: 260 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE 319

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T N +++     G+  EA ++F  MI +  + +  TY  +I  FC    L++
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 379

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M  K  +P + T++ LI G C    V +   L  +M ++G+  +  T+  L +
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G  D+ + + +KM
Sbjct: 440 GLFQAGDCDMAQKIFKKM 457



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 183/363 (50%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y +++  L K     +   L+  M   ++  NV  +  I+    + + +++A   FN M
Sbjct: 223 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           +  G+  ++  +N L+S LC       A  +   M +R I P+  T++ L++ + K+  L
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++F EM+    +P+IVTY  +++  C   R+DEA  I   M S  C P    Y+ L
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+E+ ++ F EM + G++ +   YN LI    +A       ++ K M S GV
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T +I+L+GL   G+ ++A  VF  + K   E +  TY +MI+  C+ G++E  + 
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWD 522

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P++  ++ +I+G C KG+  ++  L  +M E G  P    +  L +  +
Sbjct: 523 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 582

Query: 456 KEG 458
           ++G
Sbjct: 583 RDG 585



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 181/384 (47%), Gaps = 5/384 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           LA    K  EK +  E +V  Y+++I+ L K +     +DL N M TK +  +V T+  +
Sbjct: 239 LALSLLKKMEKGK-IEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSL 297

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +       +  +A    + M +  +  N+  FN L+ A  K   + +A+++FD M  R I
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 357

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  TY+ L+ G+     L  A++IF  MV   C PD+VTY  ++   CKA RV+E + 
Sbjct: 358 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGME 417

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           + + M        +  Y+ L+         + A   F +M  +G+  D+  Y+ L+   C
Sbjct: 418 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 477

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
           K  K +    V + +    + PN  T NI++ G+   G+ ++ + +F  + +K  + +  
Sbjct: 478 KYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI 537

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            YT MI  FC+ G  E+A  +++ MK    +P    ++ LI      G  + S  L+++M
Sbjct: 538 IYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM 597

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR 459
              G      T   +  +L  +GR
Sbjct: 598 RSCGFVGDASTISMVINML-HDGR 620



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 155/303 (51%), Gaps = 6/303 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  ++S+I++ AK  +      L + M  + +  N+ T+  ++  +    +++EA   F
Sbjct: 325 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF 384

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
            +M       ++  +N L+   CK+K V +  E+F  M  R  + ++ TY+ L++G  + 
Sbjct: 385 TLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 444

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +   A++IF++MV  G  PDI+TY I++D LCK G++++AL + + +  +   P  + Y
Sbjct: 445 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTY 504

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++       ++ED  D F  +   G+  +V +Y  +I  FC+    +    + ++M  
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 564

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELE 391
            G  P+S   N ++   +  G+   +  + + M + C    DA T +M+I M    G LE
Sbjct: 565 DGTLPDSGCYNTLIRARLRDGDKAASAELIKEM-RSCGFVGDASTISMVINML-HDGRLE 622

Query: 392 KAF 394
           K++
Sbjct: 623 KSY 625



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 37/316 (11%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYS 204
           K+++AV  F  M K     ++  F+ LLSA+ K         + + M++  IP +  TYS
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILL  + +   LP A  +  +M+  G  PDIVT   +++  C   R+ EA+ +V      
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV------ 174

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                                     D  +EM   G   D   +N LI      NK    
Sbjct: 175 --------------------------DQMVEM---GYKPDTVTFNTLIHGLFLHNKASEA 205

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKM 383
             ++  M ++G  P+  T   ++NGL  RG+ D A  + ++M K   EA+   Y  +I  
Sbjct: 206 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDG 265

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            C+   ++ AF ++  M+ K   P + T++ LI+ LC+ G  SD+  LL DMIE+ I P+
Sbjct: 266 LCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPN 325

Query: 444 GETFGKLRKLLIKEGR 459
             TF  L     KEG+
Sbjct: 326 VVTFNSLIDAFAKEGK 341



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 269 TSFIYSVLVHTYGV-ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           TS+ Y   +   G+ E +++DAV  F EM K+     +  ++ L+ A  K NKF  V  +
Sbjct: 44  TSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISL 103

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQ 386
            + M + G+  N  T +I+LN    R +   A  V  +M+KL  E D  T + ++  +C 
Sbjct: 104 GEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH 163

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           G  + +A  +   M    + P   TF+ LI+GL      S++  L++ M+ +G +P   T
Sbjct: 164 GKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 223

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +G +   L K G  D+   L +KM
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKM 247


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 196/388 (50%), Gaps = 5/388 (1%)

Query: 61  VSPEIVEDVLE-KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +SP  V  VL  + R     AF FF+WA++Q  Y H+   +  M+  L+  R +     +
Sbjct: 90  LSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRV 149

Query: 120 VNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           V  M R       E F  +M  Y+R  K+  A+   ++MQK G   +++  N  ++ L  
Sbjct: 150 VRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVV 209

Query: 179 SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           +  V KA E  + M+   + PD  TY+ L++G      +  A E+   M+  GC PD ++
Sbjct: 210 AGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKIS 269

Query: 238 YGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           Y  ++  LCK  RV+E  G+++ M +     P    Y+VL+H        ++A++   E 
Sbjct: 270 YYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRES 329

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           E      D   Y+A++ +FC   +      ++ +M SKG  P+  T + +++G    GE 
Sbjct: 330 EGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGEL 389

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           D+A ++ + M K  C+ +  T+T ++   C+ G+  +A+++    + + + PS  T+SV+
Sbjct: 390 DQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVV 449

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           ++G   +G + +SC ++  M++KG  P+
Sbjct: 450 MHGFRREGKLKESCDVVVQMLQKGFFPT 477



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 161/361 (44%), Gaps = 51/361 (14%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMV 227
           F+ +LS L  ++    A+ +   M  R +   ++ ++ L+  + +   L  A  +   M 
Sbjct: 130 FDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQ 189

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC PDI    + V+VL  AGRVD+AL   + M      P  + Y+ L+       R+ 
Sbjct: 190 KDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVV 249

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNII 346
           DA++    M +NG   D   Y  ++   CK  + + V  +L+ M N  G+ P+  T N++
Sbjct: 250 DAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVL 309

Query: 347 LNGLIGRGETDEAYRVFR-------------------------RMI-----------KLC 370
           ++GL   G  DEA    R                         RM            K C
Sbjct: 310 IHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGC 369

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY+ ++  FC+ GEL++A K+ K+M      P+  T + L+NGLC  G  S++  
Sbjct: 370 QPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWE 429

Query: 431 LLEDMIEKGIRPSGETF-----GKLRKLLIKEGREDVLKFLQE-------KMNLLVKEPL 478
           LL    E+   PS  T+     G  R+  +KE  + V++ LQ+       ++NLL+   L
Sbjct: 430 LLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLI-HAL 488

Query: 479 C 479
           C
Sbjct: 489 C 489



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 160/352 (45%), Gaps = 37/352 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
           +Y++++  L K ++ + +  L+  MR    L  +  T+ +++   A+    +EA+     
Sbjct: 269 SYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRE 328

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
            +      +   ++ ++ + C +  + +A+EI   M  +   PD  TYS +++G+ +   
Sbjct: 329 SEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGE 388

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L +AR++ + M    C P+ VT+  +++ LCK G+  EA  ++   +     P+   YSV
Sbjct: 389 LDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSV 448

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H +  E +++++ D  ++M + G        N LI A CK  K       ++   SKG
Sbjct: 449 VMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKG 508

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
                                             C  +   +T +I  F + G+LE A  
Sbjct: 509 ----------------------------------CTINVVNFTTVIHGFSRQGDLESALS 534

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +   M L    P + T++V+++ L  KG + ++  L+E M+ +G+ P+  T+
Sbjct: 535 LMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTY 586



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 131/285 (45%), Gaps = 18/285 (6%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + +++  L K+ +    W+L+N    +     + T+ ++M  + R  K++E+      M 
Sbjct: 411 HTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQML 470

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G        N L+ ALCK +   +A++  + C       +   ++ ++ G+ +  +L 
Sbjct: 471 QKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLE 530

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  +M  +  +PD+VTY ++VD L K GR+ EA G+V+ M +    PT   Y  ++
Sbjct: 531 SALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVI 590

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAM---YNALIGAFCKANKFKNVYRVLKDMNSK 334
           H Y      E      L      +LA   M   YN ++   C   K    Y +L  +   
Sbjct: 591 HRY-----CEKGNLEDLLNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRT 645

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAY----RVFRRM----IKLCE 371
               +++TC+I++   + RG   +AY    R+FRR     +KLC+
Sbjct: 646 ASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQ 690


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 210/474 (44%), Gaps = 36/474 (7%)

Query: 14  GCISFLRRYNS-------SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIV 66
           GC+     YN+          S EALD  + ++K                 G R SP++V
Sbjct: 222 GCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAK----------------EGGRCSPDVV 265

Query: 67  E--DVLEKFRNAGTLA-FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
               V+  F   G ++  C       Q+  E  V  Y+S++++L K R       ++  M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 124 RTKRMLNVE----TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
             K    VE    T+  I+  Y+     +E+   F  M   G+   +  FN  +S+LCK 
Sbjct: 326 VDK---GVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKH 382

Query: 180 KNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
              + A+EIF  M  +  +PD  +YSILL G+  +        +F  M D G   +   +
Sbjct: 383 GRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCF 442

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I++    K G +DEA+ +   M     RP    YS L+  +    R+ DA++ F +M  
Sbjct: 443 NILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMIS 502

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETD 357
            G+  +  +Y++LI  FC          ++ +M SKG+  PN    + I++ L   G   
Sbjct: 503 IGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVM 562

Query: 358 EAYRVFRRMIKLCEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +A+ VF  +I + +     T+  +I  +C  G++EKAF V   M      P + T++ L+
Sbjct: 563 DAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLV 622

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +G C  G + D  +L  +M+ K ++P+  T+  +   L   GR    K +  +M
Sbjct: 623 SGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEM 676



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 192/405 (47%), Gaps = 41/405 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y  ++   A   ++  M +L ++M  K ++ N   F I++  +A+   ++EA+  F  M
Sbjct: 406 SYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEM 465

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           Q  GV  ++  ++ L+SA C+   +  A E F  M    + P++  Y  L+ G+    +L
Sbjct: 466 QGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDL 525

Query: 217 PRAREIFREMVDTGC-NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
            +A+E+  EM+  G   P+IV +  ++  LC  GRV +A  +   +     RPT   ++ 
Sbjct: 526 VKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNS 585

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y +  ++E A      M   GI  DV  YN L+  +CK+ K  +   + ++M  K 
Sbjct: 586 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKK 645

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAF 394
           V P + T +I+L+GL   G T  A ++F  MI    A D DTY +++K  C+    ++A 
Sbjct: 646 VKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAI 705

Query: 395 KVWKYM--------------------KLKR---------------FIPSMHTFSVLINGL 419
            ++  +                    K++R                +P++ T+ V+I+ L
Sbjct: 706 TLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNL 765

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             +G V ++  +   M + G  PS      + ++L+++G  D++K
Sbjct: 766 LKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG--DIVK 808



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 170/364 (46%), Gaps = 12/364 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQI----MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           SV  Y  +++   + R+  +       L+ A    R +   TF   ++     ++ +EAV
Sbjct: 155 SVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTF---LKCLCHAKRTDEAV 211

Query: 152 -YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK---DRFIPDSKTYSILL 207
               + M   G   N  ++N ++ +LC     ++A ++   M     R  PD  +++ ++
Sbjct: 212 DVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 271

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+ K   + +A  +  EMV  G  PD+VTY  +VD LCKA  +D+A  +++ M      
Sbjct: 272 HGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVE 331

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ ++H Y      +++   F +M   G++  +  +N+ + + CK  + K+   +
Sbjct: 332 PDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEI 391

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + M +KG  P+  + +I+L+G    G   +   +F  M  K   A+   + ++I    +
Sbjct: 392 FQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAK 451

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +++A  V+  M+ +   P + T+S LI+  C  G ++D+      MI  G+ P+   
Sbjct: 452 RGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVV 511

Query: 447 FGKL 450
           +  L
Sbjct: 512 YHSL 515



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 149/316 (47%), Gaps = 12/316 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + S+I SL    +     D+ N  +       + TF  ++  Y  V K+E+A    + M 
Sbjct: 548 FSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 607

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G+  ++  +N L+S  CKS  +     +F + +  +  P + TYSI+L+G        
Sbjct: 608 SVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTS 667

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+++F EM+D+G   DI TY I++  LC+    DEA+ +   + +  C+    I + ++
Sbjct: 668 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVI 727

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +      R E+A D F  +  +G++ +V+ Y  +I    K    +    +   M   G A
Sbjct: 728 NALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCA 787

Query: 338 PNSRTCNIILNGLIGRGETDEA-YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+SR  N I+  L+ +G+  +A Y + +    +   +A T ++++ +F   G        
Sbjct: 788 PSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKG-------- 839

Query: 397 WKYMKLKRFIPSMHTF 412
            K+ +  +F+P+ + F
Sbjct: 840 -KHREQIKFLPAKYQF 854



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 148/365 (40%), Gaps = 67/365 (18%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I R  A     ++A + F+ + + G   +  A NG L+AL ++                 
Sbjct: 80  IARVRAGTFSTDDAHHLFDELLRQGTPVHNPALNGFLAALARA----------------- 122

Query: 197 IPDSKTYSILLEGWGKDPNLPRA--REIFREMVDTGCNP-DIVTYGIMVD---------- 243
            PDS + S         P L  A    I RE       P  + TYGI++D          
Sbjct: 123 -PDSVSCS-------NGPALVLALFNRICREEAGPRVAPLSVHTYGILMDCCCRARRPDL 174

Query: 244 -------------------------VLCKAGRVDEALGI-VKSMDSTVCRPTSFIYSVLV 277
                                     LC A R DEA+ + +  M    C P +  Y+ ++
Sbjct: 175 GPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVI 234

Query: 278 HTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
            +   ++R ++A+D    M K G     DV  +N +I  F K  +      ++ +M  KG
Sbjct: 235 KSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKG 294

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           V P+  T N I++ L      D+A  V R+M+ K  E D  TYT +I  +   G  +++ 
Sbjct: 295 VEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESA 354

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K+++ M  K  IP + TF+  ++ LC  G   D+  + + M  KG  P   ++  L    
Sbjct: 355 KMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGY 414

Query: 455 IKEGR 459
             EGR
Sbjct: 415 ATEGR 419


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 210/431 (48%), Gaps = 18/431 (4%)

Query: 31  ALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
           A  A   + K+ L    V   T L+  G+    +I+ D ++ F   G + F         
Sbjct: 125 AFSALGKMFKLGLQPTHVTFGTLLN--GLCSKAKII-DAVKLFDEIGKMGF--------- 172

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
                S+  Y ++I+ L KI        L+  M  K    +V  +  ++    + ++  E
Sbjct: 173 ---APSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANE 229

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A+Y F+ M   G+  N+  ++ +L   C    + +A  +F  M  R  +P++ T++IL++
Sbjct: 230 AMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVD 289

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K+  +  AR +F  M + G  PD  TY  ++D  C   ++DEA  +   M      P
Sbjct: 290 GLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAP 349

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           +  +Y++L++ +    R+ +A     EM    +  D   Y+ L+  FC+A + +   ++ 
Sbjct: 350 SVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLF 409

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
           K+M S G+ P+S T +I+L+GL   G  DEA+R+ + M +   E     Y ++I+  C  
Sbjct: 410 KEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNF 469

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+LE A +++  + +K   PS+ T++V+I+GL  +G+ +++C +   M+  G  P+  T+
Sbjct: 470 GKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTY 529

Query: 448 GKLRKLLIKEG 458
               +  ++ G
Sbjct: 530 NVAIQGFLRNG 540



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 185/397 (46%), Gaps = 8/397 (2%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIR---VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           K + KI  ++  + L   +++ G +   V+   V D L K R A    + F +  +  Q 
Sbjct: 184 KGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD--QG 241

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
              +V  Y S++     + Q      L   M  +  M N  TF I++    +   + EA 
Sbjct: 242 IPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEAR 301

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGW 210
             F +M + GV  +   ++ L+   C    + +AQ++FD M  + F P  + Y+IL+ G 
Sbjct: 302 RVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGH 361

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  A+ +  EM D    PD VTY  ++   C+AGR   A  + K M S    P S
Sbjct: 362 CKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDS 421

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             YS+L+        +++A      M+++ I   + +YN LI   C   K +    +  +
Sbjct: 422 ITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSN 481

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           +  KG+ P+  T  ++++GL+  G ++EA  +FR+M+   C  ++ TY + I+ F + G+
Sbjct: 482 LFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGD 541

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
              A ++ + M  + F     TF +L++   +  I+S
Sbjct: 542 PSNAVRLIEEMVGRGFSADSSTFQMLLDLESNDEIIS 578



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 168/376 (44%), Gaps = 42/376 (11%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK------------- 180
           FC     Y  +  V +AV +FN +        +  FN LL +L K K             
Sbjct: 40  FC---SNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMD 96

Query: 181 ------NVRKAQEIFDCM-------------------KDRFIPDSKTYSILLEGWGKDPN 215
                 NV     + +C+                   K    P   T+  LL G      
Sbjct: 97  LSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAK 156

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A ++F E+   G  P ++TY  ++  LCK G    AL ++K M+   C+P    Y+ 
Sbjct: 157 IIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNT 216

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++ +   + R  +A+  F EM   GI  +V  Y++++  FC   +      + K M  + 
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAF 394
           V PN+ T  I+++GL   G   EA RVF  M +   E DA TY+ ++  +C   ++++A 
Sbjct: 277 VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQ 336

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K++  M  K F PS+  +++LING C    ++++  LL +M ++ + P   T+  L +  
Sbjct: 337 KLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGF 396

Query: 455 IKEGREDVLKFLQEKM 470
            + GR  V + L ++M
Sbjct: 397 CQAGRPQVAQKLFKEM 412



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 4/215 (1%)

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
             +  +T   P+S         Y   + + DAV +F ++     L  V ++N L+G+  K
Sbjct: 22  TSTASTTNISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVK 81

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI--GRGETDEAYRVFRRMIKL-CEADA 374
              +  V  + K M+   + PN  T  I++N L    R     A+    +M KL  +   
Sbjct: 82  KKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTH 141

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            T+  ++   C   ++  A K++  +    F PS+ T++ +I GLC  G  +++  LL+ 
Sbjct: 142 VTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKK 201

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           M EKG +P    +  +   L K+ R  + + F  E
Sbjct: 202 MEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSE 236


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 203/422 (48%), Gaps = 38/422 (9%)

Query: 93  YEHSVRA---YHSMIESLAKIRQYQ-----IMWDLVNAMRTKRMLN-------------- 130
           + H+ RA   +H+++    + R        +  DL   +R  R L               
Sbjct: 77  WHHAPRALLFFHALLRLPERSRDLSPCTVDLALDLAARLRHPRQLTSSILALFPRHGLAF 136

Query: 131 -VETFCIIMRKYARVQKVEE-AVYTF-NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
              TF I+  ++A   +  + A+  F ++ + +G+ Q+L  FN LL AL KS+   KA  
Sbjct: 137 TPRTFPILFERFAMSHRRPDLAIRLFLSLHRSHGIAQDLPLFNSLLDALVKSRRASKAAS 196

Query: 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +   ++ RF PD+ TY+ L +GW +  +  RA +I R+MV++G  P   TY I++    +
Sbjct: 197 LVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFR 256

Query: 248 AGRVDEALGIVKSM-----DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           +G++  A      M     +   C+P    Y+ ++H  GV  +++ A   F EM   G  
Sbjct: 257 SGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCK 316

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
              A YNALI   CK    ++   V  DM  KG  PN  T  +++ GL   G+   A ++
Sbjct: 317 PSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKL 376

Query: 363 FRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLC 420
             RM  + CE +  TY ++I+   + GE+EK   +++ M K +  +P+  T++++I+ + 
Sbjct: 377 LDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMF 436

Query: 421 DKGIVSDSCV---LLEDMIEKGIRPSGETFGKLRKLLIKEGREDV---LKFLQEKMNLLV 474
            +    D  V   ++ +M+++G  P    F ++   L+  G +++   L  +QEK   L 
Sbjct: 437 VRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLTGNQELSRELLRMQEKYTRLR 496

Query: 475 KE 476
           +E
Sbjct: 497 RE 498


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 212/437 (48%), Gaps = 14/437 (3%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVE-DVLEKFR-NAGTL--AFCFFKWAEKQQNYEHSV 97
           ML+    V +T   +S +   P +V  +VL   R NAG    A   F+  ++++  E   
Sbjct: 25  MLAQALEVFETMKSESCV---PSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDR 81

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNV 156
             Y+++I  L      +    L++ MR K +  NV T+  I++   +  K EE+      
Sbjct: 82  WTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEE 141

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M   G   ++ AFNG++    +S N+ KA+E++  M +  + PD+ +Y IL+ G  K   
Sbjct: 142 MMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGK 201

Query: 216 LPRAREIFREMV--DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
           L  + +I  EM     G  P+++T+  ++  LC+ G +++AL +  SM    C+P  + Y
Sbjct: 202 LDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTY 261

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+       ++  A + F +M +  I  D   YN+LI  +CK        ++ ++M+ 
Sbjct: 262 TTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSG 321

Query: 334 -KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELE 391
             G+ P   T N +++G    G+   A  +   M  K   AD  TY ++I    +  +L+
Sbjct: 322 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLD 381

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A +V+K M+ K+F+    +    + GLC  G +  +  + E   + G  P+ ETF  L 
Sbjct: 382 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILS 441

Query: 452 KLLIKEGR-EDVLKFLQ 467
           + LIK GR ED  K ++
Sbjct: 442 ESLIKLGRVEDAQKLME 458



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 164/342 (47%), Gaps = 6/342 (1%)

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           + K  +  + +  +++  A+   + +A+  F  M+      +L  +N L+++ C +    
Sbjct: 3   KAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFG 62

Query: 184 KAQEIFDCMK--DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           KA ++F  MK   R  PD  TY+ L+ G     N   AR++  EM D     ++ TY  +
Sbjct: 63  KALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSI 122

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +  L K  + +E+  +++ M +  C P  F ++ ++  +   N +E A + +  M ++G 
Sbjct: 123 IKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGY 182

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKD--MNSKGVAPNSRTCNIILNGLIGRGETDEA 359
             D   Y+ LI    K  K     ++L +  M + G  PN  T + +++GL   GE ++A
Sbjct: 183 KPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKA 242

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             VF  M++  C+ +  TYT +I   C+  ++ +A ++++ M      P    ++ LI G
Sbjct: 243 LEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAG 302

Query: 419 LCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGR 459
            C +G + ++  L  +M    G++P+  TF  L     K G+
Sbjct: 303 YCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK 344



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 5/309 (1%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           A++ ++ +L K+  + +A E+F+ MK +  +P   TY++L+          +A ++F+ M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 227 V-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
             +    PD  TY  ++  LC +G  + A  ++  M         F YS ++ +   E +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            E++     EM   G   DV  +N ++  F ++N  +    V + M   G  P++ + +I
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 346 ILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           +++GL   G+ DE+ ++   M         +  T++ +I   C+ GELEKA +V+  M  
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
               P+ +T++ LI GLC    V  +  L E M +  I P    +  L     K G  D 
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 311

Query: 463 LKFLQEKMN 471
            + L  +M+
Sbjct: 312 AEKLYREMS 320



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 3/211 (1%)

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C      Y  +V +      +  A++ F  M+    +  +  YN LI + C A +
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 321 FKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
           F     + + M   K V P+  T N +++GL   G T+ A ++   M  K   A+  TY+
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +IK   +  + E+++KV + M      P +  F+ ++ G      +  +  + + M+E 
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 439 GIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           G +P   ++  L   L K G+ ++ LK L E
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSE 211


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 188/371 (50%), Gaps = 3/371 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + ++  + ++I  L K+ ++    +L + M  +    +V T+  I+    ++ +   A  
Sbjct: 165 QPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAG 224

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
               M++ G   N+  ++ ++ +  K + V +A +IF  MK + I PD  TY+ L++G  
Sbjct: 225 LLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLC 284

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A  +  EM      PDIVT+ ++VD +CK G+V EA G++K+M      P   
Sbjct: 285 NFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVV 344

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L++ Y + + + +A   F  M   G   DV  YN LI  +CK  +     ++  +M
Sbjct: 345 TYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEM 404

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGEL 390
             +G+ PN+ + N +++GL   G   EA  +F+ M       +  TY++++  FC+ G  
Sbjct: 405 IHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYF 464

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            KAF++++ M+     P++  +++LI+ +C  G + D+  L  ++  KG++P+ + +  +
Sbjct: 465 GKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTI 524

Query: 451 RKLLIKEGRED 461
              L KEG  D
Sbjct: 525 INGLCKEGLLD 535



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 176/349 (50%), Gaps = 3/349 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I  L KI +      L+  M       NV T+  I+  + + ++V EA+  F+
Sbjct: 203 VYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFS 262

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDP 214
            M+  G++ ++  +N L+  LC     ++A  + + M+    +PD  T+++L++   K+ 
Sbjct: 263 YMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEG 322

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A+ + + M + G  PD+VTY  ++        V EA  +  +M +  C+P  F Y+
Sbjct: 323 KVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYN 382

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L++ Y    RI++A   F EM   G+  +   YN LI   C+    +    + K+M++ 
Sbjct: 383 ILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTN 442

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G  PN  T +I+L+G   +G   +A+R+FR M     + +   Y ++I   C+ G L  A
Sbjct: 443 GNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDA 502

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            K++  + +K   P+   ++ +INGLC +G++ ++     +M E G  P
Sbjct: 503 RKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPP 551



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 182/367 (49%), Gaps = 12/367 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM------LNVETFCIIMRKYARVQKVEEAVYT 153
           +  ++ ++ K+ QY   +D V ++ TK+M       N+ T  I++  ++ +Q+V+ A   
Sbjct: 100 FTKLLSAIVKMGQY---YDTVISL-TKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSV 155

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
              + K G+   +  F  L++ LCK     +A E+FD M  R   PD  TY+ ++ G  K
Sbjct: 156 LAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCK 215

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                 A  + ++M + GC P++VTY  ++D   K  RV+EAL I   M      P  F 
Sbjct: 216 IGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFT 275

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+      ++ ++A     EM    I+ D+  +N L+   CK  K      VLK M 
Sbjct: 276 YNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT 335

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
             GV P+  T + ++ G   R E  EA ++F  MI K C+ D  +Y ++I  +C+   ++
Sbjct: 336 EMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRID 395

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A +++  M  +   P+  +++ LI+GLC  G + ++  L ++M   G  P+  T+  L 
Sbjct: 396 EAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILL 455

Query: 452 KLLIKEG 458
               K+G
Sbjct: 456 DGFCKQG 462



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 162/318 (50%), Gaps = 3/318 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+S+I+ L    Q++    L+N MR+  ++ ++ TF +++    +  KV EA     
Sbjct: 273 IFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLK 332

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M + GV  ++  ++ L+        V +A+++FD M  +   PD  +Y+IL+ G+ K  
Sbjct: 333 TMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVK 392

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A+++F EM+  G  P+ V+Y  ++  LC+ G + EA  + K+M +    P  F YS
Sbjct: 393 RIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYS 452

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+  +  +     A   F  M+      ++ MYN LI A CK+   ++  ++  ++  K
Sbjct: 453 ILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVK 512

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKA 393
           G+ PN++    I+NGL   G  DEA   FR M +  C  D  +Y ++I+ F    +  +A
Sbjct: 513 GLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRA 572

Query: 394 FKVWKYMKLKRFIPSMHT 411
            ++   M+ K FI  + T
Sbjct: 573 VQLIGEMRDKGFIADVGT 590



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 122/260 (46%), Gaps = 6/260 (2%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGIVKSMDSTVCRPTSFIY 273
           N+  A   F  M+     P I+ +  ++  + K G+  D  + + K M+     P  +  
Sbjct: 77  NIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTL 136

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+L++ +    R++ A     ++ K G+   +  +  LI   CK  KF     +  DM +
Sbjct: 137 SILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVA 196

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +G  P+  T   I+NGL   GET  A  + ++M +  C+ +  TY+ +I    +   + +
Sbjct: 197 RGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNE 256

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++ YMK+K   P + T++ LI GLC+     ++  LL +M    I P   TF  L  
Sbjct: 257 ALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVD 316

Query: 453 LLIKEGR----EDVLKFLQE 468
            + KEG+    + VLK + E
Sbjct: 317 TICKEGKVSEAQGVLKTMTE 336



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN-VYRVLKDMNSKGVAPNSRTCN 344
           I+DA+ +F  M     L  +  +  L+ A  K  ++ + V  + K M   G++PN  T +
Sbjct: 78  IDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS 137

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           I++N        D A+ V  ++IKL                                   
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKL----------------------------------G 163

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P++ TF+ LIN LC  G  + +  L +DM+ +G RP   T+  +   L K G      
Sbjct: 164 LQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAA 223

Query: 465 FLQEKM 470
            L +KM
Sbjct: 224 GLLKKM 229


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 183/359 (50%), Gaps = 5/359 (1%)

Query: 96  SVRAYHSMIESL-AKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153
           +VR Y  +I +L    R  + M DL N MR +    NV T+ +++    + +K++E+   
Sbjct: 318 TVRTYTVIIHALFGNDRNLEGM-DLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRI 376

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGK 212
            N M + G+  ++  +N L+   C+   +  A EI   M+ +   P+ +TY+ L+ G+ K
Sbjct: 377 LNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSK 436

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             ++ +A  +  +M+++   P +VTY  ++ V CKAG  D A  ++  +      P  + 
Sbjct: 437 RKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWT 496

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YSV + T     R+E+A D F  +++ GI A+  MY ALI   CKA K      +L+ M+
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           S+   PNS T N ++ G+   G+  E   +   M K+  +    TYT++I+   + G+ +
Sbjct: 557 SEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFD 616

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A +V+  M      P ++T++  I+  C  G V ++  ++  MIE G+ P   T+  L
Sbjct: 617 HANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLL 675



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 177/367 (48%), Gaps = 39/367 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y R   V  A   FN+M   G  +N  ++  ++  LC++  + +   +F  M
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKM 310

Query: 193 K-DRFIPDSKTYSILLEG-WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA-- 248
           + D   P  +TY++++   +G D NL    ++F EM +  C P++ TY +MVD +CK   
Sbjct: 311 REDDCYPTVRTYTVIIHALFGNDRNL-EGMDLFNEMRERSCEPNVHTYTVMVDAMCKERK 369

Query: 249 ---------------------------------GRVDEALGIVKSMDSTVCRPTSFIYSV 275
                                            GR++ AL I+  M+S  CRP    Y+ 
Sbjct: 370 LDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNE 429

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  +     +  A+    +M ++ +   +  YN+LI   CKA  F + Y++L  +   G
Sbjct: 430 LICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENG 489

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           + P+  T ++ ++ L      +EA  +F  +  K  +A+   YT +I   C+ G++++A 
Sbjct: 490 LVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAI 549

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            + + M  +  +P+  T++ LI G+C +G V +   ++E+M + G++P+  T+  L + +
Sbjct: 550 SLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEM 609

Query: 455 IKEGRED 461
           ++EG  D
Sbjct: 610 LREGDFD 616



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 187/413 (45%), Gaps = 44/413 (10%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMR-----TKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           SMI++   +   + + D +  M       K  L+V ++  ++   AR   ++E    +  
Sbjct: 145 SMIKACVSVDDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTE 204

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQ-EIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           M    +  N+   N +++A  K  N+ +A   +    +    PDS TY+ L+ G+ ++ +
Sbjct: 205 MLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNND 264

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A ++F  M + GC  + V+Y  ++  LC+AGR+DE + + K M    C PT   Y+V
Sbjct: 265 VNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTV 324

Query: 276 L----------------------------VHTYGV-------ENRIEDAVDTFLEMEKNG 300
           +                            VHTY V       E +++++     EM + G
Sbjct: 325 IIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKG 384

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           ++  V  YNALI  +C+  + +    +L  M S    PN RT N ++ G   R    +A 
Sbjct: 385 LVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAM 444

Query: 361 RVFRRMI--KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
            +  +M+  KL  +   TY  +I + C+ G  + A+K+   +K    +P   T+SV I+ 
Sbjct: 445 TLLSKMLESKLTPSLV-TYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDT 503

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           LC    + ++C L   + EKGI+ +   +  L     K G+ D    L E+M+
Sbjct: 504 LCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 131/272 (48%), Gaps = 2/272 (0%)

Query: 98  RAYHSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           R Y+ +I   +K +  ++ M  L   + +K   ++ T+  ++    +    + A    ++
Sbjct: 425 RTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDL 484

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT-YSILLEGWGKDPN 215
           +++ G+  +   ++  +  LCKSK + +A ++F+ +K++ I  ++  Y+ L++G  K   
Sbjct: 485 LKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGK 544

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +   M    C P+  TY  ++  +CK G+V E L +V++M     +PT   Y++
Sbjct: 545 IDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTI 604

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+     E   + A   F +M   G   DV  Y A I  +C +   K    ++  M   G
Sbjct: 605 LIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAG 664

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           V P+S T  ++++     G   +A+ V +RM+
Sbjct: 665 VMPDSLTYTLLISAYERLGLAYDAFNVLKRML 696



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 117/251 (46%), Gaps = 2/251 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           S+  Y+S+I    K   +   + L++ ++   ++  + T+ + +    + +++EEA   F
Sbjct: 458 SLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLF 517

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
           N +++ G+  N   +  L+   CK+  + +A  + + M  +  +P+S TY+ L+ G  K+
Sbjct: 518 NSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKE 577

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +     +   M   G  P + TY I+++ + + G  D A  +   M S   +P  + Y
Sbjct: 578 GKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTY 637

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +HTY     +++A      M + G++ D   Y  LI A+ +     + + VLK M  
Sbjct: 638 TAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLD 697

Query: 334 KGVAPNSRTCN 344
            G  P+    N
Sbjct: 698 AGCDPSHPIWN 708


>gi|242073718|ref|XP_002446795.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
 gi|241937978|gb|EES11123.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
          Length = 468

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 213/453 (47%), Gaps = 22/453 (4%)

Query: 20  RRYNSSEPSTEA-LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVL---EKFRN 75
           R    S P  EA LD       I+   P   ++ AL   GI  + E+ E VL   E ++ 
Sbjct: 12  REAEESNPRAEAFLD-------IICRVPAGEVEAALSACGIGPTAEVAELVLKSCECYKR 64

Query: 76  AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVE 132
             + A  FF+WA    +  H+  A++ +++ L K   ++ MWD + +M  +   R+++V 
Sbjct: 65  PKS-AVRFFRWA--GLSLSHTAYAWNLLVDILGKAAMFEPMWDAIRSMHQEGGGRLVSVA 121

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDC 191
           TF  +   Y     +++A+   +VM +YG+  +  A N LLSA+C+ +   + A ++F+ 
Sbjct: 122 TFASVFASYCASGNLKDAIAALDVMDRYGLKPDAVALNSLLSAICRVEGRAQAAHDVFER 181

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNP-DIVTYGIMVDVLCKAG 249
            K    PD+ T++ILLE   K+ N  RA+ +F EMV   G +  ++  Y   +  L + G
Sbjct: 182 TKATIPPDADTFAILLEACEKEGNAMRAKSVFGEMVVRVGWDAANVPAYDSFLSTLVRGG 241

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNGILADVAMY 308
             DEA   ++ M S  C P    ++  V    ++    +AV  + L + + G++ + +MY
Sbjct: 242 LFDEAFKFLQVMRSKGCLPGIKFFATAVDLVVLKRDYPNAVAIWNLMVSEAGLVPNFSMY 301

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           NA+IG +C A        +L +M   GV  NS T N IL G I   +  EA R    M K
Sbjct: 302 NAMIGLYCNAGAMDYALGMLDEMPLNGVFANSVTYNTILEGFIKHCKAREAERFLTEMSK 361

Query: 369 LCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             +   A      I +F +      A  VW+ +      P+  +   LI GL D G +++
Sbjct: 362 NEQLPTASNCAAAISLFFKEFNPSAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRLTE 421

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                ++MI+  +  S  T   +++   K  R 
Sbjct: 422 VERRADEMIDMRVELSRSTMDNMKRAFAKAQRH 454


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 206/400 (51%), Gaps = 15/400 (3%)

Query: 62  SPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           SP++V    +L  F   G L  A   F  A K+  +   V  Y+++I    K  +     
Sbjct: 42  SPDVVTYNTLLHGFCKVGELDEALKIFDGAVKR-GFVPDVVTYNALINGFCKADKLDEAQ 100

Query: 118 DLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            ++  M ++ ++ +V T+  ++    +  +V+EA     ++   G + N+  ++ L+S L
Sbjct: 101 RILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARM---LIVDKGFSPNVITYSTLISGL 157

Query: 177 CKS-KNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           C+  + V +A ++F   +K  + P+  TY+IL++G  K+  +  A E+F  +V  G  PD
Sbjct: 158 CRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPD 217

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
            +TY + +D LCKAGRV++AL ++K MD   C P    ++ +++    E R+++A     
Sbjct: 218 AITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLS 277

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI--- 351
            ME  G   +   +N LI   C+A K+K      K+M  +GV P   T NI+++GL    
Sbjct: 278 GMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKAR 337

Query: 352 GRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G   EA  +F  MI+     D  TY+ +I    + G+L+ A ++   M+ K  IP+++
Sbjct: 338 QEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 397

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           T++ LI+GLC    V ++  L   M+EKG  P   T+G +
Sbjct: 398 TYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTI 437



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 156/299 (52%), Gaps = 10/299 (3%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M+K+G   N   +N LLS LC    +  AQ +++ M K  + PD  TY+ LL G+ K   
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A +IF   V  G  PD+VTY  +++  CKA ++DEA  I++ M S    P    Y+ 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS-- 333
           LV+      R+++A    L ++K G   +V  Y+ LI   C+  + + V   LK   S  
Sbjct: 121 LVNGLCKNGRVDEA--RMLIVDK-GFSPNVITYSTLISGLCR--ELRGVSEALKLFGSVL 175

Query: 334 -KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
            +G  P   T NI+++GL+     +EA+ +F  ++K   E DA TYT+ I   C+ G +E
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  + K M  K  +P + + + +INGLC +  V ++ VLL  M  KG  P+  +F  L
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 7/265 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKV 147
           +Q YE  V  Y+ +I+ L K  +    ++L + +  K  L  +  T+ + +    +  +V
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL-VKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E+A+     M + G   ++ + N +++ LCK K V +A+ +   M+ +   P++ +++ L
Sbjct: 235 EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA---GRVDEALGIVKSMDS 263
           + G  +     +A   F+EM+  G  P +VTY I+VD LCKA   GR+ EA+ +  +M  
Sbjct: 295 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 354

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    YS L+   G   +++DA      ME  G + +V  YN+LI   C   K   
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDE 414

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILN 348
              +   M  KG  P++ T   I++
Sbjct: 415 ALELFVAMVEKGCVPDTITYGTIIS 439



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 34/272 (12%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P+ +TY  ++  LC  GR+ +A  + + M      P    Y+ L+H +     +++A+  
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F    K G + DV  YNALI  FCKA+K     R+L+ M S+ + P+  T N ++NGL  
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127

Query: 353 RGETD---------------------------------EAYRVFRRMIKLC-EADADTYT 378
            G  D                                 EA ++F  ++K   E +  TY 
Sbjct: 128 NGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYN 187

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           ++I    +   + +AF+++  +      P   T++V I+GLC  G V D+ ++L+DM EK
Sbjct: 188 ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 247

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G  P   +   +   L KE R D  + L   M
Sbjct: 248 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM 279



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 6/240 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           AF  F    K    E     Y   I+ L K  + +    ++  M  K  + +V +   ++
Sbjct: 202 AFELFSGLVKH-GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVI 260

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
               + ++V+EA    + M+  G + N  +FN L+   C++   +KA   F  M  R + 
Sbjct: 261 NGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVK 320

Query: 198 PDSKTYSILLEGWGKDPNLPRARE---IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           P   TY+IL++G  K     R +E   +F  M++ G  PD+VTY  ++D L KAG++D+A
Sbjct: 321 PTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 380

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++ +M++  C P  + Y+ L+       ++++A++ F+ M + G + D   Y  +I A
Sbjct: 381 RRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M+   F P+  T++ L++GLC+ G +SD+  L E MI+ G  P   T+  L     K G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 460 ED 461
            D
Sbjct: 61  LD 62


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 175/354 (49%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +I  L K  + +   +++  M T     N  TFC+++  Y R   +  A+   + M+
Sbjct: 83  YNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEME 142

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLP 217
           K  +  +  ++  +++ LC  K++  A ++ + M      P+   YS L+ G+  +  + 
Sbjct: 143 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIE 202

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            AR +   M  +G  PDI  Y  ++  L KAG+++EA   +  +     +P +  +   +
Sbjct: 203 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 262

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y    ++ +A   F EM  +G++ +  +Y  LI    KA        + + +++ GV 
Sbjct: 263 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL 322

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+ +TC+  ++GL+  G   EA +VF  +  K    D  TY+ +I  FC+ GE+EKAF++
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 382

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
              M LK   P++  ++ L++GLC  G +  +  L + M EKG+ P   T+  +
Sbjct: 383 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 436



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 178/354 (50%), Gaps = 3/354 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +++N   S  +Y +MI  L   +   +   L+  M    +  NV  +  ++  YA   ++
Sbjct: 142 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 201

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           EEA    + M   GV  ++  +N ++S L K+  + +A      ++ R + PD+ T+   
Sbjct: 202 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 261

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A + F EM+D G  P+   Y ++++   KAG + EAL I + + +   
Sbjct: 262 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 321

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P     S  +H      R+++A+  F E+++ G++ DV  Y++LI  FCK  + +  + 
Sbjct: 322 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 381

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +  +M  KG+APN    N +++GL   G+   A ++F  M  K  E D+ TY+ MI  +C
Sbjct: 382 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 441

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +   + +AF ++  M  K   P    ++ L++G C +G +  +  L  +M++KG
Sbjct: 442 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 175/352 (49%), Gaps = 22/352 (6%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V+T    +    +  +V+EA+  F+ +++ G+  ++  ++ L+S  CK   V KA E+ 
Sbjct: 324 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 383

Query: 190 D--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           D  C+K    P+   Y+ L++G  K  ++ RAR++F  M + G  PD VTY  M+D  CK
Sbjct: 384 DEMCLKG-IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK 442

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +  V EA  +   M S   +P SF+Y+ LVH    E  +E A++ F EM + G  A    
Sbjct: 443 SENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLS 501

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM- 366
           +N LI  +CK+ K +   ++ ++M +K + P+  T   +++     G+ +EA  +F+ M 
Sbjct: 502 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 561

Query: 367 -----------------IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                             K  + D  TY ++I   C+   L +AFK+   +  K  +   
Sbjct: 562 ERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 621

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
               +LI  LC +  ++++  LL++M E G++PS      L +   + G+ D
Sbjct: 622 TIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMD 673



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 165/338 (48%), Gaps = 2/338 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++  + R   ++E +   +VM   G+  NL  +N L+  LCK   + KA EI   M    
Sbjct: 51  LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 110

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+S+T+ +L+EG+ ++ N+ RA E+  EM      P  V+YG M++ LC    +  A 
Sbjct: 111 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 170

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M  +  +P   +YS L+  Y  E RIE+A      M  +G+  D+  YNA+I   
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
            KA K +     L ++  +G+ P++ T    + G    G+  EA + F  M+      + 
Sbjct: 231 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 290

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             YT++I    + G L +A  +++++     +P + T S  I+GL   G V ++  +  +
Sbjct: 291 PLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 350

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           + EKG+ P   T+  L     K+G  +    L ++M L
Sbjct: 351 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 388



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 160/334 (47%), Gaps = 18/334 (5%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF   +  Y++  K+ EA   F+ M  +G+  N   +  L++   K+ N+ +A  IF  +
Sbjct: 257 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 316

Query: 193 KD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
                +PD +T S  + G  K+  +  A ++F E+ + G  PD+ TY  ++   CK G V
Sbjct: 317 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 376

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A  +   M      P  FIY+ LV        I+ A   F  M + G+  D   Y+ +
Sbjct: 377 EKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 436

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I  +CK+      + +  +M SKGV P+S   N +++G    G+ ++A  +FR M++   
Sbjct: 437 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG-------- 423
           A   ++  +I  +C+  ++++A ++++ M  K+ +P   T++ +I+  C  G        
Sbjct: 497 ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 556

Query: 424 ---------IVSDSCVLLEDMIEKGIRPSGETFG 448
                    IV     L E M+ KG++P   T+G
Sbjct: 557 FKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYG 590



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 139/293 (47%), Gaps = 2/293 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M + G+  N   +  + + LC++K + +A+  F+ M K    PD    S L++G+ ++ +
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +     I   MV  G   +++TY +++  LCK G++++A  I+K M +  C+P S  + +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y  E+ +  A++   EMEK  ++     Y A+I   C         ++L+ M   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
           + PN    + ++ G    G  +EA R+   M       D   Y  +I    + G++E+A 
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
                ++ +   P   TF   I G    G ++++    ++M++ G+ P+   +
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 293



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 18/283 (6%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++++ L K    Q    L + M  K +  +  T+  ++  Y + + V EA   F+ M 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             GV  +   +N L+   CK  ++ KA  +F  M  +    + +++ L++G+ K   +  
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 517

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA-----------------LGIVKSM 261
           A ++F+EM+     PD VTY  ++D  CKAG+++EA                   + + M
Sbjct: 518 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKM 577

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +   +P    Y ++++ +  E+ + +A     E+   G+L    +++ LI A CK    
Sbjct: 578 VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDL 637

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
               ++L +M   G+ P+   C+ ++      G+ DEA RVF 
Sbjct: 638 TEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 680



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 99/244 (40%), Gaps = 19/244 (7%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
           AF  F     +    HS   Y++++    K    +   +L   M  K      +F  ++ 
Sbjct: 449 AFSLFHEMPSKGVQPHSF-VYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLID 507

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-- 197
            Y +  K++EA   F  M    +  +   +  ++   CK+  + +A  +F  M++R +  
Sbjct: 508 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 567

Query: 198 ----------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
                           PD  TY +++    K+ NL  A ++  E+V  G       + ++
Sbjct: 568 DTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLL 627

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +  LCK   + EA  ++  M     +P+    S LV ++    ++++A   F  ++  G+
Sbjct: 628 ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGL 687

Query: 302 LADV 305
           + D 
Sbjct: 688 VPDT 691


>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 197/415 (47%), Gaps = 2/415 (0%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           K  ++ AL   GI ++ +IV +V+ +    G     FF WA KQ      V  Y+ +I++
Sbjct: 75  KAAIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQPTIPKDVDTYNVIIKA 134

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L + +  + +  ++  M  + +  N ET  I+M  + + ++V +A+  F  ++++G   +
Sbjct: 135 LGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCD 194

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             + N LL  LC+  +V  A   F+ MK     +  TY+I++ GW K   +       + 
Sbjct: 195 TESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKA 254

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV  G +P+ +T+  +++ L +AGR+D+A+ +   M+ T C P + +Y+ L+  +     
Sbjct: 255 MVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRD 314

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++ +  +  M  +    ++  Y  LI AF KA K  +   +L +M  +G+ P +     
Sbjct: 315 FDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITS 374

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            +  L   G    A  ++++  K+ C      Y +++    + G+      +W  M+   
Sbjct: 375 FIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESG 434

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +      +  +INGLC+ G +  + +++E+ + KG  PS     KL   L+   +
Sbjct: 435 YSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFCPSRLIRSKLNNKLLASNK 489



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 145/327 (44%), Gaps = 6/327 (1%)

Query: 148 EEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           E  V  FN  +++  + +++  +N ++ AL + K +    ++   M  + I P+ +T SI
Sbjct: 106 EAMVIFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSI 165

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +++ + K   + +A E+FR + + G   D  +  +++  LC+   V  A     +M   +
Sbjct: 166 VMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGI 225

Query: 266 CRP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             P     Y++++  +    +I +       M  +G   +   ++ LI    +A +  + 
Sbjct: 226 --PFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDA 283

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
             V   M   G  PN+   N +++  I   + DE  + +  M+   C+ + DTYT +I  
Sbjct: 284 VEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVA 343

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           F +  ++  A ++   M  +  IP+    +  I  LC  G    + ++ +   + G R S
Sbjct: 344 FLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRIS 403

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
              +  L   L + G+  +L  L ++M
Sbjct: 404 LSAYKLLLMRLSRFGKCGMLLNLWDEM 430



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 8/203 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I +    R +       N M +     N++T+  ++  + + +KV +A+   + M 
Sbjct: 302 YNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMV 361

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGKDPN 215
             G+     A    +  LC+      A  I+   K R +        Y +LL    +   
Sbjct: 362 GRGMIPTTGAITSFIEPLCQYGPPHAAMMIYK--KARKVGCRISLSAYKLLLMRLSRFGK 419

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV-KSMDSTVCRPTSFIYS 274
                 ++ EM ++G + D   Y  +++ LC  G++D A+ ++ +S+    C P+  I S
Sbjct: 420 CGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFC-PSRLIRS 478

Query: 275 VLVHTYGVENRIEDAVDTFLEME 297
            L +     N++E A   FL+++
Sbjct: 479 KLNNKLLASNKVEMAYKLFLKIK 501



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 46/270 (17%), Positives = 103/270 (38%), Gaps = 37/270 (13%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            +  +IE L +  +     ++ + M  T  + N   +  ++  +   +  +E +  +N M
Sbjct: 266 TFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFM 325

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                  N+  +  L+ A  K++ V  A E+ D M  R  IP +   +  +E   +    
Sbjct: 326 VSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPP 385

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  I+++    GC   +  Y +++  L + G+    L +                   
Sbjct: 386 HAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNL------------------- 426

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                           + EM+++G  +D  +Y  +I   C   +      V+++   KG 
Sbjct: 427 ----------------WDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGF 470

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            P+    + + N L+   + + AY++F ++
Sbjct: 471 CPSRLIRSKLNNKLLASNKVEMAYKLFLKI 500


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 178/368 (48%), Gaps = 4/368 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y ++++ LAK ++ Q    L+  +        + T+  ++    ++ ++EEA+    
Sbjct: 34  IHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 93

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            +   G T ++  +  L+  L K K   +A ++F  M  R +  D+  Y+ L+ G  +  
Sbjct: 94  KIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAG 153

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +P+A  +++ M   GC PD+VT   M+D LCKAGR+  A+ I KSM++    P   +YS
Sbjct: 154 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 213

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H      +++ A++   +M+K     D   YN LI   CK+           +M   
Sbjct: 214 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEA 273

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G  P+  T NI+++G    G TD A  VF  M    C  +  TY  +I   C+  +L KA
Sbjct: 274 GCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKA 333

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
              +++MK +   P    +S L++GLC  G +   C+L ++M   G+  S +T  +L   
Sbjct: 334 SLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS-QTRTRLIFH 392

Query: 454 LIKEGRED 461
           L K  R D
Sbjct: 393 LCKANRVD 400



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 165/333 (49%), Gaps = 2/333 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +++ T+  I+   A+ +K++EAV     +   G T  +A +N LL+ LCK   + +A ++
Sbjct: 32  IDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 91

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              + D    PD  TY+ L++G GK      A ++F+EM   G   D V Y  ++  L +
Sbjct: 92  LRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 151

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AG++ +A  + K+M S  C P     S ++       RI  AV  F  ME  G+  +  +
Sbjct: 152 AGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVV 211

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+ALI   CKA K      +L  M      P++ T NI+++GL   G+   A   F  M+
Sbjct: 212 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEML 271

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +  C+ D  TY ++I  FC+ G  + A  V+  M   R  P++ T+  LI+GLC +  ++
Sbjct: 272 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLT 331

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            + +  + M E+G  P    +  L   L K G+
Sbjct: 332 KASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 1/265 (0%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  TY+ +++   K+  +  A  +  ++   GC P I TY  +++ LCK GR++EA+ ++
Sbjct: 33  DIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 92

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + +    C P    Y+ L+   G + R  +A   F EM   G+  D   Y ALI    +A
Sbjct: 93  RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTY 377
            K      V K M S+G  P+  T + +++GL   G    A R+F+ M  +    +   Y
Sbjct: 153 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 212

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           + +I   C+  +++ A ++   MK     P   T+++LI+GLC  G V+ +    ++M+E
Sbjct: 213 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLE 272

Query: 438 KGIRPSGETFGKLRKLLIKEGREDV 462
            G +P   T+  L     K G  D 
Sbjct: 273 AGCKPDVYTYNILISGFCKAGNTDA 297



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 158/342 (46%), Gaps = 5/342 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEAVYTF 154
           V  Y S+I+ L K ++    + L   M + R L ++T C   ++R   +  K+ +A   +
Sbjct: 104 VVTYTSLIDGLGKKKRSFEAYKLFKEMAS-RGLALDTVCYTALIRGLLQAGKIPQASSVY 162

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G   ++   + ++  LCK+  +  A  IF  M+ R   P+   YS L+ G  K 
Sbjct: 163 KTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 222

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A E+  +M    C PD +TY I++D LCK+G V  A      M    C+P  + Y
Sbjct: 223 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTY 282

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L+  +      + A   F +M  +    +V  Y  LI   CK  +        + M  
Sbjct: 283 NILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKE 342

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           +G  P+S   + +++GL   G+ +    +F  M +   A++ T T +I   C+   +++A
Sbjct: 343 RGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEA 402

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
             ++  ++ K  +P  + ++ +I+ L   G V++   + ++M
Sbjct: 403 VSLFNAIR-KEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T +I++NGL+  G   +A+ + +      C  D  TYT ++    +  ++++A  + + +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P++ T++ L+NGLC  G + ++  LL  +++ G  P   T+  L   L K+ R 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 461 -DVLKFLQE 468
            +  K  +E
Sbjct: 121 FEAYKLFKE 129


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 180/367 (49%), Gaps = 7/367 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDL---VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           +  ++ +L +I+ Y  +  L   +  +R +R  +V  F I++  ++R+Q+V+ A      
Sbjct: 87  FDKLLSALVRIKHYGTVLSLSKRIELLRIER--DVFHFNILINCFSRLQRVDFAFSVLGK 144

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           + K G   +   F+ L++ LC      +A E FD M    + P+  TY+ +++G+ K   
Sbjct: 145 IIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGK 204

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A  + ++M   G  PDIV Y  ++D LCK   V EAL I   +     RP  F YS+
Sbjct: 205 TTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSI 264

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+H     ++ E+A   F EM    I+ DV  +N L+   CK         ++K M  KG
Sbjct: 265 LMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKG 324

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           V PN  T N ++NG   + +  EA  VF  MI K C  +  +Y ++I  +C+   +++A 
Sbjct: 325 VEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEAR 384

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +++  M  +  IP+   ++ LI+GLC  G   ++  L +DM  +G  P   T   L   L
Sbjct: 385 ELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSL 444

Query: 455 IKEGRED 461
            K G  D
Sbjct: 445 CKLGYLD 451



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 155/296 (52%), Gaps = 2/296 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  I++ + ++ K   AV     M K G   ++  +N ++  LCK + V +A +IF
Sbjct: 188 NLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIF 247

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +K + + PD  TYSIL+ G         A  +F EM+     PD+VT+ I+VD LCK 
Sbjct: 248 SEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKE 307

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G + EA GI+K M      P    Y+ L++ Y ++N++ +A   F  M   G + +V  Y
Sbjct: 308 GMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSY 367

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N LI  +CKA +      +  +M+ +G+ PN+   N +++GL   G   EA  +F+ M  
Sbjct: 368 NILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQA 427

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           + C  D  T T+++   C+ G L+ A ++++ M+     P++ T+ +LI  +   G
Sbjct: 428 QGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSG 483



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 140/296 (47%), Gaps = 38/296 (12%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I+ L K R      D+ + ++ K +  +V T+ I+M       + EEA   FN M 
Sbjct: 227 YNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMM 286

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
              +  ++  FN L+  LCK   + +AQ I   M ++ + P+  TY+ L+ G+     + 
Sbjct: 287 SLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVF 346

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            AR +F  M+  GC P++V+Y I+++  CKA R+DEA                       
Sbjct: 347 EARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEAR---------------------- 384

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                        + F EM   G++ +   YN LI   C+A +      + KDM ++G +
Sbjct: 385 -------------ELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCS 431

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           P+  TC I+L+ L   G  D A R+FR M   C + +  TY ++I+   + G++ +
Sbjct: 432 PDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKIYR 487



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 5/260 (1%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N+  A   F  M+     P IV +  ++  L +       L + K ++        F ++
Sbjct: 64  NIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFN 123

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L++ +    R++ A     ++ K G   D   +++LI   C  +KF        +M + 
Sbjct: 124 ILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS 183

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G  PN  T N I+ G    G+T  A  + ++M K     D   Y  +I   C+   + +A
Sbjct: 184 GYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEA 243

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             ++  +K K   P + T+S+L++GLC+     ++  L  +M+   I P   TF  L   
Sbjct: 244 LDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDK 303

Query: 454 LIKEG----REDVLKFLQEK 469
           L KEG     + ++K + EK
Sbjct: 304 LCKEGMLSEAQGIIKIMIEK 323



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 90  QQNYEHSVRAYHSMIESLA---KIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQ 145
           ++  E +   Y+S++       K+ + ++++D   AM TK  M NV ++ I++  Y + Q
Sbjct: 322 EKGVEPNYATYNSLMNGYCLQNKVFEARMVFD---AMITKGCMPNVVSYNILINGYCKAQ 378

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           +++EA   F+ M   G+  N   +N L+S LC++    +A+E+F  M+ +   PD  T +
Sbjct: 379 RIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCT 438

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ILL+   K   L  A  +FR M D+   P++VTY I++  + K+G++
Sbjct: 439 ILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
           E D   + ++I  F +   ++ AF V  K +KL  F P   TFS LINGLC +   + + 
Sbjct: 116 ERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLG-FEPDAVTFSSLINGLCFEDKFARAM 174

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
              ++M+  G +P+  T+  + K   K G+  V   L +KM+
Sbjct: 175 EFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMD 216


>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g43820
 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 546

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 200/418 (47%), Gaps = 2/418 (0%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           K  +  +L   GI +S +IV DVL +   +G     FF WA ++      V +Y  ++ +
Sbjct: 101 KSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRA 160

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L + + +  M D++  M  + +  ++E   I M  + RV  V  A+  F   + +GV  +
Sbjct: 161 LGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCS 220

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +FN LL  LC+  +V  A+ +F+  K     DS +Y+I++ GW K   +    ++ +E
Sbjct: 221 TESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKE 280

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV++G  PD ++Y  +++ L + GR+++++ I  ++      P + +Y+ ++  +     
Sbjct: 281 MVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARD 340

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++++  +  M       ++  Y+ L+    K  K  +   + ++M S+GV P +     
Sbjct: 341 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTS 400

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            L  L   G    A  ++++  K  C      Y +++K   + G+      VW  M+   
Sbjct: 401 FLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESG 460

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           +   +  +  +++GLC  G + ++ +++E+ + KG  P+   + +L   L+   + ++
Sbjct: 461 YPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTEL 518



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 152/327 (46%), Gaps = 7/327 (2%)

Query: 149 EAVYTFN--VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           EA+ TF    +++ GVT+++ +++ +L AL + K      ++   M    + PD +  +I
Sbjct: 132 EAMVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTI 191

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
            ++ + +   + RA E+F E    G      ++  ++  LC+   V  A  +  +    +
Sbjct: 192 AMDSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNI 251

Query: 266 CRP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             P  S  Y++++  +     +E+      EM ++G   D   Y+ LI    +  +  + 
Sbjct: 252 --PFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDS 309

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKM 383
             +  ++  KG  P++   N ++   I   + DE+ R +RRM+ + CE + +TY+ ++  
Sbjct: 310 VEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSG 369

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             +G ++  A ++++ M  +  +P+    +  +  LC  G    + V+ +   + G R S
Sbjct: 370 LIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRIS 429

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
              +  L K L + G+  +L  + ++M
Sbjct: 430 ESAYKLLLKRLSRFGKCGMLLNVWDEM 456



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 126/282 (44%), Gaps = 2/282 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           K+ N      +Y+ MI   +K+ + + M  ++  M  +    +  ++  ++    R  ++
Sbjct: 247 KKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRI 306

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            ++V  F+ ++  G   +   +N ++     +++  ++   +  M D    P+ +TYS L
Sbjct: 307 NDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKL 366

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  K   +  A EIF EM+  G  P        +  LC  G    A+ I +      C
Sbjct: 367 VSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGC 426

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           R +   Y +L+       +    ++ + EM+++G  +DV +Y  ++   C     +N   
Sbjct: 427 RISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVL 486

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           V+++   KG  PN    + + + L+   +T+ AY++F ++ K
Sbjct: 487 VMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKLFLKIKK 528


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 183/358 (51%), Gaps = 6/358 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  ++ ++ ++ ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 80  SVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTF 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + K G+  ++  F  LL  LC    V +A ++F  +     PD  T++ L+ G  ++ 
Sbjct: 140 GKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR---PDVLTFTTLMNGLCREG 196

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIY 273
            +  A  +   MV+ G  PD +TYG  VD +CK G    AL +++ M+  +  +P   IY
Sbjct: 197 RVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIY 256

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++     + R  D+ + F+EM+  GI  ++  YN +IG FC + ++    R+L++M  
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + ++PN  T N ++N  +  G+  EA  ++  M+ +    +  TY  MI  FC+   L+ 
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  ++  M  K   P + TF+ LI+G C    + D   LL +M  +G+  +  T+  L
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 434



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 175/384 (45%), Gaps = 27/384 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--------NVETFCIIMRKYARVQKVEEA 150
            Y + ++ + K      M D V+A+   R +        NV  +  I+    +  +  ++
Sbjct: 219 TYGTFVDGMCK------MGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
              F  MQ  G+  N+  +N ++   C S     AQ +   M +R I P+  TY+ L+  
Sbjct: 273 HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINA 332

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K+     A E++ EM+  G  P+ +TY  M+D  CK  R+D A  +   M +  C P 
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            F ++ L+  Y    RI+D ++   EM + G++A+   YN LI  FC          + +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------CEADADTY 377
            M S GV P+  TCN +L+GL   G+  +A  +F+ M K              E D  TY
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I      G+  +A ++++ M  +  +P   T+S +I+GLC +  + ++  +   M  
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
           K   P+  TF  L     K GR D
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVD 596



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 14/375 (3%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A    +  E+  + + +V  Y ++I+ L K  ++    +L   M+ K +  N+ T+  ++
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
             +    +   A      M +  ++ N+  +N L++A  K     +A E++D M  R  I
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ TY+ +++G+ K   L  A ++F  M   GC+PD+ T+  ++D  C A R+D+ + +
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M        +  Y+ L+H + +   +  A+D   +M  +G+  D+   N L+   C 
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 318 ANKFKNVYRVLKDMNSK-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             K K+   + K M              GV P+  T NI++ GLI  G+  EA  ++  M
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
             +    D  TY+ MI   C+   L++A +++  M  K F P++ TF+ LING C  G V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 426 SDSCVLLEDMIEKGI 440
            D   L  +M  +GI
Sbjct: 596 DDGLELFCEMGRRGI 610



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 13/276 (4%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  + ++I+     ++     +L++ M R   + N  T+  ++  +  V  +  A+    
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------PDSKTY 203
            M   GV  ++   N LL  LC +  ++ A E+F  M+   +            PD  TY
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +IL+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    ++ L++ Y    R++D ++ F EM + GI+AD  +Y  LI  F K      
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNING 632

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
              + ++M S GV P++ T   +L G   + E + A
Sbjct: 633 ALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERA 668



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 120/258 (46%), Gaps = 6/258 (2%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++F +M+ +   P ++ +  ++  + +  R D  + + + M+    R   + ++
Sbjct: 61  GLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFT 120

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+  +   +++  A+ TF ++ K G+  DV  +  L+   C  ++         D+  +
Sbjct: 121 ILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL----DLFHQ 176

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKA 393
              P+  T   ++NGL   G   EA  +  RM++   + D  TY   +   C+ G+   A
Sbjct: 177 ICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSA 236

Query: 394 FKVWKYMK-LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             + + M+ +    P++  +S +I+GLC  G  SDS  L  +M +KGI P+  T+  +  
Sbjct: 237 LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIG 296

Query: 453 LLIKEGREDVLKFLQEKM 470
                GR    + L ++M
Sbjct: 297 GFCISGRWSAAQRLLQEM 314



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 18/244 (7%)

Query: 32  LDAAKSISKIMLSS---PKVV-----LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           L+AA  +S+ M+SS   P +V     LD   D   ++       D LE F+ A   +   
Sbjct: 444 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK-------DALEMFK-AMQKSKMD 495

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
              +      E  V  Y+ +I  L    ++    +L   M  + ++ +  T+  ++    
Sbjct: 496 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           +  +++EA   F  M     + N+  FN L++  CK+  V    E+F  M  R  + D+ 
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            Y  L+ G+ K  N+  A +IF+EM+ +G  PD +T   M+        ++ A+ +++ +
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675

Query: 262 DSTV 265
             +V
Sbjct: 676 QMSV 679


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/522 (24%), Positives = 228/522 (43%), Gaps = 72/522 (13%)

Query: 22  YNSSEPSTEALDAA---KSISKIMLSSPKVVL--DTALDQSGIRVSPEIVEDVLEKFRNA 76
           Y+++  S + LD     K I + + + PK+V+  D+AL       +P  V  +L   R  
Sbjct: 31  YSNANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSAL-------APIWVSKILLGLRED 83

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ---------IM----------- 116
             LA  FFKWA  Q  + H+  +Y  ++  + + R Y          IM           
Sbjct: 84  PKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVC 143

Query: 117 --WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-------------- 160
             +D++ + R   +     F ++   +  +  +EEA   F+ M+ +              
Sbjct: 144 NIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLH 203

Query: 161 ---------------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
                                G+  ++  +N ++  LCK  ++  ++ +F  M++  + P
Sbjct: 204 RLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSP 263

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  TY+ L++G+GK  +L     +F EM D GC PDI+TY  +++  CK  ++  A    
Sbjct: 264 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYF 323

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M +   +P    YS L+  +  E  ++ A+    +M + G+L +   Y +LI A CKA
Sbjct: 324 SEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKA 383

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTY 377
                 +++L DM   GV  N  T   +L+GL   G   EA  VFR M+K     +   Y
Sbjct: 384 GNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVY 443

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T ++  + +   +E A K+ K M      P +  +  +I G C +  + ++ ++LE+M  
Sbjct: 444 TALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKS 503

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPL 478
           +GI  +      +     K G+  D L F QE  ++ V+  +
Sbjct: 504 RGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 545



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 182/419 (43%), Gaps = 73/419 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S+I+   K+   + +  L N M+    + ++ T+  ++  Y + +K+  A   F+
Sbjct: 265 VVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFS 324

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
            M+  G+  N+  ++ L+ A CK   ++ A ++  D  +   +P+  TY+ L++   K  
Sbjct: 325 EMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAG 384

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           NL  A ++  +M+  G   +IVTY  ++D LCKAGR+ EA  + +SM      P   +Y+
Sbjct: 385 NLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYT 444

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LVH Y    R+EDA+    +M +  I  D+ +Y ++I   C   K +    +L++M S+
Sbjct: 445 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 504

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEA------ 372
           G++ N      I++     G++ +A   F+ M                  LCEA      
Sbjct: 505 GISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELA 564

Query: 373 --------------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                         +   YT +I   C    +E A K++  M+ +   P +  F+ LI+G
Sbjct: 565 VDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDG 624

Query: 419 LCDKGIVSDSCVLLE-----------------------------------DMIEKGIRP 442
               G + ++ VL+                                    +MIEKGI P
Sbjct: 625 NLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILP 683



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 196/443 (44%), Gaps = 21/443 (4%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS 102
           LS   V  ++ +D  G   S E V  +  + ++ G +                 +  Y+ 
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP---------------DIITYNG 305

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +I    K  +    ++  + M+   +  NV T+  ++  + +   ++ A+     M++ G
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAR 220
           +  N   +  L+ A CK+ N+ +A ++ + M    +  +  TY+ LL+G  K   +  A 
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+FR M+  G +P+   Y  +V    KA R+++A+ I+K M     +P   +Y  ++  +
Sbjct: 426 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 485

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             + ++E+      EM+  GI A+  +   +I A+ KA K  +     ++M   GV    
Sbjct: 486 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 545

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T  ++++GL   G  + A   F RM+ L  + +   YT +I   C    +E A K++  
Sbjct: 546 VTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDE 605

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M+ +   P +  F+ LI+G    G + ++ VL+  M E  I      +  L     + G 
Sbjct: 606 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE 665

Query: 460 -EDVLKFLQEKM--NLLVKEPLC 479
                KF  E +   +L +E LC
Sbjct: 666 LHQARKFFNEMIEKGILPEEVLC 688



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 4/242 (1%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+  +   +K+EE       M+  G++ N      ++ A  K+     A   F  M+D  
Sbjct: 481 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 540

Query: 197 IPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           +  +  TY +L++G  +   +  A + F  M+  G  P++  Y  ++D LC    ++ A 
Sbjct: 541 VEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAK 600

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M      P    ++ L+        +++A+     M +  I  D+ +Y +L+  F
Sbjct: 601 KLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGF 660

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV---FRRMIKLCEA 372
            +  +     +   +M  KG+ P    C  +L     RG+ DEA  +     RM    E 
Sbjct: 661 SQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYSFEF 720

Query: 373 DA 374
           DA
Sbjct: 721 DA 722


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 5/371 (1%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           SI+K + S P     TALD  G   SP +V+ +L + +  G  AF  F+WA  Q +Y H+
Sbjct: 113 SITKDLHSLPIEEARTALDDCGFIPSPNLVQKLLRRLQYDGKAAFRVFQWAGSQPDYSHT 172

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V  YH+MI  L   R++   W L+  M  + M+N +T  I++++YA      +A+ TF+ 
Sbjct: 173 VSVYHTMISILGVHRKFDKGWGLIRKMHERAMVNRQTLMIMIKRYAAAHDARKAIKTFHA 232

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-DPN 215
           M K+ +  +   F  LL ALC++  V +A+E+    K  +  ++K+++++L GW     +
Sbjct: 233 MDKFKLAADSDDFLCLLCALCRNMFVEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVD 292

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           + + + ++ EM +    PD  +Y  ++    KAG+  + + +   M      P   +Y+ 
Sbjct: 293 VYQVKRLWEEMSNLCITPDAFSYTTVICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNA 352

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +++    E  +++A++ F ++ + G   +   Y  LI   C+  K +  Y  L  M  +G
Sbjct: 353 VIYVLSKERCVKEALNLFNKIREMGFHPNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEG 412

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAF 394
             P     +     +   G      ++F +M +  C    +TY M I+  C   + E AF
Sbjct: 413 FVPTIDIYHAFFRFVENEGAI---CKLFDKMFENGCAPTMETYIMSIRRCCSWSDYENAF 469

Query: 395 KVWKYMKLKRF 405
           K+W  M+   F
Sbjct: 470 KLWNDMEKHWF 480



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 14/303 (4%)

Query: 153 TFNVMQKYG----VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
            F V Q  G     +  ++ ++ ++S L   +   K   +   M +R + + +T  I+++
Sbjct: 156 AFRVFQWAGSQPDYSHTVSVYHTMISILGVHRKFDKGWGLIRKMHERAMVNRQTLMIMIK 215

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            +    +  +A + F  M       D   +  ++  LC+   V+EA  ++    +  C P
Sbjct: 216 RYAAAHDARKAIKTFHAMDKFKLAADSDDFLCLLCALCRNMFVEEAEELIHF--NKKCYP 273

Query: 269 TSFIYSVLVHTYGVENRIEDAVDT---FLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
                S  V  YG  N   D       + EM    I  D   Y  +I  F KA KF +V 
Sbjct: 274 LE-TKSFNVILYGWCNIFVDVYQVKRLWEEMSNLCITPDAFSYTTVICCFSKAGKFYDVV 332

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           R+  +M  KG  PN +  N ++  L       EA  +F ++ ++    +A TYT +I + 
Sbjct: 333 RLYDEMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREMGFHPNAVTYTYLIYLL 392

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+  + E+A+     M ++ F+P++  +      + ++G +   C L + M E G  P+ 
Sbjct: 393 CRTWKPEEAYSYLDKMIMEGFVPTIDIYHAFFRFVENEGAI---CKLFDKMFENGCAPTM 449

Query: 445 ETF 447
           ET+
Sbjct: 450 ETY 452



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 20/317 (6%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAR 220
           V+   + FN +LS + K  +    +E    + D  FIP       LL     D      +
Sbjct: 101 VSNEGSGFNKVLS-ITKDLHSLPIEEARTALDDCGFIPSPNLVQKLLRRLQYD-----GK 154

Query: 221 EIFREMVDTGCNPD----IVTYGIMVDVLCKAGRVDEALGIVKSMD--STVCRPTSFIYS 274
             FR     G  PD    +  Y  M+ +L    + D+  G+++ M   + V R T  I  
Sbjct: 155 AAFRVFQWAGSQPDYSHTVSVYHTMISILGVHRKFDKGWGLIRKMHERAMVNRQTLMI-- 212

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y   +    A+ TF  M+K  + AD   +  L+ A C+ N F      L   N K
Sbjct: 213 -MIKRYAAAHDARKAIKTFHAMDKFKLAADSDDFLCLLCALCR-NMFVEEAEELIHFNKK 270

Query: 335 GVAPNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
                +++ N+IL G      +  +  R++  M  LC   DA +YT +I  F + G+   
Sbjct: 271 CYPLETKSFNVILYGWCNIFVDVYQVKRLWEEMSNLCITPDAFSYTTVICCFSKAGKFYD 330

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             +++  MK K F P++  ++ +I  L  +  V ++  L   + E G  P+  T+  L  
Sbjct: 331 VVRLYDEMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREMGFHPNAVTYTYLIY 390

Query: 453 LLIKEGR-EDVLKFLQE 468
           LL +  + E+   +L +
Sbjct: 391 LLCRTWKPEEAYSYLDK 407



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 94/217 (43%), Gaps = 4/217 (1%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPD 199
           +++  K  + V  ++ M+K G T NL  +N ++  L K + V++A  +F+ +++  F P+
Sbjct: 322 FSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREMGFHPN 381

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           + TY+ L+    +      A     +M+  G  P I  Y      +   G +     +  
Sbjct: 382 AVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPTIDIYHAFFRFVENEGAI---CKLFD 438

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M    C PT   Y + +      +  E+A   + +MEK+   AD +++  L+  F    
Sbjct: 439 KMFENGCAPTMETYIMSIRRCCSWSDYENAFKLWNDMEKHWFSADSSIHYLLLNGFLLNG 498

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           K +   +  ++M   G +   +   +  +  +GR  +
Sbjct: 499 KPEEACKCYREMKVNGFSLEPKIDKMFESWNVGRKHS 535


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 170/364 (46%), Gaps = 37/364 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++    +  KV+EAV  FN + ++ +  +   +  L+   C+++ + KA E+FD M
Sbjct: 199 TFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRM 258

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            KD   P+S TYS L+ G   +  +  A ++  EM + G  P + TY + +  LC  GRV
Sbjct: 259 VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRV 318

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+A+ +V+SM    C P+   Y+ ++       ++E A+  + +M K G++ +   YNAL
Sbjct: 319 DDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--- 368
           I   C   +F    ++   M   G   N++T N I+ GL G  + ++A  VF +M+K   
Sbjct: 379 INELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGP 438

Query: 369 ---------------------------------LCEADADTYTMMIKMFCQGGELEKAFK 395
                                             CE D  TY  +I  FC+GG+L+ A  
Sbjct: 439 SPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATS 498

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
            +  M      P+  T++ +I+G C +G +  +  L E M E G   S ET+  +   L 
Sbjct: 499 FFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLS 558

Query: 456 KEGR 459
           K  R
Sbjct: 559 KGNR 562



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 190/399 (47%), Gaps = 42/399 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++  E +V  Y   I SL  I +     +LV +M  K    +V+T+  I+    R  K+E
Sbjct: 295 EKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKME 354

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+  ++ M K G+  N   +N L++ LC       A +IFD M+    + +++TY+ ++
Sbjct: 355 LAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQII 414

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV------------------------- 242
           +G     ++ +A  +F +M+  G +P +VTY  ++                         
Sbjct: 415 KGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCE 474

Query: 243 ----------DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
                        CK G++D A      M      P  + Y+ ++  Y  E +I+ A+  
Sbjct: 475 PDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSL 534

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F  ME+NG  A +  YNA+I    K N+F    +    M  +G+ PN+ T   ++NGL  
Sbjct: 535 FERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCK 594

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
              T+ A+++F  M K  C  +A TYT +I   CQ G+++ A ++ +        P++ T
Sbjct: 595 NTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTE----NGCEPTIDT 650

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +S L++GLC +G  +++  L+E+M EKG+ PS E +  L
Sbjct: 651 YSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSL 689



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 5/346 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L    ++ I   + + M     L N +T+  I++    +  +E+A+  FN M
Sbjct: 374 TYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKM 433

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G +  +  +N L+    K   +  A      MK+    PD +TY  L+ G+ K   L
Sbjct: 434 LKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKL 493

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F EM+  G +P+  TY  M+D  CK G++D AL + + M+   C  +   Y+ +
Sbjct: 494 DSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAI 553

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +      NR  +A     +M + G+  +   Y +LI   CK       +++  +M  K  
Sbjct: 554 ISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNC 613

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            PN+ T   ++ GL   G+ D A R+       CE   DTY+ ++   C+ G   +A ++
Sbjct: 614 LPNAHTYTSLIYGLCQEGKVDAAERLTENG---CEPTIDTYSTLVSGLCREGRSNEASQL 670

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            + MK K   PSM  +  L+   C    V  +  +   M  KG +P
Sbjct: 671 VENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQP 716



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 178/409 (43%), Gaps = 14/409 (3%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           + P    +  L++    + P  V  ++    N  T A  FF W  K+  Y+H +  + SM
Sbjct: 52  TDPHWPKNPELNRLASTLRPHHVSKIINTHINTDT-ALQFFYWISKRHFYKHDMGCFVSM 110

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           +  L K +       ++      R+L ++      R    +++V + ++  +        
Sbjct: 111 LNRLVKDK-------ILAPADHVRILMIKA----CRNEDELKRVTDFLHGISSSDSGLFG 159

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREI 222
             L +FN LL  L K   V  AQ ++  +    + P   T++ ++    K   +  A  +
Sbjct: 160 FTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLV 219

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F ++      PD  TY  ++   C+  ++D+A  +   M    C P S  YS L++    
Sbjct: 220 FNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCN 279

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           E RI +A+D   EM + GI   V  Y   I + C   +  +   +++ M  KG +P+ +T
Sbjct: 280 EGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQT 339

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
              I++GL   G+ + A  ++ +M+K     +  TY  +I   C  G    A K++ +M+
Sbjct: 340 YTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWME 399

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
               + +  T++ +I GL     +  + V+   M++ G  P+  T+  L
Sbjct: 400 GHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTL 448



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 138/328 (42%), Gaps = 42/328 (12%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y +MI+   K  +  +   L   M       ++ET+  I+   ++  +  EA      M
Sbjct: 514 TYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKM 573

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
            + G+  N   +  L++ LCK+     A +IF  M K   +P++ TY+ L+ G  ++  +
Sbjct: 574 TEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKV 633

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A      + + GC P I TY  +V  LC+ GR +EA  +V++M               
Sbjct: 634 DAAER----LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENM--------------- 674

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                               ++ G+   + +Y +L+ A CK+ K      +   M  KG 
Sbjct: 675 --------------------KEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGF 714

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+     +++  L G    +EA  +F+ ++ K   +D   +T+++    Q G+ +   K
Sbjct: 715 QPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMK 774

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKG 423
               M+ +   PS+HT+ +L   L   G
Sbjct: 775 FLYLMESRNCTPSLHTYIILARELSKVG 802


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 192/386 (49%), Gaps = 14/386 (3%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  V+ ++ +I  L +  +      L++ M  +    +  T+  +M    R+ +V+EA  
Sbjct: 272 EPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARA 331

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF--DCMKDRFIPDSKTYSILLEGW 210
             N +       N   +N L+S    S    +A+++   + +   + PD+ T++I+++G 
Sbjct: 332 LLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGL 387

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  A E+  EMV     P+++TY I+++  CK GR++EA  IV SM +      +
Sbjct: 388 VKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNT 447

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+     +  IE+A+  F EM   G   D+  +N+LI   CK +K +    +  D
Sbjct: 448 VGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHD 507

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  +GV  N+ T N +++  + R    +A+++   M+ + C  D  TY  +IK  C+ G 
Sbjct: 508 MFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGA 567

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +EK   +++ M  K   P++ + ++LI+GLC  G V+D+   L+DMI +G+ P   T+  
Sbjct: 568 VEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNS 627

Query: 450 LRKLLIKEGREDVLKFLQEKMNLLVK 475
           L   L K G       +QE  NL  K
Sbjct: 628 LINGLCKMGH------VQEASNLFNK 647



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 14/347 (4%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V TF ++M+    V +V+ A      M K+G   N   +  L+ ALC++  V +A ++  
Sbjct: 205 VYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQL-- 262

Query: 191 CMKDRFI----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
            ++D F+    PD +T++ ++ G  +   +  A ++   M+  G + D +TYG ++  LC
Sbjct: 263 -LEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC 321

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD-TFLEMEKNGILADV 305
           + G+VDEA    +++ + +  P + +Y+ L+  Y    R E+A D  +  M   G   D 
Sbjct: 322 RMGQVDEA----RALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDA 377

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             +N +I    K     +   +L +M +K   PN  T  I++NG   +G  +EA  +   
Sbjct: 378 YTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNS 437

Query: 366 M-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M  K    +   Y  +I   C+ G +E+A +++  M  K   P ++TF+ LINGLC    
Sbjct: 438 MSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHK 497

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQEKM 470
           + ++  L  DM  +G+  +  T+  L    L+++  +   K + E +
Sbjct: 498 MEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEML 544



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 150/328 (45%), Gaps = 3/328 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
           YE     ++ MI+ L K        +L+N M  KR   NV T+ I++  + +  ++EEA 
Sbjct: 373 YEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA 432

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
              N M   G++ N   +N L+ ALCK  N+ +A ++F  M  +   PD  T++ L+ G 
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K+  +  A  ++ +M   G   + VTY  +V        + +A  +V  M    C   +
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDN 552

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+        +E  +  F EM   GI   +   N LI   C+  K  +  + L+D
Sbjct: 553 ITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M  +G+ P+  T N ++NGL   G   EA  +F ++  +    DA TY  +I   C  G 
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
              A  +        FIP+  T+S+LIN
Sbjct: 673 FNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 176/380 (46%), Gaps = 40/380 (10%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKY 141
            F+ A  Q+ Y H+  A + +I+ L  +  ++++  L+  M+ + +L  E+ F +IM+ Y
Sbjct: 85  LFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHY 144

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
            +     +A  T  ++  +GV                          + C      P  K
Sbjct: 145 GKAGLPGQA--TRLLLDMWGV--------------------------YSC-----DPTFK 171

Query: 202 TYSILLEGWGKDPNLPR-AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           +Y+++L+    D + PR A  +F +M+  G +P + T+G+++  LC    VD A  +++ 
Sbjct: 172 SYNVVLDIL-VDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRD 230

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M    C P S IY  L+H     NR+ +A+    +M       DV  +N +I   C+A +
Sbjct: 231 MAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGR 290

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380
                ++L  M  +G + ++ T   +++GL   G+ DEA  +     K+   +   Y  +
Sbjct: 291 IHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLN---KIPNPNTVLYNTL 347

Query: 381 IKMFCQGGELEKAFK-VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           I  +   G  E+A   ++  M +  + P  +TF+++I+GL  KG +  +  LL +M+ K 
Sbjct: 348 ISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKR 407

Query: 440 IRPSGETFGKLRKLLIKEGR 459
             P+  T+  L     K+GR
Sbjct: 408 FEPNVITYTILINGFCKQGR 427



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN ++      +  +    V  DM S+GV+P   T  +++  L    E D A  + R M 
Sbjct: 173 YNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMA 232

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K  C  ++  Y  +I   C+   + +A ++ + M L    P + TF+ +I+GLC  G + 
Sbjct: 233 KHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIH 292

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++  LL+ M+ +G      T+G L   L + G+ D  + L  K+
Sbjct: 293 EAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKI 336



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM--IK 368
           LI        FK + ++LK M  +G+        +I+      G   +A R+   M  + 
Sbjct: 105 LIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVY 164

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            C+    +Y +++ +   G     A  V+  M  +   P+++TF V++  LC    V  +
Sbjct: 165 SCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSA 224

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           C LL DM + G  P+   +  L   L +  R      L E M L+  EP
Sbjct: 225 CSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEP 273


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 183/358 (51%), Gaps = 6/358 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  ++ ++ ++ ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 80  SVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTF 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + K G+  ++  F  LL  LC    V +A ++F  +     PD  T++ L+ G  ++ 
Sbjct: 140 GKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR---PDVLTFTTLMNGLCREG 196

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIY 273
            +  A  +   MV+ G  PD +TYG  VD +CK G    AL +++ M+  +  +P   IY
Sbjct: 197 RVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIY 256

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++     + R  D+ + F+EM+  GI  ++  YN +IG FC + ++    R+L++M  
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + ++PN  T N ++N  +  G+  EA  ++  M+ +    +  TY  MI  FC+   L+ 
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  ++  M  K   P + TF+ LI+G C    + D   LL +M  +G+  +  T+  L
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 434



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 175/384 (45%), Gaps = 27/384 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--------NVETFCIIMRKYARVQKVEEA 150
            Y + ++ + K      M D V+A+   R +        NV  +  I+    +  +  ++
Sbjct: 219 TYGTFVDGMCK------MGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
              F  MQ  G+  N+  +N ++   C S     AQ +   M +R I P+  TY+ L+  
Sbjct: 273 HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINA 332

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K+     A E++ EM+  G  P+ +TY  M+D  CK  R+D A  +   M +  C P 
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            F ++ L+  Y    RI+D ++   EM + G++A+   YN LI  FC          + +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------CEADADTY 377
            M S GV P+  TCN +L+GL   G+  +A  +F+ M K              E D  TY
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I      G+  +A ++++ M  +  +P   T+S +I+GLC +  + ++  +   M  
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
           K   P+  TF  L     K GR D
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVD 596



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 14/375 (3%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A    +  E+  + + +V  Y ++I+ L K  ++    +L   M+ K +  N+ T+  ++
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
             +    +   A      M +  ++ N+  +N L++A  K     +A E++D M  R  I
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGII 355

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ TY+ +++G+ K   L  A ++F  M   GC+PD+ T+  ++D  C A R+D+ + +
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M        +  Y+ L+H + +   +  A+D   +M  +G+  D+   N L+   C 
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 318 ANKFKNVYRVLKDMNSK-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             K K+   + K M              GV P+  T NI++ GLI  G+  EA  ++  M
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
             +    D  TY+ MI   C+   L++A +++  M  K F P++ TF+ LING C  G V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 426 SDSCVLLEDMIEKGI 440
            D   L  +M  +GI
Sbjct: 596 DDGLELFCEMGRRGI 610



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 13/276 (4%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  + ++I+     ++     +L++ M R   + N  T+  ++  +  V  +  A+    
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------PDSKTY 203
            M   GV  ++   N LL  LC +  ++ A E+F  M+   +            PD  TY
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +IL+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    ++ L++ Y    R++D ++ F EM + GI+AD  +Y  LI  F K      
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNING 632

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
              + ++M S GV P++ T   +L G   + E + A
Sbjct: 633 ALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERA 668



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 120/258 (46%), Gaps = 6/258 (2%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++F +M+ +   P ++ +  ++  + +  R D  + + + M+    R   + ++
Sbjct: 61  GLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFT 120

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+  +   +++  A+ TF ++ K G+  DV  +  L+   C  ++         D+  +
Sbjct: 121 ILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL----DLFHQ 176

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKA 393
              P+  T   ++NGL   G   EA  +  RM++   + D  TY   +   C+ G+   A
Sbjct: 177 ICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSA 236

Query: 394 FKVWKYMK-LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             + + M+ +    P++  +S +I+GLC  G  SDS  L  +M +KGI P+  T+  +  
Sbjct: 237 LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIG 296

Query: 453 LLIKEGREDVLKFLQEKM 470
                GR    + L ++M
Sbjct: 297 GFCISGRWSAAQRLLQEM 314



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++       K  EA   +  M   G+  +   ++ ++  LCK   + +A ++F
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  + F P+  T++ L+ G+ K   +    E+F EM   G   D + Y  ++    K 
Sbjct: 568 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 627

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
           G ++ AL I + M S+   P +     ++  +  +  +E AV    ++++
Sbjct: 628 GNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQR 677


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 203/397 (51%), Gaps = 42/397 (10%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           M+  L + R   + +     +R K   NV TF +++    +  K+ +A      M+ YG 
Sbjct: 195 MVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGY 254

Query: 163 TQNLAAFNGLLSALCK---SKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPR 218
           + N+ ++N L+   CK   +  + KA  +   M ++   P+  T++IL++G+ KD NLP 
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPG 314

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST-------------- 264
           + ++F+EM+D    P+++TY  +++ LC  G+++EA+G+   M S               
Sbjct: 315 SLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLIN 374

Query: 265 -VC--------------------RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
             C                    RPT+ +Y++L+  Y    +I+D      EME+ GI+ 
Sbjct: 375 GFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVP 434

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           DV  YN LI   C+    +   ++   + +KG+ P+  T +I++ G   RGE+ +A  + 
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLL 493

Query: 364 RRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCD 421
           + M K+  +    TY +M+K +C+ G L+ A  +   M K +R   ++ +++VL+ G   
Sbjct: 494 KEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQ 553

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           KG + D+ +LL +M+EKG+ P+  T+  +++ ++ +G
Sbjct: 554 KGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKG 590



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 127/313 (40%), Gaps = 76/313 (24%)

Query: 221 EIFREMVDTGCNPDI-------------------VTYGIM---------------VDVLC 246
           E+FR+++ +  NPD+                   +T+ ++               +D   
Sbjct: 69  ELFRQLISSELNPDLCLRYYTWLVKNRDISVSLELTFKLLHSLANAKRYSKIRSFLDGFV 128

Query: 247 KAGRVDEALGIVK--SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF----------- 293
           + G   +   I    SM   VC   S I  +LV  Y   +R E   + F           
Sbjct: 129 RNGSDHQVHSIFHAISMCDNVC-VNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLS 187

Query: 294 ------------------------LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
                                    EM +  I  +V  +N +I A CK  K      V++
Sbjct: 188 AMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVME 247

Query: 330 DMNSKGVAPNSRTCNIILNG---LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFC 385
           DM   G +PN  + N +++G   L G G+  +A  V + M++     +  T+ ++I  F 
Sbjct: 248 DMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFW 307

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +   L  + KV+K M  +  IP++ T++ LINGLC+ G ++++  + + M+  G++P+  
Sbjct: 308 KDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLI 367

Query: 446 TFGKLRKLLIKEG 458
           T+  L     K G
Sbjct: 368 TYHSLINGFCKNG 380



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V  Y+ +I  L +    +    L + +  K + ++ TF I+M  Y    +  +A      
Sbjct: 436 VGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKE 495

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDP 214
           M K G+      +N ++   CK  N++ A  +   M+   R   +  +Y++LL+G+ +  
Sbjct: 496 MSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            L  A  +  EM++ G  P+ +TY I+ + +   G V +  G
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEG 597


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 169/325 (52%), Gaps = 2/325 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++  ++  Y +V +++  +     MQ  G+  N   +NG++  LCK+  V +A+ + 
Sbjct: 287 DVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVL 346

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + + +   PD   Y+ L++G+ K  N+  A  +F EM     +PD +TY  ++  LC+ 
Sbjct: 347 REMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQT 406

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GRV EA  +   M      P    Y+ L+  Y  E ++++A     +M + G+  ++  Y
Sbjct: 407 GRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY 466

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
            AL    CK  +      +L +M  KG+  N  T N ++NGL   G  D+A ++ + M +
Sbjct: 467 TALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV 526

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                DA TYT ++  +C+  E+ +A ++ + M  +   P++ TF+VL+NG C  G++ D
Sbjct: 527 AGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLED 586

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRK 452
              LL+ M+EKGI P+  T+  L K
Sbjct: 587 GEKLLKWMLEKGIMPNATTYNSLIK 611



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 157/321 (48%), Gaps = 2/321 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           +  ++  + ++  V  A   F+ MQK  ++ +   +  ++  LC++  V +A ++F  M 
Sbjct: 361 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 420

Query: 194 -DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
             R  PD  TY+ L++G+ K+  +  A  +  +M+  G  P+IVTY  + D LCK G VD
Sbjct: 421 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD 480

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  ++  M         + Y+ LV+       I+ AV    +ME  G   D   Y  L+
Sbjct: 481 TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 540

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
            A+CK+ +    + +L+ M  + + P   T N+++NG    G  ++  ++ + M+ K   
Sbjct: 541 DAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM 600

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +A TY  +IK +C    +    ++++ M  K  +P  +T+++LI G C    + ++  L
Sbjct: 601 PNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFL 660

Query: 432 LEDMIEKGIRPSGETFGKLRK 452
             DM+ KG   +  ++  L K
Sbjct: 661 HRDMVGKGFNLTVSSYNALIK 681



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 159/331 (48%), Gaps = 3/331 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-KNVRKAQEIFDCM 192
           F I  +       ++EA   F+ M  YG+  ++ + N  +S L +    ++ A ++F   
Sbjct: 185 FDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEF 244

Query: 193 KDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +  +  ++ +Y+I+     +   +  A ++  +M   GC PD+++Y  +++  C+ G +
Sbjct: 245 PEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGEL 304

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
              L +++ M     +P  + Y+ ++       ++ +A     EM   GI  D  +Y  L
Sbjct: 305 QRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 364

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FCK     + YR+  +M  + ++P+  T   ++ GL   G   EA ++F  M+ K  
Sbjct: 365 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 424

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D  TYT +I  +C+ G++++AF +   M      P++ T++ L +GLC  G V  +  
Sbjct: 425 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 484

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           LL +M  KG+  +  T+  L   L K G  D
Sbjct: 485 LLHEMCRKGLELNIYTYNSLVNGLCKAGNID 515



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 159/323 (49%), Gaps = 3/323 (0%)

Query: 119 LVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           L + M  KR+   E T+  ++  Y +  K++EA    N M + G+T N+  +  L   LC
Sbjct: 415 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 474

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K   V  A E+   M  + +  +  TY+ L+ G  K  N+ +A ++ ++M   G +PD V
Sbjct: 475 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 534

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  ++D  CK+  +  A  +++ M     +PT   ++VL++ + +   +ED       M
Sbjct: 535 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 594

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + GI+ +   YN+LI  +C  N  +    + + M +KGV P+  T NI++ G       
Sbjct: 595 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 654

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA+ + R M+ K       +Y  +IK F +  +  +A ++++ M+ +  +     +++ 
Sbjct: 655 KEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714

Query: 416 INGLCDKGIVSDSCVLLEDMIEK 438
            +   D+G +  +  L ++ IEK
Sbjct: 715 ADINYDEGKMELTLELCDEAIEK 737



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I+   K  + +  + L N M    +  N+ T+  +     +  +V+ A    + M
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 489

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGKD 213
            + G+  N+  +N L++ LCK+ N+ +A ++   MKD     F PD+ TY+ L++ + K 
Sbjct: 490 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKL---MKDMEVAGFHPDAVTYTTLMDAYCKS 546

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + RA E+ R+M+D    P +VT+ ++++  C +G +++   ++K M      P +  Y
Sbjct: 547 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 606

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILAD----------------------------- 304
           + L+  Y + N +    + +  M   G++ D                             
Sbjct: 607 NSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVG 666

Query: 305 ------VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
                 V+ YNALI  F K  KF     + + M  +G+  +    NI
Sbjct: 667 KGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNI 713


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 176/334 (52%), Gaps = 6/334 (1%)

Query: 130 NVETFCIIMRKYAR-VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           NV T+  ++    R ++++E A      M   G   ++ ++N L+  L + + V +A ++
Sbjct: 221 NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKL 280

Query: 189 F-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F   ++  + P+  TY+IL++G  K+  +  A E+F  +V  G  PD +TY + +D LCK
Sbjct: 281 FGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 340

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AGRV++AL ++K MD   C P    ++ +++    E R+++A      ME  G   +   
Sbjct: 341 AGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAIS 400

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI---GRGETDEAYRVFR 364
           +N LI   C+A K+K      K+M  +GV P   T NI+++GL      G   EA  +F 
Sbjct: 401 FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFD 460

Query: 365 RMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            MI+     D  TY+ +I    + G+L+ A ++   M+ K  IP+++T++ LI+GLC   
Sbjct: 461 AMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLD 520

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
            V ++  L   M+EKG  P   T+G +   L K+
Sbjct: 521 KVDEALELFVAMVEKGCVPDTITYGTIISALCKQ 554



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 190/388 (48%), Gaps = 13/388 (3%)

Query: 93  YEHSVRAYHS-------MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           Y+  VR Y         ++ SL K  + +     V  +  K + ++ TF I +    R  
Sbjct: 5   YDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRAS 64

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYS 204
           ++ +A   F+ M+K+G   N   +N LLS LC    +  AQ +++ M K  + PD  TY+
Sbjct: 65  RIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYN 124

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            LL G+ K   L  A +IF   V  G  PD+VTY  +++  CKA ++DEA  I++ M S 
Sbjct: 125 TLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE 184

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA-NKFKN 323
              P    Y+ LV+      R+++A    L ++K G   +V  Y+ LI   C+   + ++
Sbjct: 185 SLVPDVVTYNSLVNGLCKNGRVDEA--RMLIVDK-GFSPNVITYSTLISGLCRELRRLES 241

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIK 382
             ++L+ M   G  P+  + N +++GL       EA ++F  +++   E +  TY ++I 
Sbjct: 242 ARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILID 301

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              +   + +AF+++  +      P   T++V I+GLC  G V D+ ++L+DM EKG  P
Sbjct: 302 GLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP 361

Query: 443 SGETFGKLRKLLIKEGREDVLKFLQEKM 470
              +   +   L KE R D  + L   M
Sbjct: 362 DVVSHNAVINGLCKEKRVDEAEVLLSGM 389



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 182/389 (46%), Gaps = 50/389 (12%)

Query: 91  QNYEHSVRAYHSMIESLAK-IRQYQIMWDLVNAMRTKRMLN-----VETFCIIMRKYARV 144
           + +  +V  Y ++I  L + +R+ +    L+  M    +LN     + ++  ++   AR 
Sbjct: 216 KGFSPNVITYSTLISGLCRELRRLESARQLLEKM----VLNGCKPDIVSYNALIHGLARE 271

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTY 203
           Q V EA+  F  + + G    +  +N L+  L K   V +A E+F  + K    PD+ TY
Sbjct: 272 QGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITY 331

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           ++ ++G  K   +  A  + ++M + GC PD+V++  +++ LCK  RVDEA  ++  M++
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 391

Query: 264 TVCRPTSFIYSVL----------------------------VHTYGV----------ENR 285
             C P +  ++ L                            V TY +          E R
Sbjct: 392 KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGR 451

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           I++A+  F  M + G + DV  Y+ALI    KA K  +  R+L  M +KG  PN  T N 
Sbjct: 452 IKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNS 511

Query: 346 ILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++GL G  + DEA  +F  M+ K C  D  TY  +I   C+   ++KA  ++       
Sbjct: 512 LISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAG 571

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
            +P+   +  LI+GLC    V ++  LL+
Sbjct: 572 VVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 132/285 (46%), Gaps = 9/285 (3%)

Query: 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDV 244
             ++D +   + PD+ T  ILL    K   + +A     +++  G C  DI T+ I +  
Sbjct: 2   HTVYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC--DISTFNIYISG 59

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           LC+A R+ +A  +   M      P    Y+ L+       R+ DA   +  M K G   D
Sbjct: 60  LCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  YN L+  FCK  K     ++      +G  P+  T N ++NG     + DEA R+ +
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 179

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           RM+ +    D  TY  ++   C+ G +++A  +   +  K F P++ T+S LI+GLC + 
Sbjct: 180 RMVSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCREL 236

Query: 424 IVSDSC-VLLEDMIEKGIRPSGETFGKLRKLLIKE-GREDVLKFL 466
              +S   LLE M+  G +P   ++  L   L +E G  + LK  
Sbjct: 237 RRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLF 281



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 5/153 (3%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+  I+ D L K R  G +  A   F  A  ++     V  Y ++I+ L K  +      
Sbjct: 434 VTYNILVDGLCKARQEGRIKEAITLFD-AMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 492

Query: 119 LVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           L+ AM  K  + NV T+  ++     + KV+EA+  F  M + G   +   +  ++SALC
Sbjct: 493 LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALC 552

Query: 178 KSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEG 209
           K + V KA  +FD  ++   +P S  Y  L++G
Sbjct: 553 KQEMVDKALALFDGSLEAGVVPTSGMYFSLIDG 585


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 191/378 (50%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK+ ++ ++  L   M+   M  N  T+ I++  + R  ++  A+   
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVL 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M K G   N+   + LL+  C SK + +A  + D M    + P++ T++ L+ G    
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+VTYG++V+ LCK G  D A  ++  M+     P   IY
Sbjct: 200 NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIY 259

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        ++DA++ F EME  GI  +V  Y++LI   C   ++ +  R+L DM  
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + P+  T + +++  +  G+  EA +++  M+K   +    TY+ +I  FC    L++
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++++M  K   P + ++S LI G C    V +   L  +M ++G+  +  T+  L +
Sbjct: 380 AKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQ 439

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G  D+ + + ++M
Sbjct: 440 GLFQAGDCDMAQEIFKEM 457



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 186/374 (49%), Gaps = 4/374 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  L K     + + L+N M   ++   V  +  I+    + + +++A+  F  M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM 282

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           +  G+  N+  ++ L+S LC       A  +   M +R I PD  T+S L++ + K+  L
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +++ EMV    +P IVTY  +++  C   R+DEA  + + M S  C P    YS L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+++ ++ F EM + G++ +   Y  LI    +A        + K+M S GV
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N +L+GL   G+ ++A  VF  + +   E    TY +MI+  C+ G++E  + 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P +  ++ +I+G C KG   ++  L ++M E G  P+   +  L +  +
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 456 KEG-REDVLKFLQE 468
           ++G RE   + ++E
Sbjct: 583 RDGDREASAELIKE 596



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 174/353 (49%), Gaps = 3/353 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
           Y+ +   ++++I  L    +      L++ M  K    ++ T+ +++    +    + A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
              N M++  +   +  +  ++  LCK+K++  A  +F  M+ + I P+  TYS L+   
Sbjct: 242 ILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                   A  +  +M++   NPD+ T+  ++D   K G++ EA  +   M      P+ 
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             YS L++ + + +R+++A   F  M       DV  Y+ LI  FCKA +      + ++
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFRE 421

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M+ +G+  N+ T   ++ GL   G+ D A  +F+ M+      +  TY  ++   C+ G+
Sbjct: 422 MSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           LEKA  V++Y++  +  P+++T++++I G+C  G V D   L  ++  KG++P
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 137/268 (51%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    +++EA   F  M       ++ +++ L+   CK+K V +  E+F
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELF 419

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+ L++G  +  +   A+EIF+EMV  G  P+I+TY  ++D LCK 
Sbjct: 420 REMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++A+ + + +  +   PT + Y++++       ++ED  D F  +   G+  DV  Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC+    +    + K+M   G  PNS   N ++   +  G+ + +  + + M +
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM-R 598

Query: 369 LC--EADADTYTMMIKMFCQGGELEKAF 394
            C    DA T  ++  M    G L+K+F
Sbjct: 599 SCGFAGDASTIGLVTNML-HDGRLDKSF 625



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 126/269 (46%), Gaps = 1/269 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K R  P    +S LL    K         +  +M + G   +  TY I+++  C+  ++
Sbjct: 73  VKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQL 132

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL ++  M      P     S L++ Y    RI +AV    +M   G   +   +N L
Sbjct: 133 PLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTL 192

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I      NK      ++  M +KG  P+  T  +++NGL  RG+TD A+ +  +M +   
Sbjct: 193 IHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKL 252

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E     YT +I   C+   ++ A  ++K M+ K   P++ T+S LI+ LC+ G  SD+  
Sbjct: 253 EPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL DMIE+ I P   TF  L    +KEG+
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGK 341



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 120/245 (48%), Gaps = 1/245 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +F EMV +   P I+ +  ++  + K  + D  + + + M +       + YS+
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI 121

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++ +   +++  A+    +M K G   ++   ++L+  +C + +      ++  M   G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
             PN+ T N +++GL    +  EA  +  RM+ K C+ D  TY +++   C+ G+ + AF
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +   M+  +  P +  ++ +I+GLC    + D+  L ++M  KGIRP+  T+  L   L
Sbjct: 242 ILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301

Query: 455 IKEGR 459
              GR
Sbjct: 302 CNYGR 306



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 269 TSFIYSVLVHTYGV-ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           TS+ Y   +   G+ E +++DAV  F EM K+     +  ++ L+ A  K NKF  V  +
Sbjct: 44  TSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISL 103

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQ 386
            + M + G+  N  T +I++N    R +   A  V  +M+KL  E +  T + ++  +C 
Sbjct: 104 GEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH 163

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              + +A  +   M +  + P+  TF+ LI+GL      S++  L++ M+ KG +P   T
Sbjct: 164 SKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVT 223

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +G +   L K G  D+   L  KM     EP
Sbjct: 224 YGVVVNGLCKRGDTDLAFILLNKMEQGKLEP 254


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 181/360 (50%), Gaps = 3/360 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  + ++  Y  ++  L K     + ++L+N M   ++  NV  +  ++    + +  +
Sbjct: 218 QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHED 277

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+  F  M+  GV  N+  ++ L+S LC  +    A  +   M +R I P+  T++ L+
Sbjct: 278 DALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALI 337

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K+  L  A +++ EM+    +PDI TY  +++  C   R+DEA  + + M S  C 
Sbjct: 338 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 397

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++ +    RI++ V+ F EM + G++ +   Y  LI  F +A    N   V
Sbjct: 398 PNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 457

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            K M S GV PN  T N +L+GL   G+ ++A  VF  + +   E    TY +MI+  C+
Sbjct: 458 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 517

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G++E  + ++  + LK   P +  ++ +I+G C KG+  ++  L   M E G  P   T
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 183/358 (51%), Gaps = 3/358 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK++++ ++  L   M R     N+ T+ I++  + R  ++  A+   
Sbjct: 84  SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC P++VTYG++V+ LCK G +D A  ++  M++        IY
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIY 263

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++ +       +DA++ F EME  G+  +V  Y++LI   C   ++ +  R+L DM  
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T N +++  +  G+  EA +++  MIK   + D  TY+ +I  FC    L++
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A  +++ M  K   P++ T++ LING C    + +   L  +M ++G+  +  T+  L
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 1/269 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K R +P    ++ LL    K         +  +M   G + ++ TY I+++  C+  ++
Sbjct: 77  VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 136

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL ++  M      P+    S L++ Y    RI DAV    +M + G   D   +  L
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 196

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I      NK      ++  M  +G  PN  T  +++NGL  RG+ D A+ +  +M     
Sbjct: 197 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 256

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           EA+   Y+ +I   C+    + A  ++  M+ K   P++ T+S LI+ LC+    SD+  
Sbjct: 257 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASR 316

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL DMIE+ I P+  TF  L    +KEG+
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGK 345



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++DA+  F  M K+  L  +  +N L+ A  K  KF  V  + + M   G++ N  T N
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I++N    R +   A  +  +M+KL  E    T + ++  +C G  +  A  +   M   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            + P   TF+ LI+GL      S++  L++ M+++G +P+  T+G +   L K G  D+ 
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 464 KFLQEKM 470
             L  KM
Sbjct: 245 FNLLNKM 251


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 183/374 (48%), Gaps = 4/374 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIM 138
           A+  F+ A ++    +SV  Y S+I+ L K       + L  N + T    N   +  ++
Sbjct: 445 AYEMFETASQRGCNPNSV-TYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
           R +    + E+    F  M + G   +L   N  +  + K+ +V K + IF+ +K   F+
Sbjct: 504 RNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL 563

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD ++YSIL+ G  K         IF  M   G   D   Y  +VD  CK+G++D+A  +
Sbjct: 564 PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEV 623

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M      PT   Y  ++      +R+++A   F E +  GI  +V +Y++LI  F K
Sbjct: 624 LEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGK 683

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
             +    Y +L++M  KG+ PN  T N +++ L+   E +EA   F+ M ++ C  +  T
Sbjct: 684 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYT 743

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+++I   C+  +  KAF  W+ M+ +  +P++ T++ +I GL   G ++D+C L E   
Sbjct: 744 YSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFK 803

Query: 437 EKGIRPSGETFGKL 450
             G  P   +F  L
Sbjct: 804 ANGGTPDAASFNAL 817



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 188/375 (50%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       Q++  + L++ ++ +  + +V +F  I+    + +KV+EA+  F  M
Sbjct: 324 AYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM 383

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +K     N + +N ++  LC +  V +A  I D M+     P+  T +I+++   K    
Sbjct: 384 KK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKF 442

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+F      GCNP+ VTY  ++D L K G VD+A  + ++M  T       +Y+ L
Sbjct: 443 EPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSL 502

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  + +  R ED    F EM + G   D+ + N  +    KA   +    + +D+   G 
Sbjct: 503 IRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGF 562

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFK 395
            P+ R+ +I+++GL   G+  E   +F  M +   A DA  Y  ++  FC+ G+L+KA++
Sbjct: 563 LPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYE 622

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V + MK+KR  P++ T+  +I+GL     + ++ +L E+   KGI  +   +  L     
Sbjct: 623 VLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFG 682

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E+M
Sbjct: 683 KVGRIDEAYLILEEM 697



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 183/435 (42%), Gaps = 72/435 (16%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           SV +++S++  L K R+      L  AM+     N  T+ II+       KVEEA    +
Sbjct: 356 SVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRD 415

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M+  G+  NL   N ++  LCK+K    A E+F+    R   P+S TY  L++G GK  
Sbjct: 416 EMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKG 475

Query: 215 NLPRAREIFREMVDTG-----------------------------------CNPDIVTYG 239
           N+  A  +F  M+DTG                                   C PD+    
Sbjct: 476 NVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLN 535

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +D + KAG V++   I + +      P    YS+L+H      +  +    F  M++ 
Sbjct: 536 TYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQ 595

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D   YNA++  FCK+ K    Y VL++M  K V P   T   I++GL      DEA
Sbjct: 596 GFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEA 655

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV---------------------- 396
           Y +F     K  E +   Y+ +I  F + G +++A+ +                      
Sbjct: 656 YMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 715

Query: 397 -------------WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                        ++ MK  +  P+ +T+S+LINGLC     + + V  ++M ++G+ P+
Sbjct: 716 LVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPN 775

Query: 444 GETFGKLRKLLIKEG 458
             T+  +   L K G
Sbjct: 776 VVTYTTMIAGLAKVG 790



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 184/410 (44%), Gaps = 17/410 (4%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           VL   RN  +LA  FF  +     +     AY++++  L+         DL    +    
Sbjct: 87  VLRTLRNP-SLAAPFFLASSAASPHPLPADAYNAVLPFLSH--------DLAAMEKVLEE 137

Query: 129 LNVETFCI-------IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           ++V  + +       ++    R +++++A      M++       +A+  L+ A+ +++ 
Sbjct: 138 MSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQ 197

Query: 182 VRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
             +A E+   M++  +      ++ L+    ++  +  A  +  E+  +   PDIV Y +
Sbjct: 198 PERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNV 257

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
            +D   KAG VD A      + S   +P    Y+ ++       R+ +A + F +ME   
Sbjct: 258 CIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETER 317

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
            +     YN +I  +  A +F+N Y++L  +  +G  P+  + N IL  L  + + DEA 
Sbjct: 318 AVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEAL 377

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
            +F  M K  E ++ TY ++I M C  G++E+A+ +   M+     P++ T +++++ LC
Sbjct: 378 TLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLC 437

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
                  +  + E   ++G  P+  T+  L   L K+G  D    L E M
Sbjct: 438 KAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 130/277 (46%), Gaps = 2/277 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K   +   VR+Y  +I  L K  Q +    + +AM+ +   L+   +  ++  + +  K+
Sbjct: 558 KGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKL 617

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSIL 206
           ++A      M+   V   +A +  ++  L K   + +A  +F+  K + I  +   YS L
Sbjct: 618 DKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSL 677

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+GK   +  A  I  EM+  G  P++ T+  ++D L KA  ++EAL   +SM    C
Sbjct: 678 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKC 737

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P ++ YS+L++      +   A   + EM+K G++ +V  Y  +I    K     +   
Sbjct: 738 SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACS 797

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           + +   + G  P++ + N ++ G+       EAY VF
Sbjct: 798 LFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVF 834


>gi|115475660|ref|NP_001061426.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|37806221|dbj|BAC99723.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|37806377|dbj|BAC99889.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623395|dbj|BAF23340.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|125602810|gb|EAZ42135.1| hypothetical protein OsJ_26694 [Oryza sativa Japonica Group]
          Length = 528

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 172/359 (47%), Gaps = 6/359 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           A+H  I +  K R++ + W +V  M  + +L      I+M +YA   +V +A+ TF+ M+
Sbjct: 145 AWHLTIWAAGKARRFDLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAME 204

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-GKDPNLP 217
           K+    +   F  LL ALCK+KN+  A+E+    K  F   ++ ++I+L+GW     ++ 
Sbjct: 205 KFKTEADQTVFYSLLRALCKNKNIEDAEELLLVRKKFFPLTAEGFNIILDGWCNVITDIA 264

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+ I+REM +    PD  +Y +MV    K G + + L +   M      P+  +Y+ L+
Sbjct: 265 EAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLI 324

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +    EN ++D  + F  +   G+  +V  YN++I   C++ K      VL+DM  KG+ 
Sbjct: 325 YVLTKENCMKDVQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIV 384

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P   T +  L     +   DE  +  ++M    C   +DT+ M+I  F Q  E   A K+
Sbjct: 385 PTILTYHTFLR----QENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKL 440

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           W  MK     PS   +  ++ GL   G +  +    ++M E G     +   + R  L+
Sbjct: 441 WNEMKRYDIRPSYSHYMSVVQGLIKHGCMQRALEYYDEMKENGFASDPKLEKEFRTFLL 499



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 4/228 (1%)

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           KA R D A  +V+ M       TS    +++  Y   N +  A+ TF  MEK    AD  
Sbjct: 155 KARRFDLAWAVVRRMLRRGVL-TSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQT 213

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR-GETDEAYRVFRR 365
           ++ +L+ A CK    ++   +L  +  K     +   NIIL+G      +  EA R++R 
Sbjct: 214 VFYSLLRALCKNKNIEDAEELLL-VRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWRE 272

Query: 366 MIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M   C   D  +YT+M+  F + G L    +V+  MK + + PS+  ++ LI  L  +  
Sbjct: 273 MSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENC 332

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           + D   +   +I++G++P+ +T+  +   L +  + D  + + E M L
Sbjct: 333 MKDVQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMML 380


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 193/404 (47%), Gaps = 25/404 (6%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121
           +PE   ++L K +N   L   F  WA   Q +  ++R     +  L K + Y+    L  
Sbjct: 47  TPEAASNLLLKSQNDQALILKFLNWANPHQFF--TLRCKCITLHILTKFKLYKTAQILAE 104

Query: 122 AMRTKRM--------------------LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
            +  K +                         F ++++ Y+R+  +++A+   ++ Q +G
Sbjct: 105 DVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHG 164

Query: 162 VTQNLAAFNGLLSALCKSK-NVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
               + ++N +L A  +SK N+  A+ +F + ++ +  P+  TY+IL+ G+    N+  A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +F +M   GC P++VTY  ++D  CK  ++D+   +++SM      P    Y+V+++ 
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
              E R+++      EM + G   D   YN LI  +CK   F     +  +M   G+ P+
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T   +++ +   G  + A     +M ++    +  TYT ++  F Q G + +A++V +
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            M    F PS+ T++ LING C  G + D+  +LEDM EKG+ P
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP 448



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 182/367 (49%), Gaps = 3/367 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ +I          +   L + M TK  L NV T+  ++  Y +++K+++     
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G+  NL ++N +++ LC+   +++   +   M  R +  D  TY+ L++G+ K+
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE 323

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N  +A  +  EM+  G  P ++TY  ++  +CKAG ++ A+  +  M      P    Y
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + LV  +  +  + +A     EM  NG    V  YNALI   C   K ++   VL+DM  
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG++P+  + + +L+G     + DEA RV R M+ K  + D  TY+ +I+ FC+    ++
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M      P   T++ LIN  C +G +  +  L  +M+EKG+ P   T+  L  
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN 563

Query: 453 LLIKEGR 459
            L K+ R
Sbjct: 564 GLNKQSR 570



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 186/392 (47%), Gaps = 30/392 (7%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y S+I S+ K        + ++ MR + +  N  T+  ++  +++   + EA    
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M   G + ++  +N L++  C +  +  A  + + MK++ + PD  +YS +L G+ + 
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            ++  A  + REMV+ G  PD +TY  ++   C+  R  EA  + + M      P  F Y
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y +E  +E A+    EM + G+L DV  Y+ LI    K ++ +   R+L  +  
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583

Query: 334 KGVAPNSRT--------CNI-------ILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
           +   P+  T         NI       ++ G   +G   EA +VF  M+ K  + D   Y
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAY 643

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV--LINGLCDKGIVSDSCVLLEDM 435
            +MI   C+ G++ KA+ ++K M    F+  +HT +V  L+  L  +G V++    L  +
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSGFL--LHTVTVIALVKALHKEGKVNE----LNSV 697

Query: 436 IEKGIRPSGETFGKLRKLLI----KEGREDVL 463
           I   +R    +  +  K+L+    +EG  DV+
Sbjct: 698 IVHVLRSCELSEAEQAKVLVEINHREGNMDVV 729



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 6/274 (2%)

Query: 201 KTYSILLEG-WGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGI 257
           KT  IL E    K  +   A  +F+ + +T   C      + ++V    +   +D+AL I
Sbjct: 97  KTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSI 156

Query: 258 VKSMDSTVCRPTSFIY-SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           V    +    P    Y +VL  T   +  I  A + F EM ++ +  +V  YN LI  FC
Sbjct: 157 VHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFC 216

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
            A        +   M +KG  PN  T N +++G     + D+ +++ R M +K  E +  
Sbjct: 217 FAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLI 276

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +Y ++I   C+ G +++   V   M  + +     T++ LI G C +G    + V+  +M
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           +  G+ PS  T+  L   + K G  +  ++FL +
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 243 DVLCKAGRVDEALGIVKSMDST--VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           DV  K    + A  + KS+  T  +C  TS ++ ++V +Y   + I+ A+      + +G
Sbjct: 105 DVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHG 164

Query: 301 ILADVAMYNALIGAFCKANK-FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
            +  V  YNA++ A  ++ +       V K+M    V+PN                    
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPN-------------------- 204

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
             VF            TY ++I+ FC  G ++ A  ++  M+ K  +P++ T++ LI+G 
Sbjct: 205 --VF------------TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           C    + D   LL  M  KG+ P+  ++  +   L +EGR   + F+  +MN
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 44/377 (11%)

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK----------- 193
           +++++A+   + M+ +G   N+  +N L+  LCK+    +AQE+F+ MK           
Sbjct: 93  KRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTY 152

Query: 194 --------------------------------DRFIPDSKTYSILLEGWGKDPNLPRARE 221
                                           DR  P+  TYS+L++G  K   + +A E
Sbjct: 153 NTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVE 212

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +   M   GC+PD++TY I+VD LCK  +V  A  +++ M    C P    Y+ L+H   
Sbjct: 213 LLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 272

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              R+ DA+    +M   G   +V  Y  LI   CK  + K+   +L DM  KG  P+  
Sbjct: 273 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 332

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
             N+++NGL    + DE+  + RR +    + D  TY+ +I   C+   L++A ++  Y+
Sbjct: 333 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 392

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           K +   P +  +S LI+GLC  G V ++  L E M   G      T+  L   L K GR 
Sbjct: 393 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452

Query: 461 DVLKFLQEKMNLLVKEP 477
           D    L  +M  +   P
Sbjct: 453 DEAHLLLARMVRMGTPP 469



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 9/341 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++R + R  ++++A   F+ M+   +  N+   + L+  LCK+K    A   F
Sbjct: 8   DVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCF 67

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+    + D+  Y+ LL G  K+  L +A  I  EM D GC P++VTY  ++D LCK 
Sbjct: 68  RAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKN 127

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM-------EKNGI 301
              D A  + + M S  C P+   Y+ L+       ++E A+  F EM         +  
Sbjct: 128 NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRC 187

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             +V  Y+ LI   CKAN+      +L+ M ++G +P+  T  I+++GL    +   A+ 
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 247

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           V R M+   C  +  TY  ++   C+   +  A  + + M  +   P++ T+  LI+GLC
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 307

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             G V D+C +L DMI+KG  P    +  L   L K  + D
Sbjct: 308 KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVD 348



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 204/432 (47%), Gaps = 19/432 (4%)

Query: 59  IRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVR------AYHSMIESLA 108
           +  SP +V    +L+     G L  A   F+    +++++   R       Y  +I+ L 
Sbjct: 143 VECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLC 202

Query: 109 KIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           K  +     +L+ +M+ +    +V T+ I++    +  KV  A      M   G   NL 
Sbjct: 203 KANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLV 262

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +N LL  LC+++ V  A  +   M  R   P+  TY  L++G  K   +  A  +  +M
Sbjct: 263 TYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADM 322

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +D G  PD++ Y ++++ LCKA +VDE++ +++   S   +P    YS +++     NR+
Sbjct: 323 IDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 382

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A    L ++  G   DV +Y+ LI   CKA K    + + + M   G   +  T + +
Sbjct: 383 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTL 442

Query: 347 LNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++GL   G  DEA+ +  RM+++    +  TY  +IK  C    L++A ++ + M+    
Sbjct: 443 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 502

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE-----TFGKLRKLLIKEGR- 459
            PS  T+++LI+G+C    V  + VLLE    + +   G       +  L   L K GR 
Sbjct: 503 APSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRV 562

Query: 460 EDVLKFLQEKMN 471
            + L + QE ++
Sbjct: 563 AEALDYFQEMID 574



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 177/377 (46%), Gaps = 10/377 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +     V  Y  +++ L K  +    W+++  M     + N+ T+  ++    R ++V
Sbjct: 218 KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRV 277

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSIL 206
            +A+     M   G T N+  +  L+  LCK   V+ A  +   M D+   PD   Y++L
Sbjct: 278 SDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 337

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  K   +  +  + R  V  G  PD+VTY  ++  LC++ R+DEA  ++  + S  C
Sbjct: 338 INGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 397

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   +YS L+       ++++A D +  M  +G  ADV  Y+ LI   CKA +    + 
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHL 457

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +L  M   G  P++ T N ++ GL      DEA  +   M +  C   A TY ++I   C
Sbjct: 458 LLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 517

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHT------FSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +   ++ A  + +  K  R + +  T      +S LI+GLC  G V+++    ++MI+ G
Sbjct: 518 RMERVDSAVVLLEQAK-ARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNG 576

Query: 440 IRPSGETFGKLRKLLIK 456
           + P   T+  L + L K
Sbjct: 577 VIPDHITYSILLEGLKK 593



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 141/280 (50%), Gaps = 9/280 (3%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY+ LL G+ +   + +A+  F EM      P++    I++D LCKA R  +AL  
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            ++M  +     + IY+ L+     E R++ A+    EM  +G   +V  YN+LI   CK
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--------KL 369
            N+      + + M S   +P+  T N +L+GL   G+ + A  +F+ M+          
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
           C  +  TY+++I   C+   + +A ++ + MK +   P + T+++L++GLC +  V+ + 
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +L +M++ G  P+  T+  L   L +  R  D L  +++
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 286



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 113/237 (47%), Gaps = 8/237 (3%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C PD+ TY  ++   C+ G +D+A      M S    P  F+ S+L+       R  DA+
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F  M+ +GI+AD  +Y AL+    K  +      +L +M   G  PN  T N +++GL
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK------ 403
               E D A  +F  M  + C     TY  ++    + G+LE+A  +++ M  +      
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 404 -RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            R  P++ T+SVLI+GLC    VS +  LLE M  +G  P   T+  L   L KE +
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 241



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 129/315 (40%), Gaps = 83/315 (26%)

Query: 96  SVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +V  Y ++I+ L K+ + +    ++ D+++   T  ++    + +++    +  +V+E++
Sbjct: 295 NVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM---IYNMLINGLCKADQVDESI 351

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW 210
                    G+  ++  ++ ++  LC+S  + +A  +   +K R  P D   YS L++G 
Sbjct: 352 ALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGL 411

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA---------------- 254
            K   +  A +++  M   GC+ D+VTY  ++D LCKAGRVDEA                
Sbjct: 412 CKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPST 471

Query: 255 -------------------LGIVKSMDSTVCRPTSFIYSVLVH----------------- 278
                              + +V+ M+ + C P++  Y++L+H                 
Sbjct: 472 MTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQ 531

Query: 279 ----------------TYGV-------ENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
                            Y           R+ +A+D F EM  NG++ D   Y+ L+   
Sbjct: 532 AKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGL 591

Query: 316 CKANKFKNVYRVLKD 330
            K+     +  ++ D
Sbjct: 592 KKSKDLHELRHLVLD 606



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 2/170 (1%)

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           DV  Y AL+  FC+  +     R   +M SK + PN   C+I+++GL     + +A R F
Sbjct: 8   DVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCF 67

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           R M      AD   YT ++    +   L++A  +   M+     P++ T++ LI+GLC  
Sbjct: 68  RAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKN 127

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
                +  L E M      PS  T+  L   L + G+ E  +   QE ++
Sbjct: 128 NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLD 177



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 366 MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           M+ +C+ D  TY  +++ FC+GGE+++A + +  M+ K  +P++   S+LI+GLC     
Sbjct: 1   MLPICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRS 60

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
            D+      M   GI      +  L   L KE R D  L  L E
Sbjct: 61  IDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHE 104


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 181/377 (48%), Gaps = 8/377 (2%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           R + S++   ++     +M  L   M           T+  ++R   R   +  A    +
Sbjct: 94  RPFRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLS 153

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
           +M + G   +   FN L+   C+++ +  A ++F  M  R F  D+ +Y+ L+EG+ +  
Sbjct: 154 LMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAG 213

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+FREM      PD+ T+  +V  LC AGR +E L +++ M     RPT+  Y+
Sbjct: 214 RIDEALELFREMT----QPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYA 269

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV  +  E + E+A     EM  +G++  V     ++ A+C+  +     RV + M  K
Sbjct: 270 ALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFK 329

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G  PN  T N I+ G    G+  +A  +  +M +   E D  TY ++I+  C  G +  A
Sbjct: 330 GCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSA 389

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           F++ + M+        +T++VLI+ LC  G V ++C L + +  +GIRP+  TF  +   
Sbjct: 390 FRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVING 449

Query: 454 LIKEGREDVLKFLQEKM 470
           L K G+ DV     E M
Sbjct: 450 LCKAGKFDVACTFLENM 466



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 167/363 (46%), Gaps = 5/363 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKV 147
           K+  +  + RAY ++++   + ++ +    ++N M    ++     C I++  Y R  ++
Sbjct: 257 KELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRM 316

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
             AV  F  M+  G   N+  +N ++   C +  V KA  + D M++  + PD  TY++L
Sbjct: 317 SGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G   D ++  A  + R M   G   D  TY +++D LCK G+VDEA  +   ++    
Sbjct: 377 IRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLE-MEKNGILADVAMYNALIGAFCKANKFKNVY 325
           RP S  ++ +++      +  D   TFLE M   G   D   Y+  I   CK    +   
Sbjct: 437 RPNSVTFNTVINGLCKAGKF-DVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGL 495

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
             + +M  K V P++    I++N L        A R++ +M+ + C  D  TYT  ++ +
Sbjct: 496 FFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAY 555

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C  G L++A  V   MK  R I     ++ LI+G    G    +  +L+ M      P+ 
Sbjct: 556 CNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNH 615

Query: 445 ETF 447
            TF
Sbjct: 616 FTF 618



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 179/392 (45%), Gaps = 43/392 (10%)

Query: 93  YEHSVRA-----YHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144
           Y H+  A     Y+++I +L   A +R  Q    L+  +R+    +  TF  ++  Y R 
Sbjct: 120 YRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLM--VRSGWRPDAFTFNSLILGYCRT 177

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-------------- 190
           Q++E A   F  M   G +Q+  ++  L+   C++  + +A E+F               
Sbjct: 178 QQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALV 237

Query: 191 -------------CMKDR-----FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
                        CM  +     + P ++ Y+ L++ W ++     A +I  EM D+G  
Sbjct: 238 KGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLM 297

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P +VT  I+V+  C+ GR+  A+ + +SM    C P  + Y+ +V  +    ++  A+  
Sbjct: 298 PCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMAL 357

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             +M + G+  DV  YN LI   C      + +R+L+ M   G+A +  T N++++ L  
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCK 417

Query: 353 RGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+ DEA  +F  +  +    ++ T+  +I   C+ G+ + A    + M    + P  +T
Sbjct: 418 TGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYT 477

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +S  I  LC      +    +++M++K ++PS
Sbjct: 478 YSPFIENLCKTKGSQEGLFFIDEMLQKDVKPS 509



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 139/350 (39%), Gaps = 18/350 (5%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++    +  KV+EA   F+ ++  G+  N   FN +++ LCK+     A    + M
Sbjct: 407 TYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENM 466

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
               + PD+ TYS  +E   K            EM+     P  V Y I+++ L      
Sbjct: 467 ISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNY 526

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  I   M S  C P    Y+  V  Y  E R+++A +   EM+K   + D   YN L
Sbjct: 527 GLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTL 586

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL----------------NGLIGRGE 355
           I       +      +LK M      PN  T  I+L                  +    E
Sbjct: 587 IDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIE 646

Query: 356 TDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             + + +F  M K    + A TY  +++ F +   L++   +   MK +    +   ++ 
Sbjct: 647 LADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNA 706

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           L+N  C   + SD+  LL  MI  G  P+   +  L   L  EG+ D  K
Sbjct: 707 LVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAK 756



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 149/387 (38%), Gaps = 20/387 (5%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTL-AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
            L+  GIR +      V+     AG     C F        Y      Y   IE+L K +
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTK 489

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
             Q     ++ M  K +  +   + I++ +    +    A   +  M   G + ++  + 
Sbjct: 490 GSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYT 549

Query: 171 GLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
             + A C    + +A+ +   MK  R I D+  Y+ L++G        RA  I + M   
Sbjct: 550 TSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGV 609

Query: 230 GCNPDIVTYGIMV----------DVLCKAGRV------DEALGIVKSMDSTVCRPTSFIY 273
              P+  T+ I++           V  KA  V       +   + + M       ++  Y
Sbjct: 610 ASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTY 669

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             ++  +  E R+++       M++  +  +  +YNAL+  FCK   + + + +L  M  
Sbjct: 670 LSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIG 729

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
            G  PN      +L+GL   G+ D A  +FR    K    D   + ++I  F + G  + 
Sbjct: 730 HGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADM 789

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGL 419
              +   ++  +  PS  T+++L   L
Sbjct: 790 CHDMISMLEQMKCKPSDETYAMLTEEL 816


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 202/420 (48%), Gaps = 38/420 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S++ Y +++ +L K R  +++  L+  M    +  NV TF I +R   R  K++EA   F
Sbjct: 226 SLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M   G   +L  +  L+ ALC +  +  A+E+F  MK +   PD   Y  LL+ +   
Sbjct: 286 RRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDF 345

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------------------------- 247
            +L   +E + +M   G  PD+VT+ I+VDVLCK                          
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405

Query: 248 ---------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
                    AGR+++AL ++ +M+S   +PT++ Y++ +  +G       AV+TF +M+ 
Sbjct: 406 NTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKA 465

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI+ ++   NA + +  +  + +    +   +   G+AP+S T N+++      G+ DE
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDE 525

Query: 359 AYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  +   MI+  CE D      +I    + G +++A++++  MK  +  P++ T++ L++
Sbjct: 526 AVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLS 585

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           GL  +G V  +  L E MIEK   P+  +F  L     K    ++   +  KM ++  +P
Sbjct: 586 GLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKP 645



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 211/476 (44%), Gaps = 46/476 (9%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           K   ++ L +P+ V+     ++ IRVS + V  VL+   +    A  +F    +     H
Sbjct: 63  KDFCRLALQNPEQVM-VVKGKTEIRVSEDEVLGVLKSMTDP-IRALSYFYSISEFPTVLH 120

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +    + M+E L    + + M  +   M+ K +  +++T+  I +  +    + +     
Sbjct: 121 TTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVL 180

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           N M+K G   N  ++NGL+  L +S    +A E++  M  +   P  KTYS L+   GK 
Sbjct: 181 NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKK 240

Query: 214 -------------------PN----------------LPRAREIFREMVDTGCNPDIVTY 238
                              PN                +  A EIFR M D GC PD+VTY
Sbjct: 241 RDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTY 300

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            +++D LC AG+++ A  +   M +   +P   IY  L+  +     ++   + + +ME 
Sbjct: 301 TVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
           +G + DV  +  L+   CKA  F   +     M  +G+ PN  T N ++ GL+  G  ++
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIED 420

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A ++   M  +  +  A TY + I  F + GE  KA + ++ MK K  +P++   +  + 
Sbjct: 421 ALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            L + G + ++  +   + E G+ P   T+  + K   K G+ D      E +NLL
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD------EAVNLL 530



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 190/403 (47%), Gaps = 5/403 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           V+  I+ DVL K R+    AF  F    ++Q    ++  Y+++I  L +  + +    L+
Sbjct: 368 VTFTILVDVLCKARDFDE-AFATFD-VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 121 NAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
             M +  +     T+ I +  + +  +  +AV TF  M+  G+  N+ A N  L +L + 
Sbjct: 426 GTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEM 485

Query: 180 KNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             +R+A+ +F+ +++    PDS TY+++++ + K   +  A  +  EM+  GC PD++  
Sbjct: 486 GRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVV 545

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++D L KAGRVDEA  +   M      PT   Y+ L+   G E R++ A++ F  M +
Sbjct: 546 NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIE 605

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
                +   +N L+  FCK ++ +   ++   M      P+  T N ++ GLI   + + 
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK-YMKLKRFIPSMHTFSVLIN 417
           A+  F ++ K    D  T   ++    + G++  A  + + +M   RF  +   +  L+ 
Sbjct: 666 AFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMG 725

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           G   +  +  + +  E+++  GI         L ++L K  RE
Sbjct: 726 GTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRE 768



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 150/309 (48%), Gaps = 3/309 (0%)

Query: 172  LLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+  LCK K    A +IFD    +    P   +Y+ L+    +     +A ++F++M + 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 230  GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
            GC PD  T+ +++ V  K+G++ E   + K M S  C+P +  Y++++ +    N ++ A
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 290  VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +D F ++  +        Y  LI    K  + +   R+ ++M+  G  PN    NI++NG
Sbjct: 878  LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 350  LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                G+T+ A ++F+RM+ +    D  +YT+++   C  G +++A   +  +K     P 
Sbjct: 938  YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 409  MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
               ++ +INGL     + ++  L  +M  +GI P   T+  L   L   G  +  K + E
Sbjct: 998  FIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYE 1057

Query: 469  KMNLLVKEP 477
            ++ L   EP
Sbjct: 1058 ELQLAGLEP 1066



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 162/341 (47%), Gaps = 3/341 (0%)

Query: 80   AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
            A+  F    K+     ++ +Y+ +I  L ++   +  WDL   M+      +  TF +++
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 139  RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFI 197
              + +  K+ E    +  M       +   +N ++S+L KS N+ KA + F D +   F 
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 198  PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
            P  +TY  L++G  K   L  A  +F EM D GC P+   + I+++   K G  + A  +
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 258  VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
             K M +   RP    Y++LV    +  R+++A+  F E++  G+  D   YN +I    K
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010

Query: 318  ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADT 376
            + + +    +  +M ++G+ P+  T N ++  L   G  ++A R++  + +   E D  T
Sbjct: 1011 SQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFT 1070

Query: 377  YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            Y  +I+ +      E A+ V+K M +    P++ T++ L N
Sbjct: 1071 YNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 147/309 (47%), Gaps = 2/309 (0%)

Query: 144  VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKT 202
            V   E+A   F  M+  G   +   FN LL+   KS  + +  E++ + +  R  PD+ T
Sbjct: 801  VHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860

Query: 203  YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            Y+I++    K  NL +A + F ++V +   P   TYG ++D L K GR++EA+ + + M 
Sbjct: 861  YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920

Query: 263  STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               C+P   I+++L++ YG     E A   F  M   GI  D+  Y  L+   C A +  
Sbjct: 921  DYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD 980

Query: 323  NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
                   ++ S G+ P+    N I+NGL      +EA  ++  M  +    D  TY  ++
Sbjct: 981  EALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040

Query: 382  KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
                  G +E+A ++++ ++L    P + T++ LI G         +  + ++M+  G  
Sbjct: 1041 LNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCN 1100

Query: 442  PSGETFGKL 450
            P+  T+ +L
Sbjct: 1101 PNIGTYAQL 1109



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 183/386 (47%), Gaps = 17/386 (4%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  V   +S+I+SL K  +    W + + M+  ++   V T+  ++    +  +V++A+ 
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKDRFIPDSKTYSIL 206
            F  M +   + N  +FN LL   CK+  V  A ++F      DC      PD  TY+ +
Sbjct: 599 LFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK-----PDVLTYNTV 653

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTV 265
           + G  K+  +  A   F ++  +  +PD VT   ++  L K G++ +A+ I +  M    
Sbjct: 654 IYGLIKENKVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R     +  L+    VE  ++ A+    E+  NGI  + +    L+   CK  +    Y
Sbjct: 713 FRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAY 772

Query: 326 RVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           ++      K G++P   + N ++  L+    T++A+ +F+ M  + C  DA T+ M++ +
Sbjct: 773 QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             + G++ + F+++K M  +R  P   T++++I+ L     +  +     D++    RP+
Sbjct: 833 HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQE 468
             T+G L   L K GR E+ ++  +E
Sbjct: 893 PRTYGPLIDGLAKVGRLEEAMRLFEE 918



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 24/291 (8%)

Query: 1    MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALD----- 55
            M+   H ++  I+      +   S     +A+     IS +  S+    LD ALD     
Sbjct: 828  MLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN---LDKALDFFYDL 884

Query: 56   -QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY--EHSVRAYHSMIESLAKIRQ 112
              S  R +P     +++     G L     +  E+  +Y  + +   ++ +I    KI  
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAM-RLFEEMSDYGCKPNCAIFNILINGYGKIGD 943

Query: 113  YQIMWDLVNAMRTKRMLN------VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
             +    L      KRM+N      ++++ I++       +V+EA+Y FN ++  G+  + 
Sbjct: 944  TETACQLF-----KRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 167  AAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             A+N +++ L KS+ + +A  +++ M++R  +PD  TY+ L+   G    + +A+ ++ E
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 226  MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +   G  PD+ TY  ++     +   + A  + K+M    C P    Y+ L
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAF 394
           V   + TCN +L  L    + ++   VF  M K +   D DTY  + K     G L +  
Sbjct: 118 VLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMT 177

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            V   M+   F+ + ++++ LI+ L   G   ++  +   M+ +G++PS +T+  L   L
Sbjct: 178 TVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVAL 237

Query: 455 IKEGREDVLKFLQEKMNLLVKEP 477
            K+   +++  L ++M  L   P
Sbjct: 238 GKKRDSEMVMVLLKEMEDLGLRP 260


>gi|297820986|ref|XP_002878376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324214|gb|EFH54635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 498

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 189/395 (47%), Gaps = 22/395 (5%)

Query: 61  VSPEIVEDVLEKFRNA---GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           +SPE V +VL     A   G  A  FFK++ K  N   +  ++   +  LA++R +   W
Sbjct: 64  LSPEFVSEVLGSLFAAHSNGLKALEFFKYSLKSSNSSPTSDSFEKTLHILARMRYFDQAW 123

Query: 118 DLVNAMRT--KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK------YGVTQNLAAF 169
            L+  +R     +L+ ++  II+ K A+    EE +  F  M+K      +GV +    F
Sbjct: 124 ALMAEIRKDYPDLLSFKSMSIILCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDE----F 179

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL A C  + +++A+ IF+ +  RF PD KT +ILL G+ +  ++      + EMV  
Sbjct: 180 NILLRAFCTEREMKEARSIFEKLHSRFKPDVKTMNILLLGFKEAGDITATELFYHEMVKR 239

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  P+ VTYGI +D  CK     EAL + + MD      T  I + L+H  GV      A
Sbjct: 240 GFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRQDIYITVQILTTLIHGSGVVRNKIKA 299

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F E+ K G+  D   YNAL+ +  K     +  +V+K+M  K + P+S T + +  G
Sbjct: 300 RQLFDEIPKRGLTPDCGAYNALMSSLMKCGDVSDAIKVMKEMEEKEIEPDSVTFHSMFIG 359

Query: 350 LIGRGETD-----EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++   E       E Y+  +   +       T  M++K+FCQ GE+     +WKYM  K 
Sbjct: 360 MMKSKEFGFSGVCEYYQKMKE--RSLVPKTPTVVMLMKLFCQNGEVNLGLDLWKYMLEKG 417

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           + P  H   +L   LC +   +D+       +E+G
Sbjct: 418 YCPHGHALELLTTALCARRRANDAFECSRQTVERG 452


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 169/334 (50%), Gaps = 8/334 (2%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDS 200
           A+ ++    V   N M  +GVT N+ + N L++ LC+  +V  A  +   M K    PD+
Sbjct: 103 AKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDA 162

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            T++ L+ G   +  +  A  +F EMV  G  PD+++Y  +++ LCK+G    AL +++ 
Sbjct: 163 ITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRK 222

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M+   C+P    Y+ ++ +   +  + DA+D   EM   GI  DV  Y+ ++  FC    
Sbjct: 223 MEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH 282

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
                 +  +M  + V PN+ T  I+++GL   G   EA  VF  M K   E +A TY  
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           ++  +C   ++++A KV   M  K   P +H++++LING C +  + ++  LL +M EK 
Sbjct: 343 LMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE 402

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           + P   T+  L + L + GR       QE +NL 
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRP------QEALNLF 430



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 179/386 (46%), Gaps = 7/386 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           + N   SV  +   + S+AK +QY  +  L N M    +  NV +  I++    R+  V 
Sbjct: 85  RMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVV 144

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+     M K G+  +   FN L++  C    +++A  +F+ M  R   PD  +YS ++
Sbjct: 145 FAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVI 204

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K  N   A ++ R+M + GC P++V Y  ++D LCK   V++A+ ++  M      
Sbjct: 205 NGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIP 264

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS ++H +     + +A   F EM    ++ +   +  L+   CK         V
Sbjct: 265 PDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCV 324

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + M  KG  PN+ T N +++G     + DEA +V   M+ K C     +Y ++I  +C+
Sbjct: 325 FEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCK 384

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              L++A  +   M  K   P   T+S L+ GLC  G   ++  L ++M   G+ P   T
Sbjct: 385 RRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMT 444

Query: 447 FGKLRKLLIKEGRED----VLKFLQE 468
           +  L   L K G  D    +LK +QE
Sbjct: 445 YSTLLDGLCKHGHLDEALKLLKSMQE 470



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 171/349 (48%), Gaps = 9/349 (2%)

Query: 119 LVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           L N M R     +V ++  ++    +      A+     M++ G   NL A+  ++ +LC
Sbjct: 184 LFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLC 243

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K   V  A ++   M DR IP D  TYS +L G+    +L  A  +F EMV     P+ V
Sbjct: 244 KDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTV 303

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           T+ I+VD LCK G V EA  + ++M      P ++ Y+ L+  Y + N++++A      M
Sbjct: 304 TFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIM 363

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              G    V  YN LI  +CK  +      +L +M+ K + P++ T + ++ GL   G  
Sbjct: 364 VDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRP 423

Query: 357 DEAYRVFRRMIKLCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
            EA  +F+ M   C +    D  TY+ ++   C+ G L++A K+ K M+  +  P +  +
Sbjct: 424 QEALNLFKEM---CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLY 480

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           ++LI G+   G +  +  L   +   GI+P+  T+  + K L+KEG  D
Sbjct: 481 NILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSD 529



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 186/368 (50%), Gaps = 6/368 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY ++I+SL K        DL++ M  + +  +V T+  I+  +  +  + EA   FN M
Sbjct: 234 AYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEM 293

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
               V  N   F  L+  LCK   V +A+ +F+ M  +   P++ TY+ L++G+  +  +
Sbjct: 294 VGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQM 353

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+++   MVD GC P + +Y I+++  CK  R+DEA  ++  M      P +  YS L
Sbjct: 354 DEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTL 413

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +       R ++A++ F EM  +G+L D+  Y+ L+   CK        ++LK M    +
Sbjct: 414 MQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+    NI++ G+   G+ + A  +F ++     +    TYT+MIK   + G  ++A++
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +++ M+   F+P+  +++V+I G       S +  L+++M+ K       TF  L  L  
Sbjct: 534 LFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDL-- 591

Query: 456 KEGREDVL 463
            E R++++
Sbjct: 592 -ESRDEII 598



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 1/256 (0%)

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M+     P +V +G  +  + K  +    + +   MD        +  ++L++    
Sbjct: 80  FYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCR 139

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
            N +  A+    +M K GI  D   +N LI   C   + K    +  +M  +G  P+  +
Sbjct: 140 LNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVIS 199

Query: 343 CNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            + ++NGL   G T  A ++ R+M  K C+ +   YT +I   C+   +  A  +   M 
Sbjct: 200 YSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMV 259

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +   P + T+S +++G C  G ++++ +L  +M+ + + P+  TF  L   L KEG   
Sbjct: 260 DRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVS 319

Query: 462 VLKFLQEKMNLLVKEP 477
             + + E M     EP
Sbjct: 320 EARCVFEAMTKKGAEP 335



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 1/201 (0%)

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           +D+AL     M     RP+   +   + +   + +    V    +M+  G+  +V   N 
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           LI   C+ N       VL  M   G+ P++ T N ++NG    GE  EA  +F  M++  
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 371 -EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            + D  +Y+ +I   C+ G    A ++ + M+ K   P++  ++ +I+ LC   +V+D+ 
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 430 VLLEDMIEKGIRPSGETFGKL 450
            LL +M+++GI P   T+  +
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTI 273


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 205/429 (47%), Gaps = 11/429 (2%)

Query: 32  LDAAKSISKIMLS-----SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFF 84
           L  A+S+ + ++S     S   V  + L+  G   S  +   ++  + ++G    A   F
Sbjct: 119 LSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCF 178

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYAR 143
           +   K  N +    +   + + L K+      W      +      +V  F ++M +  +
Sbjct: 179 RLVRKH-NLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCK 237

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
             K+ EA   F  + K G+   + +FN L++  CKS N+ +   +    M++R  PD  T
Sbjct: 238 EHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFT 297

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           YS+L+ G  K+  L  A ++F EM D G  P+ VT+  +++  C  GR D  + I + M 
Sbjct: 298 YSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML 357

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               +P    Y+ L++       + +A    +EM + G+  D   Y  LI   CK    +
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
           +   + K+M  +G+  ++     +++G    G+  EA R  R M++   + D  TYTM+I
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             FC+ G+++  FK+ K M+    +P + T++VL+NGLC +G + ++ +LL+ M+  G+ 
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537

Query: 442 PSGETFGKL 450
           P   T+  L
Sbjct: 538 PDDITYNIL 546



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 219/496 (44%), Gaps = 64/496 (12%)

Query: 25  SEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA--- 80
           + P++   D    +IS+ +  SP   L ++L +    ++P  + D++    N  +L+   
Sbjct: 28  TPPTSHCHDPILTTISEAIKVSPTKPLHSSLKRILPSLTPNHLIDLIN--LNPHSLSPPS 85

Query: 81  -FCFFKWAEKQQNYEHSVRAY---------HSMIESLAKIRQYQI----------MWDLV 120
              FFKW   Q ++  S+ +Y         H M+     + Q+ +          ++  V
Sbjct: 86  LLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSV 145

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-------------------- 160
              R     N+  F ++M  Y       +A+  F +++K+                    
Sbjct: 146 LEARGTHQSNL-VFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLN 204

Query: 161 ---------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
                          G   ++  FN L+  LCK   + +AQ +F  +  R + P   +++
Sbjct: 205 LTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFN 264

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+ G+ K  NL +   + R M++    PD+ TY ++++ LCK G++D+A  +   M   
Sbjct: 265 TLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDR 324

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    ++ L++ + V  R +  ++ + +M + G+  DV  YN LI   CK    +  
Sbjct: 325 GLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREA 384

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
            +++ +M  +G+ P+  T  ++++G    G+ + A  + + M+K   E D   +T +I  
Sbjct: 385 KKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISG 444

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC+ G++ +A +  + M      P   T++++I+G C KG V     LL++M   G  P 
Sbjct: 445 FCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPG 504

Query: 444 GETFGKLRKLLIKEGR 459
             T+  L   L K+G+
Sbjct: 505 VVTYNVLLNGLCKQGQ 520



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F  ++  + R  +V EA  T   M + G+  + A +  ++   CK  +V+   ++   M+
Sbjct: 438 FTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQ 497

Query: 194 -DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
            D  +P   TY++LL G  K   +  A  +   M++ G  PD +TY I+++
Sbjct: 498 CDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 178/349 (51%), Gaps = 6/349 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++  Y +  ++  A+    ++ +  V+ ++  +N +L  LC S  +++A E+ 
Sbjct: 179 DVITYNVLISGYCKTGEIGSAL---QLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVL 235

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D  M+    PD  TY+IL+E   K+  + +A ++  EM D GC PD+VTY ++++ +CK 
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKE 295

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA+  +  M S  C+P    +++++ +     R  DA     EM + G    V  +
Sbjct: 296 GRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTF 355

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI   C+         VL+ M   G  PNS + N +L+ L    + + A      M+ 
Sbjct: 356 NILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVS 415

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  D  TY  ++   C+ G+++ A ++   +  K   P + T++ +I+GL   G   D
Sbjct: 416 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDD 475

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMNLLVK 475
           +  LL++M  KG++P   T+  L   L +EG+ D  + F  +   + VK
Sbjct: 476 AIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVK 524



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 5/327 (1%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-F 196
           +R+  R  ++EE       M   G   ++ A   L+  LCK+    KA  + + ++D   
Sbjct: 117 LRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGA 176

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +PD  TY++L+ G+ K   +  A ++   M     +PD+VTY  ++  LC +G++ EA+ 
Sbjct: 177 VPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAME 233

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++       C P    Y++L+     E+ +  A+    EM   G   DV  YN LI   C
Sbjct: 234 VLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K  +     R L  M S G  PN  T NIIL  +   G   +A +    MI K C     
Sbjct: 294 KEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV 353

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+ ++I   C+ G + +A  V + M      P+  +++ L++ LC    +  +   L+ M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDV 462
           + +G  P   T+  L   L K+G+ DV
Sbjct: 414 VSRGCYPDIVTYNTLLTALCKDGKVDV 440



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 187/410 (45%), Gaps = 40/410 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V  Y+ +I    K  +      L++ M      +V T+  I+R      K++EA+   + 
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRMSVSP--DVVTYNTILRTLCDSGKLKEAMEVLDR 237

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG------ 209
             +     ++  +  L+ A CK   V +A ++ D M+D+   PD  TY++L+ G      
Sbjct: 238 QMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGR 297

Query: 210 -------------WGKDPNLPRAREIFR----------------EMVDTGCNPDIVTYGI 240
                        +G  PN+     I R                EM+  GC+P +VT+ I
Sbjct: 298 LDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNI 357

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ LC+ G +  A+ +++ M    C P S  Y+ L+H    + ++E A++    M   G
Sbjct: 358 LINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              D+  YN L+ A CK  K      +L  + SKG +P   T N +++GL   G+TD+A 
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 361 RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++   M  K  + D  TY+ ++    + G++++A   +  ++     P+  T++ ++ GL
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGL 537

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
           C       +   L  M+ +G +P+  ++  L + L  EG  ++ L+ L E
Sbjct: 538 CKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNE 587



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 21/301 (6%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  II+R      +  +A      M + G + ++  FN L++ LC+   + +A ++ 
Sbjct: 316 NVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVL 375

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M      P+S +Y+ LL    KD  + RA E    MV  GC PDIVTY  ++  LCK 
Sbjct: 376 EKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKD 435

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+VD A+ I+  + S  C P    Y+ ++       + +DA+    EM+  G+  D+  Y
Sbjct: 436 GKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITY 495

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + L+G   +  K         D+   GV PN+ T N I+ GL    +T  A      M+ 
Sbjct: 496 STLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVA 555

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C+    +Y ++I+     G  ++A +                   L+N LC +G+V  
Sbjct: 556 RGCKPTETSYMILIEGLAYEGLAKEALE-------------------LLNELCSRGVVKK 596

Query: 428 S 428
           S
Sbjct: 597 S 597



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 5/272 (1%)

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           IPD    + L+ G  K     +A  +   + D+G  PD++TY +++   CK G +  AL 
Sbjct: 142 IPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQ 201

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M  +   P    Y+ ++ T     ++++A++      +     DV  Y  LI A C
Sbjct: 202 LLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC 258

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           K +      ++L +M  KG  P+  T N+++NG+   G  DEA R    M    C+ +  
Sbjct: 259 KESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVI 318

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+ ++++  C  G    A K    M  K   PS+ TF++LIN LC KG++  +  +LE M
Sbjct: 319 THNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKM 378

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
            + G  P+  ++  L   L K+ + E  +++L
Sbjct: 379 PQHGCTPNSLSYNPLLHALCKDKKMERAIEYL 410



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +E+      +M   G + D+    +LI   CK  K     RV++ +   G  P+  T N+
Sbjct: 126 LEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNV 185

Query: 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +++G    GE   A ++  RM      D  TY  +++  C  G+L++A +V      +  
Sbjct: 186 LISGYCKTGEIGSALQLLDRMS--VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQREC 243

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLK 464
            P + T+++LI   C +  V  +  LL++M +KG +P   T+  L   + KEGR D  ++
Sbjct: 244 YPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIR 303

Query: 465 FLQE 468
           FL  
Sbjct: 304 FLNH 307



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y+ ++ +L K ++ +   + ++ M ++    ++ T+  ++    +  KV+ AV   N +
Sbjct: 389 SYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 448

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              G +  L  +N ++  L K      A ++ D MK + + PD  TYS L+ G  ++  +
Sbjct: 449 GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKV 508

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F ++ + G  P+ +TY  ++  LCKA +   A+  +  M +  C+PT   Y +L
Sbjct: 509 DEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMIL 568

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGIL 302
           +     E   ++A++   E+   G++
Sbjct: 569 IEGLAYEGLAKEALELLNELCSRGVV 594


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 206/494 (41%), Gaps = 90/494 (18%)

Query: 52  TALDQSGIRVSPEIVEDV---LEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA 108
           T L+ S   +SP I +     + +F  +   AF FF WA +   + H  R+Y  M++ L 
Sbjct: 12  TELESSLFSLSPSISKTTFFQVLRFIASPPKAFEFFNWASRN-GFAHDSRSYFMMLDILG 70

Query: 109 KIRQYQIMWDLVNAM--RTKRMLNVET-FC-IIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           +     I  + + ++  R+   + +E  FC  ++R Y       EA+  F++M+  GV+ 
Sbjct: 71  RNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSP 130

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
           ++  FN LL  L K      A  +FD  C      PD+ T++IL+ G+ K+  +      
Sbjct: 131 SVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRF 190

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV--CRPTSFIYSVLVHTY 280
           F+EM    C PD+VTY  +VD LC+AG+V  A  +VK M   +    P    Y+ LV  Y
Sbjct: 191 FKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGY 250

Query: 281 GVENRIEDAVDTFLEMEKNGI------------------------------------LAD 304
            ++  I++A+  F EM   G+                                    + D
Sbjct: 251 CMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPD 310

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE--------- 355
              YN L+ A C A  F    ++ K M    V P+S T ++++  L  RG+         
Sbjct: 311 TCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFD 370

Query: 356 ---------------------------------TDEAYRVFRRMIKLCEADADTYTMMIK 382
                                            T +A RVFR+++K    D  +Y  +I 
Sbjct: 371 KLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLII 430

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+ G  E  +K+  +M  + ++P   T+ +LING   KG    +   LE M++    P
Sbjct: 431 GHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLP 490

Query: 443 SGETFGKLRKLLIK 456
               F  +   L+K
Sbjct: 491 KTSVFHSILSELLK 504



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 9/256 (3%)

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----LGIVKSMDSTVCRPTSFI 272
           P+A E F      G   D  +Y +M+D+L + G ++ A      I +  + +V     F 
Sbjct: 41  PKAFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFC 100

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM- 331
            + L+ +YG      +A+  F  M+ +G+   V  +N+L+    K  +    + V  +M 
Sbjct: 101 -NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMC 159

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
            + GV P++ T NI++ G       DE +R F+ M +  CE D  TY  ++   C+ G++
Sbjct: 160 GTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKV 219

Query: 391 EKAFKVWKYM--KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
             A  V K M  K+K   P + T++ L+ G C K  + ++ V+ E+M+ +G++P+  T+ 
Sbjct: 220 RIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYN 279

Query: 449 KLRKLLIKEGREDVLK 464
            L K L +  + D +K
Sbjct: 280 TLIKGLCEVQKFDKIK 295



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++R  A   K  E    FN   + G   +  ++  +L  L ++ N+  A+     +
Sbjct: 29  TFFQVLRFIASPPKAFEF---FNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSI 85

Query: 193 KDRFIPDSKTY----SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + R     K      + LL  +G       A ++F  M  +G +P ++T+  ++ +L K 
Sbjct: 86  ERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKR 145

Query: 249 GRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           GR + A  +   M  T    P ++ +++L+  +   + +++    F EM +     DV  
Sbjct: 146 GRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVT 205

Query: 308 YNALIGAFCKANKFKNVYRVLKDM--NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           YN L+   C+A K +  + V+K M    K ++P+  T   ++ G   + E DEA  VF  
Sbjct: 206 YNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEE 265

Query: 366 MIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIPSMHTFSVLINGLCDKG 423
           M+       D TY  +IK  C+  + +K  ++       R F+P   T++ L+N  CD G
Sbjct: 266 MVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAG 325

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
              ++  + + M E  ++P   T+  L + L + G
Sbjct: 326 NFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRG 360



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 183/473 (38%), Gaps = 86/473 (18%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM----LNVETFC 135
            F FFK   +  N E  V  Y+++++ L +  + +I  ++V  M  K+M     +V T+ 
Sbjct: 187 GFRFFKEMSRF-NCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGM-VKKMKDLSPDVVTYT 244

Query: 136 IIMRKYARVQKVEEAVYTFNVM----------------------QKY------------- 160
            ++R Y   Q+++EA+  F  M                      QK+             
Sbjct: 245 TLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGG 304

Query: 161 -GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR 218
            G   +   +N L++A C + N  +A ++F  MK+ +  PDS TYS+L+    +  +  R
Sbjct: 305 RGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFER 364

Query: 219 AREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRPTS 270
           A ++F ++ D        GC P +  Y  + D LCK G+  +A  + +  M      P S
Sbjct: 365 AEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPS 424

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y  L+  +  E   E      L M +   + D   Y  LI  F +  +    Y+ L+ 
Sbjct: 425 --YKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLER 482

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL---CEADADTYTM-------- 379
           M      P +   + IL+ L+      E+      MI        +  T+TM        
Sbjct: 483 MLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGL 542

Query: 380 ----------------------MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                                 +I   CQ G+L  A K+  +   K     ++  +V+I 
Sbjct: 543 RIKAFQIVELLYDNGYMVDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIE 602

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GLC      ++  L   ++EK           LR  L   GR +  KF+ ++M
Sbjct: 603 GLCKMKRPLEAFGLYYMLVEKSNHQQLSCLEGLRTALEAGGRSEEAKFVSKRM 655


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 195/409 (47%), Gaps = 35/409 (8%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE--------HSVRAY------HSMIESL 107
           +PE   ++L K +N   L   F  WA   Q +         H +  +       ++ E +
Sbjct: 47  TPEAASNLLLKSQNNQELILKFLTWANPHQFFTLRCKCITLHILTRFKLYKTAQTLAEDV 106

Query: 108 AK-----------IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           A             R  Q  +DL N+  +        F ++++ Y+R+  +++A+   ++
Sbjct: 107 AAKTLDDEDASLVFRSLQETYDLCNSTSS-------VFDLVVKSYSRLCLIDKALSIVHL 159

Query: 157 MQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
            Q +G    + ++N +L A  +SK N+  A+ +F + ++ +  P+  TY+IL+ G+    
Sbjct: 160 SQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAG 219

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           NL  A   F  M   GC P++VTY  ++D  CK  ++D+   +++SM      P    Y+
Sbjct: 220 NLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYN 279

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           V+++    E R+++      EM K G   D   YN LI  +CK   F     +  +M   
Sbjct: 280 VVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G++P+  T   +++ +   G  + A     +M ++    +  TYT ++  F Q G + +A
Sbjct: 340 GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           ++V K M    F PS+ T++ LING C  G + D+  +LEDM EKG+ P
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTP 448



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 180/373 (48%), Gaps = 3/373 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q     +V  Y+ +I          +     + M  K  L NV T+  ++  Y +++K++
Sbjct: 198 QSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKID 257

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           +       M   G+  NL ++N +++ LC+   +++   +   M  R +  D  TY+ L+
Sbjct: 258 DGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLI 317

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K+ N  +A  +  EM+  G +P ++TY  ++  +CKAG ++ A   +  M      
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLC 377

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ LV  +  +  + +A     EM  NG    V  YNALI   C A K  +   V
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           L+DM  KG+ P+  + + +L+G     + DEA RV R+M+ K  + D  TY+ +I+ FC+
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCE 497

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
               ++A  ++  M      P   T++ LIN  C +G +  +  L  +M+EKG+ P   T
Sbjct: 498 QRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVT 557

Query: 447 FGKLRKLLIKEGR 459
           +  L   L K+ R
Sbjct: 558 YSVLINGLNKQAR 570



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 181/388 (46%), Gaps = 22/388 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y S+I S+ K        + ++ MR + +  N  T+  ++  +++   + EA    
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M   G + ++  +N L++  C +  +  A  + + MK++   PD  +YS +L G+ + 
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRS 463

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            ++  A  + R+MV  G  PD +TY  ++   C+  R  EA  +   M      P  F Y
Sbjct: 464 YDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTY 523

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y +E  ++ A+    EM + G+L DV  Y+ LI    K  + +   R+L  +  
Sbjct: 524 TALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFY 583

Query: 334 KGVAPNSRT--------CNI-------ILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
           +   P+  T         NI       ++ G   +G   EA +VF  M+ K  + D   Y
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAY 643

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV--LINGLCDKGIVSDSCVLLEDM 435
            +MI   C+GG++ KA+ ++K M    F+  +HT +V  L+  L  +G V++   ++ ++
Sbjct: 644 NVMIHGHCRGGDIRKAYSLYKEMVKSGFL--LHTVTVIALVKTLHKEGKVNELNSVIANV 701

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVL 463
           +        E    L ++  +EG  DV+
Sbjct: 702 LRSCELSEAEQAKVLVEINHREGNMDVV 729



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 243 DVLCKAGRVDEALGIVKSMDST--VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           DV  K    ++A  + +S+  T  +C  TS ++ ++V +Y     I+ A+      + +G
Sbjct: 105 DVAAKTLDDEDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHG 164

Query: 301 ILADVAMYNALIGAFCKANK-FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
            +  V  YNA++ A  ++ +       V K+M    V+PN                    
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPN-------------------- 204

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
             VF            TY ++I+ FC  G L+ A + +  M+ K  +P++ T++ LI+G 
Sbjct: 205 --VF------------TYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGY 250

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           C    + D   LL  M  KG+ P+  ++  +   L +EGR   + F+  +MN
Sbjct: 251 CKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMN 302


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 200/398 (50%), Gaps = 5/398 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCII 137
           +A  FF WA +Q  Y H    Y+ M++ L+K +  Q    ++  M  + +    E F  +
Sbjct: 118 IALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHV 177

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           M  Y+R  K+  A+    +MQK GV  NL   N  +  L  +  + KA    + M+   I
Sbjct: 178 MVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGI 237

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  TY+ L++G+     +  A E+  EM   GC PD V+Y  ++  LC+  R+ E   
Sbjct: 238 TPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRN 297

Query: 257 IVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           +++ M       P    Y+ LVH        ++A++   E E+ G   D   Y+A++ +F
Sbjct: 298 LMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSF 357

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           C   +      ++ +M +KG +P+  T   ++NGL   G+ +EA ++ ++M K  C+ + 
Sbjct: 358 CMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNT 417

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +YT ++   CQ G   +A ++    +   + P+  T+SV+++GL  +G +S++C ++ +
Sbjct: 418 VSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVRE 477

Query: 435 MIEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQEKMN 471
           M+ KG  P+      L + L +++   +  KF++E +N
Sbjct: 478 MLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLN 515



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 170/376 (45%), Gaps = 39/376 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +++ Y  + +VE A+     M   G   +  ++  ++  LC+ K +++ + + 
Sbjct: 240 NVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLM 299

Query: 190 DCM--KDRFIPDSKTYSILLEGWGKDPN-------------------------------- 215
           + M   ++  PD  TY+ L+    K  +                                
Sbjct: 300 EKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCM 359

Query: 216 ---LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              + RA+EI  EM+  GC+PD+VTY  +V+ LCK G+V+EA  +++ M    C+P +  
Sbjct: 360 QGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVS 419

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++         +A +     E++    +   Y+ ++    +  K      V+++M 
Sbjct: 420 YTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREML 479

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
           +KG  P     N+++  L    + +EA +     + + C  +A  +T +I  FCQ   ++
Sbjct: 480 TKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNID 539

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +   M L    P   TF+ +I+ L  KG + ++ V    M++KG+ P+  T+  + 
Sbjct: 540 TALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVI 599

Query: 452 KLLIKEGR-EDVLKFL 466
               K GR E+++K L
Sbjct: 600 HQYCKMGRVEELIKLL 615



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 168/380 (44%), Gaps = 42/380 (11%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y +++ S     +     ++VN M TK    +V T+  ++    +V KVEEA      M
Sbjct: 349 GYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQM 408

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
            K+G   N  ++  LL+ LC+  N  +A+E+ +  + D + P++ TYS+++ G  ++  L
Sbjct: 409 YKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKL 468

Query: 217 PRAREIFREMV-----------------------------------DTGCNPDIVTYGIM 241
             A ++ REM+                                   + GC  + V +  +
Sbjct: 469 SEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTV 528

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +   C++  +D AL ++  M      P +  ++ ++   G + RIE+A    ++M K G+
Sbjct: 529 IHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGL 588

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC-NIILNGLIGRGETDEAY 360
                 Y A+I  +CK  + + + ++L  M S+      RT  N ++  L   G  + A 
Sbjct: 589 DPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRS---KCRTAYNQVIEKLCNFGNPEAAD 645

Query: 361 RVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +V   +++     DA+T  M+++ +   G    A+KV   M  +  IP +     L   L
Sbjct: 646 KVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVACRMFDRNLIPDLKLCEKLSKKL 705

Query: 420 CDKGIVSDSCVLLEDMIEKG 439
             +G + ++  L+   +++G
Sbjct: 706 VLEGKLEEADNLMLQFVQRG 725



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 169/382 (44%), Gaps = 52/382 (13%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V +FC+      R+ + +E V   N M   G + ++  +  +++ LCK   V +A+++  
Sbjct: 354 VNSFCM----QGRMDRAKEIV---NEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQ 406

Query: 191 CM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M K    P++ +Y+ LL G  +  N   ARE+     +    P+ +TY +++  L + G
Sbjct: 407 QMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREG 466

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           ++ EA  +V+ M +    PT    ++L+ +  +E ++ +A     E    G   +   + 
Sbjct: 467 KLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFT 526

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            +I  FC+++       +L DM      P++ T   I++ L  +G  +EA     +M+K 
Sbjct: 527 TVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKK 586

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG----- 423
             +    TY  +I  +C+ G +E+  K+   M  +    +   ++ +I  LC+ G     
Sbjct: 587 GLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRT--AYNQVIEKLCNFGNPEAA 644

Query: 424 -------------IVSDSC-VLLEDMIEKGIR----------------PSGETFGKLRKL 453
                        I +++C +L+E  + KGI                 P  +   KL K 
Sbjct: 645 DKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVACRMFDRNLIPDLKLCEKLSKK 704

Query: 454 LIKEGREDVLKFLQEKMNLLVK 475
           L+ EG+      L+E  NL+++
Sbjct: 705 LVLEGK------LEEADNLMLQ 720


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 185/378 (48%), Gaps = 10/378 (2%)

Query: 91  QNYEHSVRAYHS---MIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQK 146
           Q+Y +S+ +Y S   +I++L K + Y  +  + + M +  +    T    ++  +   QK
Sbjct: 50  QDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQK 109

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYS 204
              A     ++ K G   N+  FN LL   C+S +  KA ++F CM  R   IPD  +Y+
Sbjct: 110 PSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLF-CMMKRNCLIPDCVSYN 168

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            ++ G  K   L  A+E+F+EM    C P+ VT+  ++D  CK G V+E  G+++ M+  
Sbjct: 169 TVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKM 228

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                 F+YS L+  +  +  IE   + F EM +  +  +V  Y+ L+ A CK  K+K  
Sbjct: 229 GLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEA 288

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKM 383
            ++L  M    V P+     ++ +GL   G   +A +V   M+K  E   + TY  +I  
Sbjct: 289 AQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIING 348

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK--GIR 441
            C+ G ++ A  + + M  K   P + T+S L+ GLC  G + ++  LL  ++ K   I+
Sbjct: 349 LCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIK 408

Query: 442 PSGETFGKLRKLLIKEGR 459
           P    F  + + L K+ R
Sbjct: 409 PDVFAFNLVIQELCKQRR 426



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 197/474 (41%), Gaps = 91/474 (19%)

Query: 89  KQQNYEHSVRAYHSM---------------IESLAKIRQYQIMWDLVN-AMRTKRMLNVE 132
           K ++Y+H +  +  M               IES    ++    + ++   M+    LNV 
Sbjct: 71  KAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVY 130

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            F ++++ + +     +A+  F +M++  +  +  ++N +++ LCK K + +A+E+F  M
Sbjct: 131 NFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEM 190

Query: 193 KD-RFIPDSKTYSILLEGWGKDPN-----------------------------------L 216
           K     P+S T+S L++G+ K+ +                                   +
Sbjct: 191 KGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDI 250

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            R +E+F EM+     P++VTY  +++ LCK  +  EA  ++ +M     RP    Y+VL
Sbjct: 251 ERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVL 310

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                   R  DA+     M K G   +   YNA+I   CK  +  +   +L+ M  KG 
Sbjct: 311 ADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGK 370

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI------------------KLCE------- 371
            P+  T + ++ GL G G+ DEA  +   ++                  +LC+       
Sbjct: 371 KPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHA 430

Query: 372 -------------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                        ++  TY ++I  +   G+L KA ++WK        P+  T++VLING
Sbjct: 431 KRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLING 490

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           LC   ++S +  L       G RP+   +  L   L +E   E      QE  N
Sbjct: 491 LCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRN 544



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 39/380 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V  +  ++  +     +E     FN M +  VT N+  ++ L++ALCK +  ++A ++ 
Sbjct: 233 DVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQML 292

Query: 190 DCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M   +  PD   Y++L +G  K+     A ++   MV  G  P+ VTY  +++ LCK 
Sbjct: 293 DTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKE 352

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKN-GILADVA 306
           GRVD+ALGI+++M     +P    YS LV       +I++AVD   L M K   I  DV 
Sbjct: 353 GRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVF 412

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N +I   CK  + ++  RV   M  +G   N  T NI+++G +  G+  +A  +++  
Sbjct: 413 AFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDA 472

Query: 367 IKL-CEADADTYTMMI----KM-------------------------------FCQGGEL 390
           +      +A TYT++I    KM                                C+   +
Sbjct: 473 VDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSV 532

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E+A  +++ M+     P + +F+++I+G    G V  +  LL +M+   + P   TF  L
Sbjct: 533 EQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSIL 592

Query: 451 RKLLIKEGREDVLKFLQEKM 470
               +K G+ D    L E+M
Sbjct: 593 INRFLKLGQLDEAASLYERM 612



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 170/328 (51%), Gaps = 5/328 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L K  +      ++  M  K +  +V T+  +++    V K++EAV   N++
Sbjct: 341 TYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLL 400

Query: 158 --QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDP 214
             +++ +  ++ AFN ++  LCK + +R A+ ++  M +R  P +  TY+IL++G+    
Sbjct: 401 MSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAG 460

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L +A E++++ VD+G +P+  TY ++++ LCK   +  A G+     ++  RPT   Y+
Sbjct: 461 KLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYN 520

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+ +   E+ +E A + F EM       DV  +N +I    KA   ++   +L +M + 
Sbjct: 521 TLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNM 580

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKA 393
            + P++ T +I++N  +  G+ DEA  ++ RM+      DA  +  ++K +   G+ EK 
Sbjct: 581 NLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKV 640

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             + + M  K  +      S ++  LC+
Sbjct: 641 VSMLQQMADKDVVLDSKLTSTILACLCN 668



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 136/276 (49%), Gaps = 17/276 (6%)

Query: 89  KQQNYEHSVRAYHSMIES--LAKIRQYQIMWD-LVNAMRTKRML-------------NVE 132
           KQ+   H+ R Y++M+E    + I  Y I+ D  ++A +  + L             N  
Sbjct: 423 KQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAA 482

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++    ++Q +  A   FN  +  G    ++ +N L+++LC+  +V +A+ +F  M
Sbjct: 483 TYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEM 542

Query: 193 KD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++    PD  +++I+++G  K  ++  A+E+  EM++    PD +T+ I+++   K G++
Sbjct: 543 RNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQL 602

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEA  + + M S    P + ++  L+  Y ++ + E  V    +M    ++ D  + + +
Sbjct: 603 DEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTI 662

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +   C  +K  ++ ++L   +       S  CN +L
Sbjct: 663 LACLCNMSKDVDIEKILPKFSQHTSVGASIKCNELL 698


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 181/363 (49%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y +++  L K     +   L+  M   ++  +V  +  I+      + V +A+  F  M
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 281

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              G+  N+  +N L+  LC       A  +   M +R I P+  T+S L++ + K+  L
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +++ EM+    +PDI TY  +++  C   R+DEA  + + M S  C P    Y+ L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+E+ ++ F EM + G++ +   YN LI    +A       ++ K M S GV
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T +I+L+GL   G+ ++A  VF  + K   E D  TY +MI+  C+ G++E  + 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P++  ++ +I+G C KG+  ++  L  +M E G  P+  T+  L +  +
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581

Query: 456 KEG 458
           ++G
Sbjct: 582 RDG 584



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 192/378 (50%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK+ ++ ++  L   M+  R+  ++ ++ I++  + R  ++  A+   
Sbjct: 79  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL 138

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K + +A  + D M    + P++ T++ L+ G    
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 198

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+ TYG +V+ LCK G +D AL ++K M+         IY
Sbjct: 199 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        + DA++ F EM+  GI  +V  YN+LI   C   ++ +  R+L DM  
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  +  G+  EA +++  MIK   + D  TY+ +I  FC    L++
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M  K   P++ T++ LI G C    V +   L  +M ++G+  +  T+  L +
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G  D+ + + +KM
Sbjct: 439 GLFQAGDCDMAQKIFKKM 456



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 176/359 (49%), Gaps = 25/359 (6%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWAEK--------QQNYEHSVRAY 100
           L T +D  GIR  P +V        N+     C + +W++         ++    +V  +
Sbjct: 277 LFTEMDNKGIR--PNVVT------YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 328

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVMQ 158
            ++I++  K  +      L + M  KR ++ +  T+  ++  +    +++EA + F +M 
Sbjct: 329 SALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
                 N+  +N L+   CK+K V +  E+F  M  R  + ++ TY+ L++G  +  +  
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A++IF++MV  G  PDI+TY I++D LCK G++++AL + + +  +   P  + Y++++
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMI 507

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  ++ED  D F  +   G+  +V +Y  +I  FC+    +    + ++M   G  
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 567

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAF 394
           PNS T N ++   +  G+   +  + + M + C    DA T +M+I M    G LEK++
Sbjct: 568 PNSGTYNTLIRARLRDGDKAASAELIKEM-RSCGFVGDASTISMVINML-HDGRLEKSY 624



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 182 VRKAQEIFDCMKDRFIPDSKTY------SILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           +RKA  +F      F   S  Y      ++LL     D  L  A ++F EMV +   P I
Sbjct: 26  LRKASPLFSLRGVYFSAASYDYREKLSRNVLL-----DLKLDDAVDLFGEMVQSRPLPSI 80

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           V +  ++  + K  + D  + + + M +       + Y++L++ +   +++  A+    +
Sbjct: 81  VEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGK 140

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M K G   D+   ++L+  +C   +      ++  M      PN+ T N +++GL    +
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA  +  RM+ + C+ D  TY  ++   C+ G+++ A  + K M+  +    +  ++ 
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 260

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +I+ LC+   V+D+  L  +M  KGIRP+  T+  L + L   GR
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 305


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 175/355 (49%), Gaps = 3/355 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ +I  L K  + +   +++  M T     N  TFC+++  Y R   +  A+   + M
Sbjct: 370 TYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 429

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
           +K  +  +  ++  +++ LC  K++  A ++ + M      P+   YSIL+  +  +  +
Sbjct: 430 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             AR +   M  +G  PDI  Y  ++  L KAG+++EA   +  +     +P +  +   
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y    ++ +A   F EM  +G++ +  +Y  LI    KA        + + +++ GV
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+ +TC+  ++GL+  G   EA +VF  +  K    D  TY+ +I  FC+ GE+EKAF+
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 669

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +   M LK   P++  ++ L++GLC  G +  +  L + M EKG+ P   T+  +
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 724



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 179/354 (50%), Gaps = 3/354 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +++N   S  +Y +MI  L   +   +   L+  M    +  NV  + I++  YA   ++
Sbjct: 430 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           EEA    + M   GV  ++  +N ++S L K+  + +A      ++ R + PD+ T+   
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A + F EM+D G  P+   Y ++++   KAG + EAL I + + +   
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P     S  +H      R+++A+  F E+++ G++ DV  Y++LI  FCK  + +  + 
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 669

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +  +M  KG+APN    N +++GL   G+   A ++F  M  K  E D+ TY+ MI  +C
Sbjct: 670 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 729

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +   + +AF ++  M  K   P    ++ L++G C +G +  +  L  +M++KG
Sbjct: 730 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 783



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 185/432 (42%), Gaps = 73/432 (16%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  +IE + ++       +L  +M  K ++ N  T+ II     R +++ EA  TF  MQ
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 159 KYG-----------------------------------VTQNLAAFNGLLSALCKSKNVR 183
           K G                                   +  NL  +N L+  LCK   + 
Sbjct: 326 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKME 385

Query: 184 KAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           KA EI   M      P+S+T+ +L+EG+ ++ N+ RA E+  EM      P  V+YG M+
Sbjct: 386 KAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMI 445

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + LC    +  A  +++ M  +  +P   +YS+L+  Y  E RIE+A      M  +G+ 
Sbjct: 446 NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVA 505

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN------------------ 344
            D+  YNA+I    KA K +     L ++  +G+ P++ T                    
Sbjct: 506 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 565

Query: 345 -----------------IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
                            +++NG    G   EA  +FRR+  L    D  T +  I    +
Sbjct: 566 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLK 625

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +++A KV+  +K K  +P + T+S LI+G C +G V  +  L ++M  KGI P+   
Sbjct: 626 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 685

Query: 447 FGKLRKLLIKEG 458
           +  L   L K G
Sbjct: 686 YNALVDGLCKSG 697



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 159/323 (49%), Gaps = 3/323 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M N   + +++  + +   + EA+  F  +   GV  ++   +  +  L K+  V++A +
Sbjct: 575 MPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 634

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +F  +K++  +PD  TYS L+ G+ K   + +A E+  EM   G  P+I  Y  +VD LC
Sbjct: 635 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC 694

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K+G +  A  +   M      P S  YS ++  Y     + +A   F EM   G+     
Sbjct: 695 KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSF 754

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +YNAL+   CK    +    + ++M  KG A  + + N +++G     +  EA ++F+ M
Sbjct: 755 VYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEM 813

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           I K    D  TYT +I   C+ G++E+A  ++K M+ +  I    T++ L+ G    G  
Sbjct: 814 IAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQS 873

Query: 426 SDSCVLLEDMIEKGIRPSGETFG 448
           S+   L E M+ KG++P   T+G
Sbjct: 874 SEVFALFEKMVAKGVKPDEVTYG 896



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 185/368 (50%), Gaps = 4/368 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V+   + I  L K  + Q    + + ++ K ++ +V T+  ++  + +  +VE+A    +
Sbjct: 613 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 672

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   G+  N+  +N L+  LCKS ++++A+++FD M ++ + PDS TYS +++G+ K  
Sbjct: 673 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N+  A  +F EM   G  P    Y  +V   CK G +++A+ + + M       T+  ++
Sbjct: 733 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GFATTLSFN 791

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y    +I++A   F EM    I+ D   Y  +I   CKA K +    + K+M  +
Sbjct: 792 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 851

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
            +  ++ T   ++ G    G++ E + +F +M+ K  + D  TY ++I   C+   L +A
Sbjct: 852 NLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEA 911

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           FK+   +  K  +       +LI  LC +  ++++  LL++M E G++PS      L + 
Sbjct: 912 FKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRS 971

Query: 454 LIKEGRED 461
             + G+ D
Sbjct: 972 FHEAGKMD 979



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 168/339 (49%), Gaps = 1/339 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF   +  Y++  K+ EA   F+ M  +G+  N   +  L++   K+ N+ +A  IF  +
Sbjct: 545 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRL 604

Query: 193 KD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
                +PD +T S  + G  K+  +  A ++F E+ + G  PD+ TY  ++   CK G V
Sbjct: 605 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 664

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A  +   M      P  FIY+ LV        I+ A   F  M + G+  D   Y+ +
Sbjct: 665 EKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 724

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I  +CK+      + +  +M SKGV P+S   N +++G    G+ ++A  +FR M++   
Sbjct: 725 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
           A   ++  +I  +C+  ++++A ++++ M  K+ +P   T++ +I+  C  G + ++ +L
Sbjct: 785 ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 844

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            ++M E+ +     T+  L     K G+   +  L EKM
Sbjct: 845 FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 883



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 174/340 (51%), Gaps = 2/340 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F I++  Y R+  ++EA   F V +   +  +L   N LL  L K   +    ++++ M 
Sbjct: 161 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGML 220

Query: 194 D-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           D +   D  TY+ L+    K  +L  A+ +  EM + G NP+   Y ++++ +C+ G +D
Sbjct: 221 DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDID 280

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA+ + +SM      P ++ Y+++        R+ +A  TF EM+K G+  D    +ALI
Sbjct: 281 EAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALI 340

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             F +      V R+   M S G+  N  T N++++GL   G+ ++A  + + M+ L C+
Sbjct: 341 DGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCK 400

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            ++ T+ ++I+ +C+   + +A ++   M+ +  +PS  ++  +INGLC    +S +  L
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 460

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           LE M   G++P+   +  L      EGR +  + L + M+
Sbjct: 461 LEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMS 500



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 188/438 (42%), Gaps = 43/438 (9%)

Query: 62  SPEIVEDVLEKFRNAGTL---AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           SP + + +++ ++  G L   A  FF    K  +   S+   +S+++ L K    ++ W 
Sbjct: 157 SPVVFDILIDSYKRMGMLDEAANVFF--VAKNDSILISLIRCNSLLKDLLKCGMMELFWK 214

Query: 119 LVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           + N M   +M  +V T+  ++    +   +  A      M + G+  N   ++ ++  +C
Sbjct: 215 VYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMC 274

Query: 178 KSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD-- 234
           +  ++ +A E+   M ++  +P++ TY+I+  G  +   +  A+  F EM  TG  PD  
Sbjct: 275 QVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYN 334

Query: 235 ---------------------------------IVTYGIMVDVLCKAGRVDEALGIVKSM 261
                                            ++TY +++  LCK G++++A  I+K M
Sbjct: 335 ACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 394

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +  C+P S  + +L+  Y  E+ +  A++   EMEK  ++     Y A+I   C     
Sbjct: 395 VTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDL 454

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMM 380
               ++L+ M   G+ PN    +I++      G  +EA R+   M       D   Y  +
Sbjct: 455 SLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 514

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I    + G++E+A      ++ +   P   TF   I G    G ++++    ++M++ G+
Sbjct: 515 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 574

Query: 441 RPSGETFGKLRKLLIKEG 458
            P+   +  L     K G
Sbjct: 575 MPNNPLYTVLINGHFKAG 592



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 100  YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            Y+++++ L K    Q    L + M  K +  +  T+  ++  Y + + V EA   F+ M 
Sbjct: 686  YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 745

Query: 159  KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
              GV  +   +N L+   CK  ++ KA  +F  M  +    + +++ L++G+ K   +  
Sbjct: 746  SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 805

Query: 219  AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
            A ++F+EM+     PD VTY  ++D  CKAG+++EA  + K M        +  Y+ L++
Sbjct: 806  ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 865

Query: 279  TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             Y    +  +    F +M   G+  D   Y  +I A CK +     +++  ++  KG+  
Sbjct: 866  GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 925

Query: 339  NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
                 ++++  L  R +  EA ++   M +L  +        +++ F + G++++A +V+
Sbjct: 926  KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVF 985

Query: 398  KYMKLKRFIPSMHTFSVLING 418
            + +K    +P   T   L+NG
Sbjct: 986  EGVKSLGLVPDTTTLIDLVNG 1006


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 181/363 (49%), Gaps = 3/363 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y +++  L K     +   L+  M   ++  +V  +  I+      + V +A+  F  M
Sbjct: 206 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 265

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              G+  N+  +N L+  LC       A  +   M +R I P+  T+S L++ + K+  L
Sbjct: 266 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 325

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +++ EM+    +PDI TY  +++  C   R+DEA  + + M S  C P    Y+ L
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+E+ ++ F EM + G++ +   YN LI    +A       ++ K M S GV
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T +I+L+GL   G+ ++A  VF  + K   E D  TY +MI+  C+ G++E  + 
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P++  ++ +I+G C KG+  ++  L  +M E G  P+  T+  L +  +
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 565

Query: 456 KEG 458
           ++G
Sbjct: 566 RDG 568



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 192/378 (50%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  ++ ++ ++AK+ ++ ++  L   M+  R+  ++ ++ I++  + R  ++  A+   
Sbjct: 63  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL 122

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M K G   ++   + LL+  C  K + +A  + D M    + P++ T++ L+ G    
Sbjct: 123 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 182

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+ TYG +V+ LCK G +D AL ++K M+         IY
Sbjct: 183 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 242

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        + DA++ F EM+  GI  +V  YN+LI   C   ++ +  R+L DM  
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  +  G+  EA +++  MIK   + D  TY+ +I  FC    L++
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M  K   P++ T++ LI G C    V +   L  +M ++G+  +  T+  L +
Sbjct: 363 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 422

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G  D+ + + +KM
Sbjct: 423 GLFQAGDCDMAQKIFKKM 440



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 176/359 (49%), Gaps = 25/359 (6%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWAEK--------QQNYEHSVRAY 100
           L T +D  GIR  P +V        N+     C + +W++         ++    +V  +
Sbjct: 261 LFTEMDNKGIR--PNVVT------YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 312

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVMQ 158
            ++I++  K  +      L + M  KR ++ +  T+  ++  +    +++EA + F +M 
Sbjct: 313 SALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 371

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
                 N+  +N L+   CK+K V +  E+F  M  R  + ++ TY+ L++G  +  +  
Sbjct: 372 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 431

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A++IF++MV  G  PDI+TY I++D LCK G++++AL + + +  +   P  + Y++++
Sbjct: 432 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMI 491

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  ++ED  D F  +   G+  +V +Y  +I  FC+    +    + ++M   G  
Sbjct: 492 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 551

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAF 394
           PNS T N ++   +  G+   +  + + M + C    DA T +M+I M    G LEK++
Sbjct: 552 PNSGTYNTLIRARLRDGDKAASAELIKEM-RSCGFVGDASTISMVINML-HDGRLEKSY 608



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 182 VRKAQEIFDCMKDRFIPDSKTY------SILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           +RKA  +F      F   S  Y      ++LL     D  L  A ++F EMV +   P I
Sbjct: 10  LRKASPLFSLRGVYFSAASYDYREKLSRNVLL-----DLKLDDAVDLFGEMVQSRPLPSI 64

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           V +  ++  + K  + D  + + + M +       + Y++L++ +   +++  A+    +
Sbjct: 65  VEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGK 124

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M K G   D+   ++L+  +C   +      ++  M      PN+ T N +++GL    +
Sbjct: 125 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 184

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA  +  RM+ + C+ D  TY  ++   C+ G+++ A  + K M+  +    +  ++ 
Sbjct: 185 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 244

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +I+ LC+   V+D+  L  +M  KGIRP+  T+  L + L   GR
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 289


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 172/343 (50%), Gaps = 2/343 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  + I++    R   V+E    +N M   GV  N   +  L+  LC      +   + 
Sbjct: 184 NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLV 243

Query: 190 DCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  R +  S   +++L++G  K+  L  ARE+F EMV+ G  P+IVT   ++   C  
Sbjct: 244 DEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLK 303

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G VD A  +  ++     +   + Y+V +H Y    R+ DAV  F EM + G++ ++  Y
Sbjct: 304 GNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTY 363

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N+LI   CKA +    + ++K M+  G+ P+  TC I+L+GL      D+A  +F ++++
Sbjct: 364 NSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVE 423

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  +YT++I   C    + +A  + + M LK  +P + T+S LI+GLC  G +S+
Sbjct: 424 SGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISN 483

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  LL +M  KG  P   T+  L   L K+   D   FL  +M
Sbjct: 484 AWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQM 526



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 160/296 (54%), Gaps = 2/296 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T   +M  Y     V+ A   F+ + ++G  +++  +N  +   CK   VR A  +F
Sbjct: 289 NIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVF 348

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M ++  +P+  TY+ L++   K   +  A EI + M  +G  PDIVT  I++D LCK+
Sbjct: 349 DEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKS 408

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+D+A+ +   +  +   P  + Y++L+H      R+ +A++   +M    ++  +  Y
Sbjct: 409 KRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTY 468

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + LI   C++ +  N +R+L +M+ KG  P++ T +I+L+ L  +   DEA  +F +MIK
Sbjct: 469 SCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIK 528

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
              E D   YT+MI  +C+   +++A  +++ M +K  +P + T+++L N +   G
Sbjct: 529 RGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 153/349 (43%), Gaps = 54/349 (15%)

Query: 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
           ++D +     KR  +V T+ + +  Y +V +V +AV  F+ M + GV  N+  +N L+  
Sbjct: 312 LFDAIGEWGFKR--DVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDC 369

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK+  V  A EI   M +    PD  T  ILL+G  K   L +A  +F ++V++G  PD
Sbjct: 370 LCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPD 429

Query: 235 -----------------------------------IVTYGIMVDVLCKAGRVDEALGIVK 259
                                              IVTY  ++D LC++GR+  A  ++ 
Sbjct: 430 VWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLN 489

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      P +  YS+L+     +  +++AV  F +M K G+  DV  Y  +I  +CK+ 
Sbjct: 490 EMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSE 549

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY-------------RVFRRM 366
           +      + ++M+ K + P+  T  I+ N +   G     +             RV + +
Sbjct: 550 RIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKYL 609

Query: 367 IKLCEADADTYTMMIKMFCQ-GGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             LC+++   Y  +   F    G L+ +  V +++K    +  MH  ++
Sbjct: 610 AALCKSEHLDYKCLASEFASYAGSLQTS--VSQHIKATMEMMYMHCLAI 656



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 135/269 (50%), Gaps = 9/269 (3%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D+   + +L+G   +  + +A E   E+V+ G + + V+YGI+++ LC+ GRV+EA+ ++
Sbjct: 106 DTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLL 165

Query: 259 KSM--------DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           + +        D    +    +YS+++        +++  + + EM  NG+  +   Y +
Sbjct: 166 RMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGS 225

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI   C   KF   + ++ +M  +G+  +     ++++GL   G   EA  +F  M+ + 
Sbjct: 226 LIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRG 285

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            E +  T T ++  +C  G ++ A +++  +    F   + T++V I+G C  G V D+ 
Sbjct: 286 YEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAV 345

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            + ++M  +G+ P+  T+  L   L K G
Sbjct: 346 RVFDEMCREGVVPNIVTYNSLIDCLCKAG 374


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 206/433 (47%), Gaps = 4/433 (0%)

Query: 41  IMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA 99
           I+ S P    L+ +L   G +  PE+V  VL++ ++A T A  +F+WAEKQ    H   A
Sbjct: 69  ILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKDANT-AVNYFQWAEKQTEKVHCPEA 127

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQ 158
           Y+S++  +A+  ++  +  ++  M            I ++    + +K+ EA      M+
Sbjct: 128 YNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMR 187

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
           K+      +A+  L+ AL + +       +F  M++  +  +   ++ L+  + ++  + 
Sbjct: 188 KFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVD 247

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  EM     + DIV Y + +D   KAG+VD +      M S    P    Y+ ++
Sbjct: 248 AALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMI 307

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 NR+++AV+ F ++E+N  +     YN +I  +  A KF   Y +L+   +KG  
Sbjct: 308 GVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSI 367

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           P+    N IL  L  +   +EA R+F  M +    +  TY ++I M C+ G+L  A ++ 
Sbjct: 368 PSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIR 427

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M+     P++ T +++I+ LC    + ++C + E M +K   P+  TF  L   L K 
Sbjct: 428 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 487

Query: 458 GREDVLKFLQEKM 470
           GR D    L EKM
Sbjct: 488 GRVDDAYSLYEKM 500



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 193/390 (49%), Gaps = 9/390 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI  L K  +     +L   +   R +     +  ++  Y    K +EA       +
Sbjct: 303 YTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQK 362

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             G   ++ A+N +L+ L K + V +A  IF+ MK   +P+  TY+IL++   ++  L  
Sbjct: 363 AKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNA 422

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A EI  +M   G  P+++T  IM+D LCKA +++EA  I + MD  VC P +  +S L+ 
Sbjct: 423 ALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLID 482

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G   R++DA   + +M   G +    +Y +LI +F K  + ++ +++ K+M   G +P
Sbjct: 483 GLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSP 542

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +    N  ++ +   GET++   +FR +       DA +Y+++I    + G   + ++++
Sbjct: 543 DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELF 602

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             MK +  +   H ++ +I+G C  G V+ +  LLE+M  KG  P+  T+G +   L K 
Sbjct: 603 YAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKI 662

Query: 458 GREDVLKFLQE-------KMNLLVKEPLCD 480
            R D    L E       K+N++V   L D
Sbjct: 663 DRLDEAYMLFEEAKSNGIKLNVVVYSSLID 692



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 168/354 (47%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + S+I+ L K  +    + L   M     +     +  ++R + +  + E+    +  M 
Sbjct: 477 FSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV 536

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G + +L   N  +  + K+    K + +F +     FIPD+++YSIL+ G  K     
Sbjct: 537 HTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLAN 596

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              E+F  M + GC  D   Y  ++D  CK+G+V++A  +++ M      PT   Y  ++
Sbjct: 597 ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 656

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E + NGI  +V +Y++LI  F K  +    Y +++++  KG+ 
Sbjct: 657 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 716

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M  L C  +  TY+++I   C+  +  KAF  
Sbjct: 717 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 776

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           W+ M+     P+  T++ +I+GL   G + ++  L       G  P   ++  +
Sbjct: 777 WQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAM 830



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 197/438 (44%), Gaps = 78/438 (17%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           SV AY+ ++  L K R+ +    +   M+   + NV T+ I++    R  K+  A+   +
Sbjct: 369 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRD 428

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDP 214
            M++ G+  N+   N ++  LCK++ + +A  IF+ M D+   P++ T+S L++G GK  
Sbjct: 429 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 488

Query: 215 ----------------NLPRA-------------------REIFREMVDTGCNPDIVTYG 239
                           ++P A                    +I++EMV TGC+PD+    
Sbjct: 489 RVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLIN 548

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +D + KAG  ++   + + +++    P +  YS+L+H         +  + F  M++ 
Sbjct: 549 TYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQ 608

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G + D   YNA+I  FCK+ K    Y++L++M  KG  P   T   +++GL      DEA
Sbjct: 609 GCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEA 668

Query: 360 YRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT---- 411
           Y +F       IKL   +   Y+ +I  F + G +++A+ + + +  K   P+++T    
Sbjct: 669 YMLFEEAKSNGIKL---NVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCL 725

Query: 412 -------------------------------FSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
                                          +S+LINGLC     + + V  ++M + G+
Sbjct: 726 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL 785

Query: 441 RPSGETFGKLRKLLIKEG 458
           +P+  T+  +   L K G
Sbjct: 786 KPNTITYTTMISGLAKAG 803



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 141/334 (42%), Gaps = 14/334 (4%)

Query: 82  CFFKWAEKQ-----------QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-ML 129
           C FK  E +             +    R+Y  +I  L K       ++L  AM+ +  +L
Sbjct: 553 CVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVL 612

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   +  ++  + +  KV +A      M+  G    +  +  ++  L K   + +A  +F
Sbjct: 613 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLF 672

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K   I  +   YS L++G+GK   +  A  I  E++  G  P++ T+  ++D L KA
Sbjct: 673 EEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 732

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             ++EAL   +SM    C P    YS+L++      +   A   + EM+K G+  +   Y
Sbjct: 733 EEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITY 792

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
             +I    KA        +     + G  P+S + N ++ GL    +  +AY +F    +
Sbjct: 793 TTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRL 852

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           K C     T  +++    +   LE+A  V   +K
Sbjct: 853 KGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLK 886


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 175/365 (47%), Gaps = 3/365 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           K++     +  +++M+    K+ Q + +W L   M R K    V TF I++    +  K+
Sbjct: 193 KEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKL 252

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           ++A      M+  GV  N+  +N ++   C    V  A+ + D MK+R + PDS TY  L
Sbjct: 253 KKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSL 312

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  K   L  A  I  +M + G  P  VTY  ++D  C  G + +A G    M     
Sbjct: 313 ISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAI 372

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            PT   Y++L+H   +E ++++A     +M  +GI+ D   YN LI  +C+    K  + 
Sbjct: 373 LPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFN 432

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +  +M SKG+ P   T   ++  L  R     A  +F ++I+     D   +  +I   C
Sbjct: 433 LHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHC 492

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G L++AF + K M  +  +P   T++ L+ G C +G V ++  LL++M  +GIRP   
Sbjct: 493 ANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHI 552

Query: 446 TFGKL 450
           ++  L
Sbjct: 553 SYNTL 557



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 181/393 (46%), Gaps = 38/393 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  ++ MI  L K  + +   D + +M    +  NV T+  ++  Y    +VE A    
Sbjct: 235 TVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVL 294

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
           ++M+  GV  +   +  L+S +CK   + +A  I + MK+   +P + TY+ L++G+   
Sbjct: 295 DIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNK 354

Query: 214 PNLPRA---------REIF--------------------------REMVDTGCNPDIVTY 238
            +L +A         R I                           ++M D+G  PD +TY
Sbjct: 355 GDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITY 414

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I+++  C+ G   +A  +   M S   +PT   Y+ L++     NR++ A D F ++ +
Sbjct: 415 NILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR 474

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G   D+ M+NALI   C        + +LK+M+ + + P+  T N ++ G    G+ +E
Sbjct: 475 EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEE 534

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  + + M +     D  +Y  +I  + + G++  AF +   M    F P++ T++ LI 
Sbjct: 535 ARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQ 594

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           GLC       +  LL++M+ KGI P   T+  L
Sbjct: 595 GLCKNQQGDLAEELLKEMVSKGITPDDSTYFSL 627



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 160/331 (48%), Gaps = 2/331 (0%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDS 200
           +RV  V++  +   + +    T++   F+ L+ A C+ K    A E FD MK++  +P  
Sbjct: 142 SRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKI 201

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           +T++ +L  + K         ++ EM        + T+ IM++VLCK G++ +A   + S
Sbjct: 202 ETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGS 261

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M++   +P    Y+ ++H Y    R+E A      M+  G+  D   Y +LI   CK  K
Sbjct: 262 MENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGK 321

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTM 379
            +    +L+ M   G+ P + T N +++G   +G+  +A+     M+ +       TY +
Sbjct: 322 LEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNL 381

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I      G++++A  + K M     +P   T+++LING C  G    +  L ++MI KG
Sbjct: 382 LIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKG 441

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I+P+  T+  L  +L K  R      L EK+
Sbjct: 442 IQPTLVTYTSLIYVLSKRNRMKAADDLFEKI 472



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 1/228 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-C 191
           T+ I++  Y R    ++A    + M   G+   L  +  L+  L K   ++ A ++F+  
Sbjct: 413 TYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKI 472

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +++   PD   ++ L++G   + NL RA  + +EM      PD VTY  ++   C+ G+V
Sbjct: 473 IREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKV 532

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +EA  ++K M     RP    Y+ L+  Y     I DA     EM   G    +  YNAL
Sbjct: 533 EEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNAL 592

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           I   CK  +      +LK+M SKG+ P+  T   ++ G+    ++ EA
Sbjct: 593 IQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 2/196 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I  L+K  + +   DL   + R     ++  F  ++  +     ++ A      M
Sbjct: 448 TYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM 507

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K  +  +   +N L+   C+   V +A+E+   MK R I PD  +Y+ L+ G+ K  ++
Sbjct: 508 DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDI 567

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  I  EM+  G NP ++TY  ++  LCK  + D A  ++K M S    P    Y  L
Sbjct: 568 NDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSL 627

Query: 277 VHTYGVENRIEDAVDT 292
           +   G  +   +A D+
Sbjct: 628 IEGIGKVDDSSEASDS 643


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 202/400 (50%), Gaps = 9/400 (2%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV--ETFCI 136
           +A  FF WA++Q  Y H    Y++M++ L+K +  Q    ++  M T+R +    E F  
Sbjct: 182 VALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRLM-TRRGIECPPEAFGY 240

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           +M  Y+R  K+  A+    +MQK GV  +L+  N  +  L K   + KA +  + M+   
Sbjct: 241 VMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTG 300

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           I PD  TY+ L++G+     +  A E+   +   GC PD V+Y  ++  LCK  +++E  
Sbjct: 301 IKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVK 360

Query: 256 GIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
            +++ M  +S +  P    Y+ L+H        +DA+    E +  G   D   Y+A++ 
Sbjct: 361 CLMEKMVWNSNLI-PDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVH 419

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
           +FC+  +      ++ DM S+G  P+  T   I++G    G  DEA ++ ++M K  C+ 
Sbjct: 420 SFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKP 479

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  +YT ++   C  G+  +A ++    +   + P+  T+  +++GL  +G +S++C L 
Sbjct: 480 NTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLT 539

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            +M+EKG  P+      L + L +  +  +  K+L+E +N
Sbjct: 540 REMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLN 579



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 192/465 (41%), Gaps = 42/465 (9%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQ 112
           + + GI   PE    V+  +  AG L          Q+   E S+   ++ I  L K  +
Sbjct: 226 MTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGK 285

Query: 113 YQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +     +  M+ T    ++ T+  +++ Y  + ++E+A+     +   G   +  ++  
Sbjct: 286 LEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYT 345

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           ++  LCK K + + + + + M      IPD  TY+ L+    K  +   A    +E  D 
Sbjct: 346 VMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDK 405

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G + D V Y  +V   C+ GR+DEA  +V  M S  C P    Y+ +V  +    RI++A
Sbjct: 406 GFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEA 465

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
                +M K+G   +   Y AL+   C + K      ++         PN+ T   +++G
Sbjct: 466 KKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHG 525

Query: 350 LIGRGETDEAYRVFRRMI------------------------------------KLCEAD 373
           L   G+  EA  + R M+                                    K C  +
Sbjct: 526 LRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAIN 585

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              +T +I  FCQ G++E A  V   M L    P   T++ L + L  KG + ++  L+ 
Sbjct: 586 VVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIV 645

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
            M+ KG+ P+  T+  +     + GR D +  L EKM  L ++P 
Sbjct: 646 KMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKM--LKRQPF 688



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 157/347 (45%), Gaps = 8/347 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  I+  + R+ +++EA      M K+G   N  ++  LL+ LC S    +A+E+ 
Sbjct: 445 DVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 504

Query: 190 DCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  ++ +  P++ TY  ++ G  ++  L  A ++ REMV+ G  P  V   +++  LC+ 
Sbjct: 505 NVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQN 564

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +V EA   ++   +  C      ++ ++H +     +E A+    +M  +G   D   Y
Sbjct: 565 QKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTY 624

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            AL  A  K  +      ++  M SKG+ P   T   +++     G  D+   +  +M+K
Sbjct: 625 TALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLK 684

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             +     Y  +I+  C  G LE+A K+   +         +T  VL+     KG+   +
Sbjct: 685 R-QPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKGVAISA 743

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
             +   M  + + P  +   K+ K L+ +G+      L E  NL+++
Sbjct: 744 YKVACRMFRRNLTPDLKLCEKVSKKLVLDGK------LVEADNLMLR 784



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 131/320 (40%), Gaps = 43/320 (13%)

Query: 90  QQNYEHSVR----AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARV 144
           QQ Y+H  +    +Y +++  L    +     +++N         N  T+  +M    R 
Sbjct: 470 QQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRRE 529

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTY 203
            K+ EA      M + G        N L+ +LC+++ V +A++  + C+      +   +
Sbjct: 530 GKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNF 589

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + ++ G+ +  ++  A  +  +M  +G +PD VTY  + D L K GR+DEA  ++  M S
Sbjct: 590 TTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLS 649

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               PT   Y  ++H Y    R++D ++   +M K      V  YN +I   C     + 
Sbjct: 650 KGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTV--YNQVIEKLCDFGNLEE 707

Query: 324 VYRVLK---------DMNS----------KGVA----------------PNSRTCNIILN 348
             ++L          D N+          KGVA                P+ + C  +  
Sbjct: 708 AEKLLGKVLRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSK 767

Query: 349 GLIGRGETDEAYRVFRRMIK 368
            L+  G+  EA  +  R ++
Sbjct: 768 KLVLDGKLVEADNLMLRFVE 787


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 179/334 (53%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+ +I++   ++ +++ AV TF  M       ++  ++ L++ LCK + V +A  + 
Sbjct: 197 NLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLL 256

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M+ +  +P+  T+++L++   K+ +L RA ++   M   GC P+ VTY  ++  LC  
Sbjct: 257 DEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLK 316

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++D+AL +++ M S+ C P    Y  +++    + R ED V   + ME+ G  A+  +Y
Sbjct: 317 GKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIY 376

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           ++LI    K  K +N  R+ K+M  KG  PN       ++GL    + DEA  + + M+ 
Sbjct: 377 SSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS 436

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    +A TY+ ++K F + G+ +KA  VWK M  +    ++   SVL+NGLC+ G + +
Sbjct: 437 KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE 496

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +  +   M+ +G++P    +  + K L   G  D
Sbjct: 497 ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVD 530



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 182/392 (46%), Gaps = 7/392 (1%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVE 132
           +N  +++   FK   +  +Y+     ++ +IE+ A  R++  +  +++ M R  R+L   
Sbjct: 66  QNELSISPQIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTET 125

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSALCKSKNVRKA----QE 187
            F +I +   +     EAV  F+ M       Q + +FN +L+ + +  +   A      
Sbjct: 126 IFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLH 185

Query: 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +F      F P+  TY+++++   K   + RA + FREM    CNPD+ TY  +++ LCK
Sbjct: 186 VFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCK 245

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             RVDEA+ ++  M +  C P    ++VL+        +  A      M   G + +   
Sbjct: 246 ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVT 305

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI   C   K      +L+ M S    PN  T   I+NGL+ +   ++   +   M 
Sbjct: 306 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 365

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +  + A+   Y+ +I    + G+ E A ++WK M  K   P++  +   I+GLC      
Sbjct: 366 ERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPD 425

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           ++  +L++M+ KG  P+  T+  L K   K+G
Sbjct: 426 EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKG 457



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 169/395 (42%), Gaps = 39/395 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
            ++ +I++L+K         LV+ M  K  +  E T+  ++       K+++A+     M
Sbjct: 270 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 329

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
                  N   +  +++ L K +       I   M++R    +   YS L+ G  K+   
Sbjct: 330 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 389

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +++EM + GC P++V YG  +D LC+  + DEA  I++ M S    P +F YS L
Sbjct: 390 ENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSL 449

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +  +   + A+  + EM    +  +V   + L+   C++ + +    V   M  +G+
Sbjct: 450 MKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGL 509

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-----ADADTYTMMIKMFCQGGELE 391
            P+    + ++ GL   G  D+  ++F  M   C+      D  TY ++    C+   L 
Sbjct: 510 KPDVVAYSSMIKGLCDVGSVDKGLKLFYEM--QCQEPKSRPDVVTYNILFNALCRQDNLT 567

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS--CVLLEDMIEKGIRPSGETFGK 449
           +A                     L+N + D+G   DS  C +  + + + I P  +  G+
Sbjct: 568 RAID-------------------LLNSMLDEGCDPDSLTCNIFLETLRERINPPQD--GR 606

Query: 450 L------RKLLIKEGREDVLKFLQEK-MNLLVKEP 477
           L       +LL +E +   L+ ++E  +  L  EP
Sbjct: 607 LFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEP 641



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEME-----KNGILADVAMYNALI--GAFCKANKF 321
           T  I+ ++    G  +   +AV+ F  M      K  + +  ++ N +I  G F  A KF
Sbjct: 123 TETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKF 182

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMM 380
              Y  +   NSKG  PN  T N+I+  L   G+ D A   FR M +K C  D  TY+ +
Sbjct: 183 ---YLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTL 239

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +   C+   +++A  +   M+ +  +P+  TF+VLI+ L   G +S +  L+++M  KG 
Sbjct: 240 MNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGC 299

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P+  T+  L   L  +G+ D    L EKM
Sbjct: 300 VPNEVTYNTLIHGLCLKGKLDKALSLLEKM 329


>gi|356514549|ref|XP_003525968.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Glycine max]
          Length = 465

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 190/377 (50%), Gaps = 8/377 (2%)

Query: 95  HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVY 152
           HS+R+Y  +I  LA+ + +  M  +++ ++T     V     C ++  YAR +    A+ 
Sbjct: 45  HSLRSYDLLITKLARAKMFPQMEQILHQLQTLTQFPVPEPLLCRVIISYARARLPSRALR 104

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGW 210
           TF  +  +  T  L +FN LL AL   ++      +   ++      PD+ TY+IL+   
Sbjct: 105 TFLSIPSFRCTPTLKSFNSLLHALLLCRDFPSLPRLLPRLRHFSASGPDACTYNILIRAC 164

Query: 211 GKDPN-LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD--EALGIVKSMDSTV-C 266
             + N L  AR++F EM+  G  P  VT+G ++++LCK   ++  EA  + + M+     
Sbjct: 165 SLNNNDLAHARKLFDEMLTLGVRPTQVTFGTLINMLCKDPHLNLREAFSVKEDMERVFKL 224

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P  F+Y+ L+         + A     EM +N +  DV +YN L  A  KA K    YR
Sbjct: 225 KPNVFVYTNLIKAVCEVGDFDCAFRLKDEMVRNNLRLDVVVYNTLTSAVFKAGKKGLGYR 284

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +L++M S GV P++ TCN+++      G   EAYRV    ++  + D   Y ++I   C+
Sbjct: 285 ILEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVEGVKPDVFGYNVVIGWLCK 344

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+  +A  +++ M  ++ +P + T+  + +GLC      ++ ++LE+M+ KG  P   +
Sbjct: 345 EGKWREADDLFRDMPRRQCVPDVVTYRTVFDGLCQWMQFEEAGLVLEEMVFKGYVPCSSS 404

Query: 447 FGKLRKLLIKEGREDVL 463
             +    L +EG  ++L
Sbjct: 405 LNEFVGRLCQEGDFELL 421



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 111/274 (40%), Gaps = 37/274 (13%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  +++    V   + A    + M +  +  ++  +N L SA+ K+        I 
Sbjct: 227 NVFVYTNLIKAVCEVGDFDCAFRLKDEMVRNNLRLDVVVYNTLTSAVFKAGKKGLGYRIL 286

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + MK   + PD+ T ++L+  + ++ NL  A  +  + V+ G  PD+  Y +++  LCK 
Sbjct: 287 EEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVE-GVKPDVFGYNVVIGWLCKE 345

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+  E                                   A D F +M +   + DV  Y
Sbjct: 346 GKWRE-----------------------------------ADDLFRDMPRRQCVPDVVTY 370

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             +    C+  +F+    VL++M  KG  P S + N  +  L   G+ +   +V   +  
Sbjct: 371 RTVFDGLCQWMQFEEAGLVLEEMVFKGYVPCSSSLNEFVGRLCQEGDFELLGKVLSGLGG 430

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
               + + +  ++ + C+  +L  AF++   + L
Sbjct: 431 GFFCNENVWKTVVSLVCKSEKLSGAFELLDALVL 464


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 181/352 (51%), Gaps = 3/352 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I  L K+ Q      L+  +  K +  NV  +  I+    +V+ V EA   ++ M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
              G++ ++  +N L+S  C    ++ A ++F+ M  +   P+  T++IL++G+ K+  L
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRL 298

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +   M+  G  PD+ TY  ++D  C    V++A  I  ++      P    YS++
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIM 358

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H +    ++++A++ F EM  N I+ DV  YN+LI   CK  K     +++ +M+ +GV
Sbjct: 359 IHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 418

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
             +  T N IL+ L    + D+A  +  +M  +  + D  TYT ++   C+ G LE A  
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARI 478

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           V++ + +K +I  ++ ++ +I G C  G+  +S  LL  M E G  P+  T+
Sbjct: 479 VFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTY 530



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 177/350 (50%), Gaps = 3/350 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y+++I+S+ K++     +DL + M +K +  +V T+  ++  +  V K+++A  
Sbjct: 209 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD 268

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
            FN M    +  N+  FN L+   CK + +++A+ +   M  + I PD  TY+ L++ + 
Sbjct: 269 LFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYC 328

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               + +A+ IF  +   G NP+I +Y IM+   CK  +VDEA+ + K M      P   
Sbjct: 329 LVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVV 388

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+       +I  A+    EM   G+  D   YN+++ A CK ++      +L  M
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGEL 390
             +G+ P+  T   +++GL   G  ++A  VF  + +K    D + YT MI+ FC  G  
Sbjct: 449 KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +++  +   M+    IP+  T+ ++I  L DK     +  LL +MI +G+
Sbjct: 509 DESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 4/280 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVE 148
           +N   +V  ++ +++   K R+ +   +++ AM  K+ +  +V T+  +M +Y  V++V 
Sbjct: 276 ENINPNVYTFNILVDGFCKERRLKEAKNVL-AMMMKQGIKPDVFTYNSLMDRYCLVKEVN 334

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILL 207
           +A + FN + + GV  N+ +++ ++   CK K V +A  +F  M  +  IPD  TY+ L+
Sbjct: 335 KAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLI 394

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K   +  A ++  EM D G   D +TY  ++D LCK  +VD+A+ ++  M     +
Sbjct: 395 DGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 454

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ LV       R+EDA   F ++   G + DV +Y A+I  FC    F     +
Sbjct: 455 PDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDL 514

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           L  M   G  PN+ T  II+  L  + E D+A ++ R MI
Sbjct: 515 LSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMI 554



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 168/355 (47%), Gaps = 8/355 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T   +++      ++ +A+   + +   G   N  ++  L++ LCK      A ++ 
Sbjct: 141 NVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLL 200

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +  + + P+   Y+ +++   K   +  A +++ EMV  G +PD+VTY  ++   C  
Sbjct: 201 RRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIV 260

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ +A  +   M      P  + +++LV  +  E R+++A +    M K GI  DV  Y
Sbjct: 261 GKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTY 320

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N+L+  +C   +      +   ++ +GV PN  + +I+++G     + DEA  +F+ M  
Sbjct: 321 NSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM-- 378

Query: 369 LCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            C     D  TY  +I   C+ G++  A K+   M  +       T++ +++ LC    V
Sbjct: 379 HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 438

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
             +  LL  M ++GI+P   T+  L   L K GR +  + + E  +LLVK  + D
Sbjct: 439 DKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFE--DLLVKGYILD 491



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 178/390 (45%), Gaps = 3/390 (0%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
           F     Q+N + S+  +  ++ SL K   Y  +  L   M    +  ++    I++  ++
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSK 201
           ++ +   +      + K G   N+     L+  LC    + +A +  D  +   F  +  
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           +Y  L+ G  K      A ++ R +      P++V Y  ++D +CK   V+EA  +   M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            S    P    Y+ L+  + +  +++DA D F +M    I  +V  +N L+  FCK  + 
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRL 298

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           K    VL  M  +G+ P+  T N +++      E ++A  +F  + +     +  +Y++M
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIM 358

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I  FC+  ++++A  ++K M     IP + T++ LI+GLC  G +S +  L+++M ++G+
Sbjct: 359 IHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 418

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
                T+  +   L K  + D    L  KM
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKM 448



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 2/190 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q+    ++ +Y  MI    KI++     +L   M    ++ +V T+  ++    ++ K+ 
Sbjct: 345 QRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKIS 404

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   + M   GV  +   +N +L ALCK+  V KA  +   MKD  I PD  TY+ L+
Sbjct: 405 YALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLV 464

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K+  L  AR +F +++  G   D+  Y  M+   C  G  DE+L ++  M+   C 
Sbjct: 465 DGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI 524

Query: 268 PTSFIYSVLV 277
           P +  Y +++
Sbjct: 525 PNAVTYEIII 534


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 179/334 (53%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+ +I++   ++ +++ AV TF  M       ++  ++ L++ LCK + V +A  + 
Sbjct: 173 NLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLL 232

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M+ +  +P+  T+++L++   K+ +L RA ++   M   GC P+ VTY  ++  LC  
Sbjct: 233 DEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLK 292

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++D+AL +++ M S+ C P    Y  +++    + R ED V   + ME+ G  A+  +Y
Sbjct: 293 GKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIY 352

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           ++LI    K  K +N  R+ K+M  KG  PN       ++GL    + DEA  + + M+ 
Sbjct: 353 SSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS 412

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    +A TY+ ++K F + G+ +KA  VWK M  +    ++   SVL+NGLC+ G + +
Sbjct: 413 KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE 472

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +  +   M+ +G++P    +  + K L   G  D
Sbjct: 473 ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVD 506



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 182/392 (46%), Gaps = 7/392 (1%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVE 132
           +N  +++   FK   +  +Y+     ++ +IE+ A  R++  +  +++ M R  R+L   
Sbjct: 42  QNELSISPQIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTET 101

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSALCKSKNVRKA----QE 187
            F +I +   +     EAV  F+ M       Q + +FN +L+ + +  +   A      
Sbjct: 102 IFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLH 161

Query: 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +F      F P+  TY+++++   K   + RA + FREM    CNPD+ TY  +++ LCK
Sbjct: 162 VFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCK 221

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             RVDEA+ ++  M +  C P    ++VL+        +  A      M   G + +   
Sbjct: 222 ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVT 281

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI   C   K      +L+ M S    PN  T   I+NGL+ +   ++   +   M 
Sbjct: 282 YNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME 341

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +  + A+   Y+ +I    + G+ E A ++WK M  K   P++  +   I+GLC      
Sbjct: 342 ERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPD 401

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           ++  +L++M+ KG  P+  T+  L K   K+G
Sbjct: 402 EAEDILQEMLSKGFLPNAFTYSSLMKGFFKKG 433



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 169/395 (42%), Gaps = 39/395 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
            ++ +I++L+K         LV+ M  K  +  E T+  ++       K+++A+     M
Sbjct: 246 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 305

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
                  N   +  +++ L K +       I   M++R    +   YS L+ G  K+   
Sbjct: 306 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 365

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +++EM + GC P++V YG  +D LC+  + DEA  I++ M S    P +F YS L
Sbjct: 366 ENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSL 425

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +  +   + A+  + EM    +  +V   + L+   C++ + +    V   M  +G+
Sbjct: 426 MKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGL 485

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-----ADADTYTMMIKMFCQGGELE 391
            P+    + ++ GL   G  D+  ++F  M   C+      D  TY ++    C+   L 
Sbjct: 486 KPDVVAYSSMIKGLCDVGSVDKGLKLFYEM--QCQEPKSRPDVVTYNILFNALCRQDNLT 543

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS--CVLLEDMIEKGIRPSGETFGK 449
           +A                     L+N + D+G   DS  C +  + + + I P  +  G+
Sbjct: 544 RAID-------------------LLNSMLDEGCDPDSLTCNIFLETLRERINPPQD--GR 582

Query: 450 L------RKLLIKEGREDVLKFLQEK-MNLLVKEP 477
           L       +LL +E +   L+ ++E  +  L  EP
Sbjct: 583 LFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEP 617



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEME-----KNGILADVAMYNALI--GAFCKANKF 321
           T  I+ ++    G  +   +AV+ F  M      K  + +  ++ N +I  G F  A KF
Sbjct: 99  TETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKF 158

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMM 380
              Y  +   NSKG  PN  T N+I+  L   G+ D A   FR M +K C  D  TY+ +
Sbjct: 159 ---YLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTL 215

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +   C+   +++A  +   M+ +  +P+  TF+VLI+ L   G +S +  L+++M  KG 
Sbjct: 216 MNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGC 275

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P+  T+  L   L  +G+ D    L EKM
Sbjct: 276 VPNEVTYNTLIHGLCLKGKLDKALSLLEKM 305


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 181/378 (47%), Gaps = 10/378 (2%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           R + S++  L++     +   L   M           T+  ++R   R   +  A+   +
Sbjct: 118 RPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLS 177

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
           +M + G   +   FN L+   C++  V  A+++FD M  R F  D  +Y+ L+EG  +  
Sbjct: 178 LMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAG 237

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F EM      PD+  Y  +V  LC A R +E L +++ M     RP++  Y+
Sbjct: 238 RIDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYA 293

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            +V     E + ++A +   EM + G+   V    A+I A+CK  +  +  RVL+ M  +
Sbjct: 294 AVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLR 353

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEK 392
           G  PN  T N ++ G    G+  +A  +  +M + C    DA TY ++I+  C  G +E 
Sbjct: 354 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM-RACGVNPDAVTYNLLIRGQCIDGHIES 412

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF++ + M+    I   +T++ LIN LC  G    +C L + +  +GI+P+  TF  L  
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 472

Query: 453 LLIKEGREDVLKFLQEKM 470
            L K G+ D+     EKM
Sbjct: 473 GLCKSGKADIAWKFLEKM 490



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 183/411 (44%), Gaps = 24/411 (5%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML------- 129
             LA   F    +      +   Y+++I SL +        DL  A+R   ++       
Sbjct: 133 APLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRA------DLARALRYLSLMVRSGWRP 186

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  TF  ++  Y R  +V+ A   F+ M   G  Q++ ++  L+  LC++  + +A E+F
Sbjct: 187 DAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELF 246

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRARE---IFREMVDTGCNPDIVTYGIMVDVLC 246
             M     PD   Y+ L++G     N  R  E   + R M + G  P    Y  +VD  C
Sbjct: 247 GEMDQ---PDMHMYAALVKGLC---NAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRC 300

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           +  +  EA  +++ M      P     + +++ Y  E R+ DA+     M+  G   +V 
Sbjct: 301 RERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVW 360

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YNAL+  FC   K      +L  M + GV P++ T N+++ G    G  + A+R+ R M
Sbjct: 361 TYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM 420

Query: 367 -IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                 AD  TY  +I   C+ G  ++A  ++  ++ +   P+  TF+ LINGLC  G  
Sbjct: 421 EGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKA 480

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKMNLLVK 475
             +   LE M+  G  P   T+    + L K +G ++ L F+ E +   VK
Sbjct: 481 DIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 531



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 178/390 (45%), Gaps = 17/390 (4%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +   V +Y ++IE L +  +     +L   M    M     +  +++     ++ EE 
Sbjct: 217 RGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDM---HMYAALVKGLCNAERGEEG 273

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +     M++ G   +  A+  ++   C+ +  ++A+E+   M ++   P   T + ++  
Sbjct: 274 LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 333

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K+  +  A  +   M   GC P++ TY  +V   C  G+V +A+ ++  M +    P 
Sbjct: 334 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPD 393

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           +  Y++L+    ++  IE A      ME +G++AD   YNALI A CK  +      +  
Sbjct: 394 AVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFD 453

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            + ++G+ PN+ T N ++NGL   G+ D A++   +M+   C  D  TY+  I+  C+  
Sbjct: 454 SLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMK 513

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLEDMIEKGIRPSGE 445
             ++       M  K   PS   ++++I+ L  +   G+V+ +     +M+  G  P   
Sbjct: 514 GSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART---WGEMVSSGCNPDVV 570

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           T+    +    EGR      L E  N+L++
Sbjct: 571 TYTTSMRAYCIEGR------LNEAENVLME 594



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 167/384 (43%), Gaps = 20/384 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++++      +      L+N MR   +  +  T+ +++R       +E A    
Sbjct: 358 NVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL 417

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            +M+  G+  +   +N L++ALCK     +A  +FD ++ R I P++ T++ L+ G  K 
Sbjct: 418 RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKS 477

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A +   +MV  GC PD  TY   ++ LCK     E L  +  M     +P++  Y
Sbjct: 478 GKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNY 537

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++H    E        T+ EM  +G   DV  Y   + A+C   +      VL +M+ 
Sbjct: 538 TIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSK 597

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFC------- 385
            GV  ++   N +++G    G+TD A  + ++M  +       TY ++++          
Sbjct: 598 NGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVED 657

Query: 386 ----------QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                     +  EL   F ++  MK   F+P+  T+S ++ G  + G   ++  L+  M
Sbjct: 658 VLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLM 717

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR 459
            E  I  + + +  L     K  R
Sbjct: 718 KEDSISLNEDIYTALVTCFCKSKR 741



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 149/377 (39%), Gaps = 59/377 (15%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S IE L K++  Q     +  M  K +  +   + I++ K  + +       T+  M 
Sbjct: 502 YSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMV 561

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G   ++  +   + A C    + +A+ +  +  K+    D+  Y+ L++G        
Sbjct: 562 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTD 621

Query: 218 RAREIFREMVDTGCNPDIVTYGIMV----------DVL-------CKAGRVDEALGIVKS 260
            A  I ++M      P+  TY I++          DVL        KA  + +  G+   
Sbjct: 622 HAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDV 681

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M      P S  YS ++  +  + R E+A      M+++ I  +  +Y AL+  FCK+ +
Sbjct: 682 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 741

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380
           + + + ++  M   G  P   +   +L+GLI  G+TD+A  +F                 
Sbjct: 742 YLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMN--------------- 786

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG---IVSDSCVLLEDMIE 437
                               + K + P    + V+I+GL  KG   I  +  ++LE M  
Sbjct: 787 -------------------SRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERM-- 825

Query: 438 KGIRPSGETFGKLRKLL 454
              RPS +T+  L + L
Sbjct: 826 -NCRPSHQTYAMLTEEL 841


>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
          Length = 680

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 206/426 (48%), Gaps = 7/426 (1%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           K  +  +L   GI +S +IV DVL +   +G     FF WA ++      V +Y  ++ +
Sbjct: 101 KSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRA 160

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L + + +  M D++  M  + +  ++E   I M  + RV  V  A+  F   + +GV  +
Sbjct: 161 LGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCS 220

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +FN LL  LC+  +V  A+ +F+  K     DS +Y+I++ GW K   +    ++ +E
Sbjct: 221 TESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKE 280

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV++G  PD ++Y  +++ L + GR+++++ I  ++      P + +Y+ ++  +     
Sbjct: 281 MVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARD 340

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++++  +  M       ++  Y+ L+    K  K  +   + ++M S+GV P +     
Sbjct: 341 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTS 400

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            L  L   G    A  ++++  K  C      Y +++K   + G+      VW  M+   
Sbjct: 401 FLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESG 460

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL---RKLL--IKEGR 459
           +   +  +  +++GLC  G + ++ +++E+ + KG  P+   + +L   RK     ++G+
Sbjct: 461 YPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSIIRKWQQKFRKGK 520

Query: 460 EDVLKF 465
           E++ K+
Sbjct: 521 EEMEKW 526


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 186/416 (44%), Gaps = 47/416 (11%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++ +   V  Y+++I+SL K    +    L   M ++  + NV T+ +++    +V +++
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRID 124

Query: 149 EAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTY 203
           EA      M +    V  N+  +N  L  LCK     +A E+   ++D   R  PD+ T+
Sbjct: 125 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 184

Query: 204 SILLEGW-------------------GKDPN----------------LPRAREIFREMVD 228
           S L++G                    G  PN                + RA  +   MVD
Sbjct: 185 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 244

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI-----YSVLVHTYGVE 283
            G  PD++TY ++VD  CKA RVDEAL ++  M S  C P   +     +++L+      
Sbjct: 245 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKA 304

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
              E A   F EM    +  DV  + ALI   CKA + +    +L  M + GV PN  T 
Sbjct: 305 GNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTY 364

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N +++GL   G  +EA +    M+   C  D+ TY  ++   C+    + A ++   +K 
Sbjct: 365 NALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKS 424

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
             + P   T+++L++GL   G    +  +LE+M+ KG +P   TF      L + G
Sbjct: 425 FGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSG 480



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 192/415 (46%), Gaps = 15/415 (3%)

Query: 69  VLEKFRNAGTLAFCF--FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           VL+    AG  A     F+    +     ++  Y+++I  L K        +L   +  +
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVER 66

Query: 127 -RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
               +V T+  ++    +   +EEA      M   G   N+  ++ L++ LCK   + +A
Sbjct: 67  GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEA 126

Query: 186 QEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGI 240
           +E+   M  +    +P+  TY+  L+G  K      A E+ R + D     +PD VT+  
Sbjct: 127 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 186

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           ++D LCK G++DEA  +   M +    P    Y+ LV+     +++E A      M   G
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 246

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-----SRTCNIILNGLIGRGE 355
           +  DV  Y+ L+ AFCKA++      +L  M S+G  PN       T NI++ G    G 
Sbjct: 247 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGN 306

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            ++A  +F  M+ K  + D  T+  +I   C+ G++E A  +   M      P++ T++ 
Sbjct: 307 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 366

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           L++GLC  G + ++C  LE+M+  G  P   T+G L   L +  R +D L+ + E
Sbjct: 367 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 421



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 167/336 (49%), Gaps = 8/336 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + ++I+ L K  Q      + + M     + NV T+  ++    +  K+E A      M 
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 243

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR------FIPDSKTYSILLEGWGK 212
             GVT ++  ++ L+ A CK+  V +A E+   M  R       +PD  T++IL+ G  K
Sbjct: 244 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACK 303

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             N  +A  +F EMV     PD++T+G ++D LCKAG+V+ A  I+  M +    P    
Sbjct: 304 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 363

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ LVH      RIE+A     EM  +G + D   Y +L+ A C+A++  +  +++ ++ 
Sbjct: 364 YNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELK 423

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
           S G  P++ T NI+++GL   G+T++A  V   M+ K  + D+ T+        + G L 
Sbjct: 424 SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLA 483

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              ++ + +  K  +P   T S +++ +C  G + D
Sbjct: 484 GTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDD 519



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 172/359 (47%), Gaps = 47/359 (13%)

Query: 166 LAAFNGLLSALCKSKNVRKAQEIF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
           +A +N +L +LC++ +  +A EIF  +  +D   P   TY+ ++ G  K  +L    E+F
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            E+V+ G +PD+VTY  ++D LCKAG ++EA  +   M S  C P    YSVL++     
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 284 NRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDM--NSKGVAPN 339
            RI++A +   EM +    +L ++  YN+ +   CK +       +++ +   S  V+P+
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPD 180

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEA----------- 372
           + T + +++GL   G+ DEA  VF  MI                 LC+A           
Sbjct: 181 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 373 ---------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-----FIPSMHTFSVLING 418
                    D  TY++++  FC+   +++A ++   M  +       +P   TF++LI G
Sbjct: 241 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAG 300

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            C  G    +  L E+M+ K ++P   TFG L   L K G+ +  + + + M  L   P
Sbjct: 301 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 117/276 (42%), Gaps = 42/276 (15%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR------MLNVETFCIIMRKYARVQKVEEA 150
           V  Y  ++++  K  +     +L++ M ++       + +  TF I++    +    E+A
Sbjct: 251 VITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQA 310

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEG 209
              F  M    +  ++  F  L+  LCK+  V  A++I D M +  +P +  TY+ L+ G
Sbjct: 311 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 370

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K   +  A +   EMV +GC PD +TYG +V  LC+A R D+AL +V  + S    P 
Sbjct: 371 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 430

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEME-------------------------------- 297
           +  Y++LV       + E A+    EM                                 
Sbjct: 431 TVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLR 490

Query: 298 ---KNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
                G+L D    ++++   C++ K  +V  ++K+
Sbjct: 491 VVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           +N +  V  + ++I+ L K  Q +   D+++ M    +  NV T+  ++    +  ++EE
Sbjct: 320 KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEE 379

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLE 208
           A      M   G   +   +  L+ ALC++     A ++   +K   + PD+ TY+IL++
Sbjct: 380 ACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD 439

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM------- 261
           G  K     +A  +  EMV  G  PD  T+      L ++G +   + +++ +       
Sbjct: 440 GLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLP 499

Query: 262 DSTVC 266
           D+T C
Sbjct: 500 DATTC 504


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 200/399 (50%), Gaps = 7/399 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           +A  FF WA++Q  Y H    Y+++++ L+K +  Q    ++  M  + + L+ E F  +
Sbjct: 178 VALNFFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCV 237

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           M  Y+R  K+  A+    +MQK GV  NL+  N  +  L K   + KA    + M+   I
Sbjct: 238 MVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGI 297

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD  TY+ L++G+     +  A E+   +   GC PD V+Y  ++  LCK  ++++   
Sbjct: 298 KPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKC 357

Query: 257 IVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           +++ M  DS +  P    Y+ L+H        +DA+    E E  G   D   Y+A++ +
Sbjct: 358 LMEKMVQDSNLI-PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHS 416

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           FC+  +      ++ DM S+   P+  T   I++G    G  DEA ++ ++M K  C+ +
Sbjct: 417 FCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPN 476

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             +YT ++   C  G+  +A ++    +   + P+  T+ V+++G   +G +S++C L  
Sbjct: 477 TVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTR 536

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           +M+EKG  P+      L + L +  +  +  K+L+E +N
Sbjct: 537 EMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLN 575



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 170/381 (44%), Gaps = 4/381 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  F K AE +  +   V  Y +++ S  +  +      LV  M ++    +V T+  I+
Sbjct: 391 ALAFLKEAEDKGFHIDKV-GYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIV 449

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-I 197
             + R+ +++EA      M K+G   N  ++  LL+ LC S    +A+E+ +  ++ +  
Sbjct: 450 DGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWT 509

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ TY +++ G+ ++  L  A ++ REMV+ G  P  V   +++  LC+  +V EA   
Sbjct: 510 PNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKY 569

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++   +  C      ++ ++H +     +E A+    +M  +    D   Y AL  A  K
Sbjct: 570 LEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGK 629

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
             +      ++  M SKG+ P   T   +++     G  D+   +  RM+K  +     Y
Sbjct: 630 KGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKR-KPFRTIY 688

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             +I+  C  G LE+A K+   +         +T  VL+     KG+   +  +   M  
Sbjct: 689 NHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFR 748

Query: 438 KGIRPSGETFGKLRKLLIKEG 458
           + + P  +   K+ K L+ +G
Sbjct: 749 RNLTPDLKLCEKVTKKLVLDG 769



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 43/320 (13%)

Query: 90  QQNYEHSVR----AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARV 144
           QQ Y+H  +    +Y +++  L    +     +++N         N  T+ ++M  + R 
Sbjct: 466 QQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRRE 525

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTY 203
            K+ EA      M + G        N L+ +LC+++ V +A++  + C+      +   +
Sbjct: 526 GKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNF 585

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + ++ G+ +  ++  A  +  +M  +  +PD VTY  + D L K GR+DEA  ++  M S
Sbjct: 586 TTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLS 645

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               PT   +  ++H Y    R++D ++    M K      +  YN +I   C     + 
Sbjct: 646 KGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRKPFRTI--YNHVIEKLCDFGNLEE 703

Query: 324 VYRVLK---------DMNS----------KGVA----------------PNSRTCNIILN 348
             ++L          D N+          KGVA                P+ + C  +  
Sbjct: 704 AEKLLGKVLRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPDLKLCEKVTK 763

Query: 349 GLIGRGETDEAYRVFRRMIK 368
            L+  G   EA ++  R ++
Sbjct: 764 KLVLDGNLVEADKLMLRFVE 783


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 197/388 (50%), Gaps = 4/388 (1%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           W   + +   +++A + +++ L K  ++  MW +   M  +    NV T+  ++    R 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQ 206

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTY 203
               +A   F+ M +  +   +  +  L+  LC    + +A+ +F  M++   +P+  TY
Sbjct: 207 GDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTY 266

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + +++G+ K  ++ +A E+++EM+  G  P++VT+GI++D LCK   +  A   +  M S
Sbjct: 267 NTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P  F+Y+ L+  Y     + +A+    E+EK+ IL DV  Y+ LI   C  ++ + 
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
              +L++M  KG  PN+ T N +++G    G  ++A  V  +M  K  E +  T++ +I 
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +C+ G++E A  ++  M +K  +P +  ++ LI+G    G   ++  L ++M E G+ P
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506

Query: 443 SGETFGKLRKLLIKEGR-EDVLKFLQEK 469
           +  T   L   L K+GR  D +K    K
Sbjct: 507 NVFTLSCLIDGLCKDGRISDAIKLFLAK 534



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 177/402 (44%), Gaps = 31/402 (7%)

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           E +    RN+G L                ++  Y++M++   KI   +   +L   M   
Sbjct: 248 ESMFRTMRNSGMLP---------------NLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 127 RML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
            +L NV TF I++    +  ++  A      M  +GV  N+  +N L+   CK+ N+ +A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 186 QEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
             +  +  K   +PD  TYSIL++G      +  A  + +EM   G  P+ VTY  ++D 
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
            CK G +++A+ +   M      P    +S L+  Y    ++E A+  + EM   G+L D
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  Y ALI    K    K  +R+ K+M   G+ PN  T + +++GL   G   +A ++F 
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 365 RMI--------------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                             LC  +   YT +I+  C  G + KA K +  M+     P + 
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVF 592

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           T  V+I G      + D  +L  D+++ GI P+   +  L K
Sbjct: 593 TCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAK 634



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 191/415 (46%), Gaps = 27/415 (6%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKR-------M 128
           A   F    ++ +   + + Y ++I  L   + Y     +M DL+  ++  R       +
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 129 LNV-----------ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
            NV             F +++  ++ +  VEEA++ +  M    V   + A N +L  L 
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLV 169

Query: 178 KSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K        +++  M  R   P+  TY  L++G  +  +  +A  +F EM++    P +V
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y I++  LC   R+ EA  + ++M ++   P  + Y+ ++  Y     ++ A++ + EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
             +G+L +V  +  LI   CK ++  +  + L DM S GV PN    N +++G    G  
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA  +   + K     D  TY+++IK  C    +E+A  + + MK K F+P+  T++ L
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTL 409

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I+G C +G +  +  +   M EKGI P+  TF  L     K G+ +    L  +M
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 153/336 (45%), Gaps = 18/336 (5%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAY 100
           M+S+ K ++D A    G+  +  +   +++ +  AG L+      +E ++      V  Y
Sbjct: 314 MVSARKFLIDMA--SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTY 371

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
             +I+ L  + + +    L+  M+ K  L N  T+  ++  Y +   +E+A+   + M +
Sbjct: 372 SILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPR 218
            G+  N+  F+ L+   CK+  +  A  ++  M  +  +PD   Y+ L++G  KD N   
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI-------------VKSMDSTV 265
           A  + +EM + G +P++ T   ++D LCK GR+ +A+ +                +D ++
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL 551

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P   +Y+ L+     + RI  A   F +M  +G+  DV     +I    +A   ++V 
Sbjct: 552 CSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVM 611

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            +  D+   G+ PNS    ++  G    G    A R
Sbjct: 612 MLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALR 647


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 190/371 (51%), Gaps = 14/371 (3%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETF 134
           LA  FF WA +Q  Y+H V +Y+ +++ L K     R  ++  DL+++  +    N+ TF
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSP---NLVTF 65

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK- 193
            I++R   +  +   A+     + ++ V  ++  FN L+  L K  N  +A ++F+ M+ 
Sbjct: 66  KILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMES 125

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRV 251
            R  P+  TY+ ++ G  K  NL +ARE+  EM+  G    PDIVTY  +++   +A R+
Sbjct: 126 SRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRI 185

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA    + M +    P     ++LV     +  +E+A++    M+  G + DV  YN++
Sbjct: 186 REACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSI 245

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I A C A K      +LK M+    +P+  T N +L+G    G    A  V   M +   
Sbjct: 246 IHALCVAGKVVEAAEILKTMSC---SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENI 302

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TYT+++   C+ G+++ AF + + +  + +IP +  ++ L++GLC  G + ++  
Sbjct: 303 LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHK 362

Query: 431 LLEDMIEKGIR 441
           L+++M  +G R
Sbjct: 363 LVKEMSVRGCR 373



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 190/410 (46%), Gaps = 9/410 (2%)

Query: 56  QSGIRVSPEIV--EDVLEKFRNAGTL-AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           + G + +P+IV    ++  F  A  +   C F+   K       V   + ++  + K   
Sbjct: 160 RKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGD 219

Query: 113 YQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +   ++++ M+    + +V T+  I+       KV EA     +++    + +L  FN 
Sbjct: 220 VEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAA---EILKTMSCSPDLVTFNT 276

Query: 172 LLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LL   CK+  + +A E+ + M ++  +PD  TY+IL+ G  +   +  A  +  E+V  G
Sbjct: 277 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 336

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD++ Y  +VD LCK+G ++EA  +VK M    CR    +YS LV  Y     +  A 
Sbjct: 337 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAR 396

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           +   EM    ++  +  YN ++G   K         ++ D+ ++G  P+  T N +++GL
Sbjct: 397 EILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 456

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                  EA  +   M  + C  +  T   ++   C+ G ++ A+ +   M  KR  P++
Sbjct: 457 CKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNV 516

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             ++ LI+GLC    + D+C++L+ M  +G+      + KL   +   GR
Sbjct: 517 VVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGR 566



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 3/333 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T  I++    +   VEEA+   + M+  G   ++  +N ++ ALC +  V +A EI 
Sbjct: 203 DVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEIL 262

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             M     PD  T++ LL+G+ K   LPRA E+  EM      PD++TY I+V+ LC+ G
Sbjct: 263 KTMSCS--PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 320

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +V  A  +++ +      P    Y+ LV        IE+A     EM   G    V MY+
Sbjct: 321 QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYS 380

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
           +L+  +C+A        +L +M S  + P   T NI+L GLI  G   +A  +   ++ +
Sbjct: 381 SLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVAR 440

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               D  TY  +I   C+   + +A  +   M  +   P+  T   ++ GLC  G V D+
Sbjct: 441 GYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDA 500

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             L+ +M  K   P+   +  L   L K  R D
Sbjct: 501 WSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 533



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 158/318 (49%), Gaps = 9/318 (2%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
           ++ G   ++ ++N LL  L KS +  +  +++ D +     P+  T+ IL+ G  K    
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA E  R + +    PD+  + +++  L K G  D+A+ + ++M+S+  +P    Y+ +
Sbjct: 79  MRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTV 138

Query: 277 VHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +        +E A +   EM + G     D+  YN LI AF +A++ +      + M + 
Sbjct: 139 ISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAA 198

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEK 392
           G+ P+  TCNI+++G+   G+ +EA  +   M KL     D  TY  +I   C  G++ +
Sbjct: 199 GINPDVLTCNILVSGICKDGDVEEALEILDGM-KLAGPVPDVITYNSIIHALCVAGKVVE 257

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++ K M      P + TF+ L++G C  G++  +  +LE+M  + I P   T+  L  
Sbjct: 258 AAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVN 314

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G+  V  +L E++
Sbjct: 315 GLCRVGQVQVAFYLLEEI 332



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 146/311 (46%), Gaps = 5/311 (1%)

Query: 62  SPEIV--EDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           SP++V    +L+ F  AG L        E  ++N    V  Y  ++  L ++ Q Q+ + 
Sbjct: 268 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 327

Query: 119 LVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           L+  + R   + +V  +  ++    +  ++EEA      M   G    +  ++ L+S  C
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 178 KSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           ++ NV KA+EI   M     +P   TY+I+L G  KD ++ +A  +  ++V  G  PD+V
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  ++D LCKA RV EA  +   M S  C P       +V       R++DA    +EM
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 507

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            +     +V +Y +LI   CK+++  +   VL  M  +GVA +      ++  +   G  
Sbjct: 508 SRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRV 567

Query: 357 DEAYRVFRRMI 367
            EA  ++  M+
Sbjct: 568 AEAMAMYDEMV 578



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 3/269 (1%)

Query: 77  GTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETF 134
           G +   F+   E  +Q Y   V AY S+++ L K  + +    LV  M  +     V  +
Sbjct: 320 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMY 379

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMK 193
             ++  Y R   V +A      M    +   L  +N +L  L K  ++ KA   I D + 
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
             ++PD  TY+ L++G  K   +  A ++  EM   GC P+ VT G +V  LC+ GRVD+
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDD 499

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  +V  M      P   +Y+ L+      +R++DA      M   G+  D   Y  LI 
Sbjct: 500 AWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIV 559

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           +     +      +  +M ++G  P+  T
Sbjct: 560 SMSHGGRVAEAMAMYDEMVARGFLPDGST 588


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 209/477 (43%), Gaps = 40/477 (8%)

Query: 34  AAKSISKIMLSSPKVVLDTA-LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           AAK   +++ SS    L +  L + G  + P +V  VL++  +    A  FF W   Q  
Sbjct: 69  AAKEFLRVLDSSEDFELASRRLCEFGGYLVPSVVGRVLQQLDDLDK-AVKFFDWCTGQPG 127

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
           Y+HS    + ++ +  + ++ Q  +DL    R      +  T+  ++  + + +  ++A 
Sbjct: 128 YKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAY 187

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211
              + M+K G+  + A +N ++  LC +  V  A   +  M+    P   TY+IL++   
Sbjct: 188 RLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALC 247

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   +  A  I  +M++ GC P++VTY  +++  CK G +DEA+ +   M    C P  F
Sbjct: 248 KSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 307

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL-------------------- 311
            Y++L+  Y  + R +D      EM K G   +   YN L                    
Sbjct: 308 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 367

Query: 312 ---------------IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
                          I  FCK  +    Y + + M  +G  P+  T NI+++G       
Sbjct: 368 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 427

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           D+A ++  RM +  C  D  TY  ++   C+  ++++A++V++ ++   +   + T S L
Sbjct: 428 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 487

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMN 471
           I+GLC    + D+  LL +M   G  P    +  L     K  + D  L F  E ++
Sbjct: 488 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLD 544



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 3/343 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++ MI+   K+ Q  + ++L   M  +  L ++ T+ I++    R  ++++A      M 
Sbjct: 379 FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMT 438

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           + G   ++  +N ++S LCK+  V +A E+++ +++  +  D  T S L++G  K   L 
Sbjct: 439 EAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLD 498

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++ REM   G  PD+V Y I++   CKA ++D++L     M    C PT   YS+++
Sbjct: 499 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVI 558

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  R+ D       M + G+  D  +Y ++I   CK++ +   Y + K M   G A
Sbjct: 559 DKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCA 618

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P   T N++++ L      DEA  +   M    C  D  TY  +   F +  E +KAF++
Sbjct: 619 PTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRL 678

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           ++ MK +   P+   +S+L+  L  +  +  +  + E+ +E G
Sbjct: 679 FQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 174/404 (43%), Gaps = 38/404 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I    K+        L N M       +V T+ I++  Y + ++ ++     
Sbjct: 270 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLL 329

Query: 155 NVMQKYGVTQNLAAFNGLLSAL-----------------------------------CKS 179
             M KYG   N   +N L+ +L                                   CK 
Sbjct: 330 QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKV 389

Query: 180 KNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             +  A E+F  M DR  +PD  TY+I++ G  +   +  AR++   M + GC PD+VTY
Sbjct: 390 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 449

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             +V  LCKA +VDEA  + + + +          S L+       R++DA     EME+
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
           NG   DV  Y  LI  FCKA++         +M  KG  P   T +I+++ L       +
Sbjct: 510 NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 569

Query: 359 AYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
              + + M+ +    DA  YT +I   C+    ++A++++K MK     P++ T++VL++
Sbjct: 570 GCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVD 629

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            LC    + ++  LLE M   G  P   T+  +     K    D
Sbjct: 630 KLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHD 673



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 63/337 (18%)

Query: 14  GCISFLRRYN---SSEPSTEALDAAKSISKIMLSS---PKVVLDTALDQSGIRVSPEIVE 67
           GC+  +  YN   S       +D A+ + + M  +   P VV   ++  SG+  + ++ E
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSI-VSGLCKASQVDE 464

Query: 68  --DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-R 124
             +V E  RN G               Y   V    ++I+ L K R+      L+  M R
Sbjct: 465 AYEVYEVLRNGG---------------YFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509

Query: 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
                +V  + I++  + +  ++++++  F+ M   G    +  ++ ++  LCKS  VR 
Sbjct: 510 NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 569

Query: 185 AQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
              +   M +R + PD+  Y+ +++G  K  +   A E+++ M  TGC P +VTY ++VD
Sbjct: 570 GCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVD 629

Query: 244 VLCKAGRVDEALGIVKSMDS------TV-----------------------------CRP 268
            LCK  R+DEA+ +++ M+S      TV                             C P
Sbjct: 630 KLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSP 689

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           T F+YS+L+     E +++ A++ + E  + G  ADV
Sbjct: 690 TPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG--ADV 724


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 206/399 (51%), Gaps = 7/399 (1%)

Query: 79  LAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCI 136
           LA   F +A K    + H+   YH++I  L++ R ++ +  L+  ++   +  + + F  
Sbjct: 67  LALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFIT 126

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R Y    + + A+ TF  +Q +GV +++ + N LL+AL ++        +F   K +F
Sbjct: 127 VIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKF 186

Query: 197 --IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             +P+  T +IL++   K  ++  AR++F EM   G  P++VTY  ++      G +  A
Sbjct: 187 GVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGA 246

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             +   +      P +  Y++L+  Y  + R  DAV    EME+NG+  +   Y  +I  
Sbjct: 247 KRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILG 306

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           +CK  K      +L DM  K   PNS  C  +++ L G G   EA +++ +++K  C  D
Sbjct: 307 YCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPD 366

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
               + +I   C+ G + +A K++   + +  I S+ T++ LI G+C+ G + ++  L +
Sbjct: 367 NAITSTLIHWLCKEGNIWEARKLFNEFE-RGTISSLLTYNTLIAGMCEMGELCEAARLWD 425

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           DM+EKG  P+  T+  L K  +K G+ ++V+K ++E ++
Sbjct: 426 DMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLD 464



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 200/445 (44%), Gaps = 19/445 (4%)

Query: 2   IKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRV 61
           ++++H   K      +F   Y++       L  A++        P   L   L  SGI  
Sbjct: 69  LQIFHYAGKYHP---AFTHNYDTYHAIIYRLSRARAFE------PVESLLLELQDSGINC 119

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           S ++   V+  +  A         +   Q      SVR+ ++++ +L +  ++  +  L 
Sbjct: 120 SEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLF 179

Query: 121 NAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
              ++K   + NV T  I+++   +   VE A   F+ M   G+  N+  +  +L     
Sbjct: 180 KYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVS 239

Query: 179 SKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
             ++  A+ +F  + D  ++PD+ TY+IL++G+ K      A ++  EM + G  P+ +T
Sbjct: 240 RGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDIT 299

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           YG+++   CK  +  EAL ++  M      P S +   ++     E R+++A   + ++ 
Sbjct: 300 YGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLL 359

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS--KGVAPNSRTCNIILNGLIGRGE 355
           K     D A+ + LI   CK     N++   K  N   +G   +  T N ++ G+   GE
Sbjct: 360 KKNCTPDNAITSTLIHWLCKEG---NIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGE 416

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA R++  M+ K C  +  TY M+IK F + G+ ++  KV + M  K  + +  T+ +
Sbjct: 417 LCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLI 476

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKG 439
           L+ GL   G   +   +L  +I  G
Sbjct: 477 LVEGLLKLGKREELLNILSMIISSG 501


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 146/279 (52%), Gaps = 7/279 (2%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY+ L+ G  K   L  ARE+  EM   GC P+++TY I++D  CK GR++EA  +
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M        +  Y+ L+     + +++DA++ F +M   G   D+  +N+LI   CK
Sbjct: 72  LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 131

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
            NKF+    + +DM  +GV  N+ T N +++  + RG   EA ++   M+ + C  D  T
Sbjct: 132 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 191

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +IK  C+ G +EK   +++ M  K   P+  + ++LINGLC  G +  +   L DMI
Sbjct: 192 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 251

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
            +G+ P   T+  L   L K GR       QE +NL  K
Sbjct: 252 HRGLTPDIVTYNSLINGLCKTGRA------QEALNLFDK 284



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 135/276 (48%), Gaps = 2/276 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E +V  Y  +I+   K  + +   ++++ M  K + LN   +  ++    + +KV++A+ 
Sbjct: 46  EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 105

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
            F  M   G   ++  FN L+  LCK     +A  ++ D + +  I ++ TY+ L+  + 
Sbjct: 106 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 165

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   +  A ++  +M+  GC  D +TY  ++  LC+AG +++ L + + M S    P + 
Sbjct: 166 RRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNI 225

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
             ++L++       I+ A++   +M   G+  D+  YN+LI   CK  + +    +   +
Sbjct: 226 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 285

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
             +G+ P++ T N +++     G  D+A+ +  R +
Sbjct: 286 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGV 321



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 2/215 (0%)

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           +SM S  C P  F Y+ L+     +  +  A +   EM+  G   +V  Y  LI  FCK 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTY 377
            + +    VL +M+ KG+A N+   N +++ L    +  +A  +F  M  K C+ D  T+
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             +I   C+  + E+A  +++ M L+  I +  T++ LI+    +G + ++  L+ DM+ 
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           +G      T+  L K L + G  E  L   ++ M+
Sbjct: 183 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 217


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 181/382 (47%), Gaps = 27/382 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--------NVETFCIIMRKYARVQKVEEA 150
            Y ++++ + K      M D V+A+   R +        NV  +  I+    +  +  +A
Sbjct: 214 TYGTIVDGMCK------MGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDA 267

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
              F+ MQ+ G++ NL  +N +++  C S    +AQ +   M +R + PD  T+S+L+  
Sbjct: 268 QNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINA 327

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K+     A E++ EM+  G  P+ +TY  M+D   K  R+D A  +   M +  C P 
Sbjct: 328 LVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPD 387

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              +S+L+  Y    R++D +    EM + G++A+   Y  LI  FC+         +L+
Sbjct: 388 VITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQ 447

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------CEADADTY 377
           +M S GV PN  TCN +L+GL   G+  +A  +F+ M K              E D  TY
Sbjct: 448 EMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTY 507

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I      G+  +A ++++ M  +  +P   T++ +I+GLC +  + ++  + + M  
Sbjct: 508 NILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGS 567

Query: 438 KGIRPSGETFGKLRKLLIKEGR 459
           KG  P   TF  L     K GR
Sbjct: 568 KGFSPDVVTFTTLINGYCKVGR 589



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 185/370 (50%), Gaps = 7/370 (1%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           ++  + ++ +  ++  L   M  +R+  N+ +F I+++ +    K+  A+ TF  + K G
Sbjct: 82  LLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLG 141

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
              +L  F+ LL  LC    V +A   F  +     P+   ++ L+ G  ++  +  A  
Sbjct: 142 FHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK---PNVIAFTTLMNGLCREGRVVEAVA 198

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIYSVLVHTY 280
           +   MV+ G  P+ +TYG +VD +CK G    AL +++ M+  +  +P   IYS ++   
Sbjct: 199 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGL 258

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             + R  DA + F EM++ GI  ++  YN +I  FC + ++    R+L++M  + ++P+ 
Sbjct: 259 WKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDV 318

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T ++++N L+  G+  EA  ++  M+ +    +  TY  MI  F +   L+ A +++  
Sbjct: 319 VTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYL 378

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M  K   P + TFS+LI+G C    V D   LL +M  +G+  +  T+  L     + G 
Sbjct: 379 MATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGN 438

Query: 460 ED-VLKFLQE 468
            +  L  LQE
Sbjct: 439 LNAALDLLQE 448



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 189/412 (45%), Gaps = 49/412 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A    +  E+    + +V  Y ++I+ L K  +     +L + M+ K +  N+ T+  ++
Sbjct: 231 ALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMI 290

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
             +    +  EA      M +  ++ ++  F+ L++AL K     +A+E+++ M  R  I
Sbjct: 291 NGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGII 350

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ TY+ +++G+ K   L  A  +F  M   GC+PD++T+ I++D  C A RVD+ + +
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 258 VKSMDSTVCRPTSFIYSVLVHTY-------------------GV---------------- 282
           +  M        +  Y+ L+H +                   GV                
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470

Query: 283 ENRIEDAVDTFLEMEK-----------NGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
             +++DA++ F  M+K           N +  DV  YN LI       KF     + ++M
Sbjct: 471 NGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEM 530

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGEL 390
             +G+ P++ T N +++GL  +   DEA ++F  M  K    D  T+T +I  +C+ G +
Sbjct: 531 PHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRV 590

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
               +V+  M  +  + +  T+  LI+G C  G ++ +  + ++MI  G+ P
Sbjct: 591 GDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYP 642



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 167/363 (46%), Gaps = 28/363 (7%)

Query: 85  KWAEKQQ--------NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFC 135
           +W+E Q+             V  +  +I +L K  ++    +L N M  + ++ N  T+ 
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            ++  +++  +++ A   F +M   G + ++  F+ L+   C +K V    ++   M  R
Sbjct: 358 SMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRR 417

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             + ++ TY+ L+ G+ +  NL  A ++ +EM+ +G  P++VT   ++D LC  G++ +A
Sbjct: 418 GLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDA 477

Query: 255 LGIVKSMDSTV-----------CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           L + K M  +              P    Y++L+     E +  +A + + EM   G++ 
Sbjct: 478 LEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVP 537

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D   YN++I   CK ++     ++   M SKG +P+  T   ++NG    G   +   VF
Sbjct: 538 DTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVF 597

Query: 364 ----RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
               RR I    A+A TY  +I  FCQ G +  A  +++ M      P   T   ++ GL
Sbjct: 598 CEMGRRGIV---ANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 654

Query: 420 CDK 422
             K
Sbjct: 655 WSK 657



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  ++  + ++  +  A+     M   GV  N+   N LL  LC +  ++ A E+F
Sbjct: 422 NTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMF 481

Query: 190 DCMKDRFI------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
             M+   +            PD +TY+IL+ G   +     A E++ EM   G  PD +T
Sbjct: 482 KVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTIT 541

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++D LCK  R+DEA  +  SM S    P    ++ L++ Y    R+ D ++ F EM 
Sbjct: 542 YNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMG 601

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + GI+A+   Y  LI  FC+         + ++M S GV P++ T   +L GL  + E  
Sbjct: 602 RRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELK 661

Query: 358 EAYR 361
            A +
Sbjct: 662 RAVQ 665



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 148/324 (45%), Gaps = 7/324 (2%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-D 199
           +  ++ +++A+  F  M +      +  F  LL  + + +       +   M+ R IP +
Sbjct: 51  FHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCN 110

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +++IL++ +     LP A   F ++   G +P +VT+  ++  LC   RV EAL    
Sbjct: 111 IYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFH 170

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
                +C+P    ++ L++    E R+ +AV     M ++G+  +   Y  ++   CK  
Sbjct: 171 Q----ICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 226

Query: 320 KFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              +   +L+ M     + PN    + I++GL   G   +A  +F  M  K    +  TY
Sbjct: 227 DTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTY 286

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             MI  FC  G   +A ++ + M  ++  P + TFSVLIN L  +G   ++  L  +M+ 
Sbjct: 287 NCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLP 346

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
           +GI P+  T+  +     K+ R D
Sbjct: 347 RGIIPNTITYNSMIDGFSKQNRLD 370


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 198/436 (45%), Gaps = 85/436 (19%)

Query: 67  EDVLEKFRN--AGTLAFCFFKWAEKQQNYEHSVRAYHSMI-------------------- 104
           +DV+    N  +  LA   FKWA +Q+++EH+V  Y++ +                    
Sbjct: 5   DDVIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDML 64

Query: 105 --ESLAKIRQYQIMW-------------DLVNAMRTKRMLNVETFCIIM----------- 138
             E L  I  Y I+              +L+  M +K ML   TF + M           
Sbjct: 65  YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESK-MLTPTTFIVNMLVSCLCKNGKV 123

Query: 139 ----RKYARVQ---------------------KVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
                 Y R+                      +++ A+  F  M++  V  +L  +NGLL
Sbjct: 124 DAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLL 183

Query: 174 SALCKSKNVRKAQEIFDCMKD-----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
              C++  + +A  + + M +       +PD  +Y+ ++ G+ K   LP AR + R M+ 
Sbjct: 184 YGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIK 243

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +GC+P++VT+  ++D LC  G++DEA  + + M    C PT+  Y+VL+  +    RI+ 
Sbjct: 244 SGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDK 303

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A D F++M + G+  +V  Y ALIG  C ANK ++   +LK M+S G  PN  T   ++ 
Sbjct: 304 ANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIG 363

Query: 349 GLIGRGETDEAYRVFR-----RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            L   G+ + A ++F      R  K C+ D+  Y+ +I   C+  +  +A++ +  M   
Sbjct: 364 ALCKGGQIERATKLFNDAMGSRTAK-CKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVES 422

Query: 404 RFIPSMHTFSVLINGL 419
           + +   H +  + +GL
Sbjct: 423 KLVAKPHIYKAMADGL 438



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 117/260 (45%), Gaps = 39/260 (15%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++  ++  + + +++  A Y    M K G + N+  FN LL  LC +  + +A  +F+ M
Sbjct: 217 SYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +R   P + TY++L+ G  +   + +A + F +M+  G  P++ TY  ++  LC A +V
Sbjct: 277 VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKV 336

Query: 252 DEALGIVKSMDST--------------------------------------VCRPTSFIY 273
           ++AL I+K M ST                                       C+P S+ Y
Sbjct: 337 EDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAY 396

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S +++    +++  +A + FL M ++ ++A   +Y A+        + + V RV  + ++
Sbjct: 397 STIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERVCLEASA 456

Query: 334 KGVAPNSRTCNIILNGLIGR 353
            G+    +     LN  + R
Sbjct: 457 HGIELQQKDAPQPLNPHLPR 476



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           T F Y+  ++          A   F +M     L ++  Y  ++   C   K      +L
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388
           +DM SK + P +   N++++ L   G+ D AY +++R+   C  D  +Y M+    C+  
Sbjct: 96  QDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKAD 155

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           ++++A  V+  M+    +PS+ T++ L+ G C  G +  +  LLE+MIE
Sbjct: 156 QIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIE 204



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY   +    +GG   KA K++  M  K  +P+++T+ +++ GLCD      +  LL+DM
Sbjct: 39  TYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDM 98

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             K + P+      L   L K G+ D    L ++++
Sbjct: 99  ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLS 134


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 198/408 (48%), Gaps = 38/408 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKV 147
           +++ +  S+ A ++++ ++ K+    + W +  + +++  ++NV T  I++    +  K+
Sbjct: 181 RKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKL 240

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           +      + M++ GV  +L  +N L++A C+   V +A  + DCM  + + P   TY+ L
Sbjct: 241 DNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNAL 300

Query: 207 LEGWGKDPNLPRAR-----------------------------------EIFREMVDTGC 231
           + G  K+ +  RA+                                    +F EM+  G 
Sbjct: 301 INGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGV 360

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD++++  +V V  + G +  AL   + M      P + IY++L++ Y   + +  A+ 
Sbjct: 361 VPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALK 420

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
              EM + G + DV  YN L+   C+     +   + K+M  +GV P+  T   +++G  
Sbjct: 421 MRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYC 480

Query: 352 GRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G   +A  +F  M ++  + D  TY  ++  FC+ GE+EKA ++W  M  +   PS  
Sbjct: 481 KDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYI 540

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +FS+LING C  G+VS++  L ++M EKGI+P+  T   + K  ++ G
Sbjct: 541 SFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAG 588



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 178/399 (44%), Gaps = 56/399 (14%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML----------NVETFCIIMRKYARVQKVE 148
            Y+++I  L K   Y+         R KR+L          N  TF  ++ +  R + V 
Sbjct: 296 TYNALINGLCKEGSYE---------RAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVW 346

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILL 207
           EA   FN M + GV  +L +F+ ++    ++  + +A   F+ MK    +PD+  Y+IL+
Sbjct: 347 EAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILI 406

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+ ++ ++  A ++  EMV+ GC  D+VTY  +++ LC+   +D+A  + K M      
Sbjct: 407 NGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVF 466

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK----- 322
           P  +  + L+H Y  +  +  A+  F  M    +  DV  YN L+  FCK  + +     
Sbjct: 467 PDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKEL 526

Query: 323 ------------------------------NVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
                                           +R+  +M  KG+ P   TCN I+ G + 
Sbjct: 527 WYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLR 586

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G   +A      MI +    D  TY  +I  F +    ++AF +   M+ +  +P++ T
Sbjct: 587 AGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVT 646

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++ ++ G    G + ++ ++L  MI+KGI P   T+  L
Sbjct: 647 YNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSL 685



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 162/349 (46%), Gaps = 2/349 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF- 189
           V  F +++R Y + +K+ E    F +++K G   ++ A N LL A+ K   V  A +++ 
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           D +K   I +  T +I++    KD  L        EM + G   D+VTY  +V+  C+ G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            V EA G+V  M     +P  F Y+ L++    E   E A     EM   G+  + A +N
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            ++   C+        RV  +M  +GV P+  + + I+      GE   A   F +M  +
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               D   YT++I  +C+  ++  A K+   M  +  +  + T++ L+NGLC   ++ D+
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDA 453

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             L ++M+E+G+ P   T   L     K+G       L E M L   +P
Sbjct: 454 DELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKP 502



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 151/311 (48%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  Y R   V  A+   N M + G   ++  +N LL+ LC+ K +  A E+F  M 
Sbjct: 402 YTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMV 461

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R + PD  T + L+ G+ KD N+ +A  +F  M      PD+VTY  ++D  CK G ++
Sbjct: 462 ERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEME 521

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M S    P+   +S+L++ +     + +A   + EM++ GI   +   N +I
Sbjct: 522 KAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTII 581

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
             + +A         L  M S+GV P+  T N ++N  +     D A+ +   M  +   
Sbjct: 582 KGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLL 641

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +  TY  ++  F + G +++A  V   M  K   P   T++ LING   K  + ++  +
Sbjct: 642 PNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRV 701

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 702 HDEMLQRGFVP 712



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 103/213 (48%), Gaps = 1/213 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  +M  + +V ++E+A   +  M    +  +  +F+ L++  C    V +A  ++
Sbjct: 503 DVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLW 562

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D MK++ I P   T + +++G+ +  NL +A +    M+  G  PD +TY  +++   K 
Sbjct: 563 DEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKE 622

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
              D A  ++ +M+     P    Y+ ++  +    R+++A     +M   GI  D + Y
Sbjct: 623 ENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTY 682

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            +LI  +   +  K  +RV  +M  +G  P+ +
Sbjct: 683 TSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDK 715


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 197/388 (50%), Gaps = 4/388 (1%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           W   + +   +++A + +++ L K  ++  MW +   M  +    NV T+  ++    R 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQ 206

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTY 203
               +A   F+ M +  +   +  +  L+  LC    + +A+ +F  M++   +P+  TY
Sbjct: 207 GDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTY 266

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + +++G+ K  ++ +A E+++EM+  G  P++VT+GI++D LCK   +  A   +  M S
Sbjct: 267 NTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P  F+Y+ L+  Y     + +A+    E+EK+ IL DV  Y+ LI   C  ++ + 
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
              +L++M  KG  PN+ T N +++G    G  ++A  V  +M  K  E +  T++ +I 
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +C+ G++E A  ++  M +K  +P +  ++ LI+G    G   ++  L ++M E G+ P
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506

Query: 443 SGETFGKLRKLLIKEGR-EDVLKFLQEK 469
           +  T   L   L K+GR  D +K    K
Sbjct: 507 NVFTLSCLIDGLCKDGRISDAIKLFLAK 534



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 191/415 (46%), Gaps = 27/415 (6%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKR-------M 128
           A   F    ++ +   + + Y ++I  L   + Y     +M DL+  ++  R       +
Sbjct: 53  ALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSV 112

Query: 129 LNV-----------ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
            NV             F +++  ++ +  VEEA++ +    K  V   + A N +L  L 
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVY---YKMDVLPAMQACNMVLDGLV 169

Query: 178 KSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K        +++  M  R   P+  TY  L++G  +  +  +A  +F EM++    P +V
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y I++  LC   R+ EA  + ++M ++   P  + Y+ ++  Y     ++ A++ + EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
             +G+L +V  +  LI   CK ++  +  + L DM S GV PN    N +++G    G  
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA  +   + K     D  TY+++IK  C    +E+A  + + MK K F+P+  T++ L
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTL 409

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I+G C +G +  +  +   M EKGI P+  TF  L     K G+ +    L  +M
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 108/217 (49%), Gaps = 5/217 (2%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAY 100
           M+S+ K ++D A    G+  +  +   +++ +  AG L+      +E ++      V  Y
Sbjct: 314 MVSARKFLIDMA--SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTY 371

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
             +I+ L  + + +    L+  M+ K  L N  T+  ++  Y +   +E+A+   + M +
Sbjct: 372 SILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPR 218
            G+  N+  F+ L+   CK+  +  A  ++  M  +  +PD   Y+ L++G  KD N   
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           A  + +EM + G +P++ T   ++D LCK GR+ +A+
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAI 528


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 188/374 (50%), Gaps = 4/374 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  L K     + ++L+N M   ++   V  +  I+    + + +++A+  F  M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           +  G+  N+  ++ L+S LC       A  +   M +R I PD  T+S L++ + K+  L
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +++ EMV    +P IVTY  +++  C   R+DEA  + + M S  C P    Y+ L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+E+ ++ F EM + G++ +   YN LI    +A        + K+M S GV
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N +L+GL   G+ ++A  VF  + +   E    TY +MI+  C+ G++E  + 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P +  ++ +I+G C KG   ++  L ++M E G  P+   +  L +  +
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 456 KEG-REDVLKFLQE 468
           ++G RE   + ++E
Sbjct: 583 RDGDREASAELIKE 596



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 191/378 (50%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK+ ++ ++  L   M+   +  N  T+ I++  + R  ++  A+   
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVL 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M K G   N+   + LL+  C SK + +A  + D M    + P++ T++ L+ G    
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+VTYG++V+ LCK G  D A  ++  M+     P   IY
Sbjct: 200 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        ++DA++ F EME  GI  +V  Y++LI   C   ++ +  R+L DM  
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + P+  T + +++  +  G+  EA +++  M+K   +    TY+ +I  FC    L++
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++++M  K   P + T++ LI G C    V +   +  +M ++G+  +  T+  L +
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439

Query: 453 LLIKEGREDVLKFLQEKM 470
            L + G  D+ + + ++M
Sbjct: 440 GLFQAGDCDMAQEIFKEM 457



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 3/353 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
           Y+ +   ++++I  L    +      L++ M  K    ++ T+ +++    +    + A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
              N M++  +   +  +N ++  LCK K++  A  +F  M+ + I P+  TYS L+   
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                   A  +  +M++   NPD+ T+  ++D   K G++ EA  +   M      P+ 
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             YS L++ + + +R+++A   F  M       DV  YN LI  FCK  + +    V ++
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
           M+ +G+  N+ T NI++ GL   G+ D A  +F+ M+      +  TY  ++   C+ G+
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           LEKA  V++Y++  +  P+++T++++I G+C  G V D   L  ++  KG++P
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    +++EA   F  M       ++  +N L+   CK K V +  E+F
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+IL++G  +  +   A+EIF+EMV  G  P+I+TY  ++D LCK 
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++A+ + + +  +   PT + Y++++       ++ED  D F  +   G+  DV  Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC+    +    + K+M   G  PNS   N ++   +  G+ + +  + + M +
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM-R 598

Query: 369 LC--EADADTYTMMIKMFCQGGELEKAF 394
            C    DA T  ++  M    G L+K+F
Sbjct: 599 SCGFAGDASTIGLVTNML-HDGRLDKSF 625



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 1/269 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K R  P    +S LL    K         +  +M + G   +  TY I+++  C+  ++
Sbjct: 73  VKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQL 132

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL ++  M      P     S L++ Y    RI +AV    +M   G   +   +N L
Sbjct: 133 PLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTL 192

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I      NK      ++  M +KG  P+  T  +++NGL  RG+TD A+ +  +M +   
Sbjct: 193 IHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKL 252

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E     Y  +I   C+   ++ A  ++K M+ K   P++ T+S LI+ LC+ G  SD+  
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LL DMIE+ I P   TF  L    +KEG+
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGK 341



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 120/245 (48%), Gaps = 1/245 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +F EMV +   P I+ +  ++  + K  + D  + + + M +       + YS+
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++ +   +++  A+    +M K G   ++   ++L+  +C + +      ++  M   G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
             PN+ T N +++GL    +  EA  +  RM+ K C+ D  TY +++   C+ G+ + AF
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +   M+  +  P +  ++ +I+GLC    + D+  L ++M  KGIRP+  T+  L   L
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301

Query: 455 IKEGR 459
              GR
Sbjct: 302 CNYGR 306



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 2/211 (0%)

Query: 269 TSFIYSVLVHTYGV-ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           TS+ Y   +   G+ E +++DAV  F EM K+     +  ++ L+ A  K NKF  V  +
Sbjct: 44  TSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISL 103

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQ 386
            + M + G+  N  T +I++N    R +   A  V  +M+KL  E +  T + ++  +C 
Sbjct: 104 GEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCH 163

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              + +A  +   M +  + P+  TF+ LI+GL      S++  L++ M+ KG +P   T
Sbjct: 164 SKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVT 223

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +G +   L K G  D+   L  KM     EP
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP 254


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 178/343 (51%), Gaps = 6/343 (1%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +++V ++ +++  Y +  ++EEA+    V+ + GV+ N A ++ +L +LC    +++A +
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEAL---RVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQ 202

Query: 188 IFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +    ++ +  PD  T ++L++   K+  + +A ++F EM + GC PD+VTY +++   C
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K GR+DEA+  +K + S  C+P    +++++ +     R  DA+     M + G L  V 
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   C+         VL+ M   G  PNSR+ N ++ G       D A      M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           + + C  D  TY +++   C+ G+++ A  +   +  K   PS+ +++ +I+GL   G  
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
             +  LLE+M  KG++P   T   +   L +EG+  + +KF  
Sbjct: 443 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFH 485



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 149/326 (45%), Gaps = 5/326 (1%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-F 196
           +R+  R  ++EE       M   G + ++ A   L+   CK    + A +I   +++   
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           + D  +Y++L+ G+ K   +  A  +   M   G +P+  TY  ++  LC  G++ +A+ 
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQ 202

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++     + C P     +VL+     E+ +  A+  F EM   G   DV  YN LI  FC
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K  +     R LK + S G  P+  + N+IL  L   G   +A ++   M+ K C     
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+ ++I   CQ G L KA  V + M      P+  +F+ LI G C+   +  +   LE M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           + +G  P   T+  L   L K+G+ D
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVD 408



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 169/358 (47%), Gaps = 3/358 (0%)

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
           Q M  L   +++K   +V T  +++    +   V +A+  FN M+  G   ++  +N L+
Sbjct: 199 QAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLI 258

Query: 174 SALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
              CK   + +A      +      PD  +++++L           A ++   M+  GC 
Sbjct: 259 KGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCL 318

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P +VT+ I+++ LC+ G + +AL +++ M      P S  ++ L+  +     I+ A++ 
Sbjct: 319 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M   G   D+  YN L+ A CK  K  +   +L  ++SKG +P+  + N +++GL+ 
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 438

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+ + A  +   M  K  + D  T T ++    + G++ +A K + Y+K     P+   
Sbjct: 439 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFI 498

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
           ++ +I GLC     S +   L DM+ KG +P+  T+  L K +  EG  ED  K   E
Sbjct: 499 YNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNE 556



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 45/269 (16%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L + G ++E    ++ M +    P     + L+  +    R ++A      +E++G + D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  YN LI  +CK+ + +   RVL  M   GV+PN+ T + +L  L  RG+  +A +V  
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 365 RMI------------------------------------KLCEADADTYTMMIKMFCQGG 388
           R +                                    K C+ D  TY ++IK FC+GG
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            L++A +  K +      P + + ++++  LC  G   D+  LL  M+ KG  PS  TF 
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFN 325

Query: 449 KLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            L   L ++G       L + +N+L   P
Sbjct: 326 ILINFLCQKG------LLGKALNVLEMMP 348



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 36/266 (13%)

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           R    M  L   +R   + +V TF I++    +   + +A+    +M K+G T N  +FN
Sbjct: 301 RWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFN 360

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+   C  K + +A E  + M  R   PD  TY+ILL    KD  +  A  I  ++   
Sbjct: 361 PLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSK 420

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-------DSTVC---------------- 266
           GC+P +++Y  ++D L K G+ + A+ +++ M       D   C                
Sbjct: 421 GCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREA 480

Query: 267 ------------RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
                       RP +FIY+ ++       +   A+D   +M   G     A Y  LI  
Sbjct: 481 MKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKG 540

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNS 340
                  ++  ++  ++ S+G+   S
Sbjct: 541 ITYEGLAEDASKLSNELYSRGLVKRS 566


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 175/348 (50%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I+ L K +     +DL + M  + +  NV T+  ++  +    ++ EA    
Sbjct: 149 NVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLL 208

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           N M    +  N+  +  L+ ALCK   V++A+ +   M K+   P+  +Y+ L++G+   
Sbjct: 209 NEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLI 268

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A+++F  MV  G NP++ +Y IM+D LCK+ RVDEA+ +++ +      P +  Y
Sbjct: 269 GEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTY 328

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+  +    RI  A+D   EM   G  ADV  Y +L+ A CK         +   M  
Sbjct: 329 SSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGELEK 392
           +G+ PN  T   +++GL   G    A ++F+  ++K C  +  TY +MI   C+ G L++
Sbjct: 389 RGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDE 448

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           A  +   M+    IP   TF ++I  L +K     +  LL +MI K +
Sbjct: 449 ALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL 496



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 169/340 (49%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++  ++    ++ +   A+    +++      N+  +N ++  LCK K V +A +++  M
Sbjct: 117 SYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R I P+  TYS L+ G+     L  A  +  EM+    NP++ TY I++D LCK G+V
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKV 236

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  ++  M     +P    Y+ L+  Y +   +++A   F  M + G+  +V  YN +
Sbjct: 237 KEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIM 296

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I   CK+ +      +L+++  K + PN+ T + +++G    G    A  + + M    +
Sbjct: 297 IDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356

Query: 372 -ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            AD  TYT ++   C+   L+KA  ++  MK +   P+ +T++ LI+GLC  G   ++  
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQK 416

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L + ++ KG R +  T+  +   L KEG  D    ++ KM
Sbjct: 417 LFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKM 456



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 6/349 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T   +M+      +V+++++  + +   G   +  ++  LL+ LCK    R A ++ 
Sbjct: 79  NTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLL 138

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             ++DR   P+   Y+ +++G  KD  +  A +++ EM   G  P+++TY  ++   C A
Sbjct: 139 RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLA 198

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ EA G++  M      P  + Y++L+     E ++++A +    M K G+  +V  Y
Sbjct: 199 GQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSY 258

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N L+  +C   + +N  ++   M  KGV PN  + NI+++ L      DEA  + R ++ 
Sbjct: 259 NTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLH 318

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    +  TY+ +I  FC+ G +  A  + K M  +     + T++ L++ LC    +  
Sbjct: 319 KNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDK 378

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVK 475
           +  L   M E+GI+P+  T+  L   L K GR ++  K  Q   +LLVK
Sbjct: 379 ATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQ---HLLVK 424



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 168/368 (45%), Gaps = 3/368 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++ ++ SL K++ Y     L   M+ K +  ++ T  I++  +  + ++  +     
Sbjct: 10  IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLG 69

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDP 214
            + K G   N    N L+  LC    V+K+    D  +   F  D  +Y+ LL G  K  
Sbjct: 70  KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG 129

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A ++ R + D    P++V Y  ++D LCK   V+EA  +   MD+    P    YS
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ + +  ++ +A     EM    I  +V  Y  L+ A CK  K K    +L  M  +
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           GV PN  + N +++G    GE   A ++F  M+ K    +  +Y +MI   C+   +++A
Sbjct: 250 GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEA 309

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             + + +  K  +P+  T+S LI+G C  G ++ +  LL++M  +G      T+  L   
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDA 369

Query: 454 LIKEGRED 461
           L K    D
Sbjct: 370 LCKNQNLD 377



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 111/209 (53%), Gaps = 2/209 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q+    +V +Y+ MI+ L K ++     +L+  +  K M+ N  T+  ++  + ++ ++ 
Sbjct: 283 QKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRIT 342

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+     M   G   ++  +  LL ALCK++N+ KA  +F  MK+R I P+  TY+ L+
Sbjct: 343 SALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALI 402

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K      A+++F+ ++  GC  ++ TY +M+  LCK G +DEAL +   M+   C 
Sbjct: 403 DGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCI 462

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           P +  + +++ +   +++ + A     EM
Sbjct: 463 PDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 190/378 (50%), Gaps = 9/378 (2%)

Query: 80  AFCFFKWA---EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFC 135
           A C F++A   E+++N +  + +  +MI +L ++ + ++   +  A  T+   N V  F 
Sbjct: 59  AICCFEFAVKRERKKNEQGKLAS--AMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFS 116

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCM-K 193
            I+  Y R     EA+  F  M+ YG+  NL  +N ++ A  K     ++  EIFD M +
Sbjct: 117 AIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLR 176

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +   PD  T++ LL    K      AR +  EMV+ G + DI TY  ++D +CK G++D 
Sbjct: 177 NGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDM 236

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  I+  M +    P    YS ++  Y    R++DA + F EM+  GI  D   YN L+ 
Sbjct: 237 AFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLS 296

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEA 372
            + K  +F+    V ++M + G+  +  T N +L G   + + D   +VF  M  +    
Sbjct: 297 IYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSP 356

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  TY+ +I ++ +GG   +A  V++  K       +  +S LI+ LC  G+V  +  LL
Sbjct: 357 NLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLL 416

Query: 433 EDMIEKGIRPSGETFGKL 450
           ++M ++GIRP+  T+  +
Sbjct: 417 DEMTKEGIRPNVVTYNSI 434



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 147/345 (42%), Gaps = 68/345 (19%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M   G+ Q++  +N LL A+CK   +  A EI   M  +  +P+  TYS +++G+ K   
Sbjct: 209 MVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGR 268

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR-------- 267
           L  AR +F EM   G + D V+Y  ++ +  K GR +EA+ + + M+++  R        
Sbjct: 269 LDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNA 328

Query: 268 ---------------------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
                                      P    YS L+  Y       +A+D F E +K G
Sbjct: 329 LLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAG 388

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR------- 353
           + ADV +Y+ALI A CK    ++   +L +M  +G+ PN  T N I++   GR       
Sbjct: 389 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF-GRPATTESV 447

Query: 354 ----GETDE------AYRVFRRMIKLCEADADTYTMMIKMFCQ-------------GGEL 390
               G+T E      +     +  K   AD +    +IK+F Q             G E+
Sbjct: 448 VDDAGQTSELQIDSLSSSAVEKATKSLVADRED-NRIIKIFGQLAAEKAGQAKNSGGQEM 506

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                V+  M      P++ TFS ++N         ++ +LLE++
Sbjct: 507 MCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEEL 551



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 2/203 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           +N   +V  Y +MI+  AK  +     +L N M+   + L+  ++  ++  YA++ + EE
Sbjct: 247 KNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEE 306

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+     M+  G+ +++  +N LL    K       +++F+ MK R + P+  TYS L++
Sbjct: 307 AMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLID 366

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            + K      A ++FRE    G   D+V Y  ++D LCK G V+ A+ ++  M     RP
Sbjct: 367 VYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 426

Query: 269 TSFIYSVLVHTYGVENRIEDAVD 291
               Y+ ++  +G     E  VD
Sbjct: 427 NVVTYNSIIDAFGRPATTESVVD 449



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M+  L + G+V+ A  + K+  +     T + +S ++  YG      +A+  F  M+  G
Sbjct: 83  MISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYG 142

Query: 301 ILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           +  ++  YNA+I A  K   +FK V  +  +M   G+ P+  T N +L  +  +G   EA
Sbjct: 143 LKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLL-AVCSKGGLWEA 201

Query: 360 YRVFR-RMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            R     M+ +  + D  TY  ++   C+GG+L+ AF++   M  K  +P++ T+S +I+
Sbjct: 202 ARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMID 261

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           G    G + D+  L  +M   GI     ++  L  +  K GR E+ +   +E  N
Sbjct: 262 GYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMEN 316



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 141/365 (38%), Gaps = 45/365 (12%)

Query: 127 RMLNVETFCIIMRKYARVQKVEEAV--YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           R+   + +  ++R+       ++A+  + F V ++    +     + ++S L +   V  
Sbjct: 36  RLSGSDDYVFLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASAMISTLGRLGKVEM 95

Query: 185 AQEIFDC-MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A+ +F   + + +      +S ++  +G+      A +IF  M D G  P++VTY  ++D
Sbjct: 96  AKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVID 155

Query: 244 VLCKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
              K G      L I   M     +P    ++ L+         E A     EM   GI 
Sbjct: 156 ACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGID 215

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+  YN L+ A CK  +    + ++ +M +K + PN                       
Sbjct: 216 QDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPN----------------------- 252

Query: 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                        TY+ MI  + + G L+ A  ++  MK         +++ L++     
Sbjct: 253 -----------VVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKL 301

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM-------NLLVK 475
           G   ++  +  +M   GIR    T+  L     K+ + DV++ + E+M       NLL  
Sbjct: 302 GRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTY 361

Query: 476 EPLCD 480
             L D
Sbjct: 362 STLID 366


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 188/374 (50%), Gaps = 4/374 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  ++  L K     + ++L+N M   ++   V  +  I+    + + +++A+  F  M
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           +  G+  N+  ++ L+S LC       A  +   M +R I PD  T+S L++ + K+  L
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +++ EMV    +P IVTY  +++  C   R+DEA  + + M S  C P    Y+ L
Sbjct: 138 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    R+E+ ++ F EM + G++ +   YN LI    +A        + K+M S GV
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N +L+GL   G+ ++A  VF  + +   E    TY +MI+  C+ G++E  + 
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 317

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  + LK   P +  ++ +I+G C KG   ++  L ++M E G  P+   +  L +  +
Sbjct: 318 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 377

Query: 456 KEG-REDVLKFLQE 468
           ++G RE   + ++E
Sbjct: 378 RDGDREASAELIKE 391



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  +    +++EA   F  M       ++  +N L+   CK K V +  E+F
Sbjct: 155 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 214

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+IL++G  +  +   A+EIF+EMV  G  P+I+TY  ++D LCK 
Sbjct: 215 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 274

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++A+ + + +  +   PT + Y++++       ++ED  D F  +   G+  DV  Y
Sbjct: 275 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 334

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC+    +    + K+M   G  PNS   N ++   +  G+ + +  + + M +
Sbjct: 335 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM-R 393

Query: 369 LC--EADADTYTMMIKMFCQGGELEKAF 394
            C    DA T  ++  M    G L+K+F
Sbjct: 394 SCGFAGDASTIGLVTNML-HDGRLDKSF 420



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 131/246 (53%), Gaps = 1/246 (0%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV  GC PD+VTYG++V+ LCK G  D A  ++  M+     P   IY+ ++        
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 66

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           ++DA++ F EME  GI  +V  Y++LI   C   ++ +  R+L DM  + + P+  T + 
Sbjct: 67  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 126

Query: 346 ILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++  +  G+  EA +++  M+K   +    TY+ +I  FC    L++A +++++M  K 
Sbjct: 127 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 186

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P + T++ LI G C    V +   +  +M ++G+  +  T+  L + L + G  D+ +
Sbjct: 187 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 246

Query: 465 FLQEKM 470
            + ++M
Sbjct: 247 EIFKEM 252



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 5/275 (1%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY +++ G  K  +   A  +  +M      P ++ Y  ++D LCK   +D+AL +
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            K M++   RP    YS L+       R  DA     +M +  I  DV  ++ALI AF K
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             K     ++  +M  + + P+  T + ++NG       DEA ++F  M+ K C  D  T
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 193

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +IK FC+   +E+  +V++ M  +  + +  T+++LI GL   G    +  + ++M+
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED----VLKFLQ 467
             G+ P+  T+  L   L K G+ +    V ++LQ
Sbjct: 254 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 288



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%)

Query: 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           R + K C+ D  TY +++   C+ G+ + AF +   M+  +  P +  ++ +I+GLC   
Sbjct: 6   RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYK 65

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            + D+  L ++M  KGIRP+  T+  L   L   GR
Sbjct: 66  HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 101


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 218/452 (48%), Gaps = 40/452 (8%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK-WAEKQQNYEHSVRAYHSMIESLA 108
           ++ ALD+    +S + V  + +  ++A  LA+  F+  +  +  ++HSV   +++++  A
Sbjct: 72  IEAALDRLRREISTDAVVKIFQCLKDA-DLAWELFQCLSSPRFGFQHSVHTGNALLDVFA 130

Query: 109 KIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNL 166
           + ++++   +L+ N + T    +VET+ +++  Y   ++ EEA      M++ +GV  +L
Sbjct: 131 RTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSL 190

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
              N +L  LCKS  V  A + F+ ++      + T+SIL+ G  K   + +A  + +E 
Sbjct: 191 KTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQET 250

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              GC  DI TY  +V+ L K  ++ EA+ +++ + +  C PT   Y+ L++      R+
Sbjct: 251 TTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRL 310

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           E+A+D   ++  NG   DV  Y +LI    K  +    Y++ K+M S+G+A ++     +
Sbjct: 311 EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTAL 370

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           + GL+  G+  +A  V++ M    C  D  T + MI    + G +  A +++K M+ +  
Sbjct: 371 IRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 430

Query: 406 IPS-------MH----------------------------TFSVLINGLCDKGIVSDSCV 430
            P+       +H                            T+++LI+GLC  G V  +  
Sbjct: 431 APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARA 490

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
             ++M+E G +P   T+  L   L K G  D 
Sbjct: 491 FFDEMLEAGCKPDVYTYNILISGLCKAGNTDA 522



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 144/289 (49%), Gaps = 8/289 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T   ++   ++  ++  AV  F  M+  G+  N   ++ L+  LCK++ +  A E+ 
Sbjct: 398 DVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 457

Query: 190 DCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK  F  PD+ TY+IL++G  K  ++  AR  F EM++ GC PD+ TY I++  LCKA
Sbjct: 458 AQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKA 517

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G  D A G++  M S+      F+YS LV       ++E     F EME++G+ A+    
Sbjct: 518 GNTDAACGVLDDMSSS-----RFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTR 571

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             LI   CKAN+      +   +  +G+ P+    N I++ LI  G+ +E   V++ M +
Sbjct: 572 TRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEMTR 630

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
             + D  TY  ++        +++A   +  M  + ++P +     L +
Sbjct: 631 WWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKLAD 679



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 170/379 (44%), Gaps = 42/379 (11%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +++ T+  I+   A+ +K++EAV     +   G T  +A +N LL+ LCK   + +A ++
Sbjct: 257 IDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 316

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDP--------------------------------- 214
              + D    PD  TY+ L++G GK+                                  
Sbjct: 317 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 376

Query: 215 --NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +P+A  +++ M   GC PD+VT   M+D L KAGR+  A+ I KSM++    P   +
Sbjct: 377 TGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV 436

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS L+H      +++ A++   +M+K     D   YN LI   CK+   +       +M 
Sbjct: 437 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 496

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392
             G  P+  T NI+++GL   G TD A  V   M     +    Y+ ++   C+ G+LE 
Sbjct: 497 EAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM----SSSRFVYSSLVDGLCKSGKLEG 552

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
              ++  M+ +  + +  T + LI  LC    V D  V L + I K   P    +  +  
Sbjct: 553 GCMLFHEME-RSGVANSQTRTRLIFHLCKANRV-DEAVSLFNAIRKEGMPHPYAYNSIIS 610

Query: 453 LLIKEGREDVLKFLQEKMN 471
            LIK G+ +  + + ++M 
Sbjct: 611 ALIKSGKVNEGQAVYQEMT 629



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           Y S+++ L K  + +    L + M    + N +T   ++    +  +V+EAV  FN ++K
Sbjct: 537 YSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRK 596

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
            G+    A +N ++SAL KS  V + Q ++  M   + PD  TY+ LL G      + RA
Sbjct: 597 EGMPHPYA-YNSIISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGMIGANRMDRA 655

Query: 220 REIFREMVDTGCNPDI 235
              + EM   G  P +
Sbjct: 656 HYYYLEMTGRGYVPPV 671


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 182/386 (47%), Gaps = 4/386 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+++I+   K+ +    + L+  M       NV T+ +++  + +  K E+A+   
Sbjct: 289 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 348

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
            VM + G   NL  +N LL   CK   V +A ++   M  +  +P+  +Y+ ++ G  K 
Sbjct: 349 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 408

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +     +  +M+   C PDIVT+  ++D +CK  RVD A  +   +  + C P    Y
Sbjct: 409 TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 468

Query: 274 SVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           + LVH      R + A     EM  K G   D+  YN +I   CK+ +    Y++   M 
Sbjct: 469 NSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQML 528

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELE 391
           S G+AP+  T +I+++ L      DEA  V   M+K   +  A TY  +I  FC+ G L+
Sbjct: 529 SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLD 588

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           KA ++ + +  K   P + TFS+ I+ L  +G +  +  LLE M+  G+ P   T+  L 
Sbjct: 589 KALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLL 648

Query: 452 KLLIKEGREDVLKFLQEKMNLLVKEP 477
           K      R +    L E M     EP
Sbjct: 649 KGFCDASRTEDAVDLFEVMRQCGCEP 674



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 187/376 (49%), Gaps = 4/376 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKI-RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
             +  +V +Y++++    K  R    +W L   +      +V ++  ++    ++ +V+E
Sbjct: 73  NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDE 132

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A    + M + G   N+  +  L+   C+  ++  A E+   M +R + P++ TY+ ++ 
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 192

Query: 209 GWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           G      L  A ++F+EM ++G C PD+ TY  +VD L K+G+VD+A  +V++M S  C 
Sbjct: 193 GLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCS 252

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS L+H      ++++A      M ++G   ++  YN +I   CK  +    Y +
Sbjct: 253 PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHL 312

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           L++M   G  PN  T  ++L+     G+ ++A  +   M+ K    +  TY  ++ MFC+
Sbjct: 313 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 372

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             E+E+A ++   M  K  +P++ +++ +I GLC    V +  +LLE M+     P   T
Sbjct: 373 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVT 432

Query: 447 FGKLRKLLIKEGREDV 462
           F  +   + K  R D+
Sbjct: 433 FNTIIDAMCKTYRVDI 448



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 185/378 (48%), Gaps = 7/378 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKV 147
           Q+  + +V  Y ++++   ++       +LV  M T+R    N  T+  IM      +K+
Sbjct: 142 QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM-TERGYRPNAITYNNIMHGLCSGRKL 200

Query: 148 EEAVYTFNVMQKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           + A+  F  M++ G    ++  ++ ++ +L KS  V  A  + + M  +   P+  TYS 
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSS 260

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           LL G  K   L  A  + + M  +GC+P+IVTY  ++D  CK GR+DEA  +++ M    
Sbjct: 261 LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 320

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C+P    Y+VL+  +    + EDA+     M + G + ++  YN+L+  FCK ++ +   
Sbjct: 321 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERAC 380

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
           ++L  M  KG  PN  + N ++ GL    +  E   +  +M+   C  D  T+  +I   
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 440

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-GIRPS 443
           C+   ++ A++++  ++     P++ T++ L++GLC       +  LL +M  K G  P 
Sbjct: 441 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 500

Query: 444 GETFGKLRKLLIKEGRED 461
             T+  +   L K  R D
Sbjct: 501 IITYNTVIDGLCKSKRVD 518



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M + G+  +      +L  LC +     A   F  M     PDS TY+ ++ G  K   L
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  EMVD G  P++ +Y  ++   CKA RV+ AL +++ M    C P    Y+ +
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++     +++++A     +M + G   +V  Y  L+  FC+         +++ M  +G 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAF 394
            PN+ T N I++GL    + D A ++F+ M +   C  D  TY+ ++    + G+++ A 
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++ + M  K   P++ T+S L++GLC  G + ++  LL+ M   G  P+  T+  +    
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300

Query: 455 IKEGREDVLKFLQEKM 470
            K GR D    L E+M
Sbjct: 301 CKLGRIDEAYHLLEEM 316



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 179/388 (46%), Gaps = 20/388 (5%)

Query: 80  AFCFFKWAEK---------QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
           AFC    AE          ++ Y  ++  Y+S+++   K  + +    L+++M  K  + 
Sbjct: 334 AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 393

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV ++  ++    +  KV E V     M       ++  FN ++ A+CK+  V  A E+F
Sbjct: 394 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELF 453

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCK 247
           + +++    P+  TY+ L+ G  K     +A  + REM    GC+PDI+TY  ++D LCK
Sbjct: 454 NLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCK 513

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE-MEKNGILADVA 306
           + RVD A  +   M S    P    YS+++ +   + R  D  +  LE M KNG      
Sbjct: 514 SKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL-CKWRFMDEANNVLELMLKNGFDPGAI 572

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  LI  FCK         +L+ + SKG  P+  T +I ++ L  RG   +A  +   M
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 632

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++     D  TY  ++K FC     E A  +++ M+     P   T++ L+  L DK   
Sbjct: 633 LRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSY 692

Query: 426 SDSCVLLE---DMIEKGIRPSGETFGKL 450
            D  +L E    M++ G + + E   KL
Sbjct: 693 KD--LLAEVSKSMVDTGFKLNHELSSKL 718


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 210/464 (45%), Gaps = 43/464 (9%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           +  PS   L A  S S ++ S     +   +     R+SP+ V  ++ + +N   LA   
Sbjct: 65  TDHPSHHHLAAVDSKSTLLKS---YTVTPPIKPWPQRLSPKRVVSMISRQQNL-DLALQI 120

Query: 84  FKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKY 141
           F  A K  +N+ H+   Y +MIE L+K R ++ M  L++ +   ++   E  F  ++R Y
Sbjct: 121 FDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIRNY 180

Query: 142 ARVQKVEEAVYTF------------------------------------NVMQKYGVTQN 165
               + + A+ TF                                    N  +K+G+  N
Sbjct: 181 GFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPN 240

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           +   N L+ ALCK  ++  A  + + M    FIP+  TY+ +L G+    ++  AR +F 
Sbjct: 241 VFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFG 300

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           E++D G  PD  TY I++D  CK GR  +A+ ++  M+     P    Y V++  Y  E 
Sbjct: 301 EILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEK 360

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +  + ++   +M +   +   A+   +I   C+  K +    + K +  K   P++   +
Sbjct: 361 KSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITS 420

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            +++ L   G+  EA ++F    K       TY  +I   C+GGEL +A ++W  M  K 
Sbjct: 421 TLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKG 480

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +P+  T+++LI G C  G   +   ++E+M++ G  P+  T+ 
Sbjct: 481 CVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 146/312 (46%), Gaps = 21/312 (6%)

Query: 172 LLSALCKSKNVRKAQEIFDC---MKDRFIPDSKTYSILLEGWGK----DPNLPRAREIFR 224
           ++S + + +N+  A +IFD        F  + +TY  ++E   K    +P      ++ +
Sbjct: 104 VVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHK 163

Query: 225 EMVDTGCNPDIV---TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
             +  G N  I     YG        AGR   A+     + S   +P+   ++ L++T  
Sbjct: 164 SQIKCGENLFITVIRNYGF-------AGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTL- 215

Query: 282 VENRIEDAVDTFLE--MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           V+N+  D V    +   +K GI+ +V   N L+ A CK N      RVL++M + G  PN
Sbjct: 216 VQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPN 275

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T   IL G + +G+   A RVF  ++ +    D  TYT+++  +C+ G    A KV  
Sbjct: 276 VVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMD 335

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M+  R  P+  T+ V+I   C +    +   LL+DM+EK   PS     ++  +L +EG
Sbjct: 336 EMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEG 395

Query: 459 REDVLKFLQEKM 470
           + +V   L +K+
Sbjct: 396 KVEVACELWKKL 407



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 1/177 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQ 158
           Y  +IE+  K ++   + +L++ M  K+ +     C  ++       KVE A   +  + 
Sbjct: 349 YGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLL 408

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           K   T + A  + L+  LCK   V +A+++FD  +   IP + TY+ L+ G  +   LP 
Sbjct: 409 KKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPE 468

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           A  ++  MV+ GC P+  TY +++   CK G   E + +++ M    C P    Y++
Sbjct: 469 AARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 199/396 (50%), Gaps = 40/396 (10%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           MI  L + R   + +     +R K   NV TF +++    +  K+ +A      M+ YG 
Sbjct: 195 MIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGC 254

Query: 163 TQNLAAFNGLLSALCK---SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPR 218
           + N+ ++N L+   CK   +  + KA  +   M +  + P+  T++IL++G+ KD NLP 
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPG 314

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           + ++F+EM+D    P++++Y  +++ LC  G++ EA+ +   M S   +P    Y+ L++
Sbjct: 315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN 374

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +   + +++A+D F  ++  G +    MYN LI A+CK  K  + + + ++M  +G+ P
Sbjct: 375 GFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVP 434

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           +  T N ++ GL   G  + A ++F ++      D  T+ ++++ +C+ GE  KA  + K
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLK 494

Query: 399 YM------------------------------------KLKRFIPSMHTFSVLINGLCDK 422
            M                                    K +R   ++ +++VL+ G   K
Sbjct: 495 EMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQK 554

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           G + D+ +LL +M+EKG+ P+  T+  +++ ++ +G
Sbjct: 555 GKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 5/215 (2%)

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           SM   VC   S I  +LV  Y   +R E   + F      G          L+ A  K N
Sbjct: 144 SMCDNVC-VNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKEN 202

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
           +  +V  V K+M  + + PN  T N+++N L   G+ ++A  V   M +  C  +  +Y 
Sbjct: 203 RSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYN 262

Query: 379 MMIKMFCQ---GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            +I  +C+    G++ KA  V K M      P++ TF++LI+G      +  S  + ++M
Sbjct: 263 TLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM 322

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +++ ++P+  ++  L   L   G+      +++KM
Sbjct: 323 LDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM 357



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V  Y+ +I  L +    +    L + + +K + ++ TF I+M  Y R  +  +A      
Sbjct: 436 VGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKE 495

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDP 214
           M K G+      +N ++   CK  N++ A  +   M+   R   +  +Y++LL+G+ +  
Sbjct: 496 MSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            L  A  +  EM++ G  P+ +TY I+ + +   G V +  G
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEG 597


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 30/458 (6%)

Query: 29  TEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
           +E +D +  +  I LS P      +L +    ++P  V  +   F      A  FF W  
Sbjct: 35  SEPVDLSAQLLSI-LSRPNWQKHPSLRKLLPSLTPSHVSSLF-AFNLDPQTALSFFNWIA 92

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQI--------------MWDLVNAMRTKRMLNVE-- 132
            +  ++H+V +Y SM+  L + R   +              + D++  +   R +N +  
Sbjct: 93  LRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGE 152

Query: 133 --------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
                    +  I+   ++   ++E    +  +    ++ N+  FN +++  CK  NV +
Sbjct: 153 FKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVE 212

Query: 185 AQEIF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           A E++    ++    PD+ TY+ L+ G  ++  +  A E+F  M   GC  + V+Y  ++
Sbjct: 213 A-ELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
             LC+AGR++EAL +   M    C PT   Y+VL++      R  +A++ F EM++ G  
Sbjct: 272 HGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            +V  Y  LI   CK NK     ++L +M+ KG+ P+  T N +++G    G  D+A+ +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 363 FRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M    C  +  TY  +I   C+  ++ KA  +   M  ++  PS+ T++ LI+G C 
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              +  +  LL  M E G+ P   T+      L KEGR
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGR 489



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 178/337 (52%), Gaps = 3/337 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           ++ EA+  F  M +      +  +  L+ AL  S    +A  +F+ MK++   P+  TY+
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L++G  K+  +  AR++  EM + G  P +VTY  ++D  CK G +D+A  I+  M+S 
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P +  Y+ L+     + ++  A+    +M +  +   +  YN+LI   CK N  ++ 
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           YR+L  MN  G+ P+  T ++ ++ L   G  +EA  +F  +  K  +A+   YT +I  
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +C+ G+++ A+ + + M     +P+ +T++VLI GLC +  + ++  L+  M+  G++P+
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 444 GETFGKLRKLLIKEGRED-VLKFLQEKMNLLVKEPLC 479
             T+  L   ++K+G  D  LK     ++L  +  +C
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVC 615



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 177/387 (45%), Gaps = 21/387 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           S+  Y+S+I    K+   +  + L++ M    ++  + T+ + +    +  +VEEA   F
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + ++  GV  N   +  L+   CK   +  A  + + M  D  +P+S TY++L+EG  K+
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  +M+  G  P +VTY I++  + K G  D AL +   M S   +P    Y
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +H Y  +  +E+  D   +M + GIL D+  Y  LI  + +       +  LK M  
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 334 KGVAPNSRTCNIILNGLIGRGETDE------------------AYRVFRRMIKL-CEADA 374
            G  P+    +I++  L       E                  A ++F +M++  C  D 
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDV 737

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y  +I  FCQ   LE+A  +  +MK +   PS   ++ L++  C  G+ +++  L++ 
Sbjct: 738 SIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDA 797

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRED 461
           M+E G+ P  E++  L   L  EG  +
Sbjct: 798 MVENGLLPLLESYKLLVCGLYIEGSNE 824



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V T+ +++   +   +  EA+  FN M++ G   N+  +  L+  LCK   + +A+++  
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLS 358

Query: 191 CMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M ++  IP   TY+ L++G+ K+  +  A EI   M    C P+  TY  ++  LCK  
Sbjct: 359 EMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKR 418

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +V +A+ ++  M      P+   Y+ L+H     N +E A      M +NG++ D   Y+
Sbjct: 419 KVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYS 478

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
             I   CK  + +    +   + +KGV  N      +++G    G+ D AY +  RM+  
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLND 538

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            C  ++ TY ++I+  C+  ++++A  +   M      P++ T+++LI  +   G    +
Sbjct: 539 ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             +   M+  G +P   T+         +G  + +  +  KMN
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 175/386 (45%), Gaps = 34/386 (8%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I+   K+ +  + + L+  M     L N  T+ +++    + +K++EA      M 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
             GV   +  +  L+  + K      A ++F+ M    + PD  TY+  L  +     L 
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              ++  +M + G  PD+VTY +++D   + G    A   +K M  T C+P+ +I S+L+
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 278 HTYGVENRIE--------DAVDTFLEME----------KNGILADVAMYNALIGAFCKAN 319
                ENR++        D+V   LE E          ++G   DV++Y ALI  FC+  
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQE 751

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADA 374
           + +    ++  M  +G++P+    N +L+     G   EA R+   M++     L E   
Sbjct: 752 RLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLE--- 808

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +Y +++      G  EKA  V+  +    +      + VLI+GL  + +V +   L++ 
Sbjct: 809 -SYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDI 867

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRE 460
           M EKG +P+  T+      L+ EG E
Sbjct: 868 MEEKGCQPNPLTYS-----LLIEGLE 888



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 1/196 (0%)

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +PT   Y+ ++ +      I++    +LE+  N I  ++  +NA++  +CK         
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
               +   G+ P++ T   ++ G       D AY VF  M  K C+ +  +YT +I   C
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G + +A K++  M      P++ T++VLI  L   G   ++  L  +M EKG  P+  
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335

Query: 446 TFGKLRKLLIKEGRED 461
           T+  L   L KE + D
Sbjct: 336 TYTVLIDGLCKENKMD 351



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 108/283 (38%), Gaps = 37/283 (13%)

Query: 93  YEHSVRAYHS--MIES----LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           Y   + AY S  M+E     +AK+ +  I+ DLV            T+ +++  YAR+  
Sbjct: 617 YTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLV------------TYTVLIDGYARLGL 664

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK------------------AQEI 188
              A      M   G   +L   + L+  L     +++                  A ++
Sbjct: 665 THRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKL 724

Query: 189 FDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F+ M +     D   Y  L+ G+ +   L  A+ +   M + G +P    Y  ++D  CK
Sbjct: 725 FEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCK 784

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G   EA+ +V +M      P    Y +LV    +E   E A   F  +   G   D   
Sbjct: 785 LGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVA 844

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           +  LI    K +       ++  M  KG  PN  T ++++ GL
Sbjct: 845 WKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 165/314 (52%), Gaps = 4/314 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++  +  I+    + ++V +A+  F  + + G+  N+  +  L++ LC S     A  + 
Sbjct: 189 DIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLL 248

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D +K +  P+  TYS LL+ + K+  +  A+EIF EMV    +PDIVTY  +++ LC  
Sbjct: 249 RDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLH 308

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+DEA  +   M S  C P    Y+ L++ +    R+ED +  F +M + G++ +   Y
Sbjct: 309 DRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTY 368

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  F +             M+S GV+P+  T NI+L GL   G  ++A  +F  M K
Sbjct: 369 NTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQK 428

Query: 369 LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             E D D  TYT +I+  C+ G++E A+ ++  + LK   P + T++ +++GLC KG+  
Sbjct: 429 -SEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQH 487

Query: 427 DSCVLLEDMIEKGI 440
           +   L   M ++G+
Sbjct: 488 EVEALYTKMKQEGL 501



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 166/336 (49%), Gaps = 2/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++  + R  +V +AV   + M + G   ++ A+N ++ +LCK++ V  A + F  +  + 
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKG 220

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           I P+  TY+ L+ G         A  + R+M+     P+++TY  ++D   K G+V EA 
Sbjct: 221 IRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            I + M      P    YS L++   + +RI++A   F  M   G   DV  YN LI  F
Sbjct: 281 EIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGF 340

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CKA + ++  ++ + M+ +G+  N+ T N ++ G    G+ D+A   F +M       D 
Sbjct: 341 CKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDI 400

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++   C  G LEKA  +++ M+       + T++ +I G+C  G V D+  L   
Sbjct: 401 WTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCS 460

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  KG++P   T+  +   L  +G +  ++ L  KM
Sbjct: 461 LSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKM 496



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 157/323 (48%), Gaps = 12/323 (3%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK------NVRKAQEIFDCMKDRFIPD 199
           K+ +A+  F  M K     ++  FN LLSA+ K K      ++ K  E+     D +   
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY--- 121

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T++I++  +     +  A  +  +M+  G  PD VT G +V+  C+  RV +A+ +V 
Sbjct: 122 --TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     RP    Y+ ++ +     R+ DA+D F E+ + GI  +V  Y AL+   C + 
Sbjct: 180 KMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG 239

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYT 378
           ++ +  R+L+DM  + + PN  T + +L+  +  G+  EA  +F  M+++  + D  TY+
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C    +++A +++  M  K   P + +++ LING C    V D   L   M ++
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 439 GIRPSGETFGKLRKLLIKEGRED 461
           G+  +  T+  L +   + G  D
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVD 382



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 18/329 (5%)

Query: 63  PEIVE-----DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           P+IV      D L K R     A  FFK   ++     +V  Y +++  L    ++    
Sbjct: 188 PDIVAYNAIIDSLCKTRRVND-ALDFFKEIGRK-GIRPNVVTYTALVNGLCNSGRWNDAA 245

Query: 118 DLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            L+  M  +++  NV T+  ++  + +  KV EA   F  M +  +  ++  ++ L++ L
Sbjct: 246 RLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGL 305

Query: 177 CKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           C    + +A ++FD M  +   PD  +Y+ L+ G+ K   +    ++FR+M   G   + 
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNT 365

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           VTY  ++    + G VD+A      MDS    P  + Y++L+        +E A+  F +
Sbjct: 366 VTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFED 425

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+K+ +  D+  Y  +I   CK  K ++ + +   ++ KG+ P+  T   +++GL  +G 
Sbjct: 426 MQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485

Query: 356 TDEAYRVFRRMIK---------LCEADAD 375
             E   ++ +M +         LC  D D
Sbjct: 486 QHEVEALYTKMKQEGLMKNDSMLCLGDGD 514



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 37/294 (12%)

Query: 212 KDPNLPRAREIFREMVDT-----------------------------------GCNPDIV 236
           +D  L  A  +FREMV T                                   G   D+ 
Sbjct: 62  RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY 121

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           T+ I+++  C   +V  AL ++  M      P       LV+ +   NR+ DAV    +M
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + G   D+  YNA+I + CK  +  +     K++  KG+ PN  T   ++NGL   G  
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           ++A R+ R MIK     +  TY+ ++  F + G++ +A ++++ M      P + T+S L
Sbjct: 242 NDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSL 301

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           INGLC    + ++  + + M+ KG  P   ++  L     K  R ED +K  ++
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRK 355



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++       +++EA   F++M   G   ++ ++N L++  CK+K V    ++F
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R  + ++ TY+ L++G+ +  ++ +A+E F +M   G +PDI TY I++  LC  
Sbjct: 354 RKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDN 413

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +++AL I + M  +        Y+ ++       ++EDA   F  +   G+  D+  Y
Sbjct: 414 GLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTY 473

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMI 367
             ++   C       V  +   M  +G+  N S  C       +G G+   +  + ++M+
Sbjct: 474 TTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSMLC-------LGDGDITISAELIKKML 526


>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
          Length = 561

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 195/415 (46%), Gaps = 2/415 (0%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           K  ++ AL   GI ++ +IV +V  +    G     FF WA KQ      V  Y+ +I++
Sbjct: 116 KAAIELALTNVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKA 175

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L + +  +    ++  M  + +  N ET  I+M  + + ++V +A+  F  ++++G   +
Sbjct: 176 LGRRKFIEFXVXVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCD 235

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             + N LL  LC+  +V  A   F+ MK     +  TY+I++ GW K   +       + 
Sbjct: 236 TESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKA 295

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV  G +P+ +T+  +++ L +AGR+D+A+ +   M+ T C P + +Y+ L+  +     
Sbjct: 296 MVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRD 355

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++ +  +  M  +    ++  Y  LI AF KA K  +   +L +M  +G+ P +     
Sbjct: 356 FDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITS 415

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            +  L   G    A  ++++  K+ C      Y +++    + G+      +W  M+   
Sbjct: 416 FIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESG 475

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +      +  +INGLC+ G +  + +++E+ + KG  PS     KL   L+   +
Sbjct: 476 YSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXKGFCPSRLIRSKLNNKLLASNK 530



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 8/203 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I +    R +       N M +     N++T+  ++  + + +KV +A+   + M 
Sbjct: 343 YNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMV 402

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGKDPN 215
             G+     A    +  LC+      A  I+   K R +        Y +LL    +   
Sbjct: 403 GRGMIPTTGAITSFIEPLCQYGPPHAAMMIYK--KARKVGCRISLSAYKLLLMRLSRFGK 460

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV-KSMDSTVCRPTSFIYS 274
                 ++ EM ++G + D   Y  +++ LC  G++D A+ ++ +S+    C P+  I S
Sbjct: 461 CGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXKGFC-PSRLIRS 519

Query: 275 VLVHTYGVENRIEDAVDTFLEME 297
            L +     N++E A   FL+++
Sbjct: 520 KLNNKLLASNKVEMAYKLFLKIK 542



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/270 (17%), Positives = 103/270 (38%), Gaps = 37/270 (13%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            +  +IE L +  +     ++ + M  T  + N   +  ++  +   +  +E +  +N M
Sbjct: 307 TFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFM 366

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                  N+  +  L+ A  K++ V  A E+ D M  R  IP +   +  +E   +    
Sbjct: 367 VSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPP 426

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  I+++    GC   +  Y +++  L + G+    L +                   
Sbjct: 427 HAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNL------------------- 467

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                           + EM+++G  +D  +Y  +I   C   +      V+++   KG 
Sbjct: 468 ----------------WDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLXKGF 511

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            P+    + + N L+   + + AY++F ++
Sbjct: 512 CPSRLIRSKLNNKLLASNKVEMAYKLFLKI 541


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 217/478 (45%), Gaps = 42/478 (8%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVV--LDTALDQSGIRVSPEIVEDVL--EKFRNAGTL 79
           +S P  +       I K++  S  +   LD+   +  I++SP  V  VL  +  R    +
Sbjct: 78  ASNPQPQPSPWVNQILKLLDGSVNMESNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDI 137

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           AF FF WA KQ+NY H +  Y S+I+ L+    +  +  +    + K  L  V     ++
Sbjct: 138 AFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLI 197

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFI 197
           R +  +  VEE ++ +  M++ G+  +L  FN LL+ L  S  +  A+ +F+ M+  +  
Sbjct: 198 RSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIG 257

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  +Y+ +++G+ K  N  +A E F +M      PD +TY  ++      G  D  L +
Sbjct: 258 PDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHL 317

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + M+          YS+++     + R  +    F  M K G  A+VA+Y ALI A+ K
Sbjct: 318 YQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGK 377

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI--GR---------------------- 353
                    + + M  +G  P+  T  +I+NGL   GR                      
Sbjct: 378 NGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMF 437

Query: 354 -----------GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
                      G  DEA + F  M+ + C  D+  Y  +I    + G++E+A  ++K M+
Sbjct: 438 YSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRME 497

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +    +++T+++LI+GL  +    ++  L + MI+KGI P+  +F  L   L   G+
Sbjct: 498 KEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGK 555



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 179/385 (46%), Gaps = 15/385 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTF 154
           V +Y++MI+   K    +   +    M  KR L  +  T+  +++        +  ++ +
Sbjct: 260 VVSYNTMIKGYCKAGNTKKAMEKFTDME-KRNLEPDKITYLTLIQACYSEGNFDSCLHLY 318

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M++ G+     A++ ++  LCK     +   +F+ M  +    +   Y+ L++ +GK+
Sbjct: 319 QEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKN 378

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+  A  +F  M   G  PD VTYG++V+ LCK+GR+DEA+   +          +  Y
Sbjct: 379 GNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFY 438

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+   G   R+++A   F EM + G   D   YNALI A  K+ K +    + K M  
Sbjct: 439 SSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEK 498

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +G      T  I+++GL      +EA +++  MI K       ++  +    C  G++ +
Sbjct: 499 EGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVAR 558

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A K+   +     IP    F  +IN LC  G    +C L + ++++G     E  G++R 
Sbjct: 559 ACKILDELAPMGVIPET-AFEDMINVLCKAGRTEQACKLADGIVDRG----REVPGRVRT 613

Query: 453 LLI----KEGREDV-LKFLQEKMNL 472
           +LI    K G  D+ +K +  K+ +
Sbjct: 614 ILINALRKAGNADLAMKLMHSKIGI 638



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F E ++ G L  V   N+LI +F      + +  V + M   G+ P+  T N +LNGL+ 
Sbjct: 178 FGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVN 237

Query: 353 RGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
               + A RVF  M       D  +Y  MIK +C+ G  +KA + +  M+ +   P   T
Sbjct: 238 SMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKIT 297

Query: 412 FSVLINGLCDKGIVSDSCV-LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  LI     +G   DSC+ L ++M E+G+      +  +   L K+GR      + E M
Sbjct: 298 YLTLIQACYSEGNF-DSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENM 356

Query: 471 N 471
           N
Sbjct: 357 N 357


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 199/397 (50%), Gaps = 8/397 (2%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           L F  FK A      + SV + + ++  L K+ +   M  +   M  +R+   + +F I+
Sbjct: 111 LGFEAFKRAS-DYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIV 169

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK---AQEIFDCMK- 193
           +    +V K+ +A      M+  GV+ N+  +N L+   CK   + K   A  I   M+ 
Sbjct: 170 INGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRA 229

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           D   P+  T++IL++G+ KD N+  A ++F EM   G  P++VTY  +++ LC  G+V+E
Sbjct: 230 DGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE 289

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  +   M ++  +P    ++ L++ +     ++ A + F +M K GI  +V  YN LI 
Sbjct: 290 ATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILID 349

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEA 372
           A+CK    ++ + + + M  KGV P+  T N ++ GL  +G+ + A  +   M  K  +A
Sbjct: 350 AYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKA 409

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  TY ++I   C  GE++KA ++   M  K   PS  T++ +I+G C +G +  +  L 
Sbjct: 410 DLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLR 469

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             M + G   +  T+  L K   K+ + ED    L E
Sbjct: 470 SQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNE 506



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 170/338 (50%), Gaps = 6/338 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWD---LVNAMRTKRML-NVETFCIIMRKYARVQKVEEAV 151
           +V  Y+++I+   K+ +   M+    ++  MR   +  N  TF I++  + + + V  A+
Sbjct: 197 NVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAM 256

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
             F  M + GV  N+  +N L++ LC +  V +A  + D M +  + P+  T++ LL G+
Sbjct: 257 KVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGF 316

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K+  + +A E+F +M   G  P++ TY I++D  CK   +++A  + + M      P  
Sbjct: 317 CKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDV 376

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+     +  +E A +   EM+   + AD+  YN LI + C   + K   R+L +
Sbjct: 377 STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDE 436

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGE 389
           M  KG+ P+  T N +++G    G    A  +  +M K+   A+  TY ++IK FC+  +
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDK 496

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           LE A  +   M  K  IP+  T+ ++   + +KG V D
Sbjct: 497 LEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPD 534



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 175/384 (45%), Gaps = 49/384 (12%)

Query: 124 RTKRMLNV--ETFC-------IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           +T+ +L+V  ++FC       I++  YA+  +       F     YG+  ++ + N L+S
Sbjct: 77  QTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMS 136

Query: 175 -----------------------------------ALCKSKNVRKAQEIFDCMKDRFI-P 198
                                               LCK   + KA +I + MK R +  
Sbjct: 137 GLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSA 196

Query: 199 DSKTYSILLEGW---GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           +  TY+ L++G+   GK   + +A  I +EM   G  P+ VT+ I++D  CK   V  A+
Sbjct: 197 NVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAM 256

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M+    +P    Y+ L++      ++ +A     +M  + +  ++  +NAL+  F
Sbjct: 257 KVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGF 316

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK    K    +  DM  +G+ PN  T NI+++        ++A+ ++R M+ K    D 
Sbjct: 317 CKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDV 376

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I   C+ G+LE A  +   M  K     + T+++LI+ LC+KG +  +  LL++
Sbjct: 377 STYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDE 436

Query: 435 MIEKGIRPSGETFGKLRKLLIKEG 458
           M  KG++PS  T+  +     KEG
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEG 460



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 142/270 (52%), Gaps = 8/270 (2%)

Query: 90  QQNYEHSVRAYHSMIESL---AKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQ 145
           +Q  + +V  Y+S+I  L    K+ +   + D +VN+       N+ T   ++  + + +
Sbjct: 264 RQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKP---NIITHNALLNGFCKNK 320

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
            V++A   F+ M K G+T N+  +N L+ A CK +N+  A  ++  M  + + PD  TY+
Sbjct: 321 MVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYN 380

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+ G  +  +L  AR +  EM       D++TY I++D LC  G + +AL ++  M   
Sbjct: 381 CLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRK 440

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P+   Y+ ++  Y  E  +  A++   +MEK G LA+VA YN LI  FCK +K ++ 
Sbjct: 441 GLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDA 500

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
             +L +M  KG+ PN  T  I+   ++ +G
Sbjct: 501 NGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 129/254 (50%), Gaps = 4/254 (1%)

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY- 280
           +++EM+     P ++++ I+++ LCK G++++A  I++ M           Y+ L+  Y 
Sbjct: 150 VYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYC 209

Query: 281 --GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G   ++  A     EM  +GI  +   +N LI  FCK        +V  +MN +GV P
Sbjct: 210 KMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKP 269

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVW 397
           N  T N ++NGL   G+ +EA  +  +M+  C + +  T+  ++  FC+   +++A +++
Sbjct: 270 NVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELF 329

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  +   P++ T+++LI+  C    + D+  L   M+ KG+ P   T+  L   L ++
Sbjct: 330 DDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRK 389

Query: 458 GREDVLKFLQEKMN 471
           G  +  + L  +M+
Sbjct: 390 GDLEAARNLVSEMD 403



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 105/243 (43%), Gaps = 41/243 (16%)

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P S + + L+    +    ++     L +  +   A+  + + L+ A+ K  + +  + 
Sbjct: 57  KPISRVQTPLLSF--INYSTQEQTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFE 114

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LC 370
             K  +  G+  +  +CN +++GL+  GE  +   V++ MI+                LC
Sbjct: 115 AFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLC 174

Query: 371 E--------------------ADADTYTMMIKMFCQGGELEKAFK---VWKYMKLKRFIP 407
           +                    A+  TY  +I  +C+ G++ K +K   + K M+     P
Sbjct: 175 KVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICP 234

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           +  TF++LI+G C    VS +  +  +M  +G++P+  T+  L   L   G+ +    L+
Sbjct: 235 NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALR 294

Query: 468 EKM 470
           ++M
Sbjct: 295 DQM 297



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+ +I  L +    +   +LV+ M TK +  ++ T+ I++       ++++A+   +
Sbjct: 376 VSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLD 435

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M + G+  +   +N ++   CK  N+R A  +   M K   + +  TY++L++G+ K  
Sbjct: 436 EMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKD 495

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            L  A  +  EM++ G  P+ +TY I+ + + + G V +  G
Sbjct: 496 KLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEG 537


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 202/428 (47%), Gaps = 50/428 (11%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
            LE F  AG   F              S  + + M+ SL K  +  ++  +   M  +R+
Sbjct: 178 ALEGFDRAGDYGF------------RLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI 225

Query: 129 -LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
            +NV TF +++    +V K ++A      M+ +G + ++  +N ++   CK+  + KA  
Sbjct: 226 GVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADA 285

Query: 188 IFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M   R  P+  T++IL++G+ +D N+  A+++F EM   G  P++VTY  +++ LC
Sbjct: 286 LLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLC 345

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH---------------------------- 278
             G++DEALG+   M     +P    Y+ L++                            
Sbjct: 346 SNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVI 405

Query: 279 -------TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
                   YG   R++DA      M   G+  +V+ YN LI  FC+    K   ++ K+M
Sbjct: 406 TFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
              G+  +  T NI+++ L  +GET +A R+   M ++       TY  +I  + + G  
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNS 525

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             A  V   M+ K    ++ T++VLI G C+KG + ++  LL +M+EKG+ P+  T+  L
Sbjct: 526 TAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585

Query: 451 RKLLIKEG 458
           R  ++++G
Sbjct: 586 RDEMMEKG 593



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 186/361 (51%), Gaps = 12/361 (3%)

Query: 72  KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV 131
           KF+ AG +      W      +  SV  Y+++I+   K  +      L+  M  KR+   
Sbjct: 244 KFQKAGDVVEDMKAWG-----FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPN 298

Query: 132 E-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           E TF I++  + R + V  A   F  MQ+ G+  N+  +N L++ LC +  + +A  + D
Sbjct: 299 EITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQD 358

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M    + P+  TY+ L+ G+ K   L  ARE+  ++   G  P+++T+  ++D   KAG
Sbjct: 359 KMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAG 418

Query: 250 RVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           R+D+A  +++SM  D+ VC P    Y+ L+  +  E  +++A     EME NG+ AD+  
Sbjct: 419 RMDDAF-LLRSMMLDTGVC-PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVT 476

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN L+ A CK  + +   R+L +M   G+ P+  T N +++G    G +  A  V   M 
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLME 536

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K    A+  TY ++IK FC  G+LE+A ++   M  K  IP+  T+ +L + + +KG + 
Sbjct: 537 KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIP 596

Query: 427 D 427
           D
Sbjct: 597 D 597



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 197/436 (45%), Gaps = 57/436 (13%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETF--- 134
           L  C+FKW +K+    H+V  +  ++  LA  + Y  +  L+++  +     N   F   
Sbjct: 89  LILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSL 148

Query: 135 -------C-------IIMRKYARVQKVEEAVYTFNVMQKYG------------------- 161
                  C       +++  Y +  +++ A+  F+    YG                   
Sbjct: 149 SVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEG 208

Query: 162 ----------------VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYS 204
                           +  N+  F+ +++ LCK    +KA ++ + MK   F P   TY+
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            +++G+ K   + +A  + +EMV    +P+ +T+ I++D  C+   V  A  + + M   
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P    Y+ L++      ++++A+    +M   G+  +V  YNALI  FCK    K  
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEA 388

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIK 382
             +L D+  +G+APN  T N +++     G  D+A+ +   M+   +C  +  TY  +I 
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC-PNVSTYNCLIV 447

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC+ G +++A K+ K M+       + T+++L++ LC KG    +  LL++M E G+ P
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNP 507

Query: 443 SGETFGKLRKLLIKEG 458
           S  T+  L     +EG
Sbjct: 508 SHLTYNALIDGYFREG 523



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 57/323 (17%)

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL--LEGWGKDP 214
           +++G   N+  F  LL  L  +KN  K + + D   K+    +S  +  L  L  WG   
Sbjct: 99  KEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWG--- 155

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                           C   I+   ++V    K G +D AL           R ++   +
Sbjct: 156 ----------------CANSIIV-DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCN 198

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++ +   E RI      + EM +  I  +V  ++ +I   CK  KF+    V++DM + 
Sbjct: 199 PMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW 258

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
           G +P+  T N I++G                                  +C+ G++ KA 
Sbjct: 259 GFSPSVITYNTIIDG----------------------------------YCKAGKMFKAD 284

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            + K M  KR  P+  TF++LI+G C    V+ +  + E+M  +G++P+  T+  L   L
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 455 IKEGREDVLKFLQEKMNLLVKEP 477
              G+ D    LQ+KM+ +  +P
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKP 367



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 36/163 (22%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++  + R   V+EA      M+  G+  +L  +N L+ ALCK    RKA  + 
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 190 DCMKDRFIPDSK------------------------------------TYSILLEGWGKD 213
           D M +  +  S                                     TY++L++G+   
Sbjct: 498 DEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNK 557

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             L  A  +  EM++ G  P+  TY I+ D + + G + +  G
Sbjct: 558 GKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDG 600


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 176/349 (50%), Gaps = 6/349 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++  Y +  ++++A     V+++  V  ++  +N +L +LC S  +++A E+ 
Sbjct: 176 DVITYNVLIGGYCKSGEIDKA---LQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVL 232

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D  M+    PD  TY+IL+E    D  + +A ++  EM   GC PD+VTY ++++ +CK 
Sbjct: 233 DRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 292

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA+  + +M    C+P    +++++ +     R  DA     +M + G    V  +
Sbjct: 293 GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTF 352

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI   C+         VL+ M   G  PNS + N +L+G     + D A      M+ 
Sbjct: 353 NILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 412

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           + C  D  TY  ++   C+ G+ + A ++   +  K   P + T++ +I+GL   G    
Sbjct: 413 RGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY 472

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMNLLVK 475
           +  LLE+M  KG++P   T+  L + L  EG+ D  +K   +   L +K
Sbjct: 473 AAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIK 521



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 5/328 (1%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I +RK  R  ++EE +     M   G   ++ A   L+   C+S   RKA  I + +++ 
Sbjct: 112 IHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENS 171

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             +PD  TY++L+ G+ K   + +A ++   M      PD+VTY  ++  LC +G++ EA
Sbjct: 172 GAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEA 228

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + ++       C P    Y++L+     ++ +  A+    EM K G   DV  YN LI  
Sbjct: 229 MEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLING 288

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
            CK  +     + L +M   G  PN  T NIIL  +   G   +A R+   M+ K C   
Sbjct: 289 ICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPS 348

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             T+ ++I   C+   L +A  V + M     +P+  +++ L++G C +  +  +   LE
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGRED 461
            M+ +G  P   T+  L   L K+G+ D
Sbjct: 409 IMVSRGCYPDIVTYNTLLTALCKDGKAD 436



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 178/356 (50%), Gaps = 7/356 (1%)

Query: 97  VRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           V  Y++++ SL    K+++   + D    M+ +   +V T+ I++        V +A+  
Sbjct: 209 VVTYNTILRSLCDSGKLKEAMEVLD--RQMQRECYPDVITYTILIEATCNDSGVGQAMKL 266

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
            + M+K G   ++  +N L++ +CK   + +A +  + M      P+  T++I+L     
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS 326

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                 A  +  +M+  GC+P +VT+ I+++ LC+   +  A+ +++ M    C P S  
Sbjct: 327 TGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLS 386

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+H +  E +++ A++    M   G   D+  YN L+ A CK  K      +L  ++
Sbjct: 387 YNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLS 446

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
           SKG +P   T N +++GL   G+T+ A  +   M  K  + D  TY+ +++     G+++
Sbjct: 447 SKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVD 506

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +A K++  M+     PS  T++ ++ GLC     S +   L  M+EKG +P+  T+
Sbjct: 507 EAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATY 562



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 2/255 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  II+R      +  +A      M + G + ++  FN L++ LC+ + + +A ++ 
Sbjct: 313 NVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVL 372

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K   +P+S +Y+ LL G+ ++  + RA E    MV  GC PDIVTY  ++  LCK 
Sbjct: 373 EKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 432

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+ D A+ I+  + S  C P    Y+ ++       + E A +   EM + G+  D+  Y
Sbjct: 433 GKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITY 492

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + L+       K     ++  DM    + P++ T N I+ GL    +T  A      M+ 
Sbjct: 493 STLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVE 552

Query: 368 KLCEADADTYTMMIK 382
           K C+    TYT++I+
Sbjct: 553 KGCKPTKATYTILIE 567



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 125/275 (45%), Gaps = 10/275 (3%)

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +I L    ++  L    +    M+  G  PD++    ++   C++G+  +A  I++ +++
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
           +   P    Y+VL+  Y     I+ A+     +E+  +  DV  YN ++ + C + K K 
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQV---LERMSVAPDVVTYNTILRSLCDSGKLKE 227

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
              VL     +   P+  T  I++          +A ++   M K  C+ D  TY ++I 
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 287

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+ G L++A K    M L    P++ T ++++  +C  G   D+  LL DM+ KG  P
Sbjct: 288 GICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSP 347

Query: 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           S  TF  L   L ++      + L   +++L K P
Sbjct: 348 SVVTFNILINFLCRK------RLLGRAIDVLEKMP 376


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 183/354 (51%), Gaps = 4/354 (1%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+   F  +M  + R   +  A   F+ MQK G+  +   +  L++ LC++  +++A+ 
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 188 IFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M+D+ +  D+ TY++L++G+ K   +  A  +  +MV     P++VTY  + D LC
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G V  A  ++  M S       F Y+ L++       +E A+ T ++M++ G+  DV 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  +IGA C++ +    + +L++M  KG+ P   T N+++NG    G  +   R+   M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           + K    +  TY  ++K +C    ++   +++K M  +  +P+ +T+++LI G C    +
Sbjct: 592 LEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNM 651

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM--NLLVKEP 477
            ++     +MIEKG R +  ++  L +LL K+ +    + L EKM  + L  EP
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEP 705



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 25/425 (5%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY--- 93
           S   ++L  P   L   L Q GI  SPE    VL           C     E  Q +   
Sbjct: 200 SFDLLLLCLPSAPLLLRLRQYGISPSPESCNAVL-----------CRLPLDEAVQLFQEL 248

Query: 94  -EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
            E +  +Y+ ++++L    + +    L + M +    +V T+ I++  Y  + ++E A+ 
Sbjct: 249 PEKNTCSYNILLKALCTAGRIKDAHQLFDEMASPP--DVVTYGIMVHGYCTLSELETAIK 306

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             + M   G+  N  A+  +++ LC    V  A  +  D +    + D+  ++ ++ G+ 
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +  +L  AR  F EM   G   D VTY  +++ LC+AG + EA  +++ M+       + 
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+VL+  Y    ++ +A     +M +  +  +V  Y AL    CK         +L +M
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA----DADTYTMMIKMFCQG 387
            SKG+  N  T N ++NGL   G  ++A    R MI + EA    D  TYT +I   CQ 
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQA---MRTMIDMDEAGLKPDVYTYTTIIGALCQS 543

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            EL++A  + + M  K   P++ T++VL+NG C  G V     LLE M+EK I P+  T+
Sbjct: 544 KELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 448 GKLRK 452
             L K
Sbjct: 604 NSLMK 608



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 2/221 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E ++  Y+S+I  L K     Q M  +++        +V T+  I+    + ++++ A  
Sbjct: 492 ELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
               M   G+   +  +N L++  C S  V   + + + M ++ I P++ TY+ L++ + 
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            + N+    EI++ M+     P+  TY I++   CKA  + EAL     M     R T+ 
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTAS 671

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            Y+ L+     + +  +A   F +M K+ + A+  +YN  I
Sbjct: 672 SYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYI 712



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 286 IEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++AV  F E+ EKN        YN L+ A C A + K+ +++  +M S    P+  T  
Sbjct: 238 LDEAVQLFQELPEKN-----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYG 289

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I+++G     E + A ++   M  +  E +   YT +I + C  G++  A +V + M + 
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR---- 459
             +     F+ +++G C KG ++ +    ++M ++G+   G T+  L   L + G     
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 460 EDVLKFLQEK 469
           E VL+ +++K
Sbjct: 410 ERVLQEMEDK 419


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 178/378 (47%), Gaps = 15/378 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
            Y ++++ + KI       DL+  M   +  + NV  +  I+    +  +  +A   F  
Sbjct: 221 TYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           MQ+ G+  +L  +N ++   C S     A+++   M +R I PD  TY+ L+  + K+  
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E++ EM+  G  P+ +TY  M+D  CK  R+D A  +   M +  C P    ++ 
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNT 400

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y    RI+D ++   EM + G++AD   YN LI  F           +L++M S G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------CEADADTYTMMIKM 383
           + P+  TC+ +L+GL   G+  +A  +F+ M K              E D  TY ++I  
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
               G+  +A ++++ M  +  +P   T+S +I+GLC +  + ++  + + M  K   P+
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 444 GETFGKLRKLLIKEGRED 461
             TF  L     K GR D
Sbjct: 581 VVTFTTLINGYCKAGRVD 598



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTF 137

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+  ++  FN LL  LC    V +A  +F  M +    P+  T++ L+ G  ++
Sbjct: 138 GKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCRE 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFI 272
             +  A  +   M++ G  P  +TYG +VD +CK G    AL +++ M+  +   P   I
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVI 257

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS ++ +   + R  DA + F EM++ GI  D+  YN++I  FC + ++ +  ++L++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + ++P+  T N ++N  +  G+  EA  ++  M+ +    +  TY+ MI  FC+   L+
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLD 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  ++  M  K   P++ TF+ LI+G C    + D   LL +M E G+     T+  L
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+SL K  ++    +L   M+ K +  ++ T+  ++  +    +  +A    
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M +  ++ ++  +N L++A  K     +A+E++D M  R  IP++ TYS +++G+ K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   GC+P+++T+  ++D  C A R+D+ + ++  M  T     +  Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H + +   +  A+D   EM  +G+  D+   + L+   C   K K+   + K M  
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 334 K-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
                       GV P+ +T NI+++GLI  G+  EA  ++  M  +    D  TY+ MI
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   L++A +++  M  K F P++ TF+ LING C  G V D   L  +M  +GI 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 442 PSGETF 447
            +  T+
Sbjct: 614 ANAITY 619



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 13/281 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I+     ++     +L++ M  T  + +  T+  ++  +  V  +  A+     M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK------------DRFIPDSKTYSI 205
              G+  ++   + LL  LC +  ++ A E+F  M+            +   PD +TY+I
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P    ++ L++ Y    R++D ++ F EM + GI+A+   Y  LI  F K        
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            + ++M S GV P++ T   +L GL  + E   A  +  ++
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 3/329 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-D 199
           +  ++ +E+A+  F+ M +     ++  F  L+  + + +       ++  M+ + I  D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +++IL++ +     LP A   F ++   G +PD+VT+  ++  LC   RV EAL +  
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M  T CRP    ++ L++    E RI +AV     M ++G+      Y  ++   CK  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIG 233

Query: 320 KFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              +   +L+ M     + PN    + I++ L   G   +A  +F  M  K    D  TY
Sbjct: 234 DTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             MI  FC  G    A ++ + M  ++  P + T++ LIN    +G   ++  L ++M+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           +GI P+  T+  +     K+ R D  + +
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 3/268 (1%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +M+ +   P +V +  ++ V+ +  R D  + + + M+   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R   + +++L+  +   +++  A+ TF ++ K G+  DV  +N L+   C  ++     
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
            +   M      PN  T   ++NGL   G   EA  +  RM++   +    TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 385 CQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M ++   IP++  +S +I+ LC  G  SD+  L  +M EKGI P 
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  D  + LQE +
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEML 317



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 24/219 (10%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L+AA  + + M+SS   P +V  DT LD  G+  + ++ +D LE F+          + +
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKL-KDALEMFK--------VMQKS 494

Query: 88  EKQQNYEH-------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
           +K  +  H        V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++ 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIP 198
              +  +++EA   F+ M     + N+  F  L++  CK+  V    E+F  M  R  + 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++ TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 186/386 (48%), Gaps = 6/386 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF         +     Y SM++ LAK   + +   L++ MR + + ++ +    ++
Sbjct: 117 ALAFFNHVLPSLPTDSLPELYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALI 176

Query: 139 RKYARVQKVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           R+Y R     EA   F  M++YG    + A    LL AL K +   +AQ +FD  K  F 
Sbjct: 177 RRYVRAGMSSEASDLFRSMEEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKSVFT 236

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD   Y+ L+  W +   L +A ++F EM   G  P++ TY  ++D + +AG+V  A  +
Sbjct: 237 PDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQEL 296

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M  + C P +  ++ ++  +    R E  +    +M + G   D+  YN L+   C 
Sbjct: 297 LCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCG 356

Query: 318 ANK--FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
             +       ++L  M +KG  P+  T N +L  ++  G  D A++++ RM +L C+ + 
Sbjct: 357 KGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNV 416

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++K+F +   ++   ++ K M  +   P+++T+  LI   C +G    +   L +
Sbjct: 417 ITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLRE 476

Query: 435 MIE-KGIRPSGETFGKLRKLLIKEGR 459
           M+E K ++P    +  +  LL K G+
Sbjct: 477 MLEVKSLKPKKPVYDMVLVLLRKAGQ 502



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 145/353 (41%), Gaps = 44/353 (12%)

Query: 133 TFCIIMRKYA--RVQKVEEAVYTFNVMQKYGVTQNLAA-FNGLLSALCKSKNVRKAQEIF 189
           TF +  R  A  R     EA+  FN +     T +L   +  ++  L K  +   A+ + 
Sbjct: 98  TFHVFGRLLALRRGIPFPEALAFFNHVLPSLPTDSLPELYASMMDLLAKHHHFPLARHLL 157

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PDIVTYGIMVDVLCK 247
           D M+ R IP  S+    L+  + +      A ++FR M + G   PD      ++  L K
Sbjct: 158 DEMRKRSIPISSQVILALIRRYVRAGMSSEASDLFRSMEEYGGGVPDPAVLASLLGALSK 217

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
                EA  +  S  S V  P   +Y+ LVH +     ++ A   F EM++ GI+ +V  
Sbjct: 218 KRLASEAQALFDSYKS-VFTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYT 276

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y A+I A  +A +      +L  M   G  PN+ T N I+   +  G +++  +V  +M 
Sbjct: 277 YTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMR 336

Query: 368 KL-CEADADTYTMMIKMFCQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           +L C+ D  TY  +++  C  G+  L+ A K                             
Sbjct: 337 QLGCDPDIITYNFLMETHCGKGQSNLDAAMK----------------------------- 367

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
                 LL  MI KG  P   TF  + KL++  G  D    L E+M  L  +P
Sbjct: 368 ------LLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKP 414


>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14820, mitochondrial-like [Glycine max]
          Length = 492

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 201/427 (47%), Gaps = 49/427 (11%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           ++  LD+ G+R+S ++V D+L++F++A   AF FF WA K+  ++H  R Y+ M+  L +
Sbjct: 83  MEAVLDECGVRLSHDLVVDMLQRFKHAXP-AFRFFCWAGKRPGFDHDSRTYNCMMCVLGR 141

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            RQ++ M  ++  M    +L +ETF + ++ +A   + ++A   F++M+KY     +   
Sbjct: 142 TRQFETMVAMLEEMGEMGLLTMETFSVAIKTFAEANQRKKAAGIFDLMKKYEFKVGVDVI 201

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N LL +L  +K  ++AQ +F+                             + ++ EM+D 
Sbjct: 202 NFLLDSLSAAKLGKEAQAVFE-----------------------------KRVWNEMIDR 232

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  PDIV + +M++ L K  + D A  + + M +    P    Y++++  +  +  + + 
Sbjct: 233 GFKPDIVAHNVMLEGLLKCKKSD-AXKLFEIMKAKCPSPNVRSYTIMIQDFCKQKMMGEV 291

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           V+   EM       D A+Y  LI  F    K   VY +LK+M  +G +P+  T N ++  
Sbjct: 292 VEYIDEMVDRECQPDAALYTCLITGFGXKKKMDMVYNLLKEMRKRGCSPDGGTYNALIKL 351

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              +   D+A R++++M +   +    TY M+++ +      E    +W  M  K   P 
Sbjct: 352 XTSQQMPDDAVRIYKKMSQSGIKPTIHTYNMIMRSYFVTKNYEIGHAIWDXMHQKGCCPD 411

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            +++SV I                  M+EKG++     + K    + K G   +L+ L  
Sbjct: 412 DNSYSVYIG-----------------MLEKGMKAPQLDYNKCASDISKIGNAVILEELAR 454

Query: 469 KMNLLVK 475
           KMN + K
Sbjct: 455 KMNFVGK 461


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 164/332 (49%), Gaps = 2/332 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPD 199
           Y R   +  A   F +M   G  +    +  LL  LC +  VR+A  +F  M+ D   PD
Sbjct: 117 YCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
              Y+ ++ G         A  +  + +  G  P++V Y  ++D  C  G ++ A+ + +
Sbjct: 177 PHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFE 236

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            MD   C P    Y+ L+  +    +++ A+  F  M   G++ +V  Y ALI   C   
Sbjct: 237 RMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDG 296

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
           +    YR+L+ M + G+ PN  TC+++++ L       EA  +   +I K  + +   YT
Sbjct: 297 QLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYT 356

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C+ G    A ++ + +  + F+P  HT+S LI+GLC +  +S++ ++L+DM+EK
Sbjct: 357 SLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEK 416

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G++PS  T+  +   L++E   D  K + +KM
Sbjct: 417 GVQPSPVTYTIIIDELVREVGADGSKKILDKM 448



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 160/334 (47%), Gaps = 37/334 (11%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   N+  +N L+   C   ++  A ++F+ M  +   P+ +TY+ L+ G+ K   L RA
Sbjct: 207 GFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRA 266

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +F  MVD G  P++VTY  ++   C  G++D A  +++SM+++   P  +  SVL+  
Sbjct: 267 MMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDA 326

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                R+ +A      + + GI  +  +Y +LI   CKA +F    R+++ + S+G  P+
Sbjct: 327 LCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPD 386

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIK-----------------LCEADAD------- 375
           + T + +++GL  + E  EA  V   M++                 + E  AD       
Sbjct: 387 AHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILD 446

Query: 376 ------------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
                       TYT+ ++ +C  G +E A  +  +M      P++ T++ LI G  + G
Sbjct: 447 KMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLG 506

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           + S +    + M+  G +P+ E++  L +LLIK+
Sbjct: 507 LTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKK 540



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 169/382 (44%), Gaps = 19/382 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+      Q    + L+ +M    ++  E  C +++    + ++V EA    
Sbjct: 281 NVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLL 340

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             + + G+  N   +  L+  LCK+     A  +   +  + F+PD+ TYS L++G  + 
Sbjct: 341 GSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQ 400

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +  +M++ G  P  VTY I++D L +    D +  I+  M +   +P  F Y
Sbjct: 401 KELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTY 460

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++ V +Y  E R+EDA    L M  +G+  ++  YNALI  +         +   K M +
Sbjct: 461 TIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVA 520

Query: 334 KGVAPNSRTCNIILNGLIGR----------------GETDEAYRVFRRMIKL-CEADADT 376
            G  PN  +  ++L  LI +                 E    + +   M+KL   ++ D 
Sbjct: 521 NGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDI 580

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y   +   C+   L++A  +   M+     PS   ++ +I   C   +++++   ++ M+
Sbjct: 581 YNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMV 640

Query: 437 EKGIRPSGETFGKLRKLLIKEG 458
           + G  P  E++  +   L +EG
Sbjct: 641 KSGYIPQLESYRHIISSLCEEG 662



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I+ L K  ++     L+  + ++  + +  T+  ++    R +++ EA+   + M 
Sbjct: 355 YTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM 414

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           + GV  +   +  ++  L +      +++I D M    I PD  TY+I +  +  +  + 
Sbjct: 415 EKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRME 474

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   MVD G  P++VTY  ++      G   +A    K M +  C+P    Y+VL+
Sbjct: 475 DAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLL 534

Query: 278 HTY----GVENRIEDAVDTFL------------EMEKNGILADVAMYNALIGAFCKANKF 321
                     N   ++V  +             EM K  + +++ +YN  + + C+ ++ 
Sbjct: 535 RLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRL 594

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMM 380
                +L +M S  + P+      I+          EA      M+K       ++Y  +
Sbjct: 595 DEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHI 654

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+ G ++ A +V+  M  K +      + +LI+GL  KG V++   LL  M EK  
Sbjct: 655 ISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNY 714

Query: 441 RPSGETFGKL 450
           RPS   + +L
Sbjct: 715 RPSDALYARL 724



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)

Query: 325 YRVLKDMNS---KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMM 380
           +R+L DM S   +  A N RT   ++N     G+   + R    +++   A D+  YT  
Sbjct: 54  HRMLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSF 113

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  +C+ G L  A +++  M L+  + +  T++ L++GLC  G+V ++  +   M   G 
Sbjct: 114 VVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGC 173

Query: 441 RPSGETFGKLRKLLIKEGR 459
            P    +  +   L   GR
Sbjct: 174 APDPHVYATMVHGLCGAGR 192



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 106 SLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           S+ KI + + +  L+  M   ++ + ++ +   +    RV +++EA      MQ   +T 
Sbjct: 552 SIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTP 611

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
           +   +  +++  C+ K + +A    D M K  +IP  ++Y  ++    ++ ++  A+++F
Sbjct: 612 SEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVF 671

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            +M+    N + + + I++D L + G V E   ++  M+    RP+  +Y+ L       
Sbjct: 672 GDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLT------ 725

Query: 284 NRIEDAVD 291
            +I DA D
Sbjct: 726 GKITDAND 733



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 73/187 (39%), Gaps = 4/187 (2%)

Query: 144 VQKVEEAVYTFNVMQ---KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPD 199
           + K+ E  Y   +++   K  +   +  +N  L++LC+   + +A+ +   M+     P 
Sbjct: 553 IWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPS 612

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
              Y+ ++    +   L  A      MV +G  P + +Y  ++  LC+ G +  A  +  
Sbjct: 613 EDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFG 672

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M S         + +L+     +  + +       ME+       A+Y  L G    AN
Sbjct: 673 DMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKITDAN 732

Query: 320 KFKNVYR 326
             + + R
Sbjct: 733 DIQEIAR 739


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           LV +M      +V T+  +MR   +  KV+EA      M   G   +   +N ++   CK
Sbjct: 172 LVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCK 231

Query: 179 SKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
              +++A E+  D +   F+PD  TY  L+ G   + ++ RA E+F E       PD+V 
Sbjct: 232 RDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVV 291

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  +V  LC+ G +  AL ++  M    C P  + Y+++++       I DA     +  
Sbjct: 292 YNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAI 351

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G L DV  +N +I  +CK  K  +  ++++ M   G+AP++ T N +LNGL   G+  
Sbjct: 352 VKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAK 411

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E    F  MI K C  +A TY ++I+ FC+  +LE+A  V   M     +P   +F+ LI
Sbjct: 412 EVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLI 471

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +G C  G +  + +L + + EKG   + +TF  L
Sbjct: 472 HGFCRNGDLDGAYLLFQKLDEKGYSATADTFNIL 505



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 166/329 (50%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+C ++        VE A+  FN  Q   +  +L  +N L+  LC+   +  A ++ + M
Sbjct: 256 TYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEM 315

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +D   PD  TY+I++ G  K  N+  A  +  + +  G  PD+ T+  M+D  CK  ++
Sbjct: 316 VEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKL 375

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D AL +V+ M      P +  Y+ +++      + ++  +TF EM   G   +   YN L
Sbjct: 376 DSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNIL 435

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FCK N+ +    V+  M+  G+ P++ + N +++G    G+ D AY +F+++  K  
Sbjct: 436 IENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGY 495

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            A ADT+ ++I  +     ++ A K++  M  K + P ++T+ VL++G C    V  + V
Sbjct: 496 SATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYV 555

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            L +M+ KG  PS  TFG++   L    R
Sbjct: 556 HLAEMVSKGFVPSMATFGRVLNSLAMNHR 584



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 169/346 (48%), Gaps = 3/346 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I  L      +   +L N  + K +  ++  +  +++   R   +  A+   N M 
Sbjct: 257 YCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMV 316

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G   ++  +N +++ LCK  N+  A  +  D +   ++PD  T++ +++G+ K   L 
Sbjct: 317 EDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLD 376

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++   M   G  PD +TY  +++ LCKAG+  E     + M    CRP +  Y++L+
Sbjct: 377 SALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILI 436

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +   N++E+A    + M ++G++ D   +N LI  FC+       Y + + ++ KG +
Sbjct: 437 ENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS 496

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
             + T NI++     +     A ++F  MI K  + D  TY +++   C+   +++A+  
Sbjct: 497 ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVH 556

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              M  K F+PSM TF  ++N L     VS++  ++  M+  G+ P
Sbjct: 557 LAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 1/329 (0%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R     +V TF  ++    +   + E+      + K G++ N    N  +  LC+   +
Sbjct: 107 LRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRL 166

Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
            +A  + + M     PD  TY+ L+ G  KD  +  A +  R M++ GC PD  TY  ++
Sbjct: 167 EEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTII 226

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D  CK   + EA  ++K        P    Y  L++    E  +E A++ F E +   + 
Sbjct: 227 DGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLK 286

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+ +YN+L+   C+     +  +V+ +M   G  P+  T NI++NGL   G   +A  V
Sbjct: 287 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVV 346

Query: 363 FR-RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               ++K    D  T+  MI  +C+  +L+ A ++ + M +    P   T++ ++NGLC 
Sbjct: 347 MNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK 406

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            G   +     E+MI KG RP+  T+  L
Sbjct: 407 AGKAKEVNETFEEMILKGCRPNAITYNIL 435



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 166/350 (47%), Gaps = 5/350 (1%)

Query: 126 KRMLNVETFC--IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           KR ++V  F   I +R      ++EEAV     M  Y +  ++  +N L+  LCK   V+
Sbjct: 143 KRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQ 201

Query: 184 KA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +A Q +   M    IPD  TY+ +++G+ K   L  A E+ ++ +  G  PD VTY  ++
Sbjct: 202 EAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLI 261

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + LC  G V+ AL +     +   +P   +Y+ LV     +  I  A+    EM ++G  
Sbjct: 262 NGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCH 321

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+  YN +I   CK     +   V+ D   KG  P+  T N +++G   R + D A ++
Sbjct: 322 PDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQL 381

Query: 363 FRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             RM     A DA TY  ++   C+ G+ ++  + ++ M LK   P+  T+++LI   C 
Sbjct: 382 VERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 441

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
              + ++  ++  M + G+ P   +F  L     + G  D    L +K++
Sbjct: 442 INQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLD 491



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 10/342 (2%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           +++FCI  R +        A+     + + G      A+  ++  L    +   A+ +FD
Sbjct: 52  IKSFCITGRPHV-------ALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFD 104

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M  R + PD  T++ +L    +  ++  +  +  +++  G + +  T  I +  LC+ G
Sbjct: 105 EMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGG 164

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R++EA+ +V+SMD+ +  P    Y+ L+     ++++++A      M   G + D   YN
Sbjct: 165 RLEEAVALVESMDAYIA-PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYN 223

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIK 368
            +I  +CK +  +    +LKD   KG  P+  T   ++NGL   G+ + A  +F     K
Sbjct: 224 TIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAK 283

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             + D   Y  ++K  C+ G +  A +V   M      P + T++++INGLC  G +SD+
Sbjct: 284 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDA 343

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            V++ D I KG  P   TF  +     K  + D    L E+M
Sbjct: 344 AVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERM 385



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 152/329 (46%), Gaps = 3/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            +C ++R         +A + F+ M +  V  ++A FN +L ALC+  ++ ++  +   +
Sbjct: 82  AYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKV 141

Query: 193 KDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R +  +K T +I + G  +   L  A  +   M D    PD+VTY  ++  LCK  +V
Sbjct: 142 LKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKV 200

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA   ++ M +  C P  F Y+ ++  Y   + +++A +   +    G + D   Y +L
Sbjct: 201 QEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSL 260

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I   C     +    +  +  +K + P+    N ++ GL  +G    A +V   M++  C
Sbjct: 261 INGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGC 320

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY ++I   C+ G +  A  V     +K ++P + TF+ +I+G C +  +  +  
Sbjct: 321 HPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQ 380

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L+E M   GI P   T+  +   L K G+
Sbjct: 381 LVERMWMYGIAPDAITYNSVLNGLCKAGK 409



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 123/272 (45%), Gaps = 1/272 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P +  Y+ +++         +A +++  M+  G  PD  T+ + +   C  GR   AL +
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++S+    C      Y  +V          DA   F EM +  +  DVA +N ++ A C+
Sbjct: 68  LRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQ 127

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
                    +L  +  +G++ N  TCNI + GL   G  +EA  +   M      D  TY
Sbjct: 128 KGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTY 187

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             +++  C+  ++++A +  + M  +  IP   T++ +I+G C + ++ ++  LL+D I 
Sbjct: 188 NTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIF 247

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           KG  P   T+  L   L  EG  E  L+   E
Sbjct: 248 KGFVPDRVTYCSLINGLCAEGDVERALELFNE 279



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++  + ++ ++EEA      M + G+  +  +FN L+   C++ ++  A  +F
Sbjct: 428 NAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLF 487

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             + ++ +   + T++IL+  +    N+  A +IF EM+  G  PD+ TY ++VD  CKA
Sbjct: 488 QKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKA 547

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
             VD A   +  M S    P+   +  ++++  + +R+ +AV     M + G++ +V
Sbjct: 548 ANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEV 604



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 1/177 (0%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+  G       YNA++ A          ++V   M S GVAP++RT  + +      G 
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
              A R+ R +  + C+     Y  +++     G    A  ++  M  +   P + TF+ 
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNN 120

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +++ LC KG + +S  LL  ++++G+  +  T     + L + GR +    L E M+
Sbjct: 121 VLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMD 177



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ-EIFD 190
           +TF I++  Y+    ++ A   F  M   G   +L  +  L+   CK+ NV +A   + +
Sbjct: 500 DTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAE 559

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
            +   F+P   T+  +L     +  +  A  I   MV  G  P++V
Sbjct: 560 MVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEVV 605


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 212/479 (44%), Gaps = 58/479 (12%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           K IS   LS       TA   S    +P  + D L + +N  T A     WA KQ N+  
Sbjct: 29  KPISNSTLSFASTQQHTATLSSNF--TPAQLLDTLRR-QNDETAALRLLSWASKQPNFRP 85

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV--- 151
           +   Y  ++  L K+  +  M D++  M+     ++     I +  YA+ +  EE +   
Sbjct: 86  NSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIV 145

Query: 152 ---------------YTF------------------NVMQKYGVTQNLAAFNGLLSALCK 178
                          Y F                  + M   G+  +++ FN L+ ALCK
Sbjct: 146 EVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCK 205

Query: 179 SKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           +  +R A  + + M     +PD KT++ L++G+ ++ N+  A  +  +M+D GC    VT
Sbjct: 206 AHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVT 265

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTV----------------CRPTSFIYSVLVHTYG 281
             ++V   CK GR++EAL  +  M +                  C+P  F Y++L+ +  
Sbjct: 266 VNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLC 325

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              ++++A+    EME +G   +V  YN LI  FCK  K +    +   M  +G++ NS 
Sbjct: 326 YRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSV 385

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N +++GL       EA ++  +MI +  + D  TY  M+  FC+ G+++KA  + + M
Sbjct: 386 TYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTM 445

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
                 P + T+  LI GLC  G V  +  LL  +  KG+  +   +  + + L K  R
Sbjct: 446 TSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKR 504



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA------QEIFDCMKDRFIPDSKTY 203
           A+  +N M+  G   +   +N L+ +LC    +++A       EI  C ++       TY
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVI-----TY 352

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + L++G+ K+  +  A EIF +M   G + + VTY  ++D LCK+ RV EA  ++  M  
Sbjct: 353 NTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIM 412

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              +P  F Y+ ++  +  E  I+ A D    M  NG   D+  Y  LIG  CKA + + 
Sbjct: 413 EGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEV 472

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIK 382
             R+L+ +  KG+       N ++  L  R  T EA R+FR M  K    DA TY ++ +
Sbjct: 473 ASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFR 532

Query: 383 MFCQ-GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
                GG + +A      M  K F+P   +F +L  GLC   +  D+ + L D++
Sbjct: 533 GLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSM-EDTLIKLVDLV 586



 Score = 45.8 bits (107), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%)

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D   Y  ++ +   G +L+    V   M  K   P + TF++LI  LC    +  + +++
Sbjct: 157 DTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVM 216

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           E+M   G+ P  +TF  L +  I+EG  D    ++E+M
Sbjct: 217 EEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQM 254


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 3/312 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++   ++   V +A+     M + G++ ++  FN +L  LCK + +  A  +F   
Sbjct: 475 TYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 534

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +R   P+  TYS L++G  K   +  A ++  +MV+ GC  + VTY  +VD L K GR+
Sbjct: 535 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 594

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A+ +++ M    C P +  Y+ L+  +    R+ +AV    EM + G    V  Y  L
Sbjct: 595 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 654

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--L 369
               C++ +F     +L  M ++G APN+ T + I++GL   G   EA   F +M +  +
Sbjct: 655 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 714

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
                  Y+ +I   C+ G +++A++  + M     IP + TFS+LINGLCD G +    
Sbjct: 715 VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 774

Query: 430 VLLEDMIEKGIR 441
            L   M E+G +
Sbjct: 775 ELFCGMAERGCK 786



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 184/409 (44%), Gaps = 44/409 (10%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           Y ++++ L K+ +   M D V  +R  R    + +  T+  ++  + + Q++ EAV    
Sbjct: 581 YSTVVDGLLKVGR---MEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLR 637

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M + G   ++  +  L   LC+S    +A EI D M  R   P++ TYS +++G  K  
Sbjct: 638 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAG 697

Query: 215 NLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +  A   F +M  D    P ++ Y  ++D LCKAGR+DEA   ++ M      P    +
Sbjct: 698 RVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTF 757

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S+L++      RI+  ++ F  M + G  AD+  YNA+I A+C   +F   Y +L++M +
Sbjct: 758 SILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKT 817

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC----------------------- 370
            G+A N+ T  I++  L G    DEA   F  + + C                       
Sbjct: 818 HGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQAL 877

Query: 371 -----------EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
                        DA  Y  ++    + G  E A K+ + M+ +   P + T++++I+GL
Sbjct: 878 ELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGL 937

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
                +  +C   E+M+ K ++P    +  L     K  + +D  K L+
Sbjct: 938 SKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR 986



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 191/425 (44%), Gaps = 35/425 (8%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           AF  F+ A  Q  +  +V  Y ++I+ L +  +      L+  M  +    N  T+  ++
Sbjct: 20  AFTAFRKA-IQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLV 78

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
                  + +EA      M   G    L  F  ++  LCK   +  A  + D M DR F+
Sbjct: 79  NALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFV 138

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD + +++LL    +   +  A   F++++  G  PD VTY  MVD L KAGR++ A  +
Sbjct: 139 PDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMV 198

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ +  +   PT F +++ V        +  A + F  M + G+  +   Y+ALI   CK
Sbjct: 199 LQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258

Query: 318 ANKFKNVYRVLKDMNSKG-----------------------------VAPNSRTCNIILN 348
           A K      +L+D NS+                                PN    N ++N
Sbjct: 259 AGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMN 318

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM-KLKRFI 406
           GL      DEA+ +F  M +  C AD  TY +++K  C+   + +A++  + M + +   
Sbjct: 319 GLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCS 378

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIE-KGIRPSGETFGKLRKLLIKEGREDVLKF 465
           P++ TFS LI GLC+ G V+ +  + E M+  +GI P+  T+  L + L K G    L+ 
Sbjct: 379 PNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQ 438

Query: 466 LQEKM 470
             E+M
Sbjct: 439 CFEQM 443



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 182/435 (41%), Gaps = 62/435 (14%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQK 146
           K+      V  Y+ +++ L K+R+    +  V  MR       NV TF  +++      +
Sbjct: 337 KESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGR 396

Query: 147 VEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---------- 195
           V +A   +  M    G++ N   +  LL  LCK+ + R+ ++ F+ M +R          
Sbjct: 397 VNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPI 456

Query: 196 ------FI------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
                 F+      P   TY+ L+ G  K   +  A  +   M+++G +PD++T+  ++D
Sbjct: 457 HSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLD 516

Query: 244 VLCKAGRV-----------------------------------DEALGIVKSMDSTVCRP 268
            LCK  R+                                   DEAL ++  M    CR 
Sbjct: 517 GLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRA 576

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            +  YS +V       R+EDAV    +M   G L D   YN LI  F K  + +    +L
Sbjct: 577 NTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 636

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQG 387
           ++M   G  P+  T   + +GL   G  DEA  +   M  + C  +A TY+ ++   C+ 
Sbjct: 637 REMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA 696

Query: 388 GELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           G + +A   ++ M     + P +  +S LI+GLC  G + ++   LE MI  G  P   T
Sbjct: 697 GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVT 756

Query: 447 FGKLRKLLIKEGRED 461
           F  L   L   GR D
Sbjct: 757 FSILINGLCDAGRID 771



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 2/270 (0%)

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY++L+ G  K   +  A   FR+ +  G  P +VTY  ++D LC+   VD+   +++ M
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C P +  Y+ LV+    + R ++A      M  NG   ++  +  +I   CK  + 
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMM 380
           +  +RV+ +M  +G  P+     ++L+ L   G  DEA+  F++++ +    DA TY  M
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +    + G LE A  V + +      P++ TF++ ++GL   G ++ +    + M + G+
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 441 RPSGETFGKLRKLLIKEGREDV-LKFLQEK 469
            P+  T+  L   L K G+ D+ L  L++K
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIALGLLRDK 272



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 177/411 (43%), Gaps = 44/411 (10%)

Query: 90   QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
            +  +  SV  Y ++   L +  ++    ++++ M  +    N  T+  I+    +  +V 
Sbjct: 641  EAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVT 700

Query: 149  EAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
            EA+  F  M +  V   ++ A++ L+  LCK+  + +A E  + M +   IPD  T+SIL
Sbjct: 701  EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSIL 760

Query: 207  LEGWGKDPNLPRAREIFREMVDTGCNPDI------------------------------- 235
            + G      +    E+F  M + GC  DI                               
Sbjct: 761  INGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI 820

Query: 236  ----VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
                VT+GI++  LC   R+DEA+    S+    CR     Y+ L+ +     R E A++
Sbjct: 821  AKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED-CR-DEISYNTLITSLVASRRSEQALE 878

Query: 292  TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
                M  +G   D   Y  ++    KA   +   ++L++M S+G +P+ RT  I+++GL 
Sbjct: 879  LLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLS 938

Query: 352  GRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
               +   A   F  M+ K  + DA  Y+ +I  FC+  +++ A   WK ++     P++ 
Sbjct: 939  KAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDA---WKLLRSSGIEPTIT 995

Query: 411  TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             +S +++ LC       +  ++ +M  K   P    +  L    + EGR D
Sbjct: 996  MYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVD 1046



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 2/271 (0%)

Query: 166 LAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +N L++ LCK+  V  A   F   ++  F P   TYS +++G  +D  + +  ++  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM   GC P+ VTY  +V+ L   GR  EA  +++ M +  C P    + +++     E 
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            IE A     EM   G + DV ++  L+ A C+  +    +   + +   G  P++ T N
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 345 IILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +++GL   G  + A  V + + +        T+T+ +    + G L  A++ +  M   
Sbjct: 181 TMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT 240

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
              P+  T+  LI+GLC  G +  +  LL D
Sbjct: 241 GVSPNTVTYDALIDGLCKAGKLDIALGLLRD 271



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 39/355 (10%)

Query: 78   TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCI 136
            T A  +F+   + +     V AY ++I+ L K  +    ++ +  M R  R+ +V TF I
Sbjct: 700  TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 137  IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------ 190
            ++       +++  +  F  M + G   ++ A+N +++A C       A  + +      
Sbjct: 760  LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG 819

Query: 191  ---------------CMKDRF---------IP----DSKTYSILLEGWGKDPNLPRAREI 222
                           C  DR          IP    D  +Y+ L+          +A E+
Sbjct: 820  IAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALEL 879

Query: 223  FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
             R MV  G +PD   Y  ++D L KAG  + A  +++ M S    P    Y++++     
Sbjct: 880  LRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSK 939

Query: 283  ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
              ++  A D F EM +  +  D  +Y++LI AFCKA+K  + +++L+   S G+ P    
Sbjct: 940  AKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR---SSGIEPTITM 996

Query: 343  CNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
             + +++ L     TD+A  V R M  K CE     +T +   +   G +++A K+
Sbjct: 997  YSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKL 1051



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 119/273 (43%), Gaps = 42/273 (15%)

Query: 97   VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
            + AY++MI +     ++   + L+  M+T  +  N  T  I+++      +++EAV  F+
Sbjct: 789  IYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFH 848

Query: 156  VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM----------------------- 192
             + +    ++  ++N L+++L  S+   +A E+   M                       
Sbjct: 849  SIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAG 906

Query: 193  ------------KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                        + R   PD +TY+I++ G  K   LP A + F EM+     PD + Y 
Sbjct: 907  SPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYS 966

Query: 240  IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             ++D  CKA +VD+A  +++S   +   PT  +YS +V +       + A++   EM+  
Sbjct: 967  SLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSK 1023

Query: 300  GILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
                 + ++ +L  A+    +     +++ D+ 
Sbjct: 1024 NCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI   CKA +  + +   +     G  P   T + +++GL    E D+  ++   M 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            + C  +A TY  ++      G  ++AF + + M      P + TF ++I GLC +G + 
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIE 123

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            +  ++++M+++G  P  E    L   L + GR D   F  +++ L+   P
Sbjct: 124 AAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTP 174



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%)

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY ++I   C+ G +  AF  ++      F P++ T+S +I+GLC    V   C LLE+M
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             +G  P+  T+  L   L+ +GR      L E+M
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERM 97


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 30/458 (6%)

Query: 29  TEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
           +E +D +  +  I LS P      +L +    ++P  V  +   F      A  FF W  
Sbjct: 35  SEPVDLSAQLLSI-LSRPNWQKHPSLRKLLPSLTPSHVSSLF-AFNLDPQTALSFFNWIA 92

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQI--------------MWDLVNAMRTKRMLNVE-- 132
            +  ++H+V +Y SM+  L + R   +              + D++  +   R +N +  
Sbjct: 93  LRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGE 152

Query: 133 --------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
                    +  I+   ++   ++E    +  +    ++ N+  FN +++  CK  NV +
Sbjct: 153 FKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVE 212

Query: 185 AQEIF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           A E++    ++    PD+ TY+ L+ G  ++  +  A E+F  M   GC  + V+Y  ++
Sbjct: 213 A-ELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
             LC+AGR++EAL +   M    C PT   Y+VL++      R  +A++ F EM++ G  
Sbjct: 272 HGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            +V  Y  LI   CK NK     ++L +M+ KG+ P+  T N +++G    G  D+A+ +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 363 FRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M    C  +  TY  +I   C+  ++ KA  +   M  ++  PS+ T++ LI+G C 
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              +  +  LL  M E G+ P   T+      L KEGR
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGR 489



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 178/337 (52%), Gaps = 3/337 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           ++ EA+  F  M +      +  +  L+ AL  S    +A  +F+ MK++   P+  TY+
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L++G  K+  +  AR++  EM + G  P +VTY  ++D  CK G +D+A  I+  M+S 
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P +  Y+ L+     + ++  A+    +M +  +   +  YN+LI   CK N  ++ 
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESA 458

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           YR+L  MN  G+ P+  T ++ ++ L   G  +EA  +F  +  K  +A+   YT +I  
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +C+ G+++ A+ + + M     +P+ +T++VLI GLC +  + ++  L+  M+  G++P+
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 444 GETFGKLRKLLIKEGRED-VLKFLQEKMNLLVKEPLC 479
             T+  L   ++K+G  D  LK     ++L  +  +C
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVC 615



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 177/398 (44%), Gaps = 32/398 (8%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           S+  Y+S+I    K+   +  + L++ M    ++  + T+ + +    +  +VEEA   F
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + ++  GV  N   +  L+   CK   +  A  + + M  D  +P+S TY++L+EG  K+
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  +M+  G  P +VTY I++  + K G  D AL +   M S   +P    Y
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +H Y  +  +E+  D   +M + GIL D+  Y  LI  + +       +  LK M  
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 334 KGVAPNSRTCNIILNGLIGRGETDE-----------------------------AYRVFR 364
            G  P+    +I++  L       E                             A ++F 
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFE 737

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           +M++  C  D   Y  +I  FCQ   LE+A  +  +MK +   PS   ++ L++  C  G
Sbjct: 738 KMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLG 797

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           + +++  L++ M+E G+ P  E++  L   L  EG  +
Sbjct: 798 VYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNE 835



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V T+ +++   +   +  EA+  FN M++ G   N+  +  L+  LCK   + +A+++  
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLS 358

Query: 191 CMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M ++  IP   TY+ L++G+ K+  +  A EI   M    C P+  TY  ++  LCK  
Sbjct: 359 EMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKR 418

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +V +A+ ++  M      P+   Y+ L+H     N +E A      M +NG++ D   Y+
Sbjct: 419 KVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYS 478

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
             I   CK  + +    +   + +KGV  N      +++G    G+ D AY +  RM+  
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLND 538

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
            C  ++ TY ++I+  C+  ++++A  +   M      P++ T+++LI  +   G    +
Sbjct: 539 ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             +   M+  G +P   T+         +G  + +  +  KMN
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 165/375 (44%), Gaps = 41/375 (10%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I+   K+ +  + + L+  M     L N  T+ +++    + +K++EA      M 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
             GV   +  +  L+  + K      A ++F+ M    + PD  TY+  L  +     L 
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLE 631

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              ++  +M + G  PD+VTY +++D   + G    A   +K M  T C+P+ +I S+L+
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 278 HTYGVENRIED-----------------------------AVDTFLEMEKNGILADVAMY 308
                ENR+++                             A+  F +M ++G   DV++Y
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIY 751

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            ALI  FC+  + +    ++  M  +G++P+    N +L+     G   EA R+   M++
Sbjct: 752 GALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVE 811

Query: 369 -----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
                L E    +Y +++      G  EKA  V+  +    +      + VLI+GL  + 
Sbjct: 812 NGLLPLLE----SYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRD 867

Query: 424 IVSDSCVLLEDMIEK 438
           +V D C  L D++E+
Sbjct: 868 LV-DECSELIDIMEE 881



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 1/196 (0%)

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +PT   Y+ ++ +      I++    +LE+  N I  ++  +NA++  +CK         
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
               +   G+ P++ T   ++ G       D AY VF  M  K C+ +  +YT +I   C
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G + +A K++  M      P++ T++VLI  L   G   ++  L  +M EKG  P+  
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335

Query: 446 TFGKLRKLLIKEGRED 461
           T+  L   L KE + D
Sbjct: 336 TYTVLIDGLCKENKMD 351



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E A+  F  M ++G T +++ +  L++  C+ + + +AQ +   MK+R + P    Y+ L
Sbjct: 730 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSL 789

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L+   K      A  +   MV+ G  P + +Y ++V  L   G  ++A  +   + S   
Sbjct: 790 LDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGY 849

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                 + VL+      + +++  +    ME+    A   +  A +     AN  K    
Sbjct: 850 NYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAANSTKG--- 906

Query: 327 VLKDMNSKGVAPN 339
            L+D   +G++ N
Sbjct: 907 ALEDHELRGLSVN 919


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 237/498 (47%), Gaps = 40/498 (8%)

Query: 1   MIKVYHSRNKMISGCISFLR----RYN-SSEPSTEALDAAKS--------ISKI--MLSS 45
           M+K + +  +M S  +  LR     +N SSEP   +     S        +SKI  +LSS
Sbjct: 1   MLKHHKTSPRMASHALFSLRGSHQSFNLSSEPHPSSPLPISSTTNPFPELVSKISTILSS 60

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           PK    + L     ++ P  V ++L+  +N  ++   FF W  +++ ++H +  + SM+ 
Sbjct: 61  PKWEHSSELCHLSPKLKPHHVVNILQTHKNTDSV-LRFFFWISRRKFFKHDMSCFVSMLN 119

Query: 106 SLAKIRQYQ--------IMWDLVNAMRTKRM--------------LNVETFCIIMRKYAR 143
            L + R +         ++    N    KR+                + +F  ++ +  +
Sbjct: 120 RLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGK 179

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
              V+ A   +  M   G+  +L  FN +++ LCK   V++A+ I     +    P++ T
Sbjct: 180 FDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFT 239

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L+ G  ++ NL  A  +F  MV  GC+P+ VTY  +++ LC  GR++EA+ +++ M 
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                PT + Y++ + +        +AV+   +M+K G + ++  + ALI    +  KF+
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMI 381
               +   M + G+ P + T N ++N L   G  + A+ +F+ M+         TY  +I
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           K FC  G+++KA  ++  M      P++ T++ LI G C +G ++++  LLE M   G++
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 442 PSGETFGKLRKLLIKEGR 459
           P   T+ +L     + G+
Sbjct: 480 PDAWTYTELISGFSRGGK 497



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 163/327 (49%), Gaps = 5/327 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L    +++  + +   M +   L + +T+  I++ +  +  +++A+  F+ M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G + N+  +N L+   CK  N+  A  + + MK   + PD+ TY+ L+ G+ +   L
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +F  M++ G +P+ VTY  ++D      +VD+AL +   M  +   P+S  Y+V+
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   N I +A +   +M K G+L +V  Y + I   C+  +    +++  +M  +  
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY 618

Query: 337 APNSRTCNIILNGLI--GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
            PN  T + ++ GL   GR E  E Y +  R+    CE + DTYT ++K  C  G   +A
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEA 678

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLC 420
            ++   M+ K   PS   +  L+ G C
Sbjct: 679 DQLVVSMQKKGLQPSEEIYRALLIGEC 705



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 8/367 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           +++ + ++I  L++  +++I   L + M    ++    T+  ++ +     + E A   F
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M  +G   +   +N ++   C   +++KA  IFD M K    P+  TY+ L+ G+ K 
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            NL  A  +   M   G  PD  TY  ++    + G+++ A  +   M      P    Y
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  Y    +++DA+  F +M ++G L     YN +I  F K N           M  
Sbjct: 521 TAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVK 580

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEK 392
           +G+ PN  T    ++GL   G T  A+++F  M K     +  TY+ +I   CQ G  E 
Sbjct: 581 QGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAED 640

Query: 393 AFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A       +L  +   P++ T++ L+ GLC +G   ++  L+  M +KG++PS E +   
Sbjct: 641 AEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIY--- 697

Query: 451 RKLLIKE 457
           R LLI E
Sbjct: 698 RALLIGE 704



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 175/421 (41%), Gaps = 41/421 (9%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           LAF  F    K     +SV  Y ++I  L    + +   D++  M  K +   V T+ I 
Sbjct: 255 LAFAMFDRMVKDGCDPNSV-TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIP 313

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRF 196
           +          EAV     M+K G   N+  F  L+S L +      A  ++  M  D  
Sbjct: 314 LVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL 373

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P + TY+ L+     +     A  IF+ M+  G  P   TY  ++   C  G + +A+ 
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV 433

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           I   M      P    Y+ L++ Y  +  + +A+     M+ NG+  D   Y  LI  F 
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFS 493

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-------- 368
           +  K ++   +   M   G++PN  T   I++G     + D+A  +F +M++        
Sbjct: 494 RGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 369 --------------LCEAD--------------ADTYTMMIKMFCQGGELEKAFKVWKYM 400
                         + EA+                TYT  I   C+ G    AFK++  M
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCV--LLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           + + + P+++T+S LI GLC +G   D+ +  LL  +   G  P+ +T+  L K L  EG
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673

Query: 459 R 459
           R
Sbjct: 674 R 674



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 16/337 (4%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFC---FFKWAEKQQNYEHSVRAYHSMIE---SLAKI 110
           +G++       +++  F   G L      F+   E   +  H    Y ++I+   +LAK+
Sbjct: 476 NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV--TYTAIIDGYFNLAKV 533

Query: 111 RQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
                + W +V    +  + + +T+ +++  +++   + EA      M K G+  N+  +
Sbjct: 534 DDALALFWKMV---ESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAR--EIFREM 226
              +  LC++     A +IF  M+ R + P+  TYS L+ G  ++     A    +   +
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              GC P++ TY  +V  LC  GR  EA  +V SM     +P+  IY  L+       ++
Sbjct: 651 THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           E A++ F  M+  G    ++ Y ALI A CK N  +    + + M  K    +     ++
Sbjct: 711 ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVL 770

Query: 347 LNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIK 382
           L+GL+  GETD   ++   M  + C  +  TY M+ +
Sbjct: 771 LDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAR 807



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+  MI + C+ G +++A  +  ++      P+  T++ LI G C    +  +  + + M
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           ++ G  P+  T+  L   L  EGR E+ +  L+E
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 184/371 (49%), Gaps = 4/371 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           +++  + ++  Y  +I+SL    + +   +L+  M  K ++ NV T+  ++  Y +   +
Sbjct: 350 EEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           E+A+    +M+   +  N   +N L+   CK +NV KA  + + M +R  +PD  TY+ L
Sbjct: 410 EDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSL 468

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G  +  N   A  +   M D G  PD  TY  M+D LCK+ RV+EA  +  S++    
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDV 528

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   +Y+ L+  Y    ++ +A     +M     L +   +NALI   C   K K    
Sbjct: 529 IPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATL 588

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           + + M    + P   T  I+++ L+  G+ D AYR F++M+    + DA TYT  I+ +C
Sbjct: 589 LEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G L+ A  +   MK     P + T+S LI G  D G  + + V+L+ M + G  PS  
Sbjct: 649 REGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQH 708

Query: 446 TFGKLRKLLIK 456
           TF  L K L++
Sbjct: 709 TFLSLIKHLLE 719



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 207/469 (44%), Gaps = 96/469 (20%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +VR Y  +I++L    +     +LV  M  K +  N+ T+ +++       K+E+A    
Sbjct: 322 TVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELL 381

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + G+  N+  +N L++  CK   +  A ++ + M+ R + P+++TY+ L++G+ K 
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR 441

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ +A  +  +M++    PD+VTY  ++D  C++G  D A  ++  M+     P  + Y
Sbjct: 442 -NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTY 500

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ +     R+E+A D F  +E+  ++ +V MY ALI  +CKA K    + +L+ M S
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS 560

Query: 334 KGVAPNSRTCNIILNGL-----------------------------------IGRGETDE 358
           K   PNS T N +++GL                                   +  G+ D 
Sbjct: 561 KNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDH 620

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE-------------------------- 391
           AYR F++M+    + DA TYT  I+ +C+ G L+                          
Sbjct: 621 AYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIK 680

Query: 392 ---------KAFKVWKYMKLKRFIPSMHTFSVLINGLCD------KGIVSDSCV------ 430
                     AF V K M      PS HTF  LI  L +      KG     CV      
Sbjct: 681 GYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMME 740

Query: 431 ------LLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQEK 469
                 LLE M+E G+ P+ +++ KL   + + G     E V   +Q+K
Sbjct: 741 FDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQK 789



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 198/415 (47%), Gaps = 37/415 (8%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAV 151
           Y+  +  Y++++ SLA+      M  +   M   ++  N+ T+  ++  Y +V  VEEA 
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEAN 238

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGW 210
              +++ + G+  +   +  L+   C+ K++  A ++F  M  +    ++  Y+ L+ G 
Sbjct: 239 QYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGL 298

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             +  +  A ++F +M D  C P + TY +++  LC + R  EAL +VK M+    +P  
Sbjct: 299 CVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNI 358

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+VL+ +   + ++E A +   +M + G++ +V  YNALI  +CK    ++   V++ 
Sbjct: 359 HTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVEL 418

Query: 331 MNSKGVAPNSRTCNIILNGLIGR----------------------------------GET 356
           M S+ + PN+RT N ++ G   R                                  G  
Sbjct: 419 MESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           D AYR+   M  +    D  TYT MI   C+   +E+A  ++  ++ K  IP++  ++ L
Sbjct: 479 DSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTAL 538

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I+G C  G V+++ ++LE M+ K   P+  TF  L   L  +G+      L+EKM
Sbjct: 539 IDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKM 593



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 173/319 (54%), Gaps = 3/319 (0%)

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTY 203
           ++++EA+  F  M+       +  +  L+ ALC S+   +A  +   M+++ I P+  TY
Sbjct: 302 RRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTY 361

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           ++L++       L +ARE+  +M++ G  P+++TY  +++  CK G +++AL +V+ M+S
Sbjct: 362 TVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMES 421

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              RP +  Y+ L+  Y   N +  A+    +M +  +L DV  YN+LI   C++  F +
Sbjct: 422 RNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS 480

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIK 382
            YR+L  MN +G+ P+  T   +++ L      +EA  +F  +  K    +   YT +I 
Sbjct: 481 AYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALID 540

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +C+ G++ +A  + + M  K  +P+  TF+ LI+GLC  G + ++ +L E M++  ++P
Sbjct: 541 GYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQP 600

Query: 443 SGETFGKLRKLLIKEGRED 461
           +  T   L   L+K+G  D
Sbjct: 601 TVSTDTILIHRLLKDGDFD 619



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 198/421 (47%), Gaps = 15/421 (3%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           +SP  V  +     +  T A  F  W  +   Y+HSV +Y S++  L       +++  +
Sbjct: 88  ISPSHVSSLFSLDLDPKT-ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK-I 145

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
             +  K   +V     ++    ++ K E     + ++        +  +N LL++L +  
Sbjct: 146 RLLMIKSCDSVADTLFVLDLCRKMNKDESFELKYKLI--------IGCYNTLLNSLARFG 197

Query: 181 NVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            V + ++++ + ++D+  P+  TY+ ++ G+ K  N+  A +    +V+ G +PD  TY 
Sbjct: 198 LVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYT 257

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++   C+   +D A  + K M    CR     Y+ L+H   VE RI++A+D F++M+ +
Sbjct: 258 SLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDD 317

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
                V  Y  LI A C + +      ++K+M  KG+ PN  T  ++++ L  + + ++A
Sbjct: 318 DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKA 377

Query: 360 YRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +  +M+ K    +  TY  +I  +C+ G +E A  V + M+ +   P+  T++ LI G
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKG 437

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN--LLVKE 476
            C +  V  +  +L  M+E+ + P   T+  L     + G  D    L   MN   LV +
Sbjct: 438 YCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496

Query: 477 P 477
           P
Sbjct: 497 P 497



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 184/387 (47%), Gaps = 22/387 (5%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S+I+   +   +   + L++ M  + ++ +  T+  ++    + ++VEEA   F+
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFD 521

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            +++  V  N+  +  L+   CK+  V +A  + + M  +  +P+S T++ L+ G   D 
Sbjct: 522 SLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDG 581

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  +MV     P + T  I++  L K G  D A    + M S+  +P +  Y+
Sbjct: 582 KLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYT 641

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
             + TY  E R++DA D   +M++NG+  D+  Y++LI  +    +  + + VLK M+  
Sbjct: 642 TFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDT 701

Query: 335 GVAPNSRTCNIILNGLIG------RG------------ETDEAYRVFRRMIKL-CEADAD 375
           G  P+  T   ++  L+       +G            E D    +  +M++     +A 
Sbjct: 702 GCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAK 761

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLED 434
           +Y  ++   C+ G L  A KV+ +M+ K  I PS   F+ L++  C     +++  +++D
Sbjct: 762 SYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDD 821

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRED 461
           MI  G  P  E+   L   L K+G ++
Sbjct: 822 MICVGHLPQLESCKILICRLYKKGEKE 848



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 161/415 (38%), Gaps = 92/415 (22%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y SMI+SL K ++ +   DL +++  K ++ NV  +  ++  Y +  KV EA      M
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEI----------------------------F 189
                  N   FN L+  LC    +++A  +                            F
Sbjct: 559 LSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDF 618

Query: 190 DCMKDRFI--------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           D    RF         PD+ TY+  ++ + ++  L  A ++  +M + G +PD+ TY  +
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSL 678

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPT-----SFIYSVLVHTYG-----------VENR 285
           +      GR + A  ++K M  T C P+     S I  +L   YG           + N 
Sbjct: 679 IKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNM 738

Query: 286 IE-DAVDTFLE-------------------------------------MEKNGILADVAM 307
           +E D V   LE                                      +K GI     +
Sbjct: 739 MEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELV 798

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           +NAL+   CK  K     +V+ DM   G  P   +C I++  L  +GE +    VF+ ++
Sbjct: 799 FNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLL 858

Query: 368 KLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +    D +  + ++I    + G +E  ++++  M+      S  T+S+LI G  D
Sbjct: 859 QCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEGPPD 913


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 153/299 (51%), Gaps = 3/299 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N L+  LC       A  + D M  R  +PD  TY+ILLE   K     +A ++  EM 
Sbjct: 155 YNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR 214

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D GC PDIVTY ++V+ +C+ GRVD+A+  +KS+ S  C P +  Y++++       R E
Sbjct: 215 DKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWE 274

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           DA     EM + G   +V  +N LI   C+    +    +L  +   G  PNS + N IL
Sbjct: 275 DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPIL 334

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +    + + D A      M+   C  D  +Y  ++   C+GGE++ A ++   +K K   
Sbjct: 335 HAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 394

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLK 464
           P + +++ +I+GL   G   ++  LL +M+ KG++P   T+  +   L +EGR E+ +K
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIK 453



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 175/385 (45%), Gaps = 38/385 (9%)

Query: 94  EHSVRAYHSMIESL-AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E     Y+++I  L  + R    +  L + +R   + +V T+ I++    +    ++AV 
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             + M+  G   ++  +N +++ +C+   V  A E    +      P++ +Y+I+L+G  
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLC 268

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A ++  EM   G  P++VT+ +++  LC+ G V+ A+ I+  +    C P S 
Sbjct: 269 TAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++H +  + +++ A+     M  +G   D+  YN L+ A C+  +      +L  +
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
             KG  P   + N +++GL   G+T+EA  +   M+ K  + D  TY+ +    C+ G +
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448

Query: 391 EKAFK-----------------------------------VWKYMKLKRFIPSMHTFSVL 415
           E+A K                                   ++ YM     +P+  T+++L
Sbjct: 449 EEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTIL 508

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGI 440
           I GL  +G+V ++  ++ ++  +G+
Sbjct: 509 IEGLAYEGLVKEAREMMAELCSRGV 533



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 5/291 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E +  +Y+ +++ L    +++    L+  M R  R  NV TF +++    R   VE A+ 
Sbjct: 254 EPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAME 313

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
             + + KYG T N  ++N +L A CK K + +A    + M      PD  +Y+ LL    
Sbjct: 314 ILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALC 373

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   +  A E+  ++ D GC P +++Y  ++D L KAG+ +EAL ++  M +   +P   
Sbjct: 374 RGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDII 433

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS +      E RIE+A+  F +++  GI  +  +YNA++   CK     +   +   M
Sbjct: 434 TYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYM 493

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382
            S G  PN  T  I++ GL   G   EA  +   M +LC     + T++ K
Sbjct: 494 VSNGCMPNESTYTILIEGLAYEGLVKEAREM---MAELCSRGVVSKTLVNK 541



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 21/303 (6%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  ++ I+++     ++ E+A      M + G   N+  FN L+S LC+   V  A EI 
Sbjct: 256 NTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEIL 315

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D + K    P+S +Y+ +L  + K   + RA      MV +GC PDIV+Y  ++  LC+ 
Sbjct: 316 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRG 375

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G VD A+ ++  +    C P    Y+ ++       + E+A++   EM   G+  D+  Y
Sbjct: 376 GEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITY 435

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + +    C+  + +   +    +   G+ PN+   N IL GL  R  T  A  +F  M+ 
Sbjct: 436 STISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVS 495

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C  +  TYT++I+     G +++A +                   ++  LC +G+VS 
Sbjct: 496 NGCMPNESTYTILIEGLAYEGLVKEARE-------------------MMAELCSRGVVSK 536

Query: 428 SCV 430
           + V
Sbjct: 537 TLV 539



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 17/230 (7%)

Query: 244 VLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           VL + G ++EA+ +V+SM   + +   P +     L+       R  +A       E   
Sbjct: 65  VLVRRGDLEEAIRLVESMAGLEPSAAGPCA----ALIKKLCASGRTAEARRVLASCEP-- 118

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              DV  YNA++  +C   +  N  R++  M    + P++ T N ++ GL GRG TD A 
Sbjct: 119 ---DVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNAL 172

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            V   M++  C  D  TYT++++  C+    ++A K+   M+ K   P + T++V++NG+
Sbjct: 173 AVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGI 232

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFG-KLRKLLIKEGREDVLKFLQE 468
           C +G V D+   L+ +   G  P+  ++   L+ L   E  ED  K + E
Sbjct: 233 CQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 282



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 39/172 (22%)

Query: 333 SKGVAPN-----SRTCNIILNGLIGRGETDEAYRVF------------------------ 363
           +  VAPN     S   N  L  L+ RG+ +EA R+                         
Sbjct: 44  AGAVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMAGLEPSAAGPCAALIKKLCAS 103

Query: 364 ------RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                 RR++  CE D  +Y  M+  +C  G+L+ A ++   M ++   P  +T++ LI 
Sbjct: 104 GRTAEARRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIR 160

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQE 468
           GLC +G   ++  +L+DM+ +G  P   T+  L +   K  G +  +K L E
Sbjct: 161 GLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDE 212


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 198/411 (48%), Gaps = 23/411 (5%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRML--------- 129
           FF W  K+  Y+H++  + SM+  L + R +     I   ++ A R +  +         
Sbjct: 94  FFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNE 153

Query: 130 --------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
                   ++ +   ++ + A+ + VE A   +  M   G+  +L  FN L++ L K   
Sbjct: 154 ISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGK 213

Query: 182 VRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           VR+A+ I     +    PD  TY+ L+ G  ++ NL  A  +F  MV  GC+P+ VTY  
Sbjct: 214 VREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYST 273

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ LC  GRVDEAL +++ M      PT + Y++ +         E+A++    M+K G
Sbjct: 274 LINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRG 333

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              +V  Y ALI    +  K +    +   M  +G+ PN+ T N ++N L   G    A 
Sbjct: 334 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 393

Query: 361 RVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++F  M      A+  TY  +IK  C GG++EKA  +++ M     +P++ T++ LING 
Sbjct: 394 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG V+++  LL+ M E G  P   T+ +L     K G+ +   F  ++M
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 191/384 (49%), Gaps = 3/384 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++  E +V  Y   I +L  I   +   +LV  M+ +    NV+T+  ++   +R+ K+E
Sbjct: 296 EKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLE 355

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+  ++ M K G+  N   +N L++ LC       A +IF  M+    + +++TY+ ++
Sbjct: 356 VAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 415

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G     ++ +A  +F +M+  G  P +VTY  +++     G V+ A  ++  M    C 
Sbjct: 416 KGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 475

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  + Y+ LV  +    ++E A   F EM + G+  +   Y ALI    K  K      +
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           LK M   G  PN  + N ++NGL       EA ++  +M++     +  TYT +I   C+
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G  + AFK++  M+ ++ +P+++T+S LI GLC +G   ++ +LL++M  KG+ P   T
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 655

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           F  L    +  GR D    L  +M
Sbjct: 656 FTSLIDGFVVLGRIDHAFLLLRRM 679



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 182/372 (48%), Gaps = 3/372 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K++    +V+ Y ++I  L+++ + ++   L + M  + ++ N  T+  ++ +     + 
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 389

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
             A+  F+ M+ +G   N   +N ++  LC   ++ KA  +F+ M K   +P   TY+ L
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 449

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+    N+  A  +   M + GC PD  TY  +V    K G+++ A    + M     
Sbjct: 450 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ L+  +  + +++ A+     ME+ G   +V  YNA+I    K N+F    +
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEK 569

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +   M  +G+ PN  T   +++GL   G T  A+++F  M K  C  +  TY+ +I   C
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q G+ ++A  + K M+ K   P   TF+ LI+G    G +  + +LL  M++ G +P+  
Sbjct: 630 QEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYR 689

Query: 446 TFGKLRKLLIKE 457
           T+  L K L KE
Sbjct: 690 TYSVLLKGLQKE 701



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 164/341 (48%), Gaps = 9/341 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L    ++     + + M     L N +T+  I++       +E+A+  F  M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G    +  +N L++      NV  A  + D MK+    PD  TY+ L+ G+ K   L
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F+EMV+ G NP+ V+Y  ++D   K G+VD AL ++K M+   C P    Y+ +
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++    ENR  +A     +M + G+L +V  Y  LI   C+  + +  +++  DM  +  
Sbjct: 555 INGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC 614

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T + ++ GL   G+ DEA  + + M  K    D  T+T +I  F   G ++ AF 
Sbjct: 615 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFL 674

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           + + M      P+  T+SVL+ GL         C+LLE+ I
Sbjct: 675 LLRRMVDMGCKPNYRTYSVLLKGL------QKECLLLEEKI 709


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 182/354 (51%), Gaps = 4/354 (1%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+   F  +M  + R   +  A   F+ MQK G+  +   +  L++ LC++  +++A+ 
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 188 IFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M+D+ +  D+ TY++L++G+ K   +  A  +  +MV     P++VTY  + D LC
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G V  A  ++  M S       F Y+ L++       +E A+ T ++M++ G+  DV 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  +IGA C++ +    + +L++M  KG+ P   T N+++NG    G  +   R+   M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           + K    +  TY  ++K +C    ++   +++K M  +  +P+ +T+++LI G C    +
Sbjct: 592 LEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNM 651

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM--NLLVKEP 477
            ++     +MIEKG R +  ++  L +LL K+ +    + L EKM    L  EP
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEP 705



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 25/425 (5%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY--- 93
           S   ++L  P   L   L Q GI  SPE    VL           C     E  Q +   
Sbjct: 200 SFDLLLLCLPSAPLLLRLRQYGISPSPESCNAVL-----------CRLPLDEAVQLFQEL 248

Query: 94  -EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
            E +  +Y+ ++++L    + +    L + M +    +V T+ I++  Y  + ++E A+ 
Sbjct: 249 PEKNTCSYNILLKALCTAGRIKDAHQLFDEMASPP--DVVTYGIMVHGYCTLSELETAIK 306

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             + M   G+  N  A+  +++ LC    V  A  +  D +    + D+  ++ ++ G+ 
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +  +L  AR  F EM   G   D VTY  +++ LC+AG + EA  +++ M+       + 
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+VL+  Y    ++ +A     +M +  +  +V  Y AL    CK         +L +M
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA----DADTYTMMIKMFCQG 387
            SKG+  N  T N ++NGL   G  ++A    R MI + EA    D  TYT +I   CQ 
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQA---MRTMIDMDEAGLKPDVYTYTTIIGALCQS 543

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            EL++A  + + M  K   P++ T++VL+NG C  G V     LLE M+EK I P+  T+
Sbjct: 544 KELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 448 GKLRK 452
             L K
Sbjct: 604 NSLMK 608



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 3/300 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  +I+   K+ +    + + N M  KR+  NV T+  +     +   V  A    + M 
Sbjct: 428 YTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMC 487

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G+  N+  +N L++ LCK+ N+ +A + + D  +    PD  TY+ ++    +   L 
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELD 547

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           RA  + +EM+D G  P IVTY ++++  C +GRV+    +++ M      P +  Y+ L+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y +E  ++   + +  M    ++ +   YN LI   CKA   K       +M  KG  
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKV 396
             + + N ++  L  + +  EA R+F +M K    A+ D Y   I +      LE    +
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLAL 727



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 286 IEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++AV  F E+ EKN        YN L+ A C A + K+ +++  +M S    P+  T  
Sbjct: 238 LDEAVQLFQELPEKN-----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYG 289

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I+++G     E + A ++   M  +  E +   YT +I + C  G++  A +V + M + 
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR---- 459
             +     F+ +++G C KG ++ +    ++M ++G+   G T+  L   L + G     
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 460 EDVLKFLQEK 469
           E VL+ +++K
Sbjct: 410 ERVLQEMEDK 419



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I +L + ++      L+  M  K +   + T+ ++M  +    +VE       
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M +  +  N   +N L+   C  KN++   EI+  M     +P+  TY+IL++G  K  
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           N+  A     EM++ G      +Y  ++ +L K  +  EA  + + M
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 188/368 (51%), Gaps = 4/368 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    + +    +V  MR      N  T+  ++  + R  +++ A    
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 155 NVMQKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK 212
           ++M++ G    NL  FN +++ LCK+  +  A+++FD M ++   PD  +Y+ LL G+ K
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L  +  +F EM   G  PD+VT+  ++   CKAG +++A+ +V  M     R     
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           ++ L+  +  +  ++DA+    EM K GI   V  YNALI  +CK  +      ++++M 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +K V P+  T + I++G    G  D A+++ ++M+K     DA TY+ +I+  C+   L 
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++++ M      P   T++ LI+G C +G V  +  L ++MI KG+ P   T+  L 
Sbjct: 451 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 510

Query: 452 KLLIKEGR 459
             L K  R
Sbjct: 511 NGLSKSAR 518



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 202/424 (47%), Gaps = 21/424 (4%)

Query: 61  VSPEIVE--DVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           ++P++V    +L  +   G L      ++E  Q+     V  + S+I +  K    +   
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            LV  MR + + +N  TF  ++  + +   +++A+     M+K G+  ++  +N L++  
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 177 CKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK   +  A+E+   M+  R  PD  TYS ++ G+ K  NL  A ++ ++M+  G  PD 
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           +TY  ++  LC+  R+++A  + ++M     +P  F Y+ L+  +  E  +E A+    E
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 493

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS--------------- 340
           M + G+L DV  Y+ LI    K+ + K  +R+L  +  +   P++               
Sbjct: 494 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEF 553

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
           ++   +L G   +G   EA +V++ M+ +  + D   Y+++I   C+GG + KA    K 
Sbjct: 554 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M    F P+  +   L+ GL ++G+V ++   ++D++        E    L  L  KEG 
Sbjct: 614 MLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGN 673

Query: 460 EDVL 463
            D L
Sbjct: 674 VDAL 677



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 207/483 (42%), Gaps = 59/483 (12%)

Query: 55  DQSGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           D  G   +P  V    ++  F  AG L  A        ++ N + ++  ++SM+  L K 
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            + +    + + M R     +V ++  ++  Y +V  + E++  F+ M + G+  ++  F
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-------------------------------- 197
             L+ A CK+ N+ +A  +   M++R +                                
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 198 ----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
               P    Y+ L+ G+ K   +  ARE+ REM      PD+VTY  ++   CK G +D 
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 416

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  + + M      P +  YS L+     E R+ DA + F  M + G+  D   Y  LI 
Sbjct: 417 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM------- 366
             CK    +    +  +M  KGV P+  T ++++NGL     T EA+R+  ++       
Sbjct: 477 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 536

Query: 367 -------IKLC--EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                  + LC  +A+  +   ++K FC  G +++A KV++ M  + +      +S+LI+
Sbjct: 537 DNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIH 596

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G C  G V  +    + M+  G  P+  +   L + L +EG   V++      +LL   P
Sbjct: 597 GHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGM--VVEADNAIQDLLTCCP 654

Query: 478 LCD 480
           L D
Sbjct: 655 LAD 657



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 5/278 (1%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P    Y+ +L     D +LP AR     M+  G  P++ TY I+V  LC  GR++EA+
Sbjct: 114 YAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA--VDTFLEMEKNGILADVAMYNALIG 313
           G+V  M    C P +  Y+ LV  +     ++ A  V + +  E N    ++  +N+++ 
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK-PNLVTFNSMVN 231

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
             CKA + +   +V  +M  +G+AP+  + N +L+G    G   E+  VF  M +     
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  T+T +I   C+ G LE+A  +   M+ +    +  TF+ LI+G C KG + D+ + +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           E+M + GI+PS   +  L     K GR D+ + L  +M
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 107/296 (36%), Gaps = 52/296 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I    K+      + L   M  K +L +  T+  ++R     +++ +A   F 
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 457

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK-- 212
            M + GV  +   +  L+   CK  NV KA  + D M +   +PD  TYS+L+ G  K  
Sbjct: 458 NMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSA 517

Query: 213 ---------------DPN---------------------------------LPRAREIFR 224
                          DP                                  +  A ++++
Sbjct: 518 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M+D     D   Y I++   C+ G V +AL   K M  +   P S     LV     E 
Sbjct: 578 SMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEG 637

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
            + +A +   ++     LAD     ALI    K      +  VL  M   G+ P+S
Sbjct: 638 MVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSS 693


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 196/388 (50%), Gaps = 4/388 (1%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           W   + +   +++A + +++ L K  ++  MW +   M  +    NV T+  ++    R 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQ 206

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTY 203
               +A   F+ M +  +   +  +  L+  LC    + +A+ +F  M++   +P+  TY
Sbjct: 207 GDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTY 266

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + +++G+ K  ++ +A E++ EM+  G  P++VT+GI++D LCK   +  A   +  M S
Sbjct: 267 NTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P  F+Y+ L+  Y     + +A+    E+EK+ IL DV  Y+ LI   C  ++ + 
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
              +L++M  KG  PN+ T N +++G    G  ++A  V  +M  K  E +  T++ +I 
Sbjct: 387 ADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +C+ G++E A  ++  M +K  +P +  ++ LI+G    G   ++  L ++M E G+ P
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506

Query: 443 SGETFGKLRKLLIKEGR-EDVLKFLQEK 469
           +  T   L   L K+GR  D +K    K
Sbjct: 507 NVFTLSCLIDGLCKDGRISDAIKLFLAK 534



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 177/403 (43%), Gaps = 31/403 (7%)

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
            E +    RN+G L                ++  Y++M++   KI   +   +L   M  
Sbjct: 247 AESMFRTMRNSGMLP---------------NLYTYNTMMDGYCKIAHVKKALELYXEMLG 291

Query: 126 KRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             +L NV TF I++    +  ++  A      M  +GV  N+  +N L+   CK+ N+ +
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351

Query: 185 AQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A  +  +  K   +PD  TYSIL++G      +  A  + +EM   G  P+ VTY  ++D
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
             CK G +++A+ +   M      P    +S L+  Y    ++E A+  + EM   G+L 
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLP 471

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           DV  Y ALI    K    K  +R+ K+M   G+ PN  T + +++GL   G   +A ++F
Sbjct: 472 DVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531

Query: 364 RRMI--------------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                              LC  +   YT +I+  C  G + KA K +  M+     P +
Sbjct: 532 LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDV 591

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
            T  V+I G      + D  +L  D+++ GI P+   +  L K
Sbjct: 592 FTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAK 634



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 182/374 (48%), Gaps = 11/374 (2%)

Query: 103 MIESLAKIRQYQIMWDLVNAMR----TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +I+ L K R+ +I   + N +     +K   NV  F +++  ++ +  VEEA++ +  M 
Sbjct: 96  LIQCLQKSRRSRICCSVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMD 153

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
              V   + A N +L  L K        +++  M  R   P+  TY  L++G  +  +  
Sbjct: 154 ---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFL 210

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A  +F EM++    P +V Y I++  LC   R+ EA  + ++M ++   P  + Y+ ++
Sbjct: 211 KAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMM 270

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y     ++ A++ + EM  +G+L +V  +  LI   CK ++  +  + L DM S GV 
Sbjct: 271 DGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV 330

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN    N +++G    G   EA  +   + K     D  TY+++IK  C    +E+A  +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + MK K F+P+  T++ LI+G C +G +  +  +   M EKGI P+  TF  L     K
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 457 EGREDVLKFLQEKM 470
            G+ +    L  +M
Sbjct: 451 AGKMEAAMGLYTEM 464



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAY 100
           M+S+ K ++D A    G+  +  +   +++ +  AG L+      +E ++      V  Y
Sbjct: 314 MVSARKFLIDMA--SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTY 371

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
             +I+ L  + + +    L+  M+ K  L N  T+  ++  Y +   +E+A+   + M +
Sbjct: 372 SILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPR 218
            G+  N+  F+ L+   CK+  +  A  ++  M  +  +PD   Y+ L++G  KD N   
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI-------------VKSMDSTV 265
           A  + +EM + G +P++ T   ++D LCK GR+ +A+ +                +D ++
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSL 551

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P   +Y+ L+     + RI  A   F +M  +G+  DV     +I    +A   ++V 
Sbjct: 552 CSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVM 611

Query: 326 RVLKDMNSKGVAPNSRTCNIILNG 349
            +  D+   G+ PNS    ++  G
Sbjct: 612 MLQADILKMGIIPNSSVYRVLAKG 635



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 118/268 (44%), Gaps = 19/268 (7%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K++ +  +   Y+++I+   K    +   ++ + M  K +  N+ TF  ++  Y +  K+
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E A+  +  M   G+  ++ A+  L+    K  N ++A  +   M++  + P+  T S L
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCL 514

Query: 207 LEGWGKDPNLPRAREIF-------------REMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           ++G  KD  +  A ++F              E+  + C+P+ V Y  ++  LC  GR+ +
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A      M  +  RP  F   V++  +     + D +    ++ K GI+ + ++Y  L  
Sbjct: 575 ASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAK 634

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            + ++   K+          +GV P  R
Sbjct: 635 GYEESGYLKSALSFC----GEGVQPLDR 658


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 183/358 (51%), Gaps = 10/358 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I  L K  +    ++L++ MR + +   V     ++R   +  +  +A+  F  + 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVA 92

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNL 216
               T ++  FN L+ AL KS  V +A +IF+ M    + +P+  TY+ ++ G  KD  L
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA E+   M +TGC P+++TY ++V+ LCKAGR D+   +++ M     +P   +Y+ L
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      R+++A++    M ++G    V  YN+L+  FC++ +    +R+++ M+ +G 
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ------GGE 389
            P+    N ++ GL      D+A  + ++M+   C  D  TY+ +I   C+        +
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           LE A ++ + MK     P+  T++V+I GLC       +  LL  MI+  + P   +F
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSF 390



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 155/300 (51%), Gaps = 3/300 (1%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIF 223
           N   +  L+  LCK+  + +A E+ D M+DR IP     ++ ++ G  K      A   F
Sbjct: 29  NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYF 88

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGV 282
           + +  T C PDI+T+ I+VD L K+GRV+EA  I +SM  S+ C P    Y+ +++    
Sbjct: 89  KTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCK 148

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           + +++ A++    M + G   +V  Y+ L+   CKA +    + +L++M  +G  P+   
Sbjct: 149 DGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIM 208

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N +LNGL      DEA  + + MI+  C     TY  ++++FC+  ++++AF++ + M 
Sbjct: 209 YNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +   P +  ++ +I GLC    + D+  LL+ M+     P   T+  +   L K+ R D
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 172/353 (48%), Gaps = 10/353 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYT 153
           +V  Y  ++E L K  +    + L+  M T+R    +V  +  ++    + ++++EA+  
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEM-TRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGK 212
             +M + G    +  +N L+   C+SK V +A  +   M +R  P D   Y+ ++ G  +
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE------ALGIVKSMDSTVC 266
           D  L  A+ + ++MV   C PD++TY  ++D LCK  RVD       A  I++ M  T C
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  Y+V++       + + A+     M  + ++ D++ ++ +IG+ CK++     Y+
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYK 408

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +   M+ +   PN      +++GL   GE D+A RVF  M++       TY  ++   C 
Sbjct: 409 IFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCG 468

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
            G +E+A ++ + M  K   P   ++  LI GLC    V ++  L + +  KG
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKG 521



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 161/338 (47%), Gaps = 10/338 (2%)

Query: 120 VNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           V   R +R +  E T+  ++    +  K+++A    + M+  G+   +A  NG++  LCK
Sbjct: 18  VQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCK 77

Query: 179 SKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNPDIV 236
           +     A   F  +   +  PD  T++IL++   K   +  A +IF  M   + C P++V
Sbjct: 78  AGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVV 137

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  +++ LCK G++D A+ ++  M+ T C P    YSVLV       R +       EM
Sbjct: 138 TYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + G   DV MYN L+   CK+ +      +++ M   G  P   T N ++       + 
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           D A+R+ + M  + C  D   Y  +I   C+   L+ A  + K M   R +P + T+S +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 416 INGLC-DKGIVSD-----SCVLLEDMIEKGIRPSGETF 447
           I+GLC D  + +D     +C +LE M + G  P+  T+
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEE 149
           V  Y ++I+ L K  +    W L  A     M+       N  T+ +++    R +K ++
Sbjct: 311 VITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQ 370

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+     M    V  +L++F+ ++ +LCKS ++  A +IF  M +R   P+   Y+ L++
Sbjct: 371 ALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALID 430

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   + +A  +F  MV++   P + TY  ++D LC  GR++EA+ +V+ M    C P
Sbjct: 431 GLSKGGEVDKAVRVFELMVESF-RPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFP 489

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y  L+      + +E+A + F  +E  G   +V +YN L+   CK  +  + + V 
Sbjct: 490 DGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVA 549

Query: 329 KDMNSKG 335
             +   G
Sbjct: 550 NKLIEAG 556



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 1/202 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           KQ     +   Y  +IE L + R+ Q    L+  M    ++ ++ +F +++    +   +
Sbjct: 344 KQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDL 403

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
           + A   F +M +     N  A+  L+  L K   V KA  +F+ M + F P   TY+ +L
Sbjct: 404 DAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVL 463

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G      +  A  +   M+   C PD  +YG ++  LC+   V+EA  + +++++    
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 268 PTSFIYSVLVHTYGVENRIEDA 289
               +Y+VLV+    + R+ DA
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDA 545



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           N  LN L+  G+  +A ++FR   + C  +  TY  +I   C+ G+L++A+++   M+ +
Sbjct: 2   NCALNLLVRAGQHGQAVQLFRE--ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR 59

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              P +   + +I GLC  G   D+    + +      P   TF  L   L+K GR
Sbjct: 60  GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 176/332 (53%), Gaps = 2/332 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  ++  + R  +V+ A    ++M++ G+  NL  FN +++ +CK+  +  A+++F
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M K+   PD  +Y+ L+ G+ K      A  +F EM   G  PD+VT+  ++ V+CKA
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A+G+V+ M     +     ++ L+  +  +  ++DA+    EM +  I   V  Y
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCY 370

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           NALI  +C   +      ++++M +KGV P+  T + IL+     G+T  A+++ ++M++
Sbjct: 371 NALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLE 430

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                DA TY+ +I++ C+   L  A  ++K M      P   T++ LI+G C +G V  
Sbjct: 431 NGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVER 490

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +  L ++M++ G+ P   T+  L   L K  R
Sbjct: 491 ALSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 149/312 (47%), Gaps = 3/312 (0%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   ++ A+N +L AL    ++  A+  FD M  D   P+  TY+IL+       +   A
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             + R+M   GC+P+ VTY  +V   C+AG VD A  +V  M     +P    ++ +V+ 
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                R+EDA   F EM K G+  D   YN L+G +CK         V  +M  KG+ P+
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T   +++ +   G  + A  + R M  +  + +  T+T +I  FC+ G L+ A    +
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M+  R  PS+  ++ LING C  G + ++  L+ +M  KG++P   T+  +     K G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 459 REDVLKFLQEKM 470
                  L ++M
Sbjct: 417 DTHSAFQLNQQM 428



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 184/385 (47%), Gaps = 18/385 (4%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  + S+I  + K    +    LV  MR + + +N  TF  ++  + +   +++A+    
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M++  +  ++  +N L++  C    + +A+E+   M+ + + PD  TYS +L  + K+ 
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +   A ++ ++M++ G  PD +TY  ++ VLC+  R+ +A  + K+M S   +P    Y+
Sbjct: 417 DTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYT 476

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +  E  +E A+    EM K G+L DV  Y+ LI    K+ + K   R+L  +  +
Sbjct: 477 SLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE 536

Query: 335 GVAPNS-------RTCN--------IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
              P +       R C          +L G   +G  +EA +V++ ++ +    D   Y+
Sbjct: 537 EPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYS 596

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           ++I   C+ G + KA    K M    F P+  +   LI GL +KG+V ++  +++ ++  
Sbjct: 597 VLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNC 656

Query: 439 GIRPSGETFGKLRKLLIKEGREDVL 463
                 E    L  L +KEG  D +
Sbjct: 657 CSLADAEASKALIDLNLKEGNVDAV 681



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 171/395 (43%), Gaps = 25/395 (6%)

Query: 99  AYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y++++    K+   ++ +       R   M +V TF  ++    +   +E AV     M
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREM 323

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKA----QEIFDCMKDRFIPDSKTYSILLEGWGKD 213
           ++ G+  N   F  L+   CK   +  A    +E+  C   R  P    Y+ L+ G+   
Sbjct: 324 RERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQC---RIQPSVVCYNALINGYCMV 380

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  ARE+ REM   G  PD+VTY  ++   CK G    A  + + M      P +  Y
Sbjct: 381 GRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITY 440

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+     E R+ DA   F  M   G+  D   Y +LI   CK    +    +  +M  
Sbjct: 441 SSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVK 500

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRV---------------FRRMIKLC-EADADTY 377
            GV P+  T ++++NGL     T EA R+               +  +++ C  A+  + 
Sbjct: 501 AGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSV 560

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             ++K FC  G + +A KV++ +  + +      +SVLI+G C +G V  +    + M++
Sbjct: 561 LALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQ 620

Query: 438 KGIRP-SGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            G  P S  T   +R L  K    +  + +Q+ +N
Sbjct: 621 CGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLN 655



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 139/373 (37%), Gaps = 88/373 (23%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +Q   + SV  Y+++I     + +     +LV  M  K +  +V T+  I+  Y +    
Sbjct: 359 RQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDT 418

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
             A      M + GV  +   ++ L+  LC+ K +  A  +F  M    + PD  TY+ L
Sbjct: 419 HSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSL 478

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL--------------------- 245
           ++G  K+ N+ RA  +  EMV  G  PD+VTY ++++ L                     
Sbjct: 479 IDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEP 538

Query: 246 -----------------------------CKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
                                        C  G ++EA  + +S+          +YSVL
Sbjct: 539 VPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVL 598

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H +  E                             G   KA  F       K M   G 
Sbjct: 599 IHGHCRE-----------------------------GNVMKALSFH------KQMLQCGF 623

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFK 395
           APNS +   ++ GL  +G   EA +V ++++  C  ADA+    +I +  + G ++    
Sbjct: 624 APNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLD 683

Query: 396 VWKYMKLKRFIPS 408
           V   M     +PS
Sbjct: 684 VLHGMARDGLLPS 696



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 16/225 (7%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDC 191
           T+  ++  + +   VE A+   + M K GV  ++  ++ L++ L KS   ++AQ + F  
Sbjct: 474 TYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKL 533

Query: 192 MKDRFIPDSKTYSIL---------------LEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
             +  +P +  Y  L               L+G+     +  A ++++ ++D   N D  
Sbjct: 534 YHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGS 593

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y +++   C+ G V +AL   K M      P S     L+     +  + +A     ++
Sbjct: 594 VYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQL 653

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                LAD     ALI    K      V  VL  M   G+ P+ R
Sbjct: 654 LNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPSPR 698



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKA 393
           G AP+    N +L  L        A R F  M+    A +  TY ++++  C  G  ++A
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             V + M+     P+  T++ L+   C  G V  +  L++ M E G++P+  TF  +   
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 454 LIKEGR-EDVLKFLQEKMNLLVKEPL 478
           + K GR ED  K   E    +VKE L
Sbjct: 237 ICKAGRMEDARKVFDE----MVKEGL 258


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 210/464 (45%), Gaps = 43/464 (9%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           +  PS   L A  S S ++ S     +   +     R+SP+ V  ++ + +N   LA   
Sbjct: 65  TDHPSHHHLAAVDSKSTLLKS---YTVTPPIKPWPQRLSPKRVVSMISRQQNL-DLALQI 120

Query: 84  FKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKY 141
           F  A K  +N+ H+   Y +MIE L+K R ++ M  L++ +   ++   E  F  ++R Y
Sbjct: 121 FDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIRNY 180

Query: 142 ARVQKVEEAVYTF------------------------------------NVMQKYGVTQN 165
               + + A+ TF                                    N  +K+G+  N
Sbjct: 181 GFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPN 240

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           +   N L+ ALCK  ++  A  + + M    FIP+  TY+ +L G+    ++  AR +F 
Sbjct: 241 VFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFG 300

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           E++D G  PD  TY I++D  CK GR  +A+ ++  M+     P    Y V++  Y  E 
Sbjct: 301 EILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEK 360

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +  + ++   +M +   +   A+   +I   C+  K +    + K +  K   P++   +
Sbjct: 361 KSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITS 420

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            +++ L   G+  EA ++F    K       TY  +I   C+GGEL +A ++W  M  K 
Sbjct: 421 TLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKG 480

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +P+  T+++LI G C  G   +   ++E+M++ G  P+  T+ 
Sbjct: 481 CVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 146/312 (46%), Gaps = 21/312 (6%)

Query: 172 LLSALCKSKNVRKAQEIFDC---MKDRFIPDSKTYSILLEGWGK----DPNLPRAREIFR 224
           ++S + + +N+  A +IFD        F  + +TY  ++E   K    +P      ++ +
Sbjct: 104 VVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHK 163

Query: 225 EMVDTGCNPDIV---TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
             +  G N  I     YG        AGR   A+     + S   +P+   ++ L++T  
Sbjct: 164 SQIKCGENLFITVIRNYGF-------AGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTL- 215

Query: 282 VENRIEDAVDTFLE--MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           V+N+  D V    +   +K GI+ +V   N L+ A CK N      RVL++M + G  PN
Sbjct: 216 VQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPN 275

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T   IL G + +G+   A RVF  ++ +    D  TYT+++  +C+ G    A KV  
Sbjct: 276 VVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMD 335

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M+  R  P+  T+ V+I   C +    +   LL+DM+EK   PS     ++  +L +EG
Sbjct: 336 EMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEG 395

Query: 459 REDVLKFLQEKM 470
           + +V   L +K+
Sbjct: 396 KVEVACELWKKL 407



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 1/177 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQ 158
           Y  +IE+  K ++   + +L++ M  K+ +     C  ++       KVE A   +  + 
Sbjct: 349 YGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLL 408

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           K   T + A  + L+  LCK   V +A+++FD  +   IP + TY+ L+ G  +   LP 
Sbjct: 409 KKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPE 468

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           A  ++  MV+ GC P+  TY +++   CK G   E + +++ M    C P    Y++
Sbjct: 469 AARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 197/411 (47%), Gaps = 23/411 (5%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRML-NVETFC-- 135
           FF W  K+  Y+H++  + SM+  L + R +     I   ++ A R +  +  V  F   
Sbjct: 136 FFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNE 195

Query: 136 --------------IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
                          ++ + A+ + VE A   +  M   G+  +L  FN L++ L K   
Sbjct: 196 ISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGK 255

Query: 182 VRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           VR+A+ I     +    PD  TY+ L+ G  ++ NL  A  +F  MV  GC+P+ VTY  
Sbjct: 256 VREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYST 315

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ LC  GRVDEAL +++ M      PT + Y++ +         E+A++    M+K G
Sbjct: 316 LINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRG 375

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              +V  Y ALI    +  K +    +   M  +G+ PN+ T N ++N L   G    A 
Sbjct: 376 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 435

Query: 361 RVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++F  M      A+  TY  +IK  C GG++EKA  +++ M     +P++ T++ LING 
Sbjct: 436 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 495

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG V+++  LL+ M E G  P   T+ +L     K G+ +   F  ++M
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 189/384 (49%), Gaps = 3/384 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++  E +V  Y   I +L  I   +   +LV  M+ +    NV+T+  ++   +R+ K+E
Sbjct: 338 EKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLE 397

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A+  ++ M K G+  N   +N L++ LC       A +IF  M+    + +++TY+ ++
Sbjct: 398 VAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 457

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G     ++ +A  +F +M+  G  P +VTY  +++     G V+ A  ++  M    C 
Sbjct: 458 KGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 517

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  + Y+ LV  +    ++E A   F EM + G+  +   Y  LI    K  K      +
Sbjct: 518 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL 577

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           L+ M   G  PN  + N ++NGL       EA ++  +M +     +  TYT +I   C+
Sbjct: 578 LERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCR 637

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G  + AFK++  M+ ++ +P+++T+S LI GLC +G   ++ +LL++M  KG+ P   T
Sbjct: 638 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 697

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           F  L    +  GR D    L  +M
Sbjct: 698 FTSLIDGFVVLGRIDHAFLLLRRM 721



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 182/372 (48%), Gaps = 3/372 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K++    +V+ Y ++I  L+++ + ++   L + M  + ++ N  T+  ++ +     + 
Sbjct: 372 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 431

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
             A+  F+ M+ +G   N   +N ++  LC   ++ KA  +F+ M K   +P   TY+ L
Sbjct: 432 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 491

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+    N+  A  +   M + GC PD  TY  +V    K G+++ A    + M     
Sbjct: 492 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 551

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ L+  +  + +++ A+     ME+ G   +V  YNA+I    K N+F    +
Sbjct: 552 NPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEK 611

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +   M  +G+ PN  T   +++GL   G T  A+++F  M K  C  +  TY+ +I   C
Sbjct: 612 ICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 671

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q G+ ++A  + K M+ K   P   TF+ LI+G    G +  + +LL  M++ G +P+  
Sbjct: 672 QEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYR 731

Query: 446 TFGKLRKLLIKE 457
           T+  L K L KE
Sbjct: 732 TYSVLLKGLQKE 743



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 186/402 (46%), Gaps = 31/402 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L    ++     + + M     L N +T+  I++       +E+A+  F  M
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G    +  +N L++      NV  A  + D MK+    PD  TY+ L+ G+ K   L
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F+EMV+ G NP+ V+Y  ++D   K G+VD AL +++ M+   C P    Y+ +
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAV 596

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++    ENR  +A     +M + G+L +V  Y  LI   C+  + +  +++  DM  +  
Sbjct: 597 INGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC 656

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T + ++ GL   G+ DEA  + + M  K    D  T+T +I  F   G ++ AF 
Sbjct: 657 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFL 716

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV------------------------L 431
           + + M      P+  T+SVL+ GL  + ++ +  V                        L
Sbjct: 717 LLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNL 776

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQEK 469
           L  M E G  P+ +T+  L   L ++GR    E ++K ++E+
Sbjct: 777 LARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 818



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 181/402 (45%), Gaps = 27/402 (6%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I+  +K  +  I   L+  M       NVE++  ++   ++  +  EA    + M
Sbjct: 557 SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 616

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
            + G+  N+  +  L+  LC++   + A +IF D  K + +P+  TYS L+ G  ++   
Sbjct: 617 AEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 676

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  + +EM   G  PD VT+  ++D     GR+D A  +++ M    C+P    YSVL
Sbjct: 677 DEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVL 736

Query: 277 VHTYG-----VENRI---EDAVDTFLEMEKN----------------GILADVAMYNALI 312
           +         +E ++    +AV +F   EK+                G    +  Y+ L+
Sbjct: 737 LKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLV 796

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
              C+  +F    +++KDM  +G  P+      +L       E D A ++F  +  K  +
Sbjct: 797 SGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQ 856

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
                Y  +I   C+ G++E+A  ++  M  K +      ++VL++GL  +G +     L
Sbjct: 857 LHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKL 916

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           L  M  K   P+ +T+  L + L + G+    + L +K+ +L
Sbjct: 917 LHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVL 958



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 157/347 (45%), Gaps = 27/347 (7%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y+++I  L+K  ++     + + M  + +L NV T+  ++    R  + + A   F
Sbjct: 589 NVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIF 648

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           + M+K     NL  ++ L+  LC+     +A+ +   M+ +   PD  T++ L++G+   
Sbjct: 649 HDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVL 708

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVL---C-----KAGRVDEAL---------- 255
             +  A  + R MVD GC P+  TY +++  L   C     K     EA+          
Sbjct: 709 GRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDV 768

Query: 256 ------GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
                  ++  M    C PT   YS LV     + R  +A     +M++ G   D  +Y 
Sbjct: 769 NFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYY 828

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
           +L+ A CK  +  +  ++   + +KG   +      ++  L   G+ +EA  +F  M+ K
Sbjct: 829 SLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK 888

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
              AD   +T+++    + GEL+   K+   M+ K F P++ T+ +L
Sbjct: 889 EWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 174/348 (50%), Gaps = 37/348 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  ++ +A      M + G   N+  +N L++  CK  N+ +A  +F
Sbjct: 101 SVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLF 160

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M ++   PD  TY+IL++G+ K        ++ +EMV  GC P+ +TY  ++D L K+
Sbjct: 161 NQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 220

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+  +A  + + M    C+P+ F +++++  +    +++ A + F  M   G L D+  Y
Sbjct: 221 GKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 280

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I   C+AN+  +  ++L+ M   G  P+  T N I++GL    + DEAY V+  +  
Sbjct: 281 NIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRN 340

Query: 369 ----------------LCEA--------------------DADTYTMMIKMFCQGGELEK 392
                           LC++                    D   YT++I  FC+  +L+K
Sbjct: 341 GGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDK 400

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +   +  M  K  +P++ T+S++I+ LC    V D C+LL+ M+E+G+
Sbjct: 401 SLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 37/376 (9%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + + +  ++A    + M+K G+  + A +N ++  LC +  V  A   +  M
Sbjct: 35  TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM 94

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +    P   TY+IL++   K   +  A  I  +M++ GC P++VTY  +++  CK G +D
Sbjct: 95  QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMD 154

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL- 311
           EA+ +   M    C P  F Y++L+  Y  + R +D      EM K G   +   YN L 
Sbjct: 155 EAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLM 214

Query: 312 ----------------------------------IGAFCKANKFKNVYRVLKDMNSKGVA 337
                                             I  FCK  +    Y + + M  +G  
Sbjct: 215 DSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCL 274

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P+  T NI+++G       D+A ++  RM +  C  D  TY  ++   C+  ++++A++V
Sbjct: 275 PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 334

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ ++   +   + T S LI+GLC    + D+  LL +M   G  P    +  L     K
Sbjct: 335 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 394

Query: 457 EGRED-VLKFLQEKMN 471
             + D  L F  E ++
Sbjct: 395 ADQLDKSLAFFSEMLD 410



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 42/331 (12%)

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI----PDSKTYSILLEGWGKDPNLPRAREIFRE 225
           N LLSA  + K   KAQE +D  K+       PDS TYS L+ G+ K  +  +A  +  E
Sbjct: 2   NCLLSAFVRKK---KAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDE 58

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALG----------------------------- 256
           M   G  P    Y  ++  LC  GRVD AL                              
Sbjct: 59  MEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARI 118

Query: 257 -----IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
                I++ M    C P    Y+ L++ +     +++AV  F +M +N    DV  YN L
Sbjct: 119 SDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNIL 178

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  +CK  + ++  ++L++M   G  PN  T N +++ L+  G+  +A+ + + M++  C
Sbjct: 179 IDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDC 238

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           +    T+ +MI MFC+ G+L+ A+++++ M  +  +P ++T++++I+G C    + D+  
Sbjct: 239 KPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ 298

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           LLE M E G  P   T+  +   L K  + D
Sbjct: 299 LLERMTEAGCPPDVVTYNSIVSGLCKASQVD 329



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 3/308 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I    K+        L N M       +V T+ I++  Y + ++ ++     
Sbjct: 136 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLL 195

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M KYG   N   +N L+ +L KS     A  +   M  R   P   T++++++ + K 
Sbjct: 196 QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKV 255

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+F+ M D GC PDI TY IM+   C+A R+D+A  +++ M    C P    Y
Sbjct: 256 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 315

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + +V      +++++A + +  +   G   DV   + LI   CK+ +  +  ++L++M  
Sbjct: 316 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 375

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G AP+     I+++G     + D++   F  M+ K C     TY+++I   C+   +  
Sbjct: 376 NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 435

Query: 393 AFKVWKYM 400
              + K M
Sbjct: 436 GCMLLKTM 443



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 1/196 (0%)

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +  + + ++A D F          D   Y+ LI  FCKA  F+  YR+L +M  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           +G+ P++   N I+ GL   G  D A   +R M + C     TYT+++   C+   +  A
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             + + M      P++ T++ LING C  G + ++ VL   M+E    P   T+  L   
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 454 LIKEGR-EDVLKFLQE 468
             K+ R +D  K LQE
Sbjct: 182 YCKQERPQDGAKLLQE 197



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 128/245 (52%), Gaps = 2/245 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E +   Y+++++SL K  +Y   ++L   M R     +  TF +++  + +V +++ A  
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWG 211
            F +M   G   ++  +N ++S  C++  +  A+++ + M +   P D  TY+ ++ G  
Sbjct: 264 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 323

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   +  A E++  + + G   D+VT   ++D LCK+ R+D+A  +++ M+     P   
Sbjct: 324 KASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVV 383

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y++L+H +   ++++ ++  F EM   G +  V  Y+ +I   CK+ + ++   +LK M
Sbjct: 384 AYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 443

Query: 332 NSKGV 336
             +GV
Sbjct: 444 LERGV 448



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 343 CNIILNGLIGRGETDEAYRVFR-RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           CN +L+  + + +  EAY +F+  +  LC  D+ TY+ +I  FC+  + ++A+++   M+
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +  +P    ++ +I GLCD G V  + V   DM ++   PS  T+  L   L K  R  
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARIS 119

Query: 462 VLKFLQEKM 470
               + E M
Sbjct: 120 DASLILEDM 128


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 194/375 (51%), Gaps = 3/375 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I  L K+ + +   DL+  +    +  NV  +  I+    +V+ V EA   F+ M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G++ ++  ++ L+S  C    ++ A ++F+ M  +   PD  T++IL+  + KD  +
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              + +F  M+  G  P+ VTY  ++D  C    V++A  I  +M      P    YS++
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +    + ++A++ F EM +  I+ DV  Y++LI    K+ +     +++  M+ +GV
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N IL+ L    + D+A  +  +   K  + D  TY+++IK  CQ G+LE A K
Sbjct: 432 PPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK 491

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V++ + +K +   ++ ++++I G C +G+ +++  LL  M + G  P  +T+  +   L 
Sbjct: 492 VFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551

Query: 456 KEGREDVLKFLQEKM 470
           K+   D+ + L  +M
Sbjct: 552 KKDENDMAEKLLREM 566



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 180/350 (51%), Gaps = 3/350 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y+++I+S+ K++     +DL + M +K +  +V T+  ++  +  + K+++A+ 
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAID 281

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
            FN M    +  ++  FN L++A CK   +++ + +FD M  + I P+  TY+ L++G+ 
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               + +A+ IF  M   G NPDI +Y IM++  CK  + DEA+ + K M      P   
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L+       RI  A+    +M   G+  ++  YN+++ A CK ++      +L   
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGEL 390
             KG  P+  T +I++ GL   G+ ++A +VF   ++K    D   YT+MI+ FC  G  
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLF 521

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            +A  +   M+    IP   T+ ++I  L  K     +  LL +MI +G+
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 163/362 (45%), Gaps = 37/362 (10%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDR 195
           I+    + +     +Y    M+  G+  NL   N L++  C+   +  A  +F   +K  
Sbjct: 91  ILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMG 150

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           ++PD+ T++ L +G      + +A     ++V  G + D ++YG ++  LCK G    AL
Sbjct: 151 YVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAAL 210

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ +D  + +P   +Y+ ++ +      + +A D F EM   GI  DV  Y+ALI  F
Sbjct: 211 DLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGF 270

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------- 368
           C   K K+   +   M  + + P+  T NI++N     G+  E   VF  M+K       
Sbjct: 271 CILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNF 330

Query: 369 ---------LC--------------------EADADTYTMMIKMFCQGGELEKAFKVWKY 399
                     C                      D  +Y++MI  FC+  + ++A  ++K 
Sbjct: 331 VTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKE 390

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M  K  IP + T+S LI+GL   G +S +  L++ M ++G+ P+  T+  +   L K  +
Sbjct: 391 MHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQ 450

Query: 460 ED 461
            D
Sbjct: 451 VD 452



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 130/252 (51%), Gaps = 2/252 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +Q  + +   Y+S+++    +++      + N M    +  +++++ I++  + +++K +
Sbjct: 323 KQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILL 207
           EA+  F  M +  +  ++  ++ L+  L KS  +  A ++ D M DR +P +  TY+ +L
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSIL 442

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +   K   + +A  +  +  D G  PDI TY I++  LC++G++++A  + + +      
Sbjct: 443 DALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYN 502

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
              + Y++++  + VE    +A+    +ME NG + D   Y  +I +  K ++     ++
Sbjct: 503 LDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKL 562

Query: 328 LKDMNSKGVAPN 339
           L++M ++G+  N
Sbjct: 563 LREMIARGLPLN 574



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 1/172 (0%)

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS    T+   N ++DAV  F  + +         +N ++G+  K+  +  V  + + M 
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKME 112

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELE 391
            +G+ PN   CNI++N     G    A+ VF +++K+    D  T+T + K  C  G+++
Sbjct: 113 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQ 172

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +AF     +    F     ++  LI+GLC  G    +  LL+ +    ++P+
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 198/411 (48%), Gaps = 23/411 (5%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRML--------- 129
           FF W  K+  Y+H++  + SM+  L + R +     I   ++ A R +  +         
Sbjct: 94  FFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNE 153

Query: 130 --------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
                   ++ +   ++ + A+ + VE A   +  M   G+  +L  FN L++ L K   
Sbjct: 154 ISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGK 213

Query: 182 VRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           VR+A+ I     +    PD  TY+ L+ G  ++ NL  A  +F  MV  GC+P+ VTY  
Sbjct: 214 VREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYST 273

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ LC  GRVDEAL +++ M      PT + Y++ +         E+A++    M+K G
Sbjct: 274 LINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRG 333

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              +V  Y ALI    +  K +    +   M  +G+ PN+ T N ++N L   G    A 
Sbjct: 334 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 393

Query: 361 RVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++F  M      A+  TY  +IK  C GG++EKA  +++ M     +P++ T++ LING 
Sbjct: 394 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG V+++  LL+ M E G  P   T+ +L     K G+ +   F  ++M
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 180/402 (44%), Gaps = 42/402 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L    ++     + + M     L N +T+  I++       +E+A+  F  M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G    +  +N L++      NV  A  + D MK+    PD  TY+ L+ G+ K   L
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F+EMV+ G NP+ V+Y  ++D   K G+VD AL ++K M+   C P    Y+ +
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++    ENR  +A     +M + G+L +V  Y  LI   C+  + +  +++  DM  +  
Sbjct: 555 INGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC 614

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG------- 388
            PN  T + ++ GL   G+ DEA     RM ++ CE   DTY+ ++   C+ G       
Sbjct: 615 LPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQ 670

Query: 389 ----------------------------ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
                                       E++ A K++  ++ K F   +  +  LI  LC
Sbjct: 671 LVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALC 730

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
             G V ++  L ++M+EK        +  L   L+KEG  D+
Sbjct: 731 KAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDL 772



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 161/343 (46%), Gaps = 6/343 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  +++  K+E A + F  M + G+  N  ++  L+    K   V  A  +   M
Sbjct: 480 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM 539

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++    P+ ++Y+ ++ G  K+     A +I  +MV+ G  P+++TY  ++D LC+ GR 
Sbjct: 540 EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRT 599

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  I   M+   C P  + YS L++    E + ++A      M + G    +  Y+ L
Sbjct: 600 QFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE----RMSEIGCEPTLDTYSTL 655

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           +   C+  +F    +++KDM  +G  P+      +L       E D A ++F  +  K  
Sbjct: 656 VSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGF 715

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           +     Y  +I   C+ G++E+A  ++  M  K +      ++VL++GL  +G +     
Sbjct: 716 QLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMK 775

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           LL  M  K   P+ +T+  L + L + G+    + L +K+ +L
Sbjct: 776 LLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVL 818



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 46/322 (14%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I+  +K  +  I   L+  M       NVE++  ++   ++  +  EA    + M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
            + G+  N+  +  L+  LC++   + A +IF D  K + +P+  TYS L+ G  ++   
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEG-- 632

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSV 275
            +A E  R M + GC P + TY  +V  LC+ GR  EA  +VK M +   C      YS+
Sbjct: 633 -KADEAER-MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSL 690

Query: 276 LV-HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           L+ H   +E  ++ A+  F  +E  G    +++Y ALI A CKA                
Sbjct: 691 LIAHCKNLE--VDHALKIFHSIEAKGFQLHLSIYRALICALCKA---------------- 732

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
                              G+ +EA  +F  M+ K   AD   +T+++    + GEL+  
Sbjct: 733 -------------------GQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLC 773

Query: 394 FKVWKYMKLKRFIPSMHTFSVL 415
            K+   M+ K F P++ T+ +L
Sbjct: 774 MKLLHIMESKNFTPNIQTYVIL 795



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 18/263 (6%)

Query: 84  FKWAEK------QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCI 136
           F  AEK      +Q    +V  Y ++I+ L +  + Q  + + + M  ++ L N+ T+  
Sbjct: 564 FSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSS 623

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           ++    +  K +EA      M + G    L  ++ L+S LC+     +A+++   MK+R 
Sbjct: 624 LIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 679

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F PD + Y  LL    K+  +  A +IF  +   G    +  Y  ++  LCKAG+V+EA 
Sbjct: 680 FCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQ 739

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL---- 311
            +  +M          +++VLV     E  ++  +     ME      ++  Y  L    
Sbjct: 740 ALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGREL 799

Query: 312 --IGAFCKANKFKNVYRVLKDMN 332
             IG   ++    +  +VLKD N
Sbjct: 800 SRIGKSIESEPLADKLKVLKDSN 822


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 174/333 (52%), Gaps = 3/333 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG-VTQNLAAFNGLLSALCKSKNVRKAQEI 188
           N  T+  ++  + R  +++ A    ++M++ G    NL  FN +++ LCK+  +  A+++
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245

Query: 189 FDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           FD M ++   PD  +Y+ LL G+ K   L  +  +F EM   G  PD+VT+  ++   CK
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 305

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AG +++A+ +V  M     R     ++ L+  +  +  ++DA+    EM K GI   V  
Sbjct: 306 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 365

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YNALI  +CK  +      ++++M +K V P+  T + I++G    G  D A+++ ++M+
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 425

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K     DA TY+ +I+  C+   L  A ++++ M      P   T++ LI+G C +G V 
Sbjct: 426 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE 485

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +  L ++MI KG+ P   T+  L   L K  R
Sbjct: 486 KALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 200/419 (47%), Gaps = 21/419 (5%)

Query: 61  VSPEIVE--DVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           ++P++V    +L  +   G L      ++E  Q+     V  + S+I +  K    +   
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            LV  MR + + +N  TF  ++  + +   +++A+     M+K G+  ++  +N L++  
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 177 CKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK   +  A+E+   M+  R  PD  TYS ++ G+ K  NL  A ++ ++M+  G  PD 
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           +TY  ++  LC+  R+++A  + ++M     +P  F Y+ L+  +  E  +E A+    E
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 493

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS--------------- 340
           M + G+L DV  Y+ LI    K+ + K  +R+L  +  +   P++               
Sbjct: 494 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEF 553

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
           ++   +L G   +G   EA +V++ M+ +  + D   Y+++I   C+GG + KA    K 
Sbjct: 554 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           M    F P+  +   L+ GL ++G+V ++   ++D++        E    L  L  KEG
Sbjct: 614 MLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEG 672



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 207/483 (42%), Gaps = 59/483 (12%)

Query: 55  DQSGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           D  G   +P  V    ++  F  AG L  A        ++ N + ++  ++SM+  L K 
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            + +    + + M R     +V ++  ++  Y +V  + E++  F+ M + G+  ++  F
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-------------------------------- 197
             L+ A CK+ N+ +A  +   M++R +                                
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 198 ----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
               P    Y+ L+ G+ K   +  ARE+ REM      PD+VTY  ++   CK G +D 
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 416

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  + + M      P +  YS L+     E R+ DA + F  M + G+  D   Y  LI 
Sbjct: 417 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM------- 366
             CK    +    +  +M  KGV P+  T ++++NGL     T EA+R+  ++       
Sbjct: 477 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 536

Query: 367 -------IKLC--EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                  + LC  +A+  +   ++K FC  G +++A KV++ M  + +      +S+LI+
Sbjct: 537 DNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIH 596

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G C  G V  +    + M+  G  P+  +   L + L +EG   V++      +LL   P
Sbjct: 597 GHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGM--VVEADNAIQDLLTCCP 654

Query: 478 LCD 480
           L D
Sbjct: 655 LAD 657



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 138/277 (49%), Gaps = 3/277 (1%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P    Y+ +L     D +LP AR     M+  G  P++ TY I+V  LC  GR++EA+
Sbjct: 114 YAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGA 314
           G+V  M    C P +  Y+ LV  +     ++ A      M + G    ++  +N+++  
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNG 232

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
            CKA + +   +V  +M  +G+AP+  + N +L+G    G   E+  VF  M +     D
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             T+T +I   C+ G LE+A  +   M+ +    +  TF+ LI+G C KG + D+ + +E
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 352

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +M + GI+PS   +  L     K GR D+ + L  +M
Sbjct: 353 EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 389


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 181/364 (49%), Gaps = 4/364 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y  +I+SL    +++   +L+  M  K ++ NV T+  ++  Y +   +E+AV   
Sbjct: 357 NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVV 416

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
            +M+   ++ N   +N L+   CKS NV KA  + + M +R  +PD  TY+ L++G  + 
Sbjct: 417 ELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  +   M D G  PD  TY  M+D LCK+ RV+EA  +  S++     P   +Y
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y    ++++A     +M     L +   +NALI   C   K K    + + M  
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            G+ P   T  I+++ L+  G+ D AY  F++M+    + DA TYT  I+ +C+ G L  
Sbjct: 596 IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +   M+     P + T+S LI G  D G  + +  +L+ M + G  PS  TF  L K
Sbjct: 656 AEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715

Query: 453 LLIK 456
            L++
Sbjct: 716 HLLE 719



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 3/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y + + ++ A   FN M   G  +N  A+  L+  LC ++ + +A ++F  M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314

Query: 193 KD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           KD    P  +TY++L++          A  + +EM +TG  P+I TY +++D LC   + 
Sbjct: 315 KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKF 374

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A  ++  M      P    Y+ L++ Y     IEDAVD    ME   +  +   YN L
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I  +CK+N  K +  VL  M  + V P+  T N +++G    G  D AYR+   M  +  
Sbjct: 435 IKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL 493

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TYT MI   C+   +E+A  ++  ++ K   P++  ++ LI+G C  G V ++ +
Sbjct: 494 VPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHL 553

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +LE M+ K   P+  TF  L   L  +G+      L+EKM
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKM 593



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 216/510 (42%), Gaps = 64/510 (12%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
           N  E  ++++     +  I LS P      +L      +SP  V  +     +  T A  
Sbjct: 51  NLPEEESDSMSVPHRLLSI-LSKPNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKT-ALN 108

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLA---------KIRQYQI-----------MWDLVNA 122
           F  W  +   Y+HSV +Y S++  L          KIR   I           + DL   
Sbjct: 109 FSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRK 168

Query: 123 MRT------KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           M        K  L +  +  ++   AR   V+E    +  M +  V  N+  +N +++  
Sbjct: 169 MNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGY 228

Query: 177 CKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK  NV +A Q +   ++    PD  TY+ L+ G+ +  +L  A ++F EM   GC  + 
Sbjct: 229 CKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNE 288

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           V Y  ++  LC A R+DEA+ +   M    C PT   Y+VL+ +     R  +A++   E
Sbjct: 289 VAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKE 348

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           ME+ GI  ++  Y  LI + C   KF+    +L  M  KG+ PN  T N ++NG   RG 
Sbjct: 349 MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGM 408

Query: 356 TDEAY---------------RVFRRMIK-LCEA-------------------DADTYTMM 380
            ++A                R +  +IK  C++                   D  TY  +
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSL 468

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+ G  + A+++   M  +  +P   T++ +I+ LC    V ++C L + + +KG+
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P+   +  L     K G+ D    + EKM
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 181/387 (46%), Gaps = 22/387 (5%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S+I+   +   +   + L++ M  + ++  + T+  ++    + ++VEEA   F+
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            +++ GV  N+  +  L+   CK+  V +A  + + M  +  +P+S T++ L+ G   D 
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  +MV  G  P + T  I++  L K G  D A    + M S+  +P +  Y+
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
             + TY  E R+ DA D   +M +NG+  D+  Y++LI  +    +    + VLK M   
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDT 701

Query: 335 GVAPNSRTCNIILNGLI------GRG------------ETDEAYRVFRRMIKLC-EADAD 375
           G  P+  T   ++  L+       +G            E D    +  +M++     +A 
Sbjct: 702 GCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAK 761

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLED 434
           +Y  +I   C+ G L  A KV+ +M+    I PS   F+ L++  C     +++  +++D
Sbjct: 762 SYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDD 821

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRED 461
           MI  G  P  E+   L   L K+G ++
Sbjct: 822 MICVGHLPQLESCKVLICGLYKKGEKE 848



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 163/416 (39%), Gaps = 94/416 (22%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y SMI+SL K ++ +   DL +++  K +  NV  +  ++  Y +  KV+EA      M
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEI----------------------------F 189
                  N   FN L+  LC    +++A  +                            F
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618

Query: 190 DCMKDRFI--------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           D    RF         PD+ TY+  ++ + ++  L  A ++  +M + G +PD+ TY  +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPT-----SFIYSVLVHTYG--------------- 281
           +      G+ + A  ++K M  T C P+     S I  +L   YG               
Sbjct: 679 IKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNM 738

Query: 282 ---------VENRIEDAVD------------------------TFLEMEKN-GILADVAM 307
                    +E  +E +V                          F  M++N GI     +
Sbjct: 739 MEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV 798

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           +NAL+   CK  K     +V+ DM   G  P   +C +++ GL  +GE +    VF+ ++
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858

Query: 368 KLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           + C    D   + ++I    + G +E  ++++  M+      S  T+S+LI G  D
Sbjct: 859 Q-CGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEGPPD 913


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 182/366 (49%), Gaps = 6/366 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y +MI+ LAK   + +   L++ MR + + ++ +    ++R+Y R +   EA   F  M+
Sbjct: 147 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 206

Query: 159 KYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           +YG    + A    LL AL K +   +AQ +FD  K  F PD   Y+ L+  W +   L 
Sbjct: 207 EYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRLN 266

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +F EM   G  P++ TY  ++D + +AG+V  A  ++  M  + C P +  ++ ++
Sbjct: 267 EAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIM 326

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK--FKNVYRVLKDMNSKG 335
             +    R E  +    +M + G   D+  YN L+   C   +       ++L  M +KG
Sbjct: 327 RAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKG 386

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             P+  T N +L  ++  G  + A +++ RM +L C+ +  TY +++++F     ++   
Sbjct: 387 CIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVL 446

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKL 453
           ++ K M  +   P+++T++ LI   C +G    + + L +M+ EK ++P+   +  +  L
Sbjct: 447 RIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLAL 506

Query: 454 LIKEGR 459
           L K G+
Sbjct: 507 LRKAGQ 512



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 7/337 (2%)

Query: 147 VEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205
           + EAV  F+ V+         A +  ++  L K  +   A+ + D M++R +P S    +
Sbjct: 124 LPEAVAFFHHVLPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLIL 183

Query: 206 LLEGWGKDPNLP-RAREIFREMVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            L        +P  A ++FR M + G   PD  T   ++  L K     EA  +  S  S
Sbjct: 184 ALIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKS 243

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
            V  P   +Y+ LVH +    R+ +A   F EM++ G+  +V  Y A+I A  +A +   
Sbjct: 244 -VFTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPR 302

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
              +L  M   G  PN+ T N I+   +  G +++  +V  +M +L CE D  TY  +++
Sbjct: 303 AQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLME 362

Query: 383 MFCQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             C  G+  L+ A K+   M  K  IP  HTF+ ++  +   G V+ +  L E M E   
Sbjct: 363 THCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQC 422

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +P+  T+  L +L   E   D++  +++ M+    EP
Sbjct: 423 KPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEP 459


>gi|357137261|ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 488

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 212/429 (49%), Gaps = 20/429 (4%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA-EKQQNYEHSVRAY 100
           +L+SP   ++ ALD + +RV+   VE VL         A  FF+WA  +   ++HS  ++
Sbjct: 49  ILASPATDVEAALDDAAVRVTTSDVEQVLRFSYAHPRGAAAFFRWAGHRHLRHQHSPYSW 108

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           + +I+ L K R +  MWD V++MR++ +L++ +F  +    A    V   +  F  M KY
Sbjct: 109 NLVIDLLGKNRLFDPMWDTVSSMRSQGLLSLASFASVFSSLA-ADPVSSPLKAFVDMPKY 167

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEG--WGKDPNL 216
           G+ ++  A N LLSALC++  +  A+      +      PD+ +Y+ILLEG     DP +
Sbjct: 168 GMDRDTPALNSLLSALCRASRLDDARAAIPVARAEASTRPDADSYAILLEGCEAAGDPAV 227

Query: 217 PRAREIFREMV-----DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP-TS 270
             ARE+F EMV     D    P   ++   +        + EA+  +  +    C P   
Sbjct: 228 --AREVFDEMVRHVGFDPANVPAYDSFLTTLVSSSSTTALTEAMDYLAVLRRYRCSPGEK 285

Query: 271 FIYSVL-VHTYGVENRIEDAV-DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           F+ + L  H    + R    + D F+   + G++ D  MY+++I         + +   +
Sbjct: 286 FLRAALAAHLKAQDLRGAQVLWDDFV--VRLGLIPDKEMYSSMIMLQGTLGHAEVIVEYV 343

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387
            DM   GV P++ T N++L  L+   +  EA  +FR M+K  C  +    ++ ++MF   
Sbjct: 344 DDMAFYGVFPDADTYNMVLKLLLKGRKLREASAIFREMVKNECWPNEANCSLALRMFLDT 403

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            + E   KVW  M      P   + ++L++ L D+ ++ ++C   EDMI++GI+ S  T 
Sbjct: 404 RDWETGIKVWNCMVANGLPPLEESGNMLVSKLKDE-MLPEACKYAEDMIDQGIKVSSSTL 462

Query: 448 GKLRKLLIK 456
           GKLR  L+K
Sbjct: 463 GKLRLCLVK 471


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 182/354 (51%), Gaps = 4/354 (1%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+   F  +M  + R   +  A   F+ MQK G+  +   +  L++ LC++  +++A+ 
Sbjct: 352 VLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAER 411

Query: 188 IFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M+D+ +  D+ TY++L++G+ K   +  A  +  +MV     P++VTY  + D LC
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G V  A  ++  M S       F Y+ L++       +E A+ T ++M++ G+  DV 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  +IGA C++ +    + +L++M  KG+ P   T N+++NG    G  +   R+   M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           + K    +  TY  ++K +C    ++   +++K M  +  +P+ +T+++LI G C    +
Sbjct: 592 LEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNM 651

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM--NLLVKEP 477
            ++     +MIEKG R +  ++  L +LL K+ +    + L EKM    L  EP
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEP 705



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 25/425 (5%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY--- 93
           S   ++L  P   L   L Q GI  SPE    VL           C     E  Q +   
Sbjct: 200 SFDLLLLCLPSAPLLLRLRQYGISPSPESCNAVL-----------CRLPLDEAVQLFQEL 248

Query: 94  -EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
            E +  +Y+ ++++L    + +    L + M +    +V T+ I++  Y  + ++E A+ 
Sbjct: 249 PEKNTCSYNILLKALCTAGRIKDAHQLFDEMASPP--DVVTYGIMVHGYCTLSELETAIK 306

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             + M   G+  N  A+  +++ LC    V  A  +  D +    + D+  ++ ++ G+ 
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +  +L  AR  F EM   G   D VTY  +++ LC+AG + EA  +++ M+       + 
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+VL+  Y    ++ +A     +M +  +  +V  Y AL    CK         +L +M
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA----DADTYTMMIKMFCQG 387
            SKG+  N  T N ++NGL   G  ++A R    MI + EA    D  TYT +I   CQ 
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRT---MIDMDEAGLKPDVYTYTTIIGALCQS 543

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            EL++A  + + M  K   P++ T++VL+NG C  G V     LLE M+EK I P+  T+
Sbjct: 544 KELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 448 GKLRK 452
             L K
Sbjct: 604 NSLMK 608



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 3/300 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  +I+   K+ +    + + N M  KR+  NV T+  +     +   V  A    + M 
Sbjct: 428 YTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMC 487

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G+  N+  +N L++ LCK+ N+ +A + + D  +    PD  TY+ ++    +   L 
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELD 547

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           RA  + +EM+D G  P IVTY ++++  C +GRV+    +++ M      P +  Y+ L+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y +E  ++   + +  M    ++ +   YN LI   CKA   K       +M  KG  
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKV 396
             + + N ++  L  + +  EA R+F +M K    A+ D Y   I +      LE    +
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLAL 727



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 286 IEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +++AV  F E+ EKN        YN L+ A C A + K+ +++  +M S    P+  T  
Sbjct: 238 LDEAVQLFQELPEKN-----TCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYG 289

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I+++G     E + A ++   M  +  E +   YT +I + C  G++  A +V + M + 
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH 349

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR---- 459
             +     F+ +++G C KG ++ +    ++M ++G+   G T+  L   L + G     
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409

Query: 460 EDVLKFLQEK 469
           E VL+ +++K
Sbjct: 410 ERVLQEMEDK 419



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I +L + ++      L+  M  K +   + T+ ++M  +    +VE       
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M +  +  N   +N L+   C  KN++   EI+  M     +P+  TY+IL++G  K  
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           N+  A     EM++ G      +Y  ++ +L K  +  EA  + + M
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 184/355 (51%), Gaps = 3/355 (0%)

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           W   N  ++K +L+V +F I+++      ++E++      + ++G + N+  +  L+   
Sbjct: 149 WSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGC 208

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK   + KA+++F  M K   + + +TY++L+ G  K+    +  E++ +M + G  P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY  +++ LCK GR  +A  +   M           Y+ L+     E ++ +A     +
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+ +GI  ++  YN LI  FC   K      + +D+ S+G++P+  T NI+++G   +G+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD 388

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           T  A ++ + M  +  +    TYT++I  F +   +EKA ++   M+    +P +HT+SV
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSV 448

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQE 468
           LI+G C KG ++++  L + M+EK   P+   +  +     KEG     LK L+E
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 180/354 (50%), Gaps = 3/354 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +  +V  Y ++I+   K  + +   DL   M +   + N  T+ +++    +    ++  
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGF 253

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW 210
             +  MQ+ GV  NL  +N +++ LCK    + A ++FD M++R +  +  TY+ L+ G 
Sbjct: 254 EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGL 313

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++  L  A ++  +M   G NP+++TY  ++D  C  G++ +AL + + + S    P+ 
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++LV  +  +     A     EME+ GI      Y  LI  F +++  +   ++   
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M   G+ P+  T +++++G   +G+ +EA R+F+ M+ K CE +   Y  MI  +C+ G 
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             +A K+ K M+ K   P++ ++  +I  LC +    ++  L+E MI+ GI PS
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPS 547



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 161/313 (51%), Gaps = 1/313 (0%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +I+  Y + Q +  ++  FN M   G       FN LL+ +  S +  +    F+  K +
Sbjct: 99  VIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSK 158

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
            + D  ++ IL++G  +   + ++ ++  E+ + G +P++V Y  ++D  CK G +++A 
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M           Y+VL++        +   + + +M+++G+  ++  YN ++   
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADA 374
           CK  + K+ ++V  +M  +GV+ N  T N ++ GL    + +EA +V  +M       + 
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I  FC  G+L KA  + + +K +   PS+ T+++L++G C KG  S +  ++++
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398

Query: 435 MIEKGIRPSGETF 447
           M E+GI+PS  T+
Sbjct: 399 MEERGIKPSKVTY 411



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 35/221 (15%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNG------------------------------- 300
           +Y V++++Y     +  ++  F EM  NG                               
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155

Query: 301 ---ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
              ++ DV  +  LI   C+A + +  + +L ++   G +PN      +++G   +GE +
Sbjct: 156 KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +A  +F  M KL   A+  TYT++I    + G  ++ F++++ M+     P+++T++ ++
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           N LC  G   D+  + ++M E+G+  +  T+  L   L +E
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCRE 316



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +Y  +I ++ ++           +M   G  P S   N +L  ++G    ++ +  F   
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 D  ++ ++IK  C+ GE+EK+F +   +    F P++  ++ LI+G C KG + 
Sbjct: 156 KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +  L  +M + G+  +  T+  L   L K G
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNG 247


>gi|356547448|ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 189/388 (48%), Gaps = 15/388 (3%)

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM- 123
           V   L  F N    A  FF W E+  + + HS   ++ M++ L K  ++++ WDL+  M 
Sbjct: 37  VRQTLLSFNNDWKRALEFFNWVEESHSQFHHSTDTFNLMLDILGKFFEFKLCWDLIRRMN 96

Query: 124 -RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
                  N  TF ++ ++Y     V +A+ TFN + ++ +  +  +F+ LL ALC+ K+V
Sbjct: 97  AHPSSPPNHATFRLMFKRYVSAHSVNDAIDTFNRLGEFNLKDH-TSFSNLLDALCEYKHV 155

Query: 183 RKAQEIFDCMKDRF------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
            +AQ++     +R       I ++K ++++L GW K     +  E + EM   G + D+ 
Sbjct: 156 LEAQDLLFGNDNRVTLSVDPIGNTKIHNMVLRGWFKLGWWSKCNEFWEEMDKKGVHKDLH 215

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y I +D+LCK G+  +A+ + K +     +    +Y++++   G+ + ++ ++  F EM
Sbjct: 216 SYSIYMDILCKGGKPWKAVKLFKEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSIRVFREM 275

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKD-MNSKGVAPNSRTCNIILNGLIGRGE 355
           ++ GI   V  YN LI   C   + K    +L+  M S G  P + + +     +    +
Sbjct: 276 KELGIKPTVVTYNTLIRLLCDCYRHKEALALLRTIMPSDGCHPTAVSYHCFFASM---EK 332

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             +   +F  M++       DTY M++  F + G L   F VW  MK     P    ++ 
Sbjct: 333 PKQILAMFDEMVESGVRPTMDTYVMLLNKFGRWGFLRPVFMVWNKMKQLGCSPDAAAYNA 392

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           LI+ L DK ++  +    E+M+ KG+ P
Sbjct: 393 LIDALVDKALIDMARKYDEEMLAKGLSP 420



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 34/246 (13%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N +   +++R + ++    +    +  M K GV ++L +++  +  LCK     KA ++F
Sbjct: 178 NTKIHNMVLRGWFKLGWWSKCNEFWEEMDKKGVHKDLHSYSIYMDILCKGGKPWKAVKLF 237

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +K + F  D   Y+I++   G    +  +  +FREM + G  P +VTY  ++ +LC  
Sbjct: 238 KEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSIRVFREMKELGIKPTVVTYNTLIRLLCDC 297

Query: 249 GRVDEALGIVKS-MDSTVCRPTSFIYSVLVHTYG------------VENRIEDAVDTFL- 294
            R  EAL ++++ M S  C PT+  Y     +              VE+ +   +DT++ 
Sbjct: 298 YRHKEALALLRTIMPSDGCHPTAVSYHCFFASMEKPKQILAMFDEMVESGVRPTMDTYVM 357

Query: 295 -------------------EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
                              +M++ G   D A YNALI A           +  ++M +KG
Sbjct: 358 LLNKFGRWGFLRPVFMVWNKMKQLGCSPDAAAYNALIDALVDKALIDMARKYDEEMLAKG 417

Query: 336 VAPNSR 341
           ++P  R
Sbjct: 418 LSPKPR 423


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 189/368 (51%), Gaps = 4/368 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    + +    +V  MR      N  T+  ++  + R  +++ A    
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 155 NVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK 212
           ++M++ G  + NL  FN +++ LCK+  +  A+++FD M ++   PD  +Y+ LL G+ K
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 128

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L  +  +F EM   G  PD+VT+  ++   CKAG +++A+ +V  M     R     
Sbjct: 129 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 188

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           ++ L+  +  +  ++DA+    EM K GI   V  YNALI  +CK  +      ++++M 
Sbjct: 189 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 248

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +K V P+  T + I++G    G  D A+++ ++M+K     DA TY+ +I+  C+   L 
Sbjct: 249 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 308

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++++ M      P   T++ LI+G C +G V  +  L ++MI KG+ P   T+  L 
Sbjct: 309 DACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLI 368

Query: 452 KLLIKEGR 459
             L K  R
Sbjct: 369 NGLSKSAR 376



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 202/424 (47%), Gaps = 21/424 (4%)

Query: 61  VSPEIVE--DVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           ++P++V    +L  +   G L      ++E  Q+     V  + S+I +  K    +   
Sbjct: 112 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 171

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            LV  MR + + +N  TF  ++  + +   +++A+     M+K G+  ++  +N L++  
Sbjct: 172 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 231

Query: 177 CKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK   +  A+E+   M+  R  PD  TYS ++ G+ K  NL  A ++ ++M+  G  PD 
Sbjct: 232 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 291

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           +TY  ++  LC+  R+++A  + ++M     +P  F Y+ L+  +  E  +E A+    E
Sbjct: 292 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 351

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS--------------- 340
           M + G+L DV  Y+ LI    K+ + K  +R+L  +  +   P++               
Sbjct: 352 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEF 411

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
           ++   +L G   +G   EA +V++ M+ +  + D   Y+++I   C+GG + KA    K 
Sbjct: 412 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 471

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M    F P+  +   L+ GL ++G+V ++   ++D++        E    L  L  KEG 
Sbjct: 472 MLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGN 531

Query: 460 EDVL 463
            D L
Sbjct: 532 VDAL 535



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 161/352 (45%), Gaps = 38/352 (10%)

Query: 157 MQKYGVTQNL-----------------------------------AAFNGLLSALCKSKN 181
           M ++GV  N+                                     +N L++A C++  
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 182 VRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           +  A+ +   M++     P+  T++ ++ G  K   +  AR++F EMV  G  PD+V+Y 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++   CK G + E+L +   M      P    ++ L+H       +E AV    +M + 
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  +   + ALI  FCK     +    +++M   G+ P+    N ++NG    G  D A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             + R M  K  + D  TY+ +I  +C+ G L+ AF++ + M  K  +P   T+S LI G
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 300

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LC++  ++D+C L E+M++ G++P   T+  L     KEG  +    L ++M
Sbjct: 301 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 352



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 207/483 (42%), Gaps = 59/483 (12%)

Query: 55  DQSGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           D  G   +P  V    ++  F  AG L  A        ++ N + ++  ++SM+  L K 
Sbjct: 35  DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 94

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            + +    + + M R     +V ++  ++  Y +V  + E++  F+ M + G+  ++  F
Sbjct: 95  GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 154

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-------------------------------- 197
             L+ A CK+ N+ +A  +   M++R +                                
Sbjct: 155 TSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 214

Query: 198 ----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
               P    Y+ L+ G+ K   +  ARE+ REM      PD+VTY  ++   CK G +D 
Sbjct: 215 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 274

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  + + M      P +  YS L+     E R+ DA + F  M + G+  D   Y  LI 
Sbjct: 275 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 334

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM------- 366
             CK    +    +  +M  KGV P+  T ++++NGL     T EA+R+  ++       
Sbjct: 335 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 394

Query: 367 -------IKLC--EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                  + LC  +A+  +   ++K FC  G +++A KV++ M  + +      +S+LI+
Sbjct: 395 DNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIH 454

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           G C  G V  +    + M+  G  P+  +   L + L +EG   V++      +LL   P
Sbjct: 455 GHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGM--VVEADNAIQDLLTCCP 512

Query: 478 LCD 480
           L D
Sbjct: 513 LAD 515



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 107/296 (36%), Gaps = 52/296 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I    K+      + L   M  K +L +  T+  ++R     +++ +A   F 
Sbjct: 256 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 315

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK-- 212
            M + GV  +   +  L+   CK  NV KA  + D M +   +PD  TYS+L+ G  K  
Sbjct: 316 NMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSA 375

Query: 213 ---------------DPN---------------------------------LPRAREIFR 224
                          DP                                  +  A ++++
Sbjct: 376 RTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 435

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M+D     D   Y I++   C+ G V +AL   K M  +   P S     LV     E 
Sbjct: 436 SMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEG 495

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
            + +A +   ++     LAD     ALI    K      +  VL  M   G+ P+S
Sbjct: 496 MVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSS 551


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 236/498 (47%), Gaps = 40/498 (8%)

Query: 1   MIKVYHSRNKMISGCISFLR----RYN-SSEPSTEALDAAKS--------ISKI--MLSS 45
           M K + +  +M S  +  LR     +N SSEP   +     S        +SKI  +LSS
Sbjct: 1   MFKHHKTSPRMASHALFSLRGSHQSFNLSSEPHPSSPLPISSTTNPFPELVSKISTILSS 60

Query: 46  PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           PK    + L     ++ P  V ++L+  +N  ++   FF W  +++ ++H +  + SM+ 
Sbjct: 61  PKWEHSSELCHLSPKLKPHHVVNILQTHKNTDSV-LRFFFWISRRKFFKHDMSCFVSMLN 119

Query: 106 SLAKIRQYQ--------IMWDLVNAMRTKRM--------------LNVETFCIIMRKYAR 143
            L + R +         ++    N    KR+                + +F  ++ +  +
Sbjct: 120 RLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGK 179

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
              V+ A   +  M   G+  +L  FN +++ LCK   V++A+ I     +    P++ T
Sbjct: 180 FDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFT 239

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L+ G  ++ NL  A  +F  MV  GC+P+ VTY  +++ LC  GR++EA+ +++ M 
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                PT + Y++ + +        +AV+   +M+K G + ++  + ALI    +  KF+
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMI 381
               +   M + G+ P + T N ++N L   G  + A+ +F+ M+         TY  +I
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           K FC  G+++KA  ++  M      P++ T++ LI G C +G ++++  LLE M   G++
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 442 PSGETFGKLRKLLIKEGR 459
           P   T+ +L     + G+
Sbjct: 480 PDAWTYTELISGFSRGGK 497



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 185/410 (45%), Gaps = 41/410 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L    +++  + +   M +   L + +T+  I++ +  +  +++A+  F+ M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G + N+  +N L+   CK  N+  A  + + MK   + PD+ TY+ L+ G+ +   L
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +F  M++ G +P+ VTY  ++D      +VD+AL +   M  +   P+S  Y+V+
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   N I +A +   +M K G+L +V  Y + I   C+  +    +++  +M  +  
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY 618

Query: 337 APNSRTCNIILNGLI--GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG----- 388
            PN  T + ++ GL   GR E  E Y +  R+    CE + DTYT ++K  C  G     
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEA 678

Query: 389 ------------------------------ELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                                         ++E A  ++  M    F   +  +  LI  
Sbjct: 679 DQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICA 738

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQ 467
           LC +  + ++  + + M+EK        +  L   L+KEG  D+ LK L 
Sbjct: 739 LCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLH 788



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 8/367 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           +++ + ++I  L++  +++I   L + M    ++    T+  ++ +     + E A   F
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M  +G   +   +N ++   C   +++KA  IFD M K    P+  TY+ L+ G+ K 
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            NL  A  +   M   G  PD  TY  ++    + G+++ A  +   M      P    Y
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  Y    +++DA+  F +M ++G L     YN +I  F K N           M  
Sbjct: 521 TAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVK 580

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEK 392
           +G+ PN  T    ++GL   G T  A+++F  M K     +  TY+ +I   CQ G  E 
Sbjct: 581 QGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAED 640

Query: 393 AFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A       +L  +   P++ T++ L+ GLC +G   ++  L+  M +KG++PS E +   
Sbjct: 641 AEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIY--- 697

Query: 451 RKLLIKE 457
           R LLI E
Sbjct: 698 RALLIGE 704



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 175/421 (41%), Gaps = 41/421 (9%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           LAF  F    K     +SV  Y ++I  L    + +   D++  M  K +   V T+ I 
Sbjct: 255 LAFAMFDRMVKDGCDPNSV-TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIP 313

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRF 196
           +          EAV     M+K G   N+  F  L+S L +      A  ++  M  D  
Sbjct: 314 LVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL 373

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P + TY+ L+     +     A  IF+ M+  G  P   TY  ++   C  G + +A+ 
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV 433

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           I   M      P    Y+ L++ Y  +  + +A+     M+ NG+  D   Y  LI  F 
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFS 493

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-------- 368
           +  K ++   +   M   G++PN  T   I++G     + D+A  +F +M++        
Sbjct: 494 RGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 369 --------------LCEAD--------------ADTYTMMIKMFCQGGELEKAFKVWKYM 400
                         + EA+                TYT  I   C+ G    AFK++  M
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCV--LLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           + + + P+++T+S LI GLC +G   D+ +  LL  +   G  P+ +T+  L K L  EG
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673

Query: 459 R 459
           R
Sbjct: 674 R 674



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 16/337 (4%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFC---FFKWAEKQQNYEHSVRAYHSMIE---SLAKI 110
           +G++       +++  F   G L      F+   E   +  H    Y ++I+   +LAK+
Sbjct: 476 NGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT--YTAIIDGYFNLAKV 533

Query: 111 RQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
                + W +V    +  + + +T+ +++  +++   + EA      M K G+  N+  +
Sbjct: 534 DDALALFWKMV---ESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAR--EIFREM 226
              +  LC++     A +IF  M+ R + P+  TYS L+ G  ++     A    +   +
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              GC P++ TY  +V  LC  GR  EA  +V SM     +P+  IY  L+       ++
Sbjct: 651 THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKV 710

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           E A++ F  M+  G    ++ Y ALI A CK N  +    + + M  K    +     ++
Sbjct: 711 ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVL 770

Query: 347 LNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIK 382
           L+GL+  GETD   ++   M  + C  +  TY M+ +
Sbjct: 771 LDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAR 807



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+  MI + C+ G +++A  +  ++      P+  T++ LI G C    +  +  + + M
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           ++ G  P+  T+  L   L  EGR E+ +  L+E
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 198/436 (45%), Gaps = 85/436 (19%)

Query: 67  EDVLEKFRN--AGTLAFCFFKWAEKQQNYEHSVRAYHSMI-------------------- 104
           +DV+    N  +  LA   FKWA +Q++++H+V  Y++ +                    
Sbjct: 5   DDVIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDML 64

Query: 105 --ESLAKIRQYQIMW-------------DLVNAMRTKRMLNVETFCIIM----------- 138
             E L  I  Y I+              +L+  M +K ML   TF + M           
Sbjct: 65  YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESK-MLTPTTFIVNMLVSCLCKNGKV 123

Query: 139 ----RKYARVQ---------------------KVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
                 Y R+                      +++ A+  F  M++  V  +L  +NGLL
Sbjct: 124 DAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLL 183

Query: 174 SALCKSKNVRKAQEIFDCMKD-----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
              C++  + +A  + + M +       +PD  +Y+ ++ G+ K   LP AR + R M+ 
Sbjct: 184 YGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIK 243

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +GC+P++VT+  ++D LC  G++DEA  + + M    C PT+  Y+VL+  +    RI+ 
Sbjct: 244 SGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDK 303

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A D F++M + G+  +V  Y ALIG  C ANK ++   +LK M+S G  PN  T   ++ 
Sbjct: 304 ANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIG 363

Query: 349 GLIGRGETDEAYRVFR-----RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            L   G+ + A ++F      R  K C+ D+  Y+ ++   C+  +  +A++ +  M   
Sbjct: 364 ALCKGGQIERATKLFNDAMGSRTAK-CKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVES 422

Query: 404 RFIPSMHTFSVLINGL 419
           + +   H +  + +GL
Sbjct: 423 KLVAKPHIYKAMADGL 438



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 117/260 (45%), Gaps = 39/260 (15%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++  ++  + + +++  A Y    M K G + N+  FN LL  LC +  + +A  +F+ M
Sbjct: 217 SYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +R   P + TY++L+ G  +   + +A + F +M+  G  P++ TY  ++  LC A +V
Sbjct: 277 VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKV 336

Query: 252 DEALGIVKSMDST--------------------------------------VCRPTSFIY 273
           ++AL I+K M ST                                       C+P S+ Y
Sbjct: 337 EDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAY 396

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S +V+    +++  +A + FL M ++ ++A   +Y A+        + + V RV  + ++
Sbjct: 397 STIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERVCLEASA 456

Query: 334 KGVAPNSRTCNIILNGLIGR 353
            G+    +     LN  + R
Sbjct: 457 HGIELQQKDAPQPLNPHLPR 476



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           T F Y+  ++          A   F +M     L ++  Y  ++   C   K      +L
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388
           +DM SK + P +   N++++ L   G+ D AY +++R+   C  D  +Y M+    C+  
Sbjct: 96  QDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSLDRISYNMLTYGLCKAD 155

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           ++++A  V+  M+    +PS+ T++ L+ G C  G +  +  LLE+MIE
Sbjct: 156 QIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIE 204



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY   +    +GG   KA K++  M  K  +P+++T+ +++ GLCD      +  LL+DM
Sbjct: 39  TYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDM 98

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
             K + P+      L   L K G+ D    L ++++
Sbjct: 99  ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLS 134


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 182/365 (49%), Gaps = 3/365 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S+I+   K  + + +  LV+ MR      +V T+  ++  +++   +E+A   F 
Sbjct: 234 VVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFG 293

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M++ GV  N+   +  + A CK   VR+A ++F  M+ R  +P+  TY+ L++G  K  
Sbjct: 294 EMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 353

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  EMV  G  P++VTY +MVD LCK G+V  A  ++  M+    +    +Y+
Sbjct: 354 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYT 413

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H + +    E A+D   EM+  G+  DV++Y  LI   CK  K      +L  M+  
Sbjct: 414 TLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDC 473

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+ PN+     I++     G+  EA  +  ++     + +  TY  +I   C+ G + +A
Sbjct: 474 GLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEA 533

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
              +  M+     P++  ++ LI+G C  G +S +  L+ +M++KG+      +  L   
Sbjct: 534 ISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDG 593

Query: 454 LIKEG 458
            +K+G
Sbjct: 594 HMKQG 598



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 165/377 (43%), Gaps = 16/377 (4%)

Query: 107 LAKIRQYQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           L+ +  + ++ D V A+   R L    N  T   I+ + AR ++       F  +     
Sbjct: 140 LSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLP---- 195

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRARE 221
             N+  FN ++  LCK   + +A+ +F  MK     PD  TY+ L++G+GK   L     
Sbjct: 196 APNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVEL 255

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +  EM  +GC  D+VTY  +++   K G +++A      M            S  V  + 
Sbjct: 256 LVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFC 315

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            E  + +A+  F +M   G++ +   Y +L+   CKA +  +   +L +M  +G+ PN  
Sbjct: 316 KEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 375

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T  ++++GL   G+   A  V   M +   +A+   YT +I         E+A  +   M
Sbjct: 376 TYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEM 435

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           K K     +  +  LI GLC    + ++  LL  M + G+RP+   +  +     K G+E
Sbjct: 436 KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKE 495

Query: 461 DVLKFLQEKMNLLVKEP 477
                  E + LL K P
Sbjct: 496 ------SEAVALLHKIP 506



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 182/436 (41%), Gaps = 59/436 (13%)

Query: 40  KIMLSSPKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAG---------TLAFCF--FKWA 87
           K M  SP VV  ++ +D  G     E VE ++ + R +G          L  CF  F W 
Sbjct: 226 KAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWI 285

Query: 88  EKQQNY---------EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCII 137
           EK  +Y           +V    + +++  K    +    L   MR + M+  E T+  +
Sbjct: 286 EKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSL 345

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +    +  ++++A+   + M   G+  N+  +  ++  LCK   V  A ++   M+   +
Sbjct: 346 VDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGV 405

Query: 198 PDSKT-YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             ++  Y+ L+ G   + N  RA ++  EM + G   D+  YG ++  LCK  ++DEA  
Sbjct: 406 KANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKS 465

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTY---GVENR---------------------------- 285
           ++  MD    RP + IY+ ++  +   G E+                             
Sbjct: 466 LLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLC 525

Query: 286 ----IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
               I +A+  F +M + G+  +V +Y  LI  FCK         ++ +M  KG++ +  
Sbjct: 526 KAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKV 585

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
               +++G + +G+   A+ +  +MI+   + D   YT  I  FC    +++A  V   M
Sbjct: 586 VYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM 645

Query: 401 KLKRFIPSMHTFSVLI 416
                 P    ++ LI
Sbjct: 646 IGTGITPDKTAYNCLI 661



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 2/247 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K +  E  V  Y ++I  L K+++      L++ M    +  N   +  IM  + +  K 
Sbjct: 436 KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKE 495

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EAV   + +   G+  N+  +  L+  LCK+ ++ +A   FD M++  + P+ + Y+ L
Sbjct: 496 SEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTL 555

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+ K  +L +A  +  EMVD G + D V Y  ++D   K G +  A  +   M  T  
Sbjct: 556 IDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGL 615

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +   + Y+  +  +   N +++A     EM   GI  D   YN LI  + K    +    
Sbjct: 616 QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASS 675

Query: 327 VLKDMNS 333
           +  +M S
Sbjct: 676 LQNEMES 682



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 36/172 (20%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+C ++    +   + EA+  F+ M++ G+  N+  +  L+   CK  ++ KA  + 
Sbjct: 513 NVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLM 572

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLP------------------------------- 217
           + M D+ +  D   Y+ L++G  K  +L                                
Sbjct: 573 NEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNM 632

Query: 218 ----RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
                AR +  EM+ TG  PD   Y  ++    K G ++EA  +   M+S +
Sbjct: 633 NMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESVL 684



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 68/234 (29%)

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL--------NGLIGR---- 353
           ++++ L+          +  R L  +    V PN+RTCN IL         GL+ R    
Sbjct: 134 SVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEH 193

Query: 354 -------------------GETDEAYRVFRRMIKL------------------------- 369
                              GE  EA  +F RM  +                         
Sbjct: 194 LPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEV 253

Query: 370 -----------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                      C AD  TY  +I  F + G +EKA+  +  MK    + ++ T S  ++ 
Sbjct: 254 ELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDA 313

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            C +G+V ++  L   M  +G+ P+  T+  L     K GR +D +  L E ++
Sbjct: 314 FCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 367


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 185/371 (49%), Gaps = 13/371 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y  M+    K      M DL+N M    +  N   F  ++  YA+   ++E ++ F
Sbjct: 469 SVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIF 528

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M++ G++ N+  +  L+ ALCK   V  A   F+ M +  + P++  ++ L+ G    
Sbjct: 529 IKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTV 588

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               +  E+F EM++ G  PDIV +  ++  LCK GRV EA  ++ SM     +P    Y
Sbjct: 589 DKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISY 648

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +   +R+++AV     M   G+  ++  YN L+  +CKA +  N Y + ++M  
Sbjct: 649 NTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLR 708

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------LCEADADTYTMMIKMFCQG 387
           KGV P   T N ILNGL   G   EA  ++  MIK      +C     TY++++  FC+ 
Sbjct: 709 KGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSIC-----TYSIILDGFCKN 763

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
              ++AFK+++ +        + TF+++I+GL   G   D+  L   +   G+ PS  T+
Sbjct: 764 NCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTY 823

Query: 448 GKLRKLLIKEG 458
             + + LI+EG
Sbjct: 824 RLIAENLIEEG 834



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 175/350 (50%), Gaps = 9/350 (2%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVM---QKYGVTQNLAAFNGLLSALCKSKNVRKA 185
           L V ++  +++     ++ EEA    ++M   Q    + ++ ++N +++       V KA
Sbjct: 153 LGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKA 212

Query: 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
             +F  ++    PD  TY+ +++G  K   + RA ++F++MV+ G  P+ VTY  ++D L
Sbjct: 213 YSLF--LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGL 270

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CKA  VD A G+ + M     +P++  Y+ ++        ++ A   F +M   G+  D 
Sbjct: 271 CKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDH 330

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN +I   CKA        V + M  KGV P++ T  II++GL      D A  VF++
Sbjct: 331 VTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQ 390

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           MI K  + +  TY  +I  +   G+ E+  +  K M      P + T+ +L++ LC  G 
Sbjct: 391 MIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGK 450

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474
            +++  L + MI KGI+PS   +G    +L   G++  L  + + +NL+V
Sbjct: 451 CNEARSLFDSMIRKGIKPSVTIYG---IMLHGYGKKGALSEMHDLLNLMV 497



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 198/450 (44%), Gaps = 79/450 (17%)

Query: 90  QQNYEHSVR----AYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYAR 143
           QQ  E  V+     Y+++I+ L K ++  +   +   M  K  +  NV T+  I+    +
Sbjct: 249 QQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNV-TYNTIIDGLCK 307

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
            Q V+ A   F  M   GV  +   +N ++  LCK++ + KA+ +F  M D+ + PD+ T
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLT 367

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGC------------------------------- 231
           Y+I+++G  K  ++ RA  +F++M+D G                                
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMS 427

Query: 232 ----NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
                PD+ TYG+++D LCK G+ +EA  +  SM     +P+  IY +++H YG +  + 
Sbjct: 428 AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALS 487

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +  D    M  NGI  +  ++N +I A+ K      V  +   M  +G++PN  T   ++
Sbjct: 488 EMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLI 547

Query: 348 NGLIGRGETDEAYRVFRRMIK----------------LCEAD--ADTYTMMIKMFCQGGE 389
           + L   G  D+A   F +MI                 LC  D       + ++M  QG  
Sbjct: 548 DALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607

Query: 390 LEKAF---------KVWKYMKLKRFI---------PSMHTFSVLINGLCDKGIVSDSCVL 431
            +  F         K  + M+ +R I         P + +++ LI+G C    + ++  L
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           L+ M+  G++P+  ++  L     K GR D
Sbjct: 668 LDGMVSAGLKPNIVSYNTLLHGYCKAGRID 697



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 147/319 (46%), Gaps = 40/319 (12%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + R+ ++E     F ++ K G   +    N LL  LC +K V +A  +    
Sbjct: 86  TYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHV---- 141

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
                                        + R+M + GC   +V+Y  ++  LC   R +
Sbjct: 142 -----------------------------LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAE 172

Query: 253 EALGIVKSM---DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           EA  ++  M     + C P    Y+++++ +  E +++ A   FLEM   G+  DV  YN
Sbjct: 173 EARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYN 229

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
            +I   CKA +      V + M  KGV PN+ T N I++GL    E D A  VF++M+ K
Sbjct: 230 TIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDK 289

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             +    TY  +I   C+   +++A  V++ M  +   P   T++ +I+GLC    +  +
Sbjct: 290 GVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKA 349

Query: 429 CVLLEDMIEKGIRPSGETF 447
             + + MI+KG++P   T+
Sbjct: 350 EGVFQQMIDKGVKPDNLTY 368



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 120/257 (46%), Gaps = 2/257 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++  ++  +    +++EAV   + M   G+  N+ ++N LL   CK+  +  A  +F
Sbjct: 644 DVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLF 703

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + ++    P  +TY+ +L G  +      ARE++  M+ +     I TY I++D  CK 
Sbjct: 704 REMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKN 763

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
              DEA  I +S+ S   +     +++++       R EDA+D F  +  NG++  V  Y
Sbjct: 764 NCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTY 823

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
             +     +    + +  +   M   G APNS   N ++  L+ RGE   A     ++  
Sbjct: 824 RLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDE 883

Query: 368 KLCEADADTYTMMIKMF 384
           K    +A T +M+I +F
Sbjct: 884 KNFSLEASTTSMLISLF 900


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 190/369 (51%), Gaps = 4/369 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++  + +V  Y ++I SL+ I   ++   +   M  +    NV TF  +M+ Y    +V 
Sbjct: 277 EKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVL 336

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA+  +N M + G   N+ A+N L+  LC    + +A  +   M ++   P+  TY  L+
Sbjct: 337 EALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALI 396

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K  +L  A EI+ +M+  GC P++V Y  MV+VLC++    +A  +++ M +  C 
Sbjct: 397 DGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCP 456

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  ++  +       R+E A++ F +ME+ G   ++  YN ++    K N+ K    +
Sbjct: 457 PNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALEL 516

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
           + +M  KG+  N  T N I  G    G+ +EA ++  +M +   + DA TY  +   +C 
Sbjct: 517 VTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCM 576

Query: 387 GGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
            G+++ A ++  K     +++P +  ++ L+ G+C++  V ++ + L+ M+ +GI  +  
Sbjct: 577 QGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAA 636

Query: 446 TFGKLRKLL 454
           T+  L + L
Sbjct: 637 TWNALVRGL 645



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 200/416 (48%), Gaps = 10/416 (2%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY--EHSVRAYHSMIESLAKIRQYQI 115
           GI  S ++  +V+  +R  G LA    K   + + +  + +V+ Y+ +++++    ++Q+
Sbjct: 109 GISCSEDLFINVINTYRRVG-LAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQM 167

Query: 116 MWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           +  + + M R  +  NV T+ I+++   +  +V+ A      M   G   ++ ++  ++S
Sbjct: 168 IEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVIS 227

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           ++ K   V +A+E    +  RF P+   Y+ L+ G+ ++  +     +  +MV+ G +P+
Sbjct: 228 SMSKLGKVEEARE----LSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPN 283

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++TY  ++  L   G V+ AL +   M    C P  + ++ L+  Y +  R+ +A++ + 
Sbjct: 284 VITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWN 343

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            M + G   +V  YN LI   C   K      V   M   G +PN  T   +++G    G
Sbjct: 344 RMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403

Query: 355 ETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           +   A  ++ +M+   C  +   YT M+ + C+     +A+ + + M      P+  TF+
Sbjct: 404 DLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFN 463

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             I GLC  G V  +  L   M + G  P+ +T+ ++   L+KE R ++ L+ + E
Sbjct: 464 TFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTE 519



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 181/402 (45%), Gaps = 45/402 (11%)

Query: 62  SPEIVEDVLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +P    DV+ + R      LA  +F+     + ++H+   Y  MIE L +      +  L
Sbjct: 42  TPIKESDVVMRLRTETDIVLASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYL 101

Query: 120 VNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           +  M+ + +   E   I ++  Y RV   E+A+  F  ++++G    +  +N LL A+  
Sbjct: 102 LQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLS 161

Query: 179 SKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
               +  + I+  MK D   P+  TY+ILL+   K+  +  A ++  EM + GC PD+V+
Sbjct: 162 ENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVS 221

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++  + K G+V+EA            R  S  +   V  Y                 
Sbjct: 222 YTTVISSMSKLGKVEEA------------RELSIRFQPNVSVY----------------- 252

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
                      NALI  FC+  K K V+ +L  M  KG+ PN  T + +++ L G G  +
Sbjct: 253 -----------NALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE 301

Query: 358 EAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A  V+ +M ++ C  +  T+T ++K +   G + +A  +W  M  + F P++  ++ LI
Sbjct: 302 LALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLI 361

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +GLC  G + ++  +   M   G  P+  T+G L     K G
Sbjct: 362 HGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 178/368 (48%), Gaps = 6/368 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           E  V +Y ++I S++K+ + +   +L  ++R +   NV  +  ++  + R  KV+E    
Sbjct: 216 EPDVVSYTTVISSMSKLGKVEEAREL--SIRFQP--NVSVYNALINGFCREYKVKEVFLL 271

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
              M + G+  N+  ++ ++S+L    NV  A  ++  M  R   P+  T++ L++G+  
Sbjct: 272 LGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFM 331

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +  A  I+  M + G  P++V Y  ++  LC  G++ EA+ +   M+   C P    
Sbjct: 332 RGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVST 391

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y  L+  +     +  A + + +M  NG + +V +Y +++   C+++ F   + +++ M+
Sbjct: 392 YGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMS 451

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +    PN+ T N  + GL   G  + A  +F +M +  C  +  TY  ++    +   ++
Sbjct: 452 TDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIK 511

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A ++   M+ K    ++ T++ +  G C+ G   ++  LL  M+  G++P   T+  L 
Sbjct: 512 EALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLT 571

Query: 452 KLLIKEGR 459
                +G+
Sbjct: 572 YAYCMQGK 579



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           TY I++E  G++ ++   + + ++M   G  C+ D+     +++   + G  ++AL +  
Sbjct: 81  TYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFIN--VINTYRRVGLAEQALKMFY 138

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            +    C+PT  IY+ L+     ENR +     +  M+++G   +V  YN L+ A CK N
Sbjct: 139 RIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNN 198

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379
           +     ++L +M++KG  P+  +   +++ +   G+ +EA  +  R     + +   Y  
Sbjct: 199 RVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRF----QPNVSVYNA 254

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I  FC+  ++++ F +   M  K   P++ T+S +I+ L   G V  +  +   M  +G
Sbjct: 255 LINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRG 314

Query: 440 IRPSGETFGKLRKLLIKEGR 459
             P+  TF  L K     GR
Sbjct: 315 CSPNVYTFTSLMKGYFMRGR 334



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIES 106
           V + + ++++G   +      +++ F  AG L      W +   N    +V  Y SM+  
Sbjct: 374 VSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNV 433

Query: 107 LAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L +   +   W L+  M T     N  TF   ++      +VE A+  F  M++YG + N
Sbjct: 434 LCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPN 493

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +N +L  L K   +++A E+   M+++ +  +  TY+ +  G+        A ++  
Sbjct: 494 IKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLG 553

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVE 283
           +M+  G  PD +TY  +    C  G+V  A+ ++  + +     P    Y+ L+  +G+ 
Sbjct: 554 KMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLL--WGIC 611

Query: 284 NRI--EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           N+I  E+AV    +M   GI  + A +NAL+     +        +L D+ + G
Sbjct: 612 NQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNSLGHLGPIHILDDILTSG 665


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 195/425 (45%), Gaps = 43/425 (10%)

Query: 60   RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
            ++S +IV DVL   R+       FF+W   +  Y H+  A++ ++E L   RQY+    +
Sbjct: 1625 KLSTDIVVDVLNHARDVEP-TIQFFEWCHGRHGYTHTAFAFNRLLEFLVNKRQYKRAHQM 1683

Query: 120  VNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN------------ 165
            + A         N  T+  I+R Y    +  +A+     M+K  V  N            
Sbjct: 1684 LIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLC 1743

Query: 166  -----------------------LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSK 201
                                   +  +N L++ALCK   +  AQ + + M+ R  P D  
Sbjct: 1744 KHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIV 1803

Query: 202  TYSILLEGWGKDPN----LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
            TY+ L+ G  +  N    + RA  +F EMVD G  P  VTY +++D L +    ++A  +
Sbjct: 1804 TYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKV 1863

Query: 258  VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            +  M    C      Y++L++ +     ++ A+D F+EM   G + DV  YN+++  FCK
Sbjct: 1864 LDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCK 1923

Query: 318  ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
            A K +   ++  +M ++G+ PN RT   I +  +  G   +A+     M K    DA +Y
Sbjct: 1924 AGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISY 1983

Query: 378  TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
              +I   C+ G+ +  F++ + M  K F P++ TF+V+   L  +    D+ ++++++ +
Sbjct: 1984 VALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQ 2043

Query: 438  KGIRP 442
            +   P
Sbjct: 2044 QHSSP 2048



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 161/330 (48%), Gaps = 12/330 (3%)

Query: 159  KYGVTQNLAAFNGLLSALCKSKNVRKAQE--IFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
            ++G T    AFN LL  L   +  ++A +  I +     F  ++ TYS ++ G+ +D   
Sbjct: 1654 RHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAESKPSSFQANAFTYSTIVRGYCEDGET 1713

Query: 217  PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             +A  +   M       +   Y I++  LCK G+  EAL ++ SM +T C P  + Y++L
Sbjct: 1714 RQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNIL 1773

Query: 277  VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN----KFKNVYRVLKDMN 332
            ++      R+EDA      M+      D+  YN LI   C+      + +  +R+ ++M 
Sbjct: 1774 INALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMV 1833

Query: 333  SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELE 391
             KG  P S T  ++++ L+     ++A +V   M +  C  D  TY M+I  F + G ++
Sbjct: 1834 DKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMD 1893

Query: 392  KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            KA  ++  M  +  IP + T++ +++G C  G V ++  L  +M  +GI P+G T+  + 
Sbjct: 1894 KAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSIT 1953

Query: 452  KLLIKEGR-EDVLKFLQEKMNLLVKEPLCD 480
               +K GR +D   +L E    + KE L D
Sbjct: 1954 DACLKAGRMQDAHAYLVE----MRKEGLVD 1979


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 189/381 (49%), Gaps = 14/381 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V+ ++ +I  L K+ +      LV+ M  +    +  T+  ++    R+ K+ EA     
Sbjct: 288 VQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEAR---K 344

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKD 213
           ++ K     N A  N L++    S  +++AQ   +   +   F PD  TY+IL+ G  K+
Sbjct: 345 ILIKIPCPNN-AILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKE 403

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  AR++  EM   GC P+++TY I+V+ LCKAG ++EA  ++  M +      S IY
Sbjct: 404 GSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIY 463

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+     + ++  A++   EM   G   D+  YN+LI   CK ++    +R+  +M  
Sbjct: 464 NCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLL 523

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G   N+ T N +++ L+ RG   +A  +   M+ + C  D  TY  +IK FC+ G +EK
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEK 583

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             ++++ M +        + +++INGLC  G V ++   L D I +G  P   T+  +  
Sbjct: 584 GLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLN 643

Query: 453 LLIKEGREDVLKFLQEKMNLL 473
            L K GR      ++E +NL 
Sbjct: 644 GLCKVGR------IKEALNLF 658



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 192/411 (46%), Gaps = 43/411 (10%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           T L +S I ++P  +  +LE   +  TL    F+    Q+ Y H+   Y+  I  L  I 
Sbjct: 68  TKLRKSHILITPVQLCKLLELPLDVPTL-LEIFERVGGQKGYCHTFDVYYVFINKLGAIG 126

Query: 112 QYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +++++  L+  M+ + ++  E+ F IIM+ Y +  +  +A+     M+            
Sbjct: 127 KFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAV---------- 176

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW--GKDPNLPRAREIFREMVD 228
                LC+                   P  K+Y ++LE    G  P +  A  +F +M+ 
Sbjct: 177 ----YLCE-------------------PTFKSYDLVLEILVTGNCPQV--ATNVFYDMLS 211

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P + T+GI++  LC    VD A  +++ M    C P S +Y  L+H    +N++ +
Sbjct: 212 KGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSE 271

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+    EM   G + DV  +N +I   CK NK  +  +++  M  +G  P++ T   +L+
Sbjct: 272 ALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLH 331

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIP 407
           GL   G+ +EA ++   +IK+   +      +I  +   G+L++A        +   F P
Sbjct: 332 GLCRIGKLNEARKI---LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQP 388

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            + T+++L++GLC +G +S +  L+ +M  +G  P+  T+  L   L K G
Sbjct: 389 DIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAG 439



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 3/327 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAV 151
           ++  +  Y+ ++  L K        DLVN M R     NV T+ I++    +   +EEA 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAG 445

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
              + M   G+T N   +N L+ ALC+ + V  A  +   M  +   PD  TY+ L+ G 
Sbjct: 446 LVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGL 505

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   +  A  +F  M+  G   + VTY  ++  L + G   +AL +V  M    C    
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDK 565

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+  +     IE  ++ + +M  +G+ AD    N +I   CK  K  N +  L+D
Sbjct: 566 ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRD 625

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
             ++G  P+  T N +LNGL   G   EA  +F R+ ++    DA TY   I   C+ G 
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGM 685

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +  A   +       F+PS  T++VL+
Sbjct: 686 VNDACLFFYRGIENGFVPSNLTWNVLV 712


>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 172/357 (48%), Gaps = 22/357 (6%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHS 96
           +I  ++L +    L   L++  +  +P +V+ VL+   N G  A  FFK  +    Y H 
Sbjct: 41  TIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHV 100

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
             ++   I+   ++R Y+ +W LV+ MRT+R+  N +TF II  +Y    K + A+  F 
Sbjct: 101 SSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFF 160

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNV--------------------RKAQEIFDCMKDR 195
            M ++G  Q+L +FN +L  LCKSK V                    ++A E F  MK R
Sbjct: 161 SMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKR 220

Query: 196 FIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
               D  TY+ ++ G+G    + +A+ +F EM+  G  P + TY   + VLCK   V+ A
Sbjct: 221 KCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENA 280

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + + + M      P S  Y+V++       R+E A++    M+ +    +V +YN +I  
Sbjct: 281 ISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRY 340

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           FC A + +    V + M      PN  T NI+++ +  R ++D      + +I++ E
Sbjct: 341 FCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVE 397



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 129/318 (40%), Gaps = 55/318 (17%)

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
           ++F+  +    + ++ +    + D M+ R + P+ KT++I+ E +       RA +IF  
Sbjct: 102 SSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFS 161

Query: 226 MVDTGCNPDIVTYGIMVDVLCK--------------------AGRVDEALGIVKSMDSTV 265
           M + GC  D+ ++  ++DVLCK                    AG++ EA      M    
Sbjct: 162 MHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKRK 221

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C      Y+ +VH +GV   +  A   F EM   G+L  VA YNA I   CK +  +N  
Sbjct: 222 CEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAI 281

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
            V ++M  KG  PNS T N++                                  I+  C
Sbjct: 282 SVFEEMLRKGYMPNSTTYNVV----------------------------------IRGLC 307

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G +EKA +    MK     P++  ++V+I   CD   +     + E M +    P+ +
Sbjct: 308 HVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLD 367

Query: 446 TFGKLRKLLIKEGREDVL 463
           T+  L   +    + D L
Sbjct: 368 TYNILISAMFVRKKSDYL 385



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 122/285 (42%), Gaps = 32/285 (11%)

Query: 199 DSKTYSILLEGWGKD--PNL------------PRAREIFREMVDTGCNPDIVT-YGIMVD 243
           DS+T +  LE +  +  PNL            P+A + F+ +        + + +   +D
Sbjct: 50  DSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAID 109

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           +  +         +V  M +    P    ++++   Y    + + A+  F  M ++G + 
Sbjct: 110 IAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQ 169

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D+  +N ++   CK               SK V         +  G    G+  EA+  F
Sbjct: 170 DLNSFNTILDVLCK---------------SKRVEMADNKLFKVFRGFFRAGQLKEAWEFF 214

Query: 364 RRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            +M K  CE D  TYT ++  F   GE+ KA +V+  M  +  +PS+ T++  I  LC K
Sbjct: 215 LQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKK 274

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
             V ++  + E+M+ KG  P+  T+  + + L   GR E  ++F+
Sbjct: 275 DNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFM 319


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 189/381 (49%), Gaps = 14/381 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V+ ++ +I  L K+ +      LV+ M  +    +  T+  ++    R+ K+ EA     
Sbjct: 288 VQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEAR---K 344

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKD 213
           ++ K     N A  N L++    S  +++AQ   +   +   F PD  TY+IL+ G  K+
Sbjct: 345 ILIKIPCPNN-AILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKE 403

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  AR++  EM   GC P+++TY I+V+ LCKAG ++EA  ++  M +      S IY
Sbjct: 404 GSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIY 463

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+     + ++  A++   EM   G   D+  YN+LI   CK ++    +R+  +M  
Sbjct: 464 NCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLL 523

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G   N+ T N +++ L+ RG   +A  +   M+ + C  D  TY  +IK FC+ G +EK
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEK 583

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             ++++ M +        + +++INGLC  G V ++   L D I +G  P   T+  +  
Sbjct: 584 GLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLN 643

Query: 453 LLIKEGREDVLKFLQEKMNLL 473
            L K GR      ++E +NL 
Sbjct: 644 GLCKVGR------IKEALNLF 658



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 192/411 (46%), Gaps = 43/411 (10%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           T L +S I ++P  +  +LE   +  TL    F+    Q+ Y H+   Y+  I  L  I 
Sbjct: 68  TKLRKSRILITPVQLCKLLELPLDVPTL-LEIFERVGGQKGYCHTFDVYYVFINKLGAIG 126

Query: 112 QYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +++++  L+  M+ + ++  E+ F IIM+ Y +  +  +A+     M+            
Sbjct: 127 KFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAV---------- 176

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW--GKDPNLPRAREIFREMVD 228
                LC+                   P  K+Y ++LE    G  P +  A  +F +M+ 
Sbjct: 177 ----YLCE-------------------PTFKSYDLVLEILVTGNCPQV--ATNVFYDMLS 211

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P + T+GI++  LC    VD A  +++ M    C P S +Y  L+H    +N++ +
Sbjct: 212 KGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSE 271

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+    EM   G + DV  +N +I   CK NK  +  +++  M  +G  P++ T   +L+
Sbjct: 272 ALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLH 331

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIP 407
           GL   G+ +EA ++   +IK+   +      +I  +   G+L++A        +   F P
Sbjct: 332 GLCRIGKLNEARKI---LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQP 388

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            + T+++L++GLC +G +S +  L+ +M  +G  P+  T+  L   L K G
Sbjct: 389 DIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAG 439



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 3/327 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAV 151
           ++  +  Y+ ++  L K        DLVN M R     NV T+ I++    +   +EEA 
Sbjct: 386 FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAG 445

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
              + M   G+T N   +N L+ ALC+ + V  A  +   M  +   PD  TY+ L+ G 
Sbjct: 446 LVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGL 505

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   +  A  +F  M+  G   + VTY  ++  L + G   +AL +V  M    C    
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDK 565

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+  +     IE  ++ + +M  +G+ AD    N +I   CK  K  N +  L+D
Sbjct: 566 ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRD 625

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
             ++G  P+  T N +LNGL   G   EA  +F R+ ++    DA TY   I   C+ G 
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGM 685

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +  A   +       F+PS  T++VL+
Sbjct: 686 VNDACSFFYRGIENGFVPSNLTWNVLV 712


>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
          Length = 858

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 217/458 (47%), Gaps = 15/458 (3%)

Query: 31  ALDA-AKSISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNA---GTLAFCFFK 85
           A DA A ++ +++ ++P    +++AL  SG+ +S  +++ VL +FR A      A     
Sbjct: 39  ASDADADAVYRMVTAAPTPSAMESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLS 98

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYAR 143
            A  +     S  A  + +  L + R++  MWDL+ + R      +   T  +++ + A+
Sbjct: 99  LALDRHGVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAK 158

Query: 144 VQKVEEAVYTFN----VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199
           V  V E V +F     +++  G  Q    FN LL  LC+ K++  A+ ++  +K  F  +
Sbjct: 159 VCSVRETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVN 218

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
            +T++ILL GW    +   A     EM + G  PD+VTY  ++D  CK   V+ A  ++ 
Sbjct: 219 RQTFNILLSGWKSAED---AEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLD 275

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      P    Y+ L+   G+  + + A     EM + G   DV  YN  I  F  A 
Sbjct: 276 EMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAK 335

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
           +  + + ++++M SKG+ PN+ T N+         +   A++++ RM  + C  +  +  
Sbjct: 336 RLGDAFALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCM 395

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++++  + G + +A ++W  M    F        VL + LCD+G + ++      MIE 
Sbjct: 396 FIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIEL 455

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           G +PS   F +++ L+    RE+ +  L  +M    +E
Sbjct: 456 GQKPSNVAFRRIKILMQLANREESIARLTAQMAQFGRE 493


>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
 gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 203/416 (48%), Gaps = 3/416 (0%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           K  ++ AL +  + +S ++V +VL +    G     FF WA KQ      V +Y+ +I +
Sbjct: 117 KSGIERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRA 176

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF-NVMQKYGVTQ 164
           L + +    M   ++ +R + + +N ETF I++    R ++V +A+  F N+ +++G  +
Sbjct: 177 LGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFER 236

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  + N LL  LC+  +V  A   F+ +K +   +  TY++++ GW K   +   + +F 
Sbjct: 237 DAESLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFE 296

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM + G +PD +++  +++ L +AG++++A+ I  SM+   C P + +Y+ ++  +    
Sbjct: 297 EMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVG 356

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
             ++ +  +  +       ++  Y  +I    KA+K  +   +  +M  +G+   + T  
Sbjct: 357 NFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVT 416

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
             +  L   G    A  ++ +  K+ C+     Y +++    + G+     K+W  M+  
Sbjct: 417 SFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQES 476

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +   M  +  LI+GLC+ G   ++ +++E+ + KG  PS     KL   L+   +
Sbjct: 477 GYSSDMEVYEYLISGLCNIGQFENAVLVMEESMRKGFCPSRFICSKLNNKLLASNK 532



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 82/190 (43%), Gaps = 1/190 (0%)

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+V++   G    I+  V    E+   G+  +   ++ +I +  +A +     ++  ++ 
Sbjct: 170 YNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLE 229

Query: 333 SK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
            + G   ++ + N++L  L  R     A   F  +      +  TY ++I  + + G + 
Sbjct: 230 EEFGFERDAESLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVS 289

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +  +V++ M+   F P   +FS L+ GL   G + D+ ++   M EKG  P    +  + 
Sbjct: 290 EMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMI 349

Query: 452 KLLIKEGRED 461
              I  G  D
Sbjct: 350 SNFISVGNFD 359



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 3/170 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N++T+  ++    +  KV +A+  F+ M   G+          +  LC       A  I+
Sbjct: 376 NIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIY 435

Query: 190 DCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
              +      S   Y +LL    +        +I+ EM ++G + D+  Y  ++  LC  
Sbjct: 436 TKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNI 495

Query: 249 GRVDEALGIV-KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           G+ + A+ ++ +SM    C P+ FI S L +     N++E A   FL+++
Sbjct: 496 GQFENAVLVMEESMRKGFC-PSRFICSKLNNKLLASNKVERAYRLFLKIK 544


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 182/369 (49%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y+  I  L K ++     ++ N +  K +  +V T+C ++    +V++ E      
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           N M ++G   + AA + L+  L K  N+  A ++ + +K   + P    Y+ L+    KD
Sbjct: 309 NEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   G  P+ VTY I++D  CK G++D AL  +  M     + T + Y
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+  +    ++  A   F EM  NG+  +V +Y +LI  +CK  +  N +R+  +M  
Sbjct: 429 SSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG++PN+ T   +++GL       EA ++F  M++     +  TY ++I+  C+ G   +
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF++   M  K  +P  +T+  LI+GLC  G VS++   + D+  +  + +   F  L  
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLH 608

Query: 453 LLIKEGRED 461
              KEGR D
Sbjct: 609 GYCKEGRLD 617



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 173/369 (46%), Gaps = 44/369 (11%)

Query: 96  SVRAYHSMIES---LAKIRQYQIMWD--LVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           +V  Y S+I     L K+R  + ++D  + N ++     NV  +  ++  Y +  ++  A
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKP----NVVIYTSLISGYCKEGELHNA 479

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEG 209
              ++ M   G++ N   F  L+S LC +  + +A ++F  M +   IP+  TY++L+EG
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG 539

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K+ N  RA E+  EMV+ G  PD  TY  ++  LC  GRV EA   +  +     +  
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN 599

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              +S L+H Y  E R++DA+D   EM   G+  D+  Y+ LI    +    +++  +LK
Sbjct: 600 EMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLK 659

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389
            M+ +G+ P+    N++                              YT MI    + G 
Sbjct: 660 QMHDQGLRPD----NVL------------------------------YTTMIDANAKAGN 685

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           L+ AF +W  M  +  +P++ T++ LINGLC  G++  + +L  +M+     P+  T+  
Sbjct: 686 LKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYAC 745

Query: 450 LRKLLIKEG 458
               L  EG
Sbjct: 746 FLDYLTSEG 754



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 10/336 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  +I  L    +     + +N ++ ++  LN   F  ++  Y +  ++++A+     M
Sbjct: 567 TYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREM 626

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              GV  +L  ++ L+  + + ++ R   ++   M D+ + PD+  Y+ +++   K  NL
Sbjct: 627 LGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNL 686

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++  MV  GC P++VTY  +++ LCK G +D+A  + + M ++   P    Y+  
Sbjct: 687 KMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACF 746

Query: 277 VHTYGVENRIEDAV---DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +     E  IE A+   D  LE    G LA+   YN LI  FCK  + +    VL +M  
Sbjct: 747 LDYLTSEGNIEKAIQLHDVLLE----GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMID 802

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G++P+  + + I+     RG+  EA +++  M+ +    D   Y  +I   C  GEL K
Sbjct: 803 SGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTK 862

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
           AF++   M  +   P+  T++ LI+G C    VS +
Sbjct: 863 AFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSST 898



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 184/421 (43%), Gaps = 19/421 (4%)

Query: 53  ALDQSGIR--VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           AL+ S I   + P  VE VL +  +   LA  FF +    +N++HS  ++  +I +L + 
Sbjct: 47  ALNNSFISQTLKPHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQS 106

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
             Y     L+  +  + +     F   +  Y +        +   ++Q Y   QN    +
Sbjct: 107 NLYWPASSLLQTLLLRGLNPEGLFESFLDSYRKCNFSTTLGFDL-LIQTY--VQNRRELD 163

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           GL+            + + DC     +P  +T S +L G  +      A  +F E+V +G
Sbjct: 164 GLVVV----------RLMMDC---GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+  Y  +V  LC+      A  ++  M+S+ C  +   Y+V +       R+ +AV
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           +    +   G+ ADV  Y  L+   CK  +F+    ++ +M   G  P+    + +++GL
Sbjct: 271 EIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGL 330

Query: 351 IGRGETDEAYRVFRRMIKLCEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             +G    A+ +  ++ K   A +   Y  +I   C+ G+L++A  ++  M  K   P+ 
Sbjct: 331 RKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPND 390

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            T+S+LI+  C +G +  +   L  M E GI+ +   +  L     K G+    K L ++
Sbjct: 391 VTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDE 450

Query: 470 M 470
           M
Sbjct: 451 M 451



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 4/241 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW-AEKQQNYEHSVRAYHSMIESLAKIRQ 112
           +   G+R    +   +++    AG L   F  W     +    +V  Y ++I  L KI  
Sbjct: 661 MHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGL 720

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                 L   M     L N  T+   +        +E+A+   +V+ + G   N   +N 
Sbjct: 721 MDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNI 779

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+   CK   +++A E+   M D  I PD  +YS ++  + +  +L  A +++  M++ G
Sbjct: 780 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 839

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
            NPD V Y  ++   C  G + +A  +   M     +P    Y+ L+H   + + +    
Sbjct: 840 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTA 899

Query: 291 D 291
           D
Sbjct: 900 D 900


>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
 gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
          Length = 531

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 212/447 (47%), Gaps = 14/447 (3%)

Query: 35  AKSISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNA---GTLAFCFFKWAEKQ 90
           A ++ +++ ++P    +++AL  SG+ +S  +++ VL +FR A      A      A  +
Sbjct: 44  ADAVYRMVTAAPTPSAMESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDR 103

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVE 148
                S  A  + +  L + R++  MWDL+ + R      +   T  +++ + A+V  V 
Sbjct: 104 HGVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVR 163

Query: 149 EAVYTFN----VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204
           E V +F     +++  G  Q    FN LL  LC+ K++  A+ ++  +K  F  + +T++
Sbjct: 164 ETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFN 223

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILL GW    +   A     EM + G  PD+VTY  ++D  CK   V+ A  ++  M   
Sbjct: 224 ILLSGWKSAED---AEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREK 280

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ L+   G+  + + A     EM + G   DV  YN  I  F  A +  + 
Sbjct: 281 DISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDA 340

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           + ++++M SKG+ PN+ T N+         +   A++++ RM  + C  +  +   ++++
Sbjct: 341 FALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRL 400

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             + G + +A ++W  M    F        VL + LCD+G + ++      MIE G +PS
Sbjct: 401 CHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPS 460

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
              F +++ L+    RE+ +  L  +M
Sbjct: 461 NVAFRRIKILMQLANREESIARLTAQM 487



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 103/252 (40%), Gaps = 37/252 (14%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           ++   E  +  Y+S+I+   K R  +  + L++ MR K +  +V T+  ++     + + 
Sbjct: 243 RELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIGQP 302

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           ++A +    M + G   ++ A+N  +     +K +  A  + + M  +  +P++ TY++ 
Sbjct: 303 DKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGLMPNATTYNLF 362

Query: 207 LEG--WGKD-----------------PN----------------LPRAREIFREMVDTGC 231
                W  D                 PN                + +A E++ +MV+ G 
Sbjct: 363 FRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGF 422

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
               +   ++ D+LC  G++DEA      M     +P++  +  +     + NR E    
Sbjct: 423 GSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRIKILMQLANREESIAR 482

Query: 292 TFLEMEKNGILA 303
              +M + G LA
Sbjct: 483 LTAQMAQFGRLA 494


>gi|357455405|ref|XP_003597983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487031|gb|AES68234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 193/400 (48%), Gaps = 22/400 (5%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           V    V   L  F N    A  FF W E +  ++HS   Y+ +++ L K  ++Q  W+L+
Sbjct: 74  VDHTTVRATLTSFNNDYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLI 133

Query: 121 NAMRT--KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           + MR     + N  TF ++ ++Y     V++AV TF  + ++ + ++  +F+ L+ ALC+
Sbjct: 134 HRMRQNPHSLPNHTTFRVMFKRYVSAHCVQDAVNTFQRLNEFNL-KDETSFSNLIDALCE 192

Query: 179 SKNVRKAQE-IFDCMK-----------DRFIPDSKT---YSILLEGWGKDPNLPRAREIF 223
            K+V +AQ+ +F   K           D F+  SK    ++I+L GW K     +  E +
Sbjct: 193 YKHVLEAQDLVFGDKKNQTLTWIVDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWEFW 252

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            EM   G   D+ +Y I +D+L K G+  +A+ + K M     +    +Y++++   GV 
Sbjct: 253 DEMDRRGVEKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVS 312

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
             ++ ++  F EM+  G+   V  YN +I   C + ++K    +++ M   G +PN+ + 
Sbjct: 313 QGVDFSIRMFCEMKDLGLNPTVVTYNTIIRLLCDSYRYKEALTLIRTMRRDGCSPNAVSY 372

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
                 L    +      +F  MI+       DTY M++K F + G L   F VW  M+ 
Sbjct: 373 QCFFACL---EKPKFIIELFDGMIESGVRPTMDTYVMLLKKFARWGFLRLVFLVWNRMEE 429

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
               P    ++ LI+ L +KG++  +    E+M+ KG+ P
Sbjct: 430 LGCSPDASAYNALIDALVEKGLIDMARKYDEEMLAKGLSP 469



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 33/245 (13%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N + F I++R + ++    +    ++ M + GV ++L +++  +  L K     KA ++F
Sbjct: 228 NTKIFNIVLRGWYKLGWWSKCWEFWDEMDRRGVEKDLHSYSIYMDILSKGGKPWKAVKLF 287

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK + I  D   Y+I++   G    +  +  +F EM D G NP +VTY  ++ +LC +
Sbjct: 288 KEMKRKGIQLDVVVYNIVIRAIGVSQGVDFSIRMFCEMKDLGLNPTVVTYNTIIRLLCDS 347

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYS----------VLVHTYG--VENRIEDAVDTFL-- 294
            R  EAL ++++M    C P +  Y            ++  +   +E+ +   +DT++  
Sbjct: 348 YRYKEALTLIRTMRRDGCSPNAVSYQCFFACLEKPKFIIELFDGMIESGVRPTMDTYVML 407

Query: 295 ------------------EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                              ME+ G   D + YNALI A  +        +  ++M +KG+
Sbjct: 408 LKKFARWGFLRLVFLVWNRMEELGCSPDASAYNALIDALVEKGLIDMARKYDEEMLAKGL 467

Query: 337 APNSR 341
           +P  R
Sbjct: 468 SPKPR 472



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 138/351 (39%), Gaps = 55/351 (15%)

Query: 179 SKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKD--------------------PNL 216
           + + ++A E F+ +  K +F   ++TY+++L+  GK                     PN 
Sbjct: 87  NNDYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLIHRMRQNPHSLPNH 146

Query: 217 PRAREIFREMVDTGCNPDIV---------------TYGIMVDVLCKAGRVDEA------- 254
              R +F+  V   C  D V               ++  ++D LC+   V EA       
Sbjct: 147 TTFRVMFKRYVSAHCVQDAVNTFQRLNEFNLKDETSFSNLIDALCEYKHVLEAQDLVFGD 206

Query: 255 ------LGIVKSMDSTVCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
                   IV  +D  V     + I+++++  +          + + EM++ G+  D+  
Sbjct: 207 KKNQTLTWIVDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWEFWDEMDRRGVEKDLHS 266

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+  +    K  K     ++ K+M  KG+  +    NI++  +      D + R+F  M 
Sbjct: 267 YSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVSQGVDFSIRMFCEMK 326

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            L       TY  +I++ C     ++A  + + M+     P+  ++      L     + 
Sbjct: 327 DLGLNPTVVTYNTIIRLLCDSYRYKEALTLIRTMRRDGCSPNAVSYQCFFACLEKPKFII 386

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +   L + MIE G+RP+ +T+  L K   + G   ++  +  +M  L   P
Sbjct: 387 E---LFDGMIESGVRPTMDTYVMLLKKFARWGFLRLVFLVWNRMEELGCSP 434


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 190/376 (50%), Gaps = 8/376 (2%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           M+ S  K  ++     +++ M  + +  +V T  +++    R   V+ A+   + M   G
Sbjct: 163 MVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRG 222

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAR 220
           +   +  +N +L  LCK +   KA+E+F  M      PD ++++IL+ G+ +   +  A 
Sbjct: 223 LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAV 282

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           + ++EM      PD+V++  ++ +  + G +D A   ++ M      P   IY++++  +
Sbjct: 283 KFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                + +A+    EM   G L DV  YN L+   CK ++  +  ++L +M  +GV P+ 
Sbjct: 343 CRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDL 402

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T   +++G   +G  + A ++F  +++     D  TY  +I   C+ G+L KA ++W  
Sbjct: 403 CTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDD 462

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF-----GKLRKLL 454
           M  +  +P+  T+S+LI+  C+KG V D+   L++M++KG  P+  T+     G  R   
Sbjct: 463 MHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 455 IKEGREDVLKFLQEKM 470
           +K+G++ + K  Q+ +
Sbjct: 523 VKKGQQFLQKMRQDNV 538



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 159/311 (51%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++  + R   + EA+   + M  +G   ++  +N LL+ LCK   +  A+++ + M+
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEME 394

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R + PD  T++ L+ G+ +  N   A ++F  ++     PD+VTY  ++D +C+ G + 
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLA 454

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M +    P    YS+L+ ++  + ++EDA     EM K G L ++  YN++I
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
             +C++   K   + L+ M    V P+  T N +++G I       A+ VF  M K +  
Sbjct: 515 KGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVR 574

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            DA TY M+I  F + G ++ A +V+K M      P  +T+  LING    G    +  L
Sbjct: 575 PDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQL 634

Query: 432 LEDMIEKGIRP 442
            ++MI +G  P
Sbjct: 635 HDEMIHRGFAP 645



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  T  I++  Y +  + + A    + M+K  V  ++   N L+ A  ++ +V  A  +
Sbjct: 155 VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            D M +R + P   TY+ +L+G  K     +A+E+FR M      PD+ ++ I++   C+
Sbjct: 215 VDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G V EA+   K M      P    +S L+  +     ++ A     EM+  G++ D  +
Sbjct: 275 VGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVI 334

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM- 366
           Y  +IG FC+A       RV  +M   G  P+  T N +LNGL  +    +A ++   M 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEME 394

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            +    D  T+T +I  +C+ G  E A +++  +  +R  P + T++ LI+G+C KG ++
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLA 454

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +  L +DM  + I P+  T+  L     ++G+ ED   FL E
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDE 497



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 192/393 (48%), Gaps = 6/393 (1%)

Query: 61  VSPEIV-EDVL--EKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           V P++V  +VL   +FR     A      +   +  +  +  Y+S+++ L K R++    
Sbjct: 188 VFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAK 247

Query: 118 DLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           ++   M +     +V +F I++  + RV +V+EAV  +  MQ   VT ++ +F+ L+   
Sbjct: 248 EVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLF 307

Query: 177 CKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            +   +  A      MK    +PD   Y++++ G+ +  ++  A  +  EMV  GC PD+
Sbjct: 308 SRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDV 367

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           VTY  +++ LCK  R+ +A  ++  M+     P    ++ L+H Y  +   E+A+  F  
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDT 427

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           + +  +  DV  YN+LI   C+         +  DM+++ + PN  T +I+++    +G+
Sbjct: 428 LLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQ 487

Query: 356 TDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            ++A+     M+K     +  TY  +IK +C+ G ++K  +  + M+     P + TF+ 
Sbjct: 488 VEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNT 547

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           LI+G   +  +  +  +   M ++ +RP   T+
Sbjct: 548 LIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTY 580



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 178/359 (49%), Gaps = 7/359 (1%)

Query: 119 LVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           LV++M  + +   + T+  +++   + ++ ++A   F  M +  V  ++ +FN L+   C
Sbjct: 214 LVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFC 273

Query: 178 KSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           +   V++A + +  M+ R++ PD  ++S L+  + +   +  A    REM   G  PD V
Sbjct: 274 RVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGV 333

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
            Y +++   C+AG + EAL +   M    C P    Y+ L++    ++R+ DA     EM
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEM 393

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           E+ G+  D+  +  LI  +C+   F+N  ++   +  + + P+  T N +++G+  +G+ 
Sbjct: 394 EERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDL 453

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +A  ++  M  +    +  TY+++I   C+ G++E AF     M  K  +P++ T++ +
Sbjct: 454 AKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSI 513

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE----GREDVLKFLQEKM 470
           I G C  G V      L+ M +  + P   TF  L    IKE    G  +V   ++++M
Sbjct: 514 IKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 157/352 (44%), Gaps = 40/352 (11%)

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
           + F +++R Y + +K  EA   F ++  + V    +A N LL+ L ++     AQE +  
Sbjct: 88  QVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRL 147

Query: 192 M--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           +   D  + ++ T +I++  + K      A  +  EM      PD+VT+ +++D   +AG
Sbjct: 148 VLSSDSEV-NAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAG 206

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            VD A+ +V SM                      NR              G+   +  YN
Sbjct: 207 DVDAAIALVDSM---------------------ANR--------------GLKPGIVTYN 231

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IK 368
           +++   CK  +F     V + M+   VAP+ R+ NI++ G    GE  EA + ++ M  +
Sbjct: 232 SVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHR 291

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               D  +++ +I +F + GE++ A    + MK    +P    ++++I G C  G +S++
Sbjct: 292 YVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPLC 479
             + ++M+  G  P   T+  L   L K+ R  D  K L E     V   LC
Sbjct: 352 LRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLC 403



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 124/282 (43%), Gaps = 37/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++++  L K  +      L+N M  + +  ++ TF  ++  Y R    E A+  F+
Sbjct: 367 VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFD 426

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE------ 208
            + +  +  ++  +N L+  +C+  ++ KA E++D M  R  +P+  TYSIL++      
Sbjct: 427 TLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKG 486

Query: 209 -----------------------------GWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                                        G+ +  N+ + ++  ++M      PD++T+ 
Sbjct: 487 QVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFN 546

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++    K   +  A  +   M+  + RP +  Y+++++ +  +  ++DA   F  M  +
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDS 606

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           GI  D   Y +LI     A   K  +++  +M  +G AP+ +
Sbjct: 607 GIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPDDK 648



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 100/241 (41%), Gaps = 36/241 (14%)

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM----------EKNGILA--- 303
           IV S+ ++   P   ++ +L+ TY    +  +A + F  +            N +LA   
Sbjct: 74  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLS 133

Query: 304 --------------------DVAMY--NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                               +V  Y  N ++ ++CK  +F     V+ +M  + V P+  
Sbjct: 134 RAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVV 193

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N++++     G+ D A  +   M  +  +    TY  ++K  C+    +KA +V++ M
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTM 253

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P + +F++LI G C  G V ++    ++M  + + P   +F  L  L  + G  
Sbjct: 254 DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEM 313

Query: 461 D 461
           D
Sbjct: 314 D 314


>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
 gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
          Length = 519

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 211/452 (46%), Gaps = 11/452 (2%)

Query: 27  PSTEALDAAKSISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNA---GTLAFC 82
           P+++A   A  + +I+ S+     +++AL  S + +S  +++ V+ +FR A      A  
Sbjct: 36  PASDADADAGEVYRIVTSAATPSAMESALAASAVPLSSPLLDAVMRRFRFAHGDPLRALS 95

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRK 140
               A  +     S  A  + +  L + R++  MWDL+   R      +   T  I++ +
Sbjct: 96  LLSLAADRGGVAPSPYAIDTALYVLGRARRFPHMWDLLATTRRICPDAVTSRTAMIVLGR 155

Query: 141 YARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199
            A+V  V E V +F  + + +        FN LL  LC+ K++  A+ +F  +K  F  +
Sbjct: 156 VAKVCSVHETVASFRRLARMFHAVDPACLFNALLRTLCQEKSMSDARNVFHALKYDFRVN 215

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T++ILL GW    +   A     EM + G  PD+VTY  ++D  CK   V++A  ++ 
Sbjct: 216 RHTFNILLSGWKSAED---AEAFVAEMRELGVEPDLVTYNSLIDCHCKNRDVEKAYKLLD 272

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      P    Y+ L+   G+  + + A D   EM + G   DV  YNA I  F  A 
Sbjct: 273 EMREKDISPDIITYTSLIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAIRNFVIAK 332

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
           +  + + ++  M SKG+ PN  T N+         +    +R++ RM  + C  +  +  
Sbjct: 333 RLGDAFALMDQMASKGLMPNPTTYNLFFRCYYWAFDIGSTWRLYERMRSEGCFPNTQSCM 392

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I++  + G++ +A ++W  M   RF        VL + LCD+G + +       M+E 
Sbjct: 393 FIIRLCHRYGKVGQALELWSDMVSNRFGSFTLVSDVLFDLLCDEGKLEEVERCFCQMVEF 452

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G +PS   F +++ L+    +E+ +  L EKM
Sbjct: 453 GQKPSNVAFRRIKILMQVAKQEESIARLTEKM 484


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 173/349 (49%), Gaps = 3/349 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I+ L K +     +DL + M  + +  +V T+  ++  +    ++ EA    N
Sbjct: 150 VVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLN 209

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M    +  N+  +N L+  LCK   V++++ +   M  + + PD   YSIL++G+    
Sbjct: 210 EMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVG 269

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A++IF  MV TG NPD+ +Y I+++ LCK  RVDEA+ +++ M      P +  YS
Sbjct: 270 EVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYS 329

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+       RI   +D   EM   G  A++  YN+L+   CK         +   M  +
Sbjct: 330 SLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKER 389

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGELEKA 393
           G+ PN  T   +++GL   G   +   +F+  ++K    D  TYT+MI   C+ G  ++A
Sbjct: 390 GIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEA 449

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             +   M+    IP+  TF ++I  L +K     +  LL +MI KG+ P
Sbjct: 450 LAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 179/374 (47%), Gaps = 38/374 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++ I++    ++ +   A+     ++      ++  ++ ++  LCK K V +A +++  M
Sbjct: 117 SYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEM 176

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R I PD  TY+ L+ G+     L  A  +  EM+    NP+I TY  ++D LCK G+V
Sbjct: 177 NARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKV 236

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            E+  ++  M     +P   IYS+L+  Y +   ++ A   FL M + G+  DV  YN +
Sbjct: 237 KESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNII 296

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL--IGRGET------------- 356
           I   CK  +      +L++M  K + P++ T + +++GL  +GR  T             
Sbjct: 297 INGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQ 356

Query: 357 --------------------DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
                               D+A  +F +M  +  + +  TYT +I   C+GG L+K   
Sbjct: 357 PANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQA 416

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG-KLRKLL 454
           +++++ +K +   + T++V+I+GLC +G+  ++  +   M + G  P+  TF   +R LL
Sbjct: 417 LFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLL 476

Query: 455 IKEGREDVLKFLQE 468
            K+  +   K L E
Sbjct: 477 EKDENDKAEKLLHE 490



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 162/325 (49%), Gaps = 2/325 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           +M+      +V+++++  + +   G   +  ++  LL+ LCK    R A ++   ++DR 
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRS 145

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             PD   YS +++G  KD  +  A +++ EM   G  PD++TY  ++   C AG++ EA 
Sbjct: 146 TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAF 205

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           G++  M      P  + Y+ L+ T   E +++++ +    M K G+  DV +Y+ L+  +
Sbjct: 206 GLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGY 265

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           C   + +   ++   M   GV P+  + NII+NGL      DEA  + R M+ K    D 
Sbjct: 266 CLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDT 325

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY+ +I   C+ G +     + K M  +    ++ T++ L++GLC    +  +  L   
Sbjct: 326 VTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMK 385

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR 459
           M E+GI+P+  T+  L   L K GR
Sbjct: 386 MKERGIQPNKYTYTALIDGLCKGGR 410



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 167/365 (45%), Gaps = 3/365 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +  ++ SL K++ Y  +  L   M  K ++ ++ T  I++  +  + ++  +      + 
Sbjct: 13  FGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKIL 72

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           K G   N    N L+  LC    V+K+    D  +   F  D  +Y ILL G  K     
Sbjct: 73  KLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETR 132

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++ R + D    PD+V Y  ++D LCK   VDEA  +   M++    P    Y+ L+
Sbjct: 133 CAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLI 192

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             + +  ++ +A     EM    I  ++  YN LI   CK  K K    +L  M  KGV 
Sbjct: 193 CGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVK 252

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P+    +I+++G    GE  +A ++F  M++     D  +Y ++I   C+G  +++A  +
Sbjct: 253 PDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNL 312

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + M  K  IP   T+S LI+GLC  G ++    L ++M  +G   +  T+  L   L K
Sbjct: 313 LREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCK 372

Query: 457 EGRED 461
               D
Sbjct: 373 NQNLD 377



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 121/249 (48%), Gaps = 1/249 (0%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R IP    +  +L    K  + P    + ++M   G  PD+VT  I+++  C  G++  +
Sbjct: 5   RHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFS 64

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++  +     +P + I + L+    ++  ++ ++    ++   G   D   Y  L+  
Sbjct: 65  FSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNG 124

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEAD 373
            CK  + +   ++L+ +  +   P+    + I++GL      DEAY ++  M  +    D
Sbjct: 125 LCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPD 184

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT +I  FC  G+L +AF +   M LK   P+++T++ LI+ LC +G V +S  LL 
Sbjct: 185 VITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLA 244

Query: 434 DMIEKGIRP 442
            M +KG++P
Sbjct: 245 VMTKKGVKP 253


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 182/366 (49%), Gaps = 6/366 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y +MI+ LAK   + +   L++ MR + + ++ +    ++R+Y R +   EA   F  M+
Sbjct: 148 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 207

Query: 159 KYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           +YG    + A    LL AL K +   +AQ +FD  K  F PD   Y+ L+  W +   L 
Sbjct: 208 EYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSGRLD 267

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +F EM   G  P++ TY  ++D + +AG+V  A  ++  M  + C P +  ++ ++
Sbjct: 268 EAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIM 327

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK--FKNVYRVLKDMNSKG 335
             +    R E  +    +M + G   D+  YN L+   C   +       ++L  M +KG
Sbjct: 328 RAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKG 387

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             P+  T N +L  ++  G  + A +++ RM +L C+ +  TY +++++F     ++   
Sbjct: 388 CIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVL 447

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKL 453
           ++ + M  +   P+++T++ LI   C +G    + + L +M+ EK ++P+   +  +  L
Sbjct: 448 RIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLAL 507

Query: 454 LIKEGR 459
           L K G+
Sbjct: 508 LRKAGQ 513



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 7/337 (2%)

Query: 147 VEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205
           + EAV  F+ V+         A +  ++  L K  +   A+ + D M++R +P S    +
Sbjct: 125 LPEAVAFFHHVLPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLIL 184

Query: 206 LLEGWGKDPNLP-RAREIFREMVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            L        +P  A ++FR M + G   PD  T   ++  L K     EA  +  S  S
Sbjct: 185 ALIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKS 244

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
            V  P   +Y+ LVH +    R+++A   F EM++ G+  +V  Y A+I A  +A +   
Sbjct: 245 -VFTPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPR 303

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
              +L  M   G  PN+ T N I+   +  G +++  +V  +M +L CE D  TY  +++
Sbjct: 304 AQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLME 363

Query: 383 MFCQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             C  G+  L+ A K+   M  K  IP  HTF+ ++  +   G V+ +  L E M E   
Sbjct: 364 THCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQC 423

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +P+  T+  L +L   E   D++  ++  M+    EP
Sbjct: 424 KPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEP 460


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 169/340 (49%), Gaps = 4/340 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL   G+R+       VL++  + G  A  FF W ++Q  ++H    Y +M+ +L + 
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           +Q+  +  L++ M R     N  T+  ++  Y R   + EA+  FN MQ+ G   +   +
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437

Query: 170 NGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+    K+  +  A +++  M+     PD+ TYS+++   GK  +LP A ++F EMVD
Sbjct: 438 CTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 497

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC P++VTY IM+D+  KA     AL + + M +    P    YS+++   G    +E+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM++   + D  +Y  L+  + KA   +  ++  + M   G+ PN  TCN +L+
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
             +   +  EAY + + M+ L       TYT+++     G
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   +   +  ++  L ++K      ++ D M +D   P++ TY+ L+  +G+   L  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +F +M + GC PD VTY  ++D+  KAG +D A+ + + M +    P +F YSV+++ 
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
            G    +  A   F EM   G   ++  YN ++    KA  ++N  ++ +DM + G  P 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP- 537

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
                                            D  TY++++++    G LE+A  V+  
Sbjct: 538 ---------------------------------DKVTYSIVMEVLGHCGYLEEAEAVFTE 564

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M+ K +IP    + +L++     G V  +    + M+  G+RP+  T   L    ++  +
Sbjct: 565 MQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNK 624

Query: 460 -EDVLKFLQEKMNLLVKEPL 478
             +  + LQ  + L ++  L
Sbjct: 625 IAEAYELLQNMLALGLRPSL 644


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 169/340 (49%), Gaps = 4/340 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL   G+R+       VL++  + G  A  FF W ++Q  ++H    Y +M+ +L + 
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           +Q+  +  L++ M R     N  T+  ++  Y R   + EA+  FN MQ+ G   +   +
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437

Query: 170 NGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+    K+  +  A +++  M+     PD+ TYS+++   GK  +LP A ++F EMVD
Sbjct: 438 CTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 497

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC P++VTY IM+D+  KA     AL + + M +    P    YS+++   G    +E+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM++   + D  +Y  L+  + KA   +  ++  + M   G+ PN  TCN +L+
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLS 617

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
             +   +  EAY + + M+ L       TYT+++     G
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 153/353 (43%), Gaps = 15/353 (4%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNV-MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           VE    ++R++      EEA+    + +  Y   Q L   N   +AL            F
Sbjct: 302 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNAL----------GFF 351

Query: 190 DCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             +K +  F  D  TY+ ++   G+        ++  EMV  GC P+ VTY  ++    +
Sbjct: 352 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGR 411

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           A  ++EA+ +   M    C+P    Y  L+  +     ++ A+D +  M+  G+  D   
Sbjct: 412 ANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+ +I    KA      +++  +M  +G  PN  T NI+++          A +++R M 
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQ 531

Query: 368 KLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
               E D  TY++++++    G LE+A  V+  M+ K +IP    + +L++     G V 
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVE 591

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPL 478
            +    + M+  G+ P+  T   L    ++  +  +  + LQ  + L ++  L
Sbjct: 592 KAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSL 644



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 124/258 (48%), Gaps = 10/258 (3%)

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGVENRI 286
           G   D  TY  MV  L   GR  +   I K +D  V   C+P +  Y+ L+H+YG  N +
Sbjct: 359 GFKHDGHTYTTMVGNL---GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            +A++ F +M++ G   D   Y  LI    KA        + + M + G++P++ T ++I
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVI 475

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +N L   G    A+++F  M+ + C  +  TY +M+ +  +    + A K+++ M+   F
Sbjct: 476 INCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGF 535

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLK 464
            P   T+S+++  L   G + ++  +  +M +K   P    +G L  L  K G  E   +
Sbjct: 536 EPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQ 595

Query: 465 FLQEKMN--LLVKEPLCD 480
           + Q  ++  LL   P C+
Sbjct: 596 WYQAMLHAGLLPNVPTCN 613


>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
          Length = 525

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 212/447 (47%), Gaps = 14/447 (3%)

Query: 35  AKSISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNAG---TLAFCFFKWAEKQ 90
           A ++ +++ ++P    +++AL  SG+ +S  +++ VL +FR A      A      A  +
Sbjct: 38  ADAVYRMVTAAPTPSAMESALSASGVAISAPLLDLVLRRFRFAHGDPLRALSLLSLALDR 97

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVE 148
                S  A  + +  L + R++  MWDL+ + R      +   T  +++ + A+V  V 
Sbjct: 98  HGVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVR 157

Query: 149 EAVYTFN----VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204
           E V +F     +++  G  Q    FN LL  LC+ K++  A+ ++  +K  F  + +T++
Sbjct: 158 ETVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFN 217

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILL GW    +   A     EM + G  PD+VTY  ++D  CK   V+ A  ++  M   
Sbjct: 218 ILLSGWKSAED---AEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREK 274

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ L+   G+  + + A     EM + G   DV  YN  I  F  A +  + 
Sbjct: 275 DISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDA 334

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           + ++++M SKG+ PN+ T N+         +   A++++ RM  + C  +  +   ++++
Sbjct: 335 FALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRL 394

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             + G + +A ++W  M    F        VL + LCD+G + ++      MIE G +PS
Sbjct: 395 CHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPS 454

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
              F +++ L+    RE+ +  L  +M
Sbjct: 455 NVAFRRIKILMQLANREESIARLTAQM 481



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 103/252 (40%), Gaps = 37/252 (14%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           ++   E  +  Y+S+I+   K R  +  + L++ MR K +  +V T+  ++     + + 
Sbjct: 237 RELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIGQP 296

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           ++A +    M + G   ++ A+N  +     +K +  A  + + M  +  +P++ TY++ 
Sbjct: 297 DKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMASKGLMPNATTYNLF 356

Query: 207 LEG--WGKD-----------------PN----------------LPRAREIFREMVDTGC 231
                W  D                 PN                + +A E++ +MV+ G 
Sbjct: 357 FRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGF 416

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
               +   ++ D+LC  G++DEA      M     +P++  +  +     + NR E    
Sbjct: 417 GSFTLVSDVLFDLLCDEGKLDEAERCFHQMIELGQKPSNVAFRRIKILMQLANREESIAR 476

Query: 292 TFLEMEKNGILA 303
              +M + G LA
Sbjct: 477 LTAQMAQFGRLA 488


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 198/411 (48%), Gaps = 38/411 (9%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
            +  + S++ Y +++ +L + R    + DL+  M T  +  N+ T+ I +R   R  +++
Sbjct: 220 SEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRID 279

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILL 207
           +A      M+  G   ++  +  L+ ALC +  + KA+E++  M+     PD  TY  L+
Sbjct: 280 DAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLM 339

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG------------------ 249
             +G   +L   +  + EM   G  PD+VTY I+V+ LCK+G                  
Sbjct: 340 SKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIV 399

Query: 250 -----------------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
                            R+DEAL +  +M+S    PT++ Y + +  YG     E A+DT
Sbjct: 400 PNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDT 459

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F +M+K GI+  +A  NA + +  +  + +    +  D+++ G++P+S T N+++     
Sbjct: 460 FEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSK 519

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+ D+A ++   M+ + CE D      +I    + G +++A++++  +K  +  P++ T
Sbjct: 520 AGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVT 579

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           +++LI GL  +G +  +  L   M E G  P+  TF  L   L K    D+
Sbjct: 580 YNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDL 630



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 192/433 (44%), Gaps = 43/433 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCI 136
           A  +FK   +  N  H+    + M+E L    ++     ++DL+      R  N  T+  
Sbjct: 105 ALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINR--NPNTYLT 162

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDR 195
           I +  +    + +A +    M++ G   N  ++NGL+  L +    ++A +++  M  + 
Sbjct: 163 IFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEG 222

Query: 196 FIPDSKTYSILL-------------------EGWGKDPNL----------------PRAR 220
             P  KTYS L+                   E  G  PN+                  A 
Sbjct: 223 LKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAY 282

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            I + M D GC PD+VTY +++D LC AG++D+A  +   M ++  +P    Y  L+  +
Sbjct: 283 GILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKF 342

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
           G    +E     + EME +G   DV  Y  L+ A CK+ K    + +L  M  +G+ PN 
Sbjct: 343 GNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNL 402

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N +++GL+     DEA  +F  M  L  A  A +Y + I  + + G+ EKA   ++ 
Sbjct: 403 HTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEK 462

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           MK +  +PS+   +  +  L + G + ++  +  D+   G+ P   T+  + K   K G+
Sbjct: 463 MKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQ 522

Query: 460 ED-VLKFLQEKMN 471
            D   K L E ++
Sbjct: 523 IDKATKLLTEMLS 535



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 14/348 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+++I  L  +R+     +L N M +  +     ++ + +  Y ++   E+A+ TF
Sbjct: 401 NLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTF 460

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
             M+K G+  ++AA N  L +L +   +R+A++IF+ + +    PDS TY+++++ + K 
Sbjct: 461 EKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKA 520

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + +A ++  EM+  GC PDI+    ++D L KAGRVDEA  +   +      PT   Y
Sbjct: 521 GQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTY 580

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L+   G E ++  A+D F  M+++G   +   +NAL+   CK +      ++   M  
Sbjct: 581 NILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTI 640

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
              +P+  T N I+ GLI  G    A+  + +M K    D  T   ++    + G +E A
Sbjct: 641 MNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDA 700

Query: 394 FK-VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            K V +++       S   +  L+            C+L+E  IE+ I
Sbjct: 701 IKIVMEFVHQSGLQTSNQVWGELM-----------ECILIEAEIEEAI 737



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 145/290 (50%), Gaps = 2/290 (0%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            N+ T+ +++  + + ++++E    +N M   G   N+   N ++SAL KS ++ KA +++
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 190  -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             + +   F P   TY  L+ G  K      A +IF EM D  C P+   Y I+++   KA
Sbjct: 882  YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA 941

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G V+ A  + K M     RP    Y++LV    +  R++DAV  F E++  G+  D   Y
Sbjct: 942  GNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSY 1001

Query: 309  NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            N +I    K+ + +    +  +M ++G++P   T N ++      G  D+A ++F  +  
Sbjct: 1002 NLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQF 1061

Query: 369  L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            +  E +  TY  +I+   + G  ++AF V+K M +    P+  TF+ L N
Sbjct: 1062 MGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPN 1111



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 149/288 (51%), Gaps = 3/288 (1%)

Query: 96   SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
            ++  Y+ ++++  K ++   +++L N M  +    N+ T  II+    +   + +A+  +
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 155  NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
              +     +     +  L+  L K+    +A +IF+ M D +  P+   Y+IL+ G+GK 
Sbjct: 882  YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA 941

Query: 214  PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             N+  A ++F+ M+  G  PD+ +Y I+V+ L   GRVD+A+   + +  T   P +  Y
Sbjct: 942  GNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSY 1001

Query: 274  SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            +++++  G   R+E+A+  F EM+  GI  ++  YNALI  F  A       ++ +++  
Sbjct: 1002 NLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQF 1061

Query: 334  KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
             G+ PN  T N ++ G    G  D A+ VF++M+ + C  +A T+  +
Sbjct: 1062 MGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 156/329 (47%), Gaps = 5/329 (1%)

Query: 137  IMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            ++R   + +K  +A   F+   K  G      ++N L+  L        A ++F  MK+ 
Sbjct: 758  LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNA 817

Query: 196  -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
               P+  TY++LL+  GK   +    E++ EM+  GC P+I+T+ I++  L K+  +++A
Sbjct: 818  GCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKA 877

Query: 255  LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
            L +   + S    PT   Y  L+       R E+A+  F EM       + A+YN LI  
Sbjct: 878  LDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILING 937

Query: 315  FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
            F KA        + K M  +G+ P+ ++  I++  L   G  D+A   F  + KL   D 
Sbjct: 938  FGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEEL-KLTGLDP 996

Query: 375  DT--YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
            DT  Y +MI    +   LE+A  ++  MK +   P ++T++ LI    + G+V  +  + 
Sbjct: 997  DTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMF 1056

Query: 433  EDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            E++   G+ P+  T+  L +   K G +D
Sbjct: 1057 EELQFMGLEPNVFTYNALIRGHSKSGNKD 1085



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 116/538 (21%), Positives = 223/538 (41%), Gaps = 97/538 (18%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEI 65
           H+ N +ISG ++ LRR +      EAL+   ++  + ++         +D  G    PE 
Sbjct: 403 HTYNTLISGLLN-LRRLD------EALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEK 455

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
             D  EK +  G +                S+ A ++ + SLA++ + +   D+ N +  
Sbjct: 456 ALDTFEKMKKRGIMP---------------SIAACNASLYSLAEMGRIREAKDIFNDIHN 500

Query: 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             +  +  T+ ++M+ Y++  ++++A      M   G   ++   N L+  L K+  V +
Sbjct: 501 CGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDE 560

Query: 185 AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG------------- 230
           A ++F  +KD +  P   TY+IL+ G GK+  L +A ++F  M ++G             
Sbjct: 561 AWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLD 620

Query: 231 ----------------------CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
                                 C+PD++TY  ++  L K GR   A      M   +   
Sbjct: 621 CLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPD 680

Query: 269 TSFIYSVL-------------------VHTYG----------------VENRIEDAVDTF 293
              +Y++L                   VH  G                +E  IE+A+   
Sbjct: 681 HVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFA 740

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL-KDMNSKGVAPNSRTCNIILNGLIG 352
             +  N I  D  +   LI   CK  K  +  ++  K   S G  P   + N +++GL+G
Sbjct: 741 EGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLG 800

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
              T+ A ++F  M    C  +  TY +++    +   +++ F+++  M  +   P++ T
Sbjct: 801 CNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIIT 860

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +++I+ L     ++ +  L  ++I     P+  T+G L   L+K GR E+ +K  +E
Sbjct: 861 HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEE 918



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 155/367 (42%), Gaps = 42/367 (11%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFN 155
           + A  S+ +  + +  ++++  L N + T         C  M ++ RV  +VE+  + F+
Sbjct: 93  IGALKSISDPNSALSYFKMVSQLPNIVHTPET------CNYMLEFLRVHGRVEDMAFVFD 146

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +MQK  + +N   +  +  AL     +R+A                              
Sbjct: 147 LMQKQVINRNPNTYLTIFKALSIKGGIRQA------------------------------ 176

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
            P A     +M   G   +  +Y  ++  L + G   EAL + K M S   +P+   YS 
Sbjct: 177 -PFA---LGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSA 232

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+   G        +D   EME  G+  ++  Y   I    +A +  + Y +LK M  +G
Sbjct: 233 LMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEG 292

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
             P+  T  ++++ L   G+ D+A  ++ +M     + D  TY  ++  F   G+LE   
Sbjct: 293 CGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVK 352

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           + W  M+   + P + T+++L+  LC  G V  +  +L+ M  +GI P+  T+  L   L
Sbjct: 353 RFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGL 412

Query: 455 IKEGRED 461
           +   R D
Sbjct: 413 LNLRRLD 419


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 2/332 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPD 199
           Y R      A   F +M + G  +    +  LL  LC +  VR+A  +F  M  D   PD
Sbjct: 119 YCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPD 178

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           S  YSI++ G         A  +  + +  G  P++  Y  ++D  C  G ++ A+ I K
Sbjct: 179 SHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFK 238

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M S  C P    Y+ L+  +    ++E A+  +  M + G+  +V  Y  LI   C   
Sbjct: 239 GMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEG 298

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
             ++ +R+L  M + G+APN  TC ++++ L   G  +EA +    ++ K  + +   YT
Sbjct: 299 HLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYT 358

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            MI   C+ G+ + A  + + +  + F+P  H +S LI+GLC +  + ++  LL DMIE 
Sbjct: 359 SMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIES 418

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G++ +   F  L    ++E R D  K + ++M
Sbjct: 419 GVQANAVPFTILIDKHLREFRSDSPKMISDRM 450



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 164 QNLAAFNGLLSALCKSKNVRKAQ-EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
           +NL  +  L++A C + ++  A+  +   ++    PDS  Y+  + G+ +      A  +
Sbjct: 72  RNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRL 131

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M   GC     TY  ++  LC AG V EA+ +   M    C P S +YS++VH    
Sbjct: 132 FLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCG 191

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             R  +AV    +    G + +VA+YNALI  +C     +    + K M SKG  PN RT
Sbjct: 192 AGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRT 251

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMK 401
              ++ G    G+ + A  ++ RMI+   A +  TYT +I+  C  G LE AF++   M+
Sbjct: 252 YTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSME 311

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                P+  T  VLI+ LC  G + ++   L  +++KGI+ +   +  +   L K G+ D
Sbjct: 312 ACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFD 371

Query: 462 VLKFLQEKM 470
               L +K+
Sbjct: 372 GAHNLMQKI 380



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 168/363 (46%), Gaps = 37/363 (10%)

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
             + I++       +  EAV         G   N+A +N L+   C + ++  A +IF  
Sbjct: 180 HVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKG 239

Query: 192 MKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
           M+ +  +P+ +TY+ L+ G+ K   + RA  ++  M++ G  P++VTY  ++   C  G 
Sbjct: 240 MQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGH 299

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           ++ A  ++ SM++    P  +   VL+       RIE+A      + + GI  +  +Y +
Sbjct: 300 LEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTS 359

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           +I A CK+ KF   + +++ + ++G  P++   + +++GL    +  EA  +   MI+  
Sbjct: 360 MIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESG 419

Query: 370 -----------------------------------CEADADTYTMMIKMFCQGGELEKAF 394
                                               + D  TYT+ I+ +CQ G +E A 
Sbjct: 420 VQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAE 479

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +   M      P++ T++ LI G  + G+VS +   L++MI+ G +P+ E++  L  LL
Sbjct: 480 SMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLL 539

Query: 455 IKE 457
           +K+
Sbjct: 540 LKK 542



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/382 (20%), Positives = 164/382 (42%), Gaps = 19/382 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM-RKYARVQKVEEAVYTF 154
           +V  Y ++I+        +  + L+++M    +   E  C+++     +  ++EEA    
Sbjct: 283 NVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFL 342

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKD 213
             + + G+  N   +  ++ ALCKS     A  +    + + F+PD+  YS L++G  ++
Sbjct: 343 GSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRE 402

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +  +M+++G   + V + I++D   +  R D    I   M +   +P    Y
Sbjct: 403 NKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTY 462

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +V + +Y  + R+EDA    ++M  +G+  ++  YN LI  +         +  LK+M  
Sbjct: 463 TVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMID 522

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAY----------------RVFRRMIKL-CEADADT 376
            G  PN  +  ++L  L+ +    +                   +   +IKL C + +  
Sbjct: 523 NGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYV 582

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y   I+   +   LE+A      M+     PS   ++ +I       ++ ++   L+ M+
Sbjct: 583 YDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMV 642

Query: 437 EKGIRPSGETFGKLRKLLIKEG 458
           ++   P  E++  +   L +EG
Sbjct: 643 KRNYLPRLESYRFIICALCEEG 664



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 151/370 (40%), Gaps = 19/370 (5%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI++L K  ++    +L+  + T+  + +   +  ++    R  K+ EA+   N M 
Sbjct: 357 YTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMI 416

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           + GV  N   F  L+    +       + I D M    + PD  TY++ +  + +D  + 
Sbjct: 417 ESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRME 476

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  +M+D G  P++ TY  ++      G V +A   +K+M    C+P    Y+VL+
Sbjct: 477 DAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536

Query: 278 HTYGVENRIEDAVDTFLEMEK-------NGILADVA---------MYNALIGAFCKANKF 321
                +N   D V   + + K         +L +V          +Y+  I    K ++ 
Sbjct: 537 GLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRL 596

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMM 380
           +     L  M S  + P+      ++          EA R    M+K       ++Y  +
Sbjct: 597 EEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFI 656

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+ G    A  ++  +  K +      + +LI+GL  KG  +D   LL  M E+  
Sbjct: 657 ICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNC 716

Query: 441 RPSGETFGKL 450
           RP    + +L
Sbjct: 717 RPGSAIYSRL 726



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 94/197 (47%), Gaps = 9/197 (4%)

Query: 99  AYHSMIE---SLAKIRQYQIMWDLVNAMRTKRMLNVETF---CIIMRKYARVQKVEEAVY 152
           +YH ++    SL KI   +++ +L+  +  K   +  ++   C I R  ++V ++EEA  
Sbjct: 544 SYHDLVADSISLWKIVDMKVLEELLEEV-IKLQCSSASYVYDCFI-RCLSKVDRLEEAKS 601

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
               MQ   +T +   +  ++    + K +++A    D M  R ++P  ++Y  ++    
Sbjct: 602 FLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALC 661

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           ++ +   A+ IF +++    N D + + I++D L + G   +   ++  M+   CRP S 
Sbjct: 662 EEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSA 721

Query: 272 IYSVLVHTYGVENRIED 288
           IYS L     V +  ++
Sbjct: 722 IYSRLTGEITVTSEAQE 738


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 181/370 (48%), Gaps = 4/370 (1%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYA 142
           F+ A ++    +SV  Y S+I+ L K  +    + L   M       N   +  ++R + 
Sbjct: 443 FESASERGCNPNSV-TYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFF 501

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSK 201
              + E+    +  M + G   +L   N  +  + K+  V K + IF+ MK   F+PD +
Sbjct: 502 MHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVR 561

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           +YSIL+ G  K         IF+ M   G   D   Y  +VD LCK+G+VD+A  +++ M
Sbjct: 562 SYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEM 621

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                 PT   Y  +V      +R+++A   F E +  GI  +V +Y++LI  F K  + 
Sbjct: 622 KVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRI 681

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
              Y +L++M  KG+ PN  T N +++ L+   E DEA   F+ M ++ C  +  TY+++
Sbjct: 682 DEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSIL 741

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+  +  KAF  W+ M+ +  IP++ T++ +I+GL   G ++D+  L E     G 
Sbjct: 742 INGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGG 801

Query: 441 RPSGETFGKL 450
            P   +F  L
Sbjct: 802 IPDSASFNAL 811



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 191/375 (50%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       ++   + L+  +R +  + +V +F  I+    + +KV+EA+  F+VM
Sbjct: 318 AYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM 377

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
           +K     N++ +N ++  LC +  V +A +I D M+     P+  + +I+++   K   L
Sbjct: 378 KK-DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQL 436

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF    + GCNP+ VTY  ++D L K G++D+A  + + M          IY+ L
Sbjct: 437 EEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSL 496

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  + +  R ED    + EM + G   D+ + N  +    KA + +    + +DM S G 
Sbjct: 497 IRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGF 556

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFK 395
            P+ R+ +I+++GL   G+  E   +F+ M +   A DA  Y  ++   C+ G+++KA++
Sbjct: 557 LPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYE 616

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V + MK+K   P++ T+  +++GL     + ++ +L E+   KGI  +   +  L     
Sbjct: 617 VLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFG 676

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E+M
Sbjct: 677 KVGRIDEAYLILEEM 691



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 204/424 (48%), Gaps = 39/424 (9%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEA 150
            YE SV  + +++ +LA+  Q +    LV+ ++   +  ++  + + +  + +   V+ A
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMA 265

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEG 209
              F+ ++ +G+  +  ++  ++  LCK+  + +A+E+F  M+ +R +P +  Y+ ++ G
Sbjct: 266 WKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMG 325

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           +G       A ++   + + GC P +V++  ++  L K  +VDEAL +   M     +P 
Sbjct: 326 YGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPN 384

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y++++    +  R+ +A     EME  G+  ++   N ++   CKAN+ +  +R+ +
Sbjct: 385 ISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFE 444

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMF---- 384
             + +G  PNS T   +++GL  +G+ D+AYR+F +M+    +A+   YT +I+ F    
Sbjct: 445 SASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHG 504

Query: 385 -----------------------------C--QGGELEKAFKVWKYMKLKRFIPSMHTFS 413
                                        C  + GE+EK   +++ MK   F+P + ++S
Sbjct: 505 RKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYS 564

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           +LI+GL   G   ++  + + M ++G       +  +   L K G+ D    + E+M + 
Sbjct: 565 ILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVK 624

Query: 474 VKEP 477
              P
Sbjct: 625 HVHP 628



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 184/435 (42%), Gaps = 72/435 (16%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           SV +++S++  L K R+      L + M+     N+ T+ II+       +V EA    +
Sbjct: 350 SVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRD 409

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M+  G+  NL + N ++  LCK+  + +A  IF+   +R   P+S TY  L++G GK  
Sbjct: 410 EMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKG 469

Query: 215 NLPRAREIFREMVDTGCN-----------------------------------PDIVTYG 239
            +  A  +F +M+D G +                                   PD+    
Sbjct: 470 KIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLN 529

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +D + KAG V++   I + M S    P    YS+L+H      +  +  + F  M + 
Sbjct: 530 TYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQ 589

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D   YNA++   CK+ K    Y VL++M  K V P   T   I++GL      DEA
Sbjct: 590 GFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEA 649

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV---------------------- 396
           Y +F     K  E +   Y+ +I  F + G +++A+ +                      
Sbjct: 650 YMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 709

Query: 397 -------------WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                        ++ MK  +  P+ +T+S+LINGLC     + + V  ++M ++G+ P+
Sbjct: 710 LVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPN 769

Query: 444 GETFGKLRKLLIKEG 458
             T+  +   L K G
Sbjct: 770 VVTYTTMISGLAKVG 784



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 203/455 (44%), Gaps = 10/455 (2%)

Query: 23  NSSEPSTEALDAAKSISKIMLSSPKVVLDTA-LDQSGIRVSPEIVEDV----LEKFRNAG 77
           ++S P   +   +  + +++ ++P    D A    S +  +P    DV    L   +N  
Sbjct: 30  SNSPPPVTSNTLSVELLRLLFAAPAWTPDLAGAVSSTLSSAPAPAHDVVVYVLRSLKNP- 88

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCI 136
           +LA  FF  A    +      AY++++  L+       +  ++  M      L       
Sbjct: 89  SLAAPFFLLASASSSQPLPPDAYNAVLPFLS--HDLAALEKVLEEMSHLGYGLPNPACAA 146

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-R 195
           ++    R +++E+A      M+        +A+  L+ AL +++   +A E+   M+D  
Sbjct: 147 LVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVG 206

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           +      ++ L+    ++  +  A  +  E+  +   PDIV Y + +D   KAG VD A 
Sbjct: 207 YEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAW 266

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
                + +   RP    Y+ +V       R+ +A + F +ME    +     YN +I  +
Sbjct: 267 KFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGY 326

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
             A +F + Y++L+ +  +G  P+  + N IL  L  + + DEA  +F  M K  + +  
Sbjct: 327 GSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNIS 386

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY ++I M C  G + +A+K+   M+L    P++ + +++++ LC    + ++  + E  
Sbjct: 387 TYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESA 446

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            E+G  P+  T+  L   L K+G+ D    L EKM
Sbjct: 447 SERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 14/326 (4%)

Query: 82  CFFKWAE-----------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-L 129
           C FK  E           K   +   VR+Y  +I  L K  Q +   ++  AM  +   L
Sbjct: 534 CVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFAL 593

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   +  ++    +  KV++A      M+   V   +A +  ++  L K   + +A  +F
Sbjct: 594 DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLF 653

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K + I  +   YS L++G+GK   +  A  I  EM+  G  P++ T+  ++D L K 
Sbjct: 654 EEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKT 713

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +DEAL   +SM    C P ++ YS+L++      +   A   + EM+K G++ +V  Y
Sbjct: 714 EEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTY 773

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
             +I    K     + Y + +   + G  P+S + N ++ G+       EAY+VF    +
Sbjct: 774 TTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRL 833

Query: 368 KLCEADADTYTMMIKMFCQGGELEKA 393
           + C  +  T   ++    +   LE+A
Sbjct: 834 RGCRLNVKTCISLLDALNKTECLEQA 859


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 169/340 (49%), Gaps = 4/340 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL   G+R+       VL++  + G  A  FF W ++Q  ++H    Y +M+ +L + 
Sbjct: 436 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 494

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           +Q+  +  L++ M R     N  T+  ++  Y R   + EA+  FN MQ+ G   +   +
Sbjct: 495 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 554

Query: 170 NGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+    K+  +  A +++  M+     PD+ TYS+++   GK  +LP A ++F EMVD
Sbjct: 555 CTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 614

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC P++VTY IM+D+  KA     AL + + M +    P    YS+++   G    +E+
Sbjct: 615 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 674

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM++   + D  +Y  L+  + KA   +  ++  + M   G+ PN  TCN +L+
Sbjct: 675 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 734

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
             +   +  EAY + + M+ L       TYT+++     G
Sbjct: 735 TFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 774



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   +   +  ++  L ++K      ++ D M +D   P++ TY+ L+  +G+   L  A
Sbjct: 476 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 535

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +F +M + GC PD VTY  ++D+  KAG +D A+ + + M +    P +F YSV+++ 
Sbjct: 536 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 595

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
            G    +  A   F EM   G   ++  YN ++    KA  ++N  ++ +DM + G  P 
Sbjct: 596 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP- 654

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
                                            D  TY++++++    G LE+A  V+  
Sbjct: 655 ---------------------------------DKVTYSIVMEVLGHCGYLEEAEAVFTE 681

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M+ K +IP    + +L++     G V  +    + M+  G+RP+  T   L    ++  +
Sbjct: 682 MQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNK 741

Query: 460 -EDVLKFLQEKMNLLVKEPL 478
             +  + LQ  + L ++  L
Sbjct: 742 IAEAYELLQNMLALGLRPSL 761


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 169/340 (49%), Gaps = 4/340 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL   G+R+       VL++  + G  A  FF W ++Q  ++H    Y +M+ +L + 
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 377

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           +Q+  +  L++ M R     N  T+  ++  Y R   + EA+  FN MQ+ G   +   +
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437

Query: 170 NGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+    K+  +  A +++  M+     PD+ TYS+++   GK  +LP A ++F EMVD
Sbjct: 438 CTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVD 497

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC P++VTY IM+D+  KA     AL + + M +    P    YS+++   G    +E+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM++   + D  +Y  L+  + KA   +  ++  + M   G+ PN  TCN +L+
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
             +   +  EAY + + M+ L       TYT+++     G
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   +   +  ++  L ++K      ++ D M +D   P++ TY+ L+  +G+   L  A
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +F +M + GC PD VTY  ++D+  KAG +D A+ + + M +    P +F YSV+++ 
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
            G    +  A   F EM   G   ++  YN ++    KA  ++N  ++ +DM + G  P 
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP- 537

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
                                            D  TY++++++    G LE+A  V+  
Sbjct: 538 ---------------------------------DKVTYSIVMEVLGHCGYLEEAEAVFTE 564

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M+ K +IP    + +L++     G V  +    + M+  G+RP+  T   L    ++  +
Sbjct: 565 MQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNK 624

Query: 460 -EDVLKFLQEKMNLLVKEPL 478
             +  + LQ  + L ++  L
Sbjct: 625 IAEAYELLQNMLALGLRPSL 644


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 184/377 (48%), Gaps = 5/377 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           S++AY S++ +LAK R+      L + M R     +   F  ++    +  KV++A   F
Sbjct: 114 SMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERF 173

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M K+G   N+  +N LL  LC S  + +A  +F  MK     PD  TY+ LL+   K 
Sbjct: 174 KQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKA 233

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +    ++F  M   G  P+++T+  ++  LC+ G +++AL +  SM    C+P  + Y
Sbjct: 234 RRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTY 293

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+       ++  A + F +M +  I  D   YN+LI  +CK        ++ ++M+ 
Sbjct: 294 TTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSG 353

Query: 334 -KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELE 391
             G+ P   T N +++G    G+   A  +   M  K   AD+ TY ++I    +  +L+
Sbjct: 354 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLD 413

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A +V+K M+ K+F+    +    + GLC  G +  +  + E   + G  P+ ETF  L 
Sbjct: 414 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILS 473

Query: 452 KLLIKEGR-EDVLKFLQ 467
           + LIK GR ED  K ++
Sbjct: 474 ESLIKLGRVEDAQKLME 490



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 162/323 (50%), Gaps = 2/323 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPN 215
           M+   +  N+  ++ ++ +L K     ++ ++ +  M     PD   ++ +++G+ +  N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           + +ARE+++ MV++G  PD V+Y I++  L K G++DE+L I+  M      P+   YS 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           LV       R++ A   F EM + G   D  M+  LI   C+A K K+     K M   G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
             PN    N++L+GL   G+ ++A  +F  M    C  D  TY  ++   C+   +E+  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K+++ M+   ++P++ TFS LI+GLC  G +  +  +   M+E G +P+  T+  L   L
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 455 IKEGREDVLKFLQEKMNLLVKEP 477
            +  +    + L EKM      P
Sbjct: 301 CRAEKVIQARELFEKMTQACIPP 323



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 166/352 (47%), Gaps = 3/352 (0%)

Query: 123 MRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           MR K +  NV T+  I++   +  K EE+      M   G   ++ AFNG++    +S N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 182 VRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           + KA+E++  M +  + PD+ +Y IL+ G  K   L  + +I  EMV  G  P +  Y  
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +V  L KA RVD A  +   M      P   ++  L+       +++DA + F +M K+G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              +V +YN L+   C + + +    +  +M S   +P+  T N +L+ +      +E  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 361 RVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++F  M       +  T++ +I   C+ GELEKA +V+  M      P+ +T++ LI+GL
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           C    V  +  L E M +  I P    +  L     K G  D  + L  +M+
Sbjct: 301 CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 150/313 (47%), Gaps = 4/313 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQ 112
           + + G + +  +   +L    ++G L      +AE K  +    V  Y+++++++ K R+
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARR 235

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +    L  AMR    + NV TF  ++    R  ++E+A+  F  M + G   N   +  
Sbjct: 236 VEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTT 295

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVD-T 229
           L+S LC+++ V +A+E+F+ M    IP D+  Y+ L+ G+ K  ++  A +++REM    
Sbjct: 296 LISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA 355

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  P IVT+  ++D  CK G++  A  +V  M +      S  Y +L+       ++++A
Sbjct: 356 GLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEA 415

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++ + +M +   L D     + +G  CK       Y V +     G  PN  T  I+   
Sbjct: 416 LEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSES 475

Query: 350 LIGRGETDEAYRV 362
           LI  G  ++A ++
Sbjct: 476 LIKLGRVEDAQKL 488


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 176/369 (47%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           S   ++ ++ S+AK +QY  ++ L N M +  +  +V T  I++  +  + +   A    
Sbjct: 66  STVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVL 125

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             + K G+  + A F  L+  LC    +  A  +FD M  + F P+  TY  L+ G  K 
Sbjct: 126 AKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKV 185

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  + R M    C PD+V Y  ++D LCK  +V EA  +   M      P  F Y
Sbjct: 186 GNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTY 245

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H+       +       +M  + I+ DV +++ ++ A CK  K    + V+  M  
Sbjct: 246 TSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII 305

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEK 392
           +GV PN  T N +++G   + E DEA +VF  M+    A +  +Y  +I  +C+   ++K
Sbjct: 306 RGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDK 365

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M  K  IP+  T++ L++GLC  G + D+  L  +M+  G  P   T+  L  
Sbjct: 366 ATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLD 425

Query: 453 LLIKEGRED 461
            L K+   D
Sbjct: 426 YLCKKSHLD 434



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 178/399 (44%), Gaps = 48/399 (12%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    +V     A+     M++     ++  +  ++ +LCK + V +A  +F
Sbjct: 171 NVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLF 230

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  + I PD  TY+ L+              +  +M+++   PD+V +  +VD LCK 
Sbjct: 231 SKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKE 290

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ EA  +V  M      P    Y+ L+  + +++ +++AV  F  M  NG   +V  Y
Sbjct: 291 GKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISY 350

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  +CK  +      + ++M  K + PN+ T N +++GL   G   +A  +F  M+ 
Sbjct: 351 NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVA 410

Query: 369 ----------------LC--------------------EADADTYTMMIKMFCQGGELEK 392
                           LC                    + D   YT++I   C+ GELE 
Sbjct: 411 HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA 470

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++  +  K   P++ T++++INGLC +G++ ++  L  +M   G  P G T+  + +
Sbjct: 471 ARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQ 530

Query: 453 LLIKEGRE-DVLKFLQEKM----------NLLVKEPLCD 480
            L++       ++ LQE +            L+ E LCD
Sbjct: 531 GLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCD 569



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 167/335 (49%), Gaps = 3/335 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDR 195
           ++   A+ ++        N M  +G+  ++   N L+++ C       A  +    +K  
Sbjct: 73  LLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLG 132

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             PD+ T++ L+ G   +  +  A  +F +M+  G  P++VTYG +++ LCK G  + A+
Sbjct: 133 LQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 192

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++SM+   C+P   +Y+ ++ +   + ++ +A + F +M   GI  D+  Y +LI + 
Sbjct: 193 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSL 252

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADA 374
           C   ++K+V  +L  M +  + P+    + +++ L   G+  EA+ V   M I+  E + 
Sbjct: 253 CNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNV 312

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  ++   C   E+++A KV+  M    + P++ +++ LING C    +  +  L E+
Sbjct: 313 VTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEE 372

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           M +K + P+  T+  L   L   GR +D +    E
Sbjct: 373 MCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHE 407



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 150/292 (51%), Gaps = 3/292 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  + +++++L K  +     D+V+ M  + +  NV T+  +M  +    +++EAV  F+
Sbjct: 277 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 336

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M   G   N+ ++N L++  CK + + KA  +F+ M +   IP++ TY+ L+ G     
Sbjct: 337 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVG 396

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +F EMV  G  PD+ TY I++D LCK   +DEA+ ++K+++ +   P   IY+
Sbjct: 397 RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYT 456

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++        +E A D F  +   G+  +V  Y  +I   C+        ++  +M+  
Sbjct: 457 IVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGN 516

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           G +P+  T N I  GL+   E   A ++ + M+ +   AD  T T++++M C
Sbjct: 517 GCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 568



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 2/243 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
              Y  +V +Y+++I    KI++      L   M  K ++ N  T+  +M     V +++
Sbjct: 340 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQ 399

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+  F+ M  +G   +LA +  LL  LCK  ++ +A  +   ++   + PD + Y+I++
Sbjct: 400 DAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 459

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  +   L  AR+IF  +   G  P++ TY IM++ LC+ G +DEA  +   MD   C 
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 519

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ +            A+    EM   G  ADV+    L+   C     ++V ++
Sbjct: 520 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQI 579

Query: 328 LKD 330
           L +
Sbjct: 580 LSE 582



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 1/254 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P +  ++ LL    K    P    +  +M   G  PD+ T  I+++  C   R   A  +
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  +     +P +  ++ L+    VE +I DA+  F +M   G   +V  Y  LI   CK
Sbjct: 125 LAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 184

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
                   R+L+ M      P+      I++ L    +  EA+ +F +M+ +    D  T
Sbjct: 185 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 244

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           YT +I   C   E +    +   M   + +P +  FS +++ LC +G ++++  +++ MI
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 304

Query: 437 EKGIRPSGETFGKL 450
            +G+ P+  T+  L
Sbjct: 305 IRGVEPNVVTYNAL 318



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 1/245 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   F  M+     P  V +  ++  + K  +      +   MDS    P  +  ++
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++++   NR   A     ++ K G+  D A +  LI   C   K  +   +   M  +G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             PN  T   ++NGL   G T+ A R+ R M +  C+ D   YT +I   C+  ++ +AF
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  M  +   P + T++ LI+ LC+         LL  MI   I P    F  +   L
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL 287

Query: 455 IKEGR 459
            KEG+
Sbjct: 288 CKEGK 292


>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 523

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 172/345 (49%), Gaps = 8/345 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           A+H  I +  K  ++ + W  V  M  + +L      I+M +YA   ++E+A+ TF+VM+
Sbjct: 143 AWHLAIWAAGKAGRFDLAWAAVRRMLHRGVLTRRAMIIVMERYAAASELEKALKTFDVME 202

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGK-DPNL 216
           K+ V  + A F  LL ALCKSKN+  A+E+   M+ +F P  ++ ++I+L+GW     ++
Sbjct: 203 KFKVQADQAVFYSLLRALCKSKNIEDAEELL-LMRKKFFPLTAEGFNIILDGWCNIIIDV 261

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +++EM      PD  +Y +MV    K G + + L +   M      P   +Y+ L
Sbjct: 262 AEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKRGWTPGIGVYNSL 321

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V+    EN ++DA   F ++   G+  +V  YN++I   C++ K      ++ DM  KG+
Sbjct: 322 VYVLTRENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMGDMIMKGI 381

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P   T +  L     +   DE  ++ R+M +  C  ++DT+ M+I  F Q  E   A +
Sbjct: 382 VPTILTYHAFLK----QEGVDETLQLLRKMKENGCGPNSDTFLMLIDKFIQANESGNALR 437

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           VW  M      P+   +  +I GL   G +  +    ++M  KG 
Sbjct: 438 VWNEMIRYDISPAYSHYMAVIQGLVKHGCIPRALEYYDEMKAKGF 482



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 44/275 (16%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           +P    + + +    KAGR D A   V+ M    V    + I  +++  Y   + +E A+
Sbjct: 138 SPPAEAWHLAIWAAGKAGRFDLAWAAVRRMLHRGVLTRRAMI--IVMERYAAASELEKAL 195

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
            TF  MEK  + AD A++ +L+ A CK+   ++   +L  M  K     +   NIIL+G 
Sbjct: 196 KTFDVMEKFKVQADQAVFYSLLRALCKSKNIEDAEELLL-MRKKFFPLTAEGFNIILDGW 254

Query: 351 IGRG-ETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP- 407
                +  EA RV++ M   C   D  +YT+M+  F + G L    +V+  MK + + P 
Sbjct: 255 CNIIIDVAEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKRGWTPG 314

Query: 408 ----------------------------------SMHTFSVLINGLCDKGIVSDSCVLLE 433
                                             ++ T++ +I  LC+   + ++ +++ 
Sbjct: 315 IGVYNSLVYVLTRENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMG 374

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           DMI KGI P+  T+      L +EG ++ L+ L++
Sbjct: 375 DMIMKGIVPTILTY---HAFLKQEGVDETLQLLRK 406



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 114/273 (41%), Gaps = 33/273 (12%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQ 158
           ++S++ +L K +  +   +L+   +    L  E F II+  +  +   V EA   +  M 
Sbjct: 213 FYSLLRALCKSKNIEDAEELLLMRKKFFPLTAEGFNIILDGWCNIIIDVAEAKRVWKEMS 272

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
            Y +T +  ++  ++S   K  N+     ++D MK R + P    Y+ L+    ++  + 
Sbjct: 273 SYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKRGWTPGIGVYNSLVYVLTRENCMK 332

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----------------------- 254
            A++IF +++D G   ++ TY  M+  LC++ ++DEA                       
Sbjct: 333 DAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMGDMIMKGIVPTILTYHAFL 392

Query: 255 --------LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
                   L +++ M    C P S  + +L+  +   N   +A+  + EM +  I    +
Sbjct: 393 KQEGVDETLQLLRKMKENGCGPNSDTFLMLIDKFIQANESGNALRVWNEMIRYDISPAYS 452

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
            Y A+I    K            +M +KG A +
Sbjct: 453 HYMAVIQGLVKHGCIPRALEYYDEMKAKGFASD 485


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 185/372 (49%), Gaps = 6/372 (1%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
           +E  +  + S+I       + +    +VN M    +  +V  +  I+    +   V+ A+
Sbjct: 137 FEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNAL 196

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
             FN M+ YG+  ++  +  L++ LC S   R A  +   M  R I PD  T++ L++ +
Sbjct: 197 SLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAF 256

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K+  L  A+E++ EM+     P+I TY  +++ LC  GR+DEA  +   M++  C P  
Sbjct: 257 VKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDV 316

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L++ +    ++EDA+  F EM + G+  +   Y  LI  F    K      V   
Sbjct: 317 VAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGH 376

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYTMMIKMFCQ 386
           M S+GV PN RT N++L+ L   G+ ++A  +F    +R I     +  TY +++   C 
Sbjct: 377 MVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCY 436

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+LEKA  V+  M+ +     + T++++I G+C  G V D+  L   +  KG++P+  T
Sbjct: 437 NGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVT 496

Query: 447 FGKLRKLLIKEG 458
           +  +   L +EG
Sbjct: 497 YTTMISGLFREG 508



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 174/381 (45%), Gaps = 18/381 (4%)

Query: 86  WAEKQQNYEHSVR-AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYAR 143
           W     NY   +R   HS+        Q+    DL + M   R L ++  F  ++   A+
Sbjct: 32  WVRAFCNYREILRNGLHSL--------QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAK 83

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
           ++K +  +     +Q  GV+ +L   N L++  C+S     A       MK  F PD  T
Sbjct: 84  MKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFT 143

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           ++ L+ G+     +  A  +  +MV+ G  PD+V Y  ++D LCK G VD AL +   M+
Sbjct: 144 FTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQME 203

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           +   RP   +Y+ LV+      R  DA      M K  I  DV  +NALI AF K  K  
Sbjct: 204 NYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLL 263

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
           +   +  +M    +APN  T   ++NGL   G  DEA ++F  M  K C  D   YT +I
Sbjct: 264 DAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLI 323

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE---DMIEK 438
             FC+  ++E A K++  M  K    +  T++ LI G    G+V    V  E    M+ +
Sbjct: 324 NGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGF---GLVGKPNVAQEVFGHMVSR 380

Query: 439 GIRPSGETFGKLRKLLIKEGR 459
           G+ P+  T+  L   L   G+
Sbjct: 381 GVPPNIRTYNVLLHCLCYNGK 401



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 141/277 (50%), Gaps = 9/277 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++++I++  K  +     +L N M    +  N+ T+  ++       +++EA   F 
Sbjct: 246 VITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFY 305

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG--K 212
           +M+  G   ++ A+  L++  CK K V  A +IF  M  +    ++ TY+ L++G+G   
Sbjct: 306 LMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVG 365

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS---TVCRPT 269
            PN+  A+E+F  MV  G  P+I TY +++  LC  G+V++AL I + M         P 
Sbjct: 366 KPNV--AQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPN 423

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+VL+H      ++E A+  F +M+K  +   +  Y  +I   CKA K K+   +  
Sbjct: 424 IRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFC 483

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            + SKGV PN  T   +++GL   G   EA+ +FR+M
Sbjct: 484 SLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKM 520



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 5/210 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY S+I    K ++ +    +   M  K +  N  T+  +++ +  V K   A   F 
Sbjct: 316 VVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFG 375

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI----PDSKTYSILLEGWG 211
            M   GV  N+  +N LL  LC +  V KA  IF+ M+ R I    P+ +TY++LL G  
Sbjct: 376 HMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLC 435

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            +  L +A  +F +M     +  I+TY I++  +CKAG+V +AL +  S+ S   +P   
Sbjct: 436 YNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVV 495

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
            Y+ ++     E  + +A   F +M+++G+
Sbjct: 496 TYTTMISGLFREGLMLEAHVLFRKMKEDGV 525



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q +   ++  Y S+I  L    +      +   M TK    +V  +  ++  + + +KVE
Sbjct: 274 QMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVE 333

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILL 207
           +A+  F  M + G+T N   +  L+           AQE+F  M  R +P + +TY++LL
Sbjct: 334 DAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLL 393

Query: 208 EGWGKDPNLPRAREIFREM----VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
                +  + +A  IF +M    +D G  P+I TY +++  LC  G++++AL +   M  
Sbjct: 394 HCLCYNGKVNKALMIFEDMQKREID-GVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQK 452

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
                    Y++++       +++DA++ F  +   G+  +V  Y  +I    +      
Sbjct: 453 RDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLE 512

Query: 324 VYRVLKDMNSKGVA 337
            + + + M   GV+
Sbjct: 513 AHVLFRKMKEDGVS 526


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 185/382 (48%), Gaps = 8/382 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK+ ++ ++  L   M+   +  N+ T+ I +  + R  ++  A+   
Sbjct: 74  SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAIL 133

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   N LL+  C    + +A  + D M +  + PD+ T++ L+ G  + 
Sbjct: 134 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+VTYG +++ LCK G  D AL ++  M+         IY
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++        ++DA D F +ME  GI  DV  YN LI   C   ++ +  R+L DM  
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELE 391
           K + P+    N +++  +  G+  EA +++  M+K   C  D   Y  +IK FC+   +E
Sbjct: 314 KNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVE 373

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +  +V++ M  +  + +  T++ LI+G        ++ ++ + M+  G+ P   T+  L 
Sbjct: 374 EGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILL 433

Query: 452 KLLIKEGRED----VLKFLQEK 469
             L   G  +    V +++Q++
Sbjct: 434 DGLCNNGNVETALVVFEYMQKR 455



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 185/375 (49%), Gaps = 4/375 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           +  Y+     + +++  L +  +      LV  M  K    ++ T+  ++    +  + +
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   N M+K  +  ++  +N ++  LCK K++  A ++F+ M+ + I PD  TY+ L+
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVC 266
                      A  +  +M++   NPD+V +  ++D   K G++ EA  +   M  S  C
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHC 352

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ L+  +    R+E+ ++ F EM + G++ +   Y  LI  F +A    N   
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           V K M S GV P+  T NI+L+GL   G  + A  VF  M K   + D  TYT MI+  C
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALC 472

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G++E  + ++  + LK   P++ T++ +++G C KG+  ++  L  +M E G  P+  
Sbjct: 473 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSG 532

Query: 446 TFGKLRKLLIKEGRE 460
           T+  L +  +++G E
Sbjct: 533 TYNTLIRARLRDGDE 547



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           D +K R  P    +S LL    K         +  +M + G + ++ TY I ++  C+  
Sbjct: 65  DMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRS 124

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           ++  AL I+  M      P+    + L++ +   NRI +AV    +M + G   D   + 
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
            L+    + NK      +++ M  KG  P+  T   ++NGL  RGE D A  +  +M K 
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 244

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             EAD   Y  +I   C+   ++ AF ++  M+ K   P + T++ LI+ LC+ G  SD+
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             LL DM+EK I P    F  L    +KEG+
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 43/361 (11%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK------- 126
           R    LA       EK +  E  V  Y+++I+ L K +     +DL N M TK       
Sbjct: 228 RGEPDLALNLLNKMEKGK-IEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF 286

Query: 127 -------------------RML----------NVETFCIIMRKYARVQKVEEAVYTFNVM 157
                              R+L          ++  F  ++  + +  K+ EA   ++ M
Sbjct: 287 TYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346

Query: 158 QKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
            K      ++ A+N L+   CK K V +  E+F  M  R  + ++ TY+ L+ G+ +  +
Sbjct: 347 VKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARD 406

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+ +F++MV  G +PDI+TY I++D LC  G V+ AL + + M     +     Y+ 
Sbjct: 407 CDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTT 466

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++       ++ED  D F  +   G+  +V  Y  ++  FC+    +    +  +M   G
Sbjct: 467 MIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEKA 393
             PNS T N ++   +  G+   +  + + M + C    DA T+ ++  M    G L+K+
Sbjct: 527 PLPNSGTYNTLIRARLRDGDEAASAELIKEM-RSCGFAGDASTFGLVTNML-HDGRLDKS 584

Query: 394 F 394
           F
Sbjct: 585 F 585



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 41/200 (20%)

Query: 61  VSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           V P+I+    +L+   N G +  A   F++ +K+ + +  +  Y +MIE+L K  + +  
Sbjct: 422 VHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR-DMKLDIVTYTTMIEALCKAGKVEDG 480

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           WDL              FC +  K                    GV  N+  +  ++S  
Sbjct: 481 WDL--------------FCSLSLK--------------------GVKPNVVTYTTMMSGF 506

Query: 177 CKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           C+     +A  +F  MK D  +P+S TY+ L+    +D +   + E+ +EM   G   D 
Sbjct: 507 CRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDA 566

Query: 236 VTYGIMVDVLCKAGRVDEAL 255
            T+G++ ++L   GR+D++ 
Sbjct: 567 STFGLVTNML-HDGRLDKSF 585


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 199/420 (47%), Gaps = 38/420 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S++ Y +++ +L K R  +++  L+  M    +  NV TF I +R   R  K++EA   F
Sbjct: 226 SLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M   G   +L  +  L+ ALC +  +  A+E+F  MK +   PD   Y  LL+ +   
Sbjct: 286 RRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDF 345

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------------------------- 247
            +L   +E + +M   G  PD+VT+ I+VDVLCK                          
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405

Query: 248 ---------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
                    AGR+++AL ++ +M+S   +PT++ Y   +  +G       AV+TF +M+ 
Sbjct: 406 NTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKA 465

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI+ ++   NA + +  +  + +    +   +   G+AP+S T N+++      G+ DE
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDE 525

Query: 359 AYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  +   MI+  CE D      +I    + G +++A++++  MK  +  P++ T++ L++
Sbjct: 526 AVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLS 585

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           GL  +G V  +  L E MI K   P+  +F  L     K    ++   +  KM ++  +P
Sbjct: 586 GLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKP 645



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 210/476 (44%), Gaps = 46/476 (9%)

Query: 36  KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH 95
           K   ++ L +P+ V+     ++ IRVS + V  VL+   +    A  +F    +     H
Sbjct: 63  KDFCRLALQNPEQVM-VVKGKTEIRVSEDEVLGVLKSMTDP-IRALSYFYSISEFPTVLH 120

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +    + M+E L    + + M  +   M+ K +  +++T+  I +  +    + +     
Sbjct: 121 TTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVL 180

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           N M+K G   N  ++NGL+  L +S    +A E++  M  +   P  KTYS L+   GK 
Sbjct: 181 NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKK 240

Query: 214 -------------------PN----------------LPRAREIFREMVDTGCNPDIVTY 238
                              PN                +  A EIFR M D GC PD+VTY
Sbjct: 241 RDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTY 300

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            +++D LC AG+++ A  +   M +   +P   IY  L+  +     ++   + + +ME 
Sbjct: 301 TVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
           +G + DV  +  L+   CKA  F   +     M  +G+ PN  T N ++ GL+  G  ++
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIED 420

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A ++   M  +  +  A TY   I  F + GE  KA + ++ MK K  +P++   +  + 
Sbjct: 421 ALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            L + G + ++  +   + E G+ P   T+  + K   K G+ D      E +NLL
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD------EAVNLL 530



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 165/334 (49%), Gaps = 3/334 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M +V TF I++    + +  +EA  TF+VM+K G+  NL  +N L+  L ++  +  A +
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           + D M+   + P + TY   ++ +GK     +A E F +M   G  P+IV     +  L 
Sbjct: 424 LLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLA 483

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + GR+ EA  +   +      P S  Y++++  Y    ++++AV+   EM +NG   DV 
Sbjct: 484 EMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVI 543

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           + N+LI +  KA +    +++   M    ++P   T N +L+GL   G   +A  +F  M
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           I K C  +  ++  ++  FC+  E+E A K++  M +    P + T++ +I GL  +  V
Sbjct: 604 IXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKV 663

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           + +      + +K + P   T   L   L+K G+
Sbjct: 664 NHAFWFFHQL-KKSMHPDHVTICTLLPGLVKCGQ 696



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 189/403 (46%), Gaps = 5/403 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           V+  I+ DVL K R+    AF  F    ++Q    ++  Y+++I  L +  + +    L+
Sbjct: 368 VTFTILVDVLCKARDFDE-AFATFD-VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425

Query: 121 NAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           + M +  +     T+   +  + +  +  +AV TF  M+  G+  N+ A N  L +L + 
Sbjct: 426 DTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEM 485

Query: 180 KNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             +R+A+ +F+ +++    PDS TY+++++ + K   +  A  +  EM+  GC PD++  
Sbjct: 486 GRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVV 545

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++D L KAGRVDEA  +   M      PT   Y+ L+   G E R++ A++ F  M  
Sbjct: 546 NSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIX 605

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
                +   +N L+  FCK ++ +   ++   M      P+  T N ++ GLI   + + 
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK-YMKLKRFIPSMHTFSVLIN 417
           A+  F ++ K    D  T   ++    + G++  A  + + +M   RF  +   +  L+ 
Sbjct: 666 AFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMG 725

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           G   +  +  + +  E+++  GI         L ++L K  RE
Sbjct: 726 GTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRE 768



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 150/309 (48%), Gaps = 3/309 (0%)

Query: 172  LLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+  LCK K    A +IFD    +    P   +Y+ L+    +     +A ++F++M + 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 230  GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
            GC PD  T+ +++ V  K+G++ E   + K M S  C+P +  Y++++ +    N ++ A
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 290  VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +D F ++  +        Y  LI    K  + +   R+ ++M+  G  PN    NI++NG
Sbjct: 878  LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILING 937

Query: 350  LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                G+T+ A ++F+RM+ +    D  +YT+++   C  G +++A   +  +K     P 
Sbjct: 938  YGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 409  MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
               ++ +INGL     + ++  L  +M  +GI P   T+  L   L   G  +  K + E
Sbjct: 998  FIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYE 1057

Query: 469  KMNLLVKEP 477
            ++ L   EP
Sbjct: 1058 ELQLAGLEP 1066



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 162/341 (47%), Gaps = 3/341 (0%)

Query: 80   AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
            A+  F    K+     ++ +Y+ +I  L ++   +  WDL   M+      +  TF +++
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 139  RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFI 197
              + +  K+ E    +  M       +   +N ++S+L KS N+ KA + F D +   F 
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 198  PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
            P  +TY  L++G  K   L  A  +F EM D GC P+   + I+++   K G  + A  +
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 258  VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
             K M +   RP    Y++LV    +  R+++A+  F E++  G+  D   YN +I    K
Sbjct: 951  FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGK 1010

Query: 318  ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADT 376
            + + +    +  +M ++G+ P+  T N ++  L   G  ++A R++  + +   E D  T
Sbjct: 1011 SQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFT 1070

Query: 377  YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            Y  +I+ +      E A+ V+K M +    P++ T++ L N
Sbjct: 1071 YNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 147/309 (47%), Gaps = 2/309 (0%)

Query: 144  VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKT 202
            V   E+A   F  M+  G   +   FN LL+   KS  + +  E++ + +  R  PD+ T
Sbjct: 801  VHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860

Query: 203  YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            Y+I++    K  NL +A + F ++V +   P   TYG ++D L K GR++EA+ + + M 
Sbjct: 861  YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920

Query: 263  STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               C+P   I+++L++ YG     E A   F  M   GI  D+  Y  L+   C A +  
Sbjct: 921  DYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD 980

Query: 323  NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
                   ++ S G+ P+    N I+NGL      +EA  ++  M  +    D  TY  ++
Sbjct: 981  EALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040

Query: 382  KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
                  G +E+A ++++ ++L    P + T++ LI G         +  + ++M+  G  
Sbjct: 1041 LNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCN 1100

Query: 442  PSGETFGKL 450
            P+  T+ +L
Sbjct: 1101 PNIGTYAQL 1109



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 182/386 (47%), Gaps = 17/386 (4%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  V   +S+I+SL K  +    W + + M+  ++   V T+  ++    +  +V++A+ 
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKDRFIPDSKTYSIL 206
            F  M     + N  +FN LL   CK+  V  A ++F      DC      PD  TY+ +
Sbjct: 599 LFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK-----PDVLTYNTV 653

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTV 265
           + G  K+  +  A   F ++  +  +PD VT   ++  L K G++ +A+ I +  M    
Sbjct: 654 IYGLIKENKVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R     +  L+    VE  ++ A+    E+  NGI  + +    L+   CK  +    Y
Sbjct: 713 FRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAY 772

Query: 326 RVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           ++      K G++P   + N ++  L+    T++A+ +F+ M  + C  DA T+ M++ +
Sbjct: 773 QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             + G++ + F+++K M  +R  P   T++++I+ L     +  +     D++    RP+
Sbjct: 833 HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQE 468
             T+G L   L K GR E+ ++  +E
Sbjct: 893 PRTYGPLIDGLAKVGRLEEAMRLFEE 918



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 24/291 (8%)

Query: 1    MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALD----- 55
            M+   H ++  I+      +   S     +A+     IS +  S+    LD ALD     
Sbjct: 828  MLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN---LDKALDFFYDL 884

Query: 56   -QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY--EHSVRAYHSMIESLAKIRQ 112
              S  R +P     +++     G L     +  E+  +Y  + +   ++ +I    KI  
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAM-RLFEEMSDYGCKPNCAIFNILINGYGKIGD 943

Query: 113  YQIMWDLVNAMRTKRMLN------VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
             +    L      KRM+N      ++++ I++       +V+EA+Y FN ++  G+  + 
Sbjct: 944  TETACQLF-----KRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 167  AAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             A+N +++ L KS+ + +A  +++ M++R  +PD  TY+ L+   G    + +A+ ++ E
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 226  MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +   G  PD+ TY  ++     +   + A  + K+M    C P    Y+ L
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAF 394
           V   + TCN +L  L    + ++   VF  M K +   D DTY  + K     G L +  
Sbjct: 118 VLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMT 177

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            V   M+   F+ + ++++ LI+ L   G   ++  +   M+ +G++PS +T+  L   L
Sbjct: 178 TVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVAL 237

Query: 455 IKEGREDVLKFLQEKMNLLVKEP 477
            K+   +++  L ++M  L   P
Sbjct: 238 GKKRDSEMVMVLLKEMEDLGLRP 260


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 198/435 (45%), Gaps = 43/435 (9%)

Query: 79  LAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNV--ETF 134
           LAF  F +A K    + H+   YHS+I+ L++ R +  +  L++ + R    +    + F
Sbjct: 30  LAFQIFDYAGKYHPGFSHTYDTYHSIIDKLSRARAFDGVESLLSQLSRNSSHIKCGDDVF 89

Query: 135 CIIMRKYARVQKVEEAVYTF-------------------------------------NVM 157
             ++R Y    +   A+ TF                                     N  
Sbjct: 90  ISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCK 149

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
            KYGV  N+ +FN L+ ALCK  +V  A ++FD M     IP+  TY+ +L G+    +L
Sbjct: 150 DKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDL 209

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++F E+ D G  PD  TY +++   CK GR+ +A+ ++ +M+     P    Y V+
Sbjct: 210 VNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVM 269

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y  E +  +A +   +M     L    +   +I   C+  K +N   + K M  K  
Sbjct: 270 IDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNC 329

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            P++   + +++ L   G+  EA ++F    +       TY  +I   C+ GEL +A ++
Sbjct: 330 LPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTIPSLMTYNTLIAGMCERGELNEAGRL 389

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           W  M  KR  P+  T+++LI G    G+V +   +LE+M++ G  P+  T+  L + L +
Sbjct: 390 WDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQE 449

Query: 457 EGRE-DVLKFLQEKM 470
            G E DV K +   M
Sbjct: 450 SGMEGDVDKVMSMAM 464



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 173/417 (41%), Gaps = 79/417 (18%)

Query: 55  DQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           + S I+   ++   V+  +  AG   LA   F   +++ + + SV+  ++++    + ++
Sbjct: 78  NSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKR 137

Query: 113 YQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           Y ++   +   + K   + NV +F I+++   +   VE A+  F+ M   G+  NL  + 
Sbjct: 138 YHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYT 197

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            +L       ++  A+++F  + D+ ++PD+ TY++L+ G+ K   L  A ++   M   
Sbjct: 198 TILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYN 257

Query: 230 GCNPDIVTYGIMVD-----------------------------------VLCKAGRVDEA 254
           G  P+ VTYG+M+D                                   VLC+ G+V+ A
Sbjct: 258 GVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENA 317

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA----------- 303
             + K M    C P + I S L+H    E ++ +A   F E E+  I +           
Sbjct: 318 CHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTIPSLMTYNTLIAGM 377

Query: 304 -----------------------DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                                  +   YN LI  F KA   K   R+L++M   G  PN 
Sbjct: 378 CERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNK 437

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI-----KMFCQGGELEK 392
            T  +++ GL   G   +  +V    +   E DAD++ + +      + C  G L++
Sbjct: 438 STYTLLIEGLQESGMEGDVDKVMSMAMASREVDADSWDLFLHKIVGNLDCGTGALDR 494


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 183/358 (51%), Gaps = 10/358 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I  L K  +    ++L++ MR + +   V     +++   +  +  +A+  F  + 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVA 92

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNL 216
               T ++  FN L+ AL KS  V +A +IF+ M    + +P+  TY+ ++ G  KD  L
Sbjct: 93  GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKL 152

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA E+   M +TGC P+++TY ++V+ LCKAGR D+   +++ M     +P   +Y+ L
Sbjct: 153 DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      R+++A++    M ++G    V  YN+L+  FC++ +    +R+++ M+ +G 
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ------GGE 389
            P+    N ++ GL      D+A  + ++M+   C  D  TY+ +I   C+        +
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           LE A ++ + MK     P+  T++V+I GLC       +  LL  MI+  + P   +F
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSF 390



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 156/300 (52%), Gaps = 3/300 (1%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIF 223
           N   +  L+  LCK+  + +A E+ D M+DR IP     ++ +++G  K      A   F
Sbjct: 29  NEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYF 88

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGV 282
           + +  T C PDI+T+ I+VD L K+GRV+EA  I +SM  S+ C P    Y+ +++    
Sbjct: 89  KTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCK 148

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           + +++ A++    M + G   +V  Y+ L+   CKA +    + +L++M  +G  P+   
Sbjct: 149 DGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIM 208

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N +LNGL      DEA  + + MI+  C     TY  ++++FC+  ++++AF++ + M 
Sbjct: 209 YNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +   P +  ++ +I GLC    + D+  LL+ M+     P   T+  +   L K+ R D
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 172/353 (48%), Gaps = 10/353 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYT 153
           +V  Y  ++E L K  +    + L+  M T+R    +V  +  ++    + ++++EA+  
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEM-TRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGK 212
             +M + G    +  +N L+   C+SK V +A  +   M +R  P D   Y+ ++ G  +
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE------ALGIVKSMDSTVC 266
           D  L  A+ + ++MV   C PD++TY  ++D LCK  RVD       A  I++ M  T C
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  Y+V++       + + A+     M  + ++ D++ ++ +IG+ CK++     Y+
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYK 408

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +   M+ +   PN      +++GL   GE D+A RVF  M++       TY  ++   C 
Sbjct: 409 IFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCG 468

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
            G +E+A ++ + M  K   P   ++  LI GLC    V ++  L + +  KG
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKG 521



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 161/338 (47%), Gaps = 10/338 (2%)

Query: 120 VNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           V   R +R +  E T+  ++    +  K+++A    + M+  G+   +A  NG++  LCK
Sbjct: 18  VQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCK 77

Query: 179 SKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNPDIV 236
           +     A   F  +   +  PD  T++IL++   K   +  A +IF  M   + C P++V
Sbjct: 78  AGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVV 137

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  +++ LCK G++D A+ ++  M+ T C P    YSVLV       R +       EM
Sbjct: 138 TYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + G   DV MYN L+   CK+ +      +++ M   G  P   T N ++       + 
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           D A+R+ + M  + C  D   Y  +I   C+   L+ A  + K M   R +P + T+S +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 416 INGLC-DKGIVSD-----SCVLLEDMIEKGIRPSGETF 447
           I+GLC D  + +D     +C +LE M + G  P+  T+
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEE 149
           V  Y ++I+ L K  +    W L  A     M+       N  T+ +++    R +K ++
Sbjct: 311 VITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQ 370

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+     M    V  +L++F+ ++ +LCKS ++  A +IF  M +R   P+   Y+ L++
Sbjct: 371 ALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALID 430

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   + +A  +F  MV++   P + TY  ++D LC  GR++EA+ +V+ M    C P
Sbjct: 431 GLSKGGEVDKAVRVFELMVESF-RPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFP 489

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y  L+      + +E+A + F  +E  G   +V +YN L+   CK  +  + + V 
Sbjct: 490 DGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVA 549

Query: 329 KDMNSKG 335
             +   G
Sbjct: 550 NKLIEAG 556



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 1/202 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           KQ     +   Y  +IE L + R+ Q    L+  M    ++ ++ +F +++    +   +
Sbjct: 344 KQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDL 403

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
           + A   F +M +     N  A+  L+  L K   V KA  +F+ M + F P   TY+ +L
Sbjct: 404 DAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVL 463

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G      +  A  +   M+   C PD  +YG ++  LC+   V+EA  + +++++    
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 268 PTSFIYSVLVHTYGVENRIEDA 289
               +Y+VLV+    + R+ DA
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDA 545



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           N  LN L+  G+  +A ++FR   + C  +  TY  +I   C+ G+L++A+++   M+ +
Sbjct: 2   NCALNLLVRAGQHGQAVQLFRE--ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR 59

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              P +   + +I GLC  G   D+    + +      P   TF  L   L+K GR
Sbjct: 60  GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 214/456 (46%), Gaps = 46/456 (10%)

Query: 18  FLRRYNSSEP----STEALDAA------KSISKIMLSSP-KVVLDTALDQSGIRVSPEIV 66
           F+   +S +P      E L AA      +++++++ + P    L ++L +    +S   V
Sbjct: 132 FISSISSQQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTV 191

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
              L+  R     A  FF+W E +  + H+ ++Y  MIE L + R      + V ++  K
Sbjct: 192 LQTLQLIRTPAK-ALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKK 249

Query: 127 RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
                                 E++  F  M++ GV+ ++  FN LLS + K      A+
Sbjct: 250 ------------------SGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAK 291

Query: 187 EIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           ++FD M D +   PD+ T++IL+ G+  +  +      F+EM    C+PD+VTY  +VD 
Sbjct: 292 QLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDG 351

Query: 245 LCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           LC+AG+V  A  +VK M   S    P    Y+ L+  Y ++  + +A+    EM   G+ 
Sbjct: 352 LCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLK 411

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            +   YN LI   C+A K   +  +L+ M    G  P++ T N ++      G+ +EA+ 
Sbjct: 412 PNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFS 471

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-------PSMHTFS 413
           VF +M +L  + D+ TY+++++  CQ G+  +A + +  +  K  +       P +  ++
Sbjct: 472 VFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYN 531

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIR--PSGETF 447
            +   LC  G    +  +   ++++G +  PS +T 
Sbjct: 532 PMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTL 567



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 194/463 (41%), Gaps = 68/463 (14%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR---MLNVETFCI 136
            F FFK   + +  +  V  Y+++++ L +  + +I  ++V  M  K      NV T+  
Sbjct: 326 GFWFFKEMSRFK-CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTT 384

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KD 194
           ++R Y   Q + EA+     M   G+  N   +N L+  LC+++ + K +EI + M    
Sbjct: 385 LIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDG 444

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG---RV 251
            FIPD+ T + L++       L  A  +F +M +    PD  TY ++V  LC+ G   R 
Sbjct: 445 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 504

Query: 252 DEALGIVKS----MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +E    +      +    C+P    Y+ +        + + A   F ++ K G   D   
Sbjct: 505 EEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGT-QDPPS 563

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI   C+    +  + +L  M  +   P++ T  ++++GL+ +G+   A++   +M+
Sbjct: 564 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 623

Query: 368 K----------------LCEA--------DADTYTM------------------------ 379
           K                L E         D  T+T+                        
Sbjct: 624 KSSHLPTTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGY 683

Query: 380 ------MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
                 ++   CQ  +L +A K+  +   KR    +   S +I+GLC    VS++  L  
Sbjct: 684 LVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYY 743

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           +++EKG++        LR  L  EGR +  KF+ +KM  + K+
Sbjct: 744 ELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKMPEVPKQ 786


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 189/411 (45%), Gaps = 3/411 (0%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121
            PE++  V+++ ++   +AF +F+W E++    H    Y++ +  +A+ R    +  ++ 
Sbjct: 99  QPEVIVGVMKRLKDV-NVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILE 157

Query: 122 AMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
            M      L+      ++  + +  K++EA     +M+K+      +A+  L+ AL  + 
Sbjct: 158 EMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAAN 217

Query: 181 NVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                  +F  M++  +  +   ++ L+  + ++  +  A  +  EM       D+V Y 
Sbjct: 218 RPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYN 277

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           + +D   K G+VD A      M +    P    Y+ L+       R+++AV+ F E++ N
Sbjct: 278 VCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLN 337

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
             +  V  YN +I  +  A KF   Y +L+    KG  P+    N IL  L  +G+ +EA
Sbjct: 338 RSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEA 397

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            R+   M +    +  TY ++I M C+ GELE A KV   MK     P++ T +++I+ L
Sbjct: 398 LRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRL 457

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           C    + ++C +   +  K   P   TF  L   L + GR D    L EKM
Sbjct: 458 CKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKM 508



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 180/356 (50%), Gaps = 3/356 (0%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           R + S+I+ L +  +    + L   M  + ++ NV  +  +++ + +  + E+    +  
Sbjct: 483 RTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKE 542

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M   G + +L   N  +  + K+  V K + +F+ +K +  +PD ++YSIL+ G  K   
Sbjct: 543 MVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGF 602

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
                ++F EM + G + D++ Y  ++D  CK+G+VD+A  +++ M +   +PT   Y  
Sbjct: 603 SRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGS 662

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +V      +R+++A   F E +  G+  +V +Y++LI  F K  +    Y +L+++  KG
Sbjct: 663 VVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 722

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + PNS T N +L+ L+   E DEA   F+ M  L C  +A TY++MI   C   +  KAF
Sbjct: 723 LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAF 782

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             W+ M+ +   P+  T++ +I GL   G V ++  L +     G  P    +  +
Sbjct: 783 VFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAM 838



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 188/385 (48%), Gaps = 3/385 (0%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCII 137
           +A+ FF   + Q      V  Y ++I  L K R+     +L   +   R +  V  +  +
Sbjct: 291 MAWKFFHEMKAQGLVPDDV-TYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTM 349

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +  Y    K +EA       ++ G   ++ A+N +L+ L +   V +A  I D M+    
Sbjct: 350 IMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAA 409

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  TY+IL++   K   L  A ++   M + G  P+I+T  IM+D LCKA ++DEA  I
Sbjct: 410 PNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSI 469

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              +D  VC P S  +  L+   G   R++DA   + +M  +  + +V +Y +LI  F K
Sbjct: 470 FLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFK 529

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADT 376
             + ++ +++ K+M  +G +P+    N  ++ +   GE ++   +F  +  +    D  +
Sbjct: 530 CGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRS 589

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+++I    + G   + +K++  MK +     +  ++ +I+G C  G V  +  LLE+M 
Sbjct: 590 YSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMK 649

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
            KG++P+  T+G +   L K  R D
Sbjct: 650 TKGLQPTVVTYGSVVDGLAKIDRLD 674



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 130/264 (49%), Gaps = 2/264 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+Q     V AY+++I+   K  +    + L+  M+TK +   V T+  ++   A++ ++
Sbjct: 614 KEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRL 673

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           +EA   F   +  GV  N+  ++ L+    K   + +A  I +  M+    P+S T++ L
Sbjct: 674 DEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCL 733

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L+   K   +  A+  F+ M +  C+P+ +TY IM++ LC   + ++A    + M     
Sbjct: 734 LDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGL 793

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P +  Y+ ++        + +A   F   + +G + D A YNA+I     ANK  + Y 
Sbjct: 794 KPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYI 853

Query: 327 VLKDMNSKGVAPNSRTCNIILNGL 350
           V ++   KG   NS+TC ++L+ L
Sbjct: 854 VFEETRLKGCRVNSKTCVVLLDAL 877



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 171/395 (43%), Gaps = 39/395 (9%)

Query: 32  LDAAKSISKIMLSS---PKVVLDTALDQS---------GIRVSPEIVED-------VLEK 72
           +D A S+ + ML S   P VV+ T+L Q+         G ++  E+V         +L  
Sbjct: 498 VDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNS 557

Query: 73  FRNAGTLAFCFFKWAE-----------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121
           + +      C FK  E           K Q     VR+Y  +I  L K    +  + L  
Sbjct: 558 YMD------CVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFY 611

Query: 122 AMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
            M+ + + L+V  +  ++  + +  KV++A      M+  G+   +  +  ++  L K  
Sbjct: 612 EMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKID 671

Query: 181 NVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            + +A  +F+  K   +  +   YS L++G+GK   +  A  I  E++  G  P+  T+ 
Sbjct: 672 RLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWN 731

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++D L KA  +DEA    ++M +  C P +  YS++++   +  +   A   + EM+K 
Sbjct: 732 CLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQ 791

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  +   Y  +I    KA        +     + G  P+S   N ++ GL    +  +A
Sbjct: 792 GLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDA 851

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           Y VF    +K C  ++ T  +++    +   LE+A
Sbjct: 852 YIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 203/461 (44%), Gaps = 46/461 (9%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGIRVSPE 64
           H  N M  G +  LRR    +P +  LD     I KI    P    + AL+   ++V P 
Sbjct: 35  HLNNSMKGGHV--LRR----DPYSRTLDERFIRILKIFKWGPDA--EKALEVLKLKVDPR 86

Query: 65  IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM- 123
           +V ++L K     ++   FFKWA K++N+EH    Y ++I  L + R +  +W  +  M 
Sbjct: 87  LVREIL-KIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDMV 145

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           +    +       I+R   + + V  A+  F  ++        + +N ++  L +  +  
Sbjct: 146 KGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHE 205

Query: 184 KAQEIFD--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           K  E+++  C +    PD+ TYS L+  + K      A  +F EM + G  P    Y  +
Sbjct: 206 KVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTL 265

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           + +  K G+V+EALG+VK M +  C  T F Y+ L+   G   R+EDA  T+  M K+G 
Sbjct: 266 MGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGC 325

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             DV + N LI    ++N  ++  ++  +M     APN  T N I+  L           
Sbjct: 326 KPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLF---------- 375

Query: 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                    EA A               L +A   ++ MK    +PS  T+S+LI+G C 
Sbjct: 376 ---------EAKA--------------PLSEASSWFERMKKDGIVPSSFTYSILIDGYCK 412

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
              V  + +LLE+M EKG  P    +  L   L    R DV
Sbjct: 413 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDV 453



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 176/384 (45%), Gaps = 43/384 (11%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKV 147
           K+   + + + Y +++    K+ + +    LV  MR +R +L V T+  ++R   +  +V
Sbjct: 251 KENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRV 310

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-------------- 193
           E+A  T+  M K G   ++   N L++ L +S ++R A ++FD MK              
Sbjct: 311 EDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTI 370

Query: 194 -----------------------DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
                                  D  +P S TYSIL++G+ K   + +A  +  EM + G
Sbjct: 371 IKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKG 430

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P    Y  +++ L  A R D A  + + +       ++ +Y+V++  +G   R+ +A+
Sbjct: 431 FPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAI 490

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           + F EM+K G   DV  YNAL+    +A +    + + + M   G  P+  + NIILNGL
Sbjct: 491 NLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGL 550

Query: 351 IGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G    A  +F +M     + D  ++  ++    + G  E+A K+ + M  K F   +
Sbjct: 551 ARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDL 610

Query: 410 HTFSVLINGLCDKGIVSDSCVLLE 433
            T+S ++  +   G V D C ++E
Sbjct: 611 ITYSSILEAV---GKV-DDCKMVE 630



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 169/375 (45%), Gaps = 5/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I + AK+ +      L + M+   +    + +  +M  Y +V KVEEA+     M
Sbjct: 226 TYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEM 285

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
           +       +  +  L+  L KS  V  A   + + +KD   PD    + L+   G+  +L
Sbjct: 286 RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHL 345

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKA-GRVDEALGIVKSMDSTVCRPTSFIYSV 275
             A ++F EM    C P++VTY  ++  L +A   + EA    + M      P+SF YS+
Sbjct: 346 RDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSI 405

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y   NR+E A+    EM++ G     A Y +LI     A ++     + +++    
Sbjct: 406 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENC 465

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
              ++R   +++      G  +EA  +F  M KL C  D   Y  ++    +   +++AF
Sbjct: 466 GCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAF 525

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +++ M+     P +++ ++++NGL   G    +  +   M    I+P   +F  +   L
Sbjct: 526 SLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCL 585

Query: 455 IKEGR-EDVLKFLQE 468
            + G  E+  K +QE
Sbjct: 586 SRAGLFEEAAKLMQE 600



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 3/264 (1%)

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPT 269
           GK   + RA  +F ++    C P   TY  ++ +L + G  ++   +   M S V C P 
Sbjct: 164 GKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPD 223

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           +  YS L+  +   NR + A+  F EM++NG+     +Y  L+G + K  K +    ++K
Sbjct: 224 TVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVK 283

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG 388
           +M ++       T   ++ GL   G  ++AY  ++ M+K  C+ D      +I +  +  
Sbjct: 284 EMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSN 343

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD-KGIVSDSCVLLEDMIEKGIRPSGETF 447
            L  A K++  MKL    P++ T++ +I  L + K  +S++    E M + GI PS  T+
Sbjct: 344 HLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTY 403

Query: 448 GKLRKLLIKEGREDVLKFLQEKMN 471
             L     K  R +    L E+M+
Sbjct: 404 SILIDGYCKTNRVEKALLLLEEMD 427


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 225/468 (48%), Gaps = 45/468 (9%)

Query: 28  STEALDAAKSISKIM-----LSSPKVVLDTALDQSGIRVSPEIVEDVLE--KFRNAGTLA 80
           S++ LD +  +++I+      S+ +  LD+   +  +++SP  V  VL+  + R    +A
Sbjct: 74  SSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVA 133

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMR 139
             FF WA KQ+ Y H +  + S+IE L        +  +   ++ + +L  E+    +++
Sbjct: 134 VRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIK 193

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIP 198
            +  +  VEE ++ +  M++ G+  +L  +N L++ L  S  +  A+++F+ M   + +P
Sbjct: 194 SFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVP 253

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT--------------------- 237
           D+ TY+I+++G+ K   L +A E FR+M      PD +T                     
Sbjct: 254 DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLY 313

Query: 238 --------------YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
                         Y +++  LCK  +  EA  + ++M+   CR    IY+ L+ +Y   
Sbjct: 314 LEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKN 373

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
             +E+A+  F  M+  G   D   Y+ L+   CK+ +  +   +     +KGVA N+   
Sbjct: 374 GSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFY 433

Query: 344 NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             +++GL   G  ++A  +F  M  K C  D+  Y  +I    + G++++A  ++  M+ 
Sbjct: 434 ASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEE 493

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +    +++TF++LI+GL  +    ++    + MI+KGI P+  +F  L
Sbjct: 494 EGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRAL 541



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 208/465 (44%), Gaps = 53/465 (11%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAK--- 109
           L   G+ ++      +++ F N G +    + W   ++N  + S+  Y+ ++  L     
Sbjct: 176 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 235

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF------NV------- 156
           I   + ++++++    K + +  T+ I+++ Y +  K+++A+  F      NV       
Sbjct: 236 IESAEKVFEVMDG--GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITY 293

Query: 157 ----------------------MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
                                 M++ G+     +++ ++  LCK +   +A  +F+ M  
Sbjct: 294 MTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQ 353

Query: 195 RFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +    +   Y+ L++ + K+ ++  A  +F  M + G  PD VTY ++V+ LCK+GR+D+
Sbjct: 354 KGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDD 413

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
            + +     +      +  Y+ L+   G   RIEDA + F EM + G   D   YNA+I 
Sbjct: 414 GMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIID 473

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEA 372
           A  K  K      +   M  +G      T  I+++GL    + +EA + + +MI K    
Sbjct: 474 ALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITP 533

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
              ++  +    C  G++ +A K+   +     IP    F  +IN LC    + ++C L 
Sbjct: 534 TVASFRALAIGLCLCGKVARACKILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLA 592

Query: 433 EDMIEKGIRPSGETFGKLRKLLI----KEGRED-VLKFLQEKMNL 472
           + ++++G     E  G++R +LI    K G  D V+K +  K+ +
Sbjct: 593 DGIVDRG----REIPGRIRTVLINALRKAGNSDLVIKLMHSKIGI 633


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 179/355 (50%), Gaps = 3/355 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +VR Y  ++ +L +  +     +L + MR +    N+ T+ +++    +  K+EE     
Sbjct: 73  TVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRIL 132

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M + G+  ++  +N L+   CK   V  AQEI D M      P+ +TY+ L+ G+ + 
Sbjct: 133 DEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRK 192

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ RA  +  +M+++   P +VTY  ++   CK G +D A  ++  M+     P  + Y
Sbjct: 193 KNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTY 252

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           SV + T   + RIE+A   F  +++ GI A+  +Y ALI  +CKA K  +   +L  M +
Sbjct: 253 SVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLT 312

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +   PNS T N +++GL    +  EA  +   MI K  +    TYT++I    + G+ + 
Sbjct: 313 EDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDY 372

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           A ++   M    + P ++ ++  I+  C +G + ++  ++  M E+G+ P   T+
Sbjct: 373 AHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTY 427



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 175/343 (51%), Gaps = 2/343 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  ++  ++     V +V+E +  F  M++      +  +  ++ AL +S    +A  +F
Sbjct: 38  NEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLF 97

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M++R   P+  TY++++    K+  L   R I  EMV+ G  P + TY  ++D  CK 
Sbjct: 98  SEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKE 157

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V+ A  I+  M S  C P    Y+ L+  +  +  +  A+    +M ++ +   V  Y
Sbjct: 158 GMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTY 217

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N+LI   CK     + YR+L  MN  GV P+  T ++ ++ L  +G  +EA  +F  +  
Sbjct: 218 NSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKE 277

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  +A+   YT +I  +C+ G+++ A  +   M  +  +P+  T++ LI+GLC +  V +
Sbjct: 278 KGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQE 337

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + +L+E MI+KG++ +  T+  L   ++KEG  D    + ++M
Sbjct: 338 ALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQM 380



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 178/401 (44%), Gaps = 32/401 (7%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           SV  Y+S+I    KI      + L+N M    ++  + T+ + +    +  ++EEA   F
Sbjct: 213 SVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLF 272

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           N +++ G+  N   +  L+   CK+  +  A  + D M  +  +P+S TY+ L++G  K+
Sbjct: 273 NSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKE 332

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   M+  G    + TY I++  + K G  D A  I+  M S+  +P  +IY
Sbjct: 333 RKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIY 392

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +H +     I++A D    M + G++ D   Y  +I A+         + VLK M  
Sbjct: 393 TAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFD 452

Query: 334 KGVAPNSRTCNIILNGLIGRGET-----------------------------DEAYRVFR 364
            G  P+  T + ++  L+    T                             + A  +F 
Sbjct: 453 TGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFE 512

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           +M++  C  + +TY  +I   C+ G L  A K++ +M  +   PS   ++ L+N  C+ G
Sbjct: 513 KMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELG 572

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           I  D+  L+  M+E G  P  E+   L   L +EG ++  K
Sbjct: 573 IYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAK 613



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 178/386 (46%), Gaps = 34/386 (8%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNV 156
           R Y+ +I    + +       L++ M   R+  +V T+  ++    ++  ++ A    N+
Sbjct: 180 RTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNL 239

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT-YSILLEGWGKDPN 215
           M + GV  +   ++  +  LCK   + +A  +F+ +K++ I  ++  Y+ L++G+ K   
Sbjct: 240 MNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGK 299

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +   M+   C P+  TY  ++D LCK  +V EAL +++SM     + T   Y++
Sbjct: 300 MDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTI 359

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+     E   + A     +M  +G   DV +Y A I AFC     K    ++  M  +G
Sbjct: 360 LIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERG 419

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           V P++ T  ++++   G G  + A+ V +RM    C+    TY+ +IK   +  EL K +
Sbjct: 420 VMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLK-EELTKKY 478

Query: 395 K------------------VWKYMKLKRFI------------PSMHTFSVLINGLCDKGI 424
           K                  VWK MK +  +            P+++T++ LI GLC  G 
Sbjct: 479 KNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGR 538

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKL 450
           +  +  L + M E+G+ PS   +  L
Sbjct: 539 LGVAQKLFDHMNERGVSPSEAIYNSL 564



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 1/242 (0%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  +F  M   GC  + V+Y  ++  LC+ GRVDE + I K M    C PT   Y+V+VH
Sbjct: 23  AFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVH 82

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 R  +A++ F EM + G   ++  Y  +I A CK  K +   R+L +M  KG+ P
Sbjct: 83  ALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVP 142

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N +++G    G  + A  +   M    C  +  TY  +I  FC+   + +A  + 
Sbjct: 143 SVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALL 202

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M   R  PS+ T++ LI+G C  G +  +  LL  M E G+ P   T+      L K+
Sbjct: 203 SKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKK 262

Query: 458 GR 459
           GR
Sbjct: 263 GR 264



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 140/294 (47%), Gaps = 2/294 (0%)

Query: 179 SKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           + +V  A  +F+ M  +    ++ +Y+ L+ G  +   +     IF++M +  C P + T
Sbjct: 17  NNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT 76

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y ++V  L ++GR  EA+ +   M    C P    Y+V+++    E ++E+      EM 
Sbjct: 77  YTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV 136

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G++  V  YNALI  +CK    +    +L  M+S    PN RT N ++ G   +    
Sbjct: 137 EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVH 196

Query: 358 EAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A  +  +M++        TY  +I   C+ G L+ A+++   M     +P   T+SV I
Sbjct: 197 RAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFI 256

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + LC KG + ++ VL   + EKGI+ +   +  L     K G+ D    L ++M
Sbjct: 257 DTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 182/407 (44%), Gaps = 18/407 (4%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIES 106
           VL  +L + GI+ +  I   +++ +  AG +  A         +    +S   Y+++I+ 
Sbjct: 270 VLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNS-STYNALIDG 328

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L K R+ Q    L+ +M  K +   V T+ I++    +    + A    + M   G   +
Sbjct: 329 LCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPD 388

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +   + A C   N+++A+++   M +R  +PD+ TY+++++ +G    L  A ++ +
Sbjct: 389 VYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLK 448

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M DTGC+P   TY  ++  L K     E L   K  +  +C     ++   V       
Sbjct: 449 RMFDTGCDPSHHTYSCLIKHLLK-----EEL-TKKYKNVALCDSIPNVFFADVADVWKMM 502

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           + E A++ F +M ++G   ++  Y  LI   CK  +     ++   MN +GV+P+    N
Sbjct: 503 KFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYN 562

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC---QGGELEKAFKVWKYMK 401
            +LN     G   +A R+   M++           +  +FC   + G  EKA  V+  + 
Sbjct: 563 SLLNCCCELGIYGDAVRLVGAMME--HGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLL 620

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCV-LLEDMIEKGIRPSGETF 447
              +      + +LI+GL   G+ SD C  LL  M  +G +   +T+
Sbjct: 621 QCGYNDDEVAWKILIDGLLKNGL-SDGCSELLGVMEARGCQIHPQTY 666



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 4/156 (2%)

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTY 377
           N   + + V   M  KG   N  +   +++GL   G  DE   +F++M +  C     TY
Sbjct: 18  NDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTY 77

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T+++    + G   +A  ++  M+ +   P++HT++V+IN +C +  + +   +L++M+E
Sbjct: 78  TVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVE 137

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           KG+ PS  T+  L     KEG   +++  QE ++L+
Sbjct: 138 KGLVPSVPTYNALIDGYCKEG---MVEAAQEILDLM 170


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 173/340 (50%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           ++ I++    ++ +   A+     ++++ +  N+  ++ ++  LCK   V +A +++  M
Sbjct: 165 SYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEM 224

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             + I PD  TYSIL+ G+     L RA ++  EMV    NPDI TY I+VD LCK G+V
Sbjct: 225 VGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKV 284

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  ++  M          +YS L+  Y + N + +A   F  M + G+  DV  Y+ +
Sbjct: 285 KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIM 344

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I   CK  +      + ++++ K + P++ T   +++ L   G     + +F  M+   +
Sbjct: 345 INGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ 404

Query: 372 A-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY  +I   C+ G L++A  ++  MK +   P+++TF++L++GLC  G + ++  
Sbjct: 405 PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALE 464

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             +D++ KG   +  T+  +   L KEG  D    LQ +M
Sbjct: 465 FFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRM 504



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 168/342 (49%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T   +M+      KV+EA+   + +   G   +  ++  L++ +CK    R A  + 
Sbjct: 127 NTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLL 186

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             ++   I P+   YS++++   KD  +  A +++ EMV  G +PD+VTY I+V   C  
Sbjct: 187 RRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIV 246

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+++ A+ ++  M      P  + Y++LV     E ++++A +    M K  +  DV +Y
Sbjct: 247 GQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVY 306

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + L+  +C  N+  N  RV   M   GV P+    +I++NGL      DEA  +F  +  
Sbjct: 307 STLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ 366

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    D  TYT +I   C+ G +   + ++  M  +   P + T++ LI+ LC  G +  
Sbjct: 367 KNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDR 426

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  L   M ++ IRP+  TF  L   L K GR ++ L+F Q+
Sbjct: 427 AIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQD 468



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 158/348 (45%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y  +I+ L K       +DL   M  K +  +V T+ I++  +  V ++  A+   
Sbjct: 197 NVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLL 256

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
           N M    +  ++  +  L+ ALCK   V++A+ +   M    +  D   YS L++G+   
Sbjct: 257 NEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLV 316

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A+ +F  M   G  PD+  Y IM++ LCK  RVDEAL + + +      P +  Y
Sbjct: 317 NEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTY 376

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+       RI    D F EM   G   DV  YN LI A CK         +   M  
Sbjct: 377 TSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKD 436

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T  I+L+GL   G    A   F+ ++ K    +  TYT+MI   C+ G L++
Sbjct: 437 QAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDE 496

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           A  +   M+    I    TF ++I    DK     +  L+ +MI +G+
Sbjct: 497 ALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDR 195
           I+     V++   A+  +  M+   V  +    N +++  C    V  A   +   +K  
Sbjct: 64  ILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLG 123

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P++ T + L++G   +  +  A     +++  G     ++YGI+++ +CK G    A+
Sbjct: 124 YQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAI 183

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ ++    RP   IYS+++     +  +++A D + EM   GI  DV  Y+ L+  F
Sbjct: 184 RLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGF 243

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADA 374
           C   +      +L +M  + + P+  T  I+++ L   G+  EA  V   M+K C   D 
Sbjct: 244 CIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDV 303

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y+ ++  +C   E+  A +V+  M      P +H +S++INGLC    V ++  L E+
Sbjct: 304 VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEE 363

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR 459
           + +K + P   T+  L   L K GR
Sbjct: 364 IHQKNMVPDTVTYTSLIDCLCKSGR 388



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 137/279 (49%), Gaps = 2/279 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
           +N    +  Y  ++++L K  + +   +++  M +    L+V  +  +M  Y  V +V  
Sbjct: 262 ENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNN 321

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A   F  M + GVT ++  ++ +++ LCK K V +A  +F+ +  +  +PD+ TY+ L++
Sbjct: 322 AKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLID 381

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
              K   +    ++F EM+D G  PD++TY  ++D LCK G +D A+ +   M     RP
Sbjct: 382 CLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRP 441

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             + +++L+       R+++A++ F ++   G   +V  Y  +I   CK         + 
Sbjct: 442 NVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQ 501

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
             M   G   ++ T  I++     + E D+A ++ R MI
Sbjct: 502 SRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMI 540



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARV 144
           +   Q      V  Y  MI  L KI++     +L   +  K M+ +  T+  ++    + 
Sbjct: 327 YTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKS 386

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTY 203
            ++      F+ M   G   ++  +N L+ ALCK+ ++ +A  +F+ MKD+ I P+  T+
Sbjct: 387 GRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTF 446

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +ILL+G  K   L  A E F++++  G   ++ TY +M++ LCK G +DEAL +   M+ 
Sbjct: 447 TILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMED 506

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
             C   +  + +++  +  ++  + A     EM   G+L
Sbjct: 507 NGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGLL 545



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 1/238 (0%)

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M      P    +  ++  L    R   A+ + K M+ +   P  F  +++++ +  
Sbjct: 46  FNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCH 105

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++  A     ++ K G   +    N L+   C   K K   R    + ++G   +  +
Sbjct: 106 FGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGIS 165

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
             I++NG+   GET  A R+ RR+ +     +   Y+M+I   C+   +++A+ ++  M 
Sbjct: 166 YGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMV 225

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            K   P + T+S+L++G C  G ++ +  LL +M+ + I P   T+  L   L KEG+
Sbjct: 226 GKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK 283


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 214/469 (45%), Gaps = 57/469 (12%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY----------------HSMI 104
           ++P     VL +      LA  FF+WA+ +  ++H+  AY                ++++
Sbjct: 96  LAPIWASRVLVELCQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVL 155

Query: 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII----------------------MRKY- 141
           + L  +R+    WD+ + +   R + V  F +                       MRK+ 
Sbjct: 156 KELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFR 215

Query: 142 ------------ARVQKVEEAVYT---FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
                        R+ KV     +   F  M   G+ +++  +N ++  LCK  ++  A+
Sbjct: 216 VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 275

Query: 187 EIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
            +F  MK+  F PD  TY+ L++G GK   L     IF +M D  C+PD++TY  +++  
Sbjct: 276 SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCF 335

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK  R+ +A   +  M +   +P    YS  +  +  E  +++A+  F++M +  +  + 
Sbjct: 336 CKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNE 395

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y +LI A CKA       ++++++   G+  N  T   +L+GL   G   EA  VFR 
Sbjct: 396 FTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRA 455

Query: 366 MIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+    A + +TYT ++  F +  E+E A  + K MK K   P +  +  ++ GLC++  
Sbjct: 456 MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESR 515

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQEKMNL 472
           + ++ +L+ ++ E GI  +   +  L     K G+  + L  L+E ++L
Sbjct: 516 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDL 564



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 180/387 (46%), Gaps = 9/387 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K+  +   +  Y+S+I+   K+        +   M+      +V T+  ++  + + +++
Sbjct: 282 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERM 341

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSIL 206
            +A    + M+  G+  N+  ++  + A CK   +++A + F D  +    P+  TY+ L
Sbjct: 342 PKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSL 401

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++   K  NL  A ++  E++  G   ++VTY  ++D LC+ GR+ EA  + ++M +   
Sbjct: 402 IDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGV 461

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ LVH +     +E A D   EM++  I  D+ +Y  ++   C  ++ +    
Sbjct: 462 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 521

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           ++ ++   G+  N+     +++     G+  EA  +   M+ L   A   TY  +I   C
Sbjct: 522 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLC 581

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G +++A   +  M      P++  ++ L++GLC       +  L ++M++KG+ P   
Sbjct: 582 KSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKI 641

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNL 472
            +  L    +K G       LQE +NL
Sbjct: 642 AYTALIDGNMKHGN------LQEALNL 662



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 185/409 (45%), Gaps = 14/409 (3%)

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRA---------YHSMIESLAK--IRQYQIMWDLVNAM 123
           NA    FC F+   K   + H ++A         Y + I++  K  + Q  I +  V+  
Sbjct: 329 NALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKF-FVDMR 387

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           R     N  T+  ++    +   + EA+     + + G+  N+  +  LL  LC+   ++
Sbjct: 388 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 447

Query: 184 KAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +A+E+F  M +  + P+ +TY+ L+ G+ K   +  A++I +EM +    PD++ YG ++
Sbjct: 448 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 507

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
             LC   R++EA  ++  +  +     + IY+ L+  Y    +  +A+    EM   G++
Sbjct: 508 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLI 567

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
           A    Y ALI   CK+   +        M+  G+ PN      +++GL      + A ++
Sbjct: 568 ATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKL 627

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  M+ K    D   YT +I    + G L++A  +   M        +H ++ LI GL  
Sbjct: 628 FDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSH 687

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            G V  +  LL++MI KG+ P    +  L K     G+ D    LQ +M
Sbjct: 688 SGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 736



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 2/314 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           LNV T+  ++       +++EA   F  M   GV  N   +  L+    K+K +  A++I
Sbjct: 428 LNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDI 487

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              MK++ I PD   Y  +L G   +  L  A+ +  E+ ++G N + V Y  ++D   K
Sbjct: 488 LKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFK 547

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +G+  EAL +++ M       T   Y  L+        +++A+  F  M + G+  +VA+
Sbjct: 548 SGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAV 607

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y AL+   CK N F+   ++  +M  KG+ P+      +++G +  G   EA  +  RMI
Sbjct: 608 YTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMI 667

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           ++  E D   YT +I      G+++KA  +   M  K  +P    +  LI      G V 
Sbjct: 668 EIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVD 727

Query: 427 DSCVLLEDMIEKGI 440
           ++  L  +M ++G+
Sbjct: 728 EALELQNEMAKRGM 741


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 199/431 (46%), Gaps = 19/431 (4%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           SS+P+        S   ++L  P   L   + Q GI  SPE    VL +      +   F
Sbjct: 204 SSDPA--------SFDLLLLCLPSAPLLRRVRQYGISPSPEACNAVLSRLPLDEAIEL-F 254

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143
               +K      +V +Y+ +++ L    + +    L + M +    +V T+ I++  Y  
Sbjct: 255 QGLPDK------NVCSYNILLKVLCGAGRVEDARQLFDEMASPP--DVVTYGILIHGYCA 306

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKT 202
           + ++E AV   + M   GV  N   +  +++ LC    V  A  +  D +  + I D   
Sbjct: 307 LGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAV 366

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ +L G+    +L  AR  F EM   G   D VTY  +++ LC+AG + EA  +++ M 
Sbjct: 367 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEML 426

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           +         Y+VLV  Y    ++ +A      M + G+  +V  Y AL    CK    +
Sbjct: 427 ARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQ 486

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
               +L +M++KG+  N+ T N ++NGL   G  D+A R    M     + D  TYT +I
Sbjct: 487 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLI 546

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+ GEL++A  + + M      P++ T++VL+NG C  G V     LLE M+EK I 
Sbjct: 547 DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH 606

Query: 442 PSGETFGKLRK 452
           P+  T+  L K
Sbjct: 607 PNATTYNSLMK 617



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 175/345 (50%), Gaps = 5/345 (1%)

Query: 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           ++ D+V+    K +L+   +  ++  +     +  A   F+ MQ+ G+  +   +  L++
Sbjct: 351 VVEDMVHH---KVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLIN 407

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
            LC++  +++A+++   M  R +  D  TY++L++G+ K   +  A ++   MV  G  P
Sbjct: 408 GLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAP 467

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           ++VTY  + D LCK G V  A  ++  M +      +  Y+ L++       ++ A+ T 
Sbjct: 468 NVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTM 527

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M+  G+  DV  Y  LI A CK+ +    + +L++M   G+ P   T N+++NG    
Sbjct: 528 ADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMS 587

Query: 354 GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G  +   ++   M+ K    +A TY  ++K +C G  ++   +++K M  +   P+ +T+
Sbjct: 588 GRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTY 647

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           ++LI G C    + ++     +MIEKG R +  ++  L +LL K+
Sbjct: 648 NILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKK 692



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 161/306 (52%), Gaps = 11/306 (3%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           +++YG++ +  A N +LS L     + +A E+F  + D+ +    +Y+ILL+       +
Sbjct: 226 VRQYGISPSPEACNAVLSRL----PLDEAIELFQGLPDKNV---CSYNILLKVLCGAGRV 278

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             AR++F EM      PD+VTYGI++   C  G ++ A+ ++  M +    P + +Y+ +
Sbjct: 279 EDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSV 335

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V     + R+ DA+    +M  + ++ D A+Y  ++  FC      +  R   +M  KG+
Sbjct: 336 VALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGL 395

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           A +  T   ++NGL   GE  EA +V + M+ +  + D  TYT+++  +C+ G++ +AF+
Sbjct: 396 ATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQ 455

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V   M  +   P++ T++ L +GLC +G V  +  LL +M  KG+  +  T+  L   L 
Sbjct: 456 VHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLC 515

Query: 456 KEGRED 461
           K G  D
Sbjct: 516 KAGYLD 521



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 167/360 (46%), Gaps = 42/360 (11%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
           ++EA+  F  +      +N+ ++N LL  LC +  V  A+++FD M     PD  TY IL
Sbjct: 247 LDEAIELFQGLPD----KNVCSYNILLKVLCGAGRVEDARQLFDEMASP--PDVVTYGIL 300

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+     L  A ++  +MV  G  P+   Y  +V +LC  GRV +AL +V+ M     
Sbjct: 301 IHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKV 360

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                +Y+ ++  +  +  +  A   F EM++ G+  D   Y  LI   C+A + K   +
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEK 420

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LC 370
           VL++M ++ +  +  T  ++++G   RG+  EA++V   M++                LC
Sbjct: 421 VLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLC 480

Query: 371 --------------------EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                               E +A TY  +I   C+ G L++A +    M      P ++
Sbjct: 481 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVY 540

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T++ LI+ LC  G +  +  LL++M++ GI+P+  T+  L       GR +  K L E M
Sbjct: 541 TYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWM 600



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 17/399 (4%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA--YHSMI 104
           KV+LD A           +   VL  F N G L     +W ++ Q    +     Y ++I
Sbjct: 359 KVILDEA-----------VYTTVLSGFCNKGDLVSAR-RWFDEMQRKGLATDGVTYTTLI 406

Query: 105 ESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
             L +  + +    ++  M  +R+ ++  T+ +++  Y +  K+ EA    N M + GV 
Sbjct: 407 NGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVA 466

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREI 222
            N+  +  L   LCK  +V+ A E+   M ++ +  ++ TY+ L+ G  K   L +A   
Sbjct: 467 PNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRT 526

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
             +M   G  PD+ TY  ++D LCK+G +D A  +++ M     +PT   Y+VL++ + +
Sbjct: 527 MADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             R+E        M +  I  +   YN+L+  +C  N  K+   + K M S+ V PN  T
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646

Query: 343 CNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            NI++ G        EA      MI K     A +Y+ +I++  +  +  +A K++  M+
Sbjct: 647 YNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMR 706

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            + F      ++  I+   ++  +  +  L ++++E  I
Sbjct: 707 KEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASI 745


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 167/328 (50%), Gaps = 2/328 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F ++MR   R+ ++  A   F+ MQ  GV + + +FN ++S +C++ ++  A+ +   M 
Sbjct: 243 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 302

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +  + PD  TY  L++G  +   +  AR +F +M   G  P+ V + I++D  CK G  +
Sbjct: 303 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 362

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
             L + + M     RP +  Y+ +V+       ++ A    +EM   G+  D   Y  LI
Sbjct: 363 TMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLI 422

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +CK  +      + ++M ++GV  +  T   +++GL   G + +A RV   M++   E
Sbjct: 423 DGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLE 482

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYTM+I  FC+ G+++   ++ K M+ K   P + T++V++NG C  G + ++ +L
Sbjct: 483 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADML 542

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L  MI  G+ P   T+  L     K G+
Sbjct: 543 LNAMINIGVSPDDITYNILLDGHCKHGK 570



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 177/375 (47%), Gaps = 5/375 (1%)

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           + GIR+ P     ++ +F  A     C F             + ++ ++  L ++ +   
Sbjct: 201 RRGIRLEPTSCTGLMSRFPTAPE--ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELAS 258

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
             ++ + M+++ +   V +F  ++    R   ++ A      M + GVT ++  +  L+ 
Sbjct: 259 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQ 318

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
            LC+   +  A+ +F+ M  R + P++  ++IL++   K  +     E+ REM + G  P
Sbjct: 319 GLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRP 378

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D VTY  +V+ LC+A  +  A GIV  M S   RP +  Y+ L+  Y  E  ++ A++  
Sbjct: 379 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 438

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M   G+  D   Y ALI    KA +  +  RVL +M   G+ P++ T  ++++    +
Sbjct: 439 QNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 498

Query: 354 GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G+     R+ + M  K  +    TY +++  FC+ G+++ A  +   M      P   T+
Sbjct: 499 GDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 558

Query: 413 SVLINGLCDKGIVSD 427
           ++L++G C  G V+D
Sbjct: 559 NILLDGHCKHGKVTD 573



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 5/295 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  +++   RV ++E+A   F  M   G+  N   F  L+ A CK  +     E+ 
Sbjct: 309 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 368

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M++R + PD+ TY+ ++ G  +  +L  A  I  EM   G  PD VTY  ++D  CK 
Sbjct: 369 REMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKE 428

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +D A+ I ++M +         Y+ L+       R  DA     EM + G+  D   Y
Sbjct: 429 EELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTY 488

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             +I AFC+    K   R+LK+M +KG  P   T N+I+NG    G+   A  +   MI 
Sbjct: 489 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMIN 548

Query: 369 LCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           +  +  D TY +++   C+ G   K   + +    K  +P +  ++ ++  +  K
Sbjct: 549 IGVSPDDITYNILLDGHCKHG---KVTDIEELKSAKGTVPDLGVYTSIVGEIVKK 600



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 97/204 (47%), Gaps = 1/204 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P + +++VL+        +  A + F EM+  G+   V  +N +I   C+A        +
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + M+  GV P+  T   ++ GL   G  ++A  VF +M  +  + +A  +T++I   C+
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 357

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+ E   ++ + M+ +   P   T++ ++NGLC    +  +  ++ +M   G+RP   T
Sbjct: 358 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 417

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  L     KE   D+   +++ M
Sbjct: 418 YTTLIDGYCKEEELDMAMEIKQNM 441



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y  E  + DA    L   + GI  +      L+  F  A +    Y  L D    G+ P 
Sbjct: 183 YAEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLD---AGLPPE 239

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           ++  N+++  L+  GE   A  VF  M  +       ++  MI   C+ G+L+ A  + +
Sbjct: 240 AKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHR 299

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M      P ++T+  LI GLC  G + D+  + E M  +G++P+   F  L     K+G
Sbjct: 300 RMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKG 359

Query: 459 REDVLKFLQEKM 470
             + +  L  +M
Sbjct: 360 DAETMLELHREM 371


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 167/328 (50%), Gaps = 2/328 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F ++MR   R+ ++  A   F+ MQ  GV + + +FN ++S +C++ ++  A+ +   M 
Sbjct: 119 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 178

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +  + PD  TY  L++G  +   +  AR +F +M   G  P+ V + I++D  CK G  +
Sbjct: 179 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 238

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
             L + + M     RP +  Y+ +V+       ++ A    +EM   G+  D   Y  LI
Sbjct: 239 TMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLI 298

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +CK  +      + ++M ++GV  +  T   +++GL   G + +A RV   M++   E
Sbjct: 299 DGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLE 358

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYTM+I  FC+ G+++   ++ K M+ K   P + T++V++NG C  G + ++ +L
Sbjct: 359 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADML 418

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L  MI  G+ P   T+  L     K G+
Sbjct: 419 LNAMINIGVSPDDITYNILLDGHCKHGK 446



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 5/295 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  +++   RV ++E+A   F  M   G+  N   F  L+ A CK  +     E+ 
Sbjct: 185 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 244

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M++R + PD+ TY+ ++ G  +  +L  A  I  EM   G  PD VTY  ++D  CK 
Sbjct: 245 REMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKE 304

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +D A+ I ++M +         Y+ L+       R  DA     EM + G+  D   Y
Sbjct: 305 EELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTY 364

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             +I AFC+    K   R+LK+M +KG  P   T N+I+NG    G+   A  +   MI 
Sbjct: 365 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMIN 424

Query: 369 LCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           +  +  D TY +++   C+ G   K   + +    K  +P +  ++ ++  +  K
Sbjct: 425 IGVSPDDITYNILLDGHCKHG---KVTDIEELKSAKGTVPDLGVYTSIVGEIVKK 476



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 97/204 (47%), Gaps = 1/204 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P + +++VL+        +  A + F EM+  G+   V  +N +I   C+A        +
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + M+  GV P+  T   ++ GL   G  ++A  VF +M  +  + +A  +T++I   C+
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 233

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+ E   ++ + M+ +   P   T++ ++NGLC    +  +  ++ +M   G+RP   T
Sbjct: 234 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 293

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  L     KE   D+   +++ M
Sbjct: 294 YTTLIDGYCKEEELDMAMEIKQNM 317



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y  E  + DA    L   + GI  +      L+  F  A +    Y  L D    G+ P 
Sbjct: 59  YAEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLD---AGLPPE 115

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           ++  N+++  L+  GE   A  VF  M  +       ++  MI   C+ G+L+ A  + +
Sbjct: 116 AKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHR 175

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M      P ++T+  LI GLC  G + D+  + E M  +G++P+   F  L     K+G
Sbjct: 176 RMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKG 235

Query: 459 REDVLKFLQEKM 470
             + +  L  +M
Sbjct: 236 DAETMLELHREM 247


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 225/468 (48%), Gaps = 45/468 (9%)

Query: 28  STEALDAAKSISKIM-----LSSPKVVLDTALDQSGIRVSPEIVEDVLE--KFRNAGTLA 80
           S++ LD +  +++I+      S+ +  LD+   +  +++SP  V  VL+  + R    +A
Sbjct: 72  SSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFVLQSVELREKPEVA 131

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMR 139
             FF WA KQ+ Y H +  + S+IE L        +  +   ++ + +L  E+    +++
Sbjct: 132 VRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIK 191

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIP 198
            +  +  VEE ++ +  M++ G+  +L  +N L++ L  S  +  A+++F+ M   + +P
Sbjct: 192 SFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVP 251

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT--------------------- 237
           D+ TY+I+++G+ K   L +A E FR+M      PD +T                     
Sbjct: 252 DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLY 311

Query: 238 --------------YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
                         Y +++  LCK  +  EA  + ++M+   CR    IY+ L+ +Y   
Sbjct: 312 LEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKN 371

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
             +E+A+  F  M+  G   D   Y+ L+   CK+ +  +   +     +KGVA N+   
Sbjct: 372 GSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFY 431

Query: 344 NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             +++GL   G  ++A  +F  M  K C  D+  Y  +I    + G++++A  ++  M+ 
Sbjct: 432 ASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEE 491

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +    +++TF++LI+GL  +    ++    + MI+KGI P+  +F  L
Sbjct: 492 EGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRAL 539



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 208/465 (44%), Gaps = 53/465 (11%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAK--- 109
           L   G+ ++      +++ F N G +    + W   ++N  + S+  Y+ ++  L     
Sbjct: 174 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 233

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF------NV------- 156
           I   + ++++++    K + +  T+ I+++ Y +  K+++A+  F      NV       
Sbjct: 234 IESAEKVFEVMDG--GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITY 291

Query: 157 ----------------------MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
                                 M++ G+     +++ ++  LCK +   +A  +F+ M  
Sbjct: 292 MTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQ 351

Query: 195 RFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +    +   Y+ L++ + K+ ++  A  +F  M + G  PD VTY ++V+ LCK+GR+D+
Sbjct: 352 KGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDD 411

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
            + +     +      +  Y+ L+   G   RIEDA + F EM + G   D   YNA+I 
Sbjct: 412 GMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIID 471

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEA 372
           A  K  K      +   M  +G      T  I+++GL    + +EA + + +MI K    
Sbjct: 472 ALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITP 531

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
              ++  +    C  G++ +A K+   +     IP    F  +IN LC    + ++C L 
Sbjct: 532 TVASFRALAIGLCLCGKVARACKILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLA 590

Query: 433 EDMIEKGIRPSGETFGKLRKLLI----KEGRED-VLKFLQEKMNL 472
           + ++++G     E  G++R +LI    K G  D V+K +  K+ +
Sbjct: 591 DGIVDRG----REIPGRIRTVLINALRKAGNSDLVIKLMHSKIGI 631


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 185/359 (51%), Gaps = 9/359 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I    K  Q    ++L++ M+ + + ++V     +++   R  +++EA+  F  M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------PDSKTYSILLEGWGK 212
           +   + N+  +N +++ LCK+  + +  E+FD M+ R+       PD  +YS +++   K
Sbjct: 62  EE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              + +A E F+ M   GC P++VTY  ++D LCK  RVDEA  ++  +      P +  
Sbjct: 121 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMY 180

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ +V+ +  + +  + ++  L M++ G   ++  +NA++ A  K ++ +   +  + + 
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLL 240

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
             G  PN  T N+ ++GL   G+ DEAYR+   M++     D  TY+ +I  FC+ G ++
Sbjct: 241 KSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMD 300

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           KA  V+  M +   IP   TF  L++G  +     ++  + EDM+  G  P  +T+  L
Sbjct: 301 KADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 359



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 186/408 (45%), Gaps = 22/408 (5%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYAR 143
           K  E     E  V +Y ++I++L K ++    ++    MR      NV T+  ++    +
Sbjct: 96  KRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCK 155

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKT 202
           V +V+EA      ++   +      +N +++   +     +  E+   MK++ F  +   
Sbjct: 156 VDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIID 215

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           ++ +L    K+    +A + F  ++ +G  P++VTY + V  LCKAG+VDEA  I+  M 
Sbjct: 216 FNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMV 275

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
            +   P    YS ++  +    R++ A D F  M  +  +     +  L+  F +  K +
Sbjct: 276 ESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSR 335

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
             +RV +DM + G  P  +T N++++ + G    + A  ++ +M  K  + DA+TY  +I
Sbjct: 336 EAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLI 395

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE---- 437
           +  C+   +++A +    M+    +P+      L+  LC +G V ++C +L++++E    
Sbjct: 396 QCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKA 455

Query: 438 ---------------KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
                          KG+RP   T+  + + L    R D      EKM
Sbjct: 456 GEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKM 503



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 176/425 (41%), Gaps = 65/425 (15%)

Query: 80  AFCFFKWAEKQQNYEHSVRA---------YHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
           A C  +  +K   Y   +RA         Y S+I+ L K+ +    + L+  ++ + M+ 
Sbjct: 117 ALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVP 176

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
               +  ++  + R  K  E +     M++ G   N+  FN +L AL K+    KA + F
Sbjct: 177 RAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFF 236

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  +K    P+  TY++ + G  K   +  A  I  EMV++   PD++TY  ++D  CKA
Sbjct: 237 ERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKA 296

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVH----------------------------TY 280
           GR+D+A  +   M    C P    +  L+H                            TY
Sbjct: 297 GRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTY 356

Query: 281 GV-------ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            V        + +E A++ + +M++     D   Y  LI   C+A +       L  M +
Sbjct: 357 NVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEA 416

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
             V PN   C+ ++  L  +GE DEA  V   ++++C+A               GE ++A
Sbjct: 417 DNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKA---------------GEPDEA 461

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +V + M LK   P   T+  ++  LC    V  +    E M  +G  P   T+     L
Sbjct: 462 VEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTY----TL 517

Query: 454 LIKEG 458
           LI E 
Sbjct: 518 LIGEA 522



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 165/378 (43%), Gaps = 23/378 (6%)

Query: 69  VLEKFRNAGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN-AMRTK 126
           V+  F+  G  + C       K++ +  ++  +++M+ +L K  + +         +++ 
Sbjct: 184 VVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 243

Query: 127 RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +  NV T+ + +    +  KV+EA      M +  VT ++  ++ ++   CK+  + KA 
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 187 EIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           ++F   M    IP   T+  LL G+ +      A  +  +MV+ G  P + TY +++D +
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C A  V+ AL I   M     +P +  Y+ L+       R+++A +    ME + ++ + 
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 306 AMYNALIGAFCK-------------------ANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           A+ +AL+   CK                   A +      V++ M  KGV P+  T   +
Sbjct: 424 AICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAV 483

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           L  L G    D A   F +M  + C     TYT++I   C     + AF++++ M    F
Sbjct: 484 LRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGF 543

Query: 406 IPSMHTFSVLINGLCDKG 423
            P   T   L + L D G
Sbjct: 544 TPQAQTMRTLSSCLRDAG 561



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 117/282 (41%), Gaps = 21/282 (7%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y S+I+   K  +     D+   M     + +  TF  ++  ++  +K  EA     
Sbjct: 283 VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHE 342

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            M   G    L  +N L+  +C + +V  A EI+  MK  +  PD+ TY+ L++   +  
Sbjct: 343 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRAR 402

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------------------AGRVDEAL 255
            +  A+E    M      P+      +V+VLCK                   AG  DEA+
Sbjct: 403 RVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAV 462

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M     RP    Y  ++ +    +R++ A+  F +M   G    +  Y  LIG  
Sbjct: 463 EVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEA 522

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           C A+   + +R+ + M + G  P ++T   + + L   G  D
Sbjct: 523 CSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQD 564



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           +Y+ +++ +    +++ A +   EM++ G+  DV +++ LI   C+  +        K M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------CEADADTYTMMIKMFC 385
             +  +PN  T N ++NGL      DE   +F  M K       CE D  +Y+ +I   C
Sbjct: 61  GEE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL-----EDMIEKGI 440
           +   ++KA++ +K M+     P++ T+S LI+GLC    V ++  LL     EDM+ + +
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 177/366 (48%), Gaps = 20/366 (5%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           +   MR   + +V TF  +++      ++ EA   F  MQK G T N+  +  L+  LC 
Sbjct: 149 MAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCA 208

Query: 179 SKNVRKA----QE--------IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
             N+  A    QE        +F+C      P+  +YSI+++G  K  N   A  +F EM
Sbjct: 209 LGNINIALKWHQEMLNDTSPYVFNCR-----PNVISYSIIIDGLCKVGNWEEAICLFNEM 263

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           VD G  P++VT+ +++D+LCK G+V +A  +++ M      P  F Y+ L+  + +   +
Sbjct: 264 VDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDL 323

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
             A + F+ M   G   DV  YN LI  +CK  K +   ++  +M   G+ P+ +T  ++
Sbjct: 324 NSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVL 383

Query: 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM--FCQGGELEKAFKVWKYMKLKR 404
           L  L   G+ D+A  +F R+IK      D     I +   C+ G + +A K++  ++   
Sbjct: 384 LKALFLAGKVDDAKELF-RVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYN 442

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
               + TF  LI+GLC  G +  +  L E + E+GI+P    +  +     K+G+ D   
Sbjct: 443 MKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKAN 502

Query: 465 FLQEKM 470
            L +KM
Sbjct: 503 ILFQKM 508



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 171/341 (50%), Gaps = 3/341 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV ++ II+    +V   EEA+  FN M   GV  N+  F+ L+  LCK   V KA+++ 
Sbjct: 236 NVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLL 295

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M +   +P+  TY+ L++G+    +L  A+E+F  M   G  PD+++Y ++++  CK 
Sbjct: 296 EMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKT 355

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +V+EA+ +   M      P      VL+    +  +++DA + F  ++   +  D+ + 
Sbjct: 356 LKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCIC 415

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
              +   CK        ++  ++ S  +  +  T   +++GL   G+ + A+ +F ++ +
Sbjct: 416 CIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYE 475

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              + DA  Y+ MI  FC+ G+++KA  +++ M+     P + T+S+L+ G  +   +  
Sbjct: 476 EGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEK 535

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQ 467
              LL  MIEK + P    +  +  ++ K E  ++ L  LQ
Sbjct: 536 VVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQ 576



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 48/329 (14%)

Query: 177 CK--SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           CK  S +V +A + FD M         +++ LL G  K  +  +   ++++M   G  PD
Sbjct: 70  CKTGSISVTQAHQFFDLMMRSIF----SFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPD 125

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++T  I+++ LC   R++E L  +  +      P    ++ L+    VE+RI +A   F+
Sbjct: 126 LLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFM 185

Query: 295 EMEKNGILADVAMYNAL-----------------------------------------IG 313
            M+K G   +V  Y  L                                         I 
Sbjct: 186 RMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIID 245

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
             CK   ++    +  +M  +GV PN  T +++++ L   G+  +A ++   MI++    
Sbjct: 246 GLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVP 305

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  TYT +IK FC  G+L  A +++  M  K + P + ++++LING C    V ++  L 
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLF 365

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +M+  G+ P  +T G L K L   G+ D
Sbjct: 366 NEMLHVGMWPDVKTSGVLLKALFLAGKVD 394



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 162/357 (45%), Gaps = 43/357 (12%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N   +V +Y  +I+ L K+  ++    L N M  + +  NV TF +++    +  +V +A
Sbjct: 232 NCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKA 291

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
                +M + G+  NL  +  L+   C   ++  A+E+F  M  + + PD  +Y++L+ G
Sbjct: 292 KKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLING 351

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK-----SMDST 264
           + K   +  A ++F EM+  G  PD+ T G+++  L  AG+VD+A  + +     +M   
Sbjct: 352 YCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKD 411

Query: 265 VCR---------PTSFIYSVL--------------VHTYGV-------ENRIEDAVDTFL 294
           +C             +I+  +              + T+G          ++E A + F 
Sbjct: 412 LCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFE 471

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           ++ + GI  D   Y+++I  FCK  +      + + M   G +P+  T +I++ G     
Sbjct: 472 KLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESN 531

Query: 355 ETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           + ++  ++  RMI K    D   Y ++  M C+    ++ +K W  + L+RF    H
Sbjct: 532 KLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCK----DEKYKEWLDL-LQRFFVQKH 583



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           + YE  V +Y+ +I    K  + +    L N M    M  +V+T  ++++      KV++
Sbjct: 336 KGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDD 395

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLE 208
           A   F V++ Y + ++L      L  LCK+  + +A ++F+ ++   +  D +T+  L++
Sbjct: 396 AKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLID 455

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   L  A E+F ++ + G  PD + Y  M+   CK G+VD+A  + + M+   C P
Sbjct: 456 GLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSP 515

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               YS+L+  +   N++E  V     M +  +  D  +Y  +    CK  K+K    +L
Sbjct: 516 DLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 575

Query: 329 K 329
           +
Sbjct: 576 Q 576


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 156/298 (52%), Gaps = 2/298 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           MQ  G+  N   +NG++  LCK+  V +A+ +  + + +   PD   Y+ L++G+ K  N
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +F EM     +PD +TY  ++  LC+ GRV EA  +   M      P    Y+ 
Sbjct: 274 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y  E ++++A     +M + G+  ++  Y AL    CK  +      +L +M  KG
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 393

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
           +  N  T N ++NGL   G  D+A ++ + M +     DA TYT ++  +C+  E+ +A 
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 453

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           ++ + M  +   P++ TF+VL+NG C  G++ D   LL+ M+EKGI P+  T+  L K
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 511



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 157/321 (48%), Gaps = 2/321 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           +  ++  + ++  V  A   F+ MQK  ++ +   +  ++  LC++  V +A ++F  M 
Sbjct: 261 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 320

Query: 194 -DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
             R  PD  TY+ L++G+ K+  +  A  +  +M+  G  P+IVTY  + D LCK G VD
Sbjct: 321 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD 380

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  ++  M         + Y+ LV+       I+ AV    +ME  G   D   Y  L+
Sbjct: 381 TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 440

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
            A+CK+ +    + +L+ M  + + P   T N+++NG    G  ++  ++ + M+ K   
Sbjct: 441 DAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM 500

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +A TY  +IK +C    +    ++++ M  K  +P  +T+++LI G C    + ++  L
Sbjct: 501 PNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFL 560

Query: 432 LEDMIEKGIRPSGETFGKLRK 452
             DM+ KG   +  ++  L K
Sbjct: 561 HRDMVGKGFNLTVSSYNALIK 581



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 155/337 (45%), Gaps = 3/337 (0%)

Query: 119 LVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           L+  M+ K +  N  T+  ++    +  KV EA      M   G+  +   +  L+   C
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 269

Query: 178 KSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K  NV  A  +FD M+ R I PD  TY+ ++ G  +   +  A ++F EMV     PD V
Sbjct: 270 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEV 329

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  ++D  CK G++ EA  +   M      P    Y+ L         ++ A +   EM
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 389

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + G+  ++  YN+L+   CKA       +++KDM   G  P++ T   +++      E 
Sbjct: 390 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 449

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             A+ + R+M+ +  +    T+ +++  FC  G LE   K+ K+M  K  +P+  T++ L
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           I   C +  +  +  +   M  KG+ P G T+  L K
Sbjct: 510 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIK 546



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 159/323 (49%), Gaps = 3/323 (0%)

Query: 119 LVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           L + M  KR+   E T+  ++  Y +  K++EA    N M + G+T N+  +  L   LC
Sbjct: 315 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 374

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K   V  A E+   M  + +  +  TY+ L+ G  K  N+ +A ++ ++M   G +PD V
Sbjct: 375 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 434

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  ++D  CK+  +  A  +++ M     +PT   ++VL++ + +   +ED       M
Sbjct: 435 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 494

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + GI+ +   YN+LI  +C  N  +    + + M +KGV P+  T NI++ G       
Sbjct: 495 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 554

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA+ + R M+ K       +Y  +IK F +  +  +A ++++ M+ +  +     +++ 
Sbjct: 555 KEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614

Query: 416 INGLCDKGIVSDSCVLLEDMIEK 438
            +   D+G +  +  L ++ IEK
Sbjct: 615 ADINYDEGKMELTLELCDEAIEK 637



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 1/231 (0%)

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++  EM   G  P+  TY  ++ +LCK G+V EA  +++ M S    P   IY+ L+  +
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                +  A   F EM+K  I  D   Y A+I   C+  +     ++  +M  K + P+ 
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T   +++G    G+  EA+ +  +M+++    +  TYT +    C+ GE++ A ++   
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           M  K    +++T++ L+NGLC  G +  +  L++DM   G  P   T+  L
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL 439



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 130/275 (47%), Gaps = 12/275 (4%)

Query: 199 DSKTYSILLEGWGKDPNL----PRAREIFREMVDTG-------CNPDIVTYGIMVDVLCK 247
           D K    L++ +  +PNL      AR++F +M++ G       CN  I      +D +  
Sbjct: 141 DLKMARKLIQDFWVNPNLDVGVSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKI 200

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           A + +  L +++ M     +P  + Y+ ++       ++ +A     EM   GI  D  +
Sbjct: 201 ALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVI 260

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI  FCK     + YR+  +M  + ++P+  T   ++ GL   G   EA ++F  M+
Sbjct: 261 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 320

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K  E D  TYT +I  +C+ G++++AF +   M      P++ T++ L +GLC  G V 
Sbjct: 321 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD 380

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +  LL +M  KG+  +  T+  L   L K G  D
Sbjct: 381 TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNID 415



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I+   K  + +  + L N M    +  N+ T+  +     +  +V+ A    + M
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 389

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGKD 213
            + G+  N+  +N L++ LCK+ N+ +A ++   MKD     F PD+ TY+ L++ + K 
Sbjct: 390 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKL---MKDMEVAGFHPDAVTYTTLMDAYCKS 446

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + RA E+ R+M+D    P +VT+ ++++  C +G +++   ++K M      P +  Y
Sbjct: 447 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 506

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILAD----------------------------- 304
           + L+  Y + N +    + +  M   G++ D                             
Sbjct: 507 NSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVG 566

Query: 305 ------VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
                 V+ YNALI  F K  KF     + + M  +G+  +    NI
Sbjct: 567 KGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNI 613


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 218/446 (48%), Gaps = 45/446 (10%)

Query: 57  SGIRVSPEIVED--VLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           SG   +  I+ D  VL    N+ T L    FK A   + Y+ SV + + ++ +L K  ++
Sbjct: 153 SGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYR-YKLSVLSCNPLLSALVKENEF 211

Query: 114 QIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
             +  +   M R K   N+ TF  ++    +V K+ +A    + M+ +G   N+  +N L
Sbjct: 212 GGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTL 271

Query: 173 LSALCKSKNV---RKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           +   CK   V    KA  I   M +++  P+S T+++L++G+ KD NL  A ++F EM  
Sbjct: 272 IDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQS 331

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G  P +VTY  +V+ LC  G+++EA  ++  M S+  +P    Y+ L++ Y  +  +E+
Sbjct: 332 QGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEE 391

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A + F  + K G+  +V  +N L+  +CK  K +  + + K M  KG  PN+ T N ++ 
Sbjct: 392 ARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIV 451

Query: 349 GLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           G    G+ +E   +   M  +  +AD  TY ++I  +C+  E +KA ++   M  K   P
Sbjct: 452 GFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKP 511

Query: 408 SMHTFSVLIN-----------------------------------GLCDKGIVSDSCVLL 432
           S  T+++L+N                                   G C KG + D+  LL
Sbjct: 512 SHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLL 571

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEG 458
            +M+EKG+ P+  T+  +++ ++++G
Sbjct: 572 NEMLEKGLIPNRTTYEIIKEEMMEKG 597



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 171/338 (50%), Gaps = 6/338 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWD----LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +V  Y+++I+   K+ +   M+     L   +  K   N  TF +++  + + + +  A+
Sbjct: 264 NVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAAL 323

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
             F  MQ  G+   +  +N L++ LC    + +A+ + D M      P+  TY+ L+ G+
Sbjct: 324 KVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGY 383

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   L  ARE+F  +   G  P+++T+  ++   CK G+++EA  + K M      P +
Sbjct: 384 CKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNA 443

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+  +  E ++E+  +   EM+  G+ AD   YN LI A+C+  + K   R++ +
Sbjct: 444 STYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDE 503

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGE 389
           M  KG+ P+  T NI+LNG    G    A  + ++M K    A+  TY ++I+ +C+ G+
Sbjct: 504 MLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGK 563

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           LE A  +   M  K  IP+  T+ ++   + +KG + D
Sbjct: 564 LEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPD 601



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 44/196 (22%)

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA--------- 359
           N L+ A  K N+F  V  V K+M  + ++PN  T N ++NGL   G+ ++A         
Sbjct: 199 NPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKV 258

Query: 360 ----------------YRVFRRMIKLCEADAD--------------TYTMMIKMFCQGGE 389
                           Y    R+ K+ +ADA               T+ ++I  FC+   
Sbjct: 259 WGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDEN 318

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           L  A KV++ M+ +   P++ T++ L+NGLC++G ++++ VLL++M+   ++P+  T+  
Sbjct: 319 LSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNA 378

Query: 450 L-----RKLLIKEGRE 460
           L     +K L++E RE
Sbjct: 379 LINGYCKKKLLEEARE 394



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 54/265 (20%)

Query: 32  LDAAKSISKIMLSS---PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
           L+ AK +   MLSS   P V+   AL     +   +++E+  E F N G           
Sbjct: 354 LNEAKVLLDEMLSSNLKPNVITYNALINGYCK--KKLLEEARELFDNIG----------- 400

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
            +Q    +V  +++++    K  + +  + L   M  K  L N  T+  ++  + R  K+
Sbjct: 401 -KQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKM 459

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK------ 201
           EE     N MQ  GV  +   +N L+SA C+ K  +KA  + D M D+ +  S       
Sbjct: 460 EEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNIL 519

Query: 202 ------------------------------TYSILLEGWGKDPNLPRAREIFREMVDTGC 231
                                         TY++L++G+ +   L  A  +  EM++ G 
Sbjct: 520 LNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGL 579

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  TY I+ + + + G + +  G
Sbjct: 580 IPNRTTYEIIKEEMMEKGFLPDIEG 604


>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Vitis vinifera]
          Length = 501

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 183/367 (49%), Gaps = 3/367 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKV 147
           +Q  ++H   +Y +++  LA+ R ++ +  L++ ++   +   ET F  +++ Y + Q  
Sbjct: 114 QQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMP 173

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           E+AV  F  M  +   + L +FN LL+ L ++     A  IFD   K  F  +S +++I+
Sbjct: 174 EKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNII 233

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++GW       +A ++F EM+D    P +VT+  ++  LC  G +D A+G+++ M     
Sbjct: 234 IKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRH 293

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP +  Y++L+       + ++A     +M+  G    +  +  L+    +  +  +   
Sbjct: 294 RPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKT 353

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +L +M  +   P+  T NI++N L   G   EAY+V   M +  CE +A TY MM+  FC
Sbjct: 354 LLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFC 413

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q  + E   KV   M +    P + +F  L+ GL   G +  +C +LE+M ++ +R   E
Sbjct: 414 QVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLE 473

Query: 446 TFGKLRK 452
            +  L K
Sbjct: 474 AWEALVK 480



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 150/306 (49%), Gaps = 2/306 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
           VQ  ++A+  FN  Q+ G   +  +++ L+  L +S+N    + + D +++  I   +T 
Sbjct: 100 VQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETL 159

Query: 204 SI-LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            I L++ +GK     +A E+F+ M    C+  +V++  +++VL +  R  +A+GI     
Sbjct: 160 FIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRST 219

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               R  S  +++++  +  +   + A   F EM    +   V  +N+LIG  C      
Sbjct: 220 KMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLD 279

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
               +L+DM  K   PN+ T  +++ GL   G+  EA ++   M  + C+     + +++
Sbjct: 280 GAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLM 339

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G ++ +  +   MK +RF P + T+++LIN LC +G   ++  +L +M   G  
Sbjct: 340 SDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCE 399

Query: 442 PSGETF 447
           P+  T+
Sbjct: 400 PNAATY 405



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 7/262 (2%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPT 269
           +DP+   A  +F +    G   D  +Y  +V  L ++   +    ++  + +    CR T
Sbjct: 101 QDPD--DALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRET 158

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            FI   L+  YG     E AV+ F  M        +  +N L+    + ++F +   +  
Sbjct: 159 LFI--ALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFD 216

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
                G   NS + NII+ G +G+GE D+A++VF  MI K  +    T+  +I   C  G
Sbjct: 217 RSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKG 276

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +L+ A  + + M  KR  P+  T+++L+ GLC  G   ++  ++ DM  +G +P    FG
Sbjct: 277 DLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFG 336

Query: 449 KLRKLLIKEGREDVLKFLQEKM 470
            L   L + GR D  K L  +M
Sbjct: 337 VLMSDLGRRGRIDDSKTLLLEM 358


>gi|357462023|ref|XP_003601293.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355490341|gb|AES71544.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 317

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           ++ P +       +++K++L S    L   L     + +P +V+++L++  N G  A  F
Sbjct: 27  TTVPESPPPPIDATVAKLVLESDPKTLSQTLSNPTFQWTPLLVDNILKRLWNHGPKALQF 86

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
           FK  ++   Y HS+ ++   ++  A++R+Y   W L+  MR  R+    +TF I+  +YA
Sbjct: 87  FKHLDRHPTYIHSISSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYA 146

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
              K  +AV  F  M ++G  Q+L +FN +L  LCK+K V  A  +F  ++ RF  DS +
Sbjct: 147 TGGKAHKAVKVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLRGRFKCDSVS 206

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+I+  GW      P A ++ +EMV+ G +P +VTY  ++    + G+++EA      M 
Sbjct: 207 YNIMANGWCLIKRTPMALQVLKEMVERGVDPTMVTYNTLLKGYFRCGQLNEAWEFFLEMK 266

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
              C      Y+ +VH +GV   ++ +   F  M K G+   V   + +I
Sbjct: 267 KRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGLFLRVPSSDLVI 316



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 42/223 (18%)

Query: 217 PRAREIFREMVDTGCNP----DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           P+A + F+ +     +P     I ++   VD+  +    + A  ++  M +    PT   
Sbjct: 81  PKALQFFKHL---DRHPTYIHSISSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKT 137

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA-------NKFKNV- 324
           +++L   Y    +   AV  FL M ++G   D+  +N ++   CK        N FK + 
Sbjct: 138 FAILAERYATGGKAHKAVKVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLR 197

Query: 325 --------------------------YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
                                      +VLK+M  +GV P   T N +L G    G+ +E
Sbjct: 198 GRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMVERGVDPTMVTYNTLLKGYFRCGQLNE 257

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           A+  F  M K  CE D  TYT M+  F   GE++++ +V+  M
Sbjct: 258 AWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAM 300



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P  KT++IL E +       +A ++F  M + GC+ D+ ++  ++DVLCK  RV+ A
Sbjct: 130 RLGPTPKTFAILAERYATGGKAHKAVKVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMA 189

Query: 255 ----------------------------------LGIVKSMDSTVCRPTSFIYSVLVHTY 280
                                             L ++K M      PT   Y+ L+  Y
Sbjct: 190 NNLFKTLRGRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMVERGVDPTMVTYNTLLKGY 249

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
               ++ +A + FLEM+K     DV  Y  ++  F  A + K   RV   M  +G+
Sbjct: 250 FRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGL 305



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 259 KSMDSTVCRPTSFIYSVLVHTY--GVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAF 315
           K++  T+  PT     +LV      + N    A+  F  ++++   +  ++ +   +   
Sbjct: 51  KTLSQTLSNPTFQWTPLLVDNILKRLWNHGPKALQFFKHLDRHPTYIHSISSFEHAVDIA 110

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
            +  ++   + ++  M +  + P  +T  I+       G+  +A +VF  M +  C  D 
Sbjct: 111 ARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVFLSMHEHGCHQDL 170

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           +++  ++ + C+   +E A  ++K ++  RF     +++++ NG C       +  +L++
Sbjct: 171 NSFNTILDVLCKTKRVEMANNLFKTLR-GRFKCDSVSYNIMANGWCLIKRTPMALQVLKE 229

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR 459
           M+E+G+ P+  T+  L K   + G+
Sbjct: 230 MVERGVDPTMVTYNTLLKGYFRCGQ 254


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 185/371 (49%), Gaps = 3/371 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVY 152
           + ++  + ++I  L K+ ++    +L + M  +    +  T+  I+    ++ +   A  
Sbjct: 42  QPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAG 101

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
            F  M++ G   N+  ++ L+ +LCK + V +A +IF  MK + I P   TY+ L++G  
Sbjct: 102 LFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLC 161

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A  +  EM      P++VT+ ++VD  CK G+V  A G++K+M      P   
Sbjct: 162 NFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVV 221

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L++ Y +   + +A   F  M   G   DV  Y+ LI  +CKA +     ++  +M
Sbjct: 222 TYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEM 281

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGEL 390
             +G  PN+ + N +++GL   G   EA  +F+ M       +  TY +++  FC+ G L
Sbjct: 282 IHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYL 341

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            KAF++++ M+     P++  +++L+N +C  G + D+  L  ++   G++P+ + +  +
Sbjct: 342 GKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTI 401

Query: 451 RKLLIKEGRED 461
              L KEG  D
Sbjct: 402 INGLCKEGLLD 412



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 162/326 (49%), Gaps = 3/326 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K ++   ++  Y S+I+ L    +++    L+N M +  ++ NV TF +++  + +  KV
Sbjct: 142 KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKV 201

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
             A      M + GV  ++  +N L+        V +A+++FD M  +   PD  +YSIL
Sbjct: 202 LAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSIL 261

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A+++F EM+  G  P+ V+Y  ++  LC+ GR+ EA  + K+M +   
Sbjct: 262 INGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGN 321

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  + Y++L+  +  +  +  A   F  M+   +  ++ MYN L+ A CK+   K+   
Sbjct: 322 LPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARE 381

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +  ++   G+ PN +    I+NGL   G  DEA   FR M    C  D  +Y ++I+ F 
Sbjct: 382 LFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFL 441

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHT 411
           Q  +  +A  +   M+ + FI    T
Sbjct: 442 QHKDESRAVHLIGEMRDRGFITDAGT 467



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 155/322 (48%), Gaps = 6/322 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M+  G++ N    N L++  C+ + V     +    +K    P   T++ L+ G GK   
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
             +A E+F +MV  GC PD  TY  +++ LCK G    A G+ K M+   C+     YS 
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+H+     R+ +A+D F  M+   I   +  Y +LI   C  +++K    +L +M S  
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + PN  T N++++     G+   A  V + M ++  E D  TY  ++  +    E+ +A 
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K++  M  K   P + ++S+LING C    + ++  L  +MI +G  P+  ++  L   L
Sbjct: 241 KLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGL 300

Query: 455 IKEGR----EDVLKFLQEKMNL 472
            + GR    +D+ K +    NL
Sbjct: 301 CQLGRLREAQDLFKNMHTNGNL 322


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 163/345 (47%), Gaps = 13/345 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  I+    +  +  +A   F  MQ+ G+  +L  +N ++   C S     A+++ 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R I PD  TY+ L+  + K+     A E++ EM+  G  P+ +TY  M+D  CK 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 373

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+D A  +   M +  C P  F ++ L+  Y    RI+D ++   EM + G++A+   Y
Sbjct: 374 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  FC          + + M S GV P+  TCN +L+GL   G+  +A  +F+ M K
Sbjct: 434 NTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 493

Query: 369 L------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
                         E D  TY ++I      G+  +A ++++ M  +  +P   T+S +I
Sbjct: 494 SKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +GLC +  + ++  +   M  K   P+  TF  L     K GR D
Sbjct: 554 DGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 598



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 182/359 (50%), Gaps = 4/359 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTF 137

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+  ++  F  LL  LC    V +A + F  M +    P+  T++ L+ G  ++
Sbjct: 138 GKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCRE 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFI 272
             +  A  +   M++ G  P  +TYG +VD +CK G    AL +++ M+  +   P   I
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS ++ +   + R  DA + F EM++ GI  D+  YN++I  FC + ++ +  ++L++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + ++P+  T N ++N  +  G+  EA  ++  M+ +    +  TY  MI  FC+   L+
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLD 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  ++  M  K   P + TF+ LI+G C    + D   LL +M  +G+  +  T+  L
Sbjct: 378 AAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 436



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 14/344 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  ++ EAV   + M + G+      +  ++  +CK  +   A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    IP+   YS +++   KD     A+ +F EM + G  PD+ TY  M+   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +GR  +A  +++ M      P    Y+ L++ +  E +  +A + + EM   GI+ +   
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTIT 362

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN++I  FCK ++      +   M +KG +P+  T   +++G  G    D+   +   M 
Sbjct: 363 YNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 422

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +    A+  TY  +I  FC  G+L  A  + + M      P + T + L++GLCD G + 
Sbjct: 423 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 482

Query: 427 DSCVLLEDMIEK-----------GIRPSGETFGKLRKLLIKEGR 459
           D+  + + M +            G+ P   T+  L   LI EG+
Sbjct: 483 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGK 526



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 13/276 (4%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  + ++I+     ++     +L++ M R   + N  T+  ++  +  V  +  A+    
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 454

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------PDSKTY 203
            M   GV  ++   N LL  LC +  ++ A E+F  M+   +            PD  TY
Sbjct: 455 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 514

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +IL+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S
Sbjct: 515 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 574

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    ++ L++ Y    R++D ++ F EM + GI+AD  +Y  LI  F K      
Sbjct: 575 KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNING 634

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
              + ++M S GV P++ T   +L G   + E + A
Sbjct: 635 ALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERA 670



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 148/324 (45%), Gaps = 3/324 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-D 199
           +  ++ +E+A+  F+ M +     ++  F  L+  + + +       ++  M+ + I  D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +++IL++ +     LP A   F ++   G +PD+VT+  ++  LC   RV EAL    
Sbjct: 114 IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFH 173

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M  T CRP    ++ L++    E RI +AV     M ++G+      Y  ++   CK  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 320 KFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              +   +L+ M     + PN    + I++ L   G   +A  +F  M  K    D  TY
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             MI  FC  G    A ++ + M  ++  P + T++ LIN    +G   ++  L ++M+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLP 353

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
           +GI P+  T+  +     K+ R D
Sbjct: 354 RGIIPNTITYNSMIDGFCKQDRLD 377



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +M+ +   P +V +  ++ V+ +  R D  + + + M+   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R   + +++L+  +   +++  A+ TF ++ K G+  DV  +  L+   C  ++     
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
                M      PN  T   ++NGL   G   EA  +  RM++   +    TY  ++   
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 385 CQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M ++   IP++  +S +I+ LC  G  SD+  L  +M EKGI P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  D  + LQE +
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEML 317



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 18/244 (7%)

Query: 32  LDAAKSISKIMLSS---PKVV-----LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           L+AA  +S+ M+SS   P +V     LD   D   ++       D LE F+ A   +   
Sbjct: 446 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK-------DALEMFK-AMQKSKMD 497

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
              +      E  V  Y+ +I  L    ++    +L   M  + ++ +  T+  ++    
Sbjct: 498 LDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 557

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           +  +++EA   F  M     + N+  FN L++  CK+  V    E+F  M  R  + D+ 
Sbjct: 558 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 617

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            Y  L+ G+ K  N+  A +IF+EM+ +G  PD +T   M+        ++ A+ +++ +
Sbjct: 618 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677

Query: 262 DSTV 265
             +V
Sbjct: 678 QMSV 681


>gi|413921119|gb|AFW61051.1| hypothetical protein ZEAMMB73_101655 [Zea mays]
          Length = 461

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 209/437 (47%), Gaps = 18/437 (4%)

Query: 35  AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVL---EKFRNAGTLAFCFFKWAEKQQ 91
           A++  +I+   P   ++ AL   GI  + E+ E VL   E ++   + A  FF+WA   Q
Sbjct: 19  AEAFLEIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKS-AVRFFRWA--GQ 75

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVE 148
           +  H+  A++ +++ L K   ++ MWD + +M+ +    +++V TF      Y     ++
Sbjct: 76  SVSHTAYAWNLLVDILGKAAMFESMWDAIRSMKQEGGSGLVSVATFA----SYCTAGNIK 131

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILL 207
           +A+   +VM +YG+  +  A N LLSA+C+ +  V+ AQ++F+  K    PD  T++ILL
Sbjct: 132 DAIAALDVMDRYGLKHDAVALNSLLSAICRVEGRVQDAQDVFERTKATIPPDGDTFAILL 191

Query: 208 EGWGKDPNLPRAREIFREM-VDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           E W K+ N  RA+ +F EM V  G +  ++  Y   +  L + G +DEA   ++ M S  
Sbjct: 192 EAWEKEGNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKG 251

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNV 324
           C P    +S  V     +    +AV  +  M  + G++ + +MY+A+IG  C A    + 
Sbjct: 252 CLPGINFFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDA 311

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKM 383
             +L +M    V  NS T + IL G I   +  EA      M K  +   A      I +
Sbjct: 312 LGLLDEMPLNDVFANSVTYHTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISL 371

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           F +      +  VW+ ++      +  +   LI GL D G  ++     ++MI+  +  S
Sbjct: 372 FFKEFNPSASIDVWRCIEEHNITLAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELS 431

Query: 444 GETFGKLRKLLIKEGRE 460
             T   +++   K GR 
Sbjct: 432 RSTMENMKRAFAKAGRH 448


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 165/312 (52%), Gaps = 2/312 (0%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSK 201
           R+ ++++ +   + ++  G+  +   +N ++  LCK+  V +A+++   M+   + PD+ 
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            Y+ ++ G+ K  N+  A ++F EM      PDIVTY  ++  +CK+G++ EA  +   M
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM 408

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                 P    Y+ L+  Y     +++A     +M + G+  +V  Y AL    CK  + 
Sbjct: 409 LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEI 468

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMM 380
                +L +M+ KG+ PN  T N I+NGL   G  ++  ++   M +     D  TYT +
Sbjct: 469 DVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTL 528

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  +C+ GE+ KA ++ + M  KR  P++ TF+VL+NG C  G++ D   L+E M+EKGI
Sbjct: 529 MDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGI 588

Query: 441 RPSGETFGKLRK 452
            P+  TF  L K
Sbjct: 589 MPNATTFNSLMK 600



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 160/319 (50%), Gaps = 2/319 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           +  ++  + ++  V  A   F+ M++  +  ++  +  ++  +CKS  + +A+E+F+ M 
Sbjct: 350 YTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEML 409

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            + + PD  TY+ L++G+ K   +  A  +  +MV  G  P++VTY  + D LCK G +D
Sbjct: 410 VKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEID 469

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  ++  M     +P  + Y+ +V+       IE  V    EM+  G   D   Y  L+
Sbjct: 470 VANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLM 529

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
            A+CK  +    + +L+ M +K + P   T N+++NG    G  ++  R+   M+ K   
Sbjct: 530 DAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIM 589

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +A T+  ++K +C    +    +++K M  +  +P  +T+++LI G C    + ++  L
Sbjct: 590 PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFL 649

Query: 432 LEDMIEKGIRPSGETFGKL 450
            ++M+EKG   +  T+  L
Sbjct: 650 HKEMVEKGYSVTAATYDAL 668



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 213/487 (43%), Gaps = 45/487 (9%)

Query: 22  YNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
           Y+   PS    D  + ++  +           L     R  P  +  VL   +N   L  
Sbjct: 38  YSPRNPSISDTDLVRRVTTTLKRRHLEPFRRVLKPYESRFKPSHLIWVLINLKNDYPLVL 97

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC------ 135
             F WA+ Q     S + +H  +ESL  +    +     N ++T + L  E FC      
Sbjct: 98  NLFNWAKSQ-----SQQQFHPTLESLCIVVHLSVA---SNDIQTAKRLVFE-FCAKPKID 148

Query: 136 -----------------------IIMRKYARVQK----VEEAVYTFNVMQKYGVTQNLAA 168
                                  ++   Y +V      V EA   F+ + +YGV  ++ +
Sbjct: 149 VSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDS 208

Query: 169 FNGLLSAL-CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM 226
            N  LS L C  + ++ A ++F+   +  +  ++ + +I+L    +   +  A  +  +M
Sbjct: 209 CNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQM 268

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            D G  PD+V+YG++V   C+ G +D+ L +V  +     +P  +IY+ ++        +
Sbjct: 269 TDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEV 328

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            +A      M K G+  D  +Y  +I  FCK        ++  +M  K + P+  T   +
Sbjct: 329 VEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSV 388

Query: 347 LNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++G+   G+  EA  +F  M +K  E D  TYT +I  +C+ GE+++AF V   M  K  
Sbjct: 389 IHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGL 448

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P++ T++ L +GLC  G +  +  LL +M  KG++P+  T+  +   L K G  +    
Sbjct: 449 TPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVK 508

Query: 466 LQEKMNL 472
           L E+M+L
Sbjct: 509 LMEEMDL 515



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 145/296 (48%), Gaps = 3/296 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I+   K  + +  + + N M  K +  NV T+  +     +  +++ A    + M
Sbjct: 419 TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM 478

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
            + G+  N+  +N +++ LCK  N+ +  ++ + M    F PD+ TY+ L++ + K   +
Sbjct: 479 SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEM 538

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+ R M++    P +VT+ ++++  C +G +++   +++ M      P +  ++ L
Sbjct: 539 AKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSL 598

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y ++N +    + +  M   G++ D   YN LI   CKA   K  + + K+M  KG 
Sbjct: 599 MKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY 658

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +  + T + ++ G   R +  EA ++F  M K    A+ D Y + + +  + G  E
Sbjct: 659 SVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 190/367 (51%), Gaps = 18/367 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y+ +I  L +  Q +   +++  M  +R + +  TF  ++  Y  V    +A+     M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G++ N+  +  L++++CK+ N+ +A E  D M+DR + P+ +TY+ L++G+ +   L
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFL 394

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A +I +EMV+ G  P I+TY  +++  C  GR+++A G+++ M      P    YS +
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +     +E A    +EM   GI  DVA Y++LI   CK  +   V  + ++M S G+
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T   ++N     G+ D+A R+   MI K    D  TY ++I  F +    ++A +
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 396 VWKYMKLKRFIPSMHTFSVLIN---------------GLCDKGIVSDSCVLLEDMIEKGI 440
           +   +  +  +P+  T++ LI+               G C KG+++++  +LE M++KG 
Sbjct: 575 LLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGY 634

Query: 441 RPSGETF 447
           + + E +
Sbjct: 635 KLNEEVY 641



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  I+  Y +++K+ EA     +M   G+  NL ++N +++ LC+   +++  EI 
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K R++PD  T++ L+ G+    N  +A  +  EMV  G +P++VTY  +++ +CKA
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 249 GRVDEAL-----------------------------------GIVKSMDSTVCRPTSFIY 273
           G ++ A+                                    I+K M      PT   Y
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ + +  R+EDA     EM + G + DV  Y+ +I  FC+  + +  +++  +M +
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG++P+  T + ++ GL  +    E   +F+ M+ L    D  TYT +I  +C  G+L+K
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A ++   M  K F P + T++VLING   +    ++  LL  ++ +   P+  T+  L
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTL 594



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 222/533 (41%), Gaps = 96/533 (18%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           S +AL A K+I  +     ++ L ++        +P+   ++L K +   +L   F  WA
Sbjct: 18  SGDALLADKAIVYLRRHPEQLTLLSS------HFTPQASSNLLLKSQFDSSLVLKFLDWA 71

Query: 88  EKQQNYE--------HSVRAY------HSMIESLAKIRQYQIMWDLVNAMRTKRML---N 130
             QQ +         H +  Y       S+ E +      +   DL   ++        +
Sbjct: 72  RSQQFFSFQCKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCLKNSYYQCKSS 131

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIF 189
              F ++++  ARV  + +A+   N+ + YG    + ++N +L A+ ++K +V+ A+ IF
Sbjct: 132 SAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIF 191

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+IL+ G+    NL      F EM   GC P++VTY  ++D  CK 
Sbjct: 192 KEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKL 251

Query: 249 GRVDEALGIVKSMD---------------STVCR--------------------PTSFIY 273
            ++ EA  +++ M                + +CR                    P    +
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y        A+    EM KNG+  +V  Y  LI + CKA         L  M  
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRD 371

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------------------------- 368
           +G+ PN RT   +++G   +G   +AY++ + M++                         
Sbjct: 372 RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMED 431

Query: 369 ----LCE-------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
               L E        D  +Y+ +I  FC+  ELEKAF++   M  K   P + T+S LI 
Sbjct: 432 ASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQ 491

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GLC +  + + C L ++M+  G+ P   T+  L      EG  D    L ++M
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 22/376 (5%)

Query: 54  LDQ---SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAK 109
           LDQ    G+  +      +++ F   G L   +    E  +N +  ++  Y+++I     
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 110 IRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           + + +    L+  M  +  + +V ++  I+  + R Q++E+A      M   G++ ++A 
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMV 227
           ++ L+  LCK + + +  ++F  M    +P D  TY+ L+  +  + +L +A  +  EM+
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-------- 279
             G +PDIVTY ++++   K  R  EA  ++  +      P    Y+ L+          
Sbjct: 546 QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605

Query: 280 -------YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
                  + ++  + +A      M + G   +  +YN +I    K    +  Y + K+M 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELE 391
             G AP+S T   +   L   G+  E  ++    +K C   +A    ++I +  + G ++
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMD 725

Query: 392 KAFKVWKYMKLKRFIP 407
             F V K M L   +P
Sbjct: 726 AVFNVLKDMALSGLLP 741



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 52/296 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y ++I    + ++ +  + L   M  K +  +V T+  +++   + +++ E    F 
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQ 507

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   G+  +   +  L++A C   ++ KA  + D M  + F PD  TY++L+ G+ K  
Sbjct: 508 EMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVD---------------VLCKAGRVDEALGIVK 259
               A+ +  +++     P+ +TY  ++D                 C  G ++EA  +++
Sbjct: 568 RTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLE 627

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI------------------ 301
           SM     +    +Y+V++H +     IE A + + EM  +G                   
Sbjct: 628 SMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEG 687

Query: 302 -----------------LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                            + + A+   LIG   K      V+ VLKDM   G+ P S
Sbjct: 688 KEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSGLLPYS 743


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 167/350 (47%), Gaps = 11/350 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           V + H ++ SL     + +  D+    R +  L   TF I++R      K   A+     
Sbjct: 85  VASLHPLLSSLPSAPAFALFADIY---RLRLPLCTTTFNIMLRHLCATGKPVRALELLRQ 141

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDP 214
           M +     N   +N +++  C    V+ A E+   M++R    PD  TY+ L+ GW K  
Sbjct: 142 MPR----PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIG 197

Query: 215 NLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +  A ++F EM+  G   P  V Y  ++   C  G++D AL   + M       T   Y
Sbjct: 198 RMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATY 257

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++LVH   ++ R  DA     EM++NG+  DV  YN LI  +CK    K    V ++M+ 
Sbjct: 258 NLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSR 317

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KGV   + T   ++     +G+  E  R+F+  +K     D   Y  +I   C GG++E+
Sbjct: 318 KGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMER 377

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           AF++   M+ KR  P   T++ LI G C  G + ++  L+++M ++GI+P
Sbjct: 378 AFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQP 427



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 146/325 (44%), Gaps = 13/325 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   +++  MR +  +  +  T+  ++  + ++ ++E+A   F+ M
Sbjct: 150 YNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEM 209

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V  +   +N L+   C    +  A +  + M  R +  +  TY++L+     D  
Sbjct: 210 LTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGR 269

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A  +  EM   G +PD+ TY I+++  CK G   +AL + + M     R T+  Y+ 
Sbjct: 270 ASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTS 329

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++ +  + ++++    F    K GI  DV MYNALI + C     +  + ++ +M  K 
Sbjct: 330 LIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKR 389

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + P+  T N ++ G    G  DEA  +   M K   + D           C+ G+ + A 
Sbjct: 390 IPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLG--------LCKNGQGDDAE 441

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGL 419
            + K M  K   P   T+  LI GL
Sbjct: 442 NLMKEMVGKGITPDDSTYISLIEGL 466



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            T+ IM+  LC  G+   AL +++ M     RP +  Y+ ++  +    R++ A++   E
Sbjct: 117 TTFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMRE 172

Query: 296 M-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGR 353
           M E+ GI  D   Y  LI  +CK  + ++  +V  +M ++G VAP++   N ++ G   R
Sbjct: 173 MRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDR 232

Query: 354 GETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G+ D A +    M++   A    TY +++      G    A+ V + M+     P + T+
Sbjct: 233 GKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTY 292

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           ++LING C +G    +  + E+M  KG+R +  T+  L     ++G+
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQ 339



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIG 352
           LE+ +     +   YN +I  FC   + +    V+++M  +G +AP+  T   +++G   
Sbjct: 136 LELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCK 195

Query: 353 RGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
            G  ++A +VF  M+   E    A  Y  +I  +C  G+L+ A +  + M  +    ++ 
Sbjct: 196 IGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVA 255

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           T+++L++ L   G  SD+  +LE+M   G+ P   T+  L     KEG E
Sbjct: 256 TYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNE 305


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 163/336 (48%), Gaps = 1/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++ +  R  K  E++Y    M   G T ++     L+     S+N+ KA  + + ++   
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD   Y+ L+ G+ K   L  A  +   M   G  PD+VTY IM+   C  G++D AL 
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           I + +    C PT   Y++L+    ++  I+ A+    EM   G+  D   YNA+I   C
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           K       + +L+ ++S+G  P+  T NI+L  L+ RG+  E  ++   MI + C+ +  
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T++++I   C+ G++E+A  + + MK K   P  + +  LI G C +G +  +   LE M
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           I  G  P    +  +   L + G+ D    + EK++
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD 410



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 175/365 (47%), Gaps = 9/365 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           K + +   V  Y+ MI S     +  +  ++   + +      V T+ I++        +
Sbjct: 165 KSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGI 224

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           + A+   + M   G+  +   +N ++  +CK   V KA E+   +  R   PD  TY+IL
Sbjct: 225 DVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNIL 284

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L             ++  EM+  GC P++VT+ I++  LC+ G+V+EA+ +++SM     
Sbjct: 285 LRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGL 344

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P ++ Y  L+  +  E R++ A +    M  +G L D+  YN ++   C+  K      
Sbjct: 345 KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALE 404

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC----EADADTYTMMIK 382
           V + ++  G  PN  + N + + L   G+    YR    ++KL     + D  TY  +I 
Sbjct: 405 VFEKLDEVGCPPNVSSYNTLFSALWSSGDR---YRALEMILKLLNQGIDPDEITYNSLIS 461

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+ G +++A ++   M+  R+ P++ ++++++ GLC     +D+  +L  M EKG +P
Sbjct: 462 CLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQP 521

Query: 443 SGETF 447
           +  T+
Sbjct: 522 NETTY 526



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 172/350 (49%), Gaps = 3/350 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY+++I    K  Q +    +++ M+++  L +V T+ I++  +    K++ A+  F 
Sbjct: 138 VFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFE 197

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            + K      +  +  L+ A      +  A ++ D M  + + PD+ TY+ ++ G  K+ 
Sbjct: 198 ELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEM 257

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A E+ R +   GC PDI+TY I++  L   G+  E   ++  M S  C+P    +S
Sbjct: 258 MVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHS 317

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+ T   + ++E+AV+    M++ G+  D   Y+ LI  FC+  +       L+ M S 
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD 377

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G  P+    N I+ GL   G+ D+A  VF ++ ++ C  +  +Y  +       G+  +A
Sbjct: 378 GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRA 437

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            ++   +  +   P   T++ LI+ LC  G+V ++  LL DM     RP+
Sbjct: 438 LEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPN 487



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 1/256 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  I++    R  KVEEAV     M++ G+  +   ++ L++  C+   +  A E  
Sbjct: 312 NVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFL 371

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M  D  +PD   Y+ ++ G  +     +A E+F ++ + GC P++ +Y  +   L  +
Sbjct: 372 EYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSS 431

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G    AL ++  + +    P    Y+ L+     +  +++A++  ++M+      +V  Y
Sbjct: 432 GDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSY 491

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK N+  +   VL  M  KG  PN  T  +++ G+   G   EA  +   +  
Sbjct: 492 NIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHG 551

Query: 369 LCEADADTYTMMIKMF 384
           +     D++  + K F
Sbjct: 552 MNAISEDSFNRLNKTF 567


>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 199/402 (49%), Gaps = 14/402 (3%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKV 147
           +Q  ++H   +Y +++  LA+ R ++ +  L++ ++   +   ET F  +++ Y + Q  
Sbjct: 476 QQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMP 535

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           E+AV  F  M  +   + L +FN LL+ L ++     A  IFD   K  F  +S +++I+
Sbjct: 536 EKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGFRRNSISFNII 595

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++GW       +A ++F EM+D    P +VT+  ++  LC  G +D A+G+++ M     
Sbjct: 596 IKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRH 655

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP +  Y++L+       + ++A     +M+  G    +  +  L+    +  +  +   
Sbjct: 656 RPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKT 715

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +L +M  +   P+  T NI++N L   G   EAY+V   M +  CE +A TY MM+  FC
Sbjct: 716 LLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFC 775

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q  + E   KV   M +    P + +F  L+ GL   G +  +C +LE+M ++ +R   E
Sbjct: 776 QVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLE 835

Query: 446 TFGKLRK----------LLIKEGREDVLKFLQEKMNLLVKEP 477
            +  L K           L++E +++  K ++ ++ L V EP
Sbjct: 836 AWEALVKDACPGDRGAGGLVRELKQNTTKIIK-RLVLTVLEP 876



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 150/306 (49%), Gaps = 2/306 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
           VQ  ++A+  FN  Q+ G   +  +++ L+  L +S+N    + + D +++  I   +T 
Sbjct: 462 VQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETL 521

Query: 204 SI-LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            I L++ +GK     +A E+F+ M    C+  +V++  +++VL +  R  +A+GI     
Sbjct: 522 FIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRST 581

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               R  S  +++++  +  +   + A   F EM    +   V  +N+LIG  C      
Sbjct: 582 KMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLD 641

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
               +L+DM  K   PN+ T  +++ GL   G+  EA ++   M  + C+     + +++
Sbjct: 642 GAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLM 701

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G ++ +  +   MK +RF P + T+++LIN LC +G   ++  +L +M   G  
Sbjct: 702 SDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCE 761

Query: 442 PSGETF 447
           P+  T+
Sbjct: 762 PNAATY 767



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 40/250 (16%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPT 269
           +DP+   A  +F +    G   D  +Y  +V  L ++   +    ++  + +    CR T
Sbjct: 463 QDPD--DALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRET 520

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            FI   L+  YG     E AV+ F  M        +  +N L+    + ++F +   +  
Sbjct: 521 LFI--ALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFD 578

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389
                G   NS + NII+ G +G+G                                  E
Sbjct: 579 RSTKMGFRRNSISFNIIIKGWLGKG----------------------------------E 604

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            +KA++V++ M  K   P++ TF+ LI  LC KG +  +  LLEDMI+K  RP+  T+  
Sbjct: 605 WDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNAVTYAL 664

Query: 450 LRKLLIKEGR 459
           L + L   G+
Sbjct: 665 LMEGLCSLGK 674


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 190/367 (51%), Gaps = 18/367 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y+ +I  L +  Q +   +++  M  +R + +  TF  ++  Y  V    +A+     M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            K G++ N+  +  L++++CK+ N+ +A E  D M+DR + P+ +TY+ L++G+ +   L
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFL 394

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A +I +EMV+ G  P I+TY  +++  C  GR+++A G+++ M      P    YS +
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +     +E A    +EM   GI  DVA Y++LI   CK  +   V  + ++M S G+
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T   ++N     G+ D+A R+   MI K    D  TY ++I  F +    ++A +
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 396 VWKYMKLKRFIPSMHTFSVLIN---------------GLCDKGIVSDSCVLLEDMIEKGI 440
           +   +  +  +P+  T++ LI+               G C KG+++++  +LE M++KG 
Sbjct: 575 LLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGY 634

Query: 441 RPSGETF 447
           + + E +
Sbjct: 635 KLNEEVY 641



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  I+  Y +++K+ EA     +M   G+  NL ++N +++ LC+   +++  EI 
Sbjct: 237 NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEIL 296

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K R++PD  T++ L+ G+    N  +A  +  EMV  G +P++VTY  +++ +CKA
Sbjct: 297 EEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKA 356

Query: 249 GRVDEAL-----------------------------------GIVKSMDSTVCRPTSFIY 273
           G ++ A+                                    I+K M      PT   Y
Sbjct: 357 GNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ + +  R+EDA     EM + G + DV  Y+ +I  FC+  + +  +++  +M +
Sbjct: 417 NALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA 476

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG++P+  T + ++ GL  +    E   +F+ M+ L    D  TYT +I  +C  G+L+K
Sbjct: 477 KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A ++   M  K F P + T++VLING   +    ++  LL  ++ +   P+  T+  L
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTL 594



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 222/533 (41%), Gaps = 96/533 (18%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           S +AL A K+I  +     ++ L ++        +P+   ++L K +   +L   F  WA
Sbjct: 18  SGDALLADKAIVYLRRHPEQLTLLSS------HFTPQASSNLLLKSQFDSSLVLKFLDWA 71

Query: 88  EKQQNYE--------HSVRAY------HSMIESLAKIRQYQIMWDLVNAMRTKRML---N 130
             QQ +         H +  Y       S+ E +      +   DL   ++        +
Sbjct: 72  RSQQFFSFQCKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCLKNSYYQCKSS 131

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIF 189
              F ++++  ARV  + +A+   N+ + YG    + ++N +L A+ ++K +V+ A+ IF
Sbjct: 132 SAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIF 191

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+IL+ G+    NL      F EM   GC P++VTY  ++D  CK 
Sbjct: 192 KEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKL 251

Query: 249 GRVDEALGIVKSMD---------------STVCR--------------------PTSFIY 273
            ++ EA  +++ M                + +CR                    P    +
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y        A+    EM KNG+  +V  Y  LI + CKA         L  M  
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRD 371

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------------------------- 368
           +G+ PN RT   +++G   +G   +AY++ + M++                         
Sbjct: 372 RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMED 431

Query: 369 ----LCE-------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
               L E        D  +Y+ +I  FC+  ELEKAF++   M  K   P + T+S LI 
Sbjct: 432 ASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQ 491

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GLC +  + + C L ++M+  G+ P   T+  L      EG  D    L ++M
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 22/376 (5%)

Query: 54  LDQ---SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAK 109
           LDQ    G+  +      +++ F   G L   +    E  +N +  ++  Y+++I     
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 110 IRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           + + +    L+  M  +  + +V ++  I+  + R Q++E+A      M   G++ ++A 
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMV 227
           ++ L+  LCK + + +  ++F  M    +P D  TY+ L+  +  + +L +A  +  EM+
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-------- 279
             G +PDIVTY ++++   K  R  EA  ++  +      P    Y+ L+          
Sbjct: 546 QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605

Query: 280 -------YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
                  + ++  + +A      M + G   +  +YN +I    K    +  Y + K+M 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELE 391
             G AP+S T   +   L   G+  E  ++    +K C   +A    ++I +  + G ++
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMD 725

Query: 392 KAFKVWKYMKLKRFIP 407
             F V K M L   +P
Sbjct: 726 AVFNVLKDMALSGLLP 741



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 52/296 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y ++I    + ++ +  + L   M  K +  +V T+  +++   + +++ E    F 
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQ 507

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   G+  +   +  L++A C   ++ KA  + D M  + F PD  TY++L+ G+ K  
Sbjct: 508 EMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVD---------------VLCKAGRVDEALGIVK 259
               A+ +  +++     P+ +TY  ++D                 C  G ++EA  +++
Sbjct: 568 RTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLE 627

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI------------------ 301
           SM     +    +Y+V++H +     IE A + + EM  +G                   
Sbjct: 628 SMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEG 687

Query: 302 -----------------LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                            + + A+   LIG   K      V+ VLKDM   G+ P S
Sbjct: 688 KEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSGLLPYS 743


>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 483

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 173/349 (49%), Gaps = 3/349 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVE 148
           Q  + H   +Y +++  LA+ R+++ +  ++  ++   +   +T F  +   Y +V  V 
Sbjct: 73  QNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTLFIALFEHYGKVGLVA 132

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           +A+  FN M  +   + L +FN LL+ L  +  +  A+++FD   +  F  +S  ++IL+
Sbjct: 133 KAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGFRLNSVPFNILI 192

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +GW K     +A ++F EM++    P +VTY  ++  LC+ G + +A G+ K M     R
Sbjct: 193 KGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKR 252

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  Y++L+         ++A     +ME  G       +  L+    K  K +    +
Sbjct: 253 PNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKIEEAKLL 312

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR-VFRRMIKLCEADADTYTMMIKMFCQ 386
           L +M  +   P+    NI++N L   G+  EAY+ +F   I  CEA+A TY M+   FCQ
Sbjct: 313 LLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRMLADGFCQ 372

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            GE E+  KV   M + R  P + TF+  + GL   G +  +  +LE+M
Sbjct: 373 VGEFEEGLKVLNAMLVSRHAPRIETFNCFVVGLMKSGSIDGAFFVLEEM 421



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 144/306 (47%), Gaps = 2/306 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
           V+  ++A+  F+   + G   +  +++ L+  L +S+     + +   ++D  +    T 
Sbjct: 58  VEDPDKALSLFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTL 117

Query: 204 SI-LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            I L E +GK   + +A  +F EM    C   + ++  +++VL    R+ +A  +     
Sbjct: 118 FIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSS 177

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               R  S  +++L+  +  +     A   F EM +  +   V  YN+LIG  C+  +  
Sbjct: 178 EMGFRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELG 237

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR-VFRRMIKLCEADADTYTMMI 381
               + KDM  KG  PN+ T  +++ GL   GE  EA + +F    + C+     + +++
Sbjct: 238 KAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVLM 297

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G++E+A  +   MK +RF P +  +++LIN LC +G V+++   L +M   G  
Sbjct: 298 NDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGGCE 357

Query: 442 PSGETF 447
            +  T+
Sbjct: 358 ANAATY 363



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 9/263 (3%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR---VDEALGIVKSMDSTVCRP 268
           +DP+  +A  +F + +  G   D  +Y  +V  L ++ R   V+  LG ++  +   CR 
Sbjct: 59  EDPD--KALSLFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFN-VRCRD 115

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           T FI   L   YG    +  A+  F EM     +  +  +NAL+      ++  +  ++ 
Sbjct: 116 TLFI--ALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLF 173

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
              +  G   NS   NI++ G + +GE  +A +VF  M+ +  E    TY  +I   C+ 
Sbjct: 174 DRSSEMGFRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRN 233

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           GEL KA  ++K M  K   P+  T+++L+ GLC  G   ++  +L DM  +G +P    F
Sbjct: 234 GELGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNF 293

Query: 448 GKLRKLLIKEGREDVLKFLQEKM 470
           G L   L K+G+ +  K L  +M
Sbjct: 294 GVLMNDLGKKGKIEEAKLLLLEM 316


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 200/438 (45%), Gaps = 38/438 (8%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           VS E V  +L+   +  + AF +FK   +  N+ H+  A + M+E L + R+ + M  + 
Sbjct: 96  VSEEEVMTILKSISDPNS-AFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVF 154

Query: 121 NAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS----- 174
           + M+ K +  N+ T+  I +  +    +  A +    M + G   N  ++NGL+      
Sbjct: 155 DLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPG 214

Query: 175 -----------------------------ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
                                        AL +  + RK   + + MK   + P+  TY+
Sbjct: 215 FCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYT 274

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I +   G+   +  A  IF+EM D GC PD++TY +++D LC AG++D+A  +   M ++
Sbjct: 275 ICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRAS 334

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y  L+  +G    +E     + EME +G   DV  Y  LI A CK+      
Sbjct: 335 SHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRA 394

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           + +L  M +KG+ PN  T N ++ GL+     DEA  +   M  L  +  A +Y + I  
Sbjct: 395 FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDY 454

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + + G+  KA   ++ MK +  +PS+   +  +  L + G +S++  +  D+ + G+ P 
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPD 514

Query: 444 GETFGKLRKLLIKEGRED 461
             T+  L K   K G+ D
Sbjct: 515 SVTYNMLMKCYSKAGQID 532



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 195/405 (48%), Gaps = 38/405 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S++ Y +++ +L +    + + +L+  M++  +  N+ T+ I +R   R +++++A   F
Sbjct: 234 SMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIF 293

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--------------------- 193
             M   G   ++  +  L+ ALC +  + KA+E++  M+                     
Sbjct: 294 KEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKV 353

Query: 194 ---------------DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
                          D + PD  TY+IL+E   K  ++ RA ++   M   G  P++ TY
Sbjct: 354 GDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTY 413

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             M+  L KA R+DEAL ++++M+S   +PT+F Y + +  YG       A+DTF  M+K
Sbjct: 414 NTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKK 473

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI+  +A  NA +    +  +      +  D++  G++P+S T N+++      G+ D+
Sbjct: 474 RGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDK 533

Query: 359 AYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A ++   MI K CE D      +I    + G ++ A+K++  +K  +  P++ T+++L+ 
Sbjct: 534 ATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLT 593

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           GL  +G +  +  L   M E G  P+  TF  L   L K    D+
Sbjct: 594 GLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDL 638



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 163/322 (50%), Gaps = 2/322 (0%)

Query: 131  VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
            +E++  +M         E+A+  F  M+  G   N   +N LL A  KSK + K  +++ 
Sbjct: 796  LESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYS 855

Query: 191  CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             M+ R   P++ T++I++    K  NL +A +++ E++    +P   TYG ++D L KAG
Sbjct: 856  EMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAG 915

Query: 250  RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            R ++A+ I + M    C P S IY++L++ +G    I+ A + F +M K GI  D+  Y 
Sbjct: 916  RSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYT 975

Query: 310  ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
             L+   C   +     +  +++   G+ P++ + N I+NGL      DEA  +F  M  +
Sbjct: 976  ILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNR 1035

Query: 369  LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
                D  TY  +I      G+++ A K+++ ++L    PS+ T++ LI G    G    +
Sbjct: 1036 GISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQA 1095

Query: 429  CVLLEDMIEKGIRPSGETFGKL 450
              + + M+  G  P+ ETF +L
Sbjct: 1096 FSVFKKMMVVGCSPNTETFAQL 1117



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 161/335 (48%), Gaps = 3/335 (0%)

Query: 146  KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTY 203
            ++EEA+    ++    V Q+      L+  LCK K    AQ +FD         P  ++Y
Sbjct: 740  EIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESY 799

Query: 204  SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            + L++G        +A E+F +M   G +P+  TY +++D   K+ R+++   +   M S
Sbjct: 800  NCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRS 859

Query: 264  TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              C P +  +++++      N +  A+D + E+           Y  LI    KA + + 
Sbjct: 860  RGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQ 919

Query: 324  VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
              ++ ++M   G  PNS   NI++NG    GE D A  +F++M+K     D  +YT++++
Sbjct: 920  AMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVE 979

Query: 383  MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              C  G +++A + ++ +KL    P   +++ +INGL     + ++  L  +M  +GI P
Sbjct: 980  CLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISP 1039

Query: 443  SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
               T+  L   L   G+ DV   + E++ L+  EP
Sbjct: 1040 DLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEP 1074



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 150/297 (50%), Gaps = 2/297 (0%)

Query: 133  TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DC 191
            T+ +++  + + +++ +    ++ M+  G   N    N ++SAL KS N+ KA +++ + 
Sbjct: 833  TYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYEL 892

Query: 192  MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            M   F P   TY  L++G  K     +A +IF EM+D GC P+ V Y I+++   K+G +
Sbjct: 893  MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEI 952

Query: 252  DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            D A  + K M     RP    Y++LV    +  RI++AV  F E++  G+  D   YN +
Sbjct: 953  DFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFI 1012

Query: 312  IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
            I    K+ +      +  +M ++G++P+  T N ++  L   G+ D A +++  + +   
Sbjct: 1013 INGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGL 1072

Query: 371  EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
            E    TY  +I+     G  ++AF V+K M +    P+  TF+ L N     G+V +
Sbjct: 1073 EPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHN 1129



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 151/306 (49%), Gaps = 8/306 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAV 151
           ++  Y++MI  L K R+     +L+  M +   L V+    ++ + +  Y +     +A+
Sbjct: 409 NLHTYNTMICGLLKARRLDEALELLENMES---LGVKPTAFSYVLFIDYYGKSGDPAKAI 465

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW 210
            TF  M+K G+  ++AA N  L  L ++  + +A++IF D  K    PDS TY++L++ +
Sbjct: 466 DTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCY 525

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   + +A ++  EM+  GC PD++    +++ L KAGRVD A  +   + +    PT 
Sbjct: 526 SKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTV 585

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++L+   G E +I  A++ F  M ++G   +   +N+L+    K +      ++   
Sbjct: 586 VTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCR 645

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
           M      P+  T N I+ GLI  G  D A+  F +M K    D  T   +I    + G +
Sbjct: 646 MTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRV 705

Query: 391 EKAFKV 396
           E A KV
Sbjct: 706 EDAIKV 711



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 154/299 (51%), Gaps = 3/299 (1%)

Query: 99   AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
             Y+ ++++  K ++   ++DL + MR++    N  T  II+    +   + +A+  +  +
Sbjct: 833  TYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYEL 892

Query: 158  QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
                 +     +  L+  L K+    +A +IF+ M D    P+S  Y+IL+ G+GK   +
Sbjct: 893  MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEI 952

Query: 217  PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              A E+F++MV  G  PD+ +Y I+V+ LC  GR+DEA+   + +  T   P +  Y+ +
Sbjct: 953  DFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFI 1012

Query: 277  VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            ++  G   R+++A+  F EM+  GI  D+  YNALI     A K     ++ +++   G+
Sbjct: 1013 INGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGL 1072

Query: 337  APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             P+  T N ++ G    G  D+A+ VF++M+ + C  + +T+  +   + + G +   F
Sbjct: 1073 EPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPF 1131



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 8/323 (2%)

Query: 146  KVEEAVYTFNVMQKY----GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDS 200
            K ++A+   NV  K+    G+   L ++N L+  L  S    KA E+F+ MK     P++
Sbjct: 772  KRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNN 831

Query: 201  KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
             TY++LL+  GK   + +  +++ EM   GC P+ +T+ I++  L K+  +++AL +   
Sbjct: 832  FTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYE 891

Query: 261  MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
            + S    PT   Y  L+       R E A+  F EM   G   +  +YN LI  F K+ +
Sbjct: 892  LMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGE 951

Query: 321  FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YT 378
                  + K M  +G+ P+ ++  I++  L   G  DEA + F  + KL   D DT  Y 
Sbjct: 952  IDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL-KLTGLDPDTVSYN 1010

Query: 379  MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
             +I    +   L++A  ++  MK +   P ++T++ LI  L   G V  +  + E++   
Sbjct: 1011 FIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLV 1070

Query: 439  GIRPSGETFGKLRKLLIKEGRED 461
            G+ PS  T+  L +     G +D
Sbjct: 1071 GLEPSVFTYNALIRGHSLSGNKD 1093



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 174/417 (41%), Gaps = 41/417 (9%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E  V   +S+I +L K  +    W +   ++  ++   V T+ I++    +  K+ +A+ 
Sbjct: 547 EPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALE 606

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
            F  M + G   N   FN LL  L K+  V  A ++F  M      PD  TY+ ++ G  
Sbjct: 607 LFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLI 666

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT-S 270
           ++  +  A   F +M     +PD VT   ++  + + GRV++A+ +V       C  T S
Sbjct: 667 REGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNS 725

Query: 271 FIYSVLVHTYGVENRIEDAV-----------------------------------DTFLE 295
             +  L+     E  IE+A+                                   + F +
Sbjct: 726 QFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDK 785

Query: 296 MEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
             KN GI   +  YN L+     +N  +    + +DM S G  PN+ T N++L+      
Sbjct: 786 FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSK 845

Query: 355 ETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             ++ Y ++  M  + CE +A T+ ++I    +   L KA  ++  +    F P+  T+ 
Sbjct: 846 RINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYG 905

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            LI+GL   G    +  + E+M++ G  P+   +  L     K G  D    L +KM
Sbjct: 906 PLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 133  TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            ++  I+    + ++++EA+  F+ M+  G++ +L  +N L+  L  +  V  A ++++ +
Sbjct: 1008 SYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067

Query: 193  KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +   + P   TY+ L+ G     N  +A  +F++M+  GC+P+  T+  + +   +AG V
Sbjct: 1068 QLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127

Query: 252  DEALGIV 258
                G V
Sbjct: 1128 HNPFGAV 1134


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 203/432 (46%), Gaps = 21/432 (4%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           SS+P+        S   ++L  P   L   L Q GI  SPE    VL +           
Sbjct: 201 SSDPA--------SFDFLLLCLPSAPLLRRLRQYGISPSPEACNAVLSRLP--------L 244

Query: 84  FKWAEKQQNYEH-SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142
            +  E  Q   H +V +Y+ ++++L    + +    L + M +    +V T+ I++  + 
Sbjct: 245 DEAIELFQELPHKNVCSYNILLKALCDAGRVKDARQLFDEMASAP--DVVTYGILIHGHC 302

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSK 201
            + ++E AV   + M   GV  N   +  +++ LC    +  A  +  D ++ + I D  
Sbjct: 303 ALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEA 362

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            Y+ +L G+    +L  AR  F EM   G   D VTY  M++ LC+A  ++EA  +++ M
Sbjct: 363 LYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEM 422

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +         Y+VL+  Y    ++ +A      M + G+  +V  Y AL    CK    
Sbjct: 423 WARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDV 482

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMM 380
           +    +L +M++KG+  N+ T N ++NGL   G  ++A R    M   C + D  TYT +
Sbjct: 483 QAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTL 542

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+ G+L++A  + + M  K   P++ T++VL+NG C  G V     LL+ M+EK I
Sbjct: 543 IDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNI 602

Query: 441 RPSGETFGKLRK 452
            P+  T+  L K
Sbjct: 603 HPNAATYNSLMK 614



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 158/306 (51%), Gaps = 2/306 (0%)

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGK 212
           F+ MQ+ G+  +   +  +++ LC++  + +A+++   M  R +  D  TY++L++G+ K
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCK 443

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +  A ++   MV  G  P++VTY  + D LCK G V  A  ++  M +      +  
Sbjct: 444 RGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACT 503

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++       +E A+ T  +M+   +  DV  Y  LI A CK+      + +L++M 
Sbjct: 504 YNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEML 563

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            KG+ P   T N+++NG    G  +   ++   M+ K    +A TY  ++K +C    ++
Sbjct: 564 DKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMK 623

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
              +++K M+ +   P+ +T+++LI G C    + ++    ++MI+KG R +  ++  L 
Sbjct: 624 STTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALI 683

Query: 452 KLLIKE 457
           +LL K+
Sbjct: 684 RLLNKK 689



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 42/349 (12%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
           ++EA+  F  +      +N+ ++N LL ALC +  V+ A+++FD M     PD  TY IL
Sbjct: 244 LDEAIELFQELPH----KNVCSYNILLKALCDAGRVKDARQLFDEMAS--APDVVTYGIL 297

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G      L  A ++  EMV  G  P+   Y  +V +LC  G + +AL +V+ M     
Sbjct: 298 IHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKV 357

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                +Y+ ++  +  +  +  A   F EM++ G+  D   Y  +I   C+A + +   +
Sbjct: 358 ILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEK 417

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LC 370
           +L++M ++ +  +  T  ++++G   RG+  EA+++   M++                LC
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLC 477

Query: 371 --------------------EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                               E +A TY  +I   C+ G LE+A +    M      P ++
Sbjct: 478 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVY 537

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           T++ LI+ LC  G +  +  LL++M++KGI+P+  T+  L       GR
Sbjct: 538 TYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR 586



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 179/406 (44%), Gaps = 52/406 (12%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA--YHSMI 104
           KV+LD AL  +           VL  F N G L     +W ++ Q    +     Y +MI
Sbjct: 356 KVILDEALYTT-----------VLSGFCNKGDLVSAR-RWFDEMQRKGLATDGVTYTTMI 403

Query: 105 ESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
             L +  + +    L+  M  +R+ ++  T+ +++  Y +  K+ EA    N M + GVT
Sbjct: 404 NGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVT 463

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREI 222
            N+  +  L   LCK  +V+ A E+   M ++ +  ++ TY+ L+ G  K   L +A   
Sbjct: 464 PNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRT 523

Query: 223 FREMVDTGC-NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
             +M DT C  PD+ TY  ++D LCK+G +D A  +++ M     +PT   Y+VL++ + 
Sbjct: 524 MADM-DTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 582

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           +  R+E        M +  I  + A YN+L+  +C  N  K+   + K M S+ V PN  
Sbjct: 583 MSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNE- 641

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
                                            +TY ++IK  C+   +++A      M 
Sbjct: 642 ---------------------------------NTYNILIKGHCKARNMKEALYFHDEMI 668

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            K F  +  ++S LI  L  K    ++  L  DM ++G+    + +
Sbjct: 669 QKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVY 714



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 2/196 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I++L K         L+  M  K +   + T+ ++M  +    +VE      +
Sbjct: 536 VYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLD 595

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M +  +  N A +N L+   C   N++   EI+  M+ R + P+  TY+IL++G  K  
Sbjct: 596 WMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKAR 655

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N+  A     EM+  G      +Y  ++ +L K  +  EA  +   M        S +Y 
Sbjct: 656 NMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYD 715

Query: 275 VLVHTYGVENRIEDAV 290
             +     E+ +E  +
Sbjct: 716 FYIDLNFNEDNLESTL 731


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTF 137

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+  ++  FN LL  LC    V +A  +F  M +    P+  T++ L+ G  ++
Sbjct: 138 GKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCRE 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFI 272
             +  A  +   M++ G  P  +TYG +VD +CK G    AL +++ M+  +   P   I
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS ++ +   + R  DA + F EM++ GI  D+  YN++I  FC + ++ +  ++L++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + ++P+  T N ++N  +  G+  EA  ++  M+ +    +  TY+ MI  FC+   L+
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLD 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  ++  M  K   P++ TF+ LI+G C    + D   LL +M E G+     T+  L
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 13/345 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  I+    +  +  +A   F  MQ+ G+  +L  +N ++   C S     A+++ 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R I PD  TY+ L+  + K+     A E++ EM+  G  P+ +TY  M+D  CK 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+D A  +   M +  C P    ++ L+  Y    RI+D ++   EM + G++AD   Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  F           +L++M S G+ P+  TC+ +L+GL   G+  +A  +F+ M K
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 369 L------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
                         E D  TY ++I      G+  +A ++++ M  +  +P   T+S +I
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +GLC +  + ++  + + M  K   P+  TF  L     K GR D
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+SL K  ++    +L   M+ K +  ++ T+  ++  +    +  +A    
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M +  ++ ++  +N L++A  K     +A+E++D M  R  IP++ TYS +++G+ K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   GC+P+++T+  ++D  C A R+D+ + ++  M  T     +  Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H + +   +  A+D   EM  +G+  D+   + L+   C   K K+   + K M  
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 334 K-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
                       GV P+ +T NI+++GLI  G+  EA  ++  M  +    D  TY+ MI
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   L++A +++  M  K F P++ TF+ LING C  G V D   L  +M  +GI 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 442 PSGETF 447
            +  T+
Sbjct: 614 ANAITY 619



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 14/344 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  ++ EAV   + M + G+      +  ++  +CK  +   A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    IP+   YS +++   KD     A+ +F EM + G  PD+ TY  M+   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +GR  +A  +++ M      P    Y+ L++ +  E +  +A + + EM   GI+ +   
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+++I  FCK N+      +   M +KG +PN  T N +++G  G    D+   +   M 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +    AD  TY  +I  F   G+L  A  + + M      P + T   L++GLCD G + 
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 427 DSCVLLEDMIEK-----------GIRPSGETFGKLRKLLIKEGR 459
           D+  + + M +            G+ P  +T+  L   LI EG+
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 13/281 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I+     ++     +L++ M  T  + +  T+  ++  +  V  +  A+     M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK------------DRFIPDSKTYSI 205
              G+  ++   + LL  LC +  ++ A E+F  M+            +   PD +TY+I
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P    ++ L++ Y    R++D ++ F EM + GI+A+   Y  LI  F K        
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            + ++M S GV P++ T   +L GL  + E   A  +  ++
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 3/329 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-D 199
           +  ++ +E+A+  F+ M +     ++  F  L+  + + +       ++  M+ + I  D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +++IL++ +     LP A   F ++   G +PD+VT+  ++  LC   RV EAL +  
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M  T CRP    ++ L++    E RI +AV     M ++G+      Y  ++   CK  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 320 KFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              +   +L+ M     + PN    + I++ L   G   +A  +F  M  K    D  TY
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             MI  FC  G    A ++ + M  ++  P + T++ LIN    +G   ++  L ++M+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           +GI P+  T+  +     K+ R D  + +
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 3/268 (1%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +M+ +   P +V +  ++ V+ +  R D  + + + M+   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R   + +++L+  +   +++  A+ TF ++ K G+  DV  +N L+   C  ++     
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
            +   M      PN  T   ++NGL   G   EA  +  RM++   +    TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 385 CQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M ++   IP++  +S +I+ LC  G  SD+  L  +M EKGI P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  D  + LQE +
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEML 317



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 24/219 (10%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L+AA  + + M+SS   P +V  DT LD  G+  + ++ +D LE F+          + +
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKL-KDALEMFK--------VMQKS 494

Query: 88  EKQQNYEH-------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
           +K  +  H        V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++ 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIP 198
              +  +++EA   F+ M     + N+  F  L++  CK+  V    E+F  M  R  + 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++ TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653


>gi|357511073|ref|XP_003625825.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500840|gb|AES82043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 485

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 14/384 (3%)

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET------- 133
           F  F WA     + H+  +Y  M  +LA   ++ ++  L+  + T      +        
Sbjct: 82  FHLFSWASTLDTFSHNHTSYEWMTRTLALSHRFSLLRTLLTFISTNPCQCSQAIFSCPQT 141

Query: 134 ---FCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
              F   ++ Y +  K ++AVY FNVM++      +++  N L+    KS    +A E +
Sbjct: 142 EPIFRFAIQYYCKAFKFDDAVYAFNVMRRLIDGKPSVSVCNILIHGFVKSGRFDRAFEFY 201

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M KDR  PD  T++IL+ G+ +D     A E+F EM   GC+P++VT+  ++  L + 
Sbjct: 202 NQMVKDRIKPDVFTFNILISGYCRDFKFGFALEMFDEMRKMGCHPNVVTFNTLIKGLFRE 261

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            RVDE +G+V  M    C+ +     +LV     E R+    D  +E  K G+L     Y
Sbjct: 262 CRVDEGIGMVYEMIELGCQLSDVTCEILVDGLCKEGRVSQVCDLLMEFSKRGVLPKGYDY 321

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             L+   C   +      V+ ++ SKG  P+  +C ++++GL G G+ +EA R+  +M+K
Sbjct: 322 FVLVEILCGKGEAFKALEVIYELWSKGCVPSLISCIVMIDGLRGLGKIEEAMRLVEKMLK 381

Query: 369 L--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 D  T+  +++  C  G  E A ++      K   P   T+ +L+ G   +G  S
Sbjct: 382 EEGMVLDVVTFNSVLQDLCDAGRTEDANRLRLLASSKGLEPDAMTYKILVAGYRGEGNQS 441

Query: 427 DSCVLLEDMIEKGIRPSGETFGKL 450
           +  +++ +M++KG  P   ++ KL
Sbjct: 442 EGELVVNEMLDKGFIPDLASYNKL 465



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 35/218 (16%)

Query: 242 VDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +   CKA + D+A+     M   +  +P+  + ++L+H +    R + A + + +M K+ 
Sbjct: 149 IQYYCKAFKFDDAVYAFNVMRRLIDGKPSVSVCNILIHGFVKSGRFDRAFEFYNQMVKDR 208

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           I  DV  +N LI  +C+  KF     +  +M   G  PN  T N ++ GL      DE  
Sbjct: 209 IKPDVFTFNILISGYCRDFKFGFALEMFDEMRKMGCHPNVVTFNTLIKGLFRECRVDEGI 268

Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
            +   MI+L               CQ  ++                    T  +L++GLC
Sbjct: 269 GMVYEMIELG--------------CQLSDV--------------------TCEILVDGLC 294

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +G VS  C LL +  ++G+ P G  +  L ++L  +G
Sbjct: 295 KEGRVSQVCDLLMEFSKRGVLPKGYDYFVLVEILCGKG 332



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 307 MYNALIGAFCKANKFK------NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           ++   I  +CKA KF       NV R L D       P+   CNI+++G +  G  D A+
Sbjct: 144 IFRFAIQYYCKAFKFDDAVYAFNVMRRLIDGK-----PSVSVCNILIHGFVKSGRFDRAF 198

Query: 361 RVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
             + +M+K   + D  T+ ++I  +C+  +   A +++  M+     P++ TF+ LI GL
Sbjct: 199 EFYNQMVKDRIKPDVFTFNILISGYCRDFKFGFALEMFDEMRKMGCHPNVVTFNTLIKGL 258

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +  V +   ++ +MIE G + S  T   L   L KEGR
Sbjct: 259 FRECRVDEGIGMVYEMIELGCQLSDVTCEILVDGLCKEGR 298



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 102/298 (34%), Gaps = 73/298 (24%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV   + +I    K  ++   ++  N M   R+  +V TF I++  Y R  K   A+  F
Sbjct: 177 SVSVCNILIHGFVKSGRFDRAFEFYNQMVKDRIKPDVFTFNILISGYCRDFKFGFALEMF 236

Query: 155 NVMQKYGVTQNLAAFNGLL-----------------------------------SALCKS 179
           + M+K G   N+  FN L+                                     LCK 
Sbjct: 237 DEMRKMGCHPNVVTFNTLIKGLFRECRVDEGIGMVYEMIELGCQLSDVTCEILVDGLCKE 296

Query: 180 KNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP----- 233
             V +  ++  +  K   +P    Y +L+E         +A E+  E+   GC P     
Sbjct: 297 GRVSQVCDLLMEFSKRGVLPKGYDYFVLVEILCGKGEAFKALEVIYELWSKGCVPSLISC 356

Query: 234 -------------------------------DIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
                                          D+VT+  ++  LC AGR ++A  +     
Sbjct: 357 IVMIDGLRGLGKIEEAMRLVEKMLKEEGMVLDVVTFNSVLQDLCDAGRTEDANRLRLLAS 416

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           S    P +  Y +LV  Y  E    +      EM   G + D+A YN L+ A     +
Sbjct: 417 SKGLEPDAMTYKILVAGYRGEGNQSEGELVVNEMLDKGFIPDLASYNKLMDALSNCQR 474



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
           A+ V RR+I   +       ++I  F + G  ++AF+ +  M   R  P + TF++LI+G
Sbjct: 164 AFNVMRRLID-GKPSVSVCNILIHGFVKSGRFDRAFEFYNQMVKDRIKPDVFTFNILISG 222

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            C       +  + ++M + G  P+  TF  L K L +E R D
Sbjct: 223 YCRDFKFGFALEMFDEMRKMGCHPNVVTFNTLIKGLFRECRVD 265


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 182/385 (47%), Gaps = 5/385 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKV 147
           QQ    +V  Y+S+I +L K R       ++  M    +   NV T+  ++  Y+ + + 
Sbjct: 239 QQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNV-TYNTLIHGYSTLGQW 297

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           ++AV  F  M   GV  N    +  ++ LCK   + +A+E FD M  +    +  +YS L
Sbjct: 298 KQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTL 357

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L G+     L     +F  MV  G  P+   + I+V+   K G V EA+ I + M     
Sbjct: 358 LHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGL 417

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y  ++H +     ++DA+D F  M   G+  + A+Y  LI  FC          
Sbjct: 418 NPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEE 477

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFC 385
           ++ ++ +KG+ P   +   ++N L   G   EA R+F  +I+  E AD + +T +I  +C
Sbjct: 478 LVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYC 537

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G++ +AF+V   M      P + T+  L+NG C  G + D  +L  +++ KG++P+  
Sbjct: 538 LIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTF 597

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           T+G +   L   GR    K + ++M
Sbjct: 598 TYGIILDGLFHAGRTAAAKEMFQEM 622



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 190/406 (46%), Gaps = 38/406 (9%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
           + ++ ++ +Y +++   A       M +L N M R   + N   F I++  YA+   V E
Sbjct: 345 KGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVRE 404

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A++ F  MQK G+  ++  +  ++ A C+  ++  A + F+ M D+ + P+   Y  L++
Sbjct: 405 AMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQ 464

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+    +L +A E+  E+ + G  P I+++  +++ LCK GRV EA  I   +  T  + 
Sbjct: 465 GFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKA 524

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
              I++ L+  Y +  ++ +A      M   GI  D+  Y  L+   CK  +  +   + 
Sbjct: 525 DVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILF 584

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQG 387
           +++  KGV P + T  IIL+GL   G T  A  +F+ MI+   A    TY++++   C+ 
Sbjct: 585 RELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRN 644

Query: 388 GELEKAFKVW--------------------KYMKLKR---------------FIPSMHTF 412
              E+A  V+                    K  K +R                +P++ T+
Sbjct: 645 NCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTY 704

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           ++++  L  +G V ++  +   M++ G+ P+      + + L+++G
Sbjct: 705 TIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKG 750



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 5/337 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI- 188
            V T+ I++    R ++++ A   F  + + G+  ++   + LL  LC +K   +A ++ 
Sbjct: 102 TVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVL 161

Query: 189 FDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMV--DTGCNPDIVTYGIMVDVL 245
           F  M +   +PD+ +YS +L+    D     A +I R  V    GC  ++V Y  +V  L
Sbjct: 162 FHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGL 221

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
            K G+V EA  +   M      P    Y+ ++H       ++ A     +M  NG+  D 
Sbjct: 222 FKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDN 281

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN LI  +    ++K   R+ K+M S+GV PN+ TC+  +  L   G  +EA   F  
Sbjct: 282 VTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDS 341

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+ K  + +  +Y+ ++  +   G L     ++  M     +P+ H F++L+NG    G+
Sbjct: 342 MLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGM 401

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           V ++  + EDM ++G+ P   T+  +     + G  D
Sbjct: 402 VREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMD 438



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 160/345 (46%), Gaps = 15/345 (4%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           ++ FC     +  + K EE VY    ++  G+   + +F  L++ LCK   V +AQ IFD
Sbjct: 463 IQGFC----THGDLVKAEELVYE---IRNKGLGPCILSFASLINHLCKEGRVFEAQRIFD 515

Query: 191 -CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             ++     D   ++ L++G+     +  A  +   MV  G  PDIVTYG +V+  CK G
Sbjct: 516 MIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNG 575

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R+D+ L + + +     +PT+F Y +++       R   A + F EM ++GI   +  Y+
Sbjct: 576 RIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYS 635

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            L+   C+ N  +    V + + +  V  +    NI+++ +      +EA  +F  +   
Sbjct: 636 ILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDY 695

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
                  TYT+M++   + G +E+A  V+  M      P+ H  +V++  L +KG +  +
Sbjct: 696 GLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA 755

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            + +  +  K I     T   L  L   +G+       +E +NLL
Sbjct: 756 GIYMCRVDGKSILFEASTASMLLSLFSCKGKH------REHLNLL 794



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 105/373 (28%)

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK---IRQYQIMWDLVNAM 123
           E+++ + RN G L  C   +A              S+I  L K   + + Q ++D++  +
Sbjct: 476 EELVYEIRNKG-LGPCILSFA--------------SLINHLCKEGRVFEAQRIFDMI--I 518

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV- 182
           RT    +V  F  ++  Y  + K+ EA    + M   G+  ++  +  L++  CK+  + 
Sbjct: 519 RTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRID 578

Query: 183 ----------------------------------RKAQEIFDCMKDRFIPDS-KTYSILL 207
                                               A+E+F  M +  I  +  TYSILL
Sbjct: 579 DGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILL 638

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  ++     A  +F+++       DIV   IM+  + KA R +EA G+  S+      
Sbjct: 639 TGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLV 698

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           PT   Y++++     E  +E+A   F  M K+G+                          
Sbjct: 699 PTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGL-------------------------- 732

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-------ADTYTMM 380
                    +P S   N+I+  L+ +GE      + +  I +C  D       A T +M+
Sbjct: 733 ---------SPTSHFINVIVRTLLEKGE------IVKAGIYMCRVDGKSILFEASTASML 777

Query: 381 IKMF-CQGGELEK 392
           + +F C+G   E 
Sbjct: 778 LSLFSCKGKHREH 790



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 88/190 (46%), Gaps = 4/190 (2%)

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
           V  PT + YS+L+       R++ A   F  + + G+ ADV + ++L+   C A +    
Sbjct: 98  VALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEA 157

Query: 325 YRVL-KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL---CEADADTYTMM 380
             VL   M   G  P++ + + +L  +   G +  A  + R  +K    C  +   Y+ +
Sbjct: 158 VDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTV 217

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +    + G++ +A  ++  M  +   P++ T++ +I+ LC    V  +  +L  M+  G+
Sbjct: 218 VHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGV 277

Query: 441 RPSGETFGKL 450
           +P   T+  L
Sbjct: 278 QPDNVTYNTL 287



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           L  V  Y+ LI   C+A +    +     +  +G+  +    + +L GL     TDEA  
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 362 V-FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY-MKLKRFIP-SMHTFSVLIN 417
           V F RM +L C  DA +Y+ ++K  C  G  + A  + +  +K     P ++  +S +++
Sbjct: 160 VLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVH 219

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           GL  +G V ++C L  +M ++G+ P+  T+  +   L K
Sbjct: 220 GLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCK 258


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 204/464 (43%), Gaps = 77/464 (16%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYA 142
           FK A +  +Y+     ++S+IE+ A    +  ++ + + M+ +R + +E  F ++ R Y 
Sbjct: 67  FKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYG 126

Query: 143 RVQKVEEAVYTFNVM--------------------------------------QKYGVTQ 164
           +    E+A+  F  M                                       K  ++ 
Sbjct: 127 KAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISP 186

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFD---------------------CMKDRF------- 196
           N+ +FN ++ A+CK   V +A E+F                      C +DR        
Sbjct: 187 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 246

Query: 197 --------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
                    P S T+++L+ G  K  ++ R  ++   M   GC P+ VTY  +++ LC  
Sbjct: 247 DEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLK 306

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++D+A+ ++  M ++ C P    Y  L++    + R  D V     +E+ G  A+   Y
Sbjct: 307 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 366

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + LI    K  K +    + K M  KG  PN    + +++GL   G+ DEA  +   M+ 
Sbjct: 367 STLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVN 426

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K C  +A TY+ +IK F + G  +KA +VWK M     +P+   +SVLI+GLC+ G + +
Sbjct: 427 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 486

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQEKM 470
           + ++   M+ +G+RP    +  +   L   G  +V LK   E +
Sbjct: 487 AMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEML 530



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 150/331 (45%), Gaps = 9/331 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++ +I  L K      +  LV+ M  K  + N  T+  I+       K+++AV   + M
Sbjct: 260 TFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRM 319

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                  N   +  L++ L K         +   +++R    +   YS L+ G  K+   
Sbjct: 320 VASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKS 379

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++++MV+ GC P+IV Y  ++D LC+ G++DEA  I+  M +  C P +F YS L
Sbjct: 380 EEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSL 439

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +      + A+  + EM KN  + +   Y+ LI   C+  K +    +   M  +G+
Sbjct: 440 IKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 499

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-----EADADTYTMMIKMFCQGGELE 391
            P+    + +++GL   G  +   ++F  M  LC     + D  TY ++++  C+   + 
Sbjct: 500 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEM--LCQESDSQPDVVTYNILLRALCKQNSIS 557

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            A  +   M  +   P + T ++ +N L +K
Sbjct: 558 HAIDLLNSMLDRGCNPDLITCNIFLNALREK 588


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 174/351 (49%), Gaps = 6/351 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF ++++   +V  V++AV  F  M       ++  +  L+  LCK+  + +A  + 
Sbjct: 168 NVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLL 227

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M+ D   P   T+++L+ G  K  +L R  ++   M   GC P+ VTY  ++  LC  
Sbjct: 228 DEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLK 287

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++A+ ++  M S+ C P    Y  +++    + R  D       ME+ G   +  +Y
Sbjct: 288 GKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVY 347

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           +ALI    K  K +   ++ K+M  K    N+   + +++GL   G+ DEA  V   M  
Sbjct: 348 SALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTN 407

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C+ +A TY+ ++K F + G   KA ++WK M    F  +   +SVLI+GLC  G V +
Sbjct: 408 NRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKE 467

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEP 477
           + ++   M+ KG +P    +G +   L   G  ED L+   E   +L +EP
Sbjct: 468 AMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNE---MLCQEP 515



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 181/400 (45%), Gaps = 52/400 (13%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR----TKRMLNVETFCIIMRKYARV 144
           K  N   +V  ++ +I+++ K+    ++ D V   R    +K   +V T+C +M    + 
Sbjct: 161 KGVNISPNVLTFNLVIKTMCKV---GLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKA 217

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI----PDS 200
            +++EAV   + MQ  G   +   FN L++ LCK  ++ +  ++ D M   F+    P+ 
Sbjct: 218 DRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNM---FLKGCAPNE 274

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+ L+ G      L +A  +   MV + C P++VTYG +++ L K GR  +   ++  
Sbjct: 275 VTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLAL 334

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M+        ++YS L+     E + ++A+  F EM       +  +Y+A+I   C+  K
Sbjct: 335 MEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGK 394

Query: 321 FKNVYRVLKDMNSKGVAPNSRT----------------------------------C-NI 345
                 VL +M +    PN+ T                                  C ++
Sbjct: 395 PDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSV 454

Query: 346 ILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++GL   G+  EA  V+ +M+ K C+ D   Y  MI      G +E A +++  M  + 
Sbjct: 455 LIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQE 514

Query: 405 --FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
               P + T+++L+N LC +  +S +  LL  M+++G  P
Sbjct: 515 PDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDP 554



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 206/452 (45%), Gaps = 50/452 (11%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           SS  S  A+ + K+I     S P +  + +  + GI   P I + +              
Sbjct: 2   SSNFSALAIPSTKTIETEPQSHP-LHRNASDREHGIEHDPPISDKI-------------- 46

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYA 142
           FK   K  +Y+     ++S+I++ A +  ++ +  +++ MR ++ + VE  F +I + Y 
Sbjct: 47  FKSGPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYG 106

Query: 143 RVQKVEEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201
           +    E+AV  F+ M  ++   + + +FN +L+ + +     +A E ++      +  +K
Sbjct: 107 KAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYN-----HVIGAK 161

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
             +I                          +P+++T+ +++  +CK G VD+A+ + + M
Sbjct: 162 GVNI--------------------------SPNVLTFNLVIKTMCKVGLVDDAVQMFRDM 195

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
             + C+P  + Y  L+      +RI++AV    EM+ +G       +N LI   CK    
Sbjct: 196 PVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDL 255

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
             V +++ +M  KG APN  T N +++GL  +G+ ++A  +  RM+   C  +  TY  +
Sbjct: 256 ARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTI 315

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I    + G      +V   M+ + +  + + +S LI+GL  +G   ++  L ++M  K  
Sbjct: 316 INGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKEC 375

Query: 441 RPSGETFGKLRKLLIKEGRED-VLKFLQEKMN 471
             +   +  +   L ++G+ D  L+ L E  N
Sbjct: 376 ELNTIVYSAVIDGLCRDGKPDEALEVLSEMTN 407


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 188/385 (48%), Gaps = 21/385 (5%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIM 138
           FF W    + + H  +++  M+E L + R   +  + + ++  +      L    F  ++
Sbjct: 87  FFDWVS-NKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLI 145

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-- 196
           R Y      +E+V  F  M++ G++ ++  FN LLS L K      A ++FD M+  +  
Sbjct: 146 RSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGV 205

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PDS T++ L+ G+ K+  +  A  IF++M    CNPD+VTY  ++D LC+AG+V  A  
Sbjct: 206 TPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHN 265

Query: 257 IVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           ++  M   +T   P    Y+ LV  Y ++  I++AV  F +M   G+  +   YN LI  
Sbjct: 266 VLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKG 325

Query: 315 FCKANKFKNVYRVLKDMNS--KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +A+++  +  +L   N      AP++ T NI++      G  D A +VF+ M+ +   
Sbjct: 326 LSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLH 385

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-------PSMHTFSVLINGLCDKGI 424
            D+ +Y+++I+  C   E ++A  ++  +  K  +       P    ++ +   LC  G 
Sbjct: 386 PDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGK 445

Query: 425 VSDSCVLLEDMIEKGIR--PSGETF 447
              +  +   ++++G++  PS +T 
Sbjct: 446 TKQAEKVFRQLMKRGVQDPPSYKTL 470



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 170/373 (45%), Gaps = 14/373 (3%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQK 146
           KQ     SV  ++S++  L K  +  +  DL + MR    +  +  TF  ++  + +   
Sbjct: 165 KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSM 224

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI---PDSKTY 203
           V+EA   F  M+ Y    ++  +N ++  LC++  V+ A  +   M  +     P+  +Y
Sbjct: 225 VDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSY 284

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + L+ G+     +  A  +F +M+  G  P+ VTY  ++  L +A R DE   I+   + 
Sbjct: 285 TTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGND 344

Query: 264 --TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
             T   P +  +++L+  +     ++ A+  F EM    +  D A Y+ LI   C  N+F
Sbjct: 345 AFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEF 404

Query: 322 KNVYRVLKDMNSKGV-------APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
                +  ++  K V        P +   N +   L   G+T +A +VFR+++K    D 
Sbjct: 405 DRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDP 464

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +Y  +I   C+ G+ + A+++   M  + F+P + T+ +LI+GL   G    +   L+ 
Sbjct: 465 PSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQR 524

Query: 435 MIEKGIRPSGETF 447
           M+     P   TF
Sbjct: 525 MLRSSYLPVATTF 537



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 187/464 (40%), Gaps = 82/464 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYT 153
           V  Y+++I+ L +  + +I  ++++ M  K      NV ++  ++R Y   Q+++EAV  
Sbjct: 244 VVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLV 303

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI---PDSKTYSILLEGW 210
           F+ M   G+  N   +N L+  L ++    + ++I     D F    PD+ T++IL++  
Sbjct: 304 FHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAH 363

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-------DS 263
               +L  A ++F+EM++   +PD  +Y +++  LC     D A  +   +         
Sbjct: 364 CDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGK 423

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
             C+P +  Y+ +        + + A   F ++ K G+  D   Y  LI   C+  KFK 
Sbjct: 424 DECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGV-QDPPSYKTLITGHCREGKFKP 482

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI---------------- 367
            Y +L  M  +   P+  T  ++++GL+  GE   A+   +RM+                
Sbjct: 483 AYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLA 542

Query: 368 --------------------KLCEADADTYTMMIKMFCQGGELEKAFKVWK--------- 398
                               K    + D  T ++++     + EKAF + +         
Sbjct: 543 ELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYDNGYLV 602

Query: 399 -------YMKLKRFIPSMHTF----------------SVLINGLCDKGIVSDSCVLLEDM 435
                  Y+   R +   HT                 + +I GLC     S++  L  ++
Sbjct: 603 KMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNEL 662

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLC 479
           +E G          LR  L   G+ + L+F+ ++M  L +   C
Sbjct: 663 VELGNHQQLSCHVVLRNALEAAGKWEELQFVSKRMATLRESDDC 706



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMD--STVC-RPTSFIYSVLVHTYGVENRIEDAVDTF 293
           ++ +M++ L +A  ++ A   + S++  S  C +     ++ L+ +YG     +++V  F
Sbjct: 102 SFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLF 161

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIG 352
             M++ GI   V  +N+L+    K  +    + +  +M  + GV P+S T N ++NG   
Sbjct: 162 QTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCK 221

Query: 353 RGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM--KLKRFIPSM 409
               DEA+R+F+ M +  C  D  TY  +I   C+ G+++ A  V   M  K     P++
Sbjct: 222 NSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNV 281

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
            +++ L+ G C K  + ++ ++  DM+ +G++P+  T+  L K L +  R D +K
Sbjct: 282 VSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIK 336


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 193/414 (46%), Gaps = 23/414 (5%)

Query: 58  GIRVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G  ++  I+  VL      G  +++ FFKW E   N++HS+++  +MI +LAK +Q++  
Sbjct: 35  GSNLTSTILNQVLLNLSLDGCCVSWAFFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTA 94

Query: 117 WDLVNAMRTKRML------------------NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            +L+  +  +  L                  N +    ++  YA  +  ++A+  F  M+
Sbjct: 95  QNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMR 154

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
            +G   +L A   LL++L K++      +++  M +   +P+   +++L+    K  ++ 
Sbjct: 155 VHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVE 214

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A ++  EM      PD+ TY  ++ + CK G   EALGI   M+     P    Y+ L+
Sbjct: 215 KAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI 274

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +  E R+ +A+  F E+  NG   +   Y  LI  +C+ N  +   R+ + M  +G+ 
Sbjct: 275 YGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLH 332

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P   T N IL  L   G+  +A R+   M  +  E D  T   +I  +C+ G++  A KV
Sbjct: 333 PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 392

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            K M      P   TF  LI+G C    V  +   L +M++ G  PS  T+  L
Sbjct: 393 KKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWL 446



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%), Gaps = 1/212 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  ++  Y RV  +EEA+    VM+  G+   +  +N +L  LC+   ++ A  + 
Sbjct: 299 NHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLL 358

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M +R + PD+ T + L+  + K  ++  A ++ ++M++ G  PD  T+  ++   CK 
Sbjct: 359 NEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKL 418

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             VD A   +  M      P+   YS LV +Y  ++  E  +    E+ + G+  D+++Y
Sbjct: 419 HEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVY 478

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
            ALI   CK +K ++  R+   M  KG+  +S
Sbjct: 479 RALIRRLCKIDKIESAERIFTLMQGKGMKGDS 510



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 40/351 (11%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
             ++  + A   ++ SLAK R   ++W +   M R   + N+  F +++    +   VE+
Sbjct: 156 HGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEK 215

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A    N M+   +  +L  +N L+S  CK     +A  I D M+   + PD  TY+ L+ 
Sbjct: 216 AEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIY 275

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ ++  +  A  +FRE+   G  P+ VTY  ++D  C+   ++EAL + + M+     P
Sbjct: 276 GFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHP 333

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----------------------------- 299
               Y+ ++     E +I+DA     EM +                              
Sbjct: 334 GVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVK 393

Query: 300 ------GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
                 G+  D   + ALI  FCK ++  +    L +M   G +P+  T + +++    +
Sbjct: 394 KKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQ 453

Query: 354 GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
              +   R+   +  K    D   Y  +I+  C+  ++E A +++  M+ K
Sbjct: 454 DNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 504



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 2/221 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFN 155
           V  Y+S++  L +  + +    L+N M  +++      C  ++  Y ++  +  A+    
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK 394

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M + G+  +   F  L+   CK   V  A+E +F+ +   F P   TYS L++ +    
Sbjct: 395 KMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQD 454

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N      +  E+   G   DI  Y  ++  LCK  +++ A  I   M     +  S +Y+
Sbjct: 455 NKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYT 514

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            L + Y    +   A D   EM+K  ++  + +Y     ++
Sbjct: 515 SLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASY 555


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 182/369 (49%), Gaps = 9/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++  + K+   +   +L++ M    +  +V  +  I+ +  +     +A Y F+
Sbjct: 256 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 315

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M + G+  N+  +N ++   C       AQ +   M +R I PD  T++ L+    K+ 
Sbjct: 316 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 375

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++  EM+     PD VTY  M+   CK  R D+A    K M   +  P    ++
Sbjct: 376 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFN 431

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y    R+++ +    E+ + G++A+   YN LI  FC+ +       + ++M S 
Sbjct: 432 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 491

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEK 392
           GV P++ TCNI+L G     + +EA  +F  +I++ + D DT  Y ++I   C+G ++++
Sbjct: 492 GVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDE 550

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A+ ++  + +    P + T++V+I+G C K  +SD+ VL   M + G  P   T+  L +
Sbjct: 551 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 610

Query: 453 LLIKEGRED 461
             +K G  D
Sbjct: 611 GCLKAGEID 619



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 178/384 (46%), Gaps = 18/384 (4%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF +  + + +  +V   + +I    ++ +  +   L   M  +R+ LN+ +F I++
Sbjct: 90  AIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
           + +    K+  ++ TF  + K G   ++  FN LL  LC    + +A  +F  M +    
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSL 208

Query: 196 --------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
                     P   T++ L+ G   +  +  A  +  +MV  G + D+VTYG +V+ +CK
Sbjct: 209 FDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCK 268

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G    AL ++  M+ T  +P   IYS ++     +    DA   F EM + GI  +V  
Sbjct: 269 MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT 328

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN +I  FC   ++ +  R+L+DM  + + P+  T N +++  +  G+  EA ++   M+
Sbjct: 329 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 388

Query: 368 KLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             C   D  TY  MI  FC+    + A  ++  M      P + TF+ +I+  C    V 
Sbjct: 389 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVD 444

Query: 427 DSCVLLEDMIEKGIRPSGETFGKL 450
           +   LL ++  +G+  +  T+  L
Sbjct: 445 EGMQLLREISRRGLVANTTTYNTL 468



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 179/377 (47%), Gaps = 10/377 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           ++ + +  V  Y ++I+ L K   +     L + M  K +  NV T+  ++  +    + 
Sbjct: 283 EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 342

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            +A      M +  +  ++  FN L+SA  K   + +A+++ D M  R I PD+ TY+ +
Sbjct: 343 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 402

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K      A+ +F  M     +PD+VT+  ++DV C+A RVDE + +++ +     
Sbjct: 403 IYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 458

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
              +  Y+ L+H +   + +  A D F EM  +G+  D    N L+  FC+  K +    
Sbjct: 459 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 518

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           + + +    +  ++   NII++G+    + DEA+ +F  + I   E D  TY +MI  FC
Sbjct: 519 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 578

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               +  A  ++  MK     P   T++ LI G    G +  S  L+ +M   G   SG+
Sbjct: 579 GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF--SGD 636

Query: 446 TFG-KLRKLLIKEGRED 461
            F  K+   LI +GR D
Sbjct: 637 AFTIKMVADLITDGRLD 653



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 159/327 (48%), Gaps = 17/327 (5%)

Query: 80  AFCFF-KWAEKQQ--------NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
            FC F +W++ Q+             V  ++++I +  K  +      L + M  + +  
Sbjct: 335 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 394

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  T+  ++  + +  + ++A + F++M     + ++  FN ++   C++K V +  ++ 
Sbjct: 395 DTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLL 450

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +  R  + ++ TY+ L+ G+ +  NL  A+++F+EM+  G  PD +T  I++   C+ 
Sbjct: 451 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCEN 510

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +++EAL + + +  +     +  Y++++H     +++++A D F  +  +G+  DV  Y
Sbjct: 511 EKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 570

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC  +   +   +   M   G  P++ T N ++ G +  GE D++  +   M +
Sbjct: 571 NVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM-R 629

Query: 369 LCEADADTYTM-MIKMFCQGGELEKAF 394
                 D +T+ M+      G L+K+F
Sbjct: 630 SNGFSGDAFTIKMVADLITDGRLDKSF 656


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 2/305 (0%)

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           E+    F  M + G   +L   N  +  + K+ +V K + IF+ +K   F+PD ++YSIL
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL 65

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  K         IF  M   G   D   Y  +VD  CK+G+VD+A   ++ M     
Sbjct: 66  IHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHV 125

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            PT   Y  ++      +R+++A   F E +  GI  +V +Y++LI  F K  +    Y 
Sbjct: 126 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 185

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +L++M  KG+APN  T N +++ L+   E +EA   F+ M ++ C  +  TY+++I   C
Sbjct: 186 ILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLC 245

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  +  KAF  W+ M+ +  +P++ T++ +I+GL   G ++D+C L E     G  P   
Sbjct: 246 RVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAA 305

Query: 446 TFGKL 450
           +F  L
Sbjct: 306 SFNAL 310



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 128/269 (47%), Gaps = 2/269 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           VR+Y  +I  L K  Q +    + +AM+ +   L+   +  ++  + +  KV++A     
Sbjct: 59  VRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALE 118

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M+   V   +A +  ++  L K   + +A  +F+  K + I  +   YS L++G+GK  
Sbjct: 119 EMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVG 178

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I  EM+  G  P++ T+  ++D L KA  ++EAL   +SM    C P ++ YS
Sbjct: 179 RIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYS 238

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L++      +   A   + EM+K G++ +V  Y  +I    K     +   + +   + 
Sbjct: 239 ILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKAN 298

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           G  P++ + N ++ G+       EAY VF
Sbjct: 299 GGIPDAASFNALIEGMSHANRAIEAYHVF 327



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 127/276 (46%), Gaps = 2/276 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++ I++    +  +  E    F+ M++ G   +  A+N ++   CKS  V KA E  
Sbjct: 58  DVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEAL 117

Query: 190 DCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + MK + +P +  TY  +++G  K   L  A  +F E    G   +++ Y  ++D   K 
Sbjct: 118 EEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 177

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA  I++ M      P  + ++ L+        I +A+  F  M++     +   Y
Sbjct: 178 GRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTY 237

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           + LI   C+  K+   +   ++M  +G+ PN  T   +++GL   G   +A  +F R   
Sbjct: 238 SILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKA 297

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
                DA ++  +I+         +A+ V++  +L+
Sbjct: 298 NGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLR 333



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 120/276 (43%), Gaps = 36/276 (13%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
             +IF+EM   GC PD+      +D + KAG V++   I + +      P    YS+L+H
Sbjct: 8   GHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIH 67

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 +  +    F  M++ G   D   YNA++  FCK+ K    Y  L++M  K V P
Sbjct: 68  GLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPP 127

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV- 396
              T   I++GL      DEAY +F     K  E +   Y+ +I  F + G +++A+ + 
Sbjct: 128 TVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLIL 187

Query: 397 ----------------------------------WKYMKLKRFIPSMHTFSVLINGLCDK 422
                                             ++ MK  +  P+ +T+S+LINGLC  
Sbjct: 188 EEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRV 247

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
              + + V  ++M ++G+ P+  T+  +   L K G
Sbjct: 248 QKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVG 283



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 2/266 (0%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           A KQ+ +    RAY+++++   K  +    ++ +  M+ K +   V T+  I+   A++ 
Sbjct: 84  AMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKID 143

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYS 204
           +++EA   F   +  G+  N+  ++ L+    K   + +A  I +  MK    P+  T++
Sbjct: 144 RLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWN 203

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L++   K   +  A   F+ M +  C+P+  TY I+++ LC+  + ++A    + M   
Sbjct: 204 SLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQ 263

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ ++        I DA   F   + NG + D A +NALI     AN+    
Sbjct: 264 GLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEA 323

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGL 350
           Y V ++   +G   N + C  +L+ L
Sbjct: 324 YHVFEETRLRGCRINVKACISLLDAL 349



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 1/190 (0%)

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           +  R ED    F EM + G   D+ + N  +    KA   +    + +D+   G  P+ R
Sbjct: 1   MHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVR 60

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYM 400
           + +I+++GL   G+  E   +F  M +   A DA  Y  ++  FC+ G+++KA++  + M
Sbjct: 61  SYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEM 120

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           K+K   P++ T+  +I+GL     + ++ +L E+   KGI  +   +  L     K GR 
Sbjct: 121 KVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRI 180

Query: 461 DVLKFLQEKM 470
           D    + E+M
Sbjct: 181 DEAYLILEEM 190



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 94/200 (47%), Gaps = 3/200 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           GI ++  +   +++ F   G +   +    E  ++    +V  ++S++++L K  +    
Sbjct: 159 GIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEA 218

Query: 117 WDLVNAMRT-KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
                +M+  K   N  T+ I++    RVQK  +A   +  MQK G+  N+  +  ++S 
Sbjct: 219 LICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISG 278

Query: 176 LCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L K  N+  A  +F+  K +  IPD+ +++ L+EG         A  +F E    GC  +
Sbjct: 279 LAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRIN 338

Query: 235 IVTYGIMVDVLCKAGRVDEA 254
           +     ++D L KA  +++A
Sbjct: 339 VKACISLLDALNKAECIEQA 358


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTF 137

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+  ++  FN LL  LC    V +A  +F  M +    P+  T++ L+ G  ++
Sbjct: 138 GKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCRE 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFI 272
             +  A  +   M++ G  P  +TYG +VD +CK G    AL +++ M+  +   P   I
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS ++ +   + R  DA + F EM++ GI  D+  YN++I  FC + ++ +  ++L++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + ++P+  T N ++N  +  G+  EA  ++  M+ +    +  TY+ MI  FC+   L+
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLD 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  ++  M  K   P++ TF+ LI+G C    + D   LL +M E G+     T+  L
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 13/345 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  I+    +  +  +A   F  MQ+ G+  +L  +N ++   C S     A+++ 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R I PD  TY+ L+  + K+     A E++ EM+  G  P+ +TY  M+D  CK 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+D A  +   M +  C P    ++ L+  Y    RI+D ++   EM + G++AD   Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  F           +L++M S G+ P+  TC+ +L+GL   G+  +A  +F+ M K
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 369 L------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
                         E D  TY ++I      G+  +A ++++ M  +  +P   T+S +I
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +GLC +  + ++  + + M  K   P+  TF  L     K GR D
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+SL K  ++    +L   M+ K +  ++ T+  ++  +    +  +A    
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M +  ++ ++  +N L++A  K     +A+E++D M  R  IP++ TYS +++G+ K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   GC+P+++T+  ++D  C A R+D+ + ++  M  T     +  Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H + +   +  A+D   EM  +G+  D+   + L+   C   K K+   + K M  
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 334 K-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
                       GV P+ +T NI+++GLI  G+  EA  ++  M  +    D  TY+ MI
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   L++A +++  M  K F P++ TF+ LING C  G V D   L  +M  +GI 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 442 PSGETF 447
            +  T+
Sbjct: 614 ANAITY 619



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 14/344 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  ++ EAV   + M + G+      +  ++  +CK  +   A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    IP+   YS +++   KD     A+ +F EM + G  PD+ TY  M+   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +GR  +A  +++ M      P    Y+ L++ +  E +  +A + + EM   GI+ +   
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+++I  FCK N+      +   M +KG +PN  T N +++G  G    D+   +   M 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +    AD  TY  +I  F   G+L  A  + + M      P + T   L++GLCD G + 
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 427 DSCVLLEDMIEK-----------GIRPSGETFGKLRKLLIKEGR 459
           D+  + + M +            G+ P  +T+  L   LI EG+
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 13/281 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I+     ++     +L++ M  T  + +  T+  ++  +  V  +  A+     M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK------------DRFIPDSKTYSI 205
              G+  ++   + LL  LC +  ++ A E+F  M+            +   PD +TY+I
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P    ++ L++ Y    R++D ++ F EM + GI+A+   Y  LI  F K        
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            + ++M S GV P++ T   +L GL  + E   A  +  ++
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 3/329 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-D 199
           +  ++ +E+A+  F+ M +     ++  F  L+  + + +       ++  M+ + I  D
Sbjct: 54  FHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCD 113

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +++IL++ +     LP A   F ++   G +PD+VT+  ++  LC   RV EAL +  
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M  T CRP    ++ L++    E RI +AV     M ++G+      Y  ++   CK  
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 320 KFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
              +   +L+ M     + PN    + I++ L   G   +A  +F  M  K    D  TY
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             MI  FC  G    A ++ + M  ++  P + T++ LIN    +G   ++  L ++M+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           +GI P+  T+  +     K+ R D  + +
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 3/268 (1%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +M+ +   P +V +  ++ V+ +  R D  + + + M+   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R   + +++L+  +   +++  A+ TF ++ K G+  DV  +N L+   C  ++     
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
            +   M      PN  T   ++NGL   G   EA  +  RM++   +    TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 385 CQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M ++   IP++  +S +I+ LC  G  SD+  L  +M EKGI P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  D  + LQE +
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEML 317



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 24/219 (10%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L+AA  + + M+SS   P +V  DT LD  G+  + ++ +D LE F+          + +
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKL-KDALEMFK--------VMQKS 494

Query: 88  EKQQNYEH-------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
           +K  +  H        V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++ 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIP 198
              +  +++EA   F+ M     + N+  F  L++  CK+  V    E+F  M  R  + 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++ TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 181/388 (46%), Gaps = 38/388 (9%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVY 152
           + ++  + ++I  L K  ++    +L + M  +    +V T+  I+    ++ +   A  
Sbjct: 158 QPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAG 217

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
               M + G   ++  ++ L+ +LCK + V +A +IF  MK + I P   +Y+ L++G  
Sbjct: 218 LIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLC 277

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD--------- 262
                  A  +  EM      PDIVT+ +++D+ CK G V EA G++K+M          
Sbjct: 278 SFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVI 337

Query: 263 --------------------------STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
                                     +  C+P  F YS+L++ Y +  RI++A   F EM
Sbjct: 338 TYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEM 397

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              G+  +   Y  LI AFC+  K +    + KDM++ G  P+  T +++L G   +G  
Sbjct: 398 IHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYL 457

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +A+R+FR M     + +   YT++I   C+ G L  A K++  + +    P +  ++ +
Sbjct: 458 GKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTI 517

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           INGLC +G++ ++      M E G  P+
Sbjct: 518 INGLCKEGLLDEALEAFRKMEEDGCPPN 545



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 180/366 (49%), Gaps = 10/366 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-----NVETFCIIMRKYARVQKVEEAVYTF 154
           ++ ++ ++ ++RQY   +D V ++  +  L     N  T  I++  +  +Q V+      
Sbjct: 93  FNKLLSAIVRMRQY---YDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVL 149

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+   +  F  L++ LCK+    +A E+FD M  R   PD  TY+ ++ G  K 
Sbjct: 150 AKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKM 209

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  + ++M + GC PD+VTY  ++D LCK   V+EAL I   M +    PT   Y
Sbjct: 210 GETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSY 269

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+      +R ++A     EM    I+ D+  ++ LI  FCK         VLK M  
Sbjct: 270 TSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTE 329

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            GV PN  T N +++G   + E  EA ++F  MI + C+ D  +Y+++I  +C    +++
Sbjct: 330 MGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDE 389

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M  +   P+  +++ LI+  C  G + ++  L +DM   G  P   T+  L +
Sbjct: 390 AKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLE 449

Query: 453 LLIKEG 458
              K+G
Sbjct: 450 GFCKQG 455



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 158/353 (44%), Gaps = 38/353 (10%)

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK--------------------SKNVRK 184
           + +++A+ +FN M        +  FN LLSA+ +                    S N   
Sbjct: 69  RNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCT 128

Query: 185 AQEIFDC-----------------MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
              + +C                 +K    P   T++ L+ G  K     +A E+F +MV
Sbjct: 129 LNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMV 188

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC PD+ TY  +++ LCK G    A G++K M    C+P    YS L+ +   +  + 
Sbjct: 189 ARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVN 248

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A+D F  M+  GI   V  Y +LI   C  +++K    +L +M S  + P+  T ++++
Sbjct: 249 EALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +     G   EA  V + M ++  E +  TY  ++  +    E+ +A K++  M  +   
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCK 368

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P + ++S+LING C    + ++  L  +MI +G+ P+  ++  L     + G+
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGK 421



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 118/214 (55%), Gaps = 1/214 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++ I++  Y  V++++EA   FN M   G+T N  ++  L+ A C+   +R+A+E+F
Sbjct: 370 DVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELF 429

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D   + ++PD  TYS+LLEG+ K   L +A  +FR M  T   P++V Y I++D +CK+
Sbjct: 430 KDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKS 489

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A  +   +     +P   IY+ +++    E  +++A++ F +ME++G   +   Y
Sbjct: 490 GNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSY 549

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           N +I  F +        +++ +M  KG   +  T
Sbjct: 550 NVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 37/315 (11%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +    +V +Y S+I+ L    +++    ++N M +  ++ ++ TF +++  + +   V
Sbjct: 258 KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNV 317

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA      M + GV  N+  +N L+        V +A+++FD M  R   PD  +YSIL
Sbjct: 318 LEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSIL 377

Query: 207 LEGW-------------------GKDPN----------------LPRAREIFREMVDTGC 231
           + G+                   G  PN                L  ARE+F++M   G 
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGY 437

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD+ TY ++++  CK G + +A  + ++M  T  +P   +Y++L+ +      +  A  
Sbjct: 438 LPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARK 497

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F E+  +G+  DV +Y  +I   CK           + M   G  PN  + N+I+ G +
Sbjct: 498 LFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFL 557

Query: 352 GRGETDEAYRVFRRM 366
              +   A ++   M
Sbjct: 558 QHKDESRAVQLIGEM 572



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 121/260 (46%), Gaps = 6/260 (2%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGIVKSMDSTVCRPTSFIY 273
           N+  A   F  M+     P I+ +  ++  + +  +  D  + + K M+     P +   
Sbjct: 70  NIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTL 129

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L++ + +   ++       ++ K G+   +  +  LI   CKA +F     +  DM +
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVA 189

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +G  P+  T   I+NGL   GET  A  + ++M ++ C+ D  TY+ +I   C+   + +
Sbjct: 190 RGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNE 249

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++ YMK K   P++ +++ LI GLC      ++  +L +M    I P   TF  L  
Sbjct: 250 ALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLID 309

Query: 453 LLIKEGR----EDVLKFLQE 468
           +  KEG     + VLK + E
Sbjct: 310 IFCKEGNVLEAQGVLKTMTE 329



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN-VYRVLKDMNSKGVAPNSRTCN 344
           I+DA+ +F  M     L  +  +N L+ A  +  ++ + V  + K M   G++PN+ T N
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           I++N        D  + V  ++IKL                                   
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKL----------------------------------G 156

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P++ TF+ LINGLC  G  + +  L +DM+ +G +P   T+  +   L K G      
Sbjct: 157 LQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAA 216

Query: 465 FLQEKMNLLVKEP 477
            L +KM  +  +P
Sbjct: 217 GLIKKMGEVGCQP 229


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 193/413 (46%), Gaps = 7/413 (1%)

Query: 54  LDQSGIRVSPEIV--EDVLEKFRNAG-TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + + G   SP +V    V+  F   G T   C       +Q  +  V  Y+ +I++L K 
Sbjct: 254 MAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKA 313

Query: 111 RQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           R       ++  M T     +  T+  ++  YA + +++EA   F  M+  G+  N+   
Sbjct: 314 RAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVIC 373

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N  L++LCK    ++A EIFD M  +   PD  +Y  LL G+  +        +F  M  
Sbjct: 374 NSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKS 433

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G   D   + I++    K G VD+A+ I   M      P    YS ++  +    R+ D
Sbjct: 434 NGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTD 493

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIIL 347
           A++ F +M   GI  + A+Y+++I  FC          ++ +M +KG+  P+    N ++
Sbjct: 494 AMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVI 553

Query: 348 NGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           N L   G   +A+ +F  +  + E  D  T+T +I  +C  G+++KAFK+   M++    
Sbjct: 554 NSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVE 613

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             + T+S L++G    G ++D   L  +M  KG++P+  T+G +   L + GR
Sbjct: 614 TDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 184/406 (45%), Gaps = 42/406 (10%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y  +++   + R+  +   L    +RT   ++  T   +++      + EEAV   
Sbjct: 156 TVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVL 215

Query: 155 -NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGW 210
            + M + G   N+ +++ +L  LC +   ++A ++F  M        P+   Y+ ++ G+
Sbjct: 216 LHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGF 275

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K+    +A  +F EM   G  PD+VTY +++D LCKA  +D+A  +++ M +   +P +
Sbjct: 276 FKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDT 335

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK---------- 320
             Y+ ++H Y    R+++A   F +M+  G++ ++ + N+ + + CK  +          
Sbjct: 336 VTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDS 395

Query: 321 -------------------------FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
                                    F ++  +   M S G+A + R  NI+++    RG 
Sbjct: 396 MTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGM 455

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            D+A  +F  M +     D  TY+ +I  F + G L  A + +  M  +   P+   +  
Sbjct: 456 VDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHS 515

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGI-RPSGETFGKLRKLLIKEGR 459
           +I G C  G +  +  L+ +MI KGI RP    F  +   L K+GR
Sbjct: 516 IIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGR 561



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 154/332 (46%), Gaps = 3/332 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++  ++R+ ++ +A+  FN M   G+  N A ++ ++   C    + KA+E+ 
Sbjct: 474 DVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELV 533

Query: 190 DCMKDRFIP--DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M ++ IP  D   ++ ++    KD  +  A +IF  + D G  PD++T+  ++D  C 
Sbjct: 534 SEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCL 593

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G++D+A  I+ +M+          YS L+  Y    RI D +  F EM++ G+  +   
Sbjct: 594 VGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVT 653

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  ++    +A +     +   +M   G         IIL GL      DEA  +F+++ 
Sbjct: 654 YGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLG 713

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            +  +        MI    +    E+A +++  +     +P+  T+ V+I  L   G V 
Sbjct: 714 TMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVE 773

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           D+  +   M + GI P      ++ ++L+++G
Sbjct: 774 DANNMFSSMEKSGIVPGSRLLNRIIRMLLEKG 805



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 168/379 (44%), Gaps = 9/379 (2%)

Query: 52  TALDQSGIRVSPEIV--EDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLA 108
           T + Q G  VSP++V    V+  F   G L     K+ +   +  + +   YHS+I+   
Sbjct: 464 TEMQQQG--VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFC 521

Query: 109 KIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
                    +LV+ M  K +   ++  F  ++    +  +V +A   F+++   G   ++
Sbjct: 522 MHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDV 581

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
             F  L+   C    + KA +I D M+   +  D  TYS LL+G+ K+  +     +FRE
Sbjct: 582 ITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFRE 641

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M   G  P+ VTYGIM+  L +AGR   A      M  +    T  IY +++      N 
Sbjct: 642 MQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNC 701

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++A+  F ++    +   + + N +I A  K  + +    +   +++ G+ PN  T  +
Sbjct: 702 ADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGV 761

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++  L+  G  ++A  +F  M K      +     +I+M  + GE+ KA      +  KR
Sbjct: 762 MIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKR 821

Query: 405 FIPSMHTFSVLINGLCDKG 423
            +    T S++++    KG
Sbjct: 822 ILLEASTTSLMLSLFSRKG 840



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 152/318 (47%), Gaps = 16/318 (5%)

Query: 100 YHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           ++S+I SL K   +     ++DLV  +  +   +V TF  ++  Y  V K+++A    + 
Sbjct: 549 FNSVINSLCKDGRVMDAHDIFDLVTDIGERP--DVITFTSLIDGYCLVGKMDKAFKILDA 606

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M+  GV  ++  ++ LL    K+  +     +F  M+ + + P++ TY I+L G  +   
Sbjct: 607 MEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              AR+ F EM+++G    +  YGI++  LC+    DEA+ + + + +   + +  I + 
Sbjct: 667 TVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNT 726

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +++      R E+A + F  +  +G+L + + Y  +I    K    ++   +   M   G
Sbjct: 727 MINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSG 786

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
           + P SR  N I+  L+ +GE  +A     ++  K    +A T ++M+ +F + G      
Sbjct: 787 IVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKG------ 840

Query: 395 KVWKYMKLKRFIPSMHTF 412
              KY +  + +P+ + F
Sbjct: 841 ---KYHEDMKLLPAKYNF 855



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 4/177 (2%)

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF- 363
           V  Y+ L+   C+A +      +   +   G+  +  T + +L  L     T+EA  V  
Sbjct: 157 VHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLL 216

Query: 364 RRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLINGLC 420
            RM +L C  +  +Y++++K  C     ++A  +++ M  +     P++  ++ +I+G  
Sbjct: 217 HRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFF 276

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            +G    +C L  +M  +G++P   T+  +   L K    D  + +  +M     +P
Sbjct: 277 KEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQP 333


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 186/375 (49%), Gaps = 5/375 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K  N   +V +++ +I+S+ K+       +L   M  ++ + +  T+C +M    +V ++
Sbjct: 173 KDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRI 232

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           +EAV   + MQ  G   + A FN L++ LCK  +  +  ++ D M  +  +P+  TY+ L
Sbjct: 233 DEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTL 292

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G      L +A  +   MV + C P+ VTYG +++ L K GR  +   ++  M+    
Sbjct: 293 IHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGY 352

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
               ++YSVLV     E + E+A+  F E    G   +  +Y+AL+   C+  K     +
Sbjct: 353 IVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMK 412

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +L +M  KG APN+ T + ++ G    G + +A  V++ M K+ C  +   Y+++I   C
Sbjct: 413 ILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLC 472

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM--IEKGIRPS 443
           + G++ +A  VW  M      P +  +S +I GLCD G V ++  L  +M  +E   +P 
Sbjct: 473 KDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPD 532

Query: 444 GETFGKLRKLLIKEG 458
             T+  L   L K+ 
Sbjct: 533 VITYNILFNALCKQS 547



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 185/389 (47%), Gaps = 10/389 (2%)

Query: 96  SVRAYHSMIESLAKI----RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +V++++S++  + +     R  +    +V A     + NV +F +I++   ++  V+ A+
Sbjct: 142 TVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAI 201

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGW 210
             F  M       +   +  L+  LCK   + +A  + D M+ +   P   T+++L+ G 
Sbjct: 202 ELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGL 261

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K  +  R  ++   M   GC P+ VTY  ++  LC  G++D+AL ++  M S+ C P  
Sbjct: 262 CKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNE 321

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y  +++    + R  D     + ME+ G + +  +Y+ L+    K  K +   R+ K+
Sbjct: 322 VTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKE 381

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
              KG   N+   + +++GL    + DEA ++   M  K C  +A T++ ++K F + G 
Sbjct: 382 SMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGN 441

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
             KA +VWK M       +   +SVLI+GLC  G V ++ ++   M+  G RP    +  
Sbjct: 442 SHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSS 501

Query: 450 LRKLLIKEGR-EDVLKFLQEKMNLLVKEP 477
           + + L   G  E+ LK   E   +L  EP
Sbjct: 502 MIQGLCDAGSVEEALKLYNE---MLCLEP 527



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 154/314 (49%), Gaps = 11/314 (3%)

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLP-RAREIFR 224
           + F  L+     S +    +++ + M+ +  +   K++ ++ + +GK  +LP +A E+F 
Sbjct: 73  STFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGK-AHLPNKAIELFY 131

Query: 225 EM-VDTGCNPDIVTYGIMVDVLCKAGRVDEAL----GIVKSMDSTVCRPTSFIYSVLVHT 279
            M  +  C P + ++  +++V+ +AG  D AL     +V + D  +  P    +++++ +
Sbjct: 132 RMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNI-LPNVLSFNLIIKS 190

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                 +++A++ F EM     + D   Y  L+   CK ++      +L +M  +G  P+
Sbjct: 191 MCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPS 250

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T N+++NGL  +G+     ++   M +K C  +  TY  +I   C  G+L+KA  +  
Sbjct: 251 PATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLD 310

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M   + +P+  T+  +INGL  +G   D   +L  M E+G   +   +  L   L KEG
Sbjct: 311 RMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEG 370

Query: 459 R-EDVLKFLQEKMN 471
           + E+ ++  +E M+
Sbjct: 371 KSEEAMRLFKESMD 384



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           ++N   + +++    +  K EEA+  F      G   N   ++ L+  LC+ +   +A +
Sbjct: 353 IVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMK 412

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           I   M D+   P++ T+S L++G+ +  N  +A E++++M    C  + V Y +++  LC
Sbjct: 413 ILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLC 472

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM---EKNGILA 303
           K G+V EA+ +   M +T CRP    YS ++        +E+A+  + EM   E +    
Sbjct: 473 KDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDS-QP 531

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           DV  YN L  A CK +       +L  M  +G  P+  TCNI L  L
Sbjct: 532 DVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRML 578



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--- 190
           + +++    +  KV EA+  +  M   G   ++ A++ ++  LC + +V +A ++++   
Sbjct: 464 YSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEML 523

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
           C++    PD  TY+IL     K  ++ RA ++   M+D GC+PD+VT  I + +L    +
Sbjct: 524 CLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRML--REK 581

Query: 251 VDEALGIVKSMDSTVCR 267
           +D      K +D  V R
Sbjct: 582 LDPPQDGAKFLDELVVR 598


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 177/363 (48%), Gaps = 5/363 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   D++  MR +  +  N  T+  ++  + +V +V+EAV  F+ M
Sbjct: 75  YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM 134

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V      +N L+   C    +  A    D M +R +  +  TY++L+     D  
Sbjct: 135 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 194

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E+  EM   G  PD+ TY I+++  CK G V +AL I ++M     R T   Y+ 
Sbjct: 195 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTS 254

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++    + ++++    F E  + GI  D+ +YNALI +   +      + ++ +M  K 
Sbjct: 255 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 314

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           +AP+  T N ++ GL   G  DEA ++   M K   + D  TY  +I  +   G+++ A 
Sbjct: 315 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDAL 374

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M  K F P++ T++ LI GLC  G   D+  ++++M+E GI P   T+  L + L
Sbjct: 375 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434

Query: 455 IKE 457
             E
Sbjct: 435 TTE 437



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 159/336 (47%), Gaps = 4/336 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           N  T+  ++  +    +V+ A+     M ++ G+  N   +  ++S  CK   V +A ++
Sbjct: 71  NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKV 130

Query: 189 FDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           FD M  K    P++  Y+ L+ G+     L  A      MV+ G    + TY ++V  L 
Sbjct: 131 FDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALF 190

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             GR  EA  +V+ M      P  F Y++L++ +  E  ++ A++ F  M + G+ A V 
Sbjct: 191 MDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVV 250

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y +LI A  K  + +   ++  +   +G+ P+    N ++N     G  D A+ +   M
Sbjct: 251 TYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 310

Query: 367 IKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            K   A  D TY  +++  C  G +++A K+   M  +   P + T++ LI+G   KG V
Sbjct: 311 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 370

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            D+  +  +M+ KG  P+  T+  L + L K G+ D
Sbjct: 371 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 406



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 12/290 (4%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M+   +  + A+ + LLSAL  +     A  +F D  + R    + T++I+L        
Sbjct: 1   MKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRHLCSAGK 56

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYS 274
             RA E+ R+M      P+ VTY  ++   C  GRV  AL I++ M +     P  + Y 
Sbjct: 57  PARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG 112

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            ++  +    R+++AV  F EM   G +  +  MYNALIG +C   K          M  
Sbjct: 113 TVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE 172

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           +GVA    T N++++ L   G   EAY +   M  K    D  TY ++I   C+ G ++K
Sbjct: 173 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKK 232

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           A ++++ M  +    ++ T++ LI  L  KG V ++  L ++ + +GIRP
Sbjct: 233 ALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRP 282



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 2/262 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    +    ++LV  M  K +  +V T+ I++  + +   V++A+  F
Sbjct: 178 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 237

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + GV   +  +  L+ AL K   V++  ++FD    R I PD   Y+ L+      
Sbjct: 238 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 297

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ RA EI  EM      PD VTY  ++  LC  GRVDEA  ++  M     +P    Y
Sbjct: 298 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY 357

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y ++  ++DA+    EM   G    +  YNALI   CK  +  +   ++K+M  
Sbjct: 358 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 417

Query: 334 KGVAPNSRTCNIILNGLIGRGE 355
            G+ P+  T   ++ GL    E
Sbjct: 418 NGITPDDSTYISLIEGLTTEDE 439



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            T+ IM+  LC AG+   AL +++ M     RP +  Y+ ++  +    R++ A+D   E
Sbjct: 42  TTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMRE 97

Query: 296 M-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGR 353
           M E+ GI  +   Y  +I  +CK  +     +V  +M +KG V P +   N ++ G   +
Sbjct: 98  MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 157

Query: 354 GETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G+ D A     RM++   A    TY +++      G   +A+++ + M  K   P + T+
Sbjct: 158 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 217

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           ++LING C +G V  +  + E+M  +G+R +  T+  L   L K+G+
Sbjct: 218 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQ 264


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 182/369 (49%), Gaps = 9/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++  + K+   +   +L++ M    +  +V  +  I+ +  +     +A Y F+
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 320

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M + G+  N+  +N ++   C       AQ +   M +R I PD  T++ L+    K+ 
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++  EM+     PD VTY  M+   CK  R D+A    K M   +  P    ++
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFN 436

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y    R+++ +    E+ + G++A+   YN LI  FC+ +       + ++M S 
Sbjct: 437 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEK 392
           GV P++ TCNI+L G     + +EA  +F  +I++ + D DT  Y ++I   C+G ++++
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDE 555

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A+ ++  + +    P + T++V+I+G C K  +SD+ VL   M + G  P   T+  L +
Sbjct: 556 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615

Query: 453 LLIKEGRED 461
             +K G  D
Sbjct: 616 GCLKAGEID 624



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 178/389 (45%), Gaps = 23/389 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF +  + + +  +V   + +I    ++ +  +   L   M  +R+ LN+ +F I++
Sbjct: 90  AIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
           + +    K+  ++ TF  + K G   ++  FN LL  LC    + +A  +F  M +    
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208

Query: 196 -------------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                          P   T++ L+ G   +  +  A  +  +MV  G + D+VTYG +V
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + +CK G    AL ++  M+ T  +P   IYS ++     +    DA   F EM + GI 
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 328

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            +V  YN +I  FC   ++ +  R+L+DM  + + P+  T N +++  +  G+  EA ++
Sbjct: 329 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388

Query: 363 FRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M+  C   D  TY  MI  FC+    + A  ++  M      P + TF+ +I+  C 
Sbjct: 389 CDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCR 444

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
              V +   LL ++  +G+  +  T+  L
Sbjct: 445 AKRVDEGMQLLREISRRGLVANTTTYNTL 473



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 179/379 (47%), Gaps = 8/379 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I+ L K   +     L + M  K +  NV T+  ++  +    +  +A     
Sbjct: 296 VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLR 355

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M +  +  ++  FN L+SA  K   + +A+++ D M  R I PD+ TY+ ++ G+ K  
Sbjct: 356 DMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHN 415

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A+ +F    D   +PD+VT+  ++DV C+A RVDE + +++ +        +  Y+
Sbjct: 416 RFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYN 471

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H +   + +  A D F EM  +G+  D    N L+  FC+  K +    + + +   
Sbjct: 472 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
            +  ++   NII++G+    + DEA+ +F  + I   E D  TY +MI  FC    +  A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             ++  MK     P   T++ LI G    G +  S  L+ +M   G      T     ++
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEI 651

Query: 454 LIKEGREDVLK-FLQEKMN 471
           + +   E++++ +L+ K+N
Sbjct: 652 ICRVSDEEIIENYLRPKIN 670



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           NR + A+  + +ME   I  ++  +N LI  FC  +K          +   G  P+  T 
Sbjct: 120 NRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTF 179

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           N +L+GL       EA  +F  M+                  + G LE A  ++  M   
Sbjct: 180 NTLLHGLCLEDRISEALALFGYMV------------------ETGFLE-AVALFDQMVEI 220

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
              P + TF+ LINGLC +G V ++  L+  M+ KG+     T+G +   + K G
Sbjct: 221 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMG 275


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 182/369 (49%), Gaps = 9/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++  + K+   +   +L++ M    +  +V  +  I+ +  +     +A Y F+
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 320

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M + G+  N+  +N ++   C       AQ +   M +R I PD  T++ L+    K+ 
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++  EM+     PD VTY  M+   CK  R D+A    K M   +  P    ++
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFN 436

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y    R+++ +    E+ + G++A+   YN LI  FC+ +       + ++M S 
Sbjct: 437 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 496

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEK 392
           GV P++ TCNI+L G     + +EA  +F  +I++ + D DT  Y ++I   C+G ++++
Sbjct: 497 GVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDE 555

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A+ ++  + +    P + T++V+I+G C K  +SD+ VL   M + G  P   T+  L +
Sbjct: 556 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615

Query: 453 LLIKEGRED 461
             +K G  D
Sbjct: 616 GCLKAGEID 624



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 178/389 (45%), Gaps = 23/389 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF +  + + +  +V   + +I    ++ +  +   L   M  +R+ LN+ +F I++
Sbjct: 90  AIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
           + +    K+  ++ TF  + K G   ++  FN LL  LC    + +A  +F  M +    
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208

Query: 196 -------------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                          P   T++ L+ G   +  +  A  +  +MV  G + D+VTYG +V
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + +CK G    AL ++  M+ T  +P   IYS ++     +    DA   F EM + GI 
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 328

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            +V  YN +I  FC   ++ +  R+L+DM  + + P+  T N +++  +  G+  EA ++
Sbjct: 329 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388

Query: 363 FRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M+  C   D  TY  MI  FC+    + A  ++  M      P + TF+ +I+  C 
Sbjct: 389 CDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCR 444

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
              V +   LL ++  +G+  +  T+  L
Sbjct: 445 AKRVDEGMQLLREISRRGLVANTTTYNTL 473



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 179/377 (47%), Gaps = 10/377 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           ++ + +  V  Y ++I+ L K   +     L + M  K +  NV T+  ++  +    + 
Sbjct: 288 EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 347

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            +A      M +  +  ++  FN L+SA  K   + +A+++ D M  R I PD+ TY+ +
Sbjct: 348 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 407

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K      A+ +F  M     +PD+VT+  ++DV C+A RVDE + +++ +     
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
              +  Y+ L+H +   + +  A D F EM  +G+  D    N L+  FC+  K +    
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           + + +    +  ++   NII++G+    + DEA+ +F  + I   E D  TY +MI  FC
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               +  A  ++  MK     P   T++ LI G    G +  S  L+ +M   G   SG+
Sbjct: 584 GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF--SGD 641

Query: 446 TFG-KLRKLLIKEGRED 461
            F  K+   LI +GR D
Sbjct: 642 AFTIKMVADLITDGRLD 658



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 159/327 (48%), Gaps = 17/327 (5%)

Query: 80  AFCFF-KWAEKQQ--------NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
            FC F +W++ Q+             V  ++++I +  K  +      L + M  + +  
Sbjct: 340 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 399

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  T+  ++  + +  + ++A + F++M     + ++  FN ++   C++K V +  ++ 
Sbjct: 400 DTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLL 455

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +  R  + ++ TY+ L+ G+ +  NL  A+++F+EM+  G  PD +T  I++   C+ 
Sbjct: 456 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCEN 515

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +++EAL + + +  +     +  Y++++H     +++++A D F  +  +G+  DV  Y
Sbjct: 516 EKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 575

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC  +   +   +   M   G  P++ T N ++ G +  GE D++  +   M +
Sbjct: 576 NVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM-R 634

Query: 369 LCEADADTYTM-MIKMFCQGGELEKAF 394
                 D +T+ M+      G L+K+F
Sbjct: 635 SNGFSGDAFTIKMVADLITDGRLDKSF 661


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 2/313 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DC 191
           T+  ++  Y R   +EEA    N M   G+  +L  +N +++ LCK     +A+ I  + 
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +     PD+ TY+ LL    +  N   A+EIF EM+  G  PD+V++  ++ V  +   +
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+AL   + M      P + IY+VL+H Y     + +A+    EM + G + DV  YN +
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 182

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           +   CK     +  ++  +M  +G  P+  T   +++G    G   +A  +F  M +   
Sbjct: 183 LNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI 242

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D   Y  +I  FC+ GE+EKA ++W  M  ++  P+  T+ +LIN  C  G VS++  
Sbjct: 243 KPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFR 302

Query: 431 LLEDMIEKGIRPS 443
           L + MIEKGI+P+
Sbjct: 303 LWDVMIEKGIKPT 315



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 160/328 (48%), Gaps = 9/328 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           S+  Y+++I  L K  +Y     I+ +++N   +    +  T+  ++ +  R     EA 
Sbjct: 35  SLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSP---DTTTYNTLLVESCRRDNFSEAK 91

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW 210
             F  M + GV  +L +F+ L++   +++++ +A   F D  K   +PD+  Y++L+ G+
Sbjct: 92  EIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 151

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++ N+  A +I  EM++ GC  D++ Y  +++ LCK   + +A  +   M      P  
Sbjct: 152 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 211

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           + ++ L+H +  +  +  A+  F  M +  I  D+  YN LI  FCK  + +    +   
Sbjct: 212 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 271

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M S+ + PN  T  I++N     G   EA+R++  MI K  +    T   +IK +C+ G+
Sbjct: 272 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 331

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
             KA +    M  K   P   +++ LIN
Sbjct: 332 SSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q+N +  + AY+++I+   K+ + +   +L + M ++++  N  T+ I++  Y  V  V 
Sbjct: 239 QRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVS 298

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA   ++VM + G+   L   N ++   C+S +  KA E    M  + + PD  +Y+ L+
Sbjct: 299 EAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 190/381 (49%), Gaps = 9/381 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           A ++++  L + R +++ +     M  T   +N  +   ++  Y +++K   A     +M
Sbjct: 74  AGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALM 133

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
            K G   N+   N LL  LC++    KA  +   M+ +  +PD  +Y+ ++ G+ +   L
Sbjct: 134 LKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKEL 193

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+  EM  +GC+  +VT+GI++D  CKAG++DEA+G +K M          +Y+ L
Sbjct: 194 EKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +     ++     F E+ + G       YN LI  FCK  + K    + + M  +GV
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGV 313

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T   +++GL G G+T EA ++   MI K  E +A TY ++I   C+ G +  A +
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE 373

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRPSGETFGKLRKL 453
           + + MK +R  P   T+++L+ GLC KG + ++  LL  M++      P   ++  L   
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHG 433

Query: 454 LIKEGR----EDVLKFLQEKM 470
           L KE R     D+   L EK+
Sbjct: 434 LCKENRLHQALDIYDLLVEKL 454



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 186/381 (48%), Gaps = 9/381 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y+++I    + ++ +   +L N M+      ++ T+ I++  + +  K++EA+    
Sbjct: 177 VFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLK 236

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDP 214
            M+  G+  +L  +  L+   C    + + + +FD + +R   P + TY+ L+ G+ K  
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A EIF  M++ G  P++ TY  ++D LC  G+  EAL ++  M      P +  Y+
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYN 356

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF----KNVYRVLKD 330
           ++++    +  + DAV+    M+K     D   YN L+G  C         K +Y +LKD
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKD 416

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
             S    P+  + N +++GL       +A  ++  ++ KL   D  T  +++    + G+
Sbjct: 417 --SSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGD 474

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + KA ++WK +   + + +  T++ +I+G C  G+++ +  LL  M    ++PS   +  
Sbjct: 475 VNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC 534

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           L   L KEG  D    L E+M
Sbjct: 535 LLSSLCKEGSLDQAWRLFEEM 555



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 41/378 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++R + ++ +++EA   F  M + GV  N+  + GL+  LC     ++A ++ + M
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 193 --KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
             KD   P++ TY+I++    KD  +  A EI   M      PD +TY I++  LC  G 
Sbjct: 344 IEKDE-EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402

Query: 251 VDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF-LEMEKNG------- 300
           +DEA  ++  M  DS+   P    Y+ L+H    ENR+  A+D + L +EK G       
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTT 462

Query: 301 ---------------------------ILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
                                      I+ +   Y A+I  FCK         +L  M  
Sbjct: 463 NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRV 522

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEK 392
             + P+    N +L+ L   G  D+A+R+F  M +     D  ++ +MI    + G+++ 
Sbjct: 523 SELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKS 582

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +   M      P + T+S LIN     G + ++    + M++ G  P       + K
Sbjct: 583 AESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK 642

Query: 453 LLIKEGREDVLKFLQEKM 470
             I +G  D L  L +K+
Sbjct: 643 YCISQGETDKLTELVKKL 660



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 162/338 (47%), Gaps = 7/338 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKV 147
           +++ E +   Y+ +I  L K        ++V  M+ +R    N+ T+ I++        +
Sbjct: 345 EKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNI-TYNILLGGLCAKGDL 403

Query: 148 EEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYS 204
           +EA     +M K       ++ ++N L+  LCK   + +A +I+D + ++    D  T +
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTN 463

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILL    K  ++ +A E+++++ D+    +  TY  M+D  CK G ++ A G++  M  +
Sbjct: 464 ILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVS 523

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P+ F Y+ L+ +   E  ++ A   F EM+++    DV  +N +I    KA   K+ 
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSA 583

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKM 383
             +L  M+  G++P+  T + ++N  +  G  DEA   F +M+    E DA     ++K 
Sbjct: 584 ESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKY 643

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               GE +K  ++ K +  K  +        +++ +C+
Sbjct: 644 CISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCN 681


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 190/387 (49%), Gaps = 33/387 (8%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           G RV+P++V               C      ++   +H+        E L ++R++ +M 
Sbjct: 292 GRRVTPDVVS------------FSCLIGLFTRRGEMDHAA-------EYLREMREFGLMP 332

Query: 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           D V             + +++  + R   + EA+   + M  +G   ++  +N LL+ LC
Sbjct: 333 DGV------------IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLC 380

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           K + +  A+E+ + MK+R +P D  T++ L+ G+ +D N+ +A + F  + D    PDIV
Sbjct: 381 KERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIV 440

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY  ++D +C+ G + +A  +   M S    P    YS+L+ ++  + ++++A     EM
Sbjct: 441 TYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEM 500

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              GI+ ++  YN++I  +C++       + L  M    V P+  T N +++G +  G+ 
Sbjct: 501 VNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKM 560

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA+ + + M  +  + DA TY M+I  F   G +++A  V+K M  +   P  +T+  +
Sbjct: 561 HEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSM 620

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRP 442
           ING    G    S  L ++M++KG+ P
Sbjct: 621 INGHVVAGNSKKSFQLHDEMLQKGLAP 647



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 3/346 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  T  I++  Y +  +  E     + M+K  V  ++   N ++ A  ++ +V  A  +
Sbjct: 157 VNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMAL 216

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            D M  + I P   TY+ +L+G  ++    +ARE+FR M   G  PD+ ++ +++   C+
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AG ++EAL   K M      P    +S L+  +     ++ A +   EM + G++ D  +
Sbjct: 277 AGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVI 336

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  +IG FC+A       RV  +M + G  P+  T N +LNGL       +A  +   M 
Sbjct: 337 YTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMK 396

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            +    D  T+T +I  +C+ G +EKA + +  +  +R  P + T++ LI+G+C +G + 
Sbjct: 397 ERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLG 456

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQEKMN 471
            +  L +DM  + I P+  T+  L     ++G+ D    FL E +N
Sbjct: 457 KANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVN 502



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 180/370 (48%), Gaps = 3/370 (0%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N E +    + M+ S  K  Q+  +  +++ M  + +  +V T  +++    R   VE A
Sbjct: 154 NSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAA 213

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
           +   + M   G+   L  +N +L  L ++    KA+E+F  M    + PD +++++L+ G
Sbjct: 214 MALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGG 273

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + +   L  A   ++EM      PD+V++  ++ +  + G +D A   ++ M      P 
Sbjct: 274 FCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPD 333

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             IY++++  +     + +A+    EM   G L DV  YN L+   CK  +  +   +L 
Sbjct: 334 GVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLN 393

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
           +M  +GV P+  T   +++G    G  ++A + F  +  +    D  TY  +I   C+ G
Sbjct: 394 EMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQG 453

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +L KA ++W  M  +   P+  T+S+LI+  C+KG V ++   L++M+ KGI P+  T+ 
Sbjct: 454 DLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYN 513

Query: 449 KLRKLLIKEG 458
            + K   + G
Sbjct: 514 SIIKGYCRSG 523



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 184/382 (48%), Gaps = 3/382 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+S+++ L +  ++    ++  AM    +  +V +F +++  + R  ++EEA+  +  M
Sbjct: 231 TYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM 290

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNL 216
           +   VT ++ +F+ L+    +   +  A E    M++   +PD   Y++++ G+ +   +
Sbjct: 291 RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLM 350

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  EMV  GC PD+VTY  +++ LCK  R+ +A  ++  M      P    ++ L
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H Y  +  IE A+  F  +    +  D+  YN LI   C+         +  DM+S+ +
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREI 470

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T +I+++    +G+ D A+     M+ K    +  TY  +IK +C+ G + K  +
Sbjct: 471 FPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQ 530

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
               M+  + +P + T++ LI+G   +G + ++  LL+ M  + ++P   T+  +     
Sbjct: 531 FLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFS 590

Query: 456 KEGREDVLKFLQEKMNLLVKEP 477
             G      ++ +KM     EP
Sbjct: 591 VHGNMQEADWVYKKMGARGIEP 612



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 184/380 (48%), Gaps = 9/380 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++ M+++  +    +    L+++M +K +   + T+  +++   R  + ++A   F 
Sbjct: 194 VVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFR 253

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   GV  ++ +FN L+   C++  + +A   +  M+ R + PD  ++S L+  + +  
Sbjct: 254 AMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRG 313

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E  REM + G  PD V Y +++   C+AG + EAL +   M +  C P    Y+
Sbjct: 314 EMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYN 373

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++    E R+ DA +   EM++ G+  D+  +  LI  +C+    +   +    ++ +
Sbjct: 374 TLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQ 433

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
            + P+  T N +++G+  +G+  +A  ++  M  +    +  TY+++I   C+ G+++ A
Sbjct: 434 RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNA 493

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           F     M  K  +P++ T++ +I G C  G VS     L  M    + P   T+  L   
Sbjct: 494 FAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHG 553

Query: 454 LIKEGREDVLKFLQEKMNLL 473
            +KEG+      + E  NLL
Sbjct: 554 YVKEGK------MHEAFNLL 567



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 164/359 (45%), Gaps = 13/359 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           VR+++ +I    +  + +        MR +R+  +V +F  ++  + R  +++ A     
Sbjct: 264 VRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSK------NVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
            M+++G+  +   +  ++   C++        VR     F C+     PD  TY+ LL G
Sbjct: 324 EMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCL-----PDVVTYNTLLNG 378

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K+  L  A E+  EM + G  PD+ T+  ++   C+ G +++AL    ++     RP 
Sbjct: 379 LCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ L+     +  +  A + + +M    I  +   Y+ LI + C+  +  N +  L 
Sbjct: 439 IVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLD 498

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG 388
           +M +KG+ PN  T N I+ G    G   +  +   +M       D  TY  +I  + + G
Sbjct: 499 EMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEG 558

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           ++ +AF + K M+ +   P   T++++I+G    G + ++  + + M  +GI P   T+
Sbjct: 559 KMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTY 617



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 139/283 (49%), Gaps = 2/283 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++++  L K R+     +L+N M+ + +  ++ TF  ++  Y R   +E+A+  F+
Sbjct: 369 VVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFD 428

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            +    +  ++  +N L+  +C+  ++ KA E++D M  R I P+  TYSIL++   +  
Sbjct: 429 TISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKG 488

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A     EMV+ G  P+I+TY  ++   C++G V +    +  M      P    Y+
Sbjct: 489 QVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYN 548

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H Y  E ++ +A +    ME   +  D   YN +I  F      +    V K M ++
Sbjct: 549 TLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGAR 608

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
           G+ P+  T   ++NG +  G + +++++   M++   A  D +
Sbjct: 609 GIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 147/325 (45%), Gaps = 13/325 (4%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP------DSKTYSILLEGWGKDPNL 216
           T     F+ L+    +S+  R+A E F  + D  +P      ++   ++   GW   P+L
Sbjct: 86  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGW---PHL 142

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
               + +R ++ +    +  T  IMV   CK  +  E   ++  M+     P    ++V+
Sbjct: 143 --TADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVM 200

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V        +E A+     M   GI   +  YN+++    +  ++     V + M++ GV
Sbjct: 201 VDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGV 260

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           AP+ R+ N+++ G    GE +EA R ++ M  +    D  +++ +I +F + GE++ A +
Sbjct: 261 APDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAE 320

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
             + M+    +P    ++++I G C  G++ ++  + ++M+  G  P   T+  L   L 
Sbjct: 321 YLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLC 380

Query: 456 KEGR-EDVLKFLQEKMNLLVKEPLC 479
           KE R  D  + L E     V   LC
Sbjct: 381 KERRLSDAEELLNEMKERGVPPDLC 405


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 204/464 (43%), Gaps = 77/464 (16%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYA 142
           FK A +  +Y+     ++S+IE+ A    +  ++ + + M+ +R + +E  F ++ R Y 
Sbjct: 51  FKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYG 110

Query: 143 RVQKVEEAVYTFNVM--------------------------------------QKYGVTQ 164
           +    E+A+  F  M                                       K  ++ 
Sbjct: 111 KAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISP 170

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFD---------------------CMKDRF------- 196
           N+ +FN ++ A+CK   V +A E+F                      C +DR        
Sbjct: 171 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 230

Query: 197 --------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
                    P S T+++L+ G  K  ++ R  ++   M   GC P+ VTY  +++ LC  
Sbjct: 231 DEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLK 290

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++D+A+ ++  M ++ C P    Y  L++    + R  D V     +E+ G  A+   Y
Sbjct: 291 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 350

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + LI    K  K +    + K M  KG  PN    + +++GL   G+ DEA  +   M+ 
Sbjct: 351 STLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVN 410

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K C  +A TY+ +IK F + G  +KA +VWK M     +P+   +SVLI+GLC+ G + +
Sbjct: 411 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 470

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQEKM 470
           + ++   M+ +G+RP    +  +   L   G  +V LK   E +
Sbjct: 471 AMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEML 514



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 150/331 (45%), Gaps = 9/331 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++ +I  L K      +  LV+ M  K  + N  T+  I+       K+++AV   + M
Sbjct: 244 TFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRM 303

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                  N   +  L++ L K         +   +++R    +   YS L+ G  K+   
Sbjct: 304 VASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKS 363

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++++MV+ GC P+IV Y  ++D LC+ G++DEA  I+  M +  C P +F YS L
Sbjct: 364 EEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSL 423

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +      + A+  + EM KN  + +   Y+ LI   C+  K +    +   M  +G+
Sbjct: 424 IKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGL 483

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-----EADADTYTMMIKMFCQGGELE 391
            P+    + +++GL   G  +   ++F  M  LC     + D  TY ++++  C+   + 
Sbjct: 484 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEM--LCQESDSQPDVVTYNILLRALCKQNSIS 541

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            A  +   M  +   P + T ++ +N L +K
Sbjct: 542 HAIDLLNSMLDRGCNPDLITCNIFLNALREK 572


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 182/369 (49%), Gaps = 9/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++  + K+   +   +L++ M    +  +V  +  I+ +  +     +A Y F+
Sbjct: 45  VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 104

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M + G+  N+  +N ++   C       AQ +   M +R I PD  T++ L+    K+ 
Sbjct: 105 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 164

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++  EM+     PD VTY  M+   CK  R D+A    K M   +  P    ++
Sbjct: 165 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFN 220

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y    R+++ +    E+ + G++A+   YN LI  FC+ +       + ++M S 
Sbjct: 221 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH 280

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEK 392
           GV P++ TCNI+L G     + +EA  +F  +I++ + D DT  Y ++I   C+G ++++
Sbjct: 281 GVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDE 339

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A+ ++  + +    P + T++V+I+G C K  +SD+ VL   M + G  P   T+  L +
Sbjct: 340 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 399

Query: 453 LLIKEGRED 461
             +K G  D
Sbjct: 400 GCLKAGEID 408



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 179/377 (47%), Gaps = 10/377 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           ++ + +  V  Y ++I+ L K   +     L + M  K +  NV T+  ++  +    + 
Sbjct: 72  EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 131

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            +A      M +  +  ++  FN L+SA  K   + +A+++ D M  R I PD+ TY+ +
Sbjct: 132 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 191

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K      A+ +F  M     +PD+VT+  ++DV C+A RVDE + +++ +     
Sbjct: 192 IYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 247

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
              +  Y+ L+H +   + +  A D F EM  +G+  D    N L+  FC+  K +    
Sbjct: 248 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 307

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           + + +    +  ++   NII++G+    + DEA+ +F  + I   E D  TY +MI  FC
Sbjct: 308 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 367

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
               +  A  ++  MK     P   T++ LI G    G +  S  L+ +M   G   SG+
Sbjct: 368 GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF--SGD 425

Query: 446 TFG-KLRKLLIKEGRED 461
            F  K+   LI +GR D
Sbjct: 426 AFTIKMVADLITDGRLD 442



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 5/254 (1%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P   T++ L+ G   +  +  A  +  +MV  G + D+VTYG +V+ +CK G    AL +
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M+ T  +P   IYS ++     +    DA   F EM + GI  +V  YN +I  FC 
Sbjct: 68  LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 127

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADT 376
             ++ +  R+L+DM  + + P+  T N +++  +  G+  EA ++   M+  C   D  T
Sbjct: 128 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 187

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  MI  FC+    + A  ++  M      P + TF+ +I+  C    V +   LL ++ 
Sbjct: 188 YNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREIS 243

Query: 437 EKGIRPSGETFGKL 450
            +G+  +  T+  L
Sbjct: 244 RRGLVANTTTYNTL 257



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 159/328 (48%), Gaps = 17/328 (5%)

Query: 80  AFCFF-KWAEKQQ--------NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
            FC F +W++ Q+             V  ++++I +  K  +      L + M  + +  
Sbjct: 124 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 183

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  T+  ++  + +  + ++A + F++M     + ++  FN ++   C++K V +  ++ 
Sbjct: 184 DTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLL 239

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +  R  + ++ TY+ L+ G+ +  NL  A+++F+EM+  G  PD +T  I++   C+ 
Sbjct: 240 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCEN 299

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +++EAL + + +  +     +  Y++++H     +++++A D F  +  +G+  DV  Y
Sbjct: 300 EKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 359

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  FC  +   +   +   M   G  P++ T N ++ G +  GE D++  +   M +
Sbjct: 360 NVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM-R 418

Query: 369 LCEADADTYTM-MIKMFCQGGELEKAFK 395
                 D +T+ M+      G L+K+F 
Sbjct: 419 SNGFSGDAFTIKMVADLITDGRLDKSFS 446



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 134/287 (46%), Gaps = 4/287 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPN 215
           M + G+T  +  FN L++ LC    V +A  + + M  + +  D  TY  ++ G  K  +
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A  +  +M +T   PD+V Y  ++D LCK G   +A  +   M      P  F Y+ 
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++  +    R  DA     +M +  I  DV  +NALI A  K  K     ++  +M  + 
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
           + P++ T N ++ G       D+A  +F  M      D  T+  +I ++C+   +++  +
Sbjct: 181 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM---ASPDVVTFNTIIDVYCRAKRVDEGMQ 237

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           + + +  +  + +  T++ LI+G C+   ++ +  L ++MI  G+ P
Sbjct: 238 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCP 284



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 11/249 (4%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV+ G  P ++T+  +++ LC  GRV EA  +V  M           Y  +V+       
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            + A++   +ME+  I  DV +Y+A+I   CK     +   +  +M  KG+APN  T N 
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 346 ILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++G    G   +A R+ R MI +    D  T+  +I    + G+L +A K+   M  + 
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P   T++ +I G C      D+    + M +    P   TF  +  +  +  R D   
Sbjct: 181 IFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVD--- 233

Query: 465 FLQEKMNLL 473
              E M LL
Sbjct: 234 ---EGMQLL 239


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 13/345 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  I+    +  +  +A   F  MQ+ G+  +L  +N ++   C S     A+++ 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R I PD  TY+ L+  + K+     A E++ EM+  G  P+ +TY  M+D  CK 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+D A  +   M +  C P    ++ L+  Y    RI+D ++   EM + G++AD   Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  F           +L++M S G+ P+  TC+ +L+GL   G+  +A  +F+ M K
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 369 L------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
                         E D  TY ++I      G+  +A ++++ M  +  +P   T+S +I
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +GLC +  + ++  + + M  K   P+  TF  L     K GR D
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+SL K  ++    +L   M+ K +  ++ T+  ++  +    +  +A    
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M +  ++ ++  +N L++A  K     +A+E++D M  R  IP++ TYS +++G+ K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   GC+P+++T+  ++D  C A R+D+ + ++  M  T     +  Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H + +   +  A+D   EM  +G+  D+   + L+   C   K K+   + K M  
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 334 K-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
                       GV P+ +T NI+++GLI  G+  EA  ++  M  +    D  TY+ MI
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   L++A +++  M  K F P++ TF+ LING C  G V D   L  +M  +GI 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 442 PSGETF 447
            +  T+
Sbjct: 614 ANAITY 619



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 183/359 (50%), Gaps = 4/359 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTF 137

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+  ++  F  LL  LC    V +A + F  M +    P+  T++ L+ G  ++
Sbjct: 138 GKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCRE 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFI 272
             +  A  +   M++ G  P  +TYG +VD +CK G    AL +++ M+  +   P   I
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS ++ +   + R  DA + F EM++ GI  D+  YN++I  FC + ++ +  ++L++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + ++P+  T N ++N  +  G+  EA  ++  M+ +    +  TY+ MI  FC+   L+
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLD 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  ++  M  K   P++ TF+ LI+G C    + D   LL +M E G+     T+  L
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 14/344 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  ++ EAV   + M + G+      +  ++  +CK  +   A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    IP+   YS +++   KD     A+ +F EM + G  PD+ TY  M+   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +GR  +A  +++ M      P    Y+ L++ +  E +  +A + + EM   GI+ +   
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+++I  FCK N+      +   M +KG +PN  T N +++G  G    D+   +   M 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +    AD  TY  +I  F   G+L  A  + + M      P + T   L++GLCD G + 
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 427 DSCVLLEDMIEK-----------GIRPSGETFGKLRKLLIKEGR 459
           D+  + + M +            G+ P  +T+  L   LI EG+
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 13/281 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I+     ++     +L++ M  T  + +  T+  ++  +  V  +  A+     M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK------------DRFIPDSKTYSI 205
              G+  ++   + LL  LC +  ++ A E+F  M+            +   PD +TY+I
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P    ++ L++ Y    R++D ++ F EM + GI+A+   Y  LI  F K        
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            + ++M S GV P++ T   +L GL  + E   A  +  ++
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 154/361 (42%), Gaps = 37/361 (10%)

Query: 109 KIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +I+  +   DL + M R++ + +V  FC +M    R+++ +  +  +  M++  +  ++ 
Sbjct: 56  EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +FN L+   C             C K                      LP A   F ++ 
Sbjct: 116 SFNILIKCFCS------------CSK----------------------LPFALSTFGKIT 141

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             G +PD+VT+  ++  LC   RV EAL     M  T CRP    ++ L++    E RI 
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS-KGVAPNSRTCNII 346
           +AV     M ++G+      Y  ++   CK     +   +L+ M     + PN    + I
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++ L   G   +A  +F  M  K    D  TY  MI  FC  G    A ++ + M  ++ 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P + T++ LIN    +G   ++  L ++M+ +GI P+  T+  +     K+ R D  + 
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 466 L 466
           +
Sbjct: 382 M 382



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +M+ +   P +V +  ++ V+ +  R D  + + + M+   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R   + +++L+  +   +++  A+ TF ++ K G+  DV  +  L+   C  ++     
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
                M      PN  T   ++NGL   G   EA  +  RM++   +    TY  ++   
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 385 CQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M ++   IP++  +S +I+ LC  G  SD+  L  +M EKGI P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  D  + LQE +
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEML 317



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 24/219 (10%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L+AA  + + M+SS   P +V  DT LD  G+  + ++ +D LE F+          + +
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKL-KDALEMFK--------VMQKS 494

Query: 88  EKQQNYEH-------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
           +K  +  H        V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++ 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIP 198
              +  +++EA   F+ M     + N+  F  L++  CK+  V    E+F  M  R  + 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++ TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 158/306 (51%), Gaps = 3/306 (0%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           V  +   +N L+  LC       A  + D M + R +PD  TY+ILLE   K     +A 
Sbjct: 28  VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 87

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++  EM D GC PDIVTY ++V+ +C+ GRVD+A+  +K++ S  C P +  Y++++   
Sbjct: 88  KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
               R EDA +   EM + G   +V  +N LI   C+    +    VL+ +   G  PNS
Sbjct: 148 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 207

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            + N +L+    + + D+A      M+ + C  D  +Y  ++   C+ GE++ A ++   
Sbjct: 208 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 267

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +K K   P + +++ +I+GL   G   ++  LL +M+ KG++P   T+  +   L +E R
Sbjct: 268 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327

Query: 460 -EDVLK 464
            ED ++
Sbjct: 328 IEDAIR 333



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 172/384 (44%), Gaps = 38/384 (9%)

Query: 94  EHSVRAYHSMIESL-AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E     Y+++I  L  + R    +  L   +R + + +V T+ I++    +    ++A+ 
Sbjct: 29  EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 88

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             + M+  G T ++  +N +++ +C+   V  A E    +      P++ +Y+I+L+G  
Sbjct: 89  LLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLC 148

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A E+  EM   GC P++VT+ +++  LC+ G V+ AL +++ +    C P S 
Sbjct: 149 TAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSL 208

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+H +  + +++ A+     M   G   D+  YN L+ A C++ +      +L  +
Sbjct: 209 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 268

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEAD-- 373
             KG AP   + N +++GL   G+T EA  +   M+                 LC  D  
Sbjct: 269 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 328

Query: 374 ------------------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
                                Y  +I   C+  E   A  ++ YM     +P+  T+++L
Sbjct: 329 EDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 388

Query: 416 INGLCDKGIVSDSCVLLEDMIEKG 439
           I GL  +G++ ++  LL+++  + 
Sbjct: 389 IEGLAYEGLIKEARDLLDELCSRA 412



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 4/303 (1%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           A+N +++  C +  +  A+ +   M     PD+ TY+ L+ G         A  +  EM+
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVE--PDAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
              C PD+VTY I+++  CK     +A+ ++  M    C P    Y+V+V+    E R++
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVD 119

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           DA++    +   G   +   YN ++   C A ++++   ++ +M  KG  PN  T N+++
Sbjct: 120 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLI 179

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           + L  +G  + A  V  ++ K  C  ++ +Y  ++  FC+  +++KA      M  +   
Sbjct: 180 SFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY 239

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKF 465
           P + +++ L+  LC  G V  +  LL  + +KG  P   ++  +   L K G+ ++ L+ 
Sbjct: 240 PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALEL 299

Query: 466 LQE 468
           L E
Sbjct: 300 LNE 302


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 193/373 (51%), Gaps = 3/373 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I  L K+ + +   DL+  +    +  NV  +  I+    + + V +A   ++ M
Sbjct: 164 GYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEM 223

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G++ N+  ++ L+S       ++ A ++F+ M  +   PD  T++IL++G+ KD  +
Sbjct: 224 VSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 283

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              + +F  M+  G  P++VTY  ++D  C    V++A  I+ +M      P    Y++L
Sbjct: 284 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNIL 343

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    ++++A++ F EM    I+ DV  YN+LI   CK  K     +++ +M+ +GV
Sbjct: 344 IDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 403

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T + IL+ L    + D+A  +  ++  +    +  TYT++I   C+GG LE A  
Sbjct: 404 PPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHN 463

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +++ + +K +  +++T++V+I+G C+KG+  ++  LL  M +    P   T+  + + L 
Sbjct: 464 IFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLF 523

Query: 456 KEGREDVLKFLQE 468
            +   D  + L+E
Sbjct: 524 DKDENDKAEKLRE 536



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 176/369 (47%), Gaps = 7/369 (1%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
           F+   +   Y  +   + ++I+ L    +I Q  +  D V AM  +  L+   +  ++  
Sbjct: 114 FQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQ--LDQVGYGTLIHG 171

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
             +V +   A+     +    V  N+  ++ ++  +CK K+V  A +++  M  + I P+
Sbjct: 172 LCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPN 231

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TYS L+ G+     L  A ++F +M+     PD+ T+ I+VD  CK G++ E   +  
Sbjct: 232 VVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFA 291

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     +P    Y  L+  Y +   +  A      M + G+  D+  YN LI  FCK  
Sbjct: 292 MMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIK 351

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
           K      + K+M+ K + P+  T N +++GL   G+   A ++   M  +    D  TY+
Sbjct: 352 KVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYS 411

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++   C+  +++KA  +   +K +   P+M+T+++LI+GLC  G + D+  + ED++ K
Sbjct: 412 SILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVK 471

Query: 439 GIRPSGETF 447
           G   +  T+
Sbjct: 472 GYNITVNTY 480



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 163/386 (42%), Gaps = 53/386 (13%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N   +  I   +     V +A   F+ + +   T     FN +L +L KSK+      +
Sbjct: 39  INFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSL 98

Query: 189 FDCMKDRFI-----------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
              M+   I                 P++ T++ L++G      + +A      +V  G 
Sbjct: 99  SQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGF 158

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
             D V YG ++  LCK G    AL +++ +D  + +P   +YS ++     +  + DA D
Sbjct: 159 QLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFD 218

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            + EM   GI  +V  Y+ALI  F    + K+   +   M  + + P+  T NI+++G  
Sbjct: 219 LYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFC 278

Query: 352 GRGETDEAYRVFRRMIK---------LCE---------------------------ADAD 375
             G+  E   VF  M+K          C                             D  
Sbjct: 279 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQ 338

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +Y ++I  FC+  ++++A  ++K M  K  IP + T++ LI+GLC  G +S +  L+++M
Sbjct: 339 SYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 398

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
            ++G+ P   T+  +   L K  + D
Sbjct: 399 HDRGVPPDIITYSSILDALCKNHQVD 424


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 191/397 (48%), Gaps = 12/397 (3%)

Query: 73  FRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKI----RQYQIMWDLVNAMRTKR 127
           F  AG +   F   AE K++ +   V  + S++++L       R  Q   + V       
Sbjct: 115 FCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSV 174

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           + N     I++    +  ++ EA      M + G+  ++  +N L+  LCKS  + +A++
Sbjct: 175 LFN-----ILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQ 229

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           + + M  R + P+  TY+ L+ G+ K      A ++   M+ +G +PD+VT+  ++   C
Sbjct: 230 LLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFC 289

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           +  ++D+A  ++  M   +C P    Y+VL+       R  +A +   EM+  GIL D+ 
Sbjct: 290 QKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDII 349

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN+LIG FC+  + +  +++   M  +GV P+  +   +   L+     DEA+ +   M
Sbjct: 350 TYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNM 409

Query: 367 IKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                  +  T+  +++  C    L++A  +   M+     P+  T+ VL+ GLC  G V
Sbjct: 410 FDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
            D+  +L  M+ +GI+P   + G +   L +EG++D+
Sbjct: 470 DDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDL 506



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 203/438 (46%), Gaps = 19/438 (4%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYE--HSVRAYHSMIESLA 108
           + AL +    + P  V  VL+  ++     F FF+W  +    E  H+    + ++ +L 
Sbjct: 22  EAALAKYSRNLVPNTVGRVLQVIKDVDVSLF-FFRWVTRSHRGESIHNNFTCNCLLRTLV 80

Query: 109 KIRQ----YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           K R+    YQI  D +         N  T+  ++  + +   +E A      M++ G + 
Sbjct: 81  KARRHHQAYQIFRDELLGQHCDT--NHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSP 138

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIF----DCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           ++   + ++ ALC + N+ +A + F    +C      PDS  ++IL+ G  K   L  AR
Sbjct: 139 DVVTHSSIVQALCNTGNLSRAMQYFRESVECA-----PDSVLFNILVHGLCKANQLSEAR 193

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++  EM + G  PD+VTY  ++D LCK+ R++EA  ++++M     RP    Y+ L++ Y
Sbjct: 194 QMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGY 253

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                   A      M ++G   DV  +N+LI  FC+ +K      VL  M     APN 
Sbjct: 254 CKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNL 313

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N++++GL   G  +EA  +   M  +    D  TY  +I +FC+  ++E+AF++   
Sbjct: 314 VTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNL 373

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M  +  IP   ++  L   L       ++  LL++M + G  P+  TF  L + L    R
Sbjct: 374 MVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRR 433

Query: 460 EDVLKFLQEKMNLLVKEP 477
            D  + L   M  +  +P
Sbjct: 434 LDEARHLLAVMRRVGCDP 451



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++I    K     +   L+  M ++    +V TF  ++  + +  K+++A    ++M+
Sbjct: 246 YNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK 305

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           K     NL  +N L+S LC +    +A E+   M  R  +PD  TY+ L+  + ++  + 
Sbjct: 306 KGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIE 365

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A +I   MV+ G  PD ++Y  +   L K+ R DEA  ++ +M      P  F ++ L+
Sbjct: 366 QAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLM 425

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  R+++A      M + G     + Y  L+   CKA +  +   VL  M S+G+ 
Sbjct: 426 EGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQ 485

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI----KLCEADADTYTMMIKMFCQG 387
           P   +   I++ L   G+ D A   F +++    K C+         +K+  +G
Sbjct: 486 PLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLEFVKVLREG 539


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 13/345 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  +  I+    +  +  +A   F  MQ+ G+  +L  +N ++   C S     A+++ 
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R I PD  TY+ L+  + K+     A E++ EM+  G  P+ +TY  M+D  CK 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            R+D A  +   M +  C P    ++ L+  Y    RI+D ++   EM + G++AD   Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  F           +L++M S G+ P+  TC+ +L+GL   G+  +A  +F+ M K
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 369 L------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
                         E D  TY ++I      G+  +A ++++ M  +  +P   T+S +I
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +GLC +  + ++  + + M  K   P+  TF  L     K GR D
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+SL K  ++    +L   M+ K +  ++ T+  ++  +    +  +A    
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M +  ++ ++  +N L++A  K     +A+E++D M  R  IP++ TYS +++G+ K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   GC+P+++T+  ++D  C A R+D+ + ++  M  T     +  Y
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTY 433

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H + +   +  A+D   EM  +G+  D+   + L+   C   K K+   + K M  
Sbjct: 434 NTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQK 493

Query: 334 K-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
                       GV P+ +T NI+++GLI  G+  EA  ++  M  +    D  TY+ MI
Sbjct: 494 SKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   L++A +++  M  K F P++ TF+ LING C  G V D   L  +M  +GI 
Sbjct: 554 DGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 613

Query: 442 PSGETF 447
            +  T+
Sbjct: 614 ANAITY 619



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 183/359 (50%), Gaps = 4/359 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  K++  ++ +F I+++ +    K+  A+ TF
Sbjct: 78  SVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTF 137

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             + K G+  ++  F  LL  LC    V +A  +F  M +    P+  T++ L+ G  ++
Sbjct: 138 GKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCRE 197

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFI 272
             +  A  +   M++ G  P  +TYG +VD +CK G    AL +++ M+  +   P   I
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS ++ +   + R  DA + F EM++ GI  D+  YN++I  FC + ++ +  ++L++M 
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + ++P+  T N ++N  +  G+  EA  ++  M+ +    +  TY+ MI  FC+   L+
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLD 377

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A  ++  M  K   P++ TF+ LI+G C    + D   LL +M E G+     T+  L
Sbjct: 378 AAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 14/344 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  ++ EAV   + M + G+      +  ++  +CK  +   A  + 
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    IP+   YS +++   KD     A+ +F EM + G  PD+ TY  M+   C 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +GR  +A  +++ M      P    Y+ L++ +  E +  +A + + EM   GI+ +   
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+++I  FCK N+      +   M +KG +PN  T N +++G  G    D+   +   M 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +    AD  TY  +I  F   G+L  A  + + M      P + T   L++GLCD G + 
Sbjct: 423 ETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLK 482

Query: 427 DSCVLLEDMIEK-----------GIRPSGETFGKLRKLLIKEGR 459
           D+  + + M +            G+ P  +T+  L   LI EG+
Sbjct: 483 DALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 13/281 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            ++++I+     ++     +L++ M  T  + +  T+  ++  +  V  +  A+     M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK------------DRFIPDSKTYSI 205
              G+  ++   + LL  LC +  ++ A E+F  M+            +   PD +TY+I
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G   +     A E++ EM   G  PD +TY  M+D LCK  R+DEA  +  SM S  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P    ++ L++ Y    R++D ++ F EM + GI+A+   Y  LI  F K        
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            + ++M S GV P++ T   +L GL  + E   A  +  ++
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 155/361 (42%), Gaps = 37/361 (10%)

Query: 109 KIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +I+  +   DL + M R++ + +V  FC +M    R+++ +  +  +  M++  +  ++ 
Sbjct: 56  EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIY 115

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +FN L+   C             C K                      LP A   F ++ 
Sbjct: 116 SFNILIKCFCS------------CSK----------------------LPFALSTFGKIT 141

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             G +PD+VT+  ++  LC   RV EAL +   M  T CRP    ++ L++    E RI 
Sbjct: 142 KLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS-KGVAPNSRTCNII 346
           +AV     M ++G+      Y  ++   CK     +   +L+ M     + PN    + I
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++ L   G   +A  +F  M  K    D  TY  MI  FC  G    A ++ + M  ++ 
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P + T++ LIN    +G   ++  L ++M+ +GI P+  T+  +     K+ R D  + 
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381

Query: 466 L 466
           +
Sbjct: 382 M 382



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 124/268 (46%), Gaps = 3/268 (1%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F +M+ +   P +V +  ++ V+ +  R D  + + + M+   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R   + +++L+  +   +++  A+ TF ++ K G+  DV  +  L+   C  ++     
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMF 384
            +   M      PN  T   ++NGL   G   EA  +  RM++   +    TY  ++   
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 385 CQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           C+ G+   A  + + M ++   IP++  +S +I+ LC  G  SD+  L  +M EKGI P 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKM 470
             T+  +       GR  D  + LQE +
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEML 317



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 24/219 (10%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L+AA  + + M+SS   P +V  DT LD  G+  + ++ +D LE F+          + +
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKL-KDALEMFK--------VMQKS 494

Query: 88  EKQQNYEH-------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
           +K  +  H        V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++ 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIP 198
              +  +++EA   F+ M     + N+  F  L++  CK+  V    E+F  M  R  + 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++ TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 169/325 (52%), Gaps = 2/325 (0%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +++  Y +  +V +      +M+  G+  +L   NGLL  L ++  +    ++   M+  
Sbjct: 178 VLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGA 237

Query: 196 FI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            I PD  TYS L+E + K  +L  A+++  EM +TGC+ ++VTY  ++  LC+AG ++EA
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
            G  K M+     P  F Y  +++      R + A     EM   G++ +V +Y+ LI  
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-AD 373
           F +       ++++K+M++ GV PN  T + ++ GL   G    A R+ ++M K+   AD
Sbjct: 358 FMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMAD 417

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY ++I+   +    E+AF +   M+     P+++T+S++INGLC  G    +  LLE
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLE 477

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEG 458
            MI  G++P+   +  L     +EG
Sbjct: 478 QMIADGLKPNAFVYAPLISGYCREG 502



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 160/323 (49%), Gaps = 2/323 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++  Y +V+ +E A      M++ G + N+  +N L+  LC++  + +A    
Sbjct: 242 DVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYK 301

Query: 190 DCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+D   +PD  TY  ++ G  K     +A+ +  EM   G  P++V Y  ++D   + 
Sbjct: 302 KEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQ 361

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G  DEA  IVK M +   +P    Y  L+       R+  A     +M K G +AD   Y
Sbjct: 362 GNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTY 421

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I    + +  +  + +L +M   G++PN  T +II+NGL   GE++ A  +  +MI 
Sbjct: 422 NLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIA 481

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              + +A  Y  +I  +C+ G    A +  K M  +   P ++ ++ LI GL + G + +
Sbjct: 482 DGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDE 541

Query: 428 SCVLLEDMIEKGIRPSGETFGKL 450
           +    ++M+EKG +P+  T+G L
Sbjct: 542 AIEYYDEMLEKGFQPNDFTYGGL 564



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 5/380 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y  +I  L +I + +    L+  M    +  N   +  ++  Y R      A  T 
Sbjct: 452 NVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETL 511

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M +  +T +L  +N L+  L     + +A E +D M ++ F P+  TY  L+ G+   
Sbjct: 512 KKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMA 571

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            NL +A ++  +M+++G NP+   Y  +++   K+  +++    +KSM      P + +Y
Sbjct: 572 GNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLY 631

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            +++H       ++ AV     +EKNG++ D  +Y +LI  FCKA   +    +L +M  
Sbjct: 632 GIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAK 691

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG+ P     N +++G     +   A  +F  +I K    +  TYT +I  +C+ G++  
Sbjct: 692 KGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRD 751

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++  M  +   P    +SVL  G  + G +  +  + E+MI +G      +F  L  
Sbjct: 752 AIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAII-SSFNTLVH 810

Query: 453 LLIKEGR-EDVLKFLQEKMN 471
              K G+ ++ +KFL   M+
Sbjct: 811 GFCKRGKLQETVKFLHVMMD 830



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 149/325 (45%), Gaps = 2/325 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M NV  +  ++  + R    +EA      M   GV  N   ++ L+  LCK   + +A  
Sbjct: 345 MPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASR 404

Query: 188 IFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           I   M K  ++ D+ TY++++EG  +  N   A  +  EM   G +P++ TY I+++ LC
Sbjct: 405 ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLC 464

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + G  + A G+++ M +   +P +F+Y+ L+  Y  E     A +T  +M +  +  D+ 
Sbjct: 465 QIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLY 524

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN+LI       K         +M  KG  PN  T   +++G    G  ++A ++  +M
Sbjct: 525 CYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQM 584

Query: 367 IKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +       D  Y  +++ + +   LEK     K M  K  +P    + ++I+ L   G +
Sbjct: 585 LNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHM 644

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKL 450
             +  +L  + + G+ P    +G L
Sbjct: 645 QAAVSVLSVIEKNGLVPDSLIYGSL 669



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 168/377 (44%), Gaps = 39/377 (10%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNVM 157
           Y  +I    +   + +  + +  M T+  L  + +C   ++   + V K++EA+  ++ M
Sbjct: 491 YAPLISGYCREGSFSLACETLKKM-TRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEM 549

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            + G   N   + GL+     + N+ KA+++   M +  + P+   Y+ +LEG+ K  NL
Sbjct: 550 LEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNL 609

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +     + M++ G  PD   YGI++  L  +G +  A+ ++  ++     P S IY  L
Sbjct: 610 EKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSL 669

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG----------------------- 313
           +  +     +E AV    EM K GI   ++ YNALI                        
Sbjct: 670 ISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGL 729

Query: 314 ------------AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
                        +CKA   ++   +  +M ++GVAP++   +++  G    G+  +A  
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALF 789

Query: 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +   MI    A   ++  ++  FC+ G+L++  K    M  K  +PS+ T   ++ GL +
Sbjct: 790 ITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGE 849

Query: 422 KGIVSDSCVLLEDMIEK 438
            G +S++  +  ++ +K
Sbjct: 850 AGKLSEAHTIFVELQQK 866



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 146/317 (46%), Gaps = 23/317 (7%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  ++E   K    + +   + +M  K ++ +   + I++   +    ++ AV   +V++
Sbjct: 596 YAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIE 655

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           K G+  +   +  L+S  CK+ ++ KA  + D M  + I P    Y+ L++G+ K  ++ 
Sbjct: 656 KNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDIS 715

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            AR IF  ++  G  P+ VTY  ++D  CKAG + +A+ +   M +    P +F+YSVL 
Sbjct: 716 HARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLA 775

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   ++ A+    EM   G  A ++ +N L+  FCK  K +   + L  M  K + 
Sbjct: 776 AGCSNSGDLQQALFITEEMIARG-YAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIV 834

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM------------------ 379
           P+  T   I+ GL   G+  EA+ +F  + +   +  DT  +                  
Sbjct: 835 PSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVI 894

Query: 380 --MIKMFCQGGELEKAF 394
             MI+  C+ G L+KA 
Sbjct: 895 HNMIQSHCKQGYLDKAL 911



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 3/233 (1%)

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D G  P  V   ++VD   K GRV +   +V  M      P+    + L+      + ++
Sbjct: 168 DQGRRP--VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALD 225

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
                   ME  GI  DV  Y+ LI A+CK    ++  +V+++M   G + N  T N ++
Sbjct: 226 LLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLI 285

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
            GL   G  +EA+   + M       D  TY  +I   C+ G  ++A  +   M     +
Sbjct: 286 GGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLM 345

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P++  +S LI+G   +G   ++  ++++M   G++P+  T+  L + L K GR
Sbjct: 346 PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGR 398



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 19/236 (8%)

Query: 245 LCKAGRVDEALGIVKSMD----------STVCRPTS--------FIYSVLVHTYGVENRI 286
           LC AG   +A G++  M           S+V R  S         +  VLV TY    R+
Sbjct: 130 LCAAGLYPQANGLLDQMIRAYPTPPLVLSSVHRALSGSDQGRRPVVLDVLVDTYKKTGRV 189

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            D  +  L M+  G+   +   N L+    +A+    +++V   M   G++P+  T + +
Sbjct: 190 RDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTL 249

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +       + + A +V   M +  C  +  TY  +I   C+ G +E+AF   K M+    
Sbjct: 250 IEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGL 309

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +P   T+  +INGLC +G    +  LL++M   G+ P+   +  L    +++G  D
Sbjct: 310 VPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNAD 365


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 174/343 (50%), Gaps = 2/343 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    + +KV+EA+     M   GV  NL ++N +++ LC    + +  E+ 
Sbjct: 241 NVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELV 300

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+ +  +PD  TY+ L+ G+ K+ NL +   +  EMV  G +P++VTY  +++ +CKA
Sbjct: 301 EEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKA 360

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +  A+ I   M     RP    Y+ L+  +  +  + +A     EM  +G    V  Y
Sbjct: 361 GNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTY 420

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           NAL+  +C   + +    +L+ M  +G+ P+  + + ++ G     E  +A+++   M+ 
Sbjct: 421 NALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVE 480

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    D  TY+ +I+  C   +L +AF +++ M  +   P   T++ LIN  C  G +S 
Sbjct: 481 KGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSK 540

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  L ++M+++G  P   T+  L   L K+ R  V K L  K+
Sbjct: 541 ALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 187/413 (45%), Gaps = 80/413 (19%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYA 142
           +  +  +V +Y++++++L + R      D  +A R  R +       NV T+ +I+R   
Sbjct: 160 RHGFAPTVLSYNAVLDALLR-RSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVV 218

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------------ 190
               +E+ +     M+K G++ N+  +N L+ A CK K V++A  +              
Sbjct: 219 SQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLI 278

Query: 191 ---------CMKDR---------------FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
                    C K R                +PD  TY+ L+ G+ K+ NL +   +  EM
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP-----TSFI--------- 272
           V  G +P++VTY  +++ +CKAG +  A+ I   M     RP     T+ I         
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398

Query: 273 ---------------------YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
                                Y+ LVH Y    R+++AV     M + G+  DV  Y+ +
Sbjct: 399 NEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTV 458

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  FC+  +    +++ ++M  KGV P++ T + ++ GL  + +  EA+ +FR M++   
Sbjct: 459 IAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL 518

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
             D  TYT +I  +C  GEL KA ++   M  + F+P   T+SVLINGL  K 
Sbjct: 519 PPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKA 571



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK--SKNVRK---AQEI 188
           F ++++  +R+  V +A+   ++  ++G    + ++N +L AL +  S N R    A+ +
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERV 194

Query: 189 F-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F D +++   P+  TY++++ G     +L +     R+M   G +P++VTY  ++D  CK
Sbjct: 195 FRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCK 254

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             +V EA+ ++++M           Y+ +++    + R+ +  +   EM   G++ D   
Sbjct: 255 KKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVT 314

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM- 366
           YN L+  FCK         +L +M  KG++PN  T   ++N +   G    A  +F +M 
Sbjct: 315 YNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMR 374

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           ++    +  TYT +I  FCQ G + +A+KV   M +  F PS+ T++ L++G C  G V 
Sbjct: 375 VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQ 434

Query: 427 DSCVLLEDMIEKGIRP 442
           ++  +L  M+E+G+ P
Sbjct: 435 EAVGILRGMVERGLPP 450



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 181/394 (45%), Gaps = 23/394 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I  + K        ++ + MR + +  N  T+  ++  + +   + EA    
Sbjct: 346 NVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVL 405

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
           + M   G + ++  +N L+   C    V++A  I   M +R +P D  +YS ++ G+ ++
Sbjct: 406 SEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRE 465

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L +A ++  EMV+ G  PD VTY  ++  LC   ++ EA  + + M      P    Y
Sbjct: 466 RELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTY 525

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y V+  +  A+    EM + G L D   Y+ LI    K  + K   R+L  +  
Sbjct: 526 TSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFY 585

Query: 334 KGVAPNSRTCNIILN---------------GLIGRGETDEAYRVFRRMIKL-CEADADTY 377
           +   P+  T N ++                G   +G  +EA RVF+ M++   + +A  Y
Sbjct: 586 EESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIY 645

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV--LINGLCDKGIVSDSCVLLEDM 435
            +MI    +GG + KA+ +  YM+L+    + HT +V  L+  L  +G+  +   LL+++
Sbjct: 646 NLMIHGHSRGGNVHKAYNL--YMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNI 703

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           +        +    L ++  KEG  D VL  L E
Sbjct: 704 LRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTE 737



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 7/274 (2%)

Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           R   + F      F   S  + ++++   +   +P+A  +       G  P +++Y  ++
Sbjct: 116 RHLHDTFHLCSSPF-SSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVL 174

Query: 243 DVLCKAGR-----VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           D L +         D+A  + + M      P  + Y+V++     +  +E  +    +ME
Sbjct: 175 DALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKME 234

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           K GI  +V  YN LI A CK  K K    +L+ M   GVA N  + N ++NGL G+G   
Sbjct: 235 KEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMS 294

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E   +   M  K    D  TY  ++  FC+ G L +   +   M  K   P++ T++ LI
Sbjct: 295 EVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           N +C  G +S +  + + M  +G+RP+  T+  L
Sbjct: 355 NCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTL 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 133/320 (41%), Gaps = 26/320 (8%)

Query: 75  NAGTLAFCFFKWAEK---------QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           NA    +CF    ++         ++     V +Y ++I    + R+    + +   M  
Sbjct: 421 NALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVE 480

Query: 126 KRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           K +L +  T+  +++     QK+ EA   F  M + G+  +   +  L++A C    + K
Sbjct: 481 KGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSK 540

Query: 185 AQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A  + D M  R F+PD+ TYS+L+ G  K      A+ +  ++      PD VTY  +++
Sbjct: 541 ALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIE 600

Query: 244 ---------------VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
                            C  G ++EA  + K+M     +P + IY++++H +     +  
Sbjct: 601 NCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHK 660

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A + ++E+E +          AL+ A  +      + R+L+++       +++   +++ 
Sbjct: 661 AYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVE 720

Query: 349 GLIGRGETDEAYRVFRRMIK 368
                G  D    V   M K
Sbjct: 721 VNFKEGNMDAVLNVLTEMAK 740



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 4/167 (2%)

Query: 148 EEAV---YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTY 203
           EE+V    T+N + +        +  GL+   C    + +A  +F  M  R   P++  Y
Sbjct: 586 EESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIY 645

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           ++++ G  +  N+ +A  ++ E+  +      V    +V  L + G  DE   +++++  
Sbjct: 646 NLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILR 705

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           +     + +  VLV     E  ++  ++   EM K+G+L D  ++++
Sbjct: 706 SCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDGGIHSS 752


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  ++EEA    N M   G   ++  FN L++ALC    + +A ++ 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 190 DCMKDRFI-PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
             +  + + PD  T++IL+    K  DP+L  A  +F EM ++GC PD VTY  ++D LC
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHL--ALRLFEEMKNSGCTPDEVTYNTLIDNLC 437

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G++ +AL ++K M+ST C  ++  Y+ ++     + RIE+A + F +M+  GI  +  
Sbjct: 438 SLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   CK  K  + + ++  M S+G+ PN+ T N IL     +G+  +A  +   M
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D  TY  +I   C+ G  + A KV + M++K   P+   ++ ++  L  +  +
Sbjct: 558 TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617

Query: 426 SDSCVLLEDMIEKGIRPSGETF 447
            D+  L  +M E G  P   T+
Sbjct: 618 RDALSLFREMAEVGEPPDALTY 639



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 181/369 (49%), Gaps = 11/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFN 155
           V  +++++++L +  Q +    ++  M ++ +   ET F  +M+ +     +E A+    
Sbjct: 181 VVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 240

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTYSILLEGW 210
            M + G +      N L++  CK   V  A     QEI     D F PD  TY+  + G 
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEI----ADGFEPDQITYNTFVNGL 296

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++ ++  A ++   MV  G +PD+ TY I+V+ LCK G+++EA GI+  M    C P  
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             ++ L+      NR+E+A+D   ++   G+  DV  +N LI A CK        R+ ++
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M + G  P+  T N +++ L   G+  +A  + + M    C     TY  +I   C+   
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +E+A +V+  M L+    +  TF+ LI+GLC    + D+  L+  MI +G++P+  T+  
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 450 LRKLLIKEG 458
           +     K+G
Sbjct: 537 ILTHYCKQG 545



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 163/332 (49%), Gaps = 4/332 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++I +L    + +   DL   +  K +  +V TF I++    +V     A+  F 
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDP 214
            M+  G T +   +N L+  LC    + KA ++   M+    P S  TY+ +++G  K  
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F +M   G + + +T+  ++D LCK  ++D+A  ++  M S   +P +  Y+
Sbjct: 476 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 535

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y  +  I+ A D    M  NG   DV  Y  LI   CKA + +   +VL+ M  K
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEK 392
           G+ P  +  N +L  L  R    +A  +FR M ++ E  DA TY ++ +  C+GG  +++
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 655

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           AF     M  K FIP   +F +L  GL + G+
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGM 687



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 201/426 (47%), Gaps = 17/426 (3%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL 107
           +L+ AL +      PE+ E+++ K    G L       AE +++ ++  +   HS ++S 
Sbjct: 60  MLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSY 119

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV------QKVEEAVYTFNVMQKYG 161
              + +    DL+   + + +  ++   ++      V       K+ E+VY+   M   G
Sbjct: 120 EGQQLFDDAVDLI-LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYS--EMGARG 176

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           +  ++  FN L+ ALC++  VR A  + + M  R + PD  T++ L++G+ ++ ++  A 
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +   M++ GC+   VT  ++++  CK GRV++ALG ++   +    P    Y+  V+  
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              + +  A+     M + G   DV  YN ++   CK  + +    +L  M  +G  P+ 
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N ++  L      +EA  + R++ +K    D  T+ ++I   C+ G+   A ++++ 
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF-----GKLRKLL 454
           MK     P   T++ LI+ LC  G +  +  LL+DM   G   S  T+     G  +K+ 
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 455 IKEGRE 460
           I+E  E
Sbjct: 477 IEEAEE 482



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 166/334 (49%), Gaps = 5/334 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSI 205
           V  A+   +VM + G   ++  +N +++ LCK+  + +A+ I + M DR  +PD  T++ 
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+        L  A ++ R++   G +PD+ T+ I+++ LCK G    AL + + M ++ 
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P    Y+ L+       ++  A+D   +ME  G       YN +I   CK  + +   
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            V   M+ +G++ N+ T N +++GL    + D+A+ +  +MI +  + +  TY  ++  +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G+++KA  + + M    F   + T+  LINGLC  G    +  +L  M  KG+RP+ 
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 445 ETFGK-LRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           + +   L+ L  +    D L   +E     V EP
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAE--VGEP 633



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 184/423 (43%), Gaps = 56/423 (13%)

Query: 9   NKMIS-GCISFLRRYNS-------SEPSTEALDAAKSISKIMLSSPKV----VLDTALDQ 56
           N+M+  GC+  +  +N+            EALD A+ ++ +   SP V    +L  AL +
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCK 403

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
            G    P +   + E+ +N+G                      Y+++I++L  + +    
Sbjct: 404 VG---DPHLALRLFEEMKNSGCTP---------------DEVTYNTLIDNLCSLGKLGKA 445

Query: 117 WDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            DL+  M  T    +  T+  I+    +  ++EEA   F+ M   G+++N   FN L+  
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK K +  A E+ + M  +   P++ TY+ +L  + K  ++ +A +I   M   G   D
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTYG +++ LCKAGR   AL +++ M     RPT   Y+ ++ +    N I DA+  F 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 295 EMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           EM + G   D   Y  +    C+     K  +  + +M  KG  P   +  ++  GL+  
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 354 GETD---EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           G  D    A  +    + L E+D                      +  Y+K+++F  ++ 
Sbjct: 686 GMDDYFIRAIEIIMEKVDLRESDVSA-------------------IRGYLKIRKFYDALA 726

Query: 411 TFS 413
           TF 
Sbjct: 727 TFG 729



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 161/395 (40%), Gaps = 38/395 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIM 138
           A      A  + ++      Y  +I  L  +    +M  LV  MR +   + +      +
Sbjct: 57  ALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL 116

Query: 139 RKYARVQKVEEAV-YTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
             Y   Q  ++AV    N +Q  +G+  +   +N LL+ L +   ++             
Sbjct: 117 DSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMK------------- 163

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                    LLE             ++ EM   G  PD+VT+  ++  LC+A +V  A+ 
Sbjct: 164 ---------LLE------------SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 202

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++ M S    P    ++ L+  +  E  IE A+     M + G  A     N LI  +C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADAD 375
           K  + ++    ++   + G  P+  T N  +NGL        A +V   M++   + D  
Sbjct: 263 KLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY +++   C+ G+LE+A  +   M  +  +P + TF+ LI  LC    + ++  L   +
Sbjct: 323 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG+ P   TF  L   L K G   +   L E+M
Sbjct: 383 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 179/375 (47%), Gaps = 38/375 (10%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  TF I++       K+ EA+     M+ +    +  ++N +L  LCK   + +A+++
Sbjct: 210 VNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDL 269

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              MK+   +P+  T++IL+ G+ K   L  A ++   M      PD+ TY +++  LCK
Sbjct: 270 LLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCK 329

Query: 248 AGRVDEAL-----------------------------------GIVKSMDSTVCRPTSFI 272
            G++DEA                                     ++  M+    +P +  
Sbjct: 330 DGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVT 389

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+V+V  Y  E ++++A +   +ME++G   D   +N LI  +CKA +    +R++ +M+
Sbjct: 390 YNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMS 449

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELE 391
            KG+  NS T N IL+ L G  + D+AY++     K     D  +Y  +I  + + G+  
Sbjct: 450 RKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSV 509

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A K+W  MK K  IPS+ T++ +I GLC  G    S   L +++E G+ P   T+  + 
Sbjct: 510 EAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTII 569

Query: 452 KLLIKEGR-EDVLKF 465
               +EG+ E   +F
Sbjct: 570 LGYCREGQVEKAFQF 584



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 188/409 (45%), Gaps = 39/409 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y+++++ L K  +     DL+  M+   +L N  TF I++  Y ++  ++EA    ++M
Sbjct: 249 SYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLM 308

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL---------- 206
            +  V  ++  +N L+  LCK   + +A  + D M++ + +PD  TY+ L          
Sbjct: 309 AQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSS 368

Query: 207 ---------LEGWGKDPN----------------LPRAREIFREMVDTGCNPDIVTYGIM 241
                    +EG G  PN                +  A    R+M ++G +PD VT+  +
Sbjct: 369 LKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTL 428

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           ++  CKAGR+ EA  ++  M     +  S   + ++HT   E +++DA        K G 
Sbjct: 429 INGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGY 488

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             D   Y  LI  + K  K     ++  +M  K + P+  T N ++ GL   G+TD++  
Sbjct: 489 FVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSID 548

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
               +++     D  TY  +I  +C+ G++EKAF+    M  K F P + T ++L+ GLC
Sbjct: 549 KLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLC 608

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +G++  +  L    I KG      T+  +   L KE R E+    L E
Sbjct: 609 TEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAE 657



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 167/332 (50%), Gaps = 6/332 (1%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK---SKNVRKAQEIF-DCMKDRF 196
           Y    +   A   FN M++  +  NL   N L++AL +     +V  ++ IF D +K   
Sbjct: 149 YVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGV 208

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             ++ T++IL+ G   +  L  A  +  +M D  C PD V+Y  ++DVLCK G+++EA  
Sbjct: 209 KVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARD 268

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M +    P    +++LV  Y     +++A      M +N +L DV  YN LIG  C
Sbjct: 269 LLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLC 328

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K  K    +R+  +M +  + P+  T N ++NG      + + + +  +M  K  + +A 
Sbjct: 329 KDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAV 388

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY +++K + + G+++ A    + M+   F P   TF+ LING C  G +S++  ++++M
Sbjct: 389 TYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEM 448

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
             KG++ +  T   +   L  E + +D  K L
Sbjct: 449 SRKGLKMNSVTLNTILHTLCGERKLDDAYKLL 480



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 47/360 (13%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++  Y +  ++ EA    + M + G+  N    N +L  LC  + +  A ++    
Sbjct: 424 TFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSA 483

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R +  D  +Y  L+ G+ KD     A +++ EM +    P I+TY  M+  LC +G+ 
Sbjct: 484 SKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKT 543

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN------------ 299
           D+++  +  +  +   P    Y+ ++  Y  E ++E A     +M K             
Sbjct: 544 DQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNIL 603

Query: 300 -----------------------GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                                  G   D   YN +I   CK ++F+  + +L +M  K +
Sbjct: 604 LRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKL 663

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            P+  T N IL+ L   G   EA     R+++  +    T +           L K    
Sbjct: 664 GPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTIS-----------LNKRKIE 712

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
                 +   P+  TFS  IN LC +G   D+  ++++  +KGI     T+  L + LIK
Sbjct: 713 SSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIK 772



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 114/263 (43%), Gaps = 28/263 (10%)

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           +WD    M+ K ++ ++ T+  ++       K ++++   N + + G+  +   +N ++ 
Sbjct: 514 LWD---EMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIIL 570

Query: 175 ALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
             C+   V KA +  + M K  F PD  T +ILL G   +  L +A ++F   +  G   
Sbjct: 571 GYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAI 630

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D VTY  ++  LCK  R +EA  ++  M+     P  + Y+ ++       R+++A +  
Sbjct: 631 DAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFM 690

Query: 294 LEMEKNGILADVAM-----------------------YNALIGAFCKANKFKNVYRVLKD 330
             + + G L D  +                       ++  I   C   K+K+   ++++
Sbjct: 691 SRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQE 750

Query: 331 MNSKGVAPNSRTCNIILNGLIGR 353
              KG+  +  T   ++ GLI R
Sbjct: 751 STQKGITLHKSTYISLMEGLIKR 773



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 4/203 (1%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY---RVL 328
           I    +  Y   NR   A   F  M++  +  ++   N LI A  +     +VY    + 
Sbjct: 141 ILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIF 200

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
            D+   GV  N+ T NI++ G     +  EA  +  +M    C  D  +Y  ++ + C+ 
Sbjct: 201 SDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKK 260

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+L +A  +   MK    +P+ +TF++L++G C  G + ++  +++ M +  + P   T+
Sbjct: 261 GKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTY 320

Query: 448 GKLRKLLIKEGREDVLKFLQEKM 470
             L   L K+G+ D    L+++M
Sbjct: 321 NMLIGGLCKDGKIDEAFRLKDEM 343



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 38/281 (13%)

Query: 77  GTLAFCFFK----------WAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           GTL   +FK          W E K++    S+  Y++MI  L    +     D +N +  
Sbjct: 496 GTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLE 555

Query: 126 KRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             ++  ET +  I+  Y R  +VE+A    N M K     +L   N LL  LC    + K
Sbjct: 556 SGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDK 615

Query: 185 AQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           A ++F+    K + I D+ TY+ ++ G  K+     A ++  EM +    PD  TY  ++
Sbjct: 616 ALKLFNTWISKGKAI-DAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAIL 674

Query: 243 DVLCKAGRVDEALGIV-------KSMDSTVC----------------RPTSFIYSVLVHT 279
             L  AGR+ EA   +       K  D T+                  P S  +S  ++ 
Sbjct: 675 SALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINE 734

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
              + + +DA+    E  + GI    + Y +L+    K  K
Sbjct: 735 LCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIKRRK 775


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 156/299 (52%), Gaps = 3/299 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N L+  LC       A  + D M + R +PD  TY+ILLE   K     +A ++  EM 
Sbjct: 161 YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 220

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D GC PDIVTY ++V+ +C+ GRVD+A+  +K++ S  C P +  Y++++       R E
Sbjct: 221 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 280

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           DA +   EM + G   +V  +N LI   C+    +    VL+ +   G  PNS + N +L
Sbjct: 281 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 340

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +    + + D+A      M+ + C  D  +Y  ++   C+ GE++ A ++   +K K   
Sbjct: 341 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCA 400

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLK 464
           P + +++ +I+GL   G   ++  LL +M+ KG++P   T+  +   L +E R ED ++
Sbjct: 401 PVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 459



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 181/403 (44%), Gaps = 47/403 (11%)

Query: 94  EHSVRAYHSMIESL-AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E     Y+++I  L  + R    +  L   +R + + +V T+ I++    +    ++A+ 
Sbjct: 155 EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 214

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             + M+  G T ++  +N +++ +C+   V  A E    +      P++ +Y+I+L+G  
Sbjct: 215 LLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLC 274

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A E+  EM   GC P++VT+ +++  LC+ G V+ AL +++ +    C P S 
Sbjct: 275 TAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSL 334

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+H +  + +++ A+     M   G   D+  YN L+ A C++ +      +L  +
Sbjct: 335 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 394

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEAD-- 373
             KG AP   + N +++GL   G+T EA  +   M+                 LC  D  
Sbjct: 395 KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI 454

Query: 374 ------------------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
                                Y  +I   C+  E   A  ++ YM     +P+  T+++L
Sbjct: 455 EDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 514

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           I GL  +G++ ++  LL+++  +G+         +RK LI +G
Sbjct: 515 IEGLAYEGLIKEARDLLDELCSRGV---------VRKSLINKG 548



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 186/437 (42%), Gaps = 53/437 (12%)

Query: 75  NAGTLAFCFFKWAEKQQNYEH---------SVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           +AGT A    K +   +  E           V AY++M+       Q      LV  M  
Sbjct: 95  DAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMPV 154

Query: 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
           +   +  T+  ++R      +   A+   + M +     ++  +  LL A CK    ++A
Sbjct: 155 EP--DAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 212

Query: 186 QEIFDCMKDR-FIPDSKTYSILLEG-------------------WGKDPNL--------- 216
            ++ D M+D+   PD  TY++++ G                   +G +PN          
Sbjct: 213 MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 272

Query: 217 -------PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                    A E+  EM   GC P++VT+ +++  LC+ G V+ AL +++ +    C P 
Sbjct: 273 LCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPN 332

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           S  Y+ L+H +  + +++ A+     M   G   D+  YN L+ A C++ +      +L 
Sbjct: 333 SLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 392

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
            +  KG AP   + N +++GL   G+T EA  +   M+ K  + D  TY+ +    C+  
Sbjct: 393 QLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 452

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF- 447
            +E A + +  ++     P+   ++ +I GLC +     +  L   MI  G  P+  T+ 
Sbjct: 453 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 512

Query: 448 ----GKLRKLLIKEGRE 460
               G   + LIKE R+
Sbjct: 513 ILIEGLAYEGLIKEARD 529



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 149/306 (48%), Gaps = 4/306 (1%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           ++ A+N +++  C +  +  A+ +   M     PD+ TY+ L+ G         A  +  
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMP--VEPDAYTYNTLIRGLCGRGRTANALAVLD 182

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM+   C PD+VTY I+++  CK     +A+ ++  M    C P    Y+V+V+    E 
Sbjct: 183 EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 242

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R++DA++    +   G   +   YN ++   C A ++++   ++ +M  KG  PN  T N
Sbjct: 243 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFN 302

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           ++++ L  +G  + A  V  ++ K  C  ++ +Y  ++  FC+  +++KA      M  +
Sbjct: 303 MLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSR 362

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
              P + +++ L+  LC  G V  +  LL  + +KG  P   ++  +   L K G+ ++ 
Sbjct: 363 GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA 422

Query: 463 LKFLQE 468
           L+ L E
Sbjct: 423 LELLNE 428



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 10/271 (3%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ T + L++          AR +        C PD++ Y  MV   C AG++D A  +
Sbjct: 94  PDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMVAGYCGAGQLDAARRL 148

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           V  M      P ++ Y+ L+       R  +A+    EM +   + DV  Y  L+ A CK
Sbjct: 149 VAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 205

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
            + +K   ++L +M  KG  P+  T N+++NG+   G  D+A    + +    CE +  +
Sbjct: 206 RSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS 265

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y +++K  C     E A ++   M  K   P++ TF++LI+ LC KG+V  +  +LE + 
Sbjct: 266 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 325

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED-VLKFL 466
           + G  P+  ++  L     K+ + D  + FL
Sbjct: 326 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 356



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 347 LNGLIGRGETDEAYRVF---------------------------RRMIKLCEADADTYTM 379
           L  L+ RGE DEA R+                            RR++  C  D   Y  
Sbjct: 72  LRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNA 131

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           M+  +C  G+L+ A ++   M ++   P  +T++ LI GLC +G  +++  +L++M+ + 
Sbjct: 132 MVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRR 188

Query: 440 IRPSGETFGKLRKLLIK-EGREDVLKFLQE 468
             P   T+  L +   K  G +  +K L E
Sbjct: 189 CVPDVVTYTILLEATCKRSGYKQAMKLLDE 218


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 181/378 (47%), Gaps = 3/378 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+N E +V  Y+++I+ L K RQ     ++ + M  K +  NV T+  I+    +  + +
Sbjct: 207 QKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWK 266

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
                 N M    +  N+  F  L+ ALCK   V  A ++ D M  R + PD  TY+ L+
Sbjct: 267 HVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALM 326

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G      +  A ++F  MV  GC P++++Y  +++  CK  R+D+A+ + + M      
Sbjct: 327 DGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELV 386

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L+H      R+ DA+  F EM  +G + D+  Y  L+   CK         +
Sbjct: 387 PNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAM 446

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
           LK +    +AP+ ++ NI+++G+   GE + A  +F  +  K    D  TYT+MI   C 
Sbjct: 447 LKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCL 506

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G L +A K+++ M      P   T++++  G         +  LL++M+ +G      T
Sbjct: 507 QGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADAST 566

Query: 447 FGKLRKLLIKEGREDVLK 464
              + ++L  +G +  +K
Sbjct: 567 ITLIVEMLSDDGLDQSVK 584



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 164/352 (46%), Gaps = 9/352 (2%)

Query: 126 KRMLNVET------FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
            RML+++       F  I+   A ++     +     M   G+  ++     ++++ C  
Sbjct: 63  NRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHL 122

Query: 180 KNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             V     +     K    PD+ T++ L+ G   +  +  A  +F +MV  G  P+ VTY
Sbjct: 123 NRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTY 182

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
           G ++  LCK G    A+ +++SM    C P    Y+ ++     + ++ +A++ F EM  
Sbjct: 183 GTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIA 242

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI  +V+ YN++I   CK +++K+V  ++ +M    + PN      +++ L   G    
Sbjct: 243 KGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTI 302

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A+ V   MI+   E D  TYT ++   C   E+++A KV+  M  K   P++ ++S LIN
Sbjct: 303 AHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLIN 362

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           G C    +  +  L E+M ++ + P+  T+  L   L   GR  D +    E
Sbjct: 363 GYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHE 414



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 121/240 (50%), Gaps = 1/240 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV ++  ++  Y ++Q++++A+Y F  M +  +  N+  +N L+  LC    +R A  +F
Sbjct: 353 NVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALF 412

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M     IPD  TY ILL+   K  +L +A  + + +  +   PDI +Y I++D +C+ 
Sbjct: 413 HEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRV 472

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A  +  S+ S    P  + Y+++++   ++  + +A   F EM  +G   D   Y
Sbjct: 473 GELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTY 532

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +   F + N+  +  ++L++M  +G + ++ T  +I+  L   G      ++    ++
Sbjct: 533 NLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEFVQ 592



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 136/326 (41%), Gaps = 2/326 (0%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSI 205
           ++EA+ +FN M       ++  F  +L+++   K+      +   M    IP D  T +I
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           ++  +     +     +  ++   G  PD  T+  ++  LC  G++ EAL +   M    
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            +P    Y  L+H          A+     M +     +V  YN +I    K  +     
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            +  +M +KG++PN  T N I++GL    E      +   M+      +   +T ++   
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G +  A  V   M  +   P + T++ L++G C +  + ++  + + M+ KG  P+ 
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNV 354

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKM 470
            ++  L     K  R D   +L E+M
Sbjct: 355 ISYSTLINGYCKIQRIDKAMYLFEEM 380


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 211/466 (45%), Gaps = 11/466 (2%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGI 59
           M KV  S++  +    +   +++  +PS   LD     I KI    P    + AL+   +
Sbjct: 1   MFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDA--EKALEVLKL 58

Query: 60  RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +V   +V +VL K      +   FFKWA K++N+EH +  Y  +I  L     +  MW +
Sbjct: 59  KVDHRLVREVL-KIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKM 117

Query: 120 VNAM-RTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           +  M R+   ++       +++   + + V +A+  F  ++        + +N ++  L 
Sbjct: 118 IQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLM 177

Query: 178 KSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           +  +  K  E++   C +    PD+ TYS+L+  + K      A  +F EM   G +P  
Sbjct: 178 QEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTA 237

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
             Y  ++ +  K+G  ++ALG+V+ M    C PT F Y+ L+   G   R+EDA   FL 
Sbjct: 238 KIYTTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLN 296

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-GRG 354
           M K+G   DV + N LI  F KA + ++  ++   M S   APN  T N ++  L   + 
Sbjct: 297 MLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKA 356

Query: 355 ETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
              EA   F +M        + TY+++I  FC+   +EKA  + + M  K F P    + 
Sbjct: 357 PASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYC 416

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            LIN L        +  L  ++ E   R S   +  + K L K GR
Sbjct: 417 SLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGR 462



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 164/335 (48%), Gaps = 4/335 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDL-VNAMRTKRMLNVETFCIIMRKYARVQKV 147
           K +    +V  Y  +I+ L K  + +  + + +N ++     +V     ++  + +  ++
Sbjct: 263 KDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRL 322

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCMK-DRFIPDSKTYSI 205
           E+A+  F+ M+      N+  +N ++ AL +SK    +A   F+ MK +   P S TYSI
Sbjct: 323 EDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSI 382

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L++G+ K   + +A  +  EM + G  P    Y  +++ L KA R + A  +   +    
Sbjct: 383 LIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENC 442

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            R ++ IY+V++   G   R  +AVD F EM+K G   DV  YNAL+    +A   +  +
Sbjct: 443 GRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAF 502

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
             L+ M   G  P+  + NIILNGL   G  ++A  +F +M   L + DA +Y  ++   
Sbjct: 503 SALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSL 562

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            + G  E+A K+ + M  + F     T+S ++  +
Sbjct: 563 SRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAV 597



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 187/421 (44%), Gaps = 42/421 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQK 146
           K +  + +   Y+SMI  L +   ++ + +L + M  +     +  T+ +++  + ++ +
Sbjct: 158 KSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGR 217

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSI 205
            + A+  F+ M+  G+      +  LL+   KS +  KA  +   MKD+   P   TY+ 
Sbjct: 218 DDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTE 276

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L++G GK   +  A  +F  M+  GC PD+V    ++++  KAGR+++AL +   M S  
Sbjct: 277 LIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLK 336

Query: 266 CRPTSFIYSVLVHT-YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
           C P    Y+ ++   +  +    +A   F +M+ NG+      Y+ LI  FCK N+ +  
Sbjct: 337 CAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKA 396

Query: 325 YRVLKDMNSKGVAP-----------------------------------NSRTCNIILNG 349
             +L++M+ KG  P                                   ++R   +++  
Sbjct: 397 LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKN 456

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   G   EA  +F  M K+ C  D   Y  ++    + G +E+AF   + M+     P 
Sbjct: 457 LGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPD 516

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
           +++ ++++NGL   G    +  +   M +  I+P   ++  +   L + G  E+  K ++
Sbjct: 517 LNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMR 576

Query: 468 E 468
           E
Sbjct: 577 E 577



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 120/227 (52%), Gaps = 1/227 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  +VE+A+     M + G     AA+  L++AL K+K    A E+F  +
Sbjct: 379 TYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLEL 438

Query: 193 KDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K+     S + Y+++++  GK      A ++F EM   GCNPD+  Y  ++  L +AG +
Sbjct: 439 KENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMI 498

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +EA   +++M+   C P    ++++++      R E A + F++M+ + I  D   YN +
Sbjct: 499 EEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTI 558

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
           +G+  ++  F+   +++++M S+G   +  T + IL  +    E DE
Sbjct: 559 LGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 4/264 (1%)

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPT 269
           GK   + +A  +F ++    C P   TY  M+ +L + G  ++   +   M +   C P 
Sbjct: 142 GKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPD 201

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           +  YSVLV  +    R + A+  F EM+ NG+     +Y  L+  + K+   K +  +++
Sbjct: 202 TMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKAL-GLVQ 260

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG 388
           +M  KG AP   T   ++ GL   G  ++AY VF  M+K  C+ D      +I +F + G
Sbjct: 261 EMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAG 320

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD-KGIVSDSCVLLEDMIEKGIRPSGETF 447
            LE A K++  M+  +  P++ T++ +I  L + K   S++    E M   G+ PS  T+
Sbjct: 321 RLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTY 380

Query: 448 GKLRKLLIKEGREDVLKFLQEKMN 471
             L     K  R +    L E+M+
Sbjct: 381 SILIDGFCKTNRVEKALLLLEEMD 404



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 15/174 (8%)

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL------IGRGE-T 356
           D+  Y  LI        F  +++++++M        S TC I    L      +G+ +  
Sbjct: 94  DLTTYMPLIRCLDDCGLFGEMWKMIQEM------VRSPTCVIGPADLSEVVKILGKAKMV 147

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM-KLKRFIPSMHTFSV 414
           ++A  VF ++  + C+  A TY  MI M  Q G  EK  +++  M       P   T+SV
Sbjct: 148 NKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSV 207

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           L++     G    +  L ++M   G+ P+ + +  L  +  K G E  L  +QE
Sbjct: 208 LVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLVQE 261


>gi|357113487|ref|XP_003558534.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Brachypodium distachyon]
          Length = 520

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 217/455 (47%), Gaps = 16/455 (3%)

Query: 27  PSTEALDAAKSISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNAG---TLAFC 82
           P+++A   A S+ +I+  +P    +++AL  S I +S  +++ VL +FR A      A  
Sbjct: 35  PASDA--DADSVYRIVTGAPTPSAMESALSTSSILLSAPLLDLVLSRFRFAHGDPLRALS 92

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRK 140
               A  +     S     + I  L + R++  MWDLV++        +   T  +++ +
Sbjct: 93  LLSLAVDRCGVAPSPFTLDTAIYVLGRARRFTHMWDLVHSYHRLCPDAVTARTAMVVLGR 152

Query: 141 YARVQKVEEAVYTFNVMQKYGV----TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
            A++  V E V +F  + +       T++   FN LL  LC+ K++  A+ +F   K  F
Sbjct: 153 VAKICSVRETVASFRRLLRLFRGREGTESADLFNALLRTLCQEKSMSDARNVFHAHKYEF 212

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             + +T++ILL GW    +   A   F EM + G +PD+VTY  ++D  CK   V++A  
Sbjct: 213 QVNRQTFNILLSGWKTSED---AEAFFAEMRELGIDPDLVTYNSLIDCQCKNRDVEKAYK 269

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M      P    Y+ L+   G+  + + A     EM + G   DV  YNA I  F 
Sbjct: 270 LLDEMREKEISPDVITYTSLIGGLGLIGQPDKARHLLKEMCELGCHPDVPAYNATIRNFV 329

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
            A +  + + ++ +M SKG+ PN+ T N+         +   A+ ++ RM  + C  +  
Sbjct: 330 IAKRLGDAFALMDEMASKGLMPNATTYNLFFRFYYWAYDIGSAWLLYERMRSERCFPNTQ 389

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +   ++++  + G++ +A ++W  M    F        VL + LCD+G + ++      M
Sbjct: 390 SCMFIVRLCHRHGKVMQALELWSDMVGNGFGSFTLVSDVLFDLLCDEGKLEEAERCFHQM 449

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +E G +PS   F +++ L+    RE+ +  L EKM
Sbjct: 450 VELGQKPSSVAFRRIKILMQLANREESISKLNEKM 484


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 187/380 (49%), Gaps = 5/380 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAV 151
           E  V  ++++I+ L K+ + +    L+  M+   +   N  T+  ++  + +    + A 
Sbjct: 354 EPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAH 413

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW 210
             F  M + GV  N+   N L+  LCK   V +A E F+ MK + +  ++ TY+ L+  +
Sbjct: 414 ELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAF 473

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
               N+ RA + F EM+ +GC+PD V Y  ++  LC AGR+++A  +V  +         
Sbjct: 474 CGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDR 533

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+VL+  +  + ++E   +   EME+ G+  D   YN LI    K   F    +V++ 
Sbjct: 534 SCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEK 593

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGG 388
           M  +G+ P+  T   I++    +   DE  ++F  M    +   +T  Y ++I   C+  
Sbjct: 594 MIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNN 653

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++++A  + + MK+KR  P+  T++ ++ G+ DK ++  +  L++ M+E+  RP   T  
Sbjct: 654 DVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITME 713

Query: 449 KLRKLLIKEGREDVLKFLQE 468
            L + L   G  + LK   E
Sbjct: 714 VLTEWLSAVGEIEKLKHFVE 733



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 188/398 (47%), Gaps = 46/398 (11%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           ++++  L + R  + M +L+  M  +++  +V TF I++    + ++++EA+  F+ ++ 
Sbjct: 285 NALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRG 344

Query: 160 ------YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWG 211
                  GV  ++  FN L+  LCK         + + MK   I  P++ TY+ L++G+ 
Sbjct: 345 KGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFF 404

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-------------------- 251
           K  N  RA E+FR+M + G  P+++T   +VD LCK GRV                    
Sbjct: 405 KAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAA 464

Query: 252 ---------------DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
                          + A+   + M S+ C P + +Y  L+    +  R+ DA     ++
Sbjct: 465 TYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKL 524

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           +  G   D + YN LI  FCK  K + VY +L +M   GV P++ T N +++ L   G+ 
Sbjct: 525 KLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDF 584

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM-KLKRFIPSMHTFSV 414
             A +V  +MIK        TY  +I  +C    +++  K++  M    +  P+   +++
Sbjct: 585 ATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNI 644

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           LI+ LC    V  +  L+EDM  K +RP+  T+  + K
Sbjct: 645 LIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILK 682



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 148/351 (42%), Gaps = 47/351 (13%)

Query: 172 LLSALCKSKNVRKAQEIFDC-MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+  LC  +    A E+  C M+     D+ + + LL   G+  ++ R  E+  EM    
Sbjct: 252 LVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRK 311

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSM------DSTVCRPTSFIYSVLVHTYGVEN 284
             P +VT+GI+V+ LCKA R+DEAL +   +      +     P   +++ L+       
Sbjct: 312 IRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVG 371

Query: 285 RIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           + ED +    EM+   I   +   YN LI  F KA  F   + + + MN +GV PN  T 
Sbjct: 372 KEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITL 431

Query: 344 NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N +++GL   G    A   F  M  K  + +A TYT +I  FC    + +A + ++ M  
Sbjct: 432 NTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLS 491

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCV-------------------------------- 430
               P    +  LI+GLC  G ++D+ V                                
Sbjct: 492 SGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLER 551

Query: 431 ---LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
              LL +M E G++P   T+  L   L K G       + EKM   +KE L
Sbjct: 552 VYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKM---IKEGL 599



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 28/268 (10%)

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVH 278
           +F ++  +  +P +  +G++  VL K+GR  +AL ++  M   +S        ++  LV 
Sbjct: 163 LFNQLDPSSKSPQLC-HGLL-RVLLKSGRAGDALHVLDEMPQANSGFSVTGEIVFGELVR 220

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
           + G      + V    ++ + G+  D      L+G  C   K    + VL  +   G A 
Sbjct: 221 S-GRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAV 279

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--------EADADTYTMMIKMFCQGGEL 390
           ++ +CN +L  L GRG      R  +RM +L              T+ +++   C+   +
Sbjct: 280 DAASCNALLTWL-GRG------RDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRI 332

Query: 391 EKAFKVWKYMKLK------RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI-RPS 443
           ++A +V+  ++ K         P +  F+ LI+GLC  G   D   LLE+M    I RP+
Sbjct: 333 DEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPN 392

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMN 471
             T+  L     K G  D    L  +MN
Sbjct: 393 TVTYNCLIDGFFKAGNFDRAHELFRQMN 420


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 181/383 (47%), Gaps = 3/383 (0%)

Query: 89   KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
            K  N E S+  ++++++ L K    +   +++  M+ +  + +  TF I+   Y+   K 
Sbjct: 649  KADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKA 708

Query: 148  EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
            + A+  +      G+  N    + LL+ALCK   + KA+EI    M    +P+   Y+ +
Sbjct: 709  DAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTM 768

Query: 207  LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
            ++G+ +  +L  AR     M   G  PD + Y  ++   C+ G ++ A   V  M     
Sbjct: 769  IDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGV 828

Query: 267  RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
             P+   Y++L+  YG +   +   D   EME NG + +V  Y  LI   CK +K      
Sbjct: 829  SPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQI 888

Query: 327  VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
            V +DM  +GV+PN R  N++++G   +G+ ++A+R    M K   E +  TY  +I    
Sbjct: 889  VKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLS 948

Query: 386  QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
              G+L +A  +   +  K   P + T++ LI+G    G V     L E+M   GI+P+ +
Sbjct: 949  MNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLK 1008

Query: 446  TFGKLRKLLIKEGREDVLKFLQE 468
            T+  L  L  KEG E   K   E
Sbjct: 1009 TYHLLISLCTKEGIELTKKIFGE 1031



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 7/382 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K      +V  Y+ +I+ L K+RQ +    L + M  +R+L ++ T+  ++  Y +    
Sbjct: 579 KHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNP 638

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           E++      M+   +  +L  FN LL  L K+  V  A+ +   MKD+ F+PD+ T+SIL
Sbjct: 639 EKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSIL 698

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
            +G+  +     A  ++   VD+G   +  T  I+++ LCK G++++A  I+    +   
Sbjct: 699 FDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGL 758

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   +Y+ ++  Y  +  +  A      MEK G+  D   YN LI  FC+    +N  +
Sbjct: 759 VPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQ 818

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
            +  M  KGV+P+  T NI++ G   + E D+ + + + M       +  +Y  +I   C
Sbjct: 819 EVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLC 878

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +G +L +A  V + M+ +   P++  +++LI+G C KG + D+    E+M +KGI  +  
Sbjct: 879 KGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLV 938

Query: 446 TFGKLRKLLIKEGR----EDVL 463
           T+  L   L   G+    ED+L
Sbjct: 939 TYNTLIDGLSMNGKLAEAEDML 960



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 176/357 (49%), Gaps = 3/357 (0%)

Query: 103 MIESLAKIRQYQIMWDL-VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +++ L K +Q+++  ++ +N + +    +   +   ++   ++  V + +  FN M+   
Sbjct: 523 LLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR 582

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           ++  +  +N L+  LCK + ++ A+++FD M   R +P   TY+ L++G+ KD N  ++ 
Sbjct: 583 ISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSF 642

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++   M      P ++T+  ++  L KAG V++A  ++  M      P +F +S+L   Y
Sbjct: 643 KVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGY 702

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              ++ + A+  +     +G+  +    + L+ A CK  + +    +L    +KG+ PN 
Sbjct: 703 SSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNE 762

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
              N +++G   +G+   A      M K   + D   Y  +I+ FC+ G++E A +    
Sbjct: 763 VLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNK 822

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           MKLK   PS+ T+++LI G   K        LL++M + G  P+  ++G L   L K
Sbjct: 823 MKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCK 879



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 169/357 (47%), Gaps = 7/357 (1%)

Query: 87   AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145
            A ++Q  +    AY+ +I +  ++   +     VN M+ K +  +VET+ I++  Y R  
Sbjct: 787  AMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKY 846

Query: 146  KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
            + ++       M+  G   N+ ++  L++ LCK   + +AQ +   M+DR + P+ + Y+
Sbjct: 847  EFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYN 906

Query: 205  ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            +L++G      +  A     EM   G   ++VTY  ++D L   G++ EA  ++  +   
Sbjct: 907  MLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRK 966

Query: 265  VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              +P  F Y+ L+  Y     ++  +  + EM+ +GI   +  Y+ LI + C     +  
Sbjct: 967  GLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLI-SLCTKEGIELT 1025

Query: 325  YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKM 383
             ++  +M+   + P+    N +L+     G+ D+A+ + ++MI K    D  TY  +I  
Sbjct: 1026 KKIFGEMS---LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILG 1082

Query: 384  FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
              + G+L +   +   MK +   P   T+ +++ G C+      + V   +M EKG+
Sbjct: 1083 QLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGL 1139



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 139/298 (46%), Gaps = 2/298 (0%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSI 205
           + EA   F  ++  G+  +  +   LL  L K+K  R    +F + ++  F P    Y  
Sbjct: 498 ISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 557

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
            ++   K  ++ +  E+F  M     +P +  Y +++D LCK  ++ +A  +   M +  
Sbjct: 558 AIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARR 617

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P+   Y+ L+  Y  +   E +      M+ + I   +  +N L+    KA   ++  
Sbjct: 618 LLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAE 677

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
            VL +M  +G  P++ T +I+ +G     + D A  V+   +    + +A T ++++   
Sbjct: 678 NVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNAL 737

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           C+ G++EKA ++      K  +P+   ++ +I+G   KG +  + + ++ M ++G++P
Sbjct: 738 CKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKP 795



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 3/275 (1%)

Query: 172 LLSALC-KSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           LLS L  +SK + +A ++F  +++  I P S + ++LL+   K         +F  ++++
Sbjct: 487 LLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILES 546

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
              P    YG  +    K   V + L +   M      PT FIY+VL+       +++DA
Sbjct: 547 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDA 606

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F EM    +L  +  YN LI  +CK    +  ++V + M +  + P+  T N +L G
Sbjct: 607 EQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKG 666

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   G  ++A  V   M  +    DA T++++   +    + + A  V++         +
Sbjct: 667 LFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMN 726

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            +T S+L+N LC +G +  +  +L   + KG+ P+
Sbjct: 727 AYTCSILLNALCKEGQIEKAEEILGREMAKGLVPN 761



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 1/215 (0%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y ++  +L ++  + EA  +  ++ +    P+S   ++L+       +    ++ FL +
Sbjct: 484 SYLLLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNI 543

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            ++       MY   I A  K +       +   M    ++P     N++++GL    + 
Sbjct: 544 LESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQM 603

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            +A ++F  M+ +       TY  +I  +C+ G  EK+FKV + MK     PS+ TF+ L
Sbjct: 604 KDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTL 663

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + GL   G+V D+  +L +M ++G  P   TF  L
Sbjct: 664 LKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSIL 698



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 119/256 (46%), Gaps = 10/256 (3%)

Query: 84   FKWAEK--QQNYEHSVRAYHSMIESLA---KIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
            F+++E+  ++  E ++  Y+++I+ L+   K+ + + M  L+   R     +V T+  ++
Sbjct: 922  FRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDM--LLEISRKGLKPDVFTYNSLI 979

Query: 139  RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP 198
              Y     V+  +  +  M+  G+   L  ++ LL +LC  + +   ++IF  M     P
Sbjct: 980  SGYRFAGNVQRCIALYEEMKTSGIKPTLKTYH-LLISLCTKEGIELTKKIFGEMS--LQP 1036

Query: 199  DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
            D   Y+ +L  +    ++ +A  + ++M++     D  TY  ++    K G++ E   ++
Sbjct: 1037 DLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLI 1096

Query: 259  KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
              M +    P +  Y ++V  +        A   + EM++ G+L DV + + L+    + 
Sbjct: 1097 DEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDELVSGLKEE 1156

Query: 319  NKFKNVYRVLKDMNSK 334
             + K    V+ +MN +
Sbjct: 1157 WRSKEAENVISEMNGR 1172



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 40/273 (14%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-I 188
            NV  + +++       K+E+A      M K G+  NL  +N L+  L  +  + +A++ +
Sbjct: 901  NVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDML 960

Query: 189  FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             +  +    PD  TY+ L+ G+    N+ R   ++ EM  +G  P + TY +++ +  K 
Sbjct: 961  LEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKE 1020

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G ++    I   M     +P   +Y+ ++H Y V   ++ A +   +M +  I  D   Y
Sbjct: 1021 G-IELTKKIFGEMS---LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTY 1076

Query: 309  NALI-----------------------------------GAFCKANKFKNVYRVLKDMNS 333
            N+LI                                      C+   +   Y   ++M  
Sbjct: 1077 NSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQE 1136

Query: 334  KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            KG+  +    + +++GL     + EA  V   M
Sbjct: 1137 KGLLLDVCIGDELVSGLKEEWRSKEAENVISEM 1169



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 21/246 (8%)

Query: 244 VLCKAGRVDEALGIVKSM---DS-------------TVCRPT---SFIYSVLVHTYGVEN 284
           VL +  R++ A G++ S+   DS             ++  P+    F Y +L        
Sbjct: 437 VLLQQNRIETARGVLYSLLRSDSAPFTSPKELFSAFSLSSPSLKHDFSYLLLSVLLNESK 496

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            I +A D F  +   GI         L+    K  +F+    V  ++      P+     
Sbjct: 497 MISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYG 556

Query: 345 IILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
             +   +   +  +   +F RM           Y ++I   C+  +++ A +++  M  +
Sbjct: 557 KAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLAR 616

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
           R +PS+ T++ LI+G C  G    S  + E M    I PS  TF  L K L K G  ED 
Sbjct: 617 RLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDA 676

Query: 463 LKFLQE 468
              L E
Sbjct: 677 ENVLTE 682



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT----YTMMIKMFCQ 386
           + ++G+ P+S +  ++L+ L+   +      VF   + + E+D       Y   I+   +
Sbjct: 508 LRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVF---LNILESDFRPSKFMYGKAIQAAVK 564

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             ++ K  +++  MK  R  P++  ++VLI+GLC    + D+  L ++M+ + + PS  T
Sbjct: 565 LSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLIT 624

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +  L     K+G  +    ++E+M     EP
Sbjct: 625 YNTLIDGYCKDGNPEKSFKVRERMKADNIEP 655


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  ++EEA    N M   G   ++  FN L++ALC    + +A ++ 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 190 DCMKDRFI-PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
             +  + + PD  T++IL+    K  DP+L  A  +F EM ++GC PD VTY  ++D LC
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHL--ALRLFEEMKNSGCTPDEVTYNTLIDNLC 437

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G++ +AL ++K M+ST C  ++  Y+ ++     + RIE+A + F +M+  GI  +  
Sbjct: 438 SLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   CK  K  + + ++  M S+G+ PN+ T N IL     +G+  +A  +   M
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D  TY  +I   C+ G  + A KV + M++K   P+   ++ ++  L  +  +
Sbjct: 558 TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617

Query: 426 SDSCVLLEDMIEKGIRPSGETF 447
            D+  L  +M E G  P   T+
Sbjct: 618 RDALSLFREMAEVGEPPDALTY 639



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 181/369 (49%), Gaps = 11/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFN 155
           V  +++++++L +  Q +    ++  M ++ +   ET F  +M+ +     +E A+    
Sbjct: 181 VVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 240

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTYSILLEGW 210
            M + G +      N L++  CK   V  A     QEI     D F PD  TY+  + G 
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEI----ADGFEPDQITYNTFVNGL 296

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++ ++  A ++   MV  G +PD+ TY I+V+ LCK G+++EA GI+  M    C P  
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             ++ L+      NR+E+A+D   ++   G+  DV  +N LI A CK        R+ ++
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M + G  P+  T N +++ L   G+  +A  + + M    C     TY  +I   C+   
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +E+A +V+  M L+    +  TF+ LI+GLC    + D+  L+  MI +G++P+  T+  
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 450 LRKLLIKEG 458
           +     K+G
Sbjct: 537 ILTHYCKQG 545



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 163/332 (49%), Gaps = 4/332 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++I +L    + +   DL   +  K +  +V TF I++    +V     A+  F 
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDP 214
            M+  G T +   +N L+  LC    + KA ++   M+    P S  TY+ +++G  K  
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F +M   G + + +T+  ++D LCK  ++D+A  ++  M S   +P +  Y+
Sbjct: 476 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 535

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y  +  I+ A D    M  NG   DV  Y  LI   CKA + +   +VL+ M  K
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEK 392
           G+ P  +  N +L  L  R    +A  +FR M ++ E  DA TY ++ +  C+GG  +++
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 655

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           AF     M  K FIP   +F +L  GL + G+
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGM 687



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 166/334 (49%), Gaps = 5/334 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSI 205
           V  A+   +VM + G   ++  +N +++ LCK+  + +A+ I + M DR  +PD  T++ 
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+        L  A ++ R++   G +PD+ T+ I+++ LCK G    AL + + M ++ 
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P    Y+ L+       ++  A+D   +ME  G       YN +I   CK  + +   
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            V   M+ +G++ N+ T N +++GL    + D+A+ +  +MI +  + +  TY  ++  +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G+++KA  + + M    F   + T+  LINGLC  G    +  +L  M  KG+RP+ 
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 445 ETFGK-LRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           + +   L+ L  +    D L   +E     V EP
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAE--VGEP 633



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 201/426 (47%), Gaps = 17/426 (3%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL 107
           +L+ AL +      PE+ E+++ K    G L       AE +++ ++  +   HS ++S 
Sbjct: 60  MLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSY 119

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV------QKVEEAVYTFNVMQKYG 161
              + +    DL+   + + +  ++   ++      V       K+ E+VY+   M   G
Sbjct: 120 EGQQLFDDAVDLI-LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYS--EMGARG 176

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           +  ++  FN L+ ALC++  VR A  + + M  R + PD  T++ L++G+ ++ ++  A 
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +   M++ GC+   VT  ++++  CK GRV++ALG ++   +    P    Y+  V+  
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              + +  A+     M + G   DV  YN ++   CK  + +    +L  M  +G  P+ 
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N ++  L      +EA  + R++ +K    D  T+ ++I   C+ G+   A ++++ 
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF-----GKLRKLL 454
           MK     P   T++ LI+ LC  G +  +  LL+DM   G   S  T+     G  +K+ 
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 455 IKEGRE 460
           I+E  E
Sbjct: 477 IEEAEE 482



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 184/423 (43%), Gaps = 56/423 (13%)

Query: 9   NKMIS-GCISFLRRYNS-------SEPSTEALDAAKSISKIMLSSPKV----VLDTALDQ 56
           N+M+  GC+  +  +N+            EALD A+ ++ +   SP V    +L  AL +
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCK 403

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
            G    P +   + E+ +N+G                      Y+++I++L  + +    
Sbjct: 404 VG---DPHLALRLFEEMKNSGCTP---------------DEVTYNTLIDNLCSLGKLGKA 445

Query: 117 WDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            DL+  M  T    +  T+  I+    +  ++EEA   F+ M   G+++N   FN L+  
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK K +  A E+ + M  +   P++ TY+ +L  + K  ++ +A +I   M   G   D
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTYG +++ LCKAGR   AL +++ M     RPT   Y+ ++ +    N I DA+  F 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 295 EMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           EM + G   D   Y  +    C+     K  +  + +M  KG  P   +  ++  GL+  
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 354 GETD---EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           G  D    A  +    + L E+D                      +  Y+K+++F  ++ 
Sbjct: 686 GMDDYFIRAIEIIMEKVDLRESDVSA-------------------IRGYLKIRKFYDALA 726

Query: 411 TFS 413
           TF 
Sbjct: 727 TFG 729



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 161/395 (40%), Gaps = 38/395 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIM 138
           A      A  + ++      Y  +I  L  +    +M  LV  MR +   + +      +
Sbjct: 57  ALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL 116

Query: 139 RKYARVQKVEEAV-YTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
             Y   Q  ++AV    N +Q  +G+  +   +N LL+ L +   ++             
Sbjct: 117 DSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMK------------- 163

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                    LLE             ++ EM   G  PD+VT+  ++  LC+A +V  A+ 
Sbjct: 164 ---------LLE------------SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVI 202

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++ M S    P    ++ L+  +  E  IE A+     M + G  A     N LI  +C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADAD 375
           K  + ++    ++   + G  P+  T N  +NGL        A +V   M++   + D  
Sbjct: 263 KLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY +++   C+ G+LE+A  +   M  +  +P + TF+ LI  LC    + ++  L   +
Sbjct: 323 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG+ P   TF  L   L K G   +   L E+M
Sbjct: 383 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 192/414 (46%), Gaps = 23/414 (5%)

Query: 58  GIRVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G  ++  I+  VL      G  +++ FFKW E   N+ HS+++  +MI +LAK +Q++  
Sbjct: 35  GSNLTSTILNQVLLNLSLDGCCVSWAFFKWVESNLNHXHSLQSSWTMIHTLAKHKQFKTA 94

Query: 117 WDLVNAMRTKRML------------------NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            +L+  +  +  L                  N +    ++  YA  +  ++A+  F  M+
Sbjct: 95  QNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMR 154

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
            +G   +L A   LL++L K++      +++  M +   +P+   +++L+    K  ++ 
Sbjct: 155 VHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVE 214

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A ++  EM      PD+ TY  ++ + CK G   EALGI   M+     P    Y+ L+
Sbjct: 215 KAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI 274

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +  E R+ +A+  F E+  NG   +   Y  LI  +C+ N  +   R+ + M  +G+ 
Sbjct: 275 YGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLH 332

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P   T N IL  L   G+  +A R+   M  +  E D  T   +I  +C+ G++  A KV
Sbjct: 333 PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 392

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            K M      P   TF  LI+G C    V  +   L +M++ G  PS  T+  L
Sbjct: 393 KKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWL 446



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%), Gaps = 1/212 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  ++  Y RV  +EEA+    VM+  G+   +  +N +L  LC+   ++ A  + 
Sbjct: 299 NHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLL 358

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M +R + PD+ T + L+  + K  ++  A ++ ++M++ G  PD  T+  ++   CK 
Sbjct: 359 NEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKL 418

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             VD A   +  M      P+   YS LV +Y  ++  E  +    E+ + G+  D+++Y
Sbjct: 419 HEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVY 478

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
            ALI   CK +K ++  R+   M  KG+  +S
Sbjct: 479 RALIRRLCKIDKIESAERIFTLMQGKGMKGDS 510



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 40/351 (11%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
             ++  + A   ++ SLAK R   ++W +   M R   + N+  F +++    +   VE+
Sbjct: 156 HGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEK 215

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A    N M+   +  +L  +N L+S  CK     +A  I D M+   + PD  TY+ L+ 
Sbjct: 216 AEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIY 275

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ ++  +  A  +FRE+   G  P+ VTY  ++D  C+   ++EAL + + M+     P
Sbjct: 276 GFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHP 333

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----------------------------- 299
               Y+ ++     E +I+DA     EM +                              
Sbjct: 334 GVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVK 393

Query: 300 ------GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
                 G+  D   + ALI  FCK ++  +    L +M   G +P+  T + +++    +
Sbjct: 394 KKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQ 453

Query: 354 GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
              +   R+   +  K    D   Y  +I+  C+  ++E A +++  M+ K
Sbjct: 454 DNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 504



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 2/221 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFN 155
           V  Y+S++  L +  + +    L+N M  +++      C  ++  Y ++  +  A+    
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK 394

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M + G+  +   F  L+   CK   V  A+E +F+ +   F P   TYS L++ +    
Sbjct: 395 KMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQD 454

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N      +  E+   G   DI  Y  ++  LCK  +++ A  I   M     +  S +Y+
Sbjct: 455 NKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYT 514

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            L + Y    +   A D   EM+K  ++  + +Y     ++
Sbjct: 515 SLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASY 555


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 167/328 (50%), Gaps = 3/328 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F ++MR + R+ ++  A   F+ M++  V   +  FN L+S +C+++++     ++  M 
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGLYKEMS 247

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           D  + PD  TY  L++G+ +   +  A ++F EM DTG NP+ V +  ++D  CK G V+
Sbjct: 248 DVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVN 307

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
             + + + M      P    Y+ LV+       ++ A     EM+  G+  D   Y  LI
Sbjct: 308 AGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLI 367

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-E 371
              CK  K      + + M  K V+ +  T   +++GL   G   +A RV R M++   E
Sbjct: 368 DGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALE 427

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYTM+I  FC+ G+++  FK+ K M+ K   P + T++V++NGLC  G + ++ +L
Sbjct: 428 PDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADML 487

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L  M+  G+ P   T+  L     K G+
Sbjct: 488 LHAMLNIGVSPDDITYNILLDGQCKHGK 515



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 167/357 (46%), Gaps = 6/357 (1%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           ++  F   G L      + E +++ + +V  ++++I  + + R    +  L   M    +
Sbjct: 192 LMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGV 251

Query: 129 -LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +V T+  +++ + R  ++E AV  FN M+  GV  N   F  L+ A CK  NV    +
Sbjct: 252 KPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMD 311

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           ++  M+ R  +PD   Y+ L+ G  +  NL  A  I  EM + G  PD VTY  ++D  C
Sbjct: 312 LYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCC 371

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G++D A+ I + M           Y+ L+       R  DA     EM +  +  D  
Sbjct: 372 KDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNT 431

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  +I AFC+    K  +++LK+M +KG  P   T N+I+NGL   G+   A  +   M
Sbjct: 432 TYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAM 491

Query: 367 IKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           + +  +  D TY +++   C+ G++  + ++      K  +P    ++ LI+ L  K
Sbjct: 492 LNIGVSPDDITYNILLDGQCKHGKVANSEELESS---KGMVPDFAVYTSLISELAKK 545



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
           P+ P A   + +++D G  P+   + +++    + G +  A  +   M  +V +PT   +
Sbjct: 165 PSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSV-QPTVVTF 223

Query: 274 SVLVHTYGVENRIEDAVDT-FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           + L+       R  DAVD  + EM   G+  DV  Y ALI  FC+  + +N  ++  +M 
Sbjct: 224 NTLISGM-CRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMR 282

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392
             GV PN                                  A  +T +I   C+ G +  
Sbjct: 283 DTGVNPN----------------------------------AVVFTTLIDAHCKEGNVNA 308

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
              +++ M+++  +P +  ++ L+NGLC    +  +  ++E+M   G++P   T+  L  
Sbjct: 309 GMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLID 368

Query: 453 LLIKEGREDVLKFLQEKM 470
              K+G+ D+   +++KM
Sbjct: 369 GCCKDGKLDMAMDIKQKM 386



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           + S L   Y  E  + DA    L   + GI     + + L+       +    Y  L D 
Sbjct: 121 LVSELAAAYADEGLLPDACSLVLLALRRGISLPAPVCSGLMSRLPSTPEAYTFYLQLLD- 179

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G+AP +R  N+++   +  GE   A +VF  M +  +    T+  +I   C+  +L+
Sbjct: 180 --AGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLD 237

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
               ++K M      P ++T+  LI G C  G + ++  +  +M + G+ P+   F  L 
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297

Query: 452 KLLIKEG 458
               KEG
Sbjct: 298 DAHCKEG 304


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 157/310 (50%), Gaps = 19/310 (6%)

Query: 153 TFNVMQKY------GVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSI 205
           T  VM +Y      G+  NL  +N +++ALCK  NVR A+ I +   K    PD+ TY+ 
Sbjct: 209 TSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTS 268

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           ++ G+ ++ +L  A EIF  M + GC P+  TY  +++ LC +GRV+EAL  +  M    
Sbjct: 269 MILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHG 328

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             PT   ++  +       RIEDA   F++M+K G   +V  Y +LI         + V 
Sbjct: 329 VLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG-------QRVS 381

Query: 326 R----VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           R    +   M+  GV PN+ T N ++N L+   E D A  VF  M K  C  +  +Y  +
Sbjct: 382 RMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNEL 441

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I+ +C  G+ EKA  +   M   R  P++ T++++I G CD G    +  +LE M   G 
Sbjct: 442 IRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGC 501

Query: 441 RPSGETFGKL 450
           +P   ++ +L
Sbjct: 502 QPDEWSYTEL 511



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 190/380 (50%), Gaps = 7/380 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  + + I +L  + + +  W +   M+ K    NV T+  ++    RV ++  A+  F
Sbjct: 332 TVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG-QRVSRM--AIGLF 388

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + M + GV  N   +N L++ L ++  +  A  +F+ M K   +P++ +Y+ L+ G+   
Sbjct: 389 HRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTI 448

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +  +A  +   M+     P +VTY I++   C +G  D A+ +++ M +  C+P  + Y
Sbjct: 449 GDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSY 508

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +   +++E A   F EM   G+  +   Y ALI  +CK  K     R+L+ M  
Sbjct: 509 TELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKR 568

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G  PN +T N++++GL  +     A  + + M+ +    D  TY+ +I   C  G +  
Sbjct: 569 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPL 628

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M     +P++HT+S LI  L  +G V ++  +  ++ ++G+ P   T+ K+ +
Sbjct: 629 ALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIE 688

Query: 453 LLIKEGRED-VLKFLQEKMN 471
           + +  G+ D    FL E +N
Sbjct: 689 VCVMSGKVDRAFDFLGEMIN 708



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 159/331 (48%), Gaps = 4/331 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  +M       +++ A+  FN+M K+G   N +++N L+   C   +  KA  + 
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSML 458

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + +K R  P   TY+I+++G+    +   A  +   M   GC PD  +Y  ++   CK 
Sbjct: 459 TNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKI 518

Query: 249 GRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            +++ A G+   M D  +C P    Y+ L+  Y  + +++ A      M+++G   +V  
Sbjct: 519 SKMELASGMFNEMMDRGLC-PNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQT 577

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI    K N F     + K M  + ++P+  T + ++NGL   G    A  +F +M+
Sbjct: 578 YNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMV 637

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K  C  +  TY+ +I+   Q G +E+A +++  +K +  IP   T+  +I      G V 
Sbjct: 638 KHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVD 697

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
            +   L +MI  G +P+ +T+  L K L  E
Sbjct: 698 RAFDFLGEMINAGCQPTLQTYDVLIKGLQNE 728



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 178/381 (46%), Gaps = 13/381 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S+I +L K    +    ++N +    M  +  T+  ++  Y R + ++ A   FN M 
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G   N A ++ L++ LC S  V +A + I +  +   +P   T++  +        + 
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIE 350

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE-ALGIVKSMDSTVCRPTSFIYSVL 276
            A +IF +M   GC P++ TY  ++       RV   A+G+   M      P +  Y+ L
Sbjct: 351 DAWKIFIDMKKKGCKPNVYTYTSLIS----GQRVSRMAIGLFHRMSRDGVVPNTVTYNAL 406

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++       I+ A+  F  M K+G L + + YN LI  +C     +    +L +M     
Sbjct: 407 MNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRP 466

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            P   T NII+ G    G+TD A RV   M    C+ D  +YT +I  FC+  ++E A  
Sbjct: 467 TPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASG 526

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  M  +   P+  T++ LI+G C    +  +  +LE M   G RP+ +T+  L   L 
Sbjct: 527 MFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLT 586

Query: 456 KE----GREDVLK-FLQEKMN 471
           K+    G E++ K  L+EK++
Sbjct: 587 KQNNFSGAEELCKVMLEEKIS 607



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 30/355 (8%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV+T+ +++    +      A     VM +  ++ ++  ++ +++ LC +  +  A E+F
Sbjct: 574 NVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMF 633

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K   +P+  TYS L++  G++  +  A E+F E+   G  PD VTY  M++V   +
Sbjct: 634 NKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMS 693

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI----------EDAVDTFLEMEK 298
           G+VD A   +  M +  C+PT   Y VL+   G++N +            +  TF +   
Sbjct: 694 GKVDRAFDFLGEMINAGCQPTLQTYDVLIK--GLQNEMVYHKLVALPNAASTSTFDDQII 751

Query: 299 NGILADV--------------AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           N  +  V               +Y+AL+    ++ ++     + + M S+   PN  T  
Sbjct: 752 NKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYK 811

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
             L  L+   + D A  VF+ M  + CE     Y  +I   CQ    ++A  V++ M  +
Sbjct: 812 HFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSR 871

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR-PSGETFGKLRKLLIKE 457
                   +++LINGL   G   D C+    ++E   R PS      L +  +KE
Sbjct: 872 ALNADEIVWTILINGLLGAG-YKDLCMEFLHIMETNRRNPSSHARTILAREALKE 925



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 169/395 (42%), Gaps = 26/395 (6%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y  +I    KI + ++   + N M  + +   E T+  ++  Y + +K++ A      M
Sbjct: 507 SYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERM 566

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
           ++ G   N+  +N L+  L K  N   A+E+   M +++  PD  TYS ++ G   +  +
Sbjct: 567 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAI 626

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
           P A E+F +MV  GC P++ TY  ++  L + GRV+EA  +   +      P    Y  +
Sbjct: 627 PLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKM 686

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA------FCKANKFKNVYR---- 326
           +    +  +++ A D   EM   G    +  Y+ LI        + K     N       
Sbjct: 687 IEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTF 746

Query: 327 --------VLKDMNSKGVAPNSRTCNIILNGLIGR----GETDEAYRVFRRMIKLCE-AD 373
                   V+  ++SK    +      + + L+ R    G   EA  ++R M+   +  +
Sbjct: 747 DDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPN 806

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
            DTY   +    +  +++ A  V+K+M  +R    +  +  LI  LC      ++  + E
Sbjct: 807 QDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFE 866

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQ 467
            M+ + +      +  L   L+  G +D+ ++FL 
Sbjct: 867 KMLSRALNADEIVWTILINGLLGAGYKDLCMEFLH 901



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 128/328 (39%), Gaps = 59/328 (17%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K+     +V+ Y+ +I  L K   +    +L   M  +++  +V T+  ++        +
Sbjct: 567 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAI 626

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
             A+  FN M K+G   NL  ++ L+ AL +   V +A+E+F  +K +  IPD  TY  +
Sbjct: 627 PLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKM 686

Query: 207 LEGWGKDPNLPRAREIFREMVDTGC----------------------------------- 231
           +E       + RA +   EM++ GC                                   
Sbjct: 687 IEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTF 746

Query: 232 -----NPDIVT-----------------YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                N D+++                 Y  ++  L ++GR  EA  + +SM S    P 
Sbjct: 747 DDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPN 806

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y   + +     +++ A+D F  M        +  Y  LI   C+ ++ K    V +
Sbjct: 807 QDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFE 866

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETD 357
            M S+ +  +     I++NGL+G G  D
Sbjct: 867 KMLSRALNADEIVWTILINGLLGAGYKD 894


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 172/333 (51%), Gaps = 6/333 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  ++EEA    N M   G   ++  FN L++ALC    + +A ++ 
Sbjct: 228 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 287

Query: 190 DCMKDRFI-PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
             +  + + PD  T++IL+    K  DP+L  A  +F EM ++GC PD VTY  ++D LC
Sbjct: 288 RQVTVKGVSPDVYTFNILINALCKVGDPHL--ALRLFEEMKNSGCTPDEVTYNTLIDNLC 345

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G++ +AL ++K M+ST C  ++  Y+ ++     + RIE+A + F +M+  GI  +  
Sbjct: 346 SLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 405

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   CK  K  + + ++  M S+G+ PN+ T N IL     +G+  +A  +   M
Sbjct: 406 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 465

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D  TY  +I   C+ G  + A KV + M++K   P+   ++ ++  L  +  +
Sbjct: 466 TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 525

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            D+  L  +M E G  P   T+  + + L + G
Sbjct: 526 RDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 558



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 181/369 (49%), Gaps = 11/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFN 155
           V  +++++++L +  Q +    ++  M ++ +   ET F  +M+ +     +E A+    
Sbjct: 89  VVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 148

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTYSILLEGW 210
            M + G +      N L++  CK   V  A     QEI     D F PD  TY+  + G 
Sbjct: 149 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEI----ADGFEPDQITYNTFVNGL 204

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++ ++  A ++   MV  G +PD+ TY I+V+ LCK G+++EA GI+  M    C P  
Sbjct: 205 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 264

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             ++ L+      NR+E+A+D   ++   G+  DV  +N LI A CK        R+ ++
Sbjct: 265 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 324

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M + G  P+  T N +++ L   G+  +A  + + M    C     TY  +I   C+   
Sbjct: 325 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 384

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +E+A +V+  M L+    +  TF+ LI+GLC    + D+  L+  MI +G++P+  T+  
Sbjct: 385 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 444

Query: 450 LRKLLIKEG 458
           +     K+G
Sbjct: 445 ILTHYCKQG 453



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 163/332 (49%), Gaps = 4/332 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++I +L    + +   DL   +  K +  +V TF I++    +V     A+  F 
Sbjct: 264 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 323

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDP 214
            M+  G T +   +N L+  LC    + KA ++   M+    P S  TY+ +++G  K  
Sbjct: 324 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 383

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F +M   G + + +T+  ++D LCK  ++D+A  ++  M S   +P +  Y+
Sbjct: 384 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYN 443

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y  +  I+ A D    M  NG   DV  Y  LI   CKA + +   +VL+ M  K
Sbjct: 444 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 503

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEK 392
           G+ P  +  N +L  L  R    +A  +FR M ++ E  DA TY ++ +  C+GG  +++
Sbjct: 504 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 563

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           AF     M  K FIP   +F +L  GL + G+
Sbjct: 564 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGM 595



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 166/334 (49%), Gaps = 5/334 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSI 205
           V  A+   +VM + G   ++  +N +++ LCK+  + +A+ I + M DR  +PD  T++ 
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 269

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+        L  A ++ R++   G +PD+ T+ I+++ LCK G    AL + + M ++ 
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P    Y+ L+       ++  A+D   +ME  G       YN +I   CK  + +   
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 389

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            V   M+ +G++ N+ T N +++GL    + D+A+ +  +MI +  + +  TY  ++  +
Sbjct: 390 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 449

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G+++KA  + + M    F   + T+  LINGLC  G    +  +L  M  KG+RP+ 
Sbjct: 450 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 509

Query: 445 ETFGK-LRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           + +   L+ L  +    D L   +E     V EP
Sbjct: 510 KAYNPVLQSLFRRNNIRDALSLFREMAE--VGEP 541



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 181/385 (47%), Gaps = 24/385 (6%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142
           F    E QQ ++ +V    + ++ L  I+   ++++         +LNV           
Sbjct: 23  FLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYN--------HLLNVLV-------EG 67

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSK 201
              K+ E+VY+   M   G+  ++  FN L+ ALC++  VR A  + + M  R + PD  
Sbjct: 68  SKMKLLESVYS--EMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDET 125

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           T++ L++G+ ++ ++  A  +   M++ GC+   VT  ++++  CK GRV++ALG ++  
Sbjct: 126 TFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQE 185

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +    P    Y+  V+     + +  A+     M + G   DV  YN ++   CK  + 
Sbjct: 186 IADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 245

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMM 380
           +    +L  M  +G  P+  T N ++  L      +EA  + R++ +K    D  T+ ++
Sbjct: 246 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 305

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+ G+   A ++++ MK     P   T++ LI+ LC  G +  +  LL+DM   G 
Sbjct: 306 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 365

Query: 441 RPSGETF-----GKLRKLLIKEGRE 460
             S  T+     G  +K+ I+E  E
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEE 390



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 184/423 (43%), Gaps = 56/423 (13%)

Query: 9   NKMIS-GCISFLRRYNS-------SEPSTEALDAAKSISKIMLSSPKV----VLDTALDQ 56
           N+M+  GC+  +  +N+            EALD A+ ++ +   SP V    +L  AL +
Sbjct: 253 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCK 311

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
            G    P +   + E+ +N+G                      Y+++I++L  + +    
Sbjct: 312 VG---DPHLALRLFEEMKNSGCTP---------------DEVTYNTLIDNLCSLGKLGKA 353

Query: 117 WDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            DL+  M  T    +  T+  I+    +  ++EEA   F+ M   G+++N   FN L+  
Sbjct: 354 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 413

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK K +  A E+ + M  +   P++ TY+ +L  + K  ++ +A +I   M   G   D
Sbjct: 414 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 473

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTYG +++ LCKAGR   AL +++ M     RPT   Y+ ++ +    N I DA+  F 
Sbjct: 474 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 533

Query: 295 EMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           EM + G   D   Y  +    C+     K  +  + +M  KG  P   +  ++  GL+  
Sbjct: 534 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 593

Query: 354 GETD---EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           G  D    A  +    + L E+D                      +  Y+K+++F  ++ 
Sbjct: 594 GMDDYFIRAIEIIMEKVDLRESDVSA-------------------IRGYLKIRKFYDALA 634

Query: 411 TFS 413
           TF 
Sbjct: 635 TFG 637



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 11/298 (3%)

Query: 184 KAQEIFDCMKDRFI----------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           + Q++FD   D  +           D+  Y+ LL    +   +     ++ EM   G  P
Sbjct: 28  EGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKP 87

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+VT+  ++  LC+A +V  A+ +++ M S    P    ++ L+  +  E  IE A+   
Sbjct: 88  DVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVK 147

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M + G  A     N LI  +CK  + ++    ++   + G  P+  T N  +NGL   
Sbjct: 148 ARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQN 207

Query: 354 GETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
                A +V   M++   + D  TY +++   C+ G+LE+A  +   M  +  +P + TF
Sbjct: 208 DHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTF 267

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + LI  LC    + ++  L   +  KG+ P   TF  L   L K G   +   L E+M
Sbjct: 268 NTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 325


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 179/372 (48%), Gaps = 11/372 (2%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVY 152
           +  V   +++I++L +  Q +    ++  M +  +   ET F  +M+ +     +E A+ 
Sbjct: 194 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALR 253

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTYSILL 207
               M + G +      N L++  CK   V  A     QEI     D F PD  TY+  +
Sbjct: 254 VKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEI----ADGFEPDQVTYNTFV 309

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  ++ ++  A ++   M+  G +PD+ TY  +++ L K G +DEA GIV  M    C 
Sbjct: 310 HGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL 369

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  ++ L+     +NR+E+A+D   E+   G+  DV  +N LI A CK        R+
Sbjct: 370 PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 429

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
            ++M S G  P+  T NI+++ L   G+   A  +   M    C     TY  +I   C+
Sbjct: 430 FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCK 489

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              +E+A +V+  M  +    S  TF+ LI+GLC    + D+  L+E M+++G++P+  T
Sbjct: 490 KMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNIT 549

Query: 447 FGKLRKLLIKEG 458
           +  +     K+G
Sbjct: 550 YNSILTHYCKQG 561



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 167/344 (48%), Gaps = 4/344 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++++I +L+   + +   DL   +  K +  +V TF I++    +V      +  F  M+
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 434

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLP 217
             G T +   +N L+  LC    +  A ++ + M+    P S  TY+ +++   K   + 
Sbjct: 435 SSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIE 494

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+F +M   G +   VT+  ++D LCKA R+D+A  +++ M     +P +  Y+ ++
Sbjct: 495 EAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSIL 554

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  +  I+ A D    M  NG   DV  Y  LI   CKA + +   ++L+ M  KG+ 
Sbjct: 555 THYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIR 614

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEKAFK 395
           P  +  N ++  L  R    +A  +FR M ++ E  DA TY ++ +  C+GG  +++AF 
Sbjct: 615 PTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFD 674

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
               M  K F+P   +F +L  GL + G+       +E +IEK 
Sbjct: 675 FLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEKA 718



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 172/351 (49%), Gaps = 14/351 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++   ++  +++EA    N M   G   +   FN L+ AL  S+N  + +E  
Sbjct: 336 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVAL-SSQN--RLEEAL 392

Query: 190 DCMKDRFI----PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           D  ++  +    PD  T++IL+    K  DP+L     +F EM  +GC PD VTY I++D
Sbjct: 393 DLARELTVKGLSPDVYTFNILINALCKVGDPHL--GIRLFEEMKSSGCTPDEVTYNILID 450

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LC  G++  AL ++  M+S  C  ++  Y+ ++     + RIE+A + F +M+  GI  
Sbjct: 451 HLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISR 510

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
               +N LI   CKA +  +   +++ M  +G+ PN+ T N IL     +G   +A  + 
Sbjct: 511 SAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADIL 570

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
             M     E D  TY  +I   C+ G  + A K+ + M++K   P+   ++ +I  L  +
Sbjct: 571 ETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRR 630

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR--EDVLKFLQEKMN 471
             + D+  L  +M E G  P   T+  + + L + G   ++   FL E +N
Sbjct: 631 NNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVN 681



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 179/399 (44%), Gaps = 13/399 (3%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK----RMLNVETFC 135
           A      A  ++++  S   Y  +++ L     + +M  LV  MR +    R + V +F 
Sbjct: 72  ALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSF- 130

Query: 136 IIMRKYARVQKVEEAV-YTFNVMQK--YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
             +  YAR+++ ++AV    N +    +GV  +   FN LL+ L +   ++  + +++ M
Sbjct: 131 --VESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R I PD  T + L++   +   +  A  +  EM   G  PD  T+  ++    + G +
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSI 248

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           + AL +   M    C PT    +VL++ Y    R+EDA+    +   +G   D   YN  
Sbjct: 249 EAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTF 308

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           +   C+     +  +V+  M  +G  P+  T N ++N L   GE DEA  +  +M+ + C
Sbjct: 309 VHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 368

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  T+  +I        LE+A  + + + +K   P ++TF++LIN LC  G       
Sbjct: 369 LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 428

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           L E+M   G  P   T+  L   L   G+  + L  L E
Sbjct: 429 LFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNE 467



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 141/305 (46%), Gaps = 6/305 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           LL+AL +  +   A  + +    ++ F P S  Y  +++  G          + REM   
Sbjct: 59  LLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRRE 118

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTSFIYSVLVHTYGVENRI 286
           G     V     V+   +  R D+A+ +V +    D+   +  + +++ L++     +++
Sbjct: 119 GHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKL 178

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           +     + EM   GI  DV   N LI A C+A++ +    +L++M+S GVAP+  T   +
Sbjct: 179 KLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTL 238

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           + G I  G  + A RV  +M++  C     T  ++I  +C+ G +E A    +      F
Sbjct: 239 MQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGF 298

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P   T++  ++GLC  G VS +  +++ M+++G  P   T+  +   L K G  D  K 
Sbjct: 299 EPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKG 358

Query: 466 LQEKM 470
           +  +M
Sbjct: 359 IVNQM 363


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 177/360 (49%), Gaps = 15/360 (4%)

Query: 100 YHSMIESLAK-------IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           + S+I+ L K        R Y+ M D        ++ NV  +  ++R + +  + E+   
Sbjct: 343 FCSLIDGLGKQGRVDDAYRIYERMLD------ADQIPNVVVYTSLIRNFFKCDRKEDGHK 396

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
            +  M + G + +L   N  +  + K+    K + +F+ +K R F+PD+++YSIL+    
Sbjct: 397 MYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLV 456

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K        E++  M D GC  D   Y  ++D  CK+G+V++A  +++ M +    PT  
Sbjct: 457 KAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVV 516

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y  +V      +R+++A   F E + NGI  +  +Y++LI  F K  +    Y V+++M
Sbjct: 517 TYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEM 576

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
             KG+ PN  T N +L+GL+   E +EA   F+ M  L C  +  TY ++I   C+  + 
Sbjct: 577 MQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKF 636

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            KAF  W+ M+ +   P+  T++ +I+GL   G V+ +  L E     G  P   ++  +
Sbjct: 637 NKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAM 696



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 168/370 (45%), Gaps = 37/370 (10%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRT-KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           ++ S  K R+    +DL+  MR  K       +  ++   + V + +  +  FN MQ+ G
Sbjct: 32  LVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELG 91

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAR 220
              N+     L+    +   V  A  + D MK + F  D   Y++ ++ +GK   +  A 
Sbjct: 92  YEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAW 151

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           + F EM   G  PD VTY  M+ VLCKA                                
Sbjct: 152 KFFHEMKANGLVPDDVTYTSMMGVLCKA-------------------------------- 179

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              NR+++AV+ F +ME+N  +     YN +I  +  A KF   Y +L+   +KG  P+ 
Sbjct: 180 ---NRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSV 236

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
              N IL  L  +G+TD+A R+F  M +    +  TY ++I M C+ G +E AFKV   M
Sbjct: 237 VAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAM 296

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           K     P++ T +++I+ LC    + ++C + E M  K   P G TF  L   L K+GR 
Sbjct: 297 KEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRV 356

Query: 461 DVLKFLQEKM 470
           D    + E+M
Sbjct: 357 DDAYRIYERM 366



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 214/471 (45%), Gaps = 38/471 (8%)

Query: 37  SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEH 95
           ++S++  S   + L   + + G  V+  ++  ++  F   G +        E + N ++ 
Sbjct: 70  ALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDA 129

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAV--- 151
            +  Y+  I+   K+ +  + W   + M+   ++  + T+  +M    +  +++EAV   
Sbjct: 130 DIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIF 189

Query: 152 ------------YTFNVM--------------------QKYGVTQNLAAFNGLLSALCKS 179
                       Y +N M                    +  G   ++ A+N +L+ L K 
Sbjct: 190 EQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKK 249

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
               KA  IF+ MK   +P+  TY+I++    K  N+  A ++   M + G  P++ T  
Sbjct: 250 GKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTIN 309

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           IM+D LCKA ++DEA  I + MD  VC P    +  L+   G + R++DA   +  M   
Sbjct: 310 IMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDA 369

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
             + +V +Y +LI  F K ++ ++ +++ K+M   G +P+    N  ++ +   GET++ 
Sbjct: 370 DQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKG 429

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +F  +  +    D  +Y+++I    + G   + ++++  MK +  +     ++ +I+G
Sbjct: 430 RALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDG 489

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            C  G V+ +  LLE+M   G  P+  T+G +   L K  R D    L E+
Sbjct: 490 FCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEE 540



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 184/375 (49%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       ++   + L+   R K  + +V  +  I+    +  K ++A+  F  M
Sbjct: 203 AYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM 262

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           ++     NL  +N ++  LCK+ NV  A ++ D MK+    P+ +T +I+++   K   L
Sbjct: 263 KR-DAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKL 321

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF  M    C+PD  T+  ++D L K GRVD+A  I + M      P   +Y+ L
Sbjct: 322 DEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSL 381

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   +R ED    + EM ++G   D+ + N  +    KA + +    + +++ ++G 
Sbjct: 382 IRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGF 441

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P++R+ +I+++ L+  G   E Y ++  M  + C  D   Y  +I  FC+ G++ KA++
Sbjct: 442 LPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQ 501

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK     P++ T+  +++GL     + ++ +L E+    GI  +   +  L     
Sbjct: 502 LLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFG 561

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E+M
Sbjct: 562 KVGRVDEAYLVMEEM 576



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 187/429 (43%), Gaps = 43/429 (10%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           ++  YE +V    ++I   ++  +      L++ M++     ++  + + +  + +V KV
Sbjct: 88  QELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKV 147

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
           + A   F+ M+  G+  +   +  ++  LCK+  + +A EIF+ M ++R +P +  Y+ +
Sbjct: 148 DMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTM 207

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM--DST 264
           + G+G       A  +       GC P +V Y  ++  L K G+ D+AL I + M  D+ 
Sbjct: 208 IMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM 267

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              PT   Y++++        +E A      M++ G+  +V   N +I   CKA K    
Sbjct: 268 PNLPT---YNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEA 324

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------------- 369
             + + M+ K  +P+  T   +++GL  +G  D+AYR++ RM+                 
Sbjct: 325 CSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRN 384

Query: 370 ---CEADADTYTMMIKMFCQG------------------GELEKAFKVWKYMKLKRFIPS 408
              C+   D + M  +M   G                  GE EK   +++ +K + F+P 
Sbjct: 385 FFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPD 444

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             ++S+LI+ L   G   ++  L   M ++G       +  +     K G+ +    L E
Sbjct: 445 TRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 504

Query: 469 KMNLLVKEP 477
           +M  +   P
Sbjct: 505 EMKTMGHHP 513



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 142/326 (43%), Gaps = 14/326 (4%)

Query: 82  CFFKWAE-----------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-ML 129
           C FK  E           K + +    R+Y  +I SL K    +  ++L  AM+ +  +L
Sbjct: 419 CVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVL 478

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   +  ++  + +  KV +A      M+  G    +  +  ++  L K   + +A  +F
Sbjct: 479 DTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLF 538

Query: 190 DCMKDRFIPDSKT-YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K   I  ++  YS L++G+GK   +  A  +  EM+  G  P++ T+  ++D L KA
Sbjct: 539 EEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKA 598

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             ++EAL   +SM    C P    Y +L++      +   A   + EM+K G+  +   Y
Sbjct: 599 EEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITY 658

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
            A+I    K+        + +   + G  P+S + N ++ GL       +AY++F    +
Sbjct: 659 TAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRL 718

Query: 368 KLCEADADTYTMMIKMFCQGGELEKA 393
           K C     T   ++    +   LE+A
Sbjct: 719 KGCSIHTKTCVALLDALHKAECLEQA 744


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 199/439 (45%), Gaps = 44/439 (10%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           + P+ V  V+ +++N    A   F   + +  ++H++  Y  MIE L    +++ M D++
Sbjct: 5   LQPKHVAAVI-RYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVL 63

Query: 121 NAMRTK---RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
             MR     +ML    +  IMR Y R  KV+EAV  F  M  Y    ++ ++N +++ L 
Sbjct: 64  AEMRKNVDSKMLE-GVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILV 122

Query: 178 KSKNVRKAQEIFDCMKDRFI-PDSKTYSI------------------------------- 205
           +     +A +++  MKD  I PD  T++I                               
Sbjct: 123 EYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAV 182

Query: 206 ----LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV-KS 260
               ++ G+ K+     A  +F EM+  G  PDI+T+  ++ VLCK G V E+  +  K 
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKV 242

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M   VC P  F +++ +     +  I++A      +   G+  DV  YN LI  FCK +K
Sbjct: 243 MKRGVC-PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR-RMIKLCEADADTYTM 379
                  L  M + GV PN  T N I+NG    G    A ++ R  M K    D  TY+ 
Sbjct: 302 LVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSS 361

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C  G++ +A  V+     K F  S+  ++ L+ GL  +G+V  +  L++DM+E G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 440 IRPSGETFGKLRKLLIKEG 458
             P   T+  +   L K G
Sbjct: 422 CSPDIWTYNLVVNGLCKMG 440



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 173/381 (45%), Gaps = 39/381 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++  ++  + +  K+ EA    + M   GV  N   +N +++  CK+  ++ A +I 
Sbjct: 285 DVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKIL 344

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF------------------------- 223
            D M   FIPD  TYS L+ G   D ++ RA  +F                         
Sbjct: 345 RDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQ 404

Query: 224 ----------REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                     ++M++ GC+PDI TY ++V+ LCK G + +A GI+    +  C P  F +
Sbjct: 405 GLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTF 464

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y  +  ++ A++    M  +GI  DV  YN L+   CKA K  NV    K M  
Sbjct: 465 NTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLE 524

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           KG  PN  T NI++       +  EA  +F+ M  +    D  T   +I   C  GEL+K
Sbjct: 525 KGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDK 584

Query: 393 AFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           A++++  + K  +F  S   F+++IN  C+K  VS +  L   M      P   T+  + 
Sbjct: 585 AYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMI 644

Query: 452 KLLIKEGREDVLK-FLQEKMN 471
               K G  D+   FL E ++
Sbjct: 645 DSYCKTGNIDLAHTFLLENIS 665



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 175/360 (48%), Gaps = 3/360 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E SV++Y++++  L +   +     +   M+   +  +V T  I M+ +    +   A+ 
Sbjct: 108 EPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALR 167

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
             N M   G   N  ++  ++S   K     +A  +FD M K    PD  T++ L+    
Sbjct: 168 LLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLC 227

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K  N+  + ++F +++  G  P++ T+ I +  LC+ G +DEA  +++S+ S    P   
Sbjct: 228 KKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVI 287

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+  +   +++ +A     +M  +G+  +   YN +I  FCKA   +N  ++L+D 
Sbjct: 288 SYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDA 347

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-RRMIKLCEADADTYTMMIKMFCQGGEL 390
             KG  P+  T + ++NGL   G+ + A  VF   M K  +     Y  ++K   + G +
Sbjct: 348 MFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLV 407

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +A ++ K M      P + T+++++NGLC  G +SD+  +L D I KG  P   TF  L
Sbjct: 408 LQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTL 467



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 152/334 (45%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ TF I ++   R   ++EA      +   G+T ++ ++N L+   CK   + +A+   
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+ ++ G+ K   +  A +I R+ +  G  PD  TY  +++ LC  
Sbjct: 310 HKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A+ +         + +  +Y+ LV     +  +  A+    +M ++G   D+  Y
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTY 429

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK     +   +L D  +KG  P+  T N +++G   +   D+A  +   M+ 
Sbjct: 430 NLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS 489

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TY  ++   C+  +L+     +K M  K   P++ T+++LI   C    VS+
Sbjct: 490 HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSE 549

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +  L ++M  +G+ P   T   L   L   G  D
Sbjct: 550 AMELFKEMKTRGLTPDIVTLCTLICGLCSNGELD 583



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 147/327 (44%), Gaps = 46/327 (14%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           F++  EK   ++HS+  Y+++++ L+K    ++  Q+M D+   M      ++ T+ +++
Sbjct: 379 FYEAMEK--GFKHSIILYNTLVKGLSKQGLVLQALQLMKDM---MEHGCSPDIWTYNLVV 433

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
               ++  + +A    N     G   ++  FN L+   CK +N+ KA EI D M    I 
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY+ LL G  K   L    + F+ M++ GC P+I+TY I+++  CK  +V EA+ +
Sbjct: 494 PDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMEL 553

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNALIGAFC 316
            K M +    P       L+        ++ A + F+ +EK    +   A++N +I AFC
Sbjct: 554 FKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFC 613

Query: 317 K------ANKFKN------------VYRVLKDMN-----------------SKGVAPNSR 341
           +      A K  +             YRV+ D                   SKG+ P+  
Sbjct: 614 EKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFT 673

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIK 368
           TC  +LN L       EA  +   M++
Sbjct: 674 TCGKVLNCLCVTHRLSEAVVIINLMVQ 700



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 210 WGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CR 267
           +  DP    A ++F ++  + G    + TY  M++ L   G+ +    ++  M   V  +
Sbjct: 16  YQNDP--LNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSK 73

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
               +Y  ++  YG + ++++AV+ F  M+       V  YNA++    +   F   ++V
Sbjct: 74  MLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKV 133

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
              M   G+ P+  T  I +      G    A R+   M  + CE +A +Y  +I  F +
Sbjct: 134 YMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYK 193

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
                +A+ ++  M  +   P + TF+ LI+ LC KG V +S  L   ++++G+ P+  T
Sbjct: 194 ENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 447 FGKLRKLLIKEGRED 461
           F    + L ++G  D
Sbjct: 254 FNIFIQGLCRKGAID 268



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 13/221 (5%)

Query: 49  VLDTALDQSGIRVSPEIVE-----DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           +LDT L      ++P+++      + L K R    +   F    EK      ++  Y+ +
Sbjct: 483 ILDTMLSHG---ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEK--GCTPNIITYNIL 537

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK-YG 161
           IES  K R+     +L   M+T+ +  ++ T C ++       ++++A   F  ++K Y 
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYK 597

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAR 220
            + + A FN +++A C+  NV  A+++F  M      PD+ TY ++++ + K  N+  A 
Sbjct: 598 FSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAH 657

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
               E +  G  P   T G +++ LC   R+ EA+ I+  M
Sbjct: 658 TFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 185/367 (50%), Gaps = 6/367 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV-EEAVYTF 154
           VRAY +++ +L++  +Y+    L   +R + ++  + T+ +++  Y R+ +     V   
Sbjct: 89  VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 148

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M+  GV  +    + +++A  +   + +A   F+ +K R  +P   TY+ LL+ +GK 
Sbjct: 149 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 208

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  + +EM D+GC PD VTY  +     +AG  +EA   + +M S    P +F Y
Sbjct: 209 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 268

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  Y    R+++A+  F  M+KNG + +V  YN + G   K ++F  +  +L++M+ 
Sbjct: 269 NTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSR 328

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELE 391
            G  PN  T N +L     RG  D   RV   M K C  E   DTY  +I  + + G   
Sbjct: 329 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGM-KSCGVELSRDTYNTLISAYGRCGSRT 387

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AFK++  M    F P + T++ L+N L  +G  S +  ++  M++ G +P+ +++  L 
Sbjct: 388 YAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 447

Query: 452 KLLIKEG 458
           +   K G
Sbjct: 448 QCYAKGG 454



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 2/265 (0%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGI 257
           D + Y+ +L    +     RA ++F E+   G  P IVTY +++DV  + GR     + +
Sbjct: 88  DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVAL 147

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M +    P  F  S ++   G +  ++ AV  F +++  G +  V  YNAL+  F K
Sbjct: 148 LEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGK 207

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
           A  +    RVLK+M   G  P++ T N +       G  +EA +    M  K    +  T
Sbjct: 208 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 267

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  ++  +   G +++A  ++  MK   ++P+++T++++   L  K   +    +LE+M 
Sbjct: 268 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 327

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
             G  P+  T+  +  +  K G ED
Sbjct: 328 RSGCTPNRVTWNTMLAVCGKRGMED 352



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 165/389 (42%), Gaps = 38/389 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +  + A+   ++     ++ M +K +L N  T+  +M  YA V +V+EA+  F+ M+
Sbjct: 233 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 292

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------CMKDRFIPDS------------ 200
           K G   N+  +N +   L K        E+ +      C  +R   ++            
Sbjct: 293 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 352

Query: 201 ------------------KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                              TY+ L+  +G+  +   A +++ EM+ +G  P + TY  ++
Sbjct: 353 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 412

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           +VL + G    A  IV  M     +P    YS+L+  Y              E+    I 
Sbjct: 413 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 472

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
               +   L+ A  K  + + V +  +++ ++G  P+    N +L      G   +A  +
Sbjct: 473 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 532

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  + +     D  TY  ++ M+ +  E  +A K+ K +K  +  P + +++ +ING C 
Sbjct: 533 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 592

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +G++ ++  +L +MI  G+ P   T+  L
Sbjct: 593 QGLIKEAQRILSEMIADGMAPCVVTYHTL 621



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 2/294 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+ +T+  ++  Y R      A   ++ M   G T  L  +N LL+ L +  +   AQ I
Sbjct: 368 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 427

Query: 189 FDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              M K+ F P+ ++YS+LL+ + K  N      I +E+      P  V    +V    K
Sbjct: 428 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 487

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             R++      + + +   +P   I++ ++  Y        A + F  ++++G+  D+  
Sbjct: 488 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 547

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN+L+  + K+N+     ++LK + S  V P+  + N ++NG   +G   EA R+   MI
Sbjct: 548 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 607

Query: 368 KLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
               A    TY  ++  +       +A +V  YM      P   T+  +++  C
Sbjct: 608 ADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYC 661



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 127/301 (42%), Gaps = 3/301 (0%)

Query: 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCN 232
           +AL  S +   A  +     D    D+    +++   G++       ++  EM +  G  
Sbjct: 27  TALELSGHWEWALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSR 86

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
            D+  Y  ++  L +AGR + AL +   +      PT   Y+V++  YG   R    +  
Sbjct: 87  LDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVA 146

Query: 293 FL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            L EM   G+  D    + +I A  +           +D+ ++G  P   T N +L    
Sbjct: 147 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 206

Query: 352 GRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G   EA RV + M    C+ DA TY  +   + + G  E+A K    M  K  +P+  
Sbjct: 207 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 266

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T++ ++    + G V ++  L + M + G  P+  T+  +  +L K+ R   +  + E+M
Sbjct: 267 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 326

Query: 471 N 471
           +
Sbjct: 327 S 327



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/311 (18%), Positives = 140/311 (45%), Gaps = 15/311 (4%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G+ +S +    ++  +   G+  + F  + E     +   +  Y++++  L++   +   
Sbjct: 365 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 424

Query: 117 WDLVNAM-RTKRMLNVETFCIIMRKYAR------VQKVEEAVYTFNVMQKYGVTQNLAAF 169
             +V+ M +     N +++ ++++ YA+      ++ +E+ VY   +   + + + L   
Sbjct: 425 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIA 484

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N       K + +   ++ F  +K + + PD   ++ +L  + K+    +A E+F  +  
Sbjct: 485 N------FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQ 538

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +G +PD++TY  ++D+  K+    EA  I+K + S+  +P    Y+ +++ +  +  I++
Sbjct: 539 SGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKE 598

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     EM  +G+   V  Y+ L+G +     F     V+  M    + P   T   +++
Sbjct: 599 AQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVD 658

Query: 349 GLIGRGETDEA 359
                   DEA
Sbjct: 659 SYCKAKRYDEA 669



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 4/203 (1%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           + T  I   K  R++ VE+A   F  ++  G   +L  FN +L+   K+    KA E+FD
Sbjct: 478 LRTLVIANFKCRRLEGVEKA---FQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFD 534

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            +K   + PD  TY+ L++ + K      A +I +++  +   PD+V+Y  +++  CK G
Sbjct: 535 SIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG 594

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            + EA  I+  M +    P    Y  LV  Y       +A +    M  + +      Y 
Sbjct: 595 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYR 654

Query: 310 ALIGAFCKANKFKNVYRVLKDMN 332
            ++ ++CKA ++      L +++
Sbjct: 655 RVVDSYCKAKRYDEAREFLSEIS 677



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K Q Y+  +  ++SM+   AK   Y    ++ ++++   +  ++ T+  +M  YA+  + 
Sbjct: 502 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNES 561

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
            EA      ++   V  ++ ++N +++  CK   +++AQ I   M  D   P   TY  L
Sbjct: 562 WEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 621

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           + G+        ARE+   M+     P  +TY  +VD  CKA R DEA   +  +  T
Sbjct: 622 VGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDT 679


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 199/431 (46%), Gaps = 49/431 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIM 138
           A   F    +Q+ + H+   Y ++I+ LA+ +++Q +  L+  M  +     E+ F  +M
Sbjct: 66  ALEIFNLVVEQKGFNHNHATYSTIIDKLARAKKFQAVDALLRQMMYETCKFHESLFLNLM 125

Query: 139 RKYARVQKVEEAVYTFNVMQK-------------------------------------YG 161
           + +A+  + E  V  FN +Q                                      + 
Sbjct: 126 KYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHM 185

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGKDPNLPRA 219
           +  N   FN  +   CKS ++  A  +   MK   I  P+  TYS L++G  +   L  A
Sbjct: 186 LKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEA 245

Query: 220 REIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
            E+F EMV      PD +TY ++++     G+VD A  I++ M S  C P  F YS L+ 
Sbjct: 246 IELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMS 305

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +  E R+E+A+D F EM+  G+  D   Y  LI  FC+  +      +L++M       
Sbjct: 306 GFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKA 365

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAF 394
           +  T N++L G  G G T+EA  +  R+    I L +A   +Y +++   CQ G+L+KA 
Sbjct: 366 DIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKA---SYRIVLNSLCQKGDLDKAL 422

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++      + F+P   T + L+ GLC  G+  D+ V L  + E G +P  +++  L + +
Sbjct: 423 ELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLVEFV 482

Query: 455 IKEGREDVLKF 465
            +E R+ +L F
Sbjct: 483 CRE-RKLLLAF 492



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 162/350 (46%), Gaps = 10/350 (2%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN-VMQKYGVTQNLAAFNGLLSALC 177
           L+   R  + ++ ET  + + K+ R    + A+  FN V+++ G   N A ++ ++  L 
Sbjct: 38  LLEPRRKPKFISHET-AVNLIKHER--DPQHALEIFNLVVEQKGFNHNHATYSTIIDKLA 94

Query: 178 KSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDI 235
           ++K  +    +    M +        +  L++ + K     R  E+F ++       P +
Sbjct: 95  RAKKFQAVDALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSL 154

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
                 +++L ++ +VD   G +  ++   + +P + I+++ +  +     +E A     
Sbjct: 155 KAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVK 214

Query: 295 EMEKNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIG 352
           EM+K+ I   ++  Y+ L+   C++ + K    + ++M SK  + P++ T N+++NG   
Sbjct: 215 EMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSC 274

Query: 353 RGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+ D A ++   M    C  +   Y+ ++  FC+ G LE+A   ++ MK+         
Sbjct: 275 WGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVG 334

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +++LIN  C  G + ++  LLE+M E   +    T   L +    EGR +
Sbjct: 335 YTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTE 384



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 139/319 (43%), Gaps = 45/319 (14%)

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNPDIVTYGIMVDVLCKAGRV 251
           K +FI  S   ++ L    +DP    A EIF  +V+  G N +  TY  ++D L +A + 
Sbjct: 44  KPKFI--SHETAVNLIKHERDPQ--HALEIFNLVVEQKGFNHNHATYSTIIDKLARAKKF 99

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF------------------ 293
                +++ M    C+    ++  L+  +   +  E  V+ F                  
Sbjct: 100 QAVDALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAIST 159

Query: 294 ------------------LEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
                             L++ K+ +L  +  ++N  I   CK+   ++ + V+K+M   
Sbjct: 160 CLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKS 219

Query: 335 GVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELE 391
            ++ PN  T + +++GL   G   EA  +F  M+   +   DA TY ++I  F   G+++
Sbjct: 220 SISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVD 279

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A K+ ++MK     P++  +S L++G C +G + ++    E+M   G++     +  L 
Sbjct: 280 RAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILI 339

Query: 452 KLLIKEGREDVLKFLQEKM 470
               + GR D    L E+M
Sbjct: 340 NYFCRFGRIDEAMALLEEM 358



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 1/167 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  + R  +++EA+     M++     ++   N LL   C      +A  + + + 
Sbjct: 335 YTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLS 394

Query: 194 DRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
              I  +K +Y I+L    +  +L +A E+    +  G  P   T   ++  LCKAG  D
Sbjct: 395 SEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMAD 454

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           +A+  +  +     +P    +++LV     E ++  A +   E+  N
Sbjct: 455 DAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTAN 501


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 185/367 (50%), Gaps = 6/367 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV-EEAVYTF 154
           VRAY +++ +L++  +Y+    L   +R + ++  + T+ +++  Y R+ +     V   
Sbjct: 180 VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 239

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M+  GV  +    + +++A  +   + +A   F+ +K R  +P   TY+ LL+ +GK 
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  + +EM D+GC PD VTY  +     +AG  +EA   + +M S    P +F Y
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  Y    R+++A+  F  M+KNG + +V  YN + G   K ++F  +  +L++M+ 
Sbjct: 360 NTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSR 419

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELE 391
            G  PN  T N +L     RG  D   RV   M K C  E   DTY  +I  + + G   
Sbjct: 420 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGM-KSCGVELSRDTYNTLISAYGRCGSRT 478

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AFK++  M    F P + T++ L+N L  +G  S +  ++  M++ G +P+ +++  L 
Sbjct: 479 YAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538

Query: 452 KLLIKEG 458
           +   K G
Sbjct: 539 QCYAKGG 545



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 2/265 (0%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGI 257
           D + Y+ +L    +     RA ++F E+   G  P IVTY +++DV  + GR     + +
Sbjct: 179 DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVAL 238

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M +    P  F  S ++   G +  ++ AV  F +++  G +  V  YNAL+  F K
Sbjct: 239 LEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGK 298

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
           A  +    RVLK+M   G  P++ T N +       G  +EA +    M  K    +  T
Sbjct: 299 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 358

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  ++  +   G +++A  ++  MK   ++P+++T++++   L  K   +    +LE+M 
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
             G  P+  T+  +  +  K G ED
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMED 443



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 165/389 (42%), Gaps = 38/389 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +  + A+   ++     ++ M +K +L N  T+  +M  YA V +V+EA+  F+ M+
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------CMKDRFIPDS------------ 200
           K G   N+  +N +   L K        E+ +      C  +R   ++            
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 201 ------------------KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                              TY+ L+  +G+  +   A +++ EM+ +G  P + TY  ++
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           +VL + G    A  IV  M     +P    YS+L+  Y              E+    I 
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
               +   L+ A  K  + + V +  +++ ++G  P+    N +L      G   +A  +
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  + +     D  TY  ++ M+ +  E  +A K+ K +K  +  P + +++ +ING C 
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 683

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +G++ ++  +L +MI  G+ P   T+  L
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTL 712



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 2/294 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+ +T+  ++  Y R      A   ++ M   G T  L  +N LL+ L +  +   AQ I
Sbjct: 459 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 518

Query: 189 FDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              M K+ F P+ ++YS+LL+ + K  N      I +E+      P  V    +V    K
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             R++      + + +   +P   I++ ++  Y        A + F  ++++G+  D+  
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN+L+  + K+N+     ++LK + S  V P+  + N ++NG   +G   EA R+   MI
Sbjct: 639 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 698

Query: 368 KLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
               A    TY  ++  +       +A +V  YM      P   T+  +++  C
Sbjct: 699 ADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYC 752



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 128/303 (42%), Gaps = 3/303 (0%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTG 230
           LL AL  S +   A  +     D    D+    +++   G++       ++  EM +  G
Sbjct: 116 LLKALELSGHWEWALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPG 175

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
              D+  Y  ++  L +AGR + AL +   +      PT   Y+V++  YG   R    +
Sbjct: 176 SRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRI 235

Query: 291 DTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              L EM   G+  D    + +I A  +           +D+ ++G  P   T N +L  
Sbjct: 236 VALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQV 295

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               G   EA RV + M    C+ DA TY  +   + + G  E+A K    M  K  +P+
Sbjct: 296 FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPN 355

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             T++ ++    + G V ++  L + M + G  P+  T+  +  +L K+ R   +  + E
Sbjct: 356 TFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 415

Query: 469 KMN 471
           +M+
Sbjct: 416 EMS 418



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/311 (18%), Positives = 140/311 (45%), Gaps = 15/311 (4%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G+ +S +    ++  +   G+  + F  + E     +   +  Y++++  L++   +   
Sbjct: 456 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 117 WDLVNAM-RTKRMLNVETFCIIMRKYAR------VQKVEEAVYTFNVMQKYGVTQNLAAF 169
             +V+ M +     N +++ ++++ YA+      ++ +E+ VY   +   + + + L   
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIA 575

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N       K + +   ++ F  +K + + PD   ++ +L  + K+    +A E+F  +  
Sbjct: 576 N------FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQ 629

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +G +PD++TY  ++D+  K+    EA  I+K + S+  +P    Y+ +++ +  +  I++
Sbjct: 630 SGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKE 689

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     EM  +G+   V  Y+ L+G +     F     V+  M    + P   T   +++
Sbjct: 690 AQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVD 749

Query: 349 GLIGRGETDEA 359
                   DEA
Sbjct: 750 SYCKAKRYDEA 760



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 4/203 (1%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           + T  I   K  R++ VE+A   F  ++  G   +L  FN +L+   K+    KA E+FD
Sbjct: 569 LRTLVIANFKCRRLEGVEKA---FQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFD 625

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            +K   + PD  TY+ L++ + K      A +I +++  +   PD+V+Y  +++  CK G
Sbjct: 626 SIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG 685

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            + EA  I+  M +    P    Y  LV  Y       +A +    M  + +      Y 
Sbjct: 686 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYR 745

Query: 310 ALIGAFCKANKFKNVYRVLKDMN 332
            ++ ++CKA ++      L +++
Sbjct: 746 RVVDSYCKAKRYDEAREFLSEIS 768



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K Q Y+  +  ++SM+   AK   Y    ++ ++++   +  ++ T+  +M  YA+  + 
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNES 652

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
            EA      ++   V  ++ ++N +++  CK   +++AQ I   M  D   P   TY  L
Sbjct: 653 WEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 712

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           + G+        ARE+   M+     P  +TY  +VD  CKA R DEA   +  +  T
Sbjct: 713 VGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDT 770


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 173/348 (49%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I+ L K +     +DL + M  + +  +  T+  ++  +  + ++  A    
Sbjct: 149 NVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLL 208

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + M    +   +  +N L++ALCK  NV++A+ +   M K+   P   TYS L++G+   
Sbjct: 209 DEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLV 268

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A++IF  MV  G NP++ +Y IM++ LCK  RVDEA+ +++ M      P +  Y
Sbjct: 269 GEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 328

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+       RI  A++   EM   G  ADV  Y +L+ A CK         +   M  
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGELEK 392
           +G+ P   T   +++GL   G    A  +F+  ++K C  D  TYT+MI   C+ G  ++
Sbjct: 389 RGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDE 448

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           A  +   M+    IP+  TF ++I  L +K     +  LL +MI KG+
Sbjct: 449 ALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 212/452 (46%), Gaps = 8/452 (1%)

Query: 25  SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFF 84
           + P  E      S++K+      + L   ++  GIR +   +  ++  F + G +AF F 
Sbjct: 7   TPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFS 66

Query: 85  KWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
              +  +  Y+      +++++ L    ++++     D V A   +  ++  ++  ++  
Sbjct: 67  VLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQ--MDHVSYGTLLNG 124

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
             ++ +   AV    +++      N+  +N ++  LCK K V +A +++  M  R I PD
Sbjct: 125 LCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPD 184

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           + TY+ L+ G+     L  A  +  EM+    NP +  Y I+++ LCK G V EA  ++ 
Sbjct: 185 AITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLA 244

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     +P    YS L+  Y +   +++A   F  M + G+  +V  YN +I   CK  
Sbjct: 245 VMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCK 304

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYT 378
           +      +L++M  K + P++ T N +++GL   G    A  +   M    + AD  TYT
Sbjct: 305 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 364

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++   C+   L+KA  ++  MK +   P+M+T++ LI+GLC  G + ++  L + ++ K
Sbjct: 365 SLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK 424

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G      T+  +   L KEG  D    ++ KM
Sbjct: 425 GCCIDVWTYTVMISGLCKEGMFDEALAIKSKM 456



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 5/349 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T   +M+      +V+++++  + +   G   +  ++  LL+ LCK    R A ++   +
Sbjct: 82  TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMI 141

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +DR   P+   Y+ +++G  KD  +  A +++ EM   G  PD +TY  ++   C  G++
Sbjct: 142 EDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQL 201

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  ++  M      P  +IY++L++    E  +++A +    M K GI   V  Y+ L
Sbjct: 202 MGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           +  +C   + +N  ++   M   GV PN  + NI++NGL      DEA  + R M+ K  
Sbjct: 262 MDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNM 321

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY  +I   C+ G +  A  +   M  +     + T++ L++ LC    +  +  
Sbjct: 322 VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATA 381

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLC 479
           L   M E+GI+P+  T+  L   L K GR   LK  QE    L+ +  C
Sbjct: 382 LFMKMKERGIQPTMYTYTALIDGLCKGGR---LKNAQELFQHLLVKGCC 427



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q     +V +Y+ MI  L K ++     +L+  M  K M+ +  T+  ++    +  ++ 
Sbjct: 283 QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT 342

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   N M   G   ++  +  LL ALCK++N+ KA  +F  MK+R I P   TY+ L+
Sbjct: 343 SALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALI 402

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  K   L  A+E+F+ ++  GC  D+ TY +M+  LCK G  DEAL I   M+   C 
Sbjct: 403 DGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCI 462

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL------ADVAMYN 309
           P +  + +++ +   ++  + A     EM   G+L      ADV + N
Sbjct: 463 PNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLDFKVADVFVQN 510



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 1/257 (0%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P    ++ +L    K      A  + ++M   G   + VT  I+++  C  G++  +
Sbjct: 5   RHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFS 64

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++  +     +P +   + L+    ++  ++ ++    ++   G   D   Y  L+  
Sbjct: 65  FSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNG 124

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEAD 373
            CK  + +   ++L+ +  +   PN    N I++GL      +EAY ++  M  +    D
Sbjct: 125 LCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPD 184

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
           A TYT +I  FC  G+L  AF +   M LK   P ++ +++LIN LC +G V ++  LL 
Sbjct: 185 AITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLA 244

Query: 434 DMIEKGIRPSGETFGKL 450
            M ++GI+P   T+  L
Sbjct: 245 VMTKEGIKPGVVTYSTL 261


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 185/375 (49%), Gaps = 13/375 (3%)

Query: 103 MIESLAKIRQYQIMWDLVNAMR-------TKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           ++   A IR++  +    NA R       +  +++  ++ +++  Y +  ++EEA+    
Sbjct: 104 VVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEAL---R 160

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDP 214
           V+    V  N A ++ +L +LC    +++A ++ D  ++ +  PD  T ++L++   K+ 
Sbjct: 161 VLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKES 220

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A ++F EM   GC PD+VTY +++   CK GR+DEA+  +K + S  C+     ++
Sbjct: 221 GVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHN 280

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++ +     R  DA+     M + G    V  +N LI   C+         VL+ M   
Sbjct: 281 MILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKH 340

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G  PNSR+ N ++ G   R   D A      M+ + C  D  TY +++   C+ G+++ A
Sbjct: 341 GHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDA 400

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   +  K   PS+ +++ +I+GL   G    +  LLE+M  KG++P   T   +   
Sbjct: 401 VVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGG 460

Query: 454 LIKEGR-EDVLKFLQ 467
           L +EG+  + +KF  
Sbjct: 461 LSREGKVHEAIKFFH 475



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 169/335 (50%), Gaps = 3/335 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R++ ++ + + A     ++++ G   +  ++N L++A CKS  + +A  + D      
Sbjct: 110 LIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLD--HTSV 167

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P++ TY  +L        L +A ++    + + C PD+VT  +++D  CK   V +A+ 
Sbjct: 168 APNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMK 227

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +   M    C+P    Y+VL+  +  E R+++A+    ++   G  +DV  +N ++ + C
Sbjct: 228 LFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLC 287

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DAD 375
              ++ +  ++L  M  KG  P+  T NI++N L  +G   +A  V   M K     ++ 
Sbjct: 288 SGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSR 347

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           ++  +I+ FC    +++A +  + M  +   P + T+++L+  LC  G V D+ V+L  +
Sbjct: 348 SFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQL 407

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG  PS  ++  +   L+K G+ ++   L E+M
Sbjct: 408 SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 442



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 164/352 (46%), Gaps = 12/352 (3%)

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
           Q M  L   +++K   +V T  +++    +   V +A+  FN M+  G   ++  +N L+
Sbjct: 189 QAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLI 248

Query: 174 SALCKSKNVRKA------QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
              CK   + +A         + C  D       +++++L           A ++   M+
Sbjct: 249 KGFCKEGRLDEAIIFLKKLPSYGCQSDVI-----SHNMILRSLCSGGRWMDAMKLLATML 303

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC P +VT+ I+++ LC+ G + +AL +++ M      P S  ++ L+  +     I+
Sbjct: 304 RKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGID 363

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
            A++    M   G   D+  YN L+ A CK  K  +   +L  ++SKG +P+  + N ++
Sbjct: 364 RAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVI 423

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +GL+  G+ + A  +   M  K  + D  T T ++    + G++ +A K + Y+K     
Sbjct: 424 DGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIK 483

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           P+   ++ ++ GLC     S +   L DM+  G +P+  ++  L K +  EG
Sbjct: 484 PNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEG 535



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 4/255 (1%)

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           IPD    + L+  + K      A  I   + ++G   D  +Y ++++  CK+G ++EAL 
Sbjct: 101 IPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEAL- 159

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
             + +D T   P +  Y  ++ +     +++ A+       ++    DV     LI A C
Sbjct: 160 --RVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATC 217

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           K +      ++  +M  KG  P+  T N+++ G    G  DEA    +++    C++D  
Sbjct: 218 KESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVI 277

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           ++ M+++  C GG    A K+   M  K   PS+ TF++LIN LC KG++  +  +LE M
Sbjct: 278 SHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMM 337

Query: 436 IEKGIRPSGETFGKL 450
            + G  P+  +F  L
Sbjct: 338 PKHGHTPNSRSFNPL 352



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KD 194
           +I+R      +  +A+     M + G   ++  FN L++ LC+   + KA  + + M K 
Sbjct: 281 MILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKH 340

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
              P+S++++ L++G+     + RA E    MV  GC PDIVTY I++  LCK G+VD+A
Sbjct: 341 GHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDA 400

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + I+  + S  C P+   Y+ ++       + E AV+   EM   G+  D+    +++G 
Sbjct: 401 VVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGG 460

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
             +  K     +    +   G+ PN+   N I+ GL    +T  A      M+   C+  
Sbjct: 461 LSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPT 520

Query: 374 ADTYTMMIKMFCQGGELEKAFKV 396
             +YT +IK     G  E+A K+
Sbjct: 521 EASYTTLIKGITYEGLAEEASKL 543



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L + G ++E    ++ M +    P     + L+  +    R ++A      +E++G + D
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
              YN LI A+CK+ + +   RVL   +   VAPN+ T + +L  L  RG+  +A +V  
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVL---DHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           R ++  C  D  T T++I   C+   + +A K++  M+ K   P + T++VLI G C +G
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
            + ++ + L+ +   G +    +   + + L   GR  D +K L
Sbjct: 256 RLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLL 299



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 36/266 (13%)

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           R    M  L   +R     +V TF I++    +   + +A+    +M K+G T N  +FN
Sbjct: 291 RWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFN 350

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+   C  K + +A E  + M  R   PD  TY+ILL    KD  +  A  I  ++   
Sbjct: 351 PLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSK 410

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-------DSTVC---------------- 266
           GC+P +++Y  ++D L K G+ + A+ +++ M       D   C                
Sbjct: 411 GCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEA 470

Query: 267 ------------RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
                       +P +FIY+ ++       +   A+D  ++M  NG     A Y  LI  
Sbjct: 471 IKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKG 530

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNS 340
                  +   ++  ++ S+G+   S
Sbjct: 531 ITYEGLAEEASKLSNELYSRGLVKKS 556


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 191/395 (48%), Gaps = 20/395 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y+  I  L K ++     ++ N +  K +  +V T+C ++    +V++ E      
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           N M ++G   + AA + L+  L K  N+  A ++ + +K   + P    Y+ L+    KD
Sbjct: 309 NEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +F  M   G  P+ VTY I++D  CK G++D AL  +  M     + T + Y
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+  +    ++  A   F EM  NG+  +V +Y +LI  +CK  +  N +R+  +M  
Sbjct: 429 SSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG++PN+ T   +++GL       EA ++F  M++     +  TY ++I+  C+ G   +
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM---------IEKGIRPS 443
           AF++   M  K  +P  +T+  LI+GLC  G VS++   + D+         IE G  P+
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIE-GCLPN 607

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
             T+  L   L K G       L +K  LL +E L
Sbjct: 608 VVTYTALINGLCKIG-------LMDKAELLCREML 635



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 172/370 (46%), Gaps = 20/370 (5%)

Query: 96  SVRAYHSMIES---LAKIRQYQIMWD--LVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           +V  Y S+I     L K+R  + ++D  + N ++     NV  +  ++  Y +  ++  A
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKP----NVVIYTSLISGYCKEGELHNA 479

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEG 209
              ++ M   G++ N   F  L+S LC +  + +A ++F  M +   IP+  TY++L+EG
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG 539

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV---- 265
             K+ N  RA E+  EMV+ G  PD  TY  ++  LC  GRV EA   +  +        
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN 599

Query: 266 ----CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
               C P    Y+ L++       ++ A     EM  +  L +   Y   +         
Sbjct: 600 EIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNI 659

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           +   + L D+  +G   N+ T NI++ G    G   EA  V   MI      D  +Y+ +
Sbjct: 660 EKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTI 718

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I  +C+ G+L++A K+W+ M  +   P    ++ LI G C  G ++ +  L +DM+ +G+
Sbjct: 719 IYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGV 778

Query: 441 RPSGETFGKL 450
           +P+  T+  L
Sbjct: 779 KPNRATYNSL 788



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 160/347 (46%), Gaps = 18/347 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y S+I    K  +    + L + M  K +  N  TF  ++       ++ EA   F
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M ++ V  N   +N L+   CK  N  +A E+ D M ++  +PD+ TY  L+ G    
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 214 PNLPRAREIFREMVDT--------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
             +  ARE   ++           GC P++VTY  +++ LCK G +D+A  + + M ++ 
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN 638

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAV---DTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
             P    Y+  +     E  IE A+   D  LE    G LA+   YN LI  FCK  + +
Sbjct: 639 SLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE----GFLANTVTYNILIRGFCKLGRIQ 694

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
               VL +M   G++P+  + + I+     RG+  EA +++  M+ +    D   Y  +I
Sbjct: 695 EAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLI 754

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
              C  GEL KAF++   M  +   P+  T++ LI+G C    VS +
Sbjct: 755 YGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSST 801



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 184/421 (43%), Gaps = 19/421 (4%)

Query: 53  ALDQSGIR--VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           AL+ S I   + P  VE VL +  +   LA  FF +    +N++HS  ++  +I +L + 
Sbjct: 47  ALNNSFISQTLKPHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQS 106

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
             Y     L+  +  + +     F   +  Y +        +   ++Q Y   QN    +
Sbjct: 107 NLYWPASSLLQTLLLRGLNPEGLFESFLDSYRKCNFSTTLGFDL-LIQTY--VQNRRELD 163

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           GL+            + + DC     +P  +T S +L G  +      A  +F E+V +G
Sbjct: 164 GLVVV----------RLMMDC---GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+  Y  +V  LC+      A  ++  M+S+ C  +   Y+V +       R+ +AV
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           +    +   G+ ADV  Y  L+   CK  +F+    ++ +M   G  P+    + +++GL
Sbjct: 271 EIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGL 330

Query: 351 IGRGETDEAYRVFRRMIKLCEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             +G    A+ +  ++ K   A +   Y  +I   C+ G+L++A  ++  M  K   P+ 
Sbjct: 331 RKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPND 390

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            T+S+LI+  C +G +  +   L  M E GI+ +   +  L     K G+    K L ++
Sbjct: 391 VTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDE 450

Query: 470 M 470
           M
Sbjct: 451 M 451



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 3/200 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I  L KI        L   M     L N  T+   +        +E+A+   
Sbjct: 607 NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH 666

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           +V+ + G   N   +N L+   CK   +++A E+   M D  I PD  +YS ++  + + 
Sbjct: 667 DVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 725

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A +++  M++ G NPD V Y  ++   C  G + +A  +   M     +P    Y
Sbjct: 726 GDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 785

Query: 274 SVLVHTYGVENRIEDAVDTF 293
           + L+H   + + +    D F
Sbjct: 786 NSLIHGTCLMSSVSSTADYF 805


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 208/451 (46%), Gaps = 10/451 (2%)

Query: 5   YHSRNKMISGCISFLR--RYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVS 62
           +H ++   S   SF R    N + P  E      S+ KI      + L   ++ +GI   
Sbjct: 31  HHHQDDEHSLVSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASD 90

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQIMWD 118
                 ++  F   G   F F  +A   ++ YE +     ++I+ L    +I Q     D
Sbjct: 91  LVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHD 150

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
            V A+     LN   +  ++    +V +   A+     +    V  N+  +N ++ ++CK
Sbjct: 151 KVVALGFH--LNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCK 208

Query: 179 SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
            K V +A +++  M  + I PD  TYS L+ G+     L  A  +F +M+    NPD+ T
Sbjct: 209 VKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYT 268

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           + I+VD  CK GRV EA  ++  M     +P    Y  L+  Y +  ++  A   F  M 
Sbjct: 269 FSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMA 328

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G+ A+V  YN +I  FCK  K      + K+M+ K + P+  T N +++GL   G+  
Sbjct: 329 QGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKIS 388

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A ++   M  +    D  TY  ++   C+  +++KA  +   MK +   P M+T+++LI
Sbjct: 389 YALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILI 448

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +GLC  G + D+  + ED++ KG   +  T+
Sbjct: 449 DGLCKGGRLKDAQNIFEDLLVKGYNITVYTY 479



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 193/374 (51%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I  L K+ Q      L+  +  K +  NV  +  I+    +V+ V EA   ++ M 
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 223

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G++ ++  ++ L+S  C    +  A  +F+ M    I PD  T+SIL++G+ K+  + 
Sbjct: 224 SKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVK 283

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+ +   M+  G  PD+VTY  ++D  C   +V++A  I  +M           Y++++
Sbjct: 284 EAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMI 343

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           + +    ++++A++ F EM    I+ DV  YN+LI   CK+ K     +++ +M+ +GV 
Sbjct: 344 NGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVP 403

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
            +  T N IL+ L    + D+A  +  +M  +  + D  TYT++I   C+GG L+ A  +
Sbjct: 404 HDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNI 463

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ + +K +  +++T++V+I G CD  +   +  LL  M + G  P+ +T+  +   L +
Sbjct: 464 FEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFE 523

Query: 457 EGREDVLKFLQEKM 470
           +   D+ + L  +M
Sbjct: 524 KDENDMAEKLLREM 537



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 173/348 (49%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I+S+ K++     +DL + M +K +  +V T+  ++  +  + K+ +A+  F
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           N M    +  ++  F+ L+   CK   V++A+ +   M  + I PD  TY  L++G+   
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLV 314

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + +A+ IF  M   G   ++ +Y IM++  CK  +VDEA+ + K M      P    Y
Sbjct: 315 KQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTY 374

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+       +I  A+    EM   G+  D   YN+++ A CK ++      +L  M  
Sbjct: 375 NSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKD 434

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           +G+ P+  T  I+++GL   G   +A  +F  + +K       TYT+MI+ FC     +K
Sbjct: 435 EGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDK 494

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           A  +   M+    IP+  T+ ++I  L +K     +  LL +MI +G+
Sbjct: 495 ALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 171/374 (45%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +  ++ SL KI  YQ    L   M    +  ++ TF I++  ++++     +   F  + 
Sbjct: 59  FGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANIL 118

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           K G   N      L+  LC    + +A    D  +   F  +   Y  L+ G  K     
Sbjct: 119 KKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTS 178

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++ R +      P++V Y  ++D +CK   V+EA  +   M S    P    YS L+
Sbjct: 179 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALI 238

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             + +  ++ DA+  F +M    I  DV  ++ L+  FCK  + K    VL  M  +G+ 
Sbjct: 239 SGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIK 298

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P+  T   +++G     + ++A  +F  M +    A+  +Y +MI  FC+  ++++A  +
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +K M  K  IP + T++ LI+GLC  G +S +  L+++M ++G+     T+  +   L K
Sbjct: 359 FKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCK 418

Query: 457 EGREDVLKFLQEKM 470
             + D    L  KM
Sbjct: 419 NHQVDKAIALLTKM 432



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 171/371 (46%), Gaps = 14/371 (3%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           Q + H     HS++ S  +I         +N   T  +     F  I+    ++   + A
Sbjct: 28  QLHHHHQDDEHSLVSSFNRI---------LNINPTPPIFE---FGKILGSLVKINCYQTA 75

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEG 209
           +     M+  G+  +L  FN L++   +  +   +  +F + +K  + P++ T + L++G
Sbjct: 76  ISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKG 135

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                 + +A     ++V  G + + V YG +++ LCK G+   AL +++ +D  + +P 
Sbjct: 136 LCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPN 195

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             +Y+ ++ +      + +A D + EM   GI  DV  Y+ALI  FC   K  +   +  
Sbjct: 196 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFN 255

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            M S+ + P+  T +I+++G    G   EA  V   M+K   + D  TY  ++  +C   
Sbjct: 256 KMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVK 315

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++ KA  ++  M       ++ +++++ING C    V ++  L ++M  K I P   T+ 
Sbjct: 316 QVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYN 375

Query: 449 KLRKLLIKEGR 459
            L   L K G+
Sbjct: 376 SLIDGLCKSGK 386



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 130/249 (52%), Gaps = 2/249 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +Q  +  V  Y S+++    ++Q      + N M    +  NV+++ I++  + +++KV+
Sbjct: 294 KQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVD 353

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILL 207
           EA+  F  M    +  ++  +N L+  LCKS  +  A ++ D M DR +P  K TY+ +L
Sbjct: 354 EAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSIL 413

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +   K+  + +A  +  +M D G  PD+ TY I++D LCK GR+ +A  I + +      
Sbjct: 414 DALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYN 473

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
            T + Y+V++  +   +  + A+    +ME NG + +   Y  +I +  + ++     ++
Sbjct: 474 ITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKL 533

Query: 328 LKDMNSKGV 336
           L++M ++G+
Sbjct: 534 LREMIARGL 542



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 2/209 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V++Y+ MI    KI++     +L   M  K ++ +V T+  ++    +  K+  A+   
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLV 394

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M   GV  +   +N +L ALCK+  V KA  +   MKD  I PD  TY+IL++G  K 
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKG 454

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A+ IF +++  G N  + TY +M+   C     D+AL ++  M+   C P +  Y
Sbjct: 455 GRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTY 514

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
            +++ +   ++  + A     EM   G+L
Sbjct: 515 EIIILSLFEKDENDMAEKLLREMIARGLL 543


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 185/367 (50%), Gaps = 6/367 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV-EEAVYTF 154
           VRAY +++ +L++  +Y+    L   +R + ++  + T+ +++  Y R+ +     V   
Sbjct: 180 VRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALL 239

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M+  GV  +    + +++A  +   + +A   F+ +K R  +P   TY+ LL+ +GK 
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  + +EM D+GC PD VTY  +     +AG  +EA   + +M S    P +F Y
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  Y    R+++A+  F  M+KNG + +V  YN + G   K ++F  +  +L++M+ 
Sbjct: 360 NTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSR 419

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELE 391
            G  PN  T N +L     RG  D   RV   M K C  E   DTY  +I  + + G   
Sbjct: 420 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGM-KSCGVELSRDTYNTLISAYGRCGSRT 478

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AFK++  M    F P + T++ L+N L  +G  S +  ++  M++ G +P+ +++  L 
Sbjct: 479 YAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLL 538

Query: 452 KLLIKEG 458
           +   K G
Sbjct: 539 QCYAKGG 545



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 2/265 (0%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV-DEALGI 257
           D + Y+ +L    +     RA ++F E+   G  P IVTY +++DV  + GR     + +
Sbjct: 179 DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVAL 238

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M +    P  F  S ++   G +  ++ AV  F +++  G +  V  YNAL+  F K
Sbjct: 239 LEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGK 298

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
           A  +    RVLK+M   G  P++ T N +       G  +EA +    M  K    +  T
Sbjct: 299 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 358

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  ++  +   G +++A  ++  MK   ++P+++T++++   L  K   +    +LE+M 
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
             G  P+  T+  +  +  K G ED
Sbjct: 419 RSGCTPNRVTWNTMLAVCGKRGMED 443



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 165/389 (42%), Gaps = 38/389 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +  + A+   ++     ++ M +K +L N  T+  +M  YA V +V+EA+  F+ M+
Sbjct: 324 YNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------CMKDRFIPDS------------ 200
           K G   N+  +N +   L K        E+ +      C  +R   ++            
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 201 ------------------KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                              TY+ L+  +G+  +   A +++ EM+ +G  P + TY  ++
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           +VL + G    A  IV  M     +P    YS+L+  Y              E+    I 
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
               +   L+ A  K  + + V +  +++ ++G  P+    N +L      G   +A  +
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  + +     D  TY  ++ M+ +  E  +A K+ K +K  +  P + +++ +ING C 
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 683

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +G++ ++  +L +MI  G+ P   T+  L
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTL 712



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 2/294 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+ +T+  ++  Y R      A   ++ M   G T  L  +N LL+ L +  +   AQ I
Sbjct: 459 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 518

Query: 189 FDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              M K+ F P+ ++YS+LL+ + K  N      I +E+      P  V    +V    K
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             R++      + + +   +P   I++ ++  Y        A + F  ++++G+  D+  
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN+L+  + K+N+     ++LK + S  V P+  + N ++NG   +G   EA R+   MI
Sbjct: 639 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 698

Query: 368 KLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
               A    TY  ++  +       +A +V  YM      P   T+  +++  C
Sbjct: 699 ADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYC 752



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 128/303 (42%), Gaps = 3/303 (0%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTG 230
           LL AL  S +   A  +     D    D+    +++   G++       ++  EM +  G
Sbjct: 116 LLKALELSGHWEWALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPG 175

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
              D+  Y  ++  L +AGR + AL +   +      PT   Y+V++  YG   R    +
Sbjct: 176 SRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRI 235

Query: 291 DTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              L EM   G+  D    + +I A  +           +D+ ++G  P   T N +L  
Sbjct: 236 VALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQV 295

Query: 350 LIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               G   EA RV + M    C+ DA TY  +   + + G  E+A K    M  K  +P+
Sbjct: 296 FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPN 355

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             T++ ++    + G V ++  L + M + G  P+  T+  +  +L K+ R   +  + E
Sbjct: 356 TFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 415

Query: 469 KMN 471
           +M+
Sbjct: 416 EMS 418



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/311 (18%), Positives = 140/311 (45%), Gaps = 15/311 (4%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G+ +S +    ++  +   G+  + F  + E     +   +  Y++++  L++   +   
Sbjct: 456 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 117 WDLVNAM-RTKRMLNVETFCIIMRKYAR------VQKVEEAVYTFNVMQKYGVTQNLAAF 169
             +V+ M +     N +++ ++++ YA+      ++ +E+ VY   +   + + + L   
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIA 575

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N       K + +   ++ F  +K + + PD   ++ +L  + K+    +A E+F  +  
Sbjct: 576 N------FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQ 629

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +G +PD++TY  ++D+  K+    EA  I+K + S+  +P    Y+ +++ +  +  I++
Sbjct: 630 SGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKE 689

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     EM  +G+   V  Y+ L+G +     F     V+  M    + P   T   +++
Sbjct: 690 AQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVD 749

Query: 349 GLIGRGETDEA 359
                   DEA
Sbjct: 750 SYCKAKRYDEA 760



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 4/203 (1%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           + T  I   K  R++ VE+A   F  ++  G   +L  FN +L+   K+    KA E+FD
Sbjct: 569 LRTLVIANFKCRRLEGVEKA---FQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFD 625

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            +K   + PD  TY+ L++ + K      A +I +++  +   PD+V+Y  +++  CK G
Sbjct: 626 SIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG 685

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            + EA  I+  M +    P    Y  LV  Y       +A +    M  + +      Y 
Sbjct: 686 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYR 745

Query: 310 ALIGAFCKANKFKNVYRVLKDMN 332
            ++ ++CKA ++      L +++
Sbjct: 746 RVVDSYCKAKRYDEAREFLSEIS 768



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K Q Y+  +  ++SM+   AK   Y    ++ ++++   +  ++ T+  +M  YA+  + 
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNES 652

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
            EA      ++   V  ++ ++N +++  CK   +++AQ I   M  D   P   TY  L
Sbjct: 653 WEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 712

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           + G+        ARE+   M+     P  +TY  +VD  CKA R DEA   +  +  T
Sbjct: 713 VGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDT 770


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 159/317 (50%), Gaps = 8/317 (2%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M + G   +   FN L+   C++  V  A+++FD M  R F  D  +Y+ L+EG  +   
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A E+F EM      PD+  Y  +V  LC A R +E L +++ M     RP++  Y+ 
Sbjct: 61  IDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +V     E + ++A +   EM + G+   V    A+I A+CK  +  +  RVL+ M  +G
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEKA 393
             PN  T N ++ G    G+  +A  +  +M + C    DA TY ++I+  C  G +E A
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKM-RACGVNPDAVTYNLLIRGQCIDGHIESA 235

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           F++ + M+    I   +T++ LIN LC  G    +C L + +  +GI+P+  TF  L   
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 295

Query: 454 LIKEGREDVLKFLQEKM 470
           L K G+ D+     EKM
Sbjct: 296 LCKSGKADIAWKFLEKM 312



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 5/345 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++  Y R  +V+ A   F+ M   G  Q++ ++  L+  LC++  + +A E+F  M
Sbjct: 12  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 71

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
                PD   Y+ L++G            + R M + G  P    Y  +VD  C+  +  
Sbjct: 72  DQ---PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAK 128

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  +++ M      P     + +++ Y  E R+ DA+     M+  G   +V  YNAL+
Sbjct: 129 EAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALV 188

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
             FC   K      +L  M + GV P++ T N+++ G    G  + A+R+ R M      
Sbjct: 189 QGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLI 248

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
           AD  TY  +I   C+ G  ++A  ++  ++ +   P+  TF+ LINGLC  G    +   
Sbjct: 249 ADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKF 308

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKMNLLVK 475
           LE M+  G  P   T+    + L K +G ++ L F+ E +   VK
Sbjct: 309 LEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 353



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 178/390 (45%), Gaps = 17/390 (4%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +   V +Y ++IE L +  +     +L   M    M     +  +++     ++ EE 
Sbjct: 39  RGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDM---HMYAALVKGLCNAERGEEG 95

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +     M++ G   +  A+  ++   C+ +  ++A+E+   M ++   P   T + ++  
Sbjct: 96  LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 155

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K+  +  A  +   M   GC P++ TY  +V   C  G+V +A+ ++  M +    P 
Sbjct: 156 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPD 215

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           +  Y++L+    ++  IE A      ME +G++AD   YNALI A CK  +      +  
Sbjct: 216 AVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFD 275

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            + ++G+ PN+ T N ++NGL   G+ D A++   +M+   C  D  TY+  I+  C+  
Sbjct: 276 SLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMK 335

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLEDMIEKGIRPSGE 445
             ++       M  K   PS   ++++I+ L  +   G+V+ +     +M+  G  P   
Sbjct: 336 GSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART---WGEMVSSGCNPDVV 392

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           T+    +    EGR      L E  N+L++
Sbjct: 393 TYTTSMRAYCIEGR------LNEAENVLME 416



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 167/384 (43%), Gaps = 20/384 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++++      +      L+N MR   +  +  T+ +++R       +E A    
Sbjct: 180 NVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL 239

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            +M+  G+  +   +N L++ALCK     +A  +FD ++ R I P++ T++ L+ G  K 
Sbjct: 240 RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKS 299

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A +   +MV  GC PD  TY   ++ LCK     E L  +  M     +P++  Y
Sbjct: 300 GKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNY 359

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++H    E        T+ EM  +G   DV  Y   + A+C   +      VL +M+ 
Sbjct: 360 TIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSK 419

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFC------- 385
            GV  ++   N +++G    G+TD A  + ++M  +       TY ++++          
Sbjct: 420 NGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVED 479

Query: 386 ----------QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
                     +  EL   F ++  MK   F+P+  T+S ++ G  + G   ++  L+  M
Sbjct: 480 VLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLM 539

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR 459
            E  I  + + +  L     K  R
Sbjct: 540 KEDSISLNEDIYTALVTCFCKSKR 563



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 149/378 (39%), Gaps = 59/378 (15%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S IE L K++  Q     +  M  K +  +   + I++ K  + +       T+  M
Sbjct: 323 TYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEM 382

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
              G   ++  +   + A C    + +A+ +  +  K+    D+  Y+ L++G       
Sbjct: 383 VSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQT 442

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMV----------DVL-------CKAGRVDEALGIVK 259
             A  I ++M      P+  TY I++          DVL        KA  + +  G+  
Sbjct: 443 DHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFD 502

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      P S  YS ++  +  + R E+A      M+++ I  +  +Y AL+  FCK+ 
Sbjct: 503 VMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSK 562

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379
           ++ + + ++  M   G  P   +   +L+GLI  G+TD+A  +F                
Sbjct: 563 RYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMN-------------- 608

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG---IVSDSCVLLEDMI 436
                                + K + P    + V+I+GL  KG   I  +  ++LE M 
Sbjct: 609 --------------------SRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERM- 647

Query: 437 EKGIRPSGETFGKLRKLL 454
               RPS +T+  L + L
Sbjct: 648 --NCRPSHQTYAMLTEEL 663


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 202/400 (50%), Gaps = 8/400 (2%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV-ETFCII 137
           +A  FF WA++Q  Y H    Y+SM+E L+K +  Q    ++  M+ + +    E F  +
Sbjct: 192 VALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRV 251

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRF 196
           M  Y+R  ++ +A+    +MQ+ GV  NL   N  +    ++  + KA    + M+    
Sbjct: 252 MVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGI 311

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P+  TY+ ++ G+     +  A E+  +M   GC PD V+Y  ++  LCK  R+ E   
Sbjct: 312 VPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRD 371

Query: 257 IVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           ++K M  +  + R     Y+ L+H     +  ++A+    + E+ G   D   Y+A++ A
Sbjct: 372 LMKKMAKEHGLVR-DQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHA 430

Query: 315 FCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEA 372
            CK  +      ++ +M SKG   P+  T   ++NG    GE D+A ++ + M     + 
Sbjct: 431 LCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKP 490

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  +YT ++   C+ G+  +A ++    + + + P+  T+SVL++GL  +G +S++C ++
Sbjct: 491 NTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVV 550

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            +M+ KG  P       L + L ++GR  +  KF++E +N
Sbjct: 551 REMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 590



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 162/343 (47%), Gaps = 5/343 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
           +Y++++  L K ++   + DL+  M  +  L  +  T+  ++    +    +EA++    
Sbjct: 352 SYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKD 411

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDP 214
            ++ G   +   ++ ++ ALCK   + +A+++ + M  K    PD  TY+ ++ G+ +  
Sbjct: 412 AEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLG 471

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A+++ + M   G  P+ V+Y  +++ LC+ G+  EA  ++   +     P S  YS
Sbjct: 472 EVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYS 531

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           VL+H    E ++ +A D   EM   G        N L+ + C+  +     + +++  +K
Sbjct: 532 VLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNK 591

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKA 393
           G A N      +++G     E D A  V   M  + + AD  TYT ++    + G + +A
Sbjct: 592 GCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEA 651

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
            ++ K M  K   P+  T+  +I+  C    V D   +LE MI
Sbjct: 652 TELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMI 694



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 169/401 (42%), Gaps = 44/401 (10%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           H ++  + ++   +  W+  +  + +   R L     C ++R     +   +  Y  +  
Sbjct: 144 HPLVREIGRLIGLRSSWNPKHEGQMRNLLRSLKPSQVCAVLRSQDDERVALKFFYWADRQ 203

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNL 216
            +Y    +   +  +L  L K+K  + A+ +   MK R I  + + +  ++  + +   L
Sbjct: 204 WRY--RHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQL 261

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++   M   G  P+++     +DV  +A R+++AL  ++ M      P    Y+ +
Sbjct: 262 RDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCM 321

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKG 335
           +  Y   +R+E+A++   +M   G L D   Y  ++G  CK  +   V  ++K M    G
Sbjct: 322 IRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHG 381

Query: 336 VAPNSRTCNIILNGLIGRGETDEAY--------RVFR-----------------RMIKL- 369
           +  +  T N +++ L      DEA         + FR                 RM +  
Sbjct: 382 LVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAK 441

Query: 370 -----------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
                      C  D  TYT ++  FC+ GE++KA K+ + M    + P+  +++ L+NG
Sbjct: 442 DLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNG 501

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           LC  G   ++  ++    E+   P+  T+  L   L KEG+
Sbjct: 502 LCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGK 542



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 150/375 (40%), Gaps = 88/375 (23%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCII 137
           A  F K AE ++ +      Y +++ +L K  +     DL+N M +K     +V T+  +
Sbjct: 405 ALWFLKDAE-EKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAV 463

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +  + R+ +V++A     +M  +G   N  ++  LL+ LC++    +A+E+ +  ++++ 
Sbjct: 464 VNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWW 523

Query: 198 -PDSKTYSILLEGWGKDPNLPR-----------------------------------ARE 221
            P+S TYS+L+ G  K+  L                                     AR+
Sbjct: 524 SPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARK 583

Query: 222 IFREMVDTGC-----------------------------------NPDIVTYGIMVDVLC 246
              E ++ GC                                   + D+ TY  +VD L 
Sbjct: 584 FMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALG 643

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV- 305
           K GR+ EA  ++K M      PT   Y  ++H Y    +++D V    +M    IL    
Sbjct: 644 KKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKM----ILRQKC 699

Query: 306 -AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
             +YN +I   C   K +   ++L  +       +++TC  ++ G +  G    AY+V  
Sbjct: 700 KTIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGYLKIGVPLLAYKVAC 759

Query: 365 RM--------IKLCE 371
           RM        +K+CE
Sbjct: 760 RMFNRNLIPDVKMCE 774



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 101/267 (37%), Gaps = 42/267 (15%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ ++M    +  K+ EA      M   G        N LL +LC+     +A++  
Sbjct: 526 NSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFM 585

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + C+      +   ++ ++ G+ ++  L  A  +  +M     + D+ TY  +VD L K 
Sbjct: 586 EECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKK 645

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV--A 306
           GR+ EA  ++K M      PT   Y  ++H Y    +++D V    +M    IL      
Sbjct: 646 GRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKM----ILRQKCKT 701

Query: 307 MYNALIGAFCKANKFKNV-----------------------------------YRVLKDM 331
           +YN +I   C   K +                                     Y+V   M
Sbjct: 702 IYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGYLKIGVPLLAYKVACRM 761

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDE 358
            ++ + P+ + C  +   L+  G  ++
Sbjct: 762 FNRNLIPDVKMCEKLSKRLVVEGAGND 788


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 195/413 (47%), Gaps = 16/413 (3%)

Query: 52  TALDQSGIRVSPEI--VED---VLEKFRNAG-----TLAFCFFKWAEKQQNYEHSVRAYH 101
            A+D   I    E+  VED   +L++F N G     T  F F  W  KQ       +   
Sbjct: 125 AAIDNVLIAYESELWEVEDYIYMLKEFGNTGHFLLATKCFDFIIW--KQNGRIAKGKLVS 182

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLN-VETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +MI +L ++ +      L  + R +   N V +F  ++  Y R     +AV  F  M+ +
Sbjct: 183 TMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSW 242

Query: 161 GVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPR 218
           GV  NL ++N L+ A  K + +     + FD M  +  +PD  TY+ LL           
Sbjct: 243 GVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWET 302

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A+++  EM   G   D  TY   +D LCK G++D A  +++ M S    PT   YS ++ 
Sbjct: 303 AQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMID 362

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                N +EDA++ + EM+   I  D   YN ++G + K  +F       K+M S G+  
Sbjct: 363 GCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKR 422

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           +  T N +L+G    G  DE  R+F  M       +  TY+ MI ++ +GG  ++A  V+
Sbjct: 423 DVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVY 482

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           K  K  +    +  ++ +I+ LC  G+V  S +LL  MIEKGI+P+  TF  +
Sbjct: 483 KDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSI 535



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 2/223 (0%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M+  L + G ++ AL + +S        T + +S ++  YG      DAVD F  M   G
Sbjct: 184 MIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWG 243

Query: 301 ILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           +  ++  YN+LI A  K    F  V +   +M ++G+ P+  T N +L+    +G  + A
Sbjct: 244 VYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETA 303

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
            ++   M  K    DA TY   +   C+GG+++ A +V + M  +R  P++ T+S +I+G
Sbjct: 304 QKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDG 363

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                ++ D+  L E+M  + I     ++  +  +  K GR D
Sbjct: 364 CAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFD 406



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 139/348 (39%), Gaps = 63/348 (18%)

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E A    + M + G+ ++   +N  L  LCK   +  A+ + + M  R + P   TYS +
Sbjct: 301 ETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTM 360

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G  K   L  A  ++ EM     + D V+Y  MV +  K GR DEA+G  K M+S   
Sbjct: 361 IDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGM 420

Query: 267 R-----------------------------------PTSFIYSVLVHTYGVENRIEDAVD 291
           +                                   P +  YS ++  Y      ++A+D
Sbjct: 421 KRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMD 480

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN--- 348
            + + +K  +  DV  Y ++I + CK    ++   +L  M  KG+ PN  T N I++   
Sbjct: 481 VYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASR 540

Query: 349 -------GLIGRGETDE--AYRVFRRMIKLCEADADTYTMMIKMFCQ-----GGELEKAF 394
                  G+ G  +  E    ++   +I     +      ++KMF Q      G  EK  
Sbjct: 541 QSPTLEYGVHGSSQAVEYPTEQLSSMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDR 600

Query: 395 K--------VWKYMKLKRF--IPSMHTFSVLINGLCDKGIVSDSCVLL 432
           K        +W + K+      P++ TFS ++N         D+ +LL
Sbjct: 601 KGRQDQHCILWLFQKMHELNIKPNVVTFSAILNACSRCNSFEDASMLL 648



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 143/349 (40%), Gaps = 19/349 (5%)

Query: 140 KYARVQKVEEAV-YTFNVMQKYGVTQN-LAAFNG----------LLSALCKSKNVRKAQE 187
           K+A     +EA+ Y FN         N L A+            +L     + +   A +
Sbjct: 103 KHAHSAAADEALSYLFNAGNNIAAIDNVLIAYESELWEVEDYIYMLKEFGNTGHFLLATK 162

Query: 188 IFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
            FD +   ++  I   K  S ++   G+   +  A  +F      G    + ++  M+  
Sbjct: 163 CFDFIIWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISA 222

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE-DAVDTFL-EMEKNGIL 302
             + G   +A+ + +SM S    P    Y+ L+   G +  ++ D V  F  EM   GI+
Sbjct: 223 YGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDA-GAKGEVDFDVVVKFFDEMLAEGIV 281

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D   YN+L+        ++   ++L +M+ KG+  ++ T N  L+ L   G+ D A RV
Sbjct: 282 PDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRV 341

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M  +       TY+ MI    +   LE A  +++ MKL+       +++ ++     
Sbjct: 342 LEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAK 401

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            G   ++    ++M   G++    T+  L     + G  D ++ L E+M
Sbjct: 402 LGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEM 450



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 33/200 (16%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           + S ++ T G    I  A+  F      G    V  ++A+I A+ +   F +   + + M
Sbjct: 180 LVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSM 239

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
            S GV PN  + N +++    +GE D                   + +++K F +     
Sbjct: 240 RSWGVYPNLISYNSLIDA-GAKGEVD-------------------FDVVVKFFDE----- 274

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
                   M  +  +P   T++ L++    KG+   +  LL +M +KGI     T+    
Sbjct: 275 --------MLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYL 326

Query: 452 KLLIKEGREDVLKFLQEKMN 471
             L K G+ D+ + + E+M+
Sbjct: 327 DTLCKGGQIDLARRVLEEMS 346


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 194/413 (46%), Gaps = 7/413 (1%)

Query: 54  LDQSGIRVSPEIV--EDVLEKFRNAG-TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + + G   SP++V    V+  F N G T   C       +Q  +  V  Y+ +I++L K 
Sbjct: 254 MAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKA 313

Query: 111 RQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           R       ++  M T     +  T+  ++  YA + +++EA   F  M+K G+  N+   
Sbjct: 314 RAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTC 373

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N  L++LCK    ++A E FD M  +   PD  +Y  LL G+  +        +F  M  
Sbjct: 374 NSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKS 433

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G   +   + I++    K G VD+A+ I   M      P    YS ++ T+    R+ D
Sbjct: 434 NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTD 493

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIIL 347
           A++ F +M   GI  + A+Y+++I  FC          ++ +M +KG+  P+    + ++
Sbjct: 494 AMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVI 553

Query: 348 NGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           N L   G   +A+ +F     + E     T+  +I  +C  G+++KAFK+   M++    
Sbjct: 554 NSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVE 613

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P + T++ L++G    G ++D   L  +M  KG++P+  T+G +   L + GR
Sbjct: 614 PDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 181/402 (45%), Gaps = 42/402 (10%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTF-NVM 157
           Y+ +++   + R+  +   L    +RT   ++  T   +++      + EEAV    + M
Sbjct: 160 YNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRM 219

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDP 214
            + G   N  +++ +L ALC +   ++A ++   M  +     PD   YS ++ G+  + 
Sbjct: 220 SELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEG 279

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
              +A  +F EM   G  PD+VTY +++D LCKA  +D+A  +++ M +   +P +  YS
Sbjct: 280 ETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYS 339

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK-------------- 320
            ++H Y    R+++A   F EM+K G++ ++   N+ + + CK  +              
Sbjct: 340 CMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAK 399

Query: 321 ---------------------FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
                                F ++  +   M S G+A N     I+++    RG  D+A
Sbjct: 400 GHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDA 459

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +F  M +     D  TY+ +I  F + G L  A + +  M  +   P+   +S +I G
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQG 519

Query: 419 LCDKGIVSDSCVLLEDMIEKGI-RPSGETFGKLRKLLIKEGR 459
            C  G +  +  L+ +MI KGI RP    F  +   L K+GR
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGR 561



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 180/385 (46%), Gaps = 6/385 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFN 155
           +Y  ++++L      Q   DL+  M  +      +V  +  ++  +    +  +A   F+
Sbjct: 230 SYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFH 289

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            M + GV  ++  +N ++ ALCK++ + KA+ +   M  D   PD+ TYS ++ G+    
Sbjct: 290 EMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLG 349

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++FREM   G  P+IVT    +  LCK GR  EA     SM +   +P  F Y 
Sbjct: 350 RLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYC 409

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H Y  E    D +  F  M+ NGI A+  ++  LI A+ K     +   +  +M  +
Sbjct: 410 TLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQ 469

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           GV+P+  T + +++     G   +A   F +M+ +  + +   Y+ +I+ FC  G L KA
Sbjct: 470 GVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKA 529

Query: 394 FKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
            ++   M  K    P +  FS +IN LC  G V D+  + +   + G RP   TF  L  
Sbjct: 530 KELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLID 589

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEP 477
                G+ D    + + M ++  EP
Sbjct: 590 GYCLVGKMDKAFKILDAMEVVGVEP 614



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 177/407 (43%), Gaps = 39/407 (9%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           + ++  + +Y +++   A    +  M  L N+M++  +  N   F I++  YA+   V++
Sbjct: 399 KGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDD 458

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+  F  MQ+ GV+ ++  ++ ++S   +   +  A E F+ M  R I P++  YS +++
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQ 518

Query: 209 GWGKDPNLPRAREIFREMV------------------------------------DTGCN 232
           G+     L +A+E+  EM+                                    D G  
Sbjct: 519 GFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGER 578

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P ++T+  ++D  C  G++D+A  I+ +M+     P    Y+ L+  Y    RI D +  
Sbjct: 579 PGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTL 638

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F EM++ G+  +   Y  ++    +A +     +   +M   G         IIL GL  
Sbjct: 639 FREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCR 698

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
               DEA  +F+++  +  +        MI    +    E+A +++  +     +P+  T
Sbjct: 699 NNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNEST 758

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           + V+I  L   G V D+  +   M + GI P      ++ ++L+++G
Sbjct: 759 YGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKG 805



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 167/379 (44%), Gaps = 9/379 (2%)

Query: 52  TALDQSGIRVSPEIV--EDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLA 108
           T + Q G  VSP++V    V+  F   G L     K+ +   +  + +   Y S+I+   
Sbjct: 464 TEMQQQG--VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFC 521

Query: 109 KIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
                    +LV+ M  K +   ++  F  ++    +  +V +A   F++    G    +
Sbjct: 522 MHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGV 581

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
             FN L+   C    + KA +I D M+   + PD  TY+ LL+G+ K+  +     +FRE
Sbjct: 582 ITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFRE 641

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M   G  P+ VTYGIM+  L +AGR   A      M  +    T  IY +++      N 
Sbjct: 642 MQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNC 701

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++A+  F ++    +   + + N +I A  K  + +    +   +++ G+ PN  T  +
Sbjct: 702 ADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGV 761

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++  L+  G  ++A  +F  M K      +     +I+M  + GE+ KA      +  KR
Sbjct: 762 MIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKR 821

Query: 405 FIPSMHTFSVLINGLCDKG 423
            +    T S++++    KG
Sbjct: 822 ILLEASTTSLMLSLFSRKG 840



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 7/303 (2%)

Query: 100 YHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           + S+I SL K   +     ++DL   +  +    V TF  ++  Y  V K+++A    + 
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERP--GVITFNSLIDGYCLVGKMDKAFKILDA 606

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M+  GV  ++  +N LL    K+  +     +F  M+ + + P++ TY I+L G  +   
Sbjct: 607 MEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              AR+ F EM+++G    +  YGI++  LC+    DEA+ + + + +   + +  I + 
Sbjct: 667 TVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNT 726

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +++      R E+A + F  +  +G+L + + Y  +I    K    ++   +   M   G
Sbjct: 727 MINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSG 786

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
           + P SR  N I+  L+ +GE  +A     ++  K    +A T ++M+ +F + G+ ++  
Sbjct: 787 IVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQEDI 846

Query: 395 KVW 397
           K+ 
Sbjct: 847 KLL 849



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 197 IPDSKTYSILLEGW--GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           +P   TY+IL++     + P+L  A  +F  ++ TG   D +T   ++  LC A R +EA
Sbjct: 154 VPTFCTYNILMDCCCRARRPDLGLA--LFGCILRTGLKMDQITANTLLKCLCYANRTEEA 211

Query: 255 LGI-VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNAL 311
           + + +  M    C P +  YS+++      +  + A+D    M K G     DV  Y+ +
Sbjct: 212 VNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTV 271

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I  F    +      +  +M  +GV P+  T N+I++ L      D+A  V R+M     
Sbjct: 272 IHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGA 331

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY+ MI  +   G L++A K+++ MK +  IP++ T +  +  LC  G   ++  
Sbjct: 332 QPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAE 391

Query: 431 LLEDMIEKGIRP 442
             + M  KG +P
Sbjct: 392 FFDSMTAKGHKP 403



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 4/232 (1%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P   TY I++D  C+A R D  L +   +  T  +      + L+      NR E+AV+ 
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 293 FLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA--PNSRTCNIILNG 349
            L  M + G + +   Y+ ++ A C  +  +    +L+ M  +G A  P+    + +++G
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               GET +A  +F  M +   + D  TY ++I   C+   ++KA  V + M      P 
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             T+S +I+G    G + ++  +  +M ++G+ P+  T       L K GR 
Sbjct: 335 TVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRS 386



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-RRM 366
           YN L+   C+A +      +   +   G+  +  T N +L  L     T+EA  V   RM
Sbjct: 160 YNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRM 219

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLINGLCDKG 423
            +L C  +A +Y++++K  C     ++A  + + M  +     P +  +S +I+G  ++G
Sbjct: 220 SELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEG 279

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
               +C L  +M  +G++P   T+  +   L K    D  + +  +M     +P
Sbjct: 280 ETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQP 333



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 107/237 (45%), Gaps = 2/237 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  +  Y+++++   K  +      L   M+ K +  N  T+ I++    R  +   A  
Sbjct: 613 EPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARK 672

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT-YSILLEGWG 211
            F+ M + G T  ++ +  +L  LC++    +A  +F  +    +  S T  + ++    
Sbjct: 673 KFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMY 732

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K      A+E+F  +  +G  P+  TYG+M+  L K G V++A  +  SM+ +   P S 
Sbjct: 733 KVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSR 792

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           + + ++     +  I  A +   +++   IL + +  + ++  F +  K++   ++L
Sbjct: 793 LLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQEDIKLL 849


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 159/325 (48%), Gaps = 2/325 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+  T+  ++     V + +E       M +  V  +   FN L+ ALCK   + +AQ 
Sbjct: 227 LLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQG 286

Query: 188 IFDCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M  R   PD  TY+ L+EG+    N+  ARE+F  MV  G  PD++ Y +++D  C
Sbjct: 287 VLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYC 346

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K   VDEA+ + K + +    PT   Y+ L+       RI        EM  +    DV 
Sbjct: 347 KTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVV 406

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN LI A CK  +      VL  M  KGV PN  T N +++G   R   + A  +F RM
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +K   E D   Y ++I  +C+   +++A  ++K M+ K  IP + +++ LI+GLC+ G +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKL 450
                LL++M + G  P   T+  L
Sbjct: 527 PHVQELLDEMCDSGQSPDVITYNIL 551



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 184/377 (48%), Gaps = 4/377 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTF 154
           +  Y++++E            +L N M  KR L  +V  + +++  Y + + V+EA+  F
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNRM-VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKD 213
             +    +   +A++N L+  LC S  +   +++ D M      PD  TY+IL++   K+
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   M+  G  P+IVTY  M+D  C    V+ A  I   M  +   P    Y
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +VL++ Y     +++A+  F EM    ++ D+A YN+LI   C   +  +V  +L +M  
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
            G +P+  T NI+L+        D+A  +FR++++    D  T   ++   C+G +L+ A
Sbjct: 539 SGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
               K++ +    P++ T+++LIN LC  G   ++ +LL  M +    P   TF  +  +
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 454 LIKEGREDVLKFLQEKM 470
           L++    D  + L+E+M
Sbjct: 659 LLQRNETDKAEKLREEM 675



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 5/391 (1%)

Query: 72  KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LN 130
           +FRN      CF +          SV  +  ++ ++ ++  Y     L   +++K +  +
Sbjct: 32  RFRNVDDAVTCFNRMVRVFPPPPTSV--FDKLLGAIVRMGHYPTAISLFTQLQSKGISPS 89

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF- 189
           + TF I++  Y        A      + K G   NL  FN +++  C +  + KA +   
Sbjct: 90  IATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQ 149

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           + +   ++ D  TY  L+ G  K+  +  A  + +EM  +   P++V Y  ++D LCK G
Sbjct: 150 NLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDG 209

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            V +ALG+   +        +  Y+ L+       R ++      +M +  +  D   +N
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI A CK  +      VL  M+ +G  P+  T N ++ G   R    EA  +F RM+K 
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E D   Y ++I  +C+   +++A  ++K +  K  +P++ +++ LI+GLC+ G +S  
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             LL++M      P   T+  L   L KEGR
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGR 420



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 75/395 (18%)

Query: 120 VNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           V AM +KR    ++ T+  +M  Y   + V EA   FN M K G+  ++  +N L+   C
Sbjct: 287 VLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYC 346

Query: 178 KSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           K+K V +A  +F   C K+  +P   +Y+ L++G      +   +++  EM  +   PD+
Sbjct: 347 KTKMVDEAMVLFKELCNKN-LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDV 405

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           VTY I++D LCK GR+ EALG++  M     +P    Y+ ++  Y + N +  A D F  
Sbjct: 406 VTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNR 465

Query: 296 MEKNGI-----------------------------------LADVAMYNALIGAFCKANK 320
           M K+G+                                   + D+A YN+LI   C   +
Sbjct: 466 MVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGR 525

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI------------- 367
             +V  +L +M   G +P+  T NI+L+        D+A  +FR+++             
Sbjct: 526 IPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAI 585

Query: 368 --------KL--------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
                   KL              C  +  TYT++I   C+ G   +A  +   M+    
Sbjct: 586 VDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDR 645

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            P   TF ++I  L  +     +  L E+MI +G+
Sbjct: 646 PPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 166/337 (49%), Gaps = 2/337 (0%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSK 201
           R+     A+  F  +Q  G++ ++A F  L++      +   A  +    +K  + P+  
Sbjct: 67  RMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLV 126

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           T++ ++ G+  +  + +A +  + ++  G   D  TYG +++ L K G++  AL +++ M
Sbjct: 127 TFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEM 186

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
           + +  +P   +YS L+     +  + DA+    ++ + GIL D   YN+LI   C   ++
Sbjct: 187 EKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRW 246

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMM 380
           + V ++L  M  + V P+  T NI+++ L   G   EA  V   M K  E  D  TY  +
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           ++ +C    + +A +++  M  +   P +  ++VLI+G C   +V ++ VL +++  K +
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            P+  ++  L   L   GR   +K L ++M+   + P
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 121/274 (44%), Gaps = 38/274 (13%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y++M++         +  D+ N M ++    ++  + +++  Y + + V+EA+  F
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLF 498

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKD 213
             M+   +  ++A++N L+  LC    +   QE+ D M D    PD  TY+ILL+ + K 
Sbjct: 499 KEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKT 558

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               +A  +FR++V+ G  PD  T   +VD LCK  ++  A                   
Sbjct: 559 QPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMA------------------- 598

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
                        EDA+   L    +G   +V  Y  LI A CK   F     +L  M  
Sbjct: 599 -------------EDALKHLL---MHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMED 642

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
               P++ T  II+  L+ R ETD+A ++   MI
Sbjct: 643 NDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 1/226 (0%)

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C+   VD+A+     M      P + ++  L+           A+  F +++  GI   +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           A +  LI  +   +     + +L  +   G  PN  T N I+NG    G   +A    + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 366 MIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           ++      D  TY  +I    + G+++ A  + + M+     P++  +S LI+GLC  G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           VSD+  L   + E+GI     T+  L       GR   +  L  KM
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKM 256


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 159/325 (48%), Gaps = 2/325 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+  T+  ++     V + +E       M +  V  +   FN L+ ALCK   + +AQ 
Sbjct: 227 LLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQG 286

Query: 188 IFDCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M  R   PD  TY+ L+EG+    N+  ARE+F  MV  G  PD++ Y +++D  C
Sbjct: 287 VLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYC 346

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K   VDEA+ + K + +    PT   Y+ L+       RI        EM  +    DV 
Sbjct: 347 KTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVV 406

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN LI A CK  +      VL  M  KGV PN  T N +++G   R   + A  +F RM
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +K   E D   Y ++I  +C+   +++A  ++K M+ K  IP + +++ LI+GLC+ G +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKL 450
                LL++M + G  P   T+  L
Sbjct: 527 PHVQELLDEMCDSGQSPDVITYNIL 551



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 184/377 (48%), Gaps = 4/377 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTF 154
           +  Y++++E            +L N M  KR L  +V  + +++  Y + + V+EA+  F
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNRM-VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKD 213
             +    +   +A++N L+  LC S  +   +++ D M      PD  TY+IL++   K+
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   M+  G  P+IVTY  M+D  C    V+ A  I   M  +   P    Y
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +VL++ Y     +++A+  F EM    ++ D+A YN+LI   C   +  +V  +L +M  
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
            G +P+  T NI+L+        D+A  +FR++++    D  T   ++   C+G +L+ A
Sbjct: 539 SGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
               K++ +    P++ T+++LIN LC  G   ++ +LL  M +    P   TF  +  +
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 454 LIKEGREDVLKFLQEKM 470
           L++    D  + L+E+M
Sbjct: 659 LLQRNETDKAEKLREEM 675



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 5/391 (1%)

Query: 72  KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LN 130
           +FRN      CF +          SV  +  ++ ++ ++  Y     L   +++K +  +
Sbjct: 32  RFRNVDDAVTCFNRMVRVFPPPPTSV--FDKLLGAIVRMGHYPTAISLFTQLQSKGISPS 89

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF- 189
           + TF I++  Y        A      + K G   NL  FN +++  C +  + KA +   
Sbjct: 90  IATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQ 149

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           + +   ++ D  TY  L+ G  K+  +  A  + +EM  +   P++V Y  ++D LCK G
Sbjct: 150 NLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDG 209

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            V +ALG+   +        +  Y+ L+       R ++      +M +  +  D   +N
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI A CK  +      VL  M+ +G  P+  T N ++ G   R    EA  +F RM+K 
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E D   Y ++I  +C+   +++A  ++K +  K  +P++ +++ LI+GLC+ G +S  
Sbjct: 330 GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHV 389

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             LL++M      P   T+  L   L KEGR
Sbjct: 390 KKLLDEMHGSAQPPDVVTYNILIDALCKEGR 420



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 75/395 (18%)

Query: 120 VNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           V AM +KR    ++ T+  +M  Y   + V EA   FN M K G+  ++  +N L+   C
Sbjct: 287 VLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYC 346

Query: 178 KSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           K+K V +A  +F   C K+  +P   +Y+ L++G      +   +++  EM  +   PD+
Sbjct: 347 KTKMVDEAMVLFKELCNKN-LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDV 405

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           VTY I++D LCK GR+ EALG++  M     +P    Y+ ++  Y + N +  A D F  
Sbjct: 406 VTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNR 465

Query: 296 MEKNGI-----------------------------------LADVAMYNALIGAFCKANK 320
           M K+G+                                   + D+A YN+LI   C   +
Sbjct: 466 MVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGR 525

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI------------- 367
             +V  +L +M   G +P+  T NI+L+        D+A  +FR+++             
Sbjct: 526 IPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAI 585

Query: 368 --------KL--------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
                   KL              C  +  TYT++I   C+ G   +A  +   M+    
Sbjct: 586 VDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDR 645

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            P   TF ++I  L  +     +  L E+MI +G+
Sbjct: 646 PPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 166/337 (49%), Gaps = 2/337 (0%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSK 201
           R+     A+  F  +Q  G++ ++A F  L++      +   A  +    +K  + P+  
Sbjct: 67  RMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLV 126

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           T++ ++ G+  +  + +A +  + ++  G   D  TYG +++ L K G++  AL +++ M
Sbjct: 127 TFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEM 186

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
           + +  +P   +YS L+     +  + DA+    ++ + GIL D   YN+LI   C   ++
Sbjct: 187 EKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRW 246

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMM 380
           + V ++L  M  + V P+  T NI+++ L   G   EA  V   M K  E  D  TY  +
Sbjct: 247 QEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNAL 306

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           ++ +C    + +A +++  M  +   P +  ++VLI+G C   +V ++ VL +++  K +
Sbjct: 307 MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            P+  ++  L   L   GR   +K L ++M+   + P
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y++M++         +  D+ N M ++    ++  + +++  Y + + V+EA+  F
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLF 498

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKD 213
             M+   +  ++A++N L+  LC    +   QE+ D M D    PD  TY+ILL+ + K 
Sbjct: 499 KEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKT 558

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
               +A  +FR++V+ G  PD  T   +VD LCK  ++  A   +K +    C P    Y
Sbjct: 559 QPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L++    +    +A+    +ME N    D   +  +IG   + N+     ++ ++M +
Sbjct: 618 TILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIA 677

Query: 334 KGV 336
           +G+
Sbjct: 678 RGL 680



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 1/226 (0%)

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C+   VD+A+     M      P + ++  L+           A+  F +++  GI   +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           A +  LI  +   +     + +L  +   G  PN  T N I+NG    G   +A    + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 366 MIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           ++      D  TY  +I    + G+++ A  + + M+     P++  +S LI+GLC  G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           VSD+  L   + E+GI     T+  L       GR   +  L  KM
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKM 256


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 199/439 (45%), Gaps = 44/439 (10%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           + P+ V  V+ +++N    A   F   + +  ++H++  Y  MIE L    +++ M D++
Sbjct: 5   LQPKHVAAVI-RYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVL 63

Query: 121 NAMRTK---RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
             MR     +ML    +  IMR Y R  KV+EAV  F  M  Y    ++ ++N +++ L 
Sbjct: 64  AEMRKNVDSKMLE-GVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILV 122

Query: 178 KSKNVRKAQEIFDCMKDRFI-PDSKTYSI------------------------------- 205
           +     +A +++  MKD  I PD  T++I                               
Sbjct: 123 EYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAV 182

Query: 206 ----LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV-KS 260
               ++ G+ K+     A  +F EM+  G  PDI+T+  ++ VLCK G V E+  +  K 
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKV 242

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M   VC P  F +++ +     +  I++A      +   G+  DV  YN LI  FCK +K
Sbjct: 243 MKRGVC-PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR-RMIKLCEADADTYTM 379
                  L  M + GV PN  T N I+NG    G    A ++ R  M K    D  TY+ 
Sbjct: 302 LVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSS 361

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C  G++ +A  V+     K F  S+  ++ L+ GL  +G+V  +  L++DM+E G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 440 IRPSGETFGKLRKLLIKEG 458
             P   T+  +   L K G
Sbjct: 422 CSPDIWTYNLVVNGLCKMG 440



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 166/370 (44%), Gaps = 39/370 (10%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPD 199
           + +  K+ EA    + M   GV  N   +N +++  CK+  ++ A +I  D M   FIPD
Sbjct: 296 FCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPD 355

Query: 200 SKTYSILLEGWGKDPNLPRAREIF-----------------------------------R 224
             TYS L+ G   D ++ RA  +F                                   +
Sbjct: 356 EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMK 415

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           +M++ GC+PDI TY ++V+ LCK G + +A GI+    +  C P  F ++ L+  Y  + 
Sbjct: 416 DMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQR 475

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            ++ A++    M  +GI  DV  YN L+   CKA K  NV    K M  KG  PN  T N
Sbjct: 476 NMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYN 535

Query: 345 IILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM-KL 402
           I++       +  EA  +F+ M  +    D  T   +I   C  GEL+KA++++  + K 
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
            +F  S   F+++IN  C K  VS +  L   M      P   T+  +     K G  D+
Sbjct: 596 YKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDL 655

Query: 463 LK-FLQEKMN 471
              FL E ++
Sbjct: 656 AHTFLLENIS 665



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 175/360 (48%), Gaps = 3/360 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E SV++Y++++  L +   +     +   M+   +  +V T  I M+ +    +   A+ 
Sbjct: 108 EPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALR 167

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
             N M   G   N  ++  ++S   K     +A  +FD M K    PD  T++ L+    
Sbjct: 168 LLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLC 227

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K  N+  + ++F +++  G  P++ T+ I +  LC+ G +DEA  +++S+ S    P   
Sbjct: 228 KKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVI 287

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+  +   +++ +A     +M  +G+  +   YN +I  FCKA   +N  ++L+D 
Sbjct: 288 SYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDA 347

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-RRMIKLCEADADTYTMMIKMFCQGGEL 390
             KG  P+  T + ++NGL   G+ + A  VF   M K  +     Y  ++K   + G +
Sbjct: 348 MFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLV 407

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +A ++ K M      P + T+++++NGLC  G +SD+  +L D I KG  P   TF  L
Sbjct: 408 LQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTL 467



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 152/334 (45%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ TF I ++   R   ++EA      +   G+T ++ ++N L+   CK   + +A+   
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+ ++ G+ K   +  A +I R+ +  G  PD  TY  +++ LC  
Sbjct: 310 HKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCND 369

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A+ +         + +  +Y+ LV     +  +  A+    +M ++G   D+  Y
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTY 429

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK     +   +L D  +KG  P+  T N +++G   +   D+A  +   M+ 
Sbjct: 430 NLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS 489

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TY  ++   C+  +L+     +K M  K   P++ T+++LI   C    VS+
Sbjct: 490 HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSE 549

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +  L ++M  +G+ P   T   L   L   G  D
Sbjct: 550 AMELFKEMKTRGLTPDIVTLCTLICGLCSNGELD 583



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 46/327 (14%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           F++  EK   ++HS+  Y+++++ L+K    ++  Q+M D+   M      ++ T+ +++
Sbjct: 379 FYEAMEK--GFKHSIILYNTLVKGLSKQGLVLQALQLMKDM---MEHGCSPDIWTYNLVV 433

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
               ++  + +A    N     G   ++  FN L+   CK +N+ KA EI D M    I 
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY+ LL G  K   L    + F+ M++ GC P+I+TY I+++  CK  +V EA+ +
Sbjct: 494 PDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMEL 553

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNALIGAFC 316
            K M +    P       L+        ++ A + F+ +EK    +   A++N +I AFC
Sbjct: 554 FKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFC 613

Query: 317 K------ANKFKN------------VYRVLKDMN-----------------SKGVAPNSR 341
                  A K  +             YRV+ D                   SKG+ P+  
Sbjct: 614 XKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFT 673

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIK 368
           TC  +LN L       EA  +   M++
Sbjct: 674 TCGKVLNCLCVTHRLSEAVVIINLMVQ 700



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 210 WGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CR 267
           +  DP    A ++F ++  + G    + TY  M++ L   G+ +    ++  M   V  +
Sbjct: 16  YQNDP--LNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSK 73

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
               +Y  ++  YG + ++++AV+ F  M+       V  YNA++    +   F   ++V
Sbjct: 74  MLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKV 133

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
              M   G+ P+  T  I +      G    A R+   M  + CE +A +Y  +I  F +
Sbjct: 134 YMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYK 193

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
                +A+ ++  M  +   P + TF+ LI+ LC KG V +S  L   ++++G+ P+  T
Sbjct: 194 ENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 447 FGKLRKLLIKEGRED 461
           F    + L ++G  D
Sbjct: 254 FNIFIQGLCRKGAID 268


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 194/428 (45%), Gaps = 54/428 (12%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIM 138
           FF W    + + H  +++  M+E L + R      + + ++  +      L    F  ++
Sbjct: 90  FFDWV-YNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLI 148

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-- 196
           R Y      +E+V  F  M+K G++ ++  FN LLS L K      A ++FD M+  +  
Sbjct: 149 RSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGV 208

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PDS T++ L+ G+ K+  + +A  IF+EM    CNPD+VTY  ++D LC+AG+V  A  
Sbjct: 209 TPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHN 268

Query: 257 IVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           ++  M   +T   P    Y+ L+  Y ++  I++A+  F EM   G+  +   YN LI  
Sbjct: 269 LLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKG 328

Query: 315 FCKANKFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL---- 369
             +A+++  +   L   ++    +P++ T NI++      G  D A +VF+ M+ +    
Sbjct: 329 LSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHP 388

Query: 370 ---------------------------------------CEADADTYTMMIKMFCQGGEL 390
                                                  C+  A  Y +M +  C  G+ 
Sbjct: 389 DSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKA 448

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++A KV++ + +KR      ++  LI GLC +G    +  LL  M+ +   P  ET+  L
Sbjct: 449 KQAEKVFRQL-MKRGAQDPSSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVL 507

Query: 451 RKLLIKEG 458
              L+K G
Sbjct: 508 IDGLLKIG 515



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 19/399 (4%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQK 146
           K+     SV  ++S++  L K  +  +  D+ + MR    +  +  TF  ++  + +   
Sbjct: 168 KKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSM 227

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI---PDSKTY 203
           V++A   F  M+ Y    ++  +N ++  LC++  V+ A  + + M  +     P+  +Y
Sbjct: 228 VDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSY 287

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + LL G+     +  A  +F EM+  G  P+ VTY  ++  L +A R DE  G +   D+
Sbjct: 288 TTLLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDA 347

Query: 264 -TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
            T   P +  +++L+  +     ++ A+  F EM    +  D A Y+ LI   C  N+F 
Sbjct: 348 FTTFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFD 407

Query: 323 NVYRVLKDMNSKGVAPNSRTC-------NIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
               +  ++  K V      C       N++   L   G+  +A +VFR+++K    D  
Sbjct: 408 KAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGAQDPS 467

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +Y  +I   C+ G+ + A+++   M  + F+P   T+ VLI+GL   G    +   L+ M
Sbjct: 468 SYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRM 527

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474
           +     P   TF  +   L+K       KF  +   LL 
Sbjct: 528 LRSSYLPVATTFHSVLAELVKR------KFANDSFGLLT 560



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/481 (20%), Positives = 190/481 (39%), Gaps = 84/481 (17%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCI 136
           AF  FK  E   +    V  Y+++I+ L +  + +I  +L+N M  K      N+ ++  
Sbjct: 231 AFTIFKEME-LYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTT 289

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF---DCMK 193
           ++R Y   Q+++EA+  F+ M   G+  N   +N L+  L ++    + +      D   
Sbjct: 290 LLRGYCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFT 349

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
             F PD+ T++IL++      +L  A ++F+EM++   +PD  +Y +++  LC     D+
Sbjct: 350 T-FSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDK 408

Query: 254 ALGIVKSM-------DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           A  +   +           C+P +  Y+++        + + A   F ++ K G   D +
Sbjct: 409 AETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGA-QDPS 467

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET----DEAYRV 362
            Y  LI   C+  KFK  Y +L  M  +   P+  T  ++++GL+  GE     D   R+
Sbjct: 468 SYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRM 527

Query: 363 FRR--------------------------------MIKLCEADADTYTMMIKMFCQGGEL 390
            R                                 + K    + D  T  +++     + 
Sbjct: 528 LRSSYLPVATTFHSVLAELVKRKFANDSFGLLTVMLEKRIRQNIDLSTQAVRLVFSSAQK 587

Query: 391 EKAFKVWKYMKLKRFIPSM----------------HTF----------------SVLING 418
           EKAF + + +    ++  M                HT                 + +I G
Sbjct: 588 EKAFLIVRLLYDNGYLIKMEELLDFLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTIIEG 647

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
           LC     S++  L  +++E G          L   L   G+ + L+F+ ++M  + K   
Sbjct: 648 LCKHKRHSEAFSLYNELVELGNHQQLSCHVVLTNALEAAGKWEELQFVSKRMATMRKSDN 707

Query: 479 C 479
           C
Sbjct: 708 C 708


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 189/422 (44%), Gaps = 41/422 (9%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+  L++  I V+ ++V  VL    N+GT +  FF WA    +Y+ +   Y  ++++LA+
Sbjct: 63  LERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLAR 122

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN-VMQKYGVTQNLAA 168
            +Q+Q MW + + M+T   L+      I+ ++ +   V++AV  FN         Q +  
Sbjct: 123 TKQFQPMWKIAHQMQT---LSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEV 179

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N LL ALC+ K    A  +   M +    P+ +TYS+L+ GW     +  A++   EM 
Sbjct: 180 YNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMS 239

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             G NP +    ++VD L  AG ++ A  +V+ M    C P                   
Sbjct: 240 RKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAP------------------- 280

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
                           DV   N+++ A CKA + +    +  D+   GV+PN  T  I++
Sbjct: 281 ----------------DVETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMI 324

Query: 348 NGLIGRGETDEAYRVFRRMIKLCEADADT-YTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
                 G  DEA+R+  R I+       + Y  +IK  C+ G+ + AF  +  MK+K   
Sbjct: 325 PAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHP 384

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P+   +++LI      G   D+   L +M E  + P    F  +   L   G+ D+ + +
Sbjct: 385 PNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMVTDGLKNCGKHDLARKI 444

Query: 467 QE 468
           ++
Sbjct: 445 EQ 446



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 6/307 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           +  LL  L ++K  +   +I   M+          S ++E +GK   + +A E+F +   
Sbjct: 113 YEELLKTLARTKQFQPMWKIAHQMQTL---SPTVVSSIIEEFGKHGLVDQAVEVFNKAKS 169

Query: 229 T-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
              C   I  Y  ++  LC+      A  +++ M      P    YSVLV+ +    +++
Sbjct: 170 ALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMK 229

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A D   EM + G    V   + L+     A   +    +++ M  +G AP+  T N +L
Sbjct: 230 EAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSML 289

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
             +   GE +    ++  + +L    +  TY +MI   C+ G +++AF++          
Sbjct: 290 EAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHR 349

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKF 465
           P    ++ +I  LC  G   D+     DM  KG  P+   +  L  +  + GR  D   +
Sbjct: 350 PFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANY 409

Query: 466 LQEKMNL 472
           L E   L
Sbjct: 410 LVEMTEL 416


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 177/363 (48%), Gaps = 5/363 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   D++  MR +  +  N  T+  ++  + +V +V+EAV  F+ M
Sbjct: 148 YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM 207

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V      +N L+   C    +  A    D M +R +  +  TY++L+     D  
Sbjct: 208 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 267

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E+  EM   G  PD+ TY I+++  CK G V +AL I ++M     R T   Y+ 
Sbjct: 268 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTA 327

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++    + ++++    F E  + GI  D+ +YNALI +   +      + ++ +M  K 
Sbjct: 328 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 387

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           +AP+  T N ++ GL   G  DEA ++   M  +  + D  TY  +I  +   G+++ A 
Sbjct: 388 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDAL 447

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M  K F P++ T++ LI GLC  G   D+  ++++M+E GI P   T+  L + L
Sbjct: 448 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507

Query: 455 IKE 457
             E
Sbjct: 508 TTE 510



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 173/405 (42%), Gaps = 46/405 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           S  + H ++ +L     + +  D+    R +  L   TF I++R      K   A+    
Sbjct: 82  STASLHPLLSALPSAPAFALFADM---FRLRLPLCTTTFNIMLRHLCSAGKPARALELLR 138

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKD 213
            M +     N   +N +++  C    V+ A +I   M++R    P+  TY  ++ GW K 
Sbjct: 139 QMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 194

Query: 214 PNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVD-------------------- 252
             +  A ++F EM+  G   P+ V Y  ++   C  G++D                    
Sbjct: 195 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 254

Query: 253 ---------------EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
                          EA  +V+ M      P  F Y++L++ +  E  ++ A++ F  M 
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 314

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G+ A V  Y ALI A  K  + +   ++  +   +G+ P+    N ++N     G  D
Sbjct: 315 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 374

Query: 358 EAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A+ +   M K   A  D TY  +++  C  G +++A K+   M  +   P + T++ LI
Sbjct: 375 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 434

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +G   KG V D+  +  +M+ KG  P+  T+  L + L K G+ D
Sbjct: 435 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 479



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKD 194
           +++   A V+    ++  ++ M+   +  + A+ + LLSAL  +     A  +F D  + 
Sbjct: 53  LLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRL 108

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R    + T++I+L          RA E+ R+M      P+ VTY  ++   C  GRV  A
Sbjct: 109 RLPLCTTTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAA 164

Query: 255 LGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALI 312
           L I++ M +     P  + Y  ++  +    R+++AV  F EM   G +  +  MYNALI
Sbjct: 165 LDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 224

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
           G +C   K          M  +GVA    T N++++ L   G   EAY +   M  K   
Sbjct: 225 GGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLA 284

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY ++I   C+ G ++KA ++++ M  +    ++ T++ LI  L  KG V ++  L
Sbjct: 285 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 344

Query: 432 LEDMIEKGIRP 442
            ++ + +GIRP
Sbjct: 345 FDEAVRRGIRP 355



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 2/262 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    +    ++LV  M  K +  +V T+ I++  + +   V++A+  F
Sbjct: 251 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 310

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + GV   +  +  L+ AL K   V++  ++FD    R I PD   Y+ L+      
Sbjct: 311 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 370

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ RA EI  EM      PD VTY  ++  LC  GRVDEA  ++  M     +P    Y
Sbjct: 371 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 430

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y ++  ++DA+    EM   G    +  YNALI   CK  +  +   ++K+M  
Sbjct: 431 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 490

Query: 334 KGVAPNSRTCNIILNGLIGRGE 355
            G+ P+  T   ++ GL    E
Sbjct: 491 NGITPDDSTYISLIEGLTTEDE 512


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 177/363 (48%), Gaps = 5/363 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   D++  MR +  +  N  T+  ++  + +V +V+EAV  F+ M
Sbjct: 517 YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM 576

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V      +N L+   C    +  A    D M +R +  +  TY++L+     D  
Sbjct: 577 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 636

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E+  EM   G  PD+ TY I+++  CK G V +AL I ++M     R T   Y+ 
Sbjct: 637 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTA 696

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++    + ++++    F E  + GI  D+ +YNALI +   +      + ++ +M  K 
Sbjct: 697 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 756

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           +AP+  T N ++ GL   G  DEA ++   M  +  + D  TY  +I  +   G+++ A 
Sbjct: 757 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDAL 816

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M  K F P++ T++ LI GLC  G   D+  ++++M+E GI P   T+  L + L
Sbjct: 817 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876

Query: 455 IKE 457
             E
Sbjct: 877 TTE 879



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 173/405 (42%), Gaps = 46/405 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           S  + H ++ +L     + +  D+    R +  L   TF I++R      K   A+    
Sbjct: 451 STASLHPLLSALPSAPAFALFADM---FRLRLPLCTTTFNIMLRHLCSAGKPARALELLR 507

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKD 213
            M +     N   +N +++  C    V+ A +I   M++R    P+  TY  ++ GW K 
Sbjct: 508 QMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 563

Query: 214 PNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVD-------------------- 252
             +  A ++F EM+  G   P+ V Y  ++   C  G++D                    
Sbjct: 564 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623

Query: 253 ---------------EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
                          EA  +V+ M      P  F Y++L++ +  E  ++ A++ F  M 
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 683

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G+ A V  Y ALI A  K  + +   ++  +   +G+ P+    N ++N     G  D
Sbjct: 684 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 743

Query: 358 EAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A+ +   M K   A  D TY  +++  C  G +++A K+   M  +   P + T++ LI
Sbjct: 744 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 803

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +G   KG V D+  +  +M+ KG  P+  T+  L + L K G+ D
Sbjct: 804 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 848



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKD 194
           +++   A V+    ++  ++ M+   +  + A+ + LLSAL  +     A  +F D  + 
Sbjct: 422 LLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRL 477

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R    + T++I+L          RA E+ R+M      P+ VTY  ++   C  GRV  A
Sbjct: 478 RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAA 533

Query: 255 LGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALI 312
           L I++ M +     P  + Y  ++  +    R+++AV  F EM   G +  +  MYNALI
Sbjct: 534 LDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 593

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
           G +C   K          M  +GVA    T N++++ L   G   EAY +   M  K   
Sbjct: 594 GGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLA 653

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY ++I   C+ G ++KA ++++ M  +    ++ T++ LI  L  KG V ++  L
Sbjct: 654 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 713

Query: 432 LEDMIEKGIRP 442
            ++ + +GIRP
Sbjct: 714 FDEAVRRGIRP 724



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 2/262 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    +    ++LV  M  K +  +V T+ I++  + +   V++A+  F
Sbjct: 620 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 679

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + GV   +  +  L+ AL K   V++  ++FD    R I PD   Y+ L+      
Sbjct: 680 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 739

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ RA EI  EM      PD VTY  ++  LC  GRVDEA  ++  M     +P    Y
Sbjct: 740 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 799

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y ++  ++DA+    EM   G    +  YNALI   CK  +  +   ++K+M  
Sbjct: 800 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 859

Query: 334 KGVAPNSRTCNIILNGLIGRGE 355
            G+ P+  T   ++ GL    E
Sbjct: 860 NGITPDDSTYISLIEGLTTEDE 881


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  ++EEA    N M   G   ++  FN L++ALC    + +A ++ 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 190 DCMKDRFI-PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
             +  + + PD  T++IL+    K  DP+L  A  +F EM ++GC PD VTY  ++D LC
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHL--ALRLFEEMKNSGCTPDEVTYNTLIDNLC 437

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G++ +AL ++K M+ST C  ++  Y+ ++     + RIE+A + F +M+  GI  +  
Sbjct: 438 SLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   CK  K  + + ++  M S+G+ PN+ T N IL     +G+  +A  +   M
Sbjct: 498 TFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D  TY  +I   C+ G  + A KV + M++K   P+   ++ ++  L  +  +
Sbjct: 558 TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617

Query: 426 SDSCVLLEDMIEKGIRPSGETF 447
            D+  L  +M E G  P   T+
Sbjct: 618 RDALSLFREMAEVGEPPDALTY 639



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 181/369 (49%), Gaps = 11/369 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFN 155
           V  +++++++L +  Q +    ++  M ++ +   ET F  +M+ +     +E A+    
Sbjct: 181 VVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKA 240

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTYSILLEGW 210
            M + G +      N L++  CK   V  A     QEI     D F PD  TY+  + G 
Sbjct: 241 RMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEI----ADGFEPDQITYNTFVNGL 296

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++ ++  A ++   MV  G +PD+ TY I+V+ LCK G+++EA GI+  M    C P  
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             ++ L+      NR+E+A+D   ++   G+  DV  +N LI A CK        R+ ++
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M + G  P+  T N +++ L   G+  +A  + + M    C     TY  +I   C+   
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +E+A +V+  M L+    +  TF+ LI+GLC    + D+  L+  MI +G++P+  T+  
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536

Query: 450 LRKLLIKEG 458
           +     K+G
Sbjct: 537 ILTHYCKQG 545



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 164/332 (49%), Gaps = 4/332 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++I +L    + +   DL   +  K +  +V TF I++    +V     A+  F 
Sbjct: 356 ITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDP 214
            M+  G T +   +N L+  LC    + KA ++   M+    P S  TY+ +++G  K  
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F +M   G + + +T+  ++D LCK  ++D+A G++  M S   +P +  Y+
Sbjct: 476 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYN 535

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y  +  I+ A D    M  NG   DV  Y  LI   CKA + +   +VL+ M  K
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEK 392
           G+ P  +  N +L  L  R    +A  +FR M ++ E  DA TY ++ +  C+GG  +++
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKE 655

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           AF     M  K FIP   +F +L  GL + G+
Sbjct: 656 AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGM 687



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 201/426 (47%), Gaps = 17/426 (3%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL 107
           +L+ AL +      PE+ E+++ K    G L       AE +++ ++  +   HS ++S 
Sbjct: 60  MLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSY 119

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV------QKVEEAVYTFNVMQKYG 161
              + +    DL+   + + +  ++   ++      V       K+ E+VY+   M   G
Sbjct: 120 EGQQLFDDAVDLI-LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYS--EMGARG 176

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           +  ++  FN L+ ALC++  VR A  + + M  R + PD  T++ L++G+ ++ ++  A 
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +   M++ GC+   VT  ++++  CK GRV++ALG ++   +    P    Y+  V+  
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              + +  A+     M + G   DV  YN ++   CK  + +    +L  M  +G  P+ 
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N ++  L      +EA  + R++ +K    D  T+ ++I   C+ G+   A ++++ 
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF-----GKLRKLL 454
           MK     P   T++ LI+ LC  G +  +  LL+DM   G   S  T+     G  +K+ 
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 455 IKEGRE 460
           I+E  E
Sbjct: 477 IEEAEE 482



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 166/334 (49%), Gaps = 5/334 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSI 205
           V  A+   +VM + G   ++  +N +++ LCK+  + +A+ I + M DR  +PD  T++ 
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+        L  A ++ R++   G +PD+ T+ I+++ LCK G    AL + + M ++ 
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P    Y+ L+       ++  A+D   +ME  G       YN +I   CK  + +   
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            V   M+ +G++ N+ T N +++GL    + D+A+ +  +MI +  + +  TY  ++  +
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHY 541

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G+++KA  + + M    F   + T+  LINGLC  G    +  +L  M  KG+RP+ 
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTP 601

Query: 445 ETFGK-LRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           + +   L+ L  +    D L   +E     V EP
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAE--VGEP 633



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 183/423 (43%), Gaps = 56/423 (13%)

Query: 9   NKMIS-GCISFLRRYNS-------SEPSTEALDAAKSISKIMLSSPKV----VLDTALDQ 56
           N+M+  GC+  +  +N+            EALD A+ ++ +   SP V    +L  AL +
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT-VKGVSPDVYTFNILINALCK 403

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
            G    P +   + E+ +N+G                      Y+++I++L  + +    
Sbjct: 404 VG---DPHLALRLFEEMKNSGCTP---------------DEVTYNTLIDNLCSLGKLGKA 445

Query: 117 WDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            DL+  M  T    +  T+  I+    +  ++EEA   F+ M   G+++N   FN L+  
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK K +  A  + + M  +   P++ TY+ +L  + K  ++ +A +I   M   G   D
Sbjct: 506 LCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTYG +++ LCKAGR   AL +++ M     RPT   Y+ ++ +    N I DA+  F 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 295 EMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           EM + G   D   Y  +    C+     K  +  + +M  KG  P   +  ++  GL+  
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 354 GETD---EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           G  D    A  +    + L E+D                      +  Y+K+++F  ++ 
Sbjct: 686 GMDDYFIRAIEIIMEKVDLRESDVSA-------------------IRGYLKIRKFYDALA 726

Query: 411 TFS 413
           TF 
Sbjct: 727 TFG 729



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 161/395 (40%), Gaps = 38/395 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIM 138
           A      A  + ++      Y  +I  L  +    +M  LV  MR +   + +      +
Sbjct: 57  ALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL 116

Query: 139 RKYARVQKVEEAV-YTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
             Y   Q  ++AV    N +Q  +G+  +   +N LL+ L +   ++             
Sbjct: 117 DSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMK------------- 163

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                    LLE             ++ EM   G  PD+VT+  ++  LC+A +V  A+ 
Sbjct: 164 ---------LLE------------SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVL 202

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++ M S    P    ++ L+  +  E  IE A+     M + G  A     N LI  +C
Sbjct: 203 MLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYC 262

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADAD 375
           K  + ++    ++   + G  P+  T N  +NGL        A +V   M++   + D  
Sbjct: 263 KLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY +++   C+ G+LE+A  +   M  +  +P + TF+ LI  LC    + ++  L   +
Sbjct: 323 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             KG+ P   TF  L   L K G   +   L E+M
Sbjct: 383 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM 417


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 183/360 (50%), Gaps = 14/360 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  I+    ++ +   A   F  M + G   ++  ++ ++ +LCK + V +A +IF
Sbjct: 9   DVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIF 68

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK + I P+  TY+ L++G         A  +  EM+     P+IVT+ +++++ CK 
Sbjct: 69  SYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKE 128

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V EA G++K+M      P    YS L++ Y ++  + +A   F  M   G   DV  Y
Sbjct: 129 GNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSY 188

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  +CKA +     ++  +M  +G+ P+  + N +++GL   G   EA+ +F+ M+ 
Sbjct: 189 NILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLT 248

Query: 369 LCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TY++++  FC+ G L KAF++++ M+     P+M  +++LI+ +C    + +
Sbjct: 249 NGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKE 308

Query: 428 SCVLLEDMIEKGIRPSGETF---------GKLR-KLLIKEGREDVL--KFLQEKMNLLVK 475
           +  L  ++  +G++P+ + +           LR   LI    ED    +  Q + NLLVK
Sbjct: 309 ARKLFSELFVQGLQPNMKHWKLFEIWKRMAALRMNFLIMLSSEDFFSTRMNQGQCNLLVK 368



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 163/328 (49%), Gaps = 3/328 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
           + Y+  V  Y ++I  L KI +      L   M       +V T+  I+    + ++V E
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 63

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLE 208
           A+  F+ M+  G++ N+  +N L+  LC     R+A  + +  M    +P+  T+S+L+ 
Sbjct: 64  ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 123

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            + K+ N+  AR + + M + G  P++VTY  +++       V EA  +   M +  C+P
Sbjct: 124 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKP 183

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             F Y++L++ Y    RI +A   F EM   G+  D+  YN LI   C+  + +  + + 
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 243

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQG 387
           K+M + G  P+  T +I+L+G   +G   +A+R+FR M     + +   Y ++I   C+ 
Sbjct: 244 KNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKS 303

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             L++A K++  + ++   P+M  + + 
Sbjct: 304 RNLKEARKLFSELFVQGLQPNMKHWKLF 331



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 133/262 (50%), Gaps = 1/262 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  TY+ ++ G  K      A  +F++M + GC PD+VTY  ++D LCK  RV+EAL I
Sbjct: 8   PDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M +    P  F Y+ L+      +R  +A     EM    I+ ++  ++ LI  FCK
Sbjct: 68  FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 127

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
                    VLK M   GV PN  T + ++NG   + E  EA ++F  MI K C+ D  +
Sbjct: 128 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFS 187

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y ++I  +C+   + +A +++  M  +   P + +++ LI+GLC  G + ++  L ++M+
Sbjct: 188 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 247

Query: 437 EKGIRPSGETFGKLRKLLIKEG 458
             G  P   T+  L     K+G
Sbjct: 248 TNGNLPDLCTYSILLDGFCKQG 269



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 133/255 (52%), Gaps = 2/255 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K +    ++  Y+S+I+ L    +++    ++N M +  ++ N+ TF +++  + +   V
Sbjct: 72  KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 131

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA      M + GV  N+  ++ L++       V +A+++FD M  +   PD  +Y+IL
Sbjct: 132 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNIL 191

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A+++F EM+  G  PDIV+Y  ++D LC+ GR+ EA  + K+M +   
Sbjct: 192 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 251

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    YS+L+  +  +  +  A   F  M+   +  ++ MYN LI A CK+   K   +
Sbjct: 252 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARK 311

Query: 327 VLKDMNSKGVAPNSR 341
           +  ++  +G+ PN +
Sbjct: 312 LFSELFVQGLQPNMK 326



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV  G  PD+ TY  +++ LCK G    A G+ K M    C+P    YS ++ +   + R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           + +A+D F  M+  GI  ++  YN+LI   C  ++++    +L +M S  + PN  T ++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++N     G   EA  V + M ++  E +  TY+ ++  +    E+ +A K++  M  K 
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----E 460
             P + ++++LING C    + ++  L  +MI +G+ P   ++  L   L + GR     
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 461 DVLKFLQEKMNL 472
           D+ K +    NL
Sbjct: 241 DLFKNMLTNGNL 252



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 1/124 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
            Q     + +Y+++I+ L ++ + +   DL   M T   L ++ T+ I++  + +   + 
Sbjct: 213 HQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLA 272

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
           +A   F  MQ   +  N+  +N L+ A+CKS+N+++A+++F  +  + +  +  +  L E
Sbjct: 273 KAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKLFE 332

Query: 209 GWGK 212
            W +
Sbjct: 333 IWKR 336


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I+ L K  Q    + L   M       N   +  ++R +    + E+    F  + 
Sbjct: 195 YCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELI 254

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           + G   +L   N  +  + K+  V K + IF+ ++   F+PD ++YSIL+ G  K     
Sbjct: 255 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 314

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
               IF  M   G   D   Y  +VD  CK+G+V +A  I++ M     +PT   Y  +V
Sbjct: 315 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIV 374

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E +  GI  +V +Y++LI  F K  +    Y +L++M  KG+ 
Sbjct: 375 DGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 434

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M ++ C  +  TY+++I   C+  +  KAF  
Sbjct: 435 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 494

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           W+ M+ +  +P++ T++ +I+GL   G ++D+  L E     G  P   +F  L
Sbjct: 495 WQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 548



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 186/375 (49%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       +++  + L+  +R +  + +V +F  I+    + +KV+EA+  F VM
Sbjct: 55  AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM 114

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNL 216
           +K     N + +N ++  LC    V +A  I D M+     P+  T +I+++   K   L
Sbjct: 115 KK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKL 173

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A +IF      GCNPD VTY  ++D L K G+VDEA  + + M          +Y+ L
Sbjct: 174 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSL 233

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  + +  R ED    F E+ + G   D+ + N  +    KA + +    + +D+ S G 
Sbjct: 234 IRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF 293

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFK 395
            P+ R+ +I+++GL   G+  E   +F  M +   A DA  Y  ++  FC+ G++ KA++
Sbjct: 294 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 353

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK K   P++ T+  +++GL     + ++ +L E+   KGI  +   +  L     
Sbjct: 354 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 413

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E+M
Sbjct: 414 KVGRIDEAYLILEEM 428



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 184/435 (42%), Gaps = 72/435 (16%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           SV +++S++  L K R+      L   M+     N  T+ II+       +VEEA    +
Sbjct: 87  SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 146

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M+   +  NL   N ++  LCK++ + +A +IF+    R   PD  TY  L++G GK  
Sbjct: 147 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 206

Query: 215 NLPRA-----------------------------------REIFREMVDTGCNPDIVTYG 239
            +  A                                    +IF+E++  GC PD+    
Sbjct: 207 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLN 266

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +D + KAG V++   I + + S    P    YS+L+H      +  +  + F  M++ 
Sbjct: 267 TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ 326

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D   YNA++  FCK+ K    Y +L++M  K V P   T   I++GL      DEA
Sbjct: 327 GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEA 386

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV---------------------- 396
           Y +F     K  E +   Y+ +I  F + G +++A+ +                      
Sbjct: 387 YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 446

Query: 397 -------------WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                        ++ MK  +  P+ +T+S+LINGLC     + + V  +DM ++G+ P+
Sbjct: 447 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 506

Query: 444 GETFGKLRKLLIKEG 458
             T+  +   L K G
Sbjct: 507 VVTYTTMISGLAKVG 521



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 154/308 (50%), Gaps = 3/308 (0%)

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGK 212
           F+ ++  G+  +  ++  ++  LCK+  + +A+E+F  M+ +R +P +  Y+ ++ G+G 
Sbjct: 6   FHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGS 65

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                 A ++   + + GC P +V++  ++  L K  +VDEAL + + M      P S  
Sbjct: 66  AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSST 124

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++++    +  R+E+A     EME   +  ++   N ++   CKA K +  Y++ +  +
Sbjct: 125 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 184

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELE 391
            +G  P+  T   +++GL  +G+ DEAYR+F +M+     A+   YT +I+ F   G  E
Sbjct: 185 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 244

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
              K++K +  +   P +   +  ++ +   G V    ++ ED+   G  P   ++  L 
Sbjct: 245 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 304

Query: 452 KLLIKEGR 459
             L K G+
Sbjct: 305 HGLTKAGQ 312



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 3/252 (1%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A + F E+   G  PD V+Y  M+ VLCKAGR+ EA  +   M++    P ++ Y+ ++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            YG   R EDA      + + G +  V  +N+++    K  K      + + M  K   P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEP 120

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVW 397
           NS T NII++ L   G  +EAYR+   M       +  T  +M+   C+  +LE+A+K++
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-RKLLIK 456
           +    +   P   T+  LI+GL  KG V ++  L E M++ G   +   +  L R   I 
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 457 EGREDVLKFLQE 468
             +ED  K  +E
Sbjct: 241 GRKEDGHKIFKE 252



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           VR+Y  +I  L K  Q +   ++ +AM+ +   L+   +  ++  + +  KV +A     
Sbjct: 297 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 356

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M++  V   +A +  ++  L K   + +A  +F+  K + I  +   YS L++G+GK  
Sbjct: 357 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 416

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I  EM+  G  P++ T+  ++D L KA  ++EAL   +SM    C P ++ YS
Sbjct: 417 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 476

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L++      +   A   + +M+K G++ +V  Y  +I    K     + Y + +   + 
Sbjct: 477 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRV 362
           G  P++ + N ++ G+       EAY+ 
Sbjct: 537 GGIPDAASFNALIEGMSNANRAMEAYQA 564



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 2/243 (0%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           A KQQ +    RAY+++++   K  +    ++++  M+ K +   V T+  I+   A++ 
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 381

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYS 204
           +++EA   F   +  G+  N+  ++ L+    K   + +A  I  + MK    P+  T++
Sbjct: 382 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 441

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            LL+   K   +  A   F+ M +  C P+  TY I+++ LC+  + ++A    + M   
Sbjct: 442 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 501

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ ++        I DA   F   + NG + D A +NALI     AN+    
Sbjct: 502 GLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEA 561

Query: 325 YRV 327
           Y+ 
Sbjct: 562 YQA 564


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 176/346 (50%), Gaps = 18/346 (5%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ +F I+++ +    K+  A+ TF  + K G    L  FN LL  LC    V +A ++F
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             M     P+  T++ L+ G  ++  +  A  +   MV+ G  P+ +TYG +VD +CK G
Sbjct: 74  HQMCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 130

Query: 250 RVDEALGIVKSMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
               AL +++ M+  +  +P   IYS ++     + R  DA + F+EM+  GI  D+  Y
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTY 190

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + +I  FC + K+    R+L++M  + ++P+  T + ++N L+  G+ + A  + + MI 
Sbjct: 191 SCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMIS 250

Query: 369 --LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK-----------LKRFIPSMHTFSVL 415
             +C  +  T   ++   C  G+L+ A +++K M+                P + T+++L
Sbjct: 251 SGVC-PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNIL 309

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           I+GL ++G   ++  L E+M  +GI P   T+  +   L K+ R D
Sbjct: 310 ISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLD 355



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 158/332 (47%), Gaps = 14/332 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  +V EAV   + M + G+  N   +  ++  +CK  +   A  + 
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 139

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++     PD   YS +++G  KD     A+ +F EM D G  PDIVTY  M++  C 
Sbjct: 140 RKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCS 199

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +G+  EA  +++ M      P    +S L++    E  +  A D   EM  +G+  +V  
Sbjct: 200 SGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVT 259

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNS-----------KGVAPNSRTCNIILNGLIGRGET 356
            N L+   C + K K+   + K M              GV P+ +T NI+++GLI  G+ 
Sbjct: 260 CNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKF 319

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA  ++  M  +    D  TY+ MI   C+   L++A +++  M  K F P++ TF+ L
Sbjct: 320 LEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTL 379

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           I G C  G+V D   L  +M  +GI  +  T+
Sbjct: 380 ITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 13/283 (4%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y  MI       ++     L+  M  +++  +V TF  ++    +   +  A     
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------PDSKTY 203
            M   GV  N+   N LL  LC S  ++ A E+F  M+   +            PD +TY
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTY 306

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +IL+ G   +     A E++ EM   G  PD VTY  M++ LCK  R+DEA  +  SM S
Sbjct: 307 NILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGS 366

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    ++ L+  Y     ++D ++ F EM + GI+A+   Y  LI  F K      
Sbjct: 367 KSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNING 426

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
              + ++M S GV P++ T   +L GL  + E   A  +   +
Sbjct: 427 SLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 6/239 (2%)

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI ++ I++   C   ++  AL     +      PT   ++ L+H   VE+R+ +A+D F
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M K     +V  +  L+   C+  +      +L  M   G+ PN  T   I++G+   
Sbjct: 74  HQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 354 GETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           G+T  A  + R+M +L     D   Y+ +I    + G    A  ++  M+ K   P + T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +S +ING C  G  S++  LL++M+ + I P   TF  L   L+KEG  +  + L ++M
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 8/275 (2%)

Query: 197 IP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           IP D  +++IL++ +     LP A   F ++   G +P +VT+  ++  LC   RV EAL
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M    C+P    ++ L++    E R+ +AV     M ++G+  +   Y  ++   
Sbjct: 71  DLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126

Query: 316 CKANKFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
           CK     +   +L+ M     + P+    + I++GL   G   +A  +F  M  K    D
Sbjct: 127 CKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPD 186

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY+ MI  FC  G+  +A ++ + M +++  P + TFS LIN L  +G ++ +  LL+
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
           +MI  G+ P+  T   L   L   G+ +D L+  +
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 151/339 (44%), Gaps = 16/339 (4%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A    +  E+  + +  V  Y ++I+ L K  ++    +L   M+ K +  ++ T+  ++
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
             +    K  EA      M    ++ ++  F+GL++AL K  ++  AQ++   M    + 
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREM------VDT-----GCNPDIVTYGIMVDVLC 246
           P+  T + LL+G      L  A E+F+ M      +D      G  PD+ TY I++  L 
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G+  EA  + + M      P +  YS +++    ++R+++A   F  M       ++ 
Sbjct: 315 NEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIV 374

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI  +CKA    +   +  +M  +G+  N+ T   ++ G    G  + +  +F+ M
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434

Query: 367 IKLCEADADTYTM--MIKMFCQGGELEKAFKVWKYMKLK 403
           I       DT T+  M+       EL++A  + + +++ 
Sbjct: 435 IS-SGVYPDTITIRNMLTGLWSKEELKRALAMLEELQMS 472



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 10/236 (4%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L++A+ + + M+SS   P VV  +T LD  G+  S ++ +D LE F+ A   +       
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLD--GLCDSGKL-KDALEMFK-AMQKSMMDIDAT 293

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQK 146
                 E  V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++    +  +
Sbjct: 294 HAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSR 353

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSI 205
           ++EA   F+ M     + N+  FN L++  CK+  V    E+F  M  R  + ++ TY  
Sbjct: 354 LDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYIT 413

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           L+ G+ K  N+  + +IF+EM+ +G  PD +T   M+  L     +  AL +++ +
Sbjct: 414 LIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 203/417 (48%), Gaps = 23/417 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A   F    +Q+ + H+   Y +++  LAK +++Q +  +++ M  +    +   F  +M
Sbjct: 146 ALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLM 205

Query: 139 RKYARVQKVEEAVYTFNV----------MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           + ++++   E  V  F+           ++      NL   +   S   K+ ++  A E+
Sbjct: 206 KHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLLVESNQSSITAKNGDIDSAFEV 265

Query: 189 FDCMKDRFI--PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVL 245
            + MK   +  P+  TYS L+ G      L  A E+F EMV      PD +TY  +++  
Sbjct: 266 VEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGF 325

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C   +VD AL I++ M    C P  F YS L++ +  E R+E+A + F EM+  G+  D 
Sbjct: 326 CHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDT 385

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y  LI  FC+A +      +LKDM       ++ T N+IL GL   G  +EA  +  R
Sbjct: 386 VGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLER 445

Query: 366 M----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +    + L +A   +Y +++   C+ GEL+KA ++   M  +  +P   T + L+  LC+
Sbjct: 446 LPYEGVYLNKA---SYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCE 502

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
            G V D+ + L  ++E G +P   ++  L +L+ +E +  +L   +   +L+++EP+
Sbjct: 503 AGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERK--LLPAFELLDDLVIQEPI 557



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 121/263 (46%), Gaps = 16/263 (6%)

Query: 213 DPNLPRAREIFREMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           DP   RA EIF  + +  G + +  TY  ++  L K+ +      ++  M    C+    
Sbjct: 142 DPQ--RALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEG 199

Query: 272 IYSVLVHTYGVENRIEDAVDTF-----LEMEKNGILADVAMYNALIGA-----FCKANKF 321
           I+  L+  +   +  E  V+ F     +  EK  + A     N L+ +       K    
Sbjct: 200 IFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLLVESNQSSITAKNGDI 259

Query: 322 KNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYT 378
            + + V+++M    V+ PN  T + ++NGL G G   EA  +F  M+   +   DA TY 
Sbjct: 260 DSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYN 319

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I  FC G ++++A K+ ++MK     P++  +S L+NG C +G + ++  + ++M   
Sbjct: 320 ALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSL 379

Query: 439 GIRPSGETFGKLRKLLIKEGRED 461
           G++P    +  L     + GR D
Sbjct: 380 GLKPDTVGYTTLINFFCRAGRVD 402



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 21/300 (7%)

Query: 178 KSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           +  + ++A EIF+ + ++  F  ++ TY+ +L    K         +  +M    C    
Sbjct: 139 RETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCK--- 195

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVC----RPTSFIYSVLVHTYGVENR------ 285
              GI ++++    ++     +V+  D+       +P+    S  ++     N+      
Sbjct: 196 FHEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLLVESNQSSITAK 255

Query: 286 ---IEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNS 340
              I+ A +   EM+K+ +   ++  Y+ LI   C + + K    + ++M SK  + P++
Sbjct: 256 NGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDA 315

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N ++NG     + D A ++   M K  C  +   Y+ ++  FC+ G LE+A +V+  
Sbjct: 316 LTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDE 375

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           MK     P    ++ LIN  C  G V ++  LL+DM E   R    TF  +   L +EGR
Sbjct: 376 MKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGR 435


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I+ L K  Q    + L   M       N   +  ++R +    + E+    F  + 
Sbjct: 327 YCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELI 386

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           + G   +L   N  +  + K+  V K + IF+ ++   F+PD ++YSIL+ G  K     
Sbjct: 387 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 446

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
               IF  M   G   D   Y  +VD  CK+G+V +A  I++ M     +PT   Y  +V
Sbjct: 447 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIV 506

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E +  GI  +V +Y++LI  F K  +    Y +L++M  KG+ 
Sbjct: 507 DGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 566

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M ++ C  +  TY+++I   C+  +  KAF  
Sbjct: 567 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 626

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           W+ M+ +  +P++ T++ +I+GL   G ++D+  L E     G  P   +F  L
Sbjct: 627 WQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 680



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 190/387 (49%), Gaps = 7/387 (1%)

Query: 90  QQNYEHSVR---AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           Q   E SV    AY++MI       +++  + L+  +R +  + +V +F  I+    + +
Sbjct: 175 QMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 234

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYS 204
           KV+EA+  F VM+K     N + +N ++  LC    V +A  I D M+     P+  T +
Sbjct: 235 KVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+++   K   L  A +IF      GCNPD VTY  ++D L K G+VDEA  + + M   
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                  +Y+ L+  + +  R ED    F E+ + G   D+ + N  +    KA + +  
Sbjct: 354 GHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 413

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKM 383
             + +D+ S G  P+ R+ +I+++GL   G+  E   +F  M +   A DA  Y  ++  
Sbjct: 414 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 473

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC+ G++ KA+++ + MK K   P++ T+  +++GL     + ++ +L E+   KGI  +
Sbjct: 474 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 533

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
              +  L     K GR D    + E+M
Sbjct: 534 VVLYSSLIDGFGKVGRIDEAYLILEEM 560



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 183/435 (42%), Gaps = 72/435 (16%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           SV +++S++  L K R+      L   M+     N  T+ II+       +VEEA    +
Sbjct: 219 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 278

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M+   +  NL   N ++  LCK++ + +A +IF+    R   PD  TY  L++G GK  
Sbjct: 279 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 338

Query: 215 NLPRAREIFREMVDTG-----------------------------------CNPDIVTYG 239
            +  A  +F +M+D G                                   C PD+    
Sbjct: 339 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLN 398

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +D + KAG V++   I + + S    P    YS+L+H      +  +  + F  M++ 
Sbjct: 399 TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ 458

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D   YNA++  FCK+ K    Y +L++M  K V P   T   I++GL      DEA
Sbjct: 459 GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEA 518

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV---------------------- 396
           Y +F     K  E +   Y+ +I  F + G +++A+ +                      
Sbjct: 519 YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 578

Query: 397 -------------WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                        ++ MK  +  P+ +T+S+LINGLC     + + V  +DM ++G+ P+
Sbjct: 579 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 638

Query: 444 GETFGKLRKLLIKEG 458
             T+  +   L K G
Sbjct: 639 VVTYTTMISGLAKVG 653



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 162/329 (49%), Gaps = 1/329 (0%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSK 201
           R +++++AV    VM++       +A+  L+ AL +++   +A E+   M++  +     
Sbjct: 22  RARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVH 81

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            ++ L+    ++  +  A  +  E+  +   PDIV Y + +D   KAG VD A      +
Sbjct: 82  LFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHEL 141

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +   +P    Y+ ++       R+ +A + F +ME    +     YN +I  +  A +F
Sbjct: 142 KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRF 201

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381
           ++ Y++L+ +  +G  P+  + N IL  L  + + DEA  +F  M K  E ++ TY ++I
Sbjct: 202 EDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIII 261

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            M C GG +E+A+++   M+     P++ T +++++ LC    + ++  + E   ++G  
Sbjct: 262 DMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCN 321

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           P   T+  L   L K+G+ D    L EKM
Sbjct: 322 PDCVTYCSLIDGLGKKGQVDEAYRLFEKM 350



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           VR+Y  +I  L K  Q +   ++ +AM+ +   L+   +  ++  + +  KV +A     
Sbjct: 429 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 488

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M++  V   +A +  ++  L K   + +A  +F+  K + I  +   YS L++G+GK  
Sbjct: 489 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 548

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I  EM+  G  P++ T+  ++D L KA  ++EAL   +SM    C P ++ YS
Sbjct: 549 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 608

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L++      +   A   + +M+K G++ +V  Y  +I    K     + Y + +   + 
Sbjct: 609 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRV 362
           G  P++ + N ++ G+       EAY+ 
Sbjct: 669 GGIPDAASFNALIEGMSNANRAMEAYQT 696



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 120/243 (49%), Gaps = 3/243 (1%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIR 111
           A+ Q G  +       V++ F  +G +   +    E K++  + +V  Y ++++ LAKI 
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 513

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +    + L    ++K + LNV  +  ++  + +V +++EA      M K G+T N+  +N
Sbjct: 514 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 573

Query: 171 GLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            LL AL K++ + +A   F  MK+ +  P++ TYSIL+ G  +     +A   +++M   
Sbjct: 574 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 633

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  P++VTY  M+  L K G + +A  + +   +    P +  ++ L+      NR  +A
Sbjct: 634 GLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEA 693

Query: 290 VDT 292
             T
Sbjct: 694 YQT 696



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 1/222 (0%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +   L +A R+D+A+  V  M     RP    Y+VL+       R E A++   +M++ G
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 75

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
               V ++  L+ A  +  +  +   ++ ++    + P+    N+ ++     G  D A 
Sbjct: 76  YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAC 135

Query: 361 RVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           + F  +  +  + D  +YT MI + C+ G L +A +++  M+ +R +P  + ++ +I G 
Sbjct: 136 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 195

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              G   D+  LLE + E+G  PS  +F  +   L K+ + D
Sbjct: 196 GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVD 237


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 177/363 (48%), Gaps = 5/363 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   D++  MR +  +  N  T+  ++  + +V +V+EAV  F+ M
Sbjct: 522 YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM 581

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V      +N L+   C    +  A    D M +R +  +  TY++L+     D  
Sbjct: 582 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 641

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E+  EM   G  PD+ TY I+++  CK G V +AL I ++M     R T   Y+ 
Sbjct: 642 GTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTA 701

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++    + ++++    F E  + GI  D+ +YNALI +   +      + ++ +M  K 
Sbjct: 702 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 761

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           +AP+  T N ++ GL   G  DEA ++   M  +  + D  TY  +I  +   G+++ A 
Sbjct: 762 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDAL 821

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M  K F P++ T++ LI GLC  G   D+  ++++M+E GI P   T+  L + L
Sbjct: 822 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881

Query: 455 IKE 457
             E
Sbjct: 882 TTE 884



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 173/405 (42%), Gaps = 46/405 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           S  + H ++ +L     + +  D+    R +  L   TF I++R      K   A+    
Sbjct: 456 STASLHPLLSALPSAPAFALFADM---FRLRLPLCTTTFNIMLRHLCSAGKPARALELLR 512

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKD 213
            M +     N   +N +++  C    V+ A +I   M++R    P+  TY  ++ GW K 
Sbjct: 513 QMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 568

Query: 214 PNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVD-------------------- 252
             +  A ++F EM+  G   P+ V Y  ++   C  G++D                    
Sbjct: 569 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 253 ---------------EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
                          EA  +V+ M      P  F Y++L++ +  E  ++ A++ F  M 
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 688

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G+ A V  Y ALI A  K  + +   ++  +   +G+ P+    N ++N     G  D
Sbjct: 689 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNID 748

Query: 358 EAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A+ +   M K   A  D TY  +++  C  G +++A K+   M  +   P + T++ LI
Sbjct: 749 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 808

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +G   KG V D+  +  +M+ KG  P+  T+  L + L K G+ D
Sbjct: 809 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 853



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKD 194
           +++   A V+    ++  ++ M+   +  + A+ + LLSAL  +     A  +F D  + 
Sbjct: 427 LLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRL 482

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R    + T++I+L          RA E+ R+M      P+ VTY  ++   C  GRV  A
Sbjct: 483 RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAA 538

Query: 255 LGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALI 312
           L I++ M +     P  + Y  ++  +    R+++AV  F EM   G +  +  MYNALI
Sbjct: 539 LDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 598

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
           G +C   K          M  +GVA    T N++++ L   G   EAY +   M  K   
Sbjct: 599 GGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLA 658

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY ++I   C+ G ++KA ++++ M  +    ++ T++ LI  L  KG V ++  L
Sbjct: 659 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 718

Query: 432 LEDMIEKGIRP 442
            ++ + +GIRP
Sbjct: 719 FDEAVRRGIRP 729



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 2/262 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    +    ++LV  M  K +  +V T+ I++  + +   V++A+  F
Sbjct: 625 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 684

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + GV   +  +  L+ AL K   V++  ++FD    R I PD   Y+ L+      
Sbjct: 685 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 744

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ RA EI  EM      PD VTY  ++  LC  GRVDEA  ++  M     +P    Y
Sbjct: 745 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 804

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y ++  ++DA+    EM   G    +  YNALI   CK  +  +   ++K+M  
Sbjct: 805 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 864

Query: 334 KGVAPNSRTCNIILNGLIGRGE 355
            G+ P+  T   ++ GL    E
Sbjct: 865 NGITPDDSTYISLIEGLTTEDE 886


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 210/447 (46%), Gaps = 5/447 (1%)

Query: 29  TEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
           T A  AA S   + +      ++ AL++    +S EIV DV+ + R    L F FF W  
Sbjct: 30  TTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMREQRRP-ELGFRFFIWTT 88

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +++++   V  ++ +I+ LAK   +   W ++  ++   + +   TF +++  YA+    
Sbjct: 89  RRRSFRSWV-THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMA 147

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
           E+AV +F  M+ +G   ++  +N +L  + + +    A  +++ M K  + P+  T+ IL
Sbjct: 148 EKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVIL 207

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L G  K+     A ++F EM   G  P+ + Y I++  LC+A R D+   ++ +M  + C
Sbjct: 208 LNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGC 267

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P S   + L+  +    +I++A       EK G +  +  Y++LI    +A ++  V  
Sbjct: 268 CPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQE 327

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
             + M   G+ P+     I++ G    G  D A  +   M +     D   Y  +IK FC
Sbjct: 328 WCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFC 387

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G L+KA  +   +      P+  T+++LI G+C  G++ ++  +   M   G  PS  
Sbjct: 388 DVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIM 447

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNL 472
           TF  L   L K G  +  + L  KM +
Sbjct: 448 TFNALIDGLCKAGELEEARHLFYKMEI 474



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 196/418 (46%), Gaps = 20/418 (4%)

Query: 69  VLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RT 125
           +L+ F   G +  AF   +  EK+  Y   ++ Y S+I+ L + ++Y  + +    M + 
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKE-GYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKA 335

Query: 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
               +V  + I++R +  V  V+ A+   N M + G++ +   +N L+   C    + KA
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395

Query: 186 QEI-FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           + +  +  K+   P S TY+IL+ G  ++  L  AR+IF +M + GC+P I+T+  ++D 
Sbjct: 396 RSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDG 455

Query: 245 LCKAGRVDEALGIVKSMD-----STVCRPTSFIYSVLVHTYGVE--NRIEDAVDTFLEME 297
           LCKAG ++EA  +   M+     S   R +     V+    G    +R EDA     +M 
Sbjct: 456 LCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMV 515

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRV-LKDMNSKGVAPNSRTCNIIL-NGLIGRGE 355
           KNG     A+Y  L+   C+  K    + + LK + S    P+     + L      +GE
Sbjct: 516 KNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRS---LPSQEDETLKLAEEHFEKGE 572

Query: 356 TDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            ++A R    M  KL   +   YT+ +   CQ    E+A K++  +K  +   +  +  +
Sbjct: 573 LEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVM 632

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK-LRKLLIKEGREDVLKFLQEKMN 471
           LINGLC  G +  +  +    +EKG         + LR L++++  +  L  L  +MN
Sbjct: 633 LINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLN-RMN 689



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 167/420 (39%), Gaps = 48/420 (11%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQ 112
           L  S I++ P     ++  +  +G        + + K    +  V  Y+S++  + +   
Sbjct: 122 LKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEV 181

Query: 113 YQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           + +   + N M +     N  TF I++    +  K ++A+  F+ M + G+  N   +  
Sbjct: 182 FLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTI 241

Query: 172 LLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRA----------- 219
           +LS LC++K       + + MK     PDS T + LL+G+ K   +  A           
Sbjct: 242 ILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 220 ------------------------REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
                                   +E  R+M   G  PD+V Y I++   C+ G VD AL
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYAL 361

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M      P ++ Y+ L+  +     ++ A    LE+ KN        Y  LI   
Sbjct: 362 NMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGM 421

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM--------- 366
           C+        ++   M + G +P+  T N +++GL   GE +EA  +F +M         
Sbjct: 422 CRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLF 481

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           ++L +  AD        F +    E AF+V   M      PS   +  L+   C KG +S
Sbjct: 482 LRLSQG-ADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLS 540


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 171/362 (47%), Gaps = 3/362 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKV 147
           K + +   +  Y+ MI SL   R+  +   +++ +     M  V T+ I++        +
Sbjct: 164 KARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGI 223

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA+     M   G+  ++  +N ++  +CK   V +A E+   +  +   PD  +Y+IL
Sbjct: 224 NEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNIL 283

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L  +          ++  EM   GC P+ VTY I++  LC+ GR+DEA+ ++K M     
Sbjct: 284 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKEL 343

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P ++ Y  L+     E R++ A+     M  NG L D+  YN ++ A CK         
Sbjct: 344 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +   +   G  PN  + N +++ L   G+   A  +   MI K  + D  TY  +I   C
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLC 463

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G +E+A  +   M+   F P++ ++++++ GLC    + D+  +  +MIEKG RP+  
Sbjct: 464 RDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNET 523

Query: 446 TF 447
           T+
Sbjct: 524 TY 525



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 1/326 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++ +  +  K  E++Y    +   G T ++     L+      KN+ KA  + + ++   
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD   Y+ ++ G+ K   +  A ++   M   G  PDIVTY IM+  LC   ++  AL 
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  +    C PT   Y++L+    VE  I +A+    EM   G+L D+  YNA+I   C
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K    +    ++  + SKG  P+  + NI+L   + +G+ DE  ++   M  + CE +  
Sbjct: 254 KEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 313

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+++I   C+ G +++A  V K M  K   P  +++  LI+ LC +G +  +  +++ M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           I  G  P    +  +   L K G  +
Sbjct: 374 ISNGCLPDIVNYNTILAALCKNGNAN 399



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 152/316 (48%), Gaps = 3/316 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           +++ +   + +E+A     +++ +    ++ A+N ++S  CK   +  A ++ + MK R 
Sbjct: 109 LIKGFFNFKNIEKASRVMEILESH-TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARG 167

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F+PD  TY+I++        L  A ++  +++   C P ++TY I+++     G ++EA+
Sbjct: 168 FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAM 227

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M +    P  + Y+ ++     E  +E A +    +   G   DV  YN L+ AF
Sbjct: 228 KLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAF 287

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
               K+    +++ +M S+G  PN  T +I+++ L   G  DEA  V + MI K    D 
Sbjct: 288 LNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDT 347

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +Y  +I   C+ G L+ A  +  YM     +P +  ++ ++  LC  G  + +  +   
Sbjct: 348 YSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK 407

Query: 435 MIEKGIRPSGETFGKL 450
           +   G  P+  ++  +
Sbjct: 408 LRGMGCPPNVSSYNTM 423



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 1/256 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++    R  +++EA+    VM +  +T +  +++ L+SALCK   +  A  I 
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  +PD   Y+ +L    K+ N  +A EIF ++   GC P++ +Y  M+  L   
Sbjct: 371 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 430

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G    ALG+V +M S    P    Y+ L+     +  +E+A+    +ME++G    V  Y
Sbjct: 431 GDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISY 490

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK  +  +   +  +M  KG  PN  T  +++ G+   G   EA  +   +  
Sbjct: 491 NIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 550

Query: 369 LCEADADTYTMMIKMF 384
                 D++  + K F
Sbjct: 551 RDVISQDSFKRLNKTF 566



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           L+   CKA KF      L+ + +KG  P+   C  ++ G       ++A RV   +    
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D   Y  +I  FC+   +E A +V   MK + F+P + T++++I  LC++  +  +  
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           +L+ ++     P+  T+  L +  I EG   + +K L+E +
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEML 234


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 210/447 (46%), Gaps = 5/447 (1%)

Query: 29  TEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE 88
           T A  AA S   + +      ++ AL++    +S EIV DV+ + R    L F FF W  
Sbjct: 30  TTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMREQRRP-ELGFRFFIWTT 88

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +++++   V  ++ +I+ LAK   +   W ++  ++   + +   TF +++  YA+    
Sbjct: 89  RRRSFRSWV-THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMA 147

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
           E+AV +F  M+ +G   ++  +N +L  + + +    A  +++ M K  + P+  T+ IL
Sbjct: 148 EKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVIL 207

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L G  K+     A ++F EM   G  P+ + Y I++  LC+A R D+   ++ +M  + C
Sbjct: 208 LNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGC 267

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P S   + L+  +    +I++A       EK G +  +  Y++LI    +A ++  V  
Sbjct: 268 CPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQE 327

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
             + M   G+ P+     I++ G    G  D A  +   M +     D   Y  +IK FC
Sbjct: 328 WCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFC 387

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G L+KA  +   +      P+  T+++LI G+C  G++ ++  +   M   G  PS  
Sbjct: 388 DVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIM 447

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMNL 472
           TF  L   L K G  +  + L  KM +
Sbjct: 448 TFNALIDGLCKAGELEEARHLFYKMEI 474



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 191/460 (41%), Gaps = 52/460 (11%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQ 112
           L  S I++ P     ++  +  +G        + + K    +  V  Y+S++  + +   
Sbjct: 122 LKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEV 181

Query: 113 YQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           + +   + N M +     N  TF I++    +  K ++A+  F+ M + G+  N   +  
Sbjct: 182 FLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTI 241

Query: 172 LLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRA----------- 219
           +LS LC++K       + + MK     PDS T + LL+G+ K   +  A           
Sbjct: 242 ILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 220 ------------------------REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
                                   +E  R+M   G  PD+V Y I++   C+ G VD AL
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYAL 361

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M      P ++ Y+ L+  +     ++ A    LE+ KN        Y  LI   
Sbjct: 362 NMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGM 421

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM--------- 366
           C+        ++   M + G +P+  T N +++GL   GE +EA  +F +M         
Sbjct: 422 CRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLF 481

Query: 367 IKLCEA-----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           ++L +      D  +   M++  C+ G + KA+K+   +     +P + T++VLING C 
Sbjct: 482 LRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCK 541

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              ++ +  L  ++  KG  P   T+G L     +  RE+
Sbjct: 542 AKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREE 581



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 204/491 (41%), Gaps = 90/491 (18%)

Query: 69  VLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RT 125
           +L+ F   G +  AF   +  EK+  Y   ++ Y S+I+ L + ++Y  + +    M + 
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKE-GYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKA 335

Query: 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
               +V  + I++R +  V  V+ A+   N M + G++ +   +N L+   C    + KA
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395

Query: 186 QEI-FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           + +  +  K+   P S TY+IL+ G  ++  L  AR+IF +M + GC+P I+T+  ++D 
Sbjct: 396 RSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDG 455

Query: 245 LCKAGRVDEALGI----------------------------VKSMDSTVCR--------- 267
           LCKAG ++EA  +                            +++M   +C          
Sbjct: 456 LCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYK 515

Query: 268 -----------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
                      P    Y+VL++ +     I  A   F E++  G   D   Y  LI  F 
Sbjct: 516 LLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFH 575

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILN-----GLIG------------------- 352
           + ++ ++ +RVL  M   G  P+S     ++      G +                    
Sbjct: 576 RVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDE 635

Query: 353 ----------RGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
                     +GE ++A R    M  KL   +   YT+ +   CQ    E+A K++  +K
Sbjct: 636 TLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLK 695

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK-LRKLLIKEGRE 460
             +   +  +  +LINGLC  G +  +  +    +EKG         + LR L++++  +
Sbjct: 696 ECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMK 755

Query: 461 DVLKFLQEKMN 471
             L  L  +MN
Sbjct: 756 HALDLLN-RMN 765


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 5/349 (1%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           ++++  L   R       L + M     +N  T+  ++    + + ++EA+     M+  
Sbjct: 50  NTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSR 109

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           G+       N ++  LC++  +R A  ++  M D   PD  TY+ L+ G  K   L  A 
Sbjct: 110 GMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAV 169

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++ +EMV     PD  T  ++V  LC   RVD+A  +V+ M        +  YS LV   
Sbjct: 170 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229

Query: 281 GVENRIEDAVDTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
               R+++AV   L E+ + G   D+  Y+ +I   CKA + ++   + ++M+    AP 
Sbjct: 230 CKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPT 286

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           + T N ++ G    G+ DEA R+  +M+   C  D  TYT ++  FC+ G L+ A+++++
Sbjct: 287 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQ 346

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            M   +  P + TF+ L++GLC +G + D+  LLE++  +G  P+  T+
Sbjct: 347 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 395



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 175/349 (50%), Gaps = 7/349 (2%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAV-YTFNVMQKY 160
           +++SL    +     +LV  M  + M  N  T+  ++    + ++++EAV      + + 
Sbjct: 190 VVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRR 249

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           G T ++  ++ ++  LCK+  +R A +IF+ M     P + TY+ L+ G+ +  ++  A 
Sbjct: 250 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRAGDMDEAI 307

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +  +MVD  C PD++TY  ++   CK GR+D+A  + + M +    P    ++ LV   
Sbjct: 308 RLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 367

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             E R+EDA++   E+ + G    +  YN ++  +CK+N+ +    ++ D  S+G  PN+
Sbjct: 368 CGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNT 427

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELEKAFKVW 397
            T NI++ G    G TD+A +   ++      C      Y +++   C+ G  + A + +
Sbjct: 428 VTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFY 487

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           + M  + ++P+  TF+ ++  LC       +  LLE+MI+ G  P   T
Sbjct: 488 EEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGT 536



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 170/335 (50%), Gaps = 7/335 (2%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+ +    +    A+  F+ M + G   +   +N L+  LCK++ + +A  +   MK R 
Sbjct: 52  ILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLDEAMGLLLDMKSRG 110

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P +  +++++ G  +   L  A  ++R+M D    PD +TY  +V  L KAGR+ +A+
Sbjct: 111 MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKAGRLRDAV 169

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M S    P +   +V+V +  + +R++DA +   EM   G+ A+   Y+AL+   
Sbjct: 170 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229

Query: 316 CKANKF-KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
           CK  +  + V  +L ++  +G  P+  T + +++GL   G   +A  +F  M   C   A
Sbjct: 230 CKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTA 287

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I  +C+ G++++A ++   M      P + T++ L++  C  G + D+  L + 
Sbjct: 288 ITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQ 347

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           M+   + P   TF  L   L  EGR ED L+ L+E
Sbjct: 348 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 382



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  +M  + ++ ++++A   F  M    ++ ++  F  L+  LC    +  A E+ 
Sbjct: 321 DVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELL 380

Query: 190 DCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +  R  P +  TY+ +++G+ K   + +A E+  +    G  P+ VTY I+V   C+A
Sbjct: 381 EEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRA 440

Query: 249 GRVDEALGIVKSMDST--VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           GR D+AL  +  ++S    C  +  +Y++++     + R +DAV  + EM + G +   A
Sbjct: 441 GRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAA 500

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +  ++ A CKA++ +  + +L++M   G  P   TC+ +++ 
Sbjct: 501 TFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSA 543


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 176/346 (50%), Gaps = 18/346 (5%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ +F I+++ +    K+  A+ TF  + K G    L  FN LL  LC    V +A ++F
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             M     P+  T++ L+ G  ++  +  A  +   MV+ G  P+ +TYG +VD +CK G
Sbjct: 74  HQMCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 130

Query: 250 RVDEALGIVKSMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
               AL +++ M+  +  +P   IYS ++     + R  DA + F+EM+  GI  D+  Y
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTY 190

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + +I  FC + K+    R+L++M  + ++P+  T + ++N L+  G+ + A  + + MI 
Sbjct: 191 SCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMIS 250

Query: 369 --LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK-----------LKRFIPSMHTFSVL 415
             +C  +  T   ++   C  G+L+ A +++K M+                P + T+++L
Sbjct: 251 SGVC-PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNIL 309

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           I+GL ++G   ++  L E+M  +GI P   T+  +   L K+ R D
Sbjct: 310 ISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLD 355



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 158/332 (47%), Gaps = 14/332 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV TF  +M    R  +V EAV   + M + G+  N   +  ++  +CK  +   A  + 
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 139

Query: 190 DCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++     PD   YS +++G  KD     A+ +F EM D G  PDIVTY  M++  C 
Sbjct: 140 RKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCS 199

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           +G+  EA  +++ M      P    +S L++    E  +  A D   EM  +G+  +V  
Sbjct: 200 SGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVT 259

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNS-----------KGVAPNSRTCNIILNGLIGRGET 356
            N L+   C + K K+   + K M              GV P+ +T NI+++GLI  G+ 
Sbjct: 260 CNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKF 319

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA  ++  M  +    D  TY+ MI   C+   L++A +++  M  K F P++ TF+ L
Sbjct: 320 LEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTL 379

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           I G C  G+V D   L  +M  +GI  +  T+
Sbjct: 380 ITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 125/283 (44%), Gaps = 13/283 (4%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y  MI       ++     L+  M  +++  +V TF  ++    +   +  A     
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------PDSKTY 203
            M   GV  N+   N LL  LC S  ++ A E+F  M+   +            PD +TY
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTY 306

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +IL+ G   +     A E++ EM   G  PD VTY  M++ LCK  R+DEA  +  SM S
Sbjct: 307 NILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGS 366

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    ++ L+  Y     ++D ++ F EM + GI+A+   Y  LI  F K      
Sbjct: 367 KSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNING 426

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
              + ++M S GV P++ T   +L GL  + E  +A  +   +
Sbjct: 427 SLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 6/239 (2%)

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DI ++ I++   C   ++  AL     +      PT   ++ L+H   VE+R+ +A+D F
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M K     +V  +  L+   C+  +      +L  M   G+ PN  T   I++G+   
Sbjct: 74  HQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 354 GETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           G+T  A  + R+M +L     D   Y+ +I    + G    A  ++  M+ K   P + T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +S +ING C  G  S++  LL++M+ + I P   TF  L   L+KEG  +  + L ++M
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 8/275 (2%)

Query: 197 IP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           IP D  +++IL++ +     LP A   F ++   G +P +VT+  ++  LC   RV EAL
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M    C+P    ++ L++    E R+ +AV     M ++G+  +   Y  ++   
Sbjct: 71  DLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126

Query: 316 CKANKFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
           CK     +   +L+ M     + P+    + I++GL   G   +A  +F  M  K    D
Sbjct: 127 CKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPD 186

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY+ MI  FC  G+  +A ++ + M +++  P + TFS LIN L  +G ++ +  LL+
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
           +MI  G+ P+  T   L   L   G+ +D L+  +
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 151/339 (44%), Gaps = 16/339 (4%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A    +  E+  + +  V  Y ++I+ L K  ++    +L   M+ K +  ++ T+  ++
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
             +    K  EA      M    ++ ++  F+GL++AL K  ++  AQ++   M    + 
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREM------VDT-----GCNPDIVTYGIMVDVLC 246
           P+  T + LL+G      L  A E+F+ M      +D      G  PD+ TY I++  L 
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G+  EA  + + M      P +  YS +++    ++R+++A   F  M       ++ 
Sbjct: 315 NEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIV 374

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI  +CKA    +   +  +M  +G+  N+ T   ++ G    G  + +  +F+ M
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434

Query: 367 IKLCEADADTYTM--MIKMFCQGGELEKAFKVWKYMKLK 403
           I       DT T+  M+       EL+KA  + + +++ 
Sbjct: 435 IS-SGVYPDTITIRNMLTGLWSKEELKKALAMLEELQMS 472



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 32  LDAAKSISKIMLSS---PKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWA 87
           L++A+ + + M+SS   P VV  +T LD  G+  S ++ +D LE F+ A   +       
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLD--GLCDSGKL-KDALEMFK-AMQKSMMDIDAT 293

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQK 146
                 E  V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++    +  +
Sbjct: 294 HAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSR 353

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSI 205
           ++EA   F+ M     + N+  FN L++  CK+  V    E+F  M  R  + ++ TY  
Sbjct: 354 LDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYIT 413

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           L+ G+ K  N+  + +IF+EM+ +G  PD +T   M+  L     + +AL +++ +
Sbjct: 414 LIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 195/378 (51%), Gaps = 5/378 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y ++I  L+ +   ++   +   M  +    NV+TF  +++ +    +V +AV  +
Sbjct: 278 NVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLW 337

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           N+M + GV+ N+ A+N L+  LC   N+ +A  +++ M KD   P+  TYS ++ G+ K 
Sbjct: 338 NLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKS 397

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A E + +M++ GC P++V Y  MVDVLC+    D+A  ++ +M S  C PT   +
Sbjct: 398 GDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITF 457

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +       R+E A++   +MEK   L ++  YN L+    +AN F+    +++++  
Sbjct: 458 NNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEE 517

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           + V  +  T N I+ G    G   +  ++  +M +   + D  T    +  +C+ G+++ 
Sbjct: 518 RKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKT 577

Query: 393 AFKVWKYMKL-KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL- 450
           A KV   +   K F   + T ++++ G+C+     ++ V L +M+++GI P+  T+  L 
Sbjct: 578 AIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLV 637

Query: 451 RKLLIKEGREDVLKFLQE 468
           R    K G    ++ L +
Sbjct: 638 RGFFSKLGHMGPIRILDD 655



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 187/396 (47%), Gaps = 9/396 (2%)

Query: 59  IRVSPEIVEDVLEKFR--NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           +  S E+ + V++ +R  N G      F +  ++   E SV+ Y+ ++++L     ++++
Sbjct: 105 VPCSQELFQFVIKCYRRSNLGEQGLKMF-YRIREFGCEPSVKIYNLVLDALLSQNLFKMI 163

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
             L N M+++ +  NV T+ ++++   +  KV+ A      M   G   +  ++  ++S+
Sbjct: 164 NALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISS 223

Query: 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           +CK  +V KA+E    +  +F P    Y+ L+ G  K+     A ++  EMVD G +P++
Sbjct: 224 MCKLGDVDKARE----LAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNV 279

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           ++Y  ++  L   G V+ +L +   M    CRP    ++ L+  + V  R+ DAV  +  
Sbjct: 280 ISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNL 339

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M + G+  +V  YN LI   C          V   M    + PN  T + I+ G    G+
Sbjct: 340 MIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGD 399

Query: 356 TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
              A   + +MI   C  +   YT M+ + CQ    ++AF +   M      P++ TF+ 
Sbjct: 400 LVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNN 459

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            I GLC  G V  +  +L+ M +    P+  T+ +L
Sbjct: 460 FIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNEL 495



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 121/280 (43%), Gaps = 32/280 (11%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDI-VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           ++ ++  + E F+ + ++G      +TY  M+D L +   +D    +++ M       + 
Sbjct: 50  QEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQ 109

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            ++  ++  Y   N  E  +  F  + + G    V +YN ++ A    N FK +  +  +
Sbjct: 110 ELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNN 169

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M S+G+ PN  T N++L  L   G+ D A ++   M  K C+ D  +YT +I   C+ G+
Sbjct: 170 MKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGD 229

Query: 390 LEKA------------------------------FKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++KA                              F +   M  +   P++ ++S +I+ L
Sbjct: 230 VDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCL 289

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            D G V  S  +   M  +G RP+ +TF  L K     GR
Sbjct: 290 SDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGR 329



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQ 112
           +++  IR +      ++  F  +G L      W +        +V  Y  M++ L ++  
Sbjct: 375 MEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSM 434

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +   +DL++ M +      V TF   ++   R  +VE A+   + M+KY    N+  +N 
Sbjct: 435 FDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNE 494

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LL  L ++   R+A  +   +++R +  D  TY+ ++ G+  +    +  ++  +M+  G
Sbjct: 495 LLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNG 554

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT---YGVENRI- 286
              D +T    V+  CK G+V  A+ ++ ++ +       F   ++ HT   +G+ N + 
Sbjct: 555 IKLDTITVNTTVNAYCKLGKVKTAIKVLDNISA----EKEFRADIITHTIILWGICNWLG 610

Query: 287 -EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            E+AV    EM K GI  ++A +N L+  F          R+L D+
Sbjct: 611 TEEAVVYLHEMLKRGIFPNIATWNVLVRGFFSKLGHMGPIRILDDI 656



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 283 ENRIEDAVDTFLEMEKNGILADVAM-YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           E+ I  +++ F  +  +G      + Y  +I    + N+   V  +L+ M  + V  +  
Sbjct: 51  EHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQE 110

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
               ++         ++  ++F R+ +  CE     Y +++         +    ++  M
Sbjct: 111 LFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNM 170

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-- 458
           K +   P++ T++VL+  LC  G V  +C LL +M  KG  P   ++  +   + K G  
Sbjct: 171 KSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDV 230

Query: 459 ---REDVLKF 465
              RE  +KF
Sbjct: 231 DKARELAMKF 240


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 171/362 (47%), Gaps = 3/362 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKV 147
           K + +   +  Y+ MI SL   R+  +   +++ +     M  V T+ I++        +
Sbjct: 174 KARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGI 233

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA+     M   G+  ++  +N ++  +CK   V +A E+   +  +   PD  +Y+IL
Sbjct: 234 NEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNIL 293

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L  +          ++  EM   GC P+ VTY I++  LC+ GR+DEA+ ++K M     
Sbjct: 294 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKEL 353

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P ++ Y  L+     E R++ A+     M  NG L D+  YN ++ A CK         
Sbjct: 354 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +   +   G  PN  + N +++ L   G+   A  +   MI K  + D  TY  +I   C
Sbjct: 414 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLC 473

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G +E+A  +   M+   F P++ ++++++ GLC    + D+  +  +MIEKG RP+  
Sbjct: 474 RDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNET 533

Query: 446 TF 447
           T+
Sbjct: 534 TY 535



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 1/326 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++ +  +  K  E++Y    +   G T ++     L+      KN+ KA  + + ++   
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD   Y+ ++ G+ K   +  A ++   M   G  PDIVTY IM+  LC   ++  AL 
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  +    C PT   Y++L+    VE  I +A+    EM   G+L D+  YNA+I   C
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 263

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K    +    ++  + SKG  P+  + NI+L   + +G+ DE  ++   M  + CE +  
Sbjct: 264 KEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 323

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+++I   C+ G +++A  V K M  K   P  +++  LI+ LC +G +  +  +++ M
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 383

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           I  G  P    +  +   L K G  +
Sbjct: 384 ISNGCLPDIVNYNTILAALCKNGNAN 409



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 151/316 (47%), Gaps = 3/316 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           +++ +   + +E+A     +++ +    ++ A+N ++S  CK   +  A ++ + MK R 
Sbjct: 119 LIKGFFNFKNIEKASRVMEILESH-TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARG 177

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F+PD  TY+I++        L  A  +  +++   C P ++TY I+++     G ++EA+
Sbjct: 178 FLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAM 237

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M +    P  + Y+ ++     E  +E A +    +   G   DV  YN L+ AF
Sbjct: 238 KLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAF 297

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
               K+    +++ +M S+G  PN  T +I+++ L   G  DEA  V + MI K    D 
Sbjct: 298 LNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDT 357

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +Y  +I   C+ G L+ A  +  YM     +P +  ++ ++  LC  G  + +  +   
Sbjct: 358 YSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK 417

Query: 435 MIEKGIRPSGETFGKL 450
           +   G  P+  ++  +
Sbjct: 418 LRGMGCPPNVSSYNTM 433



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 1/256 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+ I++    R  +++EA+    VM +  +T +  +++ L+SALCK   +  A  I 
Sbjct: 321 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 380

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  +PD   Y+ +L    K+ N  +A EIF ++   GC P++ +Y  M+  L   
Sbjct: 381 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 440

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G    ALG+V +M S    P    Y+ L+     +  +E+A+    +ME++G    V  Y
Sbjct: 441 GDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISY 500

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK  +  +   +  +M  KG  PN  T  +++ G+   G   EA  +   +  
Sbjct: 501 NIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 560

Query: 369 LCEADADTYTMMIKMF 384
                 D++  + K F
Sbjct: 561 RDVISQDSFKRLNKTF 576



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           L+   CKA KF      L+ + +KG  P+   C  ++ G       ++A RV   +    
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E D   Y  +I  FC+  ++E A +V   MK + F+P + T++++I  LC++  +  +  
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           +L+ ++     P+  T+  L +  I EG   + +K L+E +
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEML 244


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 167/338 (49%), Gaps = 3/338 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           F  ++   A+++     +     M  +GV  N+   N L+++ C    V  A  +    +
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 118

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    PD  T++ L+ G   +  +  A  +F +M+D G  P++VTYG +++ LCK G   
Sbjct: 119 KLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTS 178

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A+ +++SM+   C+P   IY+ ++ +   + ++ +A + F +M   GI  D+  Y +L+
Sbjct: 179 AAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 238

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
            A C   ++K+V  +L  M +  + P+    + +++ L   G+  EA+ +   MI+   E
Sbjct: 239 HALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 298

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYT ++   C   E+++A KV+  M  K F P + +++ LING C    +  +  L
Sbjct: 299 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 358

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            E+M  K   P  +T+  L   L   GR +D +    E
Sbjct: 359 FEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHE 396



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 213/466 (45%), Gaps = 14/466 (3%)

Query: 5   YHSRN---KMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSG 58
           +HS++     +   +S   R     P    +D AK   SI+K+   S  + L T +D  G
Sbjct: 27  FHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFG 86

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQ 114
           +  +   +  ++  F +   + F F   A+  +  ++     + ++I  L    KI +  
Sbjct: 87  VPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEAL 146

Query: 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
            ++D    +      NV T+  ++    +V     A+     M++     ++  +  ++ 
Sbjct: 147 HLFD--KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIID 204

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           +LCK + V +A  +F  M  + I PD  TY+ L+              +  +MV++   P
Sbjct: 205 SLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILP 264

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+V +  +VD LCK G+V EA  IV  M      P    Y+ L+  + +++ +++AV  F
Sbjct: 265 DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 324

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M + G   DV  Y  LI  +CK +K      + ++M  K   P+++T N +++GL   
Sbjct: 325 DMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHV 384

Query: 354 GETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G   +A  +F  M+   +  D  TY++++   C+   LE+A  + K ++     P +  +
Sbjct: 385 GRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVY 444

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +++I+G+C  G +  +  L  ++  KG+ PS  T+  +   L K G
Sbjct: 445 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 490



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 176/354 (49%), Gaps = 3/354 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           Q     +  Y S++ +L  + +++ +  L+N M   ++L +V  F  ++    +  KV E
Sbjct: 225 QGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTE 284

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLE 208
           A    ++M + GV  ++  +  L+   C    + +A ++FD M +  F PD  +Y+ L+ 
Sbjct: 285 AHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLIN 344

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ K   + +A  +F EM      PD  TY  ++  LC  GR+ +A+ +   M +    P
Sbjct: 345 GYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMP 404

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               YS+L+ +      +E+A+     +E + +  D+ +YN +I   C+A + +    + 
Sbjct: 405 DLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLF 464

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
            +++SKG+ P+  T NI+++GL  RG  +EA ++F  M    C  D  TY  + + F Q 
Sbjct: 465 SNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQN 524

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            E  +A ++ + M  + F   + T ++L+  L D G+   SC L+  ++ +  R
Sbjct: 525 NETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGLDQSSCFLMLSVLSEDDR 578


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I+ L K  Q    + L   M       N   +  ++R +    + E+    F  + 
Sbjct: 461 YCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELI 520

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           + G   +L   N  +  + K+  V K + IF+ ++   F+PD ++YSIL+ G  K     
Sbjct: 521 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 580

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
               IF  M   G   D   Y  +VD  CK+G+V +A  I++ M     +PT   Y  +V
Sbjct: 581 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIV 640

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E +  GI  +V +Y++LI  F K  +    Y +L++M  KG+ 
Sbjct: 641 DGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 700

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M ++ C  +  TY+++I   C+  +  KAF  
Sbjct: 701 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 760

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           W+ M+ +  +P++ T++ +I+GL   G ++D+  L E     G  P   +F  L
Sbjct: 761 WQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 814



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 190/387 (49%), Gaps = 7/387 (1%)

Query: 90  QQNYEHSVR---AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           Q   E SV    AY++MI       +++  + L+  +R +  + +V +F  I+    + +
Sbjct: 309 QMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 368

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYS 204
           KV+EA+  F VM+K     N + +N ++  LC    V +A  I D M+     P+  T +
Sbjct: 369 KVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 427

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           I+++   K   L  A +IF      GCNPD VTY  ++D L K G+VDEA  + + M   
Sbjct: 428 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 487

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                  +Y+ L+  + +  R ED    F E+ + G   D+ + N  +    KA + +  
Sbjct: 488 GHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 547

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKM 383
             + +D+ S G  P+ R+ +I+++GL   G+  E   +F  M +   A DA  Y  ++  
Sbjct: 548 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 607

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC+ G++ KA+++ + MK K   P++ T+  +++GL     + ++ +L E+   KGI  +
Sbjct: 608 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 667

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
              +  L     K GR D    + E+M
Sbjct: 668 VVLYSSLIDGFGKVGRIDEAYLILEEM 694



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 184/435 (42%), Gaps = 72/435 (16%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           SV +++S++  L K R+      L   M+     N  T+ II+       +VEEA    +
Sbjct: 353 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 412

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M+   +  NL   N ++  LCK++ + +A +IF+    R   PD  TY  L++G GK  
Sbjct: 413 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 472

Query: 215 NLPRA-----------------------------------REIFREMVDTGCNPDIVTYG 239
            +  A                                    +IF+E++  GC PD+    
Sbjct: 473 QVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLN 532

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
             +D + KAG V++   I + + S    P    YS+L+H      +  +  + F  M++ 
Sbjct: 533 TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQ 592

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D   YNA++  FCK+ K    Y +L++M  K V P   T   I++GL      DEA
Sbjct: 593 GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEA 652

Query: 360 YRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV---------------------- 396
           Y +F     K  E +   Y+ +I  F + G +++A+ +                      
Sbjct: 653 YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 712

Query: 397 -------------WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                        ++ MK  +  P+ +T+S+LINGLC     + + V  +DM ++G+ P+
Sbjct: 713 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 772

Query: 444 GETFGKLRKLLIKEG 458
             T+  +   L K G
Sbjct: 773 VVTYTTMISGLAKVG 787



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 206/459 (44%), Gaps = 28/459 (6%)

Query: 19  LRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           L R  S+ P T   D A+++S    +SP               + ++V  VL   RN   
Sbjct: 47  LLRLLSAAP-TWTPDLARAVSSTFSASP---------------TADVVISVLRSIRNPSL 90

Query: 79  LAFCFFKWAEKQQNYEHSVRA--YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV----E 132
            A  F   +    +  H + A  YH+++  L     +  +  L   +    +L      +
Sbjct: 91  AAPFFLLASSSSASAPHPLPADAYHAVLPFL-----HHDLAALEKVLEEMAVLGYGLPNQ 145

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
               +     R +++++AV    VM++       +A+  L+ AL +++   +A E+   M
Sbjct: 146 ACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQM 205

Query: 193 KD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++  +      ++ L+    ++  +  A  +  E+  +   PDIV Y + +D   KAG V
Sbjct: 206 QEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNV 265

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D A      + +   +P    Y+ ++       R+ +A + F +ME    +     YN +
Sbjct: 266 DMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 325

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I  +  A +F++ Y++L+ +  +G  P+  + N IL  L  + + DEA  +F  M K  E
Sbjct: 326 IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE 385

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            ++ TY ++I M C GG +E+A+++   M+     P++ T +++++ LC    + ++  +
Sbjct: 386 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKI 445

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            E   ++G  P   T+  L   L K+G+ D    L EKM
Sbjct: 446 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 200/423 (47%), Gaps = 43/423 (10%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           ++  YE  V  + +++ +LA+  Q      LV+ ++   +  ++  + + +  + +   V
Sbjct: 206 QEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNV 265

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSIL 206
           + A   F+ ++  G+  +  ++  ++  LCK+  + +A+E+F  M+ +R +P +  Y+ +
Sbjct: 266 DMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 325

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+G       A ++   + + GC P +V++  ++  L K  +VDEAL + + M     
Sbjct: 326 IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA- 384

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P S  Y++++    +  R+E+A     EME   +  ++   N ++   CKA K +  Y+
Sbjct: 385 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 444

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMF- 384
           + +  + +G  P+  T   +++GL  +G+ DEAYR+F +M+     A+   YT +I+ F 
Sbjct: 445 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFF 504

Query: 385 --------------------------------C--QGGELEKAFKVWKYMKLKRFIPSMH 410
                                           C  + GE+EK   +++ ++   F+P + 
Sbjct: 505 IHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVR 564

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFL 466
           ++S+LI+GL   G   ++  +   M ++G       +  +     K G+     ++L+ +
Sbjct: 565 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM 624

Query: 467 QEK 469
           +EK
Sbjct: 625 KEK 627



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 2/269 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           VR+Y  +I  L K  Q +   ++ +AM+ +   L+   +  ++  + +  KV +A     
Sbjct: 563 VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 622

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M++  V   +A +  ++  L K   + +A  +F+  K + I  +   YS L++G+GK  
Sbjct: 623 EMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVG 682

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I  EM+  G  P++ T+  ++D L KA  ++EAL   +SM    C P ++ YS
Sbjct: 683 RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 742

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L++      +   A   + +M+K G++ +V  Y  +I    K     + Y + +   + 
Sbjct: 743 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 802

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           G  P++ + N ++ G+       EAY+VF
Sbjct: 803 GGIPDAASFNALIEGMSNANRAMEAYQVF 831



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 125/266 (46%), Gaps = 2/266 (0%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           A KQQ +    RAY+++++   K  +    ++++  M+ K +   V T+  I+   A++ 
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 647

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYS 204
           +++EA   F   +  G+  N+  ++ L+    K   + +A  I +  MK    P+  T++
Sbjct: 648 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 707

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            LL+   K   +  A   F+ M +  C P+  TY I+++ LC+  + ++A    + M   
Sbjct: 708 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQ 767

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ ++        I DA   F   + NG + D A +NALI     AN+    
Sbjct: 768 GLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEA 827

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGL 350
           Y+V ++   +G   N ++C  +L+ L
Sbjct: 828 YQVFEETRLRGCRINIKSCISLLDAL 853



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           GI ++  +   +++ F   G +   +    E  ++    +V  ++S++++L K  +    
Sbjct: 663 GIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEA 722

Query: 117 WDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
                +M+  K   N  T+ I++    RVQK  +A   +  MQK G+  N+  +  ++S 
Sbjct: 723 LVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISG 782

Query: 176 LCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L K  N+  A  +F+  K +  IPD+ +++ L+EG         A ++F E    GC  +
Sbjct: 783 LAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRIN 842

Query: 235 IVTYGIMVDVLCKAGRVDEA 254
           I +   ++D L K+  +++A
Sbjct: 843 IKSCISLLDALNKSECLEQA 862


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 173/341 (50%), Gaps = 3/341 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++    R   +++ +   + M + G   ++  +N L+S LCK   + +A EI   M
Sbjct: 304 TFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHM 363

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R   P++ TY+ L+    K+ ++  A E+ R +   G  PD+ T+  ++  LC     
Sbjct: 364 VSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNR 423

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           + A+ + + M    C P  F YS+L+ +   E R+++A+    EME +G   +V +YN L
Sbjct: 424 EIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTL 483

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I   CK N+  +   +   M   GV+ +S T N ++NGL      +EA ++  +MI +  
Sbjct: 484 IDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGL 543

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TYT M+K FCQ G++++A  + + M L    P + T+  LI GLC  G V  +  
Sbjct: 544 KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASK 603

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           LL  +  KG+  + + +  + + L K  R ++ ++  +E M
Sbjct: 604 LLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMM 644



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 176/352 (50%), Gaps = 3/352 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            +++++  L +    +   ++++ M  K   L+V T+  ++    ++ +++EAV   + M
Sbjct: 304 TFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHM 363

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                  N   +N L+  LCK  +V  A E+   +  +  +PD  T++ L++G     N 
Sbjct: 364 VSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNR 423

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E+F EM + GC+PD  TY I+++ LC   R+ EAL ++K M+ + C     +Y+ L
Sbjct: 424 EIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTL 483

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +      NR+ DA D F +ME  G+      YN LI   CK+ + +   +++  M  +G+
Sbjct: 484 IDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGL 543

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T   +L     +G+   A  + + M +  CE D  TY  +I   C+ G ++ A K
Sbjct: 544 KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASK 603

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + + +++K  + +   ++ +I  LC +    ++  L  +M+EKG  P   T+
Sbjct: 604 LLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITY 655



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 194/413 (46%), Gaps = 9/413 (2%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVN 121
           SP  + D+L +  ++ + A   F+WA  Q NY      +H ++  LA+   +  M  L+ 
Sbjct: 58  SPSQLLDLLRRQPDSSS-ALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLR 116

Query: 122 AMRTKRM-LNVETFCIIMRKYARVQKVEEAVYT-FNVMQK-YGVTQNLAAFNGLLSALCK 178
            M + ++ ++  TF I +  YA    +   +   F +M++ + V  +   +N  LS L K
Sbjct: 117 QMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVK 176

Query: 179 SKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           +  ++  + +   M  D   PD  T++IL+    K   L  A  +  +M + G  PD  T
Sbjct: 177 ANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKT 236

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           +  ++    +   V+ AL I + M  + C  TS   +VLV+    E RIE+A+    E E
Sbjct: 237 FTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEE 296

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G   D   +NAL+   C+    K    ++  M  KG   +  T N +++GL   GE D
Sbjct: 297 --GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEID 354

Query: 358 EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA  +   M+ + CE +  TY  +I   C+   +E A ++ + +  K  +P + TF+ LI
Sbjct: 355 EAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLI 414

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            GLC       +  L E+M EKG  P   T+  L + L  E R ++ L  L+E
Sbjct: 415 QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKE 467



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 178/396 (44%), Gaps = 39/396 (9%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++ +E  V  Y+S+I  L K+ +     ++++ M ++    N  T+  ++    +   VE
Sbjct: 330 EKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVE 389

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A     V+   GV  ++  FN L+  LC + N   A E+F+ MK++   PD  TYSIL+
Sbjct: 390 AATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILI 449

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA---------LGIV 258
           E    +  L  A  + +EM  +GC  ++V Y  ++D LCK  RV +A         LG+ 
Sbjct: 450 ESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVS 509

Query: 259 KS-----------------------MDSTV---CRPTSFIYSVLVHTYGVENRIEDAVDT 292
           +S                       MD  +    +P  F Y+ ++  +  +  I+ A D 
Sbjct: 510 RSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADI 569

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M  NG   D+  Y  LIG  CKA +     ++L+ +  KG+    +  N ++  L  
Sbjct: 570 VQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCK 629

Query: 353 RGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMH 410
           R  T EA R+FR M++  +  D  TY ++ +  C GG  +++A      M  K  +P   
Sbjct: 630 RKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFP 689

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           +F  L  GLC   +      L+  ++EKG     ET
Sbjct: 690 SFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSET 725



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 173/364 (47%), Gaps = 3/364 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  ++ +I +L K  Q +    ++  M    +   E TF  +M+ +     VE A+    
Sbjct: 199 VSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKE 258

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +M + G      + N L++ LCK   + +A   F   ++ F PD  T++ L+ G  +  +
Sbjct: 259 LMVESGCELTSVSVNVLVNGLCKEGRIEEALR-FIYEEEGFCPDQVTFNALVNGLCRTGH 317

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           + +  E+   M++ G   D+ TY  ++  LCK G +DEA+ I+  M S  C P +  Y+ 
Sbjct: 318 IKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNT 377

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+ T   EN +E A +    +   G+L DV  +N+LI   C  +  +    + ++M  KG
Sbjct: 378 LIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKG 437

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
             P+  T +I++  L       EA  + + M +  C  +   Y  +I   C+   +  A 
Sbjct: 438 CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAE 497

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  M++     S  T++ LINGLC    V ++  L++ MI +G++P   T+  + K  
Sbjct: 498 DIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYF 557

Query: 455 IKEG 458
            ++G
Sbjct: 558 CQQG 561


>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 191/406 (47%), Gaps = 2/406 (0%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIES 106
           K  +   L   GI +S +IV DVL +   +G     FF WA ++      V +Y  ++ +
Sbjct: 96  KSAIQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFFNWAIREPGVSKDVDSYCVILRA 155

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L + + +  M D++  M  + +  ++    I M  + R   V  A+  F   + YGV  +
Sbjct: 156 LGRRKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVRAHYVRRAIELFEESESYGVKCS 215

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +FN LL  LC+  +V  A  +F+  K +   DS +Y+I++ GW K   +    ++ +E
Sbjct: 216 TESFNALLRCLCERSHVSAANSVFNAKKGKIPFDSCSYNIMISGWSKLGEIEGMEKVLKE 275

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           MV+ G  PD ++Y  +++ L +AGR+++++ I  +M        + +Y+ ++  +     
Sbjct: 276 MVEGGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNMKHKGSVLDANVYNAMICNFISARD 335

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++++  +  M       ++  Y+ L+    K  K  +   + ++M S+G+ P +     
Sbjct: 336 FDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGILPTTGLVTS 395

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            L  L   G    A  ++++  K  C      Y +++K   + G+      VW  M+   
Sbjct: 396 FLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQECG 455

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +   +  +  +++GLC  G + ++ +++E+ + KG  P+   + +L
Sbjct: 456 YPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRL 501


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 161/325 (49%), Gaps = 8/325 (2%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDS 200
           A+ ++    V   N M  +GV  N    N L+++LC+  ++  A  +   M K    PDS
Sbjct: 97  AKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDS 156

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            T++ L+ G   +  +  A E+F EM      P+ VT+ I+VDVLCK G V EA  + ++
Sbjct: 157 VTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFET 216

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M      P  + Y+ L++ Y +   + DA   F  M   G    V  Y+ LI  +CK+ +
Sbjct: 217 MTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRR 276

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA----DADT 376
                 +L  M+ K + PN+ T N ++ GL       EA  +F++M   C +    +  T
Sbjct: 277 IDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKM---CSSGMLPNLRT 333

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y++++   C+ G LE+A K+   M+ ++  P +  +++LI G+   G +  +  L   + 
Sbjct: 334 YSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLF 393

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
             GIRPS  T+  + K L+KEG  D
Sbjct: 394 ANGIRPSVRTYNIMIKGLLKEGLSD 418



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 3/340 (0%)

Query: 106 SLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           S+AK +QY  +  L N M    +  N  T  I++    R+  +  AV   + M K G+  
Sbjct: 95  SIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQP 154

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF 223
           +   F  L++ LC    +++A E+F+ M  R  +P++ T++IL++   K   +  AR +F
Sbjct: 155 DSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVF 214

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             M + G  P+I TY  +++  C    +++A  + + M    C P+   YS+L++ Y   
Sbjct: 215 ETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKS 274

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            RI++A     +M +  ++ +   YN L+   C A+       + K M S G+ PN RT 
Sbjct: 275 RRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTY 334

Query: 344 NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           +I+L+GL   G  +EA ++   M  +  E D   Y ++I+     G+LE A +++  +  
Sbjct: 335 SILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFA 394

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
               PS+ T++++I GL  +G+  ++  L   M + G  P
Sbjct: 395 NGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 137/256 (53%), Gaps = 2/256 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  +M  Y    ++ +A   F +M   G   ++ +++ L++  CKS+ + +A+ + 
Sbjct: 225 NIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALL 284

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M ++  IP++ TY+ L++G     +L  A+E+F++M  +G  P++ TY I++D LCK 
Sbjct: 285 TQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKH 344

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++EAL ++ SM      P   +Y++L+    +  ++E A + F ++  NGI   V  Y
Sbjct: 345 GHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTY 404

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N +I    K       Y++ + M   G  P+S + N+I+ G +   +   A ++   M+ 
Sbjct: 405 NIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVG 464

Query: 368 KLCEADADTYTMMIKM 383
           +   AD+ T+ M++ +
Sbjct: 465 RRFSADSSTFKMLLDL 480



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 1/222 (0%)

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           +D+A+     M     RP+       + +   + +    V    +M+  G+  +    N 
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI + C+ +       VL  M   G+ P+S T   ++NGL   G   EA  +F  M  + 
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              +  T+T+++ + C+ G + +A  V++ M  K   P+++T++ L+NG C +  ++D+ 
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDAS 246

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            + E M+ KG  PS  ++  L     K  R D  K L  +M+
Sbjct: 247 KVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMS 288


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 196/435 (45%), Gaps = 45/435 (10%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
           F    +Q+ + H+   Y ++I  LA+ +++  +  L++ M  +    +   F  +M+ + 
Sbjct: 79  FNMVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHENIFLNLMKHFY 138

Query: 143 RVQKVEEAVYTFNVMQ-------------------------------------KYGVTQN 165
           +    E  +  F  +Q                                        V  N
Sbjct: 139 KSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPN 198

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIF 223
              FN L+   CKS ++  A E+   MK   R  P+  TYS L++G   +  L  A E+F
Sbjct: 199 TCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELF 258

Query: 224 REMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
            EMV      PD +TY +++   C  G+ D A  I++ M S  C P  F YSVL++ +  
Sbjct: 259 EEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCK 318

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           E R+E+A + F EM+ +G+  D   Y  LI  FC   +      +LK+M       ++ T
Sbjct: 319 EGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVT 378

Query: 343 CNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N++L GL   G  DEA R+   +  +    +  +Y +++   CQ GELEK+  +   M 
Sbjct: 379 FNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLML 438

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            + F+P   T + L+  LC+ G+V ++   L  + + G  P  +++  L + +    RE 
Sbjct: 439 SRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPEPKSWAHLIEYIC---RER 495

Query: 462 VLKFLQEKMNLLVKE 476
            L F+ E ++ LV++
Sbjct: 496 KLLFVFELVDELVEK 510



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 151/326 (46%), Gaps = 7/326 (2%)

Query: 143 RVQKVEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DS 200
           R +  + A+  FN V ++ G   N A ++ L+  L ++K       +   M         
Sbjct: 68  REKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHE 127

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             +  L++ + K     R  E+F  +       P +      +++L ++ ++D A   + 
Sbjct: 128 NIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLAQKCLL 187

Query: 260 SMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCK 317
            ++  +  RP + I+++LV  +     +E A++   EM+K+     +V  Y+ LI   C 
Sbjct: 188 YVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCG 247

Query: 318 ANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
             + K    + ++M SK  + P++ T ++++ G    G+ D A ++   M    C+ +  
Sbjct: 248 NGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVF 307

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y++++  FC+ G LE+A +V+  MK     P    ++ LIN  C  G + ++  LL++M
Sbjct: 308 NYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEM 367

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
            E   +    TF  L K L +EGR D
Sbjct: 368 TEMKCKADAVTFNVLLKGLCREGRFD 393



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 143/299 (47%), Gaps = 8/299 (2%)

Query: 178 KSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           + K+ + A EIF+ + ++  F  +  TYS L+    +         +  +M    C    
Sbjct: 68  REKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHE 127

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFL 294
             +  ++    K+   +  L +  ++   V  +P+    S  ++      +I+ A    L
Sbjct: 128 NIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLAQKCLL 187

Query: 295 EMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIG 352
            + ++  +  +  ++N L+   CK+   ++   V+ +M  S+   PN  T + +++GL G
Sbjct: 188 YVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCG 247

Query: 353 RGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
            G   EA  +F  M+   +   DA TY+++IK FC GG+ ++A K+ ++M+     P++ 
Sbjct: 248 NGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVF 307

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +SVL+NG C +G + ++  + ++M   G++P    +  L       GR ++ ++ L+E
Sbjct: 308 NYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKE 366


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 206/453 (45%), Gaps = 29/453 (6%)

Query: 17  SFLRRYNS--SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFR 74
           SF R +NS  S  ST  +   + ISK +LSS    ++    Q    ++P ++ +VL    
Sbjct: 52  SFNRNFNSLASSESTPPI-TZEVISKSVLSSQWHFIE----QVSPNLTPALISNVLYNLC 106

Query: 75  NAGTLAFCFFKWAEKQQNYEH--SVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNV 131
           +   L   F         + H    ++Y   +  LA++   ++   L+   M T+   N 
Sbjct: 107 SKPQLVSDFI-----HHLHPHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMETRIATNR 161

Query: 132 ETFCIIMRKYARVQ------------KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           E F  +     R+             K+++A      M+  G   N+ ++N ++      
Sbjct: 162 ELFDELTLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 221

Query: 180 KNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
            N+  A+ I D M+ + I PDS TY  L+ G  K+  L  A  +F +MV+ G  P+ VTY
Sbjct: 222 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 281

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++D  C  G ++ A      M      P+   Y++LVH   +E R+ +A D   EM K
Sbjct: 282 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 341

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI+ D   YN LI  + +    K  + +  +M SKG+ P   T   ++  L  R    E
Sbjct: 342 KGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKE 401

Query: 359 AYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  +F +++ +    D   +  MI   C  G +E+AF + K M  K   P   TF+ L+ 
Sbjct: 402 ADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 461

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           G C +G V ++ +LL++M  +GI+P   ++  L
Sbjct: 462 GRCREGKVEEARMLLDEMKXRGIKPDHISYNTL 494



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 177/373 (47%), Gaps = 19/373 (5%)

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
           Q++ D ++ +     L+ +++C+ +   AR+   + A+     + +  +  N   F+ L 
Sbjct: 110 QLVSDFIHHLH-PHCLDTKSYCLAVVLLARLPSPKLALQLLKQVMETRIATNRELFDEL- 167

Query: 174 SALCKSKNVRKAQEIFDCMKDR---------------FIPDSKTYSILLEGWGKDPNLPR 218
             L + +   K+  +FD ++ +               F P+  +Y+ ++ G+    N+  
Sbjct: 168 -TLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEG 226

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           AR I   M   G  PD  TYG ++  +CK GR++EA G+   M      P +  Y+ L+ 
Sbjct: 227 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 286

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            Y  +  +E A     EM K GI+  V+ YN L+ A     +      ++K+M  KG+ P
Sbjct: 287 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 346

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           ++ T NI++NG    G    A+ +   M+ K  E    TYT +I +  +   +++A  ++
Sbjct: 347 DAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 406

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           + +  +   P +  F+ +I+G C  G V  + +LL++M  K + P   TF  L +   +E
Sbjct: 407 EKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 466

Query: 458 GREDVLKFLQEKM 470
           G+ +  + L ++M
Sbjct: 467 GKVEEARMLLDEM 479



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 165/364 (45%), Gaps = 38/364 (10%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           A + +  E     Y S+I  + K  + +    L + M    ++ N  T+  ++  Y    
Sbjct: 233 AMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 292

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
            +E A    + M K G+  +++ +N L+ AL     + +A ++   M+ +  IPD+ TY+
Sbjct: 293 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN 352

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           IL+ G+ +  N  RA ++  EM+  G  P  VTY  ++ VL +                 
Sbjct: 353 ILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSR----------------- 395

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                              NR+++A D F ++   G+  DV M+NA+I   C     +  
Sbjct: 396 ------------------RNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERA 437

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
           + +LK+M+ K V P+  T N ++ G    G+ +EA  +   M  +  + D  +Y  +I  
Sbjct: 438 FMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISG 497

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + + G+++ AF V   M    F P++ T++ LI  LC       +  LL++M+ KGI P 
Sbjct: 498 YGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 557

Query: 444 GETF 447
             T+
Sbjct: 558 DSTY 561



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           VE A      M +  V  +   FN L+   C+   V +A+ + D MK R I PD  +Y+ 
Sbjct: 434 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNT 493

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G+G+  ++  A  +  EM+  G NP ++TY  ++  LCK    D A  ++K M +  
Sbjct: 494 LISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG 553

Query: 266 CRPTSFIYSVLVHTYG-VENRIED 288
             P    Y  L+   G V+  +ED
Sbjct: 554 ISPDDSTYLSLIEGMGNVDTLVED 577


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 228/496 (45%), Gaps = 40/496 (8%)

Query: 3   KVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLD-TAL---DQSG 58
           K +H R K+  G           + S EA  AA+ I    LS+P +  + TAL     S 
Sbjct: 113 KFHHGRQKLYMG-----------KHSPEADMAAQEI----LSAPSMSGNSTALLLEKWSH 157

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS----------MIESLA 108
             V  E    +L +  N G       +W    Q YE  V+  H           MI +L 
Sbjct: 158 QLVGLEDFPYLLRELGNRG-------EWERALQGYEWMVQQGHLRSEWSKLASIMISTLG 210

Query: 109 KIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           ++ + +I  D+ N A +     NV  +  ++  Y R  +  EA+  F  M+K G   NL 
Sbjct: 211 RLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLI 270

Query: 168 AFNGLLSALCKSK-NVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
            +N ++ A  K   +++KA +IF+ M+   + PD  T++ L+    +      ++ +F E
Sbjct: 271 TYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAE 330

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M   G   DI TY  ++D +CK G+++ A  I+ SM      P    YS ++  YG    
Sbjct: 331 MQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGC 390

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            E+A+  + +M+++G+  D   YN LI  + K  +F +     KDM   G+  +  T N 
Sbjct: 391 FEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNA 450

Query: 346 ILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++    +G+  +A  +F +M  +    +  TY+ +I  + + G  + A  ++   K   
Sbjct: 451 LIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAG 510

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P +  +S LI+  C  G+V D+ VLL++M + GI+P+  T+  L     + G+ D ++
Sbjct: 511 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVE 570

Query: 465 FLQEKMNLLVKEPLCD 480
             +  M + V   + D
Sbjct: 571 AAKGNMPINVFNKVGD 586



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 156/347 (44%), Gaps = 44/347 (12%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++   +R    E++   F  MQ+ G+ Q++  +N L+ A+CK   +  A  I   M
Sbjct: 307 TFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSM 366

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           + + I P+  TYS +++G+GK      A  ++ +M ++G  PD V+Y  ++D+  K GR 
Sbjct: 367 RLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRF 426

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+AL   K M+    +     Y+ L+  YG + + +DA   F +M+  G++ +V  Y+AL
Sbjct: 427 DDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSAL 486

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I A+ KA   ++   +  +    G+ P+    + +++     G  ++A  + + M +   
Sbjct: 487 IDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGI 546

Query: 371 EADADTYTMMIKMFCQGGELEK-------------------------------------- 392
           + +  TY  +I  + + G+++                                       
Sbjct: 547 QPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHT 606

Query: 393 ----AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
               A  V+  M+     P++ TFS ++N       + ++ VLLE M
Sbjct: 607 GVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQM 653



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 111/264 (42%), Gaps = 56/264 (21%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I++  K  +Y+    L + M+ + ++ NV T+  ++  Y++    ++A   F 
Sbjct: 445 VVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFV 504

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
             ++ G+  ++  ++ L+ + CK   V  A  +   M    I P+  TY+ L++ +G++ 
Sbjct: 505 EFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNG 564

Query: 215 ----------NLP---------RAREI-----------------------FREMVDTGCN 232
                     N+P         R+ EI                       F EM   G  
Sbjct: 565 QVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLK 624

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-----ENRIE 287
           P++VT+  +++   +   + EA  +++ M        S++Y +    +G+     E+   
Sbjct: 625 PNVVTFSAILNACSRCSSLQEASVLLEQMRFF----DSWVYGI---AHGLLMGLREHVWV 677

Query: 288 DAVDTFLEMEKNGILADVAMYNAL 311
           +A   F E+ +       A YNAL
Sbjct: 678 EAQRLFDEIARMDYATGAAFYNAL 701


>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 178/356 (50%), Gaps = 3/356 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKV 147
           +Q  ++H   +Y +++  LA+ R ++ +  L++ ++   +   ET F  +++ Y + Q  
Sbjct: 405 QQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIALIQHYGKSQMP 464

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           E+A+  F  M  +   + + +FN LL+ L +      A  IFD   K  F  +S +++I+
Sbjct: 465 EKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRSTKMGFRRNSISFNII 524

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++GW       +A ++F EM+D    P +VT+  ++  LC  G +D A+G+++ M     
Sbjct: 525 IKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLZDMIQKRH 584

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP +  Y++L+       + ++A     +M+  G    +  +  L+    +  +  +   
Sbjct: 585 RPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDXKT 644

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +L +M  +   P+  T NI++N L   G   EAY+V   M +  CE +A TY MM+  FC
Sbjct: 645 LLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYRMMVDGFC 704

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           Q  + E   KV   M +    P + +F  L+ GL   G +  +C +LE+M ++ +R
Sbjct: 705 QVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMR 760



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 149/306 (48%), Gaps = 2/306 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
           VQ  ++A+  FN  Q+ G   +  +++ L+  L +S+N    + + D +++  I   +T 
Sbjct: 391 VQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETL 450

Query: 204 SI-LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            I L++ +GK     +A E+F+ M    C+  IV++  +++VL +  R  +A+GI     
Sbjct: 451 FIALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRST 510

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               R  S  +++++  +  +   + A   F EM    +   V  +N+LIG  C      
Sbjct: 511 KMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLD 570

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
               +L+DM  K   PN+ T  +++ GL   G+  EA ++   M  + C+     + +++
Sbjct: 571 GAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLM 630

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G ++    +   MK +RF P + T+++LIN LC +G   ++  +L +M   G  
Sbjct: 631 SDLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCE 690

Query: 442 PSGETF 447
           P+  T+
Sbjct: 691 PNAATY 696



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 7/262 (2%)

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPT 269
           +DP+   A  +F +    G   D  +Y  +V  L ++   +    ++  + +    CR T
Sbjct: 392 QDPD--DALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRET 449

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            FI   L+  YG     E A++ F  M        +  +N L+    + ++F +   +  
Sbjct: 450 LFI--ALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFD 507

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
                G   NS + NII+ G +G+GE D+A++VF  MI K  +    T+  +I   C  G
Sbjct: 508 RSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKG 567

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +L+ A  + + M  KR  P+  T+++L+ GLC  G   ++  ++ DM  +G +P    FG
Sbjct: 568 DLDGAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFG 627

Query: 449 KLRKLLIKEGREDVLKFLQEKM 470
            L   L + GR D  K L  +M
Sbjct: 628 VLMSDLGRRGRIDDXKTLLLEM 649


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 188/391 (48%), Gaps = 5/391 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P  V  ++    +A  LA   F+ A +Q  ++HS   YH++I  L + RQ++ M  L+
Sbjct: 98  LTPARVHKLIASQTDA-LLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLI 156

Query: 121 NAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
             MR          F  I+  Y  V    EA+  F+ M ++G       FN LL  L + 
Sbjct: 157 QQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEH 216

Query: 180 KNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
           K +  A  +F  + +  I P+++TY+IL+        L  A  +F +M   GC PD+ TY
Sbjct: 217 KCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETY 276

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I++  LC+  +V  ALG++  M +    P +  Y+ L+++   +  + +A     +M+ 
Sbjct: 277 SILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKV 336

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G   DV  YN +I  FC+  +  +  ++L+DM   G  PN+ +   ++NGL   G+ DE
Sbjct: 337 MGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDE 396

Query: 359 AYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A      MI          Y ++I   C  G++ +A +V   M  +   P   T+SVL+ 
Sbjct: 397 AKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLM 456

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +C+    +++  L++ + E   R S ET G
Sbjct: 457 RICEDS-QTEARELVDKLSEDDWRYSWETAG 486



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 145/301 (48%), Gaps = 2/301 (0%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI-LLEGWGKDPNLPRA 219
           G   + + ++ L+  L +++  +  + +   M+    P +    + ++E +G+      A
Sbjct: 128 GFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEA 187

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            + F +M++ G  P    + +++ VL +   ++ AL + K +      P +  Y++L+  
Sbjct: 188 IKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRA 247

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           +   +++  A   F +M K G + DV  Y+ L+   C+ ++ K    VL +M +KG  P+
Sbjct: 248 HCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPD 307

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           + T N +LN L  +    EAYR+  +M +  C  D   Y  +I  FC+ G    A ++ +
Sbjct: 308 ALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILR 367

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M     +P+  ++  L+NGLC++G   ++   +E+MI  G  P    +  L   L  EG
Sbjct: 368 DMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEG 427

Query: 459 R 459
           +
Sbjct: 428 K 428



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 9/292 (3%)

Query: 185 AQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           A EIF+    +  F     TY  L+   G+         + ++M   GC     T G+ V
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCP---YTPGLFV 172

Query: 243 DVLCKAGRV---DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           D++   G V   +EA+     M      P +  ++VL+        +E A+  F ++ + 
Sbjct: 173 DIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEF 232

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           GI  +   YN LI A C ++K  + Y +   M+ +G  P+  T +I++ GL  + +   A
Sbjct: 233 GISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTA 292

Query: 360 YRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             V   M+ K    DA TY  ++   C+   L +A+++   MK+    P +  ++ +I G
Sbjct: 293 LGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITG 352

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            C +G   D+C +L DM E G  P+  ++  L   L  EG+ D  K   E+M
Sbjct: 353 FCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEM 404


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 182/373 (48%), Gaps = 4/373 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +   V  Y S+I    K       +    A+  K  L+V ++  +++  A  ++++EA
Sbjct: 70  KRFRPDVFLYTSVIHGYCKAGDLDTGY--FRAVTPKASLDVISYTTVIKGLADSKRIDEA 127

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEG 209
              F  ++  G + N+ A+  ++  L K+  +    + F+ M     +P   TY+++++G
Sbjct: 128 CELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDG 187

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K   LP A ++F +MV  GC PD +TY  ++D   KA ++DEA  ++  M +    PT
Sbjct: 188 LCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 247

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           +  Y  +VH +   + I +A +   +M + G    + ++ +L+  +    + +  Y+VL 
Sbjct: 248 AVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLT 307

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
           +M ++G AP+      +++ L   G   EA  VF  MI K C  DA TY  +I+ F + G
Sbjct: 308 EMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIG 367

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +E A ++ + M      P    ++ L++G      V  +  + + M+  GI+P+  TF 
Sbjct: 368 NVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 427

Query: 449 KLRKLLIKEGRED 461
            L   L K+G+ D
Sbjct: 428 VLMHGLFKDGKTD 440



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 165/342 (48%), Gaps = 4/342 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  +++  K++EA    +VM   G       +  ++   CK   + +A+E+   M
Sbjct: 215 TYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 274

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++R   P    ++ LL  +        A ++  EM   GC PD++ Y  ++D+L   GRV
Sbjct: 275 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 334

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +  SM    C P +  Y  ++  +     +E A +    M K+G+  D   YN+L
Sbjct: 335 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSL 394

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           +  + K  +    + V   M + G+ PN+ T N++++GL   G+TD A+ +F+ M++  E
Sbjct: 395 MDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEE 454

Query: 372 ADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
                 +YT++I    + G + +AF  ++ M  +  IP  HT++ LI  L   G + ++ 
Sbjct: 455 VPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAK 514

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL-KFLQEKM 470
            L+EDM++ G+ P  + +  L   LI     D      QE M
Sbjct: 515 KLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMM 556



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 213/465 (45%), Gaps = 43/465 (9%)

Query: 54  LDQSGIRVSPEIV--EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           L+Q+  R  P++     V+  +  AG L   +F+    + + +  V +Y ++I+ LA  +
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLD--VISYTTVIKGLADSK 122

Query: 112 QYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +     +L   ++T     NV  +  ++    +  ++E+ +  F  M           + 
Sbjct: 123 RIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYT 182

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            ++  LCK++ +  A ++F+ M  +  +PD+ TY+ L++G+ K   +  AR++   M+  
Sbjct: 183 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 242

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  P  VTYG +V   CK   ++EA  ++  M    C P  FI++ L+  Y  + R E+A
Sbjct: 243 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEA 302

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT------- 342
                EM   G   DV +Y +LI       +      V   M  KG AP++ T       
Sbjct: 303 YQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 362

Query: 343 -------------------------C---NIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
                                    C   N +++G +     D+A+ V+ RM+    + +
Sbjct: 363 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 422

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLL 432
           A T+ +++    + G+ ++AF ++K M  K  +P ++ ++++LI+GL   G VS++ +  
Sbjct: 423 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQF 482

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           ++MI++GI P   T+  L   L K GR    K L E M  L   P
Sbjct: 483 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNP 527



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 160/354 (45%), Gaps = 33/354 (9%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            + ++  ++   A + K++EA   FN M   G   ++ AF  L+   CK+   +   ++ 
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLL 65

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNL---------PRAR-------------------- 220
           +    RF PD   Y+ ++ G+ K  +L         P+A                     
Sbjct: 66  NQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRID 125

Query: 221 ---EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              E+F E+   GC+P++V Y  ++D L KAGR+++ L   + M  + C PT   Y+V++
Sbjct: 126 EACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVI 185

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   + DA   F +M + G + D   Y  LI  F KA+K     ++L  M +KG  
Sbjct: 186 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 245

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P + T   I++G       +EA  V  +M  + CE     +T ++  +   G  E+A++V
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 305

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
              M  +   P +  ++ LI+ L   G V ++  + + MIEKG  P   T+G +
Sbjct: 306 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 359



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 3/246 (1%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYS 204
           +V EA + F+ M + G   +   +  ++    K  NV  A EI + M K    PD   Y+
Sbjct: 333 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYN 392

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DS 263
            L++G+ K   + +A  ++  MV +G  P+ VT+ +++  L K G+ D A  + K M + 
Sbjct: 393 SLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK 452

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               PT   Y++L+   G   R+ +A   F EM   GI+ +   Y +LI +  KA +   
Sbjct: 453 EEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPE 512

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             ++++DM   GV P+ +  + ++ GLI     D A+ VF+ M+K  C  +  TY ++ +
Sbjct: 513 AKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRR 572

Query: 383 MFCQGG 388
            F   G
Sbjct: 573 GFRAAG 578



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 2/224 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  I++ ++++  VE A     +M K GV  +  A+N L+    K + V +A  ++D M
Sbjct: 355 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 414

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDVLCKAGR 250
               I P++ T+++L+ G  KD    RA  +F+EM++     P +V+Y I++D L KAGR
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V EA    + M      P    Y+ L+++     RI +A     +M K G+  DV  Y+A
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           LI     ++     + V ++M  +G APN  T  ++  G    G
Sbjct: 535 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 578



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 13/253 (5%)

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC P IV+Y  ++  L    ++DEA     SM    C P    ++ L+H +    + +  
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR----TCNI 345
               L         DV +Y ++I  +CKA      Y        + V P +     +   
Sbjct: 62  -HKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYF-------RAVTPKASLDVISYTT 113

Query: 346 ILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++ GL      DEA  +F  +    C  +   YT +I    + G +E   K ++ M    
Sbjct: 114 VIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSS 173

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
            +P+  T++V+I+GLC   ++ D+C + E M++KG  P   T+  L     K  + D  +
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 465 FLQEKMNLLVKEP 477
            L + M     EP
Sbjct: 234 KLLDVMLTKGPEP 246



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNVM 157
           Y ++I++ +KI   +   +++  M  K  +  + F    +M  Y ++++V++A   ++ M
Sbjct: 356 YGTIIQNFSKIGNVEAAGEILELM-AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 414

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPN 215
              G+  N   FN L+  L K     +A  +F  M  K+   P   +Y+IL++G GK   
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A   F+EM+D G  P+  TY  ++  L KAGR+ EA  +V+ M      P    YS 
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+      + ++ A D F EM K G   +   Y  L   F  A +  ++   +K   S+G
Sbjct: 535 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDL-EAVKQHFSQG 593

Query: 336 VA 337
           VA
Sbjct: 594 VA 595


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 224/486 (46%), Gaps = 40/486 (8%)

Query: 3   KVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLD-TAL---DQSG 58
           K +H R K+  G           + S EA  AA+ I    LS+P   L+ TAL     S 
Sbjct: 114 KFHHGRQKLYMG-----------KHSPEADLAAQEI----LSAPSTPLNSTALLLEKWSH 158

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS----------MIESLA 108
             V  E    +L +  N G       +W    Q YE  V+  H           MI +L 
Sbjct: 159 QLVGLEDFPYLLRELGNRG-------EWERALQGYEWMVQQVHLRSEWSKLASIMISTLG 211

Query: 109 KIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           ++ + +I  D+ N A +     NV  +  ++  Y R  +  EA+  F  M+K G   NL 
Sbjct: 212 RLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLI 271

Query: 168 AFNGLLSALCKSK-NVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
            +N ++ A  K   ++++A +IFD M+   + PD  T++ L+    +      ++ +F E
Sbjct: 272 TYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAE 331

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M   G   DI T+  ++D +CK G+++ A  I+ +M      P    YS ++  YG    
Sbjct: 332 MQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGC 391

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            E+A+  + +M+++G+  D   YN LI  + K  +F +     KDM   G+  +  T N 
Sbjct: 392 FEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNA 451

Query: 346 ILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++    +G+  +A  +F +M  +    +  TY+ +I  + + G  +    V+   K   
Sbjct: 452 LIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAG 511

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             P +  +S LI+  C  G+V D+ VLL++M + GI+P+  T+  L     + G+ D L+
Sbjct: 512 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLE 571

Query: 465 FLQEKM 470
            ++  M
Sbjct: 572 AVKANM 577



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 157/346 (45%), Gaps = 43/346 (12%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  ++   +R    E++   F  MQ+ G+ Q++  FN L+ A+CK   +  A  I   M
Sbjct: 308 TFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTM 367

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           + + I P+  TYS +++G+GK      A  ++ +M ++G  PD V+Y  ++D+  K GR 
Sbjct: 368 RGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRF 427

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+AL   K M+    +     Y+ L+  YG + + +DA   F +M+  G++ +V  Y+AL
Sbjct: 428 DDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSAL 487

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I ++ KA   ++V  V  +    G+ P+    + +++     G  ++A  + + M +   
Sbjct: 488 IDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGI 547

Query: 371 EADADTYTMMIKMFCQGGELEK-------------------------------------- 392
           + +  TY  +I  + + G+ +K                                      
Sbjct: 548 QPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTG 607

Query: 393 ---AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              A  V+  M+     P++ TFS ++N       + ++ VLLE M
Sbjct: 608 VLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLEQM 653



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 48/259 (18%), Positives = 105/259 (40%), Gaps = 47/259 (18%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I++  K  +Y+    L + M+ + ++ NV T+  ++  Y++    ++    F 
Sbjct: 446 VVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFT 505

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK-- 212
             ++ G+  ++  ++ L+ + CK   V  A  +   M    I P+  TY+ L++ +G+  
Sbjct: 506 EFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYG 565

Query: 213 --------DPNLPR-------------------------------AREIFREMVDTGCNP 233
                     N+P                                A  +F EM   G  P
Sbjct: 566 QADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKP 625

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE-DAVDT 292
           ++VT+  +++   +   + EA  +++ M           + +L+   G+  ++  +A   
Sbjct: 626 NVVTFSAILNACSRCASLQEASVLLEQMRFFDGWVYGIAHGLLM---GLREQVWVEAQRL 682

Query: 293 FLEMEKNGILADVAMYNAL 311
           F E+ +       A YNAL
Sbjct: 683 FDEISRMDYATGAAFYNAL 701


>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
          Length = 556

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 207/463 (44%), Gaps = 28/463 (6%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF-CFFKW 86
           ST   D+A + +  +LS  +     +L  +GI   P + + +          A     +W
Sbjct: 11  STLPNDSAAAAASTVLSILRGEDPASLPAAGIDPCPAVFQQLRPSLPTVPDSALPALARW 70

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           A +            + +  LA    +   W L+ A  +     +  F  ++R+YAR+ +
Sbjct: 71  AGEA-----------TAVSLLASRGLFAAAWRLLLA-PSPTPPPLAAFAPLVRRYARLGR 118

Query: 147 VEEAVYTFNVMQK----YGVTQNLAAFNGLLS----ALCKSKNVRKAQEIFDCMKDR--- 195
              A+  F  +++    Y    ++ A   LL+    ALCK  + R A E+F+  +     
Sbjct: 119 APAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEGHPRAAVELFERWRREEPD 178

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             PD + Y+ILL GW +   L +  +++ EM   G  P +VTYG +++ LC   R D+A+
Sbjct: 179 SPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAI 238

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M            + +V+      R +DA     +    G+  +++ +N+L+  +
Sbjct: 239 ALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGY 298

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK         VLK M  +G++P +RT N          + +     + +MI      D 
Sbjct: 299 CKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQ 358

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++KM  +   LE   ++ + M+   F P + T ++LI+ LC +    ++C   ED
Sbjct: 359 LTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFED 418

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           M ++GI P   T+ KL + L + G   +++ +Q+  NL+   P
Sbjct: 419 MFKRGIVPQYITYQKLMRELKRLG---LVRLIQKLTNLMRSVP 458


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 175/377 (46%), Gaps = 9/377 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +  ++ S+AK++ Y  +  L   M +  +  +V T  I++  +  ++++  A      + 
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 174

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           K G   +   FN L+  LC    + +A  +FD  + + F PD  TY  L+ G  K  N  
Sbjct: 175 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 234

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  + R MV   C P+++ Y  ++D LCK  +V EA  +   M +    P  F Y+ L+
Sbjct: 235 AAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 294

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H        +       EM  + I+ +V +++ ++ A CK       + V+  M  +GV 
Sbjct: 295 HALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 354

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+  T   +++G   R E DEA +VF  M+ K C  +  +Y ++I  +CQ   ++KA  +
Sbjct: 355 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 414

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + M L+  I    T++ LI+GLC  G +  +  L  +M+  G  P   T+  L   L K
Sbjct: 415 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 474

Query: 457 EGREDVLKFLQEKMNLL 473
                    L E M LL
Sbjct: 475 N------HHLAEAMVLL 485



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 183/417 (43%), Gaps = 11/417 (2%)

Query: 16  ISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           +S   R     P    +D  K   SI+K+   S  + L T +D  GI      +  ++  
Sbjct: 97  LSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINS 156

Query: 73  FRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRM 128
           F +   L + F   A+  +   +     ++++I  L    KI +   ++D    +     
Sbjct: 157 FCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFD--KTIGEGFQ 214

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            +V T+  +M    +V     A+     M +     N+ A+N ++ +LCK + V +A  +
Sbjct: 215 PDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNL 274

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M  + I PD  TY+ L+              +  EMV++   P++V +  +VD LCK
Sbjct: 275 FSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 334

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G +  A  +V  M      P    Y+ L+  + + + +++AV  F  M   G + +V  
Sbjct: 335 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS 394

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI  +C+  +      +L+ M+ +G+  ++ T N +++GL   G    A  +F  M+
Sbjct: 395 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 454

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
              +  D  TY +++   C+   L +A  + K ++       +  +++ I+G+C  G
Sbjct: 455 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAG 511



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 139/279 (49%), Gaps = 2/279 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+N   +V AY+++I+SL K RQ    ++L + M TK +  ++ T+  ++     + + +
Sbjct: 245 QKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWK 304

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
                 N M    +  N+  F+ ++ ALCK   +  A ++ D M  R + PD  TY+ L+
Sbjct: 305 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 364

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G      +  A ++F  MV  GC P++ +Y I+++  C+  R+D+A+G+++ M      
Sbjct: 365 DGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLI 424

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
             +  Y+ L+H      R++ A+  F EM  +G + D+  Y  L+   CK +       +
Sbjct: 425 ADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVL 484

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           LK +    +  +    NI ++G+   GE + A  +F  +
Sbjct: 485 LKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 523



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 5/319 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + ++  V  Y +++  L K+        L+ +M  K    NV  +  I+    + ++V E
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLE 208
           A   F+ M   G++ ++  +N L+ ALC     +    + + M   + +P+   +S +++
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
              K+  +  A ++   M+  G  PD+VTY  ++D  C    +DEA+ +  +M    C P
Sbjct: 331 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP 390

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y++L++ Y    R++ A+    +M   G++AD   YN LI   C   + ++   + 
Sbjct: 391 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 450

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQ 386
            +M + G  P+  T  I+L+ L       EA  V  + I+    DAD   Y + I   C+
Sbjct: 451 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAM-VLLKAIEGSNLDADILVYNIAIDGMCR 509

Query: 387 GGELEKAFKVWKYMKLKRF 405
            GELE A  ++  +  + F
Sbjct: 510 AGELEAARDLFSNLSCQGF 528



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 119/243 (48%), Gaps = 2/243 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+S+I +L  + +++ +  L+N M  +K M NV  F  ++    +   +  A    +
Sbjct: 287 IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVD 346

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
           +M K GV  ++  +  L+   C    + +A ++FD M  +  +P+ ++Y+IL+ G+ +  
Sbjct: 347 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQ 406

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A  +  +M   G   D VTY  ++  LC  GR+  A+ +   M ++   P    Y 
Sbjct: 407 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 466

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+      + + +A+     +E + + AD+ +YN  I   C+A + +    +  +++ +
Sbjct: 467 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQ 526

Query: 335 GVA 337
           G A
Sbjct: 527 GFA 529



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 108/211 (51%), Gaps = 4/211 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYT 153
           +V  + +++++L K     I  D+V+ M  KR +  +V T+  +M  +    +++EAV  
Sbjct: 321 NVVVFSTVVDALCKEGMIAIAHDVVDMM-IKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 379

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGK 212
           F+ M   G   N+ ++N L++  C+ + + KA  + + M     I D+ TY+ L+ G   
Sbjct: 380 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 439

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L  A  +F EMV +G  PD+VTY I++D LCK   + EA+ ++K+++ +       +
Sbjct: 440 VGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILV 499

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           Y++ +        +E A D F  +   G  A
Sbjct: 500 YNIAIDGMCRAGELEAARDLFSNLSCQGFAA 530


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 174/355 (49%), Gaps = 6/355 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+S+I    + R+       +  M  +    ++ T+  ++  + + + V   +   
Sbjct: 143 TVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELL 202

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + + G T ++  ++ ++  LCK+  +R A +IF+ M     P + TY+ L+ G+ +  
Sbjct: 203 GEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRAG 260

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A  +  +MVD  C PD+VTY  ++   CK GR+D+A  + + M +    P    ++
Sbjct: 261 DMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFT 320

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV     E R+EDA++   E+ + G    +  YN ++  +CKAN+ +    ++ D  S+
Sbjct: 321 SLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSR 380

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELE 391
           G  PN+ T NI++ G    G TD+A +   ++      C      Y +++   C+ G  +
Sbjct: 381 GFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTD 440

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            A + ++ M  + ++P+  TF+ ++  LC       +  LLE+MI+ G  P   T
Sbjct: 441 DAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGT 495



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 161/317 (50%), Gaps = 5/317 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++   ++ +++ +AV     M       +      ++ +LC    V  A+E+ + M
Sbjct: 41  TYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 100

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R    ++ TYS L++G  K   L  A  +   M + GC P +VTY  ++   C+A RV
Sbjct: 101 LHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRV 160

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEA G ++ M +  C P    Y+ L+  +     +   ++   E+ + G   D+  Y+ +
Sbjct: 161 DEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTV 220

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I   CKA + ++   + ++M+    AP + T N ++ G    G+ DEA R+  +M+   C
Sbjct: 221 IDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKC 277

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TYT ++  FC+ G L+ A+++++ M   +  P + TF+ L++GLC +G + D+  
Sbjct: 278 APDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALE 337

Query: 431 LLEDMIEKGIRPSGETF 447
           LLE++  +G  P+  T+
Sbjct: 338 LLEEITRRGCPPTIYTY 354



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 186/372 (50%), Gaps = 9/372 (2%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +++SL    +     +LV  M  + M  N  T+  ++    + ++++EAV     M + G
Sbjct: 80  VVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERG 139

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
               +  +N +++  C+++ V +A    + M  +   PD  TY+ L+ G+ K  ++ R  
Sbjct: 140 CAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGL 199

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+  E+   G  PDIVTY  ++D LCKAGR+ +A+ I + M    C PT+  Y+ L+  Y
Sbjct: 200 ELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGY 256

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                +++A+    +M  +    DV  Y  L+ AFCK  +  + Y + + M +  ++P+ 
Sbjct: 257 CRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDV 316

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T   +++GL G G  ++A  +   + +  C     TY  ++  +C+  ++ KA ++   
Sbjct: 317 VTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVAD 376

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPSG-ETFGKLRKLLIKE 457
            + + F+P+  T+++L+ G C  G    +   L+ +  E G  P+    +  +   L ++
Sbjct: 377 FRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRD 436

Query: 458 GR-EDVLKFLQE 468
           GR +D ++F +E
Sbjct: 437 GRTDDAVQFYEE 448



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 165/335 (49%), Gaps = 5/335 (1%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KD 194
           +++    R  ++  A+  +  M       +   +  L+  L K++ +R A ++   M   
Sbjct: 10  VVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSA 68

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R +PD+ T +++++       +  ARE+  EM+  G   + +TY  +VD LCK  R+DEA
Sbjct: 69  RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 128

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + +V++M    C PT   Y+ ++  +    R+++A     +M   G   D+  Y ALIG 
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
           FCK+        +L ++  +G  P+  T + +++GL   G   +A  +F  M   C   A
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTA 246

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I  +C+ G++++A ++   M   +  P + T++ L++  C  G + D+  L + 
Sbjct: 247 ITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQ 306

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           M+   + P   TF  L   L  EGR ED L+ L+E
Sbjct: 307 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 341



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  +M  + ++ ++++A   F  M    ++ ++  F  L+  LC    +  A E+ 
Sbjct: 280 DVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELL 339

Query: 190 DCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +  R  P +  TY+ +++G+ K   + +A E+  +    G  P+ VTY I+V   C+A
Sbjct: 340 EEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRA 399

Query: 249 GRVDEALGIVKSMDST--VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           GR D+AL  +  ++S    C  +  +Y++++     + R +DAV  + EM + G +   A
Sbjct: 400 GRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAA 459

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
            +  ++ A CKA++ +  + +L++M   G  P   TC+ +++
Sbjct: 460 TFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVS 501



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 42/276 (15%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI-YSVLVHTYGVENRIEDAV 290
           NP  + + +++  LC+AGR+  ALG+ + M+     P  F+ Y+ LVH      R+ DAV
Sbjct: 2   NPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA--HPPDFLTYTKLVHGLSKARRLRDAV 59

Query: 291 DTFLEME-----------------------------------KNGILADVAMYNALIGAF 315
               EM                                      G+ A+   Y+AL+   
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK  +      +++ M  +G AP   T N I+ G       DEA+    +M+ + C  D 
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TYT +I  FC+  ++ +  ++   +  + F P + T+S +I+GLC  G + D+  + E+
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 239

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           M      P+  T+  L     + G  D    L  KM
Sbjct: 240 M---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKM 272


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 173/343 (50%), Gaps = 2/343 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T   ++  Y ++  V EA    + + + G++ +   +  L+   C++KNV  A  IF
Sbjct: 203 NIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIF 262

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M ++  + +  +Y+ L+ G+ +   +  A ++F +M +  C P + TY +++  LC+ 
Sbjct: 263 LSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQL 322

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR  EAL + K M    C+P    Y+VL+ +   ++  +DA      M + G++  V  Y
Sbjct: 323 GRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTY 382

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           NALI  +CK     +   +L  M S   +PN+RT N ++ G        +A  +  +M+ 
Sbjct: 383 NALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLE 442

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           +  + +  TY ++I   C+ G+L  A+K+   M     +P   T+SV I+ LC +G+V +
Sbjct: 443 RKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEE 502

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  L E + EKGI+ +   +  L     K G+    +FL +KM
Sbjct: 503 ARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 192/406 (47%), Gaps = 27/406 (6%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAK---IRQYQIMWDLV--------NAMRTKRM 128
           A  FF W  ++  ++H+V+++ SM+  L     +R  + M  L+        NA+    M
Sbjct: 93  ALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVLEM 152

Query: 129 L-------NVETFCIIMRKY-------ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           L       +   F + +R Y       +R   ++E    +  M    VT N+   N +++
Sbjct: 153 LRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVN 212

Query: 175 ALCKSKNVRKAQ-EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
             CK  NV +A+  +   ++     D+ TY+ L+ G+ ++ N+  A  IF  M + GC  
Sbjct: 213 GYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLR 272

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           + V+Y  ++   C+A RVDEAL +   M    C PT   Y+V++       R  +A++ F
Sbjct: 273 NEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMF 332

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            EM +     +V  Y  LI + C+ + F +  ++L  M  KG+ P+  T N +++G   +
Sbjct: 333 KEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKK 392

Query: 354 GETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G +  A  +   M    C  +A TY  +I  FC+G  + KA  +   M  ++  P++ T+
Sbjct: 393 GLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTY 452

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           ++LI+G C +G +  +  LL  M E G+ P   T+      L K G
Sbjct: 453 NILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRG 498



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 176/368 (47%), Gaps = 3/368 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +++ + +V  Y  +I SL +   +     ++N M  K ++ +V T+  ++  Y +     
Sbjct: 337 EKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSA 396

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   ++M+    + N   +N L+   C+ KN+ KA  +   M +R + P+  TY+IL+
Sbjct: 397 SALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K+ +L  A ++   M ++G  PD  TY + +D LCK G V+EA  + +S+     +
Sbjct: 457 HGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK 516

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
               IYS L+  Y    ++ D      +M   G + +   YN+LI  +CK   FK    +
Sbjct: 517 ANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLL 576

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           +  M  + + P + T  I+++ L+   E D+A+ +F +M+      D   YT  I  +C 
Sbjct: 577 VDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCS 636

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G L+ A  +   M  K  +P    +++ I+     G +  +  +L+ M E G  PS  T
Sbjct: 637 HGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYT 696

Query: 447 FGKLRKLL 454
           +  L K L
Sbjct: 697 YSCLIKHL 704



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 185/443 (41%), Gaps = 46/443 (10%)

Query: 75  NAGTLAFCFFKWAEKQQNYEH---------SVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           N   L FC  K   K  +  H         +V  Y+ +I    K       + L++ M  
Sbjct: 418 NELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNE 477

Query: 126 KRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             ++  E T+ + +    +   VEEA   F  +++ G+  N   ++ L+   CK   V  
Sbjct: 478 SGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSD 537

Query: 185 AQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
            + + D M     +P+S TY+ L++G+ K+ N   AR +   M+     P   TY I++D
Sbjct: 538 GRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILID 597

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            L K    D+A  +   M ST   P  FIY+  +H Y    R++DA     +M   GI+ 
Sbjct: 598 NLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMP 657

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL------------- 350
           D  +Y   I A+ +       + +LK M+  G  P+  T + ++  L             
Sbjct: 658 DTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSE 717

Query: 351 -------IGRGETDEAYR---------VFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
                  +   +    +R         +F +M +  C  +A+TY   I   C+ G LE A
Sbjct: 718 LSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVA 777

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +++ +MK K   P+   ++ L+   C  G+  ++   L+ MIE    P  ++   L   
Sbjct: 778 HRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCG 837

Query: 454 LIKEGREDVLK-----FLQEKMN 471
           L  EG ++  K     FLQ + N
Sbjct: 838 LYDEGNDEKAKRVFCSFLQCEYN 860



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 148/355 (41%), Gaps = 36/355 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN--VETFCIIMRKYARVQKVEEAVYTFNV 156
            Y+S+I+   K + ++    LV+ M  KR +    +T+ I++    +  + ++A   F+ 
Sbjct: 556 TYNSLIDGYCKEKNFKEARLLVDIM-IKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQ 614

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G   ++  +   + A C    ++ A+ +   M  + I PD+  Y++ ++ +G+  +
Sbjct: 615 MLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGS 674

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-------------------------- 249
           +  A  I + M + GC P   TY  ++  L  A                           
Sbjct: 675 IDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCW 734

Query: 250 -RVDE--ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            RVD    L +   M    C P +  Y   +        +E A   F  M++ G   +  
Sbjct: 735 RRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNED 794

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +YN+L+G  C+   +    R L  M      P+  +C ++L GL   G  ++A RVF   
Sbjct: 795 IYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSF 854

Query: 367 IKLCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++ CE + D   + ++I    + G  +K   ++  M+ +       T+S+LI G 
Sbjct: 855 LQ-CEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 187/392 (47%), Gaps = 6/392 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K  + E S+  ++++++ L K    +   +++  M+    + +  TF I+   Y+  +K 
Sbjct: 276 KADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKA 335

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC-MKDRFIPDSKTYSIL 206
           E A+  +      GV  N    + LL+ALCK   + KA+EI    M    +P+   Y+ +
Sbjct: 336 EAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTM 395

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+ +  +L  AR     M   G  PD + Y  ++   C+ G ++ A   V  M     
Sbjct: 396 IDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGV 455

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P+   Y++L+  YG +   +   D   EME NG + +V  Y  LI   CK +K      
Sbjct: 456 SPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQI 515

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           V +DM  +GV+P  R  N++++G   +G+ ++A+R  + M+K   E +  TY  +I    
Sbjct: 516 VKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLS 575

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G+L +A  +   +  K   P + T++ LI+G    G V     L E+M   GI+P+ +
Sbjct: 576 MTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLK 635

Query: 446 TFGKLRKLLIKEGREDVLKFLQE---KMNLLV 474
           T+  L  L  KEG E   +   E   K +LLV
Sbjct: 636 TYHLLISLCTKEGIELTERLFGEMSLKPDLLV 667



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 174/357 (48%), Gaps = 3/357 (0%)

Query: 103 MIESLAKIRQYQIMWDL-VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +++ L K +Q+++  ++ +N + +    +   +   ++   ++  V + +  FN M+   
Sbjct: 150 LLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR 209

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           +  ++  +N L+  LCK K +  A+++FD M   R +P   TY+ L++G+ K  N  ++ 
Sbjct: 210 IYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSF 269

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           ++   M      P ++T+  ++  L KAG V++A  ++K M      P +F +S+L   Y
Sbjct: 270 KVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGY 329

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
               + E A+  +     +G+  +    + L+ A CK  K +    +L    +KG+ PN 
Sbjct: 330 SSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNE 389

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
              N +++G   +G+   A      M K   + D   Y  +I+ FC+ GE+E A K    
Sbjct: 390 VIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNK 449

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           MKLK   PS+ T+++LI G   K        +L++M + G  P+  ++G L   L K
Sbjct: 450 MKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCK 506



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 171/356 (48%), Gaps = 7/356 (1%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145
           A ++Q  +    AY+ +I    ++ + +     VN M+ K +  +VET+ I++  Y R  
Sbjct: 414 AMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKY 473

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           + ++       M+  G   N+ ++  L++ LCK   + +AQ +   M+DR + P  + Y+
Sbjct: 474 EFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYN 533

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L++G      +  A    +EM+  G   ++VTY  ++D L   G++ EA  ++  +   
Sbjct: 534 MLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRK 593

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P  F Y+ L+  YG    ++  +  + EM+++GI   +  Y+ LI + C     +  
Sbjct: 594 GLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI-SLCTKEGIELT 652

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKM 383
            R+  +M+ K   P+    N +L+     G+ ++A+ + ++MI K    D  TY  +I  
Sbjct: 653 ERLFGEMSLK---PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG 709

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
             + G+L +   +   M  +   P   T+++++ G C+      + V   +M EKG
Sbjct: 710 QLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKG 765



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 139/298 (46%), Gaps = 2/298 (0%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSI 205
           + EA   F  ++  G+  +  +   LL  L K+K  R    +F + ++  F P    Y  
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 184

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
            ++   K  ++ +  E+F  M      P +  Y +++D LCK  R+++A  +   M +  
Sbjct: 185 AIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARR 244

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P+   Y+ L+  Y      E +      M+ + I   +  +N L+    KA   ++  
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
            VLK+M   G  P++ T +I+ +G     + + A  V+   +    + +A T ++++   
Sbjct: 305 NVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNAL 364

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           C+ G++EKA ++      K  +P+   ++ +I+G C KG +  + + +E M ++G++P
Sbjct: 365 CKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKP 422



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 129/275 (46%), Gaps = 3/275 (1%)

Query: 172 LLSALC-KSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           LLS L  +SK + +A ++F  +++  I P S + ++LL+   K         +F  ++++
Sbjct: 114 LLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILES 173

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
              P    YG  +    K   V + L +   M      P+ FIY+VL+       R+ DA
Sbjct: 174 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F EM    +L  +  YN LI  +CKA   +  ++V + M +  + P+  T N +L G
Sbjct: 234 EQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKG 293

Query: 350 LIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   G  ++A  V + M  L    DA T++++   +    + E A  V++         +
Sbjct: 294 LFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMN 353

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            +T S+L+N LC +G +  +  +L   + KG+ P+
Sbjct: 354 AYTCSILLNALCKEGKIEKAEEILGREMAKGLVPN 388



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 1/215 (0%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y ++  +L ++  + EA  +  ++ +    P+S   ++L+       +    ++ FL +
Sbjct: 111 SYLLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNI 170

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            ++       MY   I A  K +       +   M    + P+    N++++GL      
Sbjct: 171 LESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRM 230

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           ++A ++F  M+ +       TY  +I  +C+ G  EK+FKV + MK     PS+ TF+ L
Sbjct: 231 NDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTL 290

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + GL   G+V D+  +L++M + G  P   TF  L
Sbjct: 291 LKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSIL 325



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 118/256 (46%), Gaps = 5/256 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           AF F K   K+   E ++  Y+++I+ L+   +     DL+  +  K +  +V T+  ++
Sbjct: 548 AFRFSKEMLKK-GIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLI 606

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP 198
             Y     V+  +  +  M++ G+   L  ++ LL +LC  + +   + +F  M  +  P
Sbjct: 607 SGYGFAGNVQRCIALYEEMKRSGIKPTLKTYH-LLISLCTKEGIELTERLFGEMSLK--P 663

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D   Y+ +L  +    ++ +A  + ++M++     D  TY  ++    K G++ E   ++
Sbjct: 664 DLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLI 723

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M++    P +  Y+++V  +        A   + EM++ G L DV + N L+    + 
Sbjct: 724 DEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEE 783

Query: 319 NKFKNVYRVLKDMNSK 334
            + K    V+ +MN +
Sbjct: 784 WRSKEAEIVISEMNGR 799



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 98/250 (39%), Gaps = 21/250 (8%)

Query: 244 VLCKAGRVDEALGIVKSM---DST-------------VCRPT---SFIYSVLVHTYGVEN 284
           VL +  R++ A G++ S+   DST             +  P+    F Y +L        
Sbjct: 64  VLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLSVLLNESK 123

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            I +A D F  +   GI         L+    K  +F+    V  ++      P+     
Sbjct: 124 MISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYG 183

Query: 345 IILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
             +   +   +  +   +F RM           Y ++I   C+G  +  A +++  M  +
Sbjct: 184 KAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLAR 243

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
           R +PS+ T++ LI+G C  G    S  + E M    I PS  TF  L K L K G  ED 
Sbjct: 244 RLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDA 303

Query: 463 LKFLQEKMNL 472
              L+E  +L
Sbjct: 304 ENVLKEMKDL 313



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT----YTMMIKMFCQ 386
           + ++G+ P+S +  ++L+ L+   +      VF   + + E+D       Y   I+   +
Sbjct: 135 LRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVF---LNILESDFRPSKFMYGKAIQAAVK 191

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             ++ K  +++  MK  R  PS+  ++VLI+GLC    ++D+  L ++M+ + + PS  T
Sbjct: 192 LSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLIT 251

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           +  L     K G  +    ++E+M     EP
Sbjct: 252 YNTLIDGYCKAGNPEKSFKVRERMKADHIEP 282


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 183/377 (48%), Gaps = 5/377 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y  ++E++ +   ++    +++ MR K    N+ T+ +I+    R  +V++A  
Sbjct: 175 QPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 234

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             N +  YG   +  ++  LL  LC SK     +E+F + M+   +P+  T+ +L+  + 
Sbjct: 235 LLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFC 294

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   + RA ++  +M + GC  +     I+++ +CK GRVD+A  ++  M S  C P + 
Sbjct: 295 RGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTI 354

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++       R +DA +   EM +N    +   +N  I   C+    +    +++ M
Sbjct: 355 SYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 414

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
           +  G      T N ++NG   +G  D A  +FR M   C+ +  TYT ++   C    L+
Sbjct: 415 SEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNAERLD 472

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++   M      P++ TF+VL++  C KG + ++  L+E M+E G  P+  T+  L 
Sbjct: 473 GAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLL 532

Query: 452 KLLIKE-GREDVLKFLQ 467
             + K+   ED L+ L 
Sbjct: 533 DGITKDCSSEDALELLH 549



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 145/302 (48%), Gaps = 2/302 (0%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           V  +   +  L+  LC    V  A  + D M  R   P+  TY++LLE   ++    +A 
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +  EM   GC P+IVTY ++++ +C+ GRVD+A  ++  + S   +P +  Y+ L+   
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGL 258

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
               R +D  + F EM +   + +   ++ LI  FC+    +   +VL+ M   G A N+
Sbjct: 259 CASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNT 318

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
             CNI++N +  +G  D+A+++   M    C  D  +YT ++K  C+    + A ++   
Sbjct: 319 TLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNE 378

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M      P+  TF+  I  LC KG++  + +L+E M E G      T+  L      +G 
Sbjct: 379 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGH 438

Query: 460 ED 461
            D
Sbjct: 439 ID 440



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 154/336 (45%), Gaps = 3/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R   R  +  +A       +  G   ++ A+N L++  C+  ++  A+ +   M    
Sbjct: 82  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP--V 139

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ TY+ L+        +  A  +  +M+  GC P++VTY ++++ +C+    ++A+ 
Sbjct: 140 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMA 199

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M +  C P    Y+V+++    E R++DA +    +   G   D   Y  L+   C
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLC 259

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
            + ++ +V  +  +M  K   PN  T ++++      G  + A +V  +M +  C  +  
Sbjct: 260 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTT 319

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              ++I   C+ G ++ AFK+   M      P   +++ ++ GLC      D+  LL +M
Sbjct: 320 LCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEM 379

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +     P+  TF     +L ++G  +    L E+M+
Sbjct: 380 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETF----CIIMRKYARVQKVEEAVYT 153
           +Y ++++ L +  ++    +L+N M R     N  TF    CI+ +K      +E+A+  
Sbjct: 355 SYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQK----GLIEQAIML 410

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
              M ++G T  +  +N L++  C   ++  A E+F  M  +  P++ TY+ LL G    
Sbjct: 411 IEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--PNTITYTTLLTGLCNA 468

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+  EM+   C P++VT+ ++V   C+ G ++EA+ +V+ M    C P    Y
Sbjct: 469 ERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITY 528

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+     +   EDA++    +   G+  DV  ++++IG   K ++ +   ++   +  
Sbjct: 529 NTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQD 588

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G+ P +   N IL GL  R E D A   F  M+   C  +  TY ++I+     G L++
Sbjct: 589 IGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKE 648

Query: 393 A 393
           A
Sbjct: 649 A 649



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 68/306 (22%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDST---------------VCR---------- 267
           PD+     ++  LC+ GR  +A  ++++ + +                CR          
Sbjct: 74  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 133

Query: 268 -------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
                  P ++ Y+ L+       R+ DA+    +M + G   +V  Y  L+ A C+ + 
Sbjct: 134 IGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSG 193

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR--------------- 365
           F+    VL +M +KG  PN  T N+I+NG+   G  D+A  +  R               
Sbjct: 194 FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTT 253

Query: 366 ---------------------MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
                                M K C  +  T+ M+I+ FC+GG +E+A +V + M    
Sbjct: 254 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG 313

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
              +    +++IN +C +G V D+  LL DM   G  P   ++  + K L +  R D  K
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373

Query: 465 FLQEKM 470
            L  +M
Sbjct: 374 ELLNEM 379



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 7/252 (2%)

Query: 90  QQNYEHS----VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           +Q  EH     V  Y++++             +L  +M  K   N  T+  ++      +
Sbjct: 412 EQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKP--NTITYTTLLTGLCNAE 469

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           +++ A      M +     N+  FN L+S  C+   + +A E+ + M +    P+  TY+
Sbjct: 470 RLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYN 529

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            LL+G  KD +   A E+   +V  G +PD++T+  ++ +L K  R++EA+ +   +   
Sbjct: 530 TLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             RP + +Y+ ++        I++A+D F  M  NG + + + Y  LI         K  
Sbjct: 590 GMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649

Query: 325 YRVLKDMNSKGV 336
             +L  + S+GV
Sbjct: 650 QDLLSVLCSRGV 661



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G AP+   C  ++  L  RG T +A RV R         D   Y  ++  +C+ G L+ A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            ++   M +    P  +T++ LI  LCD+G V+D+  LL+DM+ +G +P+  T+  L + 
Sbjct: 131 RRLIGSMPVA---PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 187

Query: 454 LIK-EGREDVLKFLQE 468
           + +  G E  +  L E
Sbjct: 188 MCRNSGFEQAMAVLDE 203


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 186/383 (48%), Gaps = 4/383 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
            +N   +V  Y  +I+ L K  +      L++ MR K +    T+  ++    + ++  E
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASE 133

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A      M   G   ++  +  L++  CKSK    A  +F+ +  R F PD  TYS L++
Sbjct: 134 AYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLID 193

Query: 209 GWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           G  K+  L  A ++F  M+ +G C P+ VTY  ++   C+ G++DEA+ +++ M  T   
Sbjct: 194 GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 253

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++ +    R++DA D   +M + G+  DV  + +L+   C+ N+  +   +
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHI 313

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
           L +M  K  +P   T N IL+G     + +EA +     +  C  +  ++ +MI+  C+ 
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD-CPPNVVSFNIMIRGLCKV 372

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-GIRPSGET 446
               +A ++ +  + +R  P +  ++ +I+GLC +  V ++C +   M+E+ G  P+  T
Sbjct: 373 NRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSIT 432

Query: 447 FGKLRKLLIKEGREDVLKFLQEK 469
           +  L   L   G  D  +   EK
Sbjct: 433 YSTLVTGLCNAGMLDRARGYIEK 455



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 158/325 (48%), Gaps = 3/325 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I+ L K+++ +     +  M +K    +V T+  ++       ++ EA      M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
               +T N+  +  L+  LCK   V +A  +   M+ + +P + TY+ L+ G  K     
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++  EMV +GC PDI TY  ++   CK+ + D+AL + + + +   RP    YS L+
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 278 HTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                E R+++A+D F  M K+G  + +   YN+LI  FC+  K      +L+ M   G 
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           +P+  T   ++NG       D+AY +  +M  K    D  T+T ++   C+   L  A  
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLC 420
           +   M+ K   P+++T++ +++G C
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYC 337



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 170/343 (49%), Gaps = 5/343 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +++   +V+++E+A+     M   G   ++  +  ++ ALC    + +A++  + M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +R   P+  TY++L++G  K   +  A  +  +M    C P  VTY  ++  LCKA R 
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERA 131

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +++ M  + C P  F Y+ L+  +    + +DA+  F ++   G   DV  Y+ L
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 312 IGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           I   CK  + K    +   M  S    PN+ T N +++G    G+ DEA  +  RM +  
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 371 EA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            + D  TYT ++  FC+   L+ A+ +   M  K   P + TF+ L++GLC +  +SD+ 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            +L +M  K   P+  T+  +     +  + E+  KF+ E+M+
Sbjct: 312 HILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD 354



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 142/308 (46%), Gaps = 39/308 (12%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD------------------------ 234
           D  TY+ L++G  K   L +A     +MV  G +PD                        
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 235 -----------IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
                      +VTY +++D LCK GRVDEA+ ++  M    C PT+  Y+ L+      
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKA 128

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            R  +A D   EM  +G + D+  Y  LI  FCK+ K  +  RV + + ++G  P+  T 
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 344 NIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           + +++GL   G   EA  +F RMIK   C  +  TY  +I  FC+ G++++A  + + M 
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-E 460
                P + T++ L+NG C    + D+  LL  M  KG+ P   TF  L   L +E R  
Sbjct: 249 ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLS 308

Query: 461 DVLKFLQE 468
           D +  L E
Sbjct: 309 DAVHILGE 316



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 9/245 (3%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C+ D VTY  ++  LCK  R+++AL  +  M S    P  + Y+ ++H   VENR+ +A 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               EM    +  +V  Y  LI   CK  +      +L  M  K V P + T N +++GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                  EAY +   M+   C  D  TYT +I  FC+  + + A +V++ +  + F P +
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            T+S LI+GLC +G + ++  L   MI+ G   P+  T+  L     + G+ D      E
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD------E 239

Query: 469 KMNLL 473
            MNLL
Sbjct: 240 AMNLL 244



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 17/246 (6%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++    K+ +    +DL+N M  K +  +V TF  +M    R  ++ +AV+   
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ----EIFDCMKDRFIPDSKTYSILLEGWG 211
            M++   +  +  +N +L   C++  + +A+    E  DC      P+  +++I++ G  
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC-----PPNVVSFNIMIRGLC 370

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTS 270
           K      A E+  E     CNPD+V Y  ++D LC+  +VDEA  + + M +   C P S
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 271 FIYSVLVHTYGVENR-IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             YS LV   G+ N  + D    ++E    G + ++  YN LI AF KAN+ ++   +L 
Sbjct: 431 ITYSTLVT--GLCNAGMLDRARGYIE---KGCVPNIGTYNLLIDAFRKANRDEDARELLD 485

Query: 330 DMNSKG 335
           DM  +G
Sbjct: 486 DMVQRG 491


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 186/392 (47%), Gaps = 10/392 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKI-RQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           AF   K  ++++    +V  Y ++++ L K  R  + M  L   +       ++T+ +++
Sbjct: 61  AFQLLKKMDEKKCLPTTV-TYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVI 119

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
              ++  +VEEA   F  M   G   +   +  L+  LCKS    +A  ++     R   
Sbjct: 120 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHH 179

Query: 196 --FIPDSKTYSILLEGWGKDPNLPRAREIF-REMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
              +PD  TY+ L++G  K   +  AR++F  E V+ G  PD VTY  ++D LCK GRV+
Sbjct: 180 ATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE 239

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           E       M +    P +  Y+ L+  +     I  A   + +M ++G +     YN ++
Sbjct: 240 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIIL 299

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
              CKA +    Y     M  +G      T + +++G    G    A  +FRRM+ + CE
Sbjct: 300 DGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCE 359

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSDSCV 430
            +  +Y ++I+  C+ G+L KA+  ++ +  +R  P ++TF+  ++GLC +   VSD   
Sbjct: 360 PNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVE 419

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           L E M+ +G  P+  ++  L   + + G  +V
Sbjct: 420 LFESMVSQGTSPNLHSYSILMDGICRAGGLEV 451



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 6/259 (2%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD   +++++ G  ++  L  A  +    V  GC PD VTY + +D LCKA RVD+A  +
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +K MD   C PT+  Y+ LV       R+++A+    +M + G    +  Y  +I    K
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-----RRMIKLCEA 372
           A + +   R+  DM   G  P++     ++ GL   G+ +EAY ++     R+       
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIPSMHTFSVLINGLCDKGIVSDSCVL 431
           D  TYT +I   C+ G + +A +V+    ++R FIP   T++ +I+GLC  G V + C  
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244

Query: 432 LEDMIEKGIRPSGETFGKL 450
             +M  +G  P   T+  L
Sbjct: 245 FHEMRNRGYEPDAVTYAAL 263



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 183/382 (47%), Gaps = 10/382 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKR-----MLNVETFCIIMRKYARVQKVEEAVYTF 154
           Y ++I+ L K  + +  + L      ++     + +V T+  ++    +  ++ EA   F
Sbjct: 150 YTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVF 209

Query: 155 N-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGK 212
           +    + G   +   +  ++  LCK   V +  E F  M++R + PD+ TY+ L++G+ K
Sbjct: 210 DDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMK 269

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +P+A  ++R+M+ +G     VTY I++D LCKAGRV EA     +M+   C  T   
Sbjct: 270 AKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVT 329

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS L+  +  E  +  AV+ F  M   G   ++  YN +I   C+A K    Y   + + 
Sbjct: 330 YSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLL 389

Query: 333 SKGVAPNSRTCNIILNGLIGRGET-DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
            + + P+  T N  L+GL  R +T  +   +F  M+ +    +  +Y++++   C+ G L
Sbjct: 390 QRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGL 449

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E A ++++ M  +   P +  F+ LI  LC  G V ++  +  ++ E+   P   ++  L
Sbjct: 450 EVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSL 508

Query: 451 RKLLIKEGREDVLKFLQEKMNL 472
              L +  R +  + L   M L
Sbjct: 509 LDGLSRCERMEEARLLSFHMKL 530



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 7/333 (2%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            F +++    R ++++EA        + G   +   +N  +  LCK++ V  A ++   M
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++  +P + TY+ L++G  K   L  A  +  +MV+ G +P + TY +++D L KAGRV
Sbjct: 69  DEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRV 128

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM----EKNGILADVAM 307
           +EA  I   M    CRP +F+Y+ L+       + E+A   + E          + DV  
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVT 188

Query: 308 YNALIGAFCKANKFKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           Y +LI   CKA +     +V  D    +G  P++ T   I++GL   G  +E    F  M
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
             +  E DA TY  +I  F +   + KA +V++ M     + S  T++++++GLC  G V
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 308

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +++      M E+G   +  T+  L      EG
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEG 341



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 161/320 (50%), Gaps = 7/320 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I+ L K+ + +   +  + MR +    +  T+  ++  + + + + +A   +  M 
Sbjct: 225 YTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQML 284

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           + G   +   +N +L  LCK+  V +A   F  M++R  +    TYS L++G+  + N+ 
Sbjct: 285 QSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVS 344

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+FR M+D GC P++V+Y I++  LC+AG++ +A    + +      P  + ++  +
Sbjct: 345 AAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFL 404

Query: 278 HTYGVENRIE---DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           H  G+  R++   D V+ F  M   G   ++  Y+ L+   C+A   +    + ++M S+
Sbjct: 405 H--GLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSR 462

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
           GVAP+    N ++  L   G  DEA  VFR + +    DA +Y  ++    +   +E+A 
Sbjct: 463 GVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDGLSRCERMEEAR 522

Query: 395 KVWKYMKLKRFIPSMHTFSV 414
            +  +MKL+   P  +  +V
Sbjct: 523 LLSFHMKLQGCAPRHYDLTV 542



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C+PD+V + ++++ LC+  R+DEA  +++      C P    Y+V +       R++DA 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               +M++   L     Y AL+    KA +      VL+ M  KG +P  +T  ++++GL
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF---- 405
              G  +EA R+F  M+   C  DA  YT +IK  C+ G+ E+A+ ++K    ++     
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 406 IPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +P + T++ LI+GLC  G I+    V  ++ +E+G  P   T+  +   L K GR
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGR 237



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D+  +  +I   C+  +    + VL+     G  P+  T N+ ++GL      D+A+++ 
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
           ++M  K C     TYT ++    + G L++A  V + M  K   P++ T++V+I+GL   
Sbjct: 66  KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKA 125

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           G V ++  +  DM+  G RP    +  L K L K G+ +    L ++ N
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEAN 174


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 181/368 (49%), Gaps = 38/368 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + R  K++E+   + +M K     N+ ++N  +  L +++ V +A  +++ +
Sbjct: 327 TYNALLNGFCRAGKIKESFELWVMMGKEN-CHNVVSYNIFIRGLFENRKVEEAISVWELL 385

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           + R    DS TY +L+ G  K+ +L +A +I +E  D G   D   Y  +VD L K GRV
Sbjct: 386 RRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRV 445

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEALGIV  MD   C  +  + + L++ +   +++E+A+  F EME  G    V  YN L
Sbjct: 446 DEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTL 505

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLC 370
           I   CKA +F + Y  +K+M  K   P+  T +++++GL    + D A  ++R+ ++K  
Sbjct: 506 INGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGL 565

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT------------------- 411
           E D   + +++   C  G++E A  ++  MK    +P++ T                   
Sbjct: 566 EPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASV 625

Query: 412 ----------------FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
                           +++ + GLC  G +SD   L +D ++ GI P+  T+  L + ++
Sbjct: 626 IWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVL 685

Query: 456 KEGREDVL 463
           K G  D L
Sbjct: 686 KLGPLDSL 693



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 186/421 (44%), Gaps = 39/421 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IM 138
           A   F  A +Q  Y HS   +  ++  L+  +    +  +V  ++T++    E   + ++
Sbjct: 26  ALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTRIVELIKTQKCKCTEDVVLTVL 85

Query: 139 RKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIF-------- 189
           + YA+ +   EA+  F  M++ +G    + ++N LL+A  ++  + KA+           
Sbjct: 86  KAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGI 145

Query: 190 -------------DCMKDRFI---------------PDSKTYSILLEGWGKDPNLPRARE 221
                           K +F+               PD  +Y  ++ G  K  +L  A E
Sbjct: 146 LPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALE 205

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTY 280
           +F EM + G  PD++ Y IM+D   K G   +   I + +    C  P    Y+V+++  
Sbjct: 206 VFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGL 265

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
               R +++++ +  M+KN    D+  Y++LI   C          V K+M  + V  + 
Sbjct: 266 CKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDV 325

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
            T N +LNG    G+  E++ ++  M K    +  +Y + I+   +  ++E+A  VW+ +
Sbjct: 326 VTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELL 385

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           + +       T+ VLI+GLC  G ++ +  +L++  + G +     +  +   L K+GR 
Sbjct: 386 RRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRV 445

Query: 461 D 461
           D
Sbjct: 446 D 446



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 204/474 (43%), Gaps = 54/474 (11%)

Query: 16  ISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSP-EIVEDVLEKFR 74
           ++ L+ Y  S+   EALD  + + +I    P +    AL  + I  +  E  E  L  F 
Sbjct: 82  LTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFE 141

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVET 133
             G L                +++ Y+ +I+   K RQ+     L++ M +K +  +V +
Sbjct: 142 TVGILP---------------NLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYS 186

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CM 192
           +  ++    +   +  A+  F+ M + G+  ++  +N ++    K  +  + +EI++  +
Sbjct: 187 YGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLV 246

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K   + P+  TY++++ G  K      + E++  M    C  D+ TY  ++  LC  G V
Sbjct: 247 KGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNV 306

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTY----------------GVEN----------- 284
           D A+ + K M           Y+ L++ +                G EN           
Sbjct: 307 DGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFI 366

Query: 285 -------RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                  ++E+A+  +  + + G  AD   Y  LI   CK        ++LK+    G  
Sbjct: 367 RGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDK 426

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
            ++   + I++GL  +G  DEA  +  +M K  CE        +I  F +  +LE+A   
Sbjct: 427 LDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICF 486

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++ M+ K   P++ +++ LINGLC     SD+   +++M+EK  +P   T+  L
Sbjct: 487 FREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLL 540



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 2/261 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY S+++ L+K  +      +V+ M +    L+      ++  + R  K+EEA+  F  M
Sbjct: 431 AYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREM 490

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +  G +  + ++N L++ LCK++    A      M ++ + PD  TYS+L++G  +   +
Sbjct: 491 ETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKI 550

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++R+++  G  PD+  + I++  LC AG++++AL +  +M  + C P    ++ L
Sbjct: 551 DMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTL 610

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +         E A   +  M KNG   D+  YN  +   C   +  +   +  D    G+
Sbjct: 611 MDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNGI 670

Query: 337 APNSRTCNIILNGLIGRGETD 357
            P S T  I++  ++  G  D
Sbjct: 671 LPTSITWYILVRAVLKLGPLD 691



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 114/241 (47%), Gaps = 1/241 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+   +  I+   ++  +V+EA+   + M KYG   +    N L++   ++  + +A   
Sbjct: 427 LDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICF 486

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M+ +   P   +Y+ L+ G  K      A    +EM++    PD++TY +++D LC+
Sbjct: 487 FREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQ 546

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
             ++D AL + + +      P   ++++L+H      +IEDA+  +  M+++  L ++  
Sbjct: 547 GKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVT 606

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           +N L+    KA + +    +   M   G  P+  + NI L GL   G   +   +F   +
Sbjct: 607 HNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDAL 666

Query: 368 K 368
           K
Sbjct: 667 K 667


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 6/367 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV-EEAVYTF 154
           VRAY +++ +L++  +Y+   +L   +R + +   + T+ +++  Y R+ +     V   
Sbjct: 173 VRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALL 232

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           + M+  GV  +    + +++A C+   V +A   F+ +K R   P   TY+ LL+ +GK 
Sbjct: 233 DEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKA 292

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  + +EM   GC PD VTY  +     +AG  +EA   + +M S    P +F Y
Sbjct: 293 GNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTY 352

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  YG   ++++A+  F +M+K+G + +V  YN ++G   K ++F  +  +L +M+ 
Sbjct: 353 NTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSR 412

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELE 391
            G  PN  T N +L     RG  D   RV   M K C  E   DTY  +I  + + G   
Sbjct: 413 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM-KSCGVELSRDTYNTLIAAYGRCGSRT 471

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AFK++  M    F P + T++ L+N L  +G  S +  ++  M  KG +P+ +++  L 
Sbjct: 472 NAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLL 531

Query: 452 KLLIKEG 458
           +   K G
Sbjct: 532 QCYAKGG 538



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 137/312 (43%), Gaps = 36/312 (11%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK-DPNLPR 218
           G   ++ A+  +L AL ++    +A E+F  ++ + + P   TY+++L+ +G+   + PR
Sbjct: 168 GSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPR 227

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
              +  EM   G  PD  T   ++   C+ G VDEA+   + + +    P    Y+ L+ 
Sbjct: 228 IVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQ 287

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +G      +A+    EME++G   D   YN L G + +A  ++   + L  M SKG+ P
Sbjct: 288 VFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLP 347

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           N                                  A TY  ++  +   G++++A  ++ 
Sbjct: 348 N----------------------------------AFTYNTVMTAYGNIGKVDEALALFD 373

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            MK    +P+++T++ ++  L  K   +    +L +M   G  P+  T+  +  +  K G
Sbjct: 374 QMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG 433

Query: 459 REDVLKFLQEKM 470
            ED +  + E M
Sbjct: 434 MEDYVTRVLEGM 445



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/449 (21%), Positives = 186/449 (41%), Gaps = 50/449 (11%)

Query: 69  VLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           +L+ F  AG  T A    K  E Q   +     Y+ +  + A+   Y+     ++ M +K
Sbjct: 285 LLQVFGKAGNYTEALRVLKEME-QDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSK 343

Query: 127 RML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
            +L N  T+  +M  Y  + KV+EA+  F+ M+K G   N+  +N +L  L K       
Sbjct: 344 GLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVM 403

Query: 186 QEIFD------CMKDRFIPDS------------------------------KTYSILLEG 209
            E+        C  +R   ++                               TY+ L+  
Sbjct: 404 LEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAA 463

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           +G+  +   A +++ EM   G  P + TY  +++VL + G    A  IV  M +   +P 
Sbjct: 464 YGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPN 523

Query: 270 SFIYSVLVHTYGVENRIE--DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
              YS+L+  Y     I   DA++   E+    +     +   L+ A  K  +   + + 
Sbjct: 524 DQSYSLLLQCYAKGGNIAGIDAIEK--EVYGGTVFPSWVILRTLVIANFKCRRLGGIEKA 581

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            +++ ++G  P+    N +L+     G   +   +F  + +     D  TY  ++ M+ +
Sbjct: 582 FQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAK 641

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             E  +A K+   +K  +  P + +++ +ING C +G++ ++  +L +MI  G+ P   T
Sbjct: 642 CSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVT 701

Query: 447 F-----GKLRKLLIKEGREDVLKFLQEKM 470
           +     G     +  E RE +   +Q  +
Sbjct: 702 YHTLVGGYASLEMFSEAREVINYMIQHNL 730



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 122/302 (40%), Gaps = 37/302 (12%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+ +T+  ++  Y R      A   +N M   G    L  +N LL+ L +  +   AQ I
Sbjct: 452 LSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSI 511

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREI------------------------- 222
              M+ + F P+ ++YS+LL+ + K  N+     I                         
Sbjct: 512 VSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFK 571

Query: 223 ----------FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                     F+E+   G NPD+V +  M+ +  K G   +   I  S+  +   P    
Sbjct: 572 CRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLIT 631

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+  Y   +   +A     +++ + +  DV  YN +I  FCK    K   R+L +M 
Sbjct: 632 YNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 691

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELE 391
           + G+AP   T + ++ G        EA  V   MI+      + TY  ++  +C+    E
Sbjct: 692 ADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFE 751

Query: 392 KA 393
           +A
Sbjct: 752 EA 753



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 3/295 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDTG 230
           LL AL  S +   A  +          D+    +++   G++        +  EM +  G
Sbjct: 109 LLKALELSGHWEWALALLRWAGAEGAADASALEMVVRALGREGQHDAVCALLDEMPLPPG 168

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
              D+  Y  ++  L +AGR + A+ +   +      PT   Y+V++  YG   R    +
Sbjct: 169 SRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRI 228

Query: 291 DTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              L EM   G+  D    + +I A C+           +D+ ++G  P   T N +L  
Sbjct: 229 VALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQV 288

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               G   EA RV + M +  C+ DA TY  +   + + G  E+A K    M  K  +P+
Sbjct: 289 FGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPN 348

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
             T++ ++    + G V ++  L + M + G  P+  T+  +  +L K+ R  V+
Sbjct: 349 AFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVM 403



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 131/313 (41%), Gaps = 38/313 (12%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G+ +S +    ++  +   G+    F  + E     +   +  Y++++  L++   +   
Sbjct: 449 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTA 508

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYAR------VQKVEEAVY----------------- 152
             +V+ MRTK    N +++ ++++ YA+      +  +E+ VY                 
Sbjct: 509 QSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIA 568

Query: 153 ------------TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
                        F  ++  G   +L  FN +LS   K+    K  EIFD +K   + PD
Sbjct: 569 NFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPD 628

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TY+ L++ + K      A +I  ++  +   PD+V+Y  +++  CK G + EA  I+ 
Sbjct: 629 LITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILS 688

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M +    P    Y  LV  Y       +A +    M ++ +      Y  ++ ++CKA 
Sbjct: 689 EMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAK 748

Query: 320 KFKNVYRVLKDMN 332
           +F+     L +++
Sbjct: 749 RFEEARSFLSEVS 761



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 2/178 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K + Y   +  ++SM+   AK   Y  + ++ ++++   +  ++ T+  +M  YA+  + 
Sbjct: 586 KARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSES 645

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
            EA    N ++   V  ++ ++N +++  CK   +++AQ I   M  D   P   TY  L
Sbjct: 646 WEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 705

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           + G+        ARE+   M+     P  +TY  +VD  CKA R +EA   +  +  T
Sbjct: 706 VGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSET 763


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 187/414 (45%), Gaps = 47/414 (11%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I +L+K  +      L+  M     L +V+TF  ++    R+ ++ E     + M 
Sbjct: 246 YQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRML 305

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             G T N   +  L++ LC+   V +AQ + + +     P+   ++IL+ G+ K   L  
Sbjct: 306 FRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP---TPNDVHFTILINGYVKSGRLDE 362

Query: 219 ARE-IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           A   ++ +M+  GC PD+ T+  ++  LCK G +  A+ +V  M +  C P    Y+ L+
Sbjct: 363 ANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLL 422

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +  +N++E+A     EM   G   ++  YN L+ A CK  K      +L +M+ KG  
Sbjct: 423 DGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCK 482

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI------------------------------ 367
           P+  T N ++ GL      ++A  ++R M+                              
Sbjct: 483 PDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKL 542

Query: 368 ------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                 + C  D  TY  +IK FC+ G  EKA  ++  M  K  +PS  + ++LINGLC 
Sbjct: 543 VNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCR 602

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
            G V ++  LL DMI +G+ P   T+  L   L K G       ++E  NL  K
Sbjct: 603 VGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGN------IREAFNLFNK 650



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 171/362 (47%), Gaps = 9/362 (2%)

Query: 118 DLVNAMRTKRML------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           D  NA    +M+      +V TF  ++    +   +  AV   N M   G T NL  +  
Sbjct: 361 DEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTT 420

Query: 172 LLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LL   CK   + +A  + + M  + F  +   Y++LL    K+  +P+A ++  EM D G
Sbjct: 421 LLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKG 480

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C PDI T+  ++  LCK  R ++AL + + M        +  Y+ L+H +     I++A+
Sbjct: 481 CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEAL 540

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               +M   G   D   YN LI AFCK    +    +  +M  K + P++ +CN+++NGL
Sbjct: 541 KLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGL 600

Query: 351 IGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G+   A  + R MI    A D  TY  +I   C+ G + +AF ++  ++ +   P  
Sbjct: 601 CRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDA 660

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE-GREDVLKFLQE 468
            T++ LI   C  G+  D+ +LL   +E    P+  T+  L    IKE G+E+ + F   
Sbjct: 661 ITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKEIGKENGISFGTA 720

Query: 469 KM 470
           K+
Sbjct: 721 KV 722



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 199/464 (42%), Gaps = 82/464 (17%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYA 142
           F+WA  Q+ Y H+   YH +I+ L   ++++++  L+  ++ + +   E+ F  IM+ Y 
Sbjct: 89  FQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYG 148

Query: 143 RVQKVEEA---------VY-------TFNV--------------------MQKYGVTQNL 166
           R     +A         VY       ++NV                    M   GV   +
Sbjct: 149 RANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTV 208

Query: 167 AAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             F  ++ ALC    V  A  +  D  K   +P+S  Y  L+    K   +  A ++  E
Sbjct: 209 YTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEE 268

Query: 226 MVDTGCNPDI-----------------------------------VTYGIMVDVLCKAGR 250
           M   GC PD+                                   +TYG++++ LC+ G+
Sbjct: 269 MFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK 328

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL--EMEKNGILADVAMY 308
           VDEA    + + + V  P    +++L++ Y    R+++A + FL  +M KNG   DV  +
Sbjct: 329 VDEA----QVLLNKVPTPNDVHFTILINGYVKSGRLDEA-NAFLYDKMIKNGCRPDVFTF 383

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N LI   CK     +   ++ DM++ G  PN  T   +L+G   + + +EA  V   M  
Sbjct: 384 NTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA 443

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  E +   Y ++++  C+ G++ KA  +   M  K   P + TF+ LI GLC      D
Sbjct: 444 KGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKED 503

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           +  L  DM+  G+  +  T+  L    ++ G  ++ LK + + +
Sbjct: 504 ALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDML 547



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 130/272 (47%), Gaps = 2/272 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++++   K  Q +    ++N M  K   LN+  + +++R   +  KV +A+     M
Sbjct: 417 TYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEM 476

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
              G   ++  FN L+  LCK      A  ++ D + D  I ++ TY+ L+  + +   +
Sbjct: 477 SDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAI 536

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++  +M+  GC  D +TY  ++   CK G  ++ALG+   M      P++   ++L
Sbjct: 537 QEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLL 596

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      ++ +A++   +M   G+  DV  YN+LI   CK    +  + +   + ++G+
Sbjct: 597 INGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGI 656

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            P++ T N ++      G  D+AY +  R ++
Sbjct: 657 QPDAITYNTLICWHCRAGMFDDAYLLLLRGVE 688



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + +E ++  Y+ ++ +L K  +     D++  M  K    ++ TF  ++    +V + E+
Sbjct: 444 KGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKED 503

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLE 208
           A+  +  M   GV  N   +N L+ A  +   +++A ++ + M  R  P D  TY+ L++
Sbjct: 504 ALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIK 563

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            + K     +A  +F EMV     P  ++  ++++ LC+ G+V  AL +++ M      P
Sbjct: 564 AFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAP 623

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y+ L++       I +A + F +++  GI  D   YN LI   C+A  F + Y +L
Sbjct: 624 DVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLL 683

Query: 329 KDMNSKGVAPNSRTCNIILNGLI 351
                    PN  T  I+++  I
Sbjct: 684 LRGVENAFIPNDVTWYILVSNFI 706



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 2/223 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++I  L K+ + +    L   M    ++ N  T+  ++  + R   ++EA+   N
Sbjct: 485 IFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVN 544

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M   G   +   +NGL+ A CK     KA  +FD M +   +P + + ++L+ G  +  
Sbjct: 545 DMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVG 604

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+ R+M+  G  PD+VTY  +++ LCK G + EA  +   + +   +P +  Y+
Sbjct: 605 KVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYN 664

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            L+  +      +DA    L   +N  + +   +  L+  F K
Sbjct: 665 TLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIK 707


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 186/383 (48%), Gaps = 4/383 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
            +N   +V  Y  +I+ L K  +      L++ MR K +    T+  ++    + ++  E
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASE 133

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLE 208
           A      M   G   ++  +  L++  CKSK    A  +F+ +  R F PD  TYS L++
Sbjct: 134 AYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLID 193

Query: 209 GWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           G  K+  L  A ++F  M+ +G C P+ VTY  ++   C+ G++DEA+ +++ M  T   
Sbjct: 194 GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 253

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++ +    R++DA D   +M + G+  DV  + +L+   C+ N+  +   +
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHI 313

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
           L +M  K  +P   T N IL+G     + +EA +     +  C  +  ++ +MI+  C+ 
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD-CPPNVVSFNIMIRGLCKV 372

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-GIRPSGET 446
               +A ++ +  + +R  P +  ++ +I+GLC +  V ++C +   M+E+ G  P+  T
Sbjct: 373 NRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSIT 432

Query: 447 FGKLRKLLIKEGREDVLKFLQEK 469
           +  L   L   G  D  +   EK
Sbjct: 433 YSTLITGLCNAGMLDRARGYIEK 455



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 158/325 (48%), Gaps = 3/325 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I+ L K+++ +     +  M +K    +V T+  ++       ++ EA      M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
               +T N+  +  L+  LCK   V +A  +   M+ + +P + TY+ L+ G  K     
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERAS 132

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++  EMV +GC PDI TY  ++   CK+ + D+AL + + + +   RP    YS L+
Sbjct: 133 EAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192

Query: 278 HTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                E R+++A+D F  M K+G  + +   YN+LI  FC+  K      +L+ M   G 
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           +P+  T   ++NG       D+AY +  +M  K    D  T+T ++   C+   L  A  
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLC 420
           +   M+ K   P+++T++ +++G C
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYC 337



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 170/343 (49%), Gaps = 5/343 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +++   +V+++E+A+     M   G   ++  +  ++ ALC    + +A++  + M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +R   P+  TY++L++G  K   +  A  +  +M    C P  VTY  ++  LCKA R 
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERA 131

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +++ M  + C P  F Y+ L+  +    + +DA+  F ++   G   DV  Y+ L
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 312 IGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
           I   CK  + K    +   M  S    PN+ T N +++G    G+ DEA  +  RM +  
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 371 EA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            + D  TYT ++  FC+   L+ A+ +   M  K   P + TF+ L++GLC +  +SD+ 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            +L +M  K   P+  T+  +     +  + E+  KF+ E+M+
Sbjct: 312 HILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD 354



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 142/308 (46%), Gaps = 39/308 (12%)

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD------------------------ 234
           D  TY+ L++G  K   L +A     +MV  G +PD                        
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 235 -----------IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
                      +VTY +++D LCK GRVDEA+ ++  M    C PT+  Y+ L+      
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKA 128

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            R  +A D   EM  +G + D+  Y  LI  FCK+ K  +  RV + + ++G  P+  T 
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 344 NIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           + +++GL   G   EA  +F RMIK   C  +  TY  +I  FC+ G++++A  + + M 
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-E 460
                P + T++ L+NG C    + D+  LL  M  KG+ P   TF  L   L +E R  
Sbjct: 249 ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLS 308

Query: 461 DVLKFLQE 468
           D +  L E
Sbjct: 309 DAVHILGE 316



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 9/245 (3%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C+ D VTY  ++  LCK  R+++AL  +  M S    P  + Y+ ++H   VENR+ +A 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               EM    +  +V  Y  LI   CK  +      +L  M  K V P + T N +++GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                  EAY +   M+   C  D  TYT +I  FC+  + + A +V++ +  + F P +
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IRPSGETFGKLRKLLIKEGREDVLKFLQE 468
            T+S LI+GLC +G + ++  L   MI+ G   P+  T+  L     + G+ D      E
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD------E 239

Query: 469 KMNLL 473
            MNLL
Sbjct: 240 AMNLL 244



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 17/246 (6%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y +++    K+ +    +DL+N M  K +  +V TF  +M    R  ++ +AV+   
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILG 315

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ----EIFDCMKDRFIPDSKTYSILLEGWG 211
            M++   +  +  +N +L   C++  + +A+    E  DC      P+  +++I++ G  
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC-----PPNVVSFNIMIRGLC 370

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTS 270
           K      A E+  E     CNPD+V Y  ++D LC+  +VDEA  + + M +   C P S
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 271 FIYSVLVHTYGVENR-IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             YS L+   G+ N  + D    ++E    G + ++  YN LI AF KAN+ ++   +L 
Sbjct: 431 ITYSTLIT--GLCNAGMLDRARGYIE---KGCVPNIGTYNLLIDAFRKANRDEDARELLD 485

Query: 330 DMNSKG 335
           DM  +G
Sbjct: 486 DMVQRG 491


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 188/381 (49%), Gaps = 9/381 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           A  +++  L + R +++ +     M  T   +N  +   ++  Y +++K   A     +M
Sbjct: 74  AGSNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALM 133

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
            K G   N+   N LL  LC++    KA  +   M+ +  +PD  +Y+ ++ G+ +   L
Sbjct: 134 LKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKEL 193

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+  EM  +GC+  +VT+GI++D  CKAG++DEA+G +K M          +Y+ L
Sbjct: 194 EKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +     ++     F E+ + G       YN LI  FCK  + K    + + M  +GV
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGV 313

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T   +++GL G G+T EA +    MI K  E +A TY ++I   C+ G +  A +
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE 373

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRPSGETFGKLRKL 453
           + + MK +R  P   T+++L+ GLC KG + ++  LL  M++      P   ++  L   
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHG 433

Query: 454 LIKEGR----EDVLKFLQEKM 470
           L KE R     D+   L EK+
Sbjct: 434 LCKENRLHQALDIYDLLVEKL 454



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 185/381 (48%), Gaps = 9/381 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y+++I    + ++ +   +L N M+      ++ T+ I++  + +  K++EA+    
Sbjct: 177 VFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLK 236

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDP 214
            M+  G+  +L  +  L+   C    + + + +FD + +R   P + TY+ L+ G+ K  
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A EIF  M++ G  P++ TY  ++D LC  G+  EAL  +  M      P +  Y+
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYN 356

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF----KNVYRVLKD 330
           ++++    +  + DAV+    M+K     D   YN L+G  C         K +Y +LKD
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKD 416

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
             S    P+  + N +++GL       +A  ++  ++ KL   D  T  +++    + G+
Sbjct: 417 --SSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGD 474

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + KA ++WK +   + + +  T++ +I+G C  G+++ +  LL  M    ++PS   +  
Sbjct: 475 VNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC 534

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           L   L KEG  D    L E+M
Sbjct: 535 LLSSLCKEGSLDQAWRLFEEM 555



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 173/377 (45%), Gaps = 5/377 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I    K+ Q +   ++   M  + +  NV T+  ++     V K +EA+   N+M
Sbjct: 284 TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLM 343

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            +     N   +N +++ LCK   V  A EI + MK R   PD+ TY+ILL G     +L
Sbjct: 344 IEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDL 403

Query: 217 PRAREIFREMV--DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
             A ++   M+   +  +PD+++Y  ++  LCK  R+ +AL I   +   +        +
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTN 463

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+++      +  A++ + ++  + I+ +   Y A+I  FCK         +L  M   
Sbjct: 464 ILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVS 523

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKA 393
            + P+    N +L+ L   G  D+A+R+F  M +     D  ++ +MI    + G+++ A
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSA 583

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   M      P + T+S LIN     G + ++    + M++ G  P       + K 
Sbjct: 584 ESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKY 643

Query: 454 LIKEGREDVLKFLQEKM 470
            I +G  D L  L +K+
Sbjct: 644 CISQGETDKLTELVKKL 660



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 162/338 (47%), Gaps = 7/338 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKV 147
           +++ E +   Y+ +I  L K        ++V  M+ +R    N+ T+ I++        +
Sbjct: 345 EKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNI-TYNILLGGLCAKGDL 403

Query: 148 EEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYS 204
           +EA     +M K       ++ ++N L+  LCK   + +A +I+D + ++    D  T +
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTN 463

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILL    K  ++ +A E+++++ D+    +  TY  M+D  CK G ++ A G++  M  +
Sbjct: 464 ILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVS 523

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P+ F Y+ L+ +   E  ++ A   F EM+++    DV  +N +I    KA   K+ 
Sbjct: 524 ELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSA 583

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKM 383
             +L  M+  G++P+  T + ++N  +  G  DEA   F +M+    E DA     ++K 
Sbjct: 584 ESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKY 643

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               GE +K  ++ K +  K  +        +++ +C+
Sbjct: 644 CISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCN 681


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 148/293 (50%), Gaps = 2/293 (0%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N L+  LC       A  + D M  R  +PD  TY+ILLE   K     +A ++  EM 
Sbjct: 159 YNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 218

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC PDI+TY ++V+ +C+ GRVD+A+  +KS+ S  C P +  Y++++       R E
Sbjct: 219 AKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWE 278

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           DA     EM + G   +V  +N LI   C+    +    VL  +   G  PNS + N IL
Sbjct: 279 DAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPIL 338

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +    + + D A      M+ + C  D  +Y  ++   C+GGE++ A ++   +K K   
Sbjct: 339 HAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 398

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P + +++ +I+GL   G   ++  LL +M+ KG++P   T+  +   L +E R
Sbjct: 399 PVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDR 451



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 155/306 (50%), Gaps = 4/306 (1%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           ++ A+N +++  C +  +  A+ +   M     PDS TY+ L+ G         A  +  
Sbjct: 123 DVMAYNAMVAGYCVTGQLDAARRLVADMP--MEPDSYTYNTLIRGLCGRGRTGNALVVLD 180

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           +M+  GC PD+VTY I+++  CK     +A+ ++  M +  C P    Y+V+V+    E 
Sbjct: 181 DMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEG 240

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R++DA++    +  +G   +   YN ++   C A ++++  +++ +M+ KG  PN  T N
Sbjct: 241 RVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFN 300

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           ++++ L  RG  + A  V  ++ K  C  ++ +Y  ++  FC+  ++++A    + M  +
Sbjct: 301 MLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSR 360

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
              P + +++ L+  LC  G V  +  LL  + +KG  P   ++  +   L K G+ ++ 
Sbjct: 361 GCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEA 420

Query: 463 LKFLQE 468
           L+ L E
Sbjct: 421 LELLNE 426



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 138/299 (46%), Gaps = 21/299 (7%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  ++ I+++     ++ E+A      M + G   N+  FN L+S LC+   V  A E+ 
Sbjct: 260 NTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVL 319

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D + K    P+S +Y+ +L  + K   + RA      MV  GC PDIV+Y  ++  LC+ 
Sbjct: 320 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRG 379

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G VD A+ ++  +    C P    Y+ ++       + ++A++   EM   G+  D+  Y
Sbjct: 380 GEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITY 439

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + +    C+ ++ +   R    +   G+ PN+   N IL GL  R ET  A  +F  MI 
Sbjct: 440 STISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMIS 499

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             C  +  TYT++I+     G +++A +                   L+  LC +G+VS
Sbjct: 500 NGCMPNESTYTILIEGLTYEGLVKEARE-------------------LLGELCSRGVVS 539



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 169/351 (48%), Gaps = 3/351 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y  ++E+  K   Y+    L++ MR K    ++ T+ +++    +  +V++A+    
Sbjct: 191 VVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLK 250

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            +  +G   N  ++N +L  LC ++    A+++   M  + + P+  T+++L+    +  
Sbjct: 251 SLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRG 310

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+  ++   GC P+ ++Y  ++   CK  ++D A+  V+ M S  C P    Y+
Sbjct: 311 LVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYN 370

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+        ++ AV+   +++  G    +  YN +I    KA K K    +L +M +K
Sbjct: 371 TLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK 430

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+ P+  T + I +GL      +EA R F ++  +    +   Y  ++   C+  E   A
Sbjct: 431 GLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNA 490

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
             ++ YM     +P+  T+++LI GL  +G+V ++  LL ++  +G+   G
Sbjct: 491 IDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKG 541



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 10/226 (4%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L + G ++EAL +V+SM            + L+       R  +A       E      D
Sbjct: 69  LVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLAACEP-----D 123

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  YNA++  +C   +     R++ DM    + P+S T N ++ GL GRG T  A  V  
Sbjct: 124 VMAYNAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLD 180

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            M++  C  D  TYT++++  C+    ++A K+   M+ K   P + T++V++NG+C +G
Sbjct: 181 DMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEG 240

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFG-KLRKLLIKEGREDVLKFLQE 468
            V D+   L+ +   G  P+  ++   L+ L   E  ED  K + E
Sbjct: 241 RVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE 286



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 35/168 (20%)

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVF----------------------------- 363
           S    P+    N  L GL+ RG+ +EA R+                              
Sbjct: 52  SPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTA 111

Query: 364 --RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             RR++  CE D   Y  M+  +C  G+L+ A ++   M ++   P  +T++ LI GLC 
Sbjct: 112 EARRVLAACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPME---PDSYTYNTLIRGLCG 168

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQE 468
           +G   ++ V+L+DM+ +G  P   T+  L +   K  G +  +K L E
Sbjct: 169 RGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDE 216


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 180/379 (47%), Gaps = 33/379 (8%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKV 147
           ++   E  +   + ++E      Q     +L+ AM  +     E ++C ++    +  +V
Sbjct: 204 RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRV 263

Query: 148 EEAVYTFN------VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDS 200
           EEAV  F                +L  +N ++  LC++  + +A ++F+ M +R + PDS
Sbjct: 264 EEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDS 323

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            +Y IL++G  K   L  AR +F++++ +G  P  V Y  ++  LC A   D+A  +   
Sbjct: 324 WSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD 383

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M+   C P+   Y+V++        +E+A D   +M ++G + DV  YN ++   CK+++
Sbjct: 384 MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 443

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380
            +    +  +M   G  PN R+ N I+ GL  + + D+A                     
Sbjct: 444 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA--------------------- 482

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
               CQ G+L++AF++ K M     +P + T+S LI+GLC    V D+  LLEDM+++  
Sbjct: 483 ----CQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQC 538

Query: 441 RPSGETFGKLRKLLIKEGR 459
           +P+  T   L   L K GR
Sbjct: 539 KPTVVTQNTLIHGLCKAGR 557



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 176/390 (45%), Gaps = 19/390 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ MI++  K    +   DL+  M     + +V T+  +M    +  +VEEA+  FN M+
Sbjct: 396 YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEME 455

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKA------QEIFDCMK----DRFIPDSKTYSILLE 208
           + G T N  + N ++  LC+   + +A       E F  +K    D  +PD  TYS L+ 
Sbjct: 456 RLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 515

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G      +  AR +  +MV   C P +VT   ++  LCKAGR+ EA  ++ +M S+   P
Sbjct: 516 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 575

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y+ LVH +    + E A +   +M   G+  +V  Y AL+   CKAN+      V 
Sbjct: 576 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 635

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFC 385
             M S G APN  T   ++ G    G+ D   ++F  M+  C     D   Y  +    C
Sbjct: 636 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV--CAGISPDHVVYGTLAAELC 693

Query: 386 QGGELEKAFKVWKYMK--LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + G   +A ++ +  +  L+        +   ++GL + G +  +   + DM+  G  P+
Sbjct: 694 KSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPA 753

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
            E    L   L K G+  +    L+E M+L
Sbjct: 754 PERCASLVAGLCKSGQGGEARAVLEEIMDL 783



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 204/454 (44%), Gaps = 44/454 (9%)

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           Q GI  +P +   V++ + N G        ++  ++ +      Y+ +I+SL+K ++ + 
Sbjct: 3   QQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEA 62

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK-----YGVTQ----- 164
           +  +V  M  +    +  TF  I+    +  K++EA    + M+      Y  T      
Sbjct: 63  VKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAH 122

Query: 165 ---------------------NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKT 202
                                N +A+N ++ ALCK+  V  A E+   M ++ IP  + +
Sbjct: 123 ELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGS 182

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
              +L G      +  A +++RE     C   +VT  ++++  C  G+VD+A  ++++M 
Sbjct: 183 LDSVLVGLMDSGRIDEALQVYRENRREPC---LVTLNVLLEGFCSRGQVDKARELLRAMP 239

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME------KNGILADVAMYNALIGAFC 316
              C P    Y  ++       R+E+AV  F + E       +     +  YN +I   C
Sbjct: 240 DEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLC 299

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD- 375
           + ++     ++ + MN + V+P+S +  I+++GL   G+ ++A  +F++++      +  
Sbjct: 300 QNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTV 359

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            YT +I   C     + A +++  M  +   PS  T++V+I+  C +G++ ++C L++ M
Sbjct: 360 AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKM 419

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           IE G  P   T+  +   L K  R E+ L    E
Sbjct: 420 IEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNE 453



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 134/278 (48%), Gaps = 6/278 (2%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           M + G+      F  ++   C      +A +IF  M++   P    Y++L++   K    
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQET 60

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              +++ + MVD GC PD  T+  ++  LCKAG++DEA  ++  M S +  P     S L
Sbjct: 61  EAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFL 120

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            H   +   +E A      M     +A+ + YN ++ A CKA +  +   + + M+ K +
Sbjct: 121 AHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARVDDALELARTMSEKRI 176

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
              + + + +L GL+  G  DEA +V+R   +  E    T  ++++ FC  G+++KA ++
Sbjct: 177 PLAAGSLDSVLVGLMDSGRIDEALQVYRENRR--EPCLVTLNVLLEGFCSRGQVDKAREL 234

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            + M  +   P   ++  +++GLC  G V ++  L  D
Sbjct: 235 LRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGD 272



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M + GI     ++ ++I  +C   +     ++   M  +  +P     N++++ L  R E
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLME-ECHSPYPDVYNVLIDSLSKRQE 59

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           T+   ++ + M+ + C  D+ T+T ++   C+ G++++A  V   M+ +   P   T S 
Sbjct: 60  TEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSF 119

Query: 415 LINGLCDKGIVSDSCVLLEDM 435
           L + LC +G +  +  LLE M
Sbjct: 120 LAHELCLRGSMERAFQLLEIM 140



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 52/112 (46%)

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
           M  +G+ P       ++ G    G T EA ++F  M +      D Y ++I    +  E 
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQET 60

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           E   K+ + M  +   P   TF+ ++ GLC  G + ++ +++++M  + I P
Sbjct: 61  EAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPP 112


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 9/381 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           S   +  ++ S+AK++ Y  +  L   M +  +  +V T  I++  +  ++++  A    
Sbjct: 149 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVL 208

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKD 213
             + K G   +   FN L+  LC    + +A  +FD  + + F PD  TY  L+ G  K 
Sbjct: 209 AKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKV 268

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  + R MV   C P+++ Y  ++D LCK  +V EA  +   M +    P  F Y
Sbjct: 269 GNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTY 328

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H        +       EM  + I+ +V +++ ++ A CK       + V+  M  
Sbjct: 329 NSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIK 388

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +GV P+  T   +++G   R E DEA +VF  M+ K C  +  +Y ++I  +CQ   ++K
Sbjct: 389 RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDK 448

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  + + M L+  I    T++ LI+GLC  G +  +  L  +M+  G  P   T+  L  
Sbjct: 449 AMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLD 508

Query: 453 LLIKEGREDVLKFLQEKMNLL 473
            L K         L E M LL
Sbjct: 509 YLCKN------HHLAEAMVLL 523



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 181/373 (48%), Gaps = 38/373 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+N   +V AY+++I+SL K RQ    ++L + M TK +  ++ T+  ++     + + +
Sbjct: 283 QKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWK 342

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
                 N M    +  N+  F+ ++ ALCK   +  A ++ D M  R + PD  TY+ L+
Sbjct: 343 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 402

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G      +  A ++F  MV  GC P++ +Y I+++  C+  R+D+A+G+++ M      
Sbjct: 403 DGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLI 462

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL------------------------- 302
             +  Y+ L+H      R++ A+  F EM  +G +                         
Sbjct: 463 ADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVL 522

Query: 303 ----------ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
                     AD+ +YN  I   C+A + +    +  +++SKG+ P+ RT NI+++GL  
Sbjct: 523 LKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCK 582

Query: 353 RGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           RG  DEA ++FR+M +  C  D   Y  +I+ F +  E   A ++ + M  + F   + T
Sbjct: 583 RGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVST 642

Query: 412 FSVLINGLCDKGI 424
            ++++  L D G+
Sbjct: 643 TTLIVEMLSDDGL 655



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 181/388 (46%), Gaps = 21/388 (5%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + ++  V  Y +++  L K+        L+ +M  K    NV  +  I+    + ++V E
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLE 208
           A   F+ M   G++ ++  +N L+ ALC     +    + + M   + +P+   +S +++
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 368

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
              K+  +  A ++   M+  G  PD+VTY  ++D  C    +DEA+ +  +M    C P
Sbjct: 369 ALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP 428

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y++L++ Y    R++ A+    +M   G++AD   YN LI   C   + ++   + 
Sbjct: 429 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 488

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQ 386
            +M + G  P+  T  I+L+ L       EA  V  + I+    DAD   Y + I   C+
Sbjct: 489 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAM-VLLKAIEGSNLDADILVYNIAIDGMCR 547

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-- 444
            GELE A  ++  +  K   P + T++++I+GLC +G++ ++  L   M E G    G  
Sbjct: 548 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCI 607

Query: 445 ------------ETFG--KLRKLLIKEG 458
                       ETFG  +L + ++ EG
Sbjct: 608 YNTIIRGFLRSNETFGATQLLQEMLAEG 635



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/465 (23%), Positives = 204/465 (43%), Gaps = 11/465 (2%)

Query: 16  ISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           +S   R     P    +D  K   SI+K+   S  + L T +D  GI      +  ++  
Sbjct: 135 LSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINS 194

Query: 73  FRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRM 128
           F +   L + F   A+  +   +     ++++I  L    KI +   ++D    +     
Sbjct: 195 FCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFD--KTIGEGFQ 252

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            +V T+  +M    +V     A+     M +     N+ A+N ++ +LCK + V +A  +
Sbjct: 253 PDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNL 312

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M  + I PD  TY+ L+              +  EMV++   P++V +  +VD LCK
Sbjct: 313 FSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 372

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G +  A  +V  M      P    Y+ L+  + + + +++AV  F  M   G + +V  
Sbjct: 373 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS 432

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI  +C+  +      +L+ M+ +G+  ++ T N +++GL   G    A  +F  M+
Sbjct: 433 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 492

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
              +  D  TY +++   C+   L +A  + K ++       +  +++ I+G+C  G + 
Sbjct: 493 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELE 552

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            +  L  ++  KG++P   T+  +   L K G  D    L  KM+
Sbjct: 553 AARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMD 597



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 1/244 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   F  M+     P  V +  ++  + K       L +   MDS    P  +  ++
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++++    R+  A     ++ K G   D   +N LI   C   K      +      +G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
             P+  T   ++NGL   G T  A R+ R M+ K C  +   Y  +I   C+  ++ +AF
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  M  K   P + T++ LI+ LC+         LL +M+   I P+   F  +   L
Sbjct: 311 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 370

Query: 455 IKEG 458
            KEG
Sbjct: 371 CKEG 374


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 197/470 (41%), Gaps = 80/470 (17%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM----------- 128
           AF FF    +       + +++ ++  LAKI  Y  ++ L N MR   +           
Sbjct: 75  AFHFFDLMMRSHPIP-PISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 129 -------------------------LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
                                     NV T+  +++      ++ EA   F  MQK G T
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 164 QNLAAFNGLLSALCKSKNVR---------------------------------------- 183
            N   +  L+  LC++ NV                                         
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 184 -KAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            +A+E+F+ MK +  IPD  +YS L+ G+       +++ +F EMVD G  PD+VT+ ++
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +D LCK G+V EA  +++ M      P    Y+ L+  + +   +  A + FL M   G+
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             D   Y  LI  +CK  K K    +  +M   G +PN  T   +L GL  +G+  +A +
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +F  M      A++  Y + +   C+   L +A +++  +K   F  ++  +S LI+GLC
Sbjct: 434 LFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLC 493

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             G +  +  L E + ++G++P   T+  +     K G+ D    L EKM
Sbjct: 494 KAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKM 543



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 189/390 (48%), Gaps = 9/390 (2%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N +  V  Y  +I+ L K+ +     +L   M+ + M+ +V ++  ++  +    K +++
Sbjct: 232 NCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQS 291

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
            + F+ M   GV  ++  F+ L+  LCK   V +A+++ + M  R  +P+  TY+ L++G
Sbjct: 292 KHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDG 351

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           +    +L  ARE+F  M   G  PD ++Y  +++  CK  +V EA+ +   M      P 
Sbjct: 352 FCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPN 411

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y  L+     + ++ DA   F  M+  G+ A+  +Y   +   CK +       +  
Sbjct: 412 VTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFN 471

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
           ++ S     N    + +++GL   G+ + A+ +F ++ +   + D  TY +MI  FC+ G
Sbjct: 472 ELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVG 531

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++ A  +++ M+     P +  ++ L+ G C+   + +   LL  M++K + P+  +  
Sbjct: 532 QVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCT 591

Query: 449 KLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
            +  +L K+  E   KF+    +LL K P+
Sbjct: 592 IVVDMLCKD--EKYKKFV----DLLPKFPV 615



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 10/284 (3%)

Query: 177 CKSKNVRKAQ--EIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           CK+ N+   Q    FD M +   IP   +++ LL G  K  +  +   ++ EM   G +P
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+ T  I+ + LC   RV EAL  +  +      P    Y+ L+    +E+RI +A   F
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRV----LKDMNSKGV--APNSRTCNIIL 347
           L M+K G   +   Y  LI   C+        ++    L D +  GV   P   T +II+
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244

Query: 348 NGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +GL   G  DEA  +F  M  +    D  +Y+ +I  FC  G+ +++  ++  M  +   
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           P M TFSVLI+ LC +G V+++  LLE MI++GI P+  T+  L
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSL 348



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 35/184 (19%)

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F  M ++  +  ++ +N L+G   K N +  ++ +  +M   G++P+  T +I+ N
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
            L       EA      +++                                  + +IP+
Sbjct: 135 CLCNVNRVSEALAAMAGILR----------------------------------RGYIPN 160

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQ 467
           + T++ LI GLC +  +S++  L   M + G  P+  T+G L K L + G  ++ LK  +
Sbjct: 161 VVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHK 220

Query: 468 EKMN 471
           E +N
Sbjct: 221 EMLN 224


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 178/354 (50%), Gaps = 3/354 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +++N   S  +Y +MI  L   +   +   L+  M    +  NV  +  ++  YA   ++
Sbjct: 341 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 400

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           EEA    + M   GV  ++  +N ++S L K+  + +A      ++ R + PD+ T+   
Sbjct: 401 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 460

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   +  A + F EM+D G  P+   Y ++++   KAG + EAL I + + +   
Sbjct: 461 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 520

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P     S  +H      R+++A+  F E+++ G++ DV  Y++LI  FCK  + +  + 
Sbjct: 521 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE 580

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +  +M  KG+APN    N +++GL   G+   A ++F  M  K  E D+ TY+ MI  +C
Sbjct: 581 LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC 640

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +   + +AF ++  M  K   P    ++ L++G C +G +  +  L  +M++KG
Sbjct: 641 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 159/323 (49%), Gaps = 3/323 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M N   + +++  + +   + EA+  F  +   GV  ++   +  +  L K+  V++A +
Sbjct: 486 MPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 545

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +F  +K++  +PD  TYS L+ G+ K   + +A E+  EM   G  P+I  Y  +VD LC
Sbjct: 546 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC 605

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K+G +  A  +   M      P S  YS ++  Y     + +A   F EM   G+     
Sbjct: 606 KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSF 665

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +YNAL+   CK    +    + ++M  KG A  + + N +++G     +  EA ++F+ M
Sbjct: 666 VYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEM 724

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           I K    D  TYT +I   C+ G++E+A  ++K M+ +  I    T++ L+ G    G  
Sbjct: 725 IAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQS 784

Query: 426 SDSCVLLEDMIEKGIRPSGETFG 448
           S+   L E M+ KG++P   T+G
Sbjct: 785 SEVFALFEKMVAKGVKPDEVTYG 807



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 165/338 (48%), Gaps = 2/338 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++  + R   ++E +   +VM   G+  NL  +N L+  LCK   + KA EI   M    
Sbjct: 250 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 309

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+S+T+ +L+EG+ ++ N+ RA E+  EM      P  V+YG M++ LC    +  A 
Sbjct: 310 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 369

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M  +  +P   +YS L+  Y  E RIE+A      M  +G+  D+  YNA+I   
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
            KA K +     L ++  +G+ P++ T    + G    G+  EA + F  M+      + 
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 489

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             YT++I    + G L +A  +++++     +P + T S  I+GL   G V ++  +  +
Sbjct: 490 PLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 549

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           + EKG+ P   T+  L     K+G  +    L ++M L
Sbjct: 550 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL 587



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 185/368 (50%), Gaps = 4/368 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V+   + I  L K  + Q    + + ++ K ++ +V T+  ++  + +  +VE+A    +
Sbjct: 524 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 583

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   G+  N+  +N L+  LCKS ++++A+++FD M ++ + PDS TYS +++G+ K  
Sbjct: 584 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N+  A  +F EM   G  P    Y  +V   CK G +++A+ + + M       T+  ++
Sbjct: 644 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK-GFATTLSFN 702

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y    +I++A   F EM    I+ D   Y  +I   CKA K +    + K+M  +
Sbjct: 703 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 762

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
            +  ++ T   ++ G    G++ E + +F +M+ K  + D  TY ++I   C+   L +A
Sbjct: 763 NLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEA 822

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           FK+   +  K  +       +LI  LC +  ++++  LL++M E G++PS      L + 
Sbjct: 823 FKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRS 882

Query: 454 LIKEGRED 461
             + G+ D
Sbjct: 883 FHEAGKMD 890



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 168/339 (49%), Gaps = 1/339 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF   +  Y++  K+ EA   F+ M  +G+  N   +  L++   K+ N+ +A  IF  +
Sbjct: 456 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 515

Query: 193 KD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
                +PD +T S  + G  K+  +  A ++F E+ + G  PD+ TY  ++   CK G V
Sbjct: 516 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 575

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A  +   M      P  FIY+ LV        I+ A   F  M + G+  D   Y+ +
Sbjct: 576 EKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 635

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I  +CK+      + +  +M SKGV P+S   N +++G    G+ ++A  +FR M++   
Sbjct: 636 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
           A   ++  +I  +C+  ++++A ++++ M  K+ +P   T++ +I+  C  G + ++ +L
Sbjct: 696 ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL 755

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            ++M E+ +     T+  L     K G+   +  L EKM
Sbjct: 756 FKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 794



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 206/478 (43%), Gaps = 42/478 (8%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSP-KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL 79
            +++S P++E L+ ++ IS  +  +  K ++ ++   S  +++P+++  VL + +     
Sbjct: 28  EFSTSTPTSETLNFSQQISDFLKQNNWKTIMVSSHIPS--KLNPDVIRAVLHQNQVGDPK 85

Query: 80  AFC-FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--------------- 123
               FF W++ Q      + ++  +   L     + +   ++  M               
Sbjct: 86  RLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVL 145

Query: 124 ---RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV------------------MQKYGV 162
              R     +   F I++  Y R+  ++EA   F V                  M + G+
Sbjct: 146 FWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGL 205

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRARE 221
             N   +  + + LC++K + +A+  F+ M K    PD    S L++G+ ++ ++     
Sbjct: 206 VPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR 265

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           I   MV  G   +++TY +++  LCK G++++A  I+K M +  C+P S  + +L+  Y 
Sbjct: 266 IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 325

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            E+ +  A++   EMEK  ++     Y A+I   C         ++L+ M   G+ PN  
Sbjct: 326 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 385

Query: 342 TCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
             + ++ G    G  +EA R+   M       D   Y  +I    + G++E+A      +
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 445

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           + +   P   TF   I G    G ++++    ++M++ G+ P+   +  L     K G
Sbjct: 446 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 503



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 154/321 (47%), Gaps = 2/321 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++++ L K    Q    L + M  K +  +  T+  ++  Y + + V EA   F+ M 
Sbjct: 597 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 656

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             GV  +   +N L+   CK  ++ KA  +F  M  +    + +++ L++G+ K   +  
Sbjct: 657 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 716

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++F+EM+     PD VTY  ++D  CKAG+++EA  + K M        +  Y+ L++
Sbjct: 717 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 776

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            Y    +  +    F +M   G+  D   Y  +I A CK +     +++  ++  KG+  
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 836

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
                ++++  L  R +  EA ++   M +L  +      + +++ F + G++++A +V+
Sbjct: 837 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVF 896

Query: 398 KYMKLKRFIPSMHTFSVLING 418
           + +K    +P   T   L+NG
Sbjct: 897 EGVKSLGLVPDTTTLIDLVNG 917


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 177/365 (48%), Gaps = 3/365 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVEEAVYTFN 155
           V   +++I++L +  Q +    ++  M +  +   ET F  +M+ +     +E A+    
Sbjct: 195 VVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKT 254

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M + G +      N L++  CK   V  A   I   + D F PD  TY+  +    ++ 
Sbjct: 255 KMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNG 314

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A ++   M+  G +PD+ TY  +++ L K G +DEA GIV  M    C P +  ++
Sbjct: 315 HVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFN 374

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+     +NR+E+A+D   E+   G+  DV  +N LI A CK        R+ ++M S 
Sbjct: 375 TLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSS 434

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G AP+  T NI+++ L   G+   A  + + M    C     TY  +I   C+   +E+A
Sbjct: 435 GCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEA 494

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +V+  M       S  TF+ LI+GLC    + D+  L+E M+++G++PS  T+  +   
Sbjct: 495 EEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTH 554

Query: 454 LIKEG 458
             K+G
Sbjct: 555 YCKQG 559



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 214/473 (45%), Gaps = 49/473 (10%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL 107
           +L++AL +     S  + E++++K   AG          E +++ +E       S +ES 
Sbjct: 75  MLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESY 134

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVET-----FCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           A++R++    DLV        +  +T        ++ + +R+ K+ E+VY  N M   G+
Sbjct: 135 ARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRM-KLLESVY--NEMTDRGI 191

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRARE 221
             ++   N L+ ALC++  VR A  + + M    + PD  T++ L++G+ ++ ++  A  
Sbjct: 192 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALR 251

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH--- 278
           +  +M++TGC+P  VT  ++++  CK GRV++ALG ++   +    P    Y+  VH   
Sbjct: 252 VKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLC 311

Query: 279 -------------------------TYGV-------ENRIEDAVDTFLEMEKNGILADVA 306
                                    TY            +++A     +M   G L D  
Sbjct: 312 QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 371

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI A C  N+ +    + +++  KG++P+  T NI++N L   G+     R+F  M
Sbjct: 372 TFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 431

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
               C  D  TY ++I   C  G+L  A  + K M+      S  T++ +I+ LC +  +
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRI 491

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
            ++  + + M   GI  S  TF  L   L K  R D    L E+M   VKE L
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQM---VKEGL 541



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 176/351 (50%), Gaps = 14/351 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++   ++  +++EA    N M   G   +   FN L+ ALC S+N  + +E  
Sbjct: 334 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALC-SQN--RLEEAL 390

Query: 190 DCMKDRFI----PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           D  ++  +    PD  T++IL+    K  DP+L     +F EM  +GC PD VTY I++D
Sbjct: 391 DLARELTVKGLSPDVYTFNILINALCKVGDPHL--GIRLFEEMKSSGCAPDEVTYNILID 448

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LC  G++  AL ++K M+S  C  ++  Y+ ++     + RIE+A + F +M+ +GI  
Sbjct: 449 HLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISR 508

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
               +N LI   CKA +  +   +++ M  +G+ P++ T N IL     +G+  +A  + 
Sbjct: 509 SAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADIL 568

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
             M     E D  TY  +I   C+ G  + A K+ + M++K   P+   ++ +I  L  +
Sbjct: 569 ETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRR 628

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR--EDVLKFLQEKMN 471
             + D+  L  +M E G  P   T+  + + L + G   ++   FL E +N
Sbjct: 629 NNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVN 679



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 4/344 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++++I +L    + +   DL   +  K +  +V TF I++    +V      +  F  M+
Sbjct: 373 FNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 432

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLP 217
             G   +   +N L+  LC    +  A ++   M+    P S  TY+ +++   K   + 
Sbjct: 433 SSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIE 492

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+F +M   G +   VT+  ++D LCKA R+D+A  +++ M     +P++  Y+ ++
Sbjct: 493 EAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSIL 552

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  +  ++ A D    M  NG   DV  Y  LI   CKA + +   ++L+ M  KG+ 
Sbjct: 553 THYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIR 612

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEKAFK 395
           P  +  N ++  L  R    +A  +FR M ++ E  DA TY ++ +  C+GG  +++AF 
Sbjct: 613 PTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFD 672

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
               M  K F+P   +F +L  GL + G+       +E +IEK 
Sbjct: 673 FLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEKA 716



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 158/338 (46%), Gaps = 3/338 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T  +++  Y ++ +VE+A+         G   +   +N  +  LC++ +V  A ++ D M
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM 326

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++   PD  TY+ ++    K+  L  A+ I  +MVD GC PD  T+  ++  LC   R+
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +EAL + + +      P  + +++L++           +  F EM+ +G   D   YN L
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I   C   K  N   +LK+M S G   ++ T N I++ L  +   +EA  VF +M     
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
              A T+  +I   C+   ++ A ++ + M  +   PS  T++ ++   C +G +  +  
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAAD 566

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQ 467
           +LE M   G      T+G L   L K GR  V LK L+
Sbjct: 567 ILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 604



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 139/303 (45%), Gaps = 4/303 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           LL+AL +  +   A ++ +    ++ F P    Y  +++  G          + REM   
Sbjct: 59  LLTALREQADPEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRRE 118

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIED 288
           G           V+   +  R D+A+ +V++  +T   +  + +Y+ L++     +R++ 
Sbjct: 119 GHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKL 178

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
               + EM   GI  DV   N LI A C+A++ +    +L++M+S  VAP+  T   ++ 
Sbjct: 179 LESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQ 238

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           G I  G  + A RV  +M++  C     T  ++I  +C+ G +E A    +      F P
Sbjct: 239 GFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEP 298

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
              T++  ++ LC  G VS +  +++ M+++G  P   T+  +   L K G  D  K + 
Sbjct: 299 DQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIV 358

Query: 468 EKM 470
            +M
Sbjct: 359 NQM 361


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 230/516 (44%), Gaps = 100/516 (19%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRN------AGTLAFCFFKWAE------------KQ 90
           VL+  +++ G   +P + E +   FR+         +  C +  AE            K 
Sbjct: 137 VLNQMVEEEGSGSAPSLCELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKV 196

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--------------------RTKRMLN 130
            N + S+  Y+S++ +L   R   IMWD+ N +                    R  R+ +
Sbjct: 197 LNLQVSIATYNSLLYNL---RHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQD 253

Query: 131 VETFC----------------IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
             TF                  +M  + ++  V+ A   F +M KYG+  ++ ++N LL 
Sbjct: 254 AVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLH 313

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
            LC + ++ +A E  + M++  + PD  TY+IL  G+     +  A ++ + M+  G NP
Sbjct: 314 GLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNP 373

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+VTY I++   C+ G ++E+  + + M S   + +   Y+VL+ +     RI++AV   
Sbjct: 374 DLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILL 433

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            EME  G+  D+  Y+ LI   CK    +    + ++M SK + PNS  C+ I++GL  +
Sbjct: 434 HEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEK 493

Query: 354 GETD-----------------------------------EAYRVFRRMI-KLCEADADTY 377
           G                                      EA R ++++I K       T+
Sbjct: 494 GAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTF 553

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             +I  FC+ G+L +A K+   +K+   +P+  T++ L+NG C++G +     +L +M  
Sbjct: 554 NSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEA 613

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           K I+P+  T+  + K L KEGR      L E + LL
Sbjct: 614 KAIKPTQITYTVVVKGLCKEGR------LHESVQLL 643



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 172/389 (44%), Gaps = 78/389 (20%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L++ T+ +++    +  +++EAV   + M+  G+  +L  ++ L+  LCK   V +A E+
Sbjct: 408 LSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIEL 467

Query: 189 FDCM-KDRFIPDSKT-----------------------------------YSILLEGWGK 212
           ++ M   R  P+S                                     Y+I+++G+ K
Sbjct: 468 YEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAK 527

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL---------GIVKS--- 260
             N+  A   ++++++ G +P IVT+  ++   CK G++ EA+         G+V +   
Sbjct: 528 LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVT 587

Query: 261 -----------------------MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
                                  M++   +PT   Y+V+V     E R+ ++V     M 
Sbjct: 588 YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMY 647

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G+  D   YN +I +FCKA+  +  +++   M    + P+  T N+++NGL   G   
Sbjct: 648 ARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLK 707

Query: 358 EAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           +A R+   +    I+L +     YT +IK  C  G+++ A   +  M  + F  S+  +S
Sbjct: 708 DADRLLVTLQDQSIRLTKV---AYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYS 764

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            +IN LC + +++D+      M+  GI P
Sbjct: 765 AVINRLCKRNLITDAKFFFCMMLTHGIPP 793



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 108/237 (45%), Gaps = 1/237 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +M  Y     +       + M+   +      +  ++  LCK   + ++ ++   M
Sbjct: 587 TYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYM 646

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R   PD  TY+ +++ + K  +L +A ++  +M+     P  VTY ++++ LC  G +
Sbjct: 647 YARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNL 706

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A  ++ ++     R T   Y+ ++  +  +  +++A+  F +M + G    +  Y+A+
Sbjct: 707 KDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAV 766

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           I   CK N   +       M + G+ P+   C ++LN     G+ +  + +F  MIK
Sbjct: 767 INRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIK 823



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 145/359 (40%), Gaps = 72/359 (20%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           L N+ R   + NV  + ++   Y+R + V +A++    M+   +  ++A +N LL     
Sbjct: 157 LCNSFRDWDLNNV-VWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLL----- 210

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             N+R    ++D                               ++ E+  +G   +  T 
Sbjct: 211 -YNLRHTDIMWD-------------------------------VYNEIKASGVPQNEYTN 238

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I++D LC+  R+ +A+  ++        P+   ++ L+  +     ++ A   F  M K
Sbjct: 239 PILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIK 298

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G+L DV  YN L+   C A   +       DM + GV P+  T NI+ NG         
Sbjct: 299 YGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANG--------- 349

Query: 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
            +R+                         G +  A+KV + M L    P + T+++LI G
Sbjct: 350 -FRIL------------------------GLISGAWKVVQRMLLNGLNPDLVTYTILICG 384

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            C  G + +S  L E M+ +G++ S  T+  L   L K GR D    L  +M ++  +P
Sbjct: 385 HCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKP 443



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 2/225 (0%)

Query: 116 MWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           M+D+++ M  K +   + T+ ++++   +  ++ E+V     M   G+  +   +N ++ 
Sbjct: 604 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 663

Query: 175 ALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           + CK+ +++KA ++ + M +    P   TY++L+ G     NL  A  +   + D     
Sbjct: 664 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 723

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
             V Y  ++   C  G V  AL     M       +   YS +++     N I DA   F
Sbjct: 724 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFF 783

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             M  +GI  D  +   ++ AF ++    +V+ +   M   G+ P
Sbjct: 784 CMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 162/333 (48%), Gaps = 3/333 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  +++  K++EA    +VM   G       +  ++   CK   + +A+E+   M
Sbjct: 470 TYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 529

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++R   P    ++ LL  +        A ++  EM   GC PD++ Y  ++D+L   GRV
Sbjct: 530 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 589

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +  SM    C P +  Y  ++  +     +E A +    M K+G+  D   YN+L
Sbjct: 590 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSL 649

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           +  + K  +    + V   M + G+ PN+ T N++++GL   G+TD A+ +F+ M++  E
Sbjct: 650 MDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDE 709

Query: 372 ADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
                 +YT++I    + G + +AF  ++ M  +  IP  HT++ LI  L   G + ++ 
Sbjct: 710 VPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAK 769

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
            L+EDM++ G+ P  + +  L   LI     D 
Sbjct: 770 KLVEDMVKLGVNPDVQAYSALITGLIDSSMVDT 802



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 170/335 (50%), Gaps = 2/335 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+V ++  +++  A  ++++EA   F  ++  G + N+ A+  ++  L K+  +    + 
Sbjct: 361 LDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKN 420

Query: 189 FDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F+ M     +P   TY+++++G  K   LP A ++F +MV  GC PD +TY  ++D   K
Sbjct: 421 FEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 480

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           A ++DEA  ++  M +    PT+  Y  +VH +   + I +A +   +M + G    + +
Sbjct: 481 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFI 540

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           + +L+  +    + +  Y+VL +M ++G AP+      +++ L   G   EA  VF  MI
Sbjct: 541 FTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMI 600

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K C  DA TY  +I+ F + G +E A ++ + M      P    ++ L++G      V 
Sbjct: 601 EKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVD 660

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +  + + M+  GI+P+  TF  L   L K+G+ D
Sbjct: 661 QAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTD 695



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 175/354 (49%), Gaps = 7/354 (1%)

Query: 99  AYHSMIESLAKI-RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY+S+++   K+ R    +  L+  +      +++T+ I++  ++R  ++++A+  F ++
Sbjct: 266 AYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLL 325

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             YG   N A +  ++  L  ++ + +A+  FD   D       +Y+ +++G      + 
Sbjct: 326 SSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVI-----SYTTVIKGLADSKRID 380

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+F ++   GC+P++V Y  ++D L KAGR+++ L   + M  + C PT   Y+V++
Sbjct: 381 EACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVI 440

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   + DA   F +M + G + D   Y  LI  F KA+K     ++L  M +KG  
Sbjct: 441 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 500

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P + T   I++G       +EA  V  +M  + CE     +T ++  +   G  E+A++V
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
              M  +   P +  ++ LI+ L   G V ++  + + MIEKG  P   T+G +
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 614



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 180/415 (43%), Gaps = 31/415 (7%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           E  V A+ ++I    K  Q Q+   L+N    +   +V  +  ++  Y +   ++     
Sbjct: 87  EPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKI 146

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK 212
              M   G   + AA+  L+  LCK   V +A E+F+ M K   + D  T+  L+E    
Sbjct: 147 LEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSN 206

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L  A E++REM++ G  P +     ++  LCKAG+VDEA  I +++ +     +   
Sbjct: 207 HGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVA 266

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+  Y    R++D +   L+M +     D+  YN L+  F +AN+  +   + K ++
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----------------------- 369
           S G  PN+ T   I+ GL      +EA   F   + +                       
Sbjct: 327 SYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELF 386

Query: 370 -------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                  C  +   YT +I    + G +E   K ++ M     +P+  T++V+I+GLC  
Sbjct: 387 EKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKA 446

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            ++ D+C + E M++KG  P   T+  L     K  + D  + L + M     EP
Sbjct: 447 QMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEP 501



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 192/420 (45%), Gaps = 39/420 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V +Y ++I+ LA  ++     +L   ++T     NV  +  ++    +  ++E+ +  F 
Sbjct: 363 VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 422

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M           +  ++  LCK++ +  A ++F+ M  +  +PD+ TY+ L++G+ K  
Sbjct: 423 DMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 482

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  AR++   M+  G  P  VTYG +V   CK   ++EA  ++  M    C P  FI++
Sbjct: 483 KMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFT 542

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y  + R E+A     EM   G   DV +Y +LI       +      V   M  K
Sbjct: 543 SLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEK 602

Query: 335 GVAPNSRT--------------------------------C---NIILNGLIGRGETDEA 359
           G AP++ T                                C   N +++G +     D+A
Sbjct: 603 GCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 662

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLIN 417
           + V+ RM+    + +A T+ +++    + G+ ++AF ++K M  K  +P ++ ++++LI+
Sbjct: 663 FGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILID 722

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           GL   G VS++    ++MI++GI P   T+  L   L K GR    K L E M  L   P
Sbjct: 723 GLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNP 782



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 170/371 (45%), Gaps = 33/371 (8%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            + ++  ++   A + K++EA   FN M   G   ++ AF  L+   CK+   +    + 
Sbjct: 54  TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLL 113

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           +    RF PD   Y+ ++ G+ K  +L    +I  EM+  GC PD   Y +++D LCK G
Sbjct: 114 NQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLG 173

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           RVDEA  + + M  + C      +  L+       ++++A + + EM + G    + + +
Sbjct: 174 RVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQD 233

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
           +LI A CKA K      + + + +K VA +    N +++G    G  D+  ++  +M++ 
Sbjct: 234 SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVE- 292

Query: 370 CE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD------ 421
           C+   D  TY +++  F +   L+ A +++K +      P+  T++ +I GL D      
Sbjct: 293 CDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEE 352

Query: 422 ------------------KGI-----VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
                             KG+     + ++C L E +   G  P+   +  +   L+K G
Sbjct: 353 AKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAG 412

Query: 459 R-EDVLKFLQE 468
           R ED LK  ++
Sbjct: 413 RIEDGLKNFED 423



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 3/317 (0%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           +EEA+     M   G+  ++   N +L+ LCK++ + KA E+F  M      P   +Y+ 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           ++ G      +  A + F  M+D GC PD++ +  ++   CKAG+      ++       
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            RP  F+Y+ ++H Y     ++       EM   G + D A Y  LI   CK  +    Y
Sbjct: 121 -RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            + + M   G   +  T   ++  L   G+ DEA  ++R MI +  E   +    +I   
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFAL 239

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G++++A ++++ +  K+   S   ++ L++G C  G V D   LL  M+E    P  
Sbjct: 240 CKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDI 299

Query: 445 ETFGKLRKLLIKEGRED 461
           +T+  L     +  R D
Sbjct: 300 QTYNILVAGFSRANRLD 316



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 186 QEIFDCMKDR----FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           +E  DC+K+      +PD    +I+L G  K   + +A E+F EM   GC P IV+Y  +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +  L    ++DEA     SM    C P    ++ L+H +    + +      L       
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG-HMLLNQALKRF 120

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             DV +Y ++I  +CKA      +++L++M + G  P++    ++++ L   G  DEAY 
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +F RM K  C  D  T+  +I+     G+L++A ++++ M  + + P +     LI  LC
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
             G V ++  + + ++ K +  S   +  L     K GR +D LK L
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLL 287



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 3/246 (1%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYS 204
           +V EA + F+ M + G   +   +  ++    K  NV  A EI + M K    PD   Y+
Sbjct: 588 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYN 647

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DS 263
            L++G+ K   + +A  ++  MV +G  P+ VT+ +++  L K G+ D A  + K M + 
Sbjct: 648 SLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK 707

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               PT   Y++L+   G   R+ +A   F EM   GI+ +   Y +LI +  KA +   
Sbjct: 708 DEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPE 767

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             ++++DM   GV P+ +  + ++ GLI     D A+ VF+ M+K  C  +  TY ++ +
Sbjct: 768 AKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRR 827

Query: 383 MFCQGG 388
            F   G
Sbjct: 828 GFRAAG 833



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 2/224 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  I++ ++++  VE A     +M K GV  +  A+N L+    K + V +A  ++D M
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGR 250
               I P++ T+++L+ G  KD    RA  +F+EM++     P +V+Y I++D L KAGR
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V EA    + M      P    Y+ L+++     RI +A     +M K G+  DV  Y+A
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           LI     ++     + V ++M  +G APN  T  ++  G    G
Sbjct: 790 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 833



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNVM 157
           Y ++I++ +KI   +   +++  M  K  +  + F    +M  Y ++++V++A   ++ M
Sbjct: 611 YGTIIQNFSKIGNVEAAGEILELM-AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPN 215
              G+  N   FN L+  L K     +A  +F  M  KD   P   +Y+IL++G GK   
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A   F+EM+D G  P+  TY  ++  L KAGR+ EA  +V+ M      P    YS 
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+      + ++ A D F EM K G   +   Y  L   F  A +  ++   +K   S+G
Sbjct: 790 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDL-EAVKQHFSQG 848

Query: 336 VA 337
           VA
Sbjct: 849 VA 850


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 205/442 (46%), Gaps = 41/442 (9%)

Query: 59  IRVSPEIVEDVL--EKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           I++SP  V  VL  ++ R    +A+ FF W+ KQ+ Y H++  Y S+++ LA  +    +
Sbjct: 112 IKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRI 171

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
             + + +R     + V     +++ + ++  VEE ++ +  M++ G+   L  +N L++ 
Sbjct: 172 RFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNG 231

Query: 176 LCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L  +  V  A+ +F+ M+  R  PD  TY+ +++G+ K     +A E  R M   G   D
Sbjct: 232 LVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEAD 291

Query: 235 IVTYGIMVDV-----------------------------------LCKAGRVDEALGIVK 259
            +TY  M+                                     LCK G+++E   + +
Sbjct: 292 KITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFE 351

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           +M     +P   IY+VL+  Y     +EDA+     M   G   DV  Y+ ++   CK  
Sbjct: 352 NMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNG 411

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
           + +      +     G+A NS   + +++GL   G  DEA R+F  M  K C  D+  Y 
Sbjct: 412 RVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYN 471

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +I  F + G++++A  ++K M+ +     +++T+++LI+G+  +    ++  L + MI+
Sbjct: 472 ALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMID 531

Query: 438 KGIRPSGETFGKLRKLLIKEGR 459
           KGI P+      L   L   G+
Sbjct: 532 KGITPTAACLRALSTGLCLSGK 553



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 179/389 (46%), Gaps = 22/389 (5%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++MI+   K  Q Q   + +  M TK +  +  T+  +++           V  + 
Sbjct: 257 VVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQ 316

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M + G+     AF+ ++  LCK   + +   +F+ M +    P+   Y++L++G+ K  
Sbjct: 317 EMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTG 376

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A  +   M+D G NPD+VTY ++V+ LCK GRV+EA+   ++         S  YS
Sbjct: 377 SVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYS 436

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+   G   R+++A   F EM + G   D   YNALI AF K  K      + K M  +
Sbjct: 437 SLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEE 496

Query: 335 -GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G      T  I+++G+      +EA +++  MI K     A     +    C  G++ +
Sbjct: 497 EGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVAR 556

Query: 393 AFKVWKYMKLKRFIPSMHTFSV----LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           A K+     L    P           +IN LC  G + ++C L + + E+G     E  G
Sbjct: 557 ACKI-----LDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERG----REVPG 607

Query: 449 KLRKLLI----KEGREDV-LKFLQEKMNL 472
           ++R ++I    K G+ D+ +K +  K+ +
Sbjct: 608 RIRTVMINALRKVGKADLAMKLMHSKIGI 636



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 150/313 (47%), Gaps = 6/313 (1%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI---LLEGWGKDPNLPRA 219
           T NL  +  L+  L  +K+V + +  F C + R      T S    L++ +GK   +   
Sbjct: 149 THNLECYVSLVDVLALAKDVDRIR--FICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEEL 206

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             ++R+M + G  P + TY  +++ L  A  VD A  + + M+S   +P    Y+ ++  
Sbjct: 207 LWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKG 266

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y    + + A++    ME  G+ AD   Y  +I A    + F +   + ++M+ KG+   
Sbjct: 267 YCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVP 326

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
               ++++ GL   G+ +E Y VF  MI K  + +   YT++I  + + G +E A ++  
Sbjct: 327 PHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLH 386

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M  + F P + T+SV++NGLC  G V ++    +     G+  +   +  L   L K G
Sbjct: 387 RMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAG 446

Query: 459 REDVLKFLQEKMN 471
           R D  + L E+M+
Sbjct: 447 RVDEAERLFEEMS 459



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 147/327 (44%), Gaps = 7/327 (2%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIE 105
           V L   +D+ G++V P     V+      G L   +  F+   ++ + + +V  Y  +I+
Sbjct: 312 VALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGS-KPNVAIYTVLID 370

Query: 106 SLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             AK    +    L++ M  +    +V T+ +++    +  +VEEA+  F   +  G+  
Sbjct: 371 GYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAI 430

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIF 223
           N   ++ L+  L K+  V +A+ +F+ M ++    DS  Y+ L++ + K   +  A  +F
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALF 490

Query: 224 REMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           + M +  GC+  + TY I++  + K  R +EAL +   M      PT+     L     +
Sbjct: 491 KRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCL 550

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++  A     E+   G++ D A  + +I   CKA + K   ++   +  +G     R 
Sbjct: 551 SGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRI 609

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL 369
             +++N L   G+ D A ++    I +
Sbjct: 610 RTVMINALRKVGKADLAMKLMHSKIGI 636


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 193/374 (51%), Gaps = 4/374 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I  L KI + +    ++  +  K +  +V  + II+    + + V +A   ++ M
Sbjct: 166 SYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEM 225

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
               ++ ++  FN L+   C    +++A  +F  M  + I PD  T+SIL++   KD N+
Sbjct: 226 ITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNI 285

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA+ +   M+  G  PD+VTY  ++D  C    V++A  +  +M      P +  Y+++
Sbjct: 286 TRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIM 345

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++  G    +++A+  F EM   GI  D   YN+LI   CK  +    ++++ +M++ G+
Sbjct: 346 INGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGI 405

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
             +  T N +++ L      D+A  + +++  +  +    TY ++I   C+GG L+ A  
Sbjct: 406 PADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQD 465

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK-LRKLL 454
           V++ + +K +  +  T++++INGLC +G+ +++ VLL  M   GI P   T+   +R L 
Sbjct: 466 VFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALF 525

Query: 455 IKEGREDVLKFLQE 468
            K+  E   K L+E
Sbjct: 526 RKDENEKAEKLLRE 539



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 170/347 (48%), Gaps = 3/347 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+ +I SL K +     + L + M TKR+  +V TF  ++  +  V +++EA   F+
Sbjct: 199 VVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFH 258

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M    +  ++  F+ L+ ALCK  N+ +A+ +   M K   IPD  TYS L++G+    
Sbjct: 259 EMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVN 318

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A+ +F  M   G  P   +Y IM++ L K   VDEAL + K M      P +  Y+
Sbjct: 319 EVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYN 378

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+       RI  A     EM  NGI AD+  YN+LI   CK +       ++K +  +
Sbjct: 379 SLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQ 438

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G+ P+  T NI+++GL   G    A  VF+ + IK    +A TY +MI   C+ G   +A
Sbjct: 439 GIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEA 498

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             +   M+    IP   T+  +I  L  K     +  LL +MI +G+
Sbjct: 499 EVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 204/432 (47%), Gaps = 8/432 (1%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSM 103
           +  + L   L+  GI  +      ++  + + G + F F  +A+  +  Y  +   ++++
Sbjct: 76  TTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTL 135

Query: 104 IESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           I  +    K+++     D V A+     L+  ++  ++    ++ +   A+     ++  
Sbjct: 136 INGICLNGKLKEALHFHDHVIALGFH--LDQVSYRTLINGLCKIGETRAALQMLKKIEGK 193

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRA 219
            V  ++  +N ++++LCK K V  A +++  M   R  PD  T++ L+ G+     L  A
Sbjct: 194 LVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEA 253

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +F EMV    NPD+ T+ I+VD LCK G +  A  ++  M      P    YS L+  
Sbjct: 254 FGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDG 313

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y + N +  A   F  M + G+      YN +I    K         + K+M  KG+AP+
Sbjct: 314 YCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPD 373

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
           + T N +++GL   G    A+++   M      AD  TY  +I + C+   ++KA  + K
Sbjct: 374 TVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVK 433

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +K +   PSM+T+++LI+GLC  G + ++  + +D++ KG   +  T+  +   L KEG
Sbjct: 434 KIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEG 493

Query: 459 REDVLKFLQEKM 470
             +  + L  KM
Sbjct: 494 LFNEAEVLLSKM 505



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 3/317 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++S+I     + Q +  + L + M  K +  +V TF I++    +   +  A     
Sbjct: 234 VVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLA 293

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
           VM K GV  ++  ++ L+   C    V KA+ +F  M    + P + +Y+I++ G GK  
Sbjct: 294 VMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIK 353

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  +F+EM   G  PD VTY  ++D LCK GR+  A  +V  M +         Y+
Sbjct: 354 MVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYN 413

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+      + I+ A+    +++  GI   +  YN LI   CK  + KN   V +D+  K
Sbjct: 414 SLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK 473

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G + N+ T NI++NGL   G  +EA  +  +M       DA TY  +I+   +  E EKA
Sbjct: 474 GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKA 533

Query: 394 FKVWKYMKLKRFIPSMH 410
            K+ + M ++  +   H
Sbjct: 534 EKLLREMIIRGLLLCKH 550



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 159/313 (50%), Gaps = 5/313 (1%)

Query: 60  RVSPEIV--EDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           R+SP++V    ++  F   G L   F  + E   +N    V  +  ++++L K       
Sbjct: 229 RISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRA 288

Query: 117 WDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            +++  M  + ++ +V T+  +M  Y  V +V +A + F+ M + GV  +  ++N +++ 
Sbjct: 289 KNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMING 348

Query: 176 LCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L K K V +A  +F  M  + I PD+ TY+ L++G  K   +  A ++  EM + G   D
Sbjct: 349 LGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPAD 408

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           I+TY  ++DVLCK   +D+A+ +VK +     +P+ + Y++L+       R+++A D F 
Sbjct: 409 ILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQ 468

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           ++   G   +   YN +I   CK   F     +L  M + G+ P++ T   I+  L  + 
Sbjct: 469 DLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKD 528

Query: 355 ETDEAYRVFRRMI 367
           E ++A ++ R MI
Sbjct: 529 ENEKAEKLLREMI 541



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 165/366 (45%), Gaps = 7/366 (1%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV---- 156
           H +   + K   + +  D+ +  R  RM    +     +    + K     YT  +    
Sbjct: 24  HYLHPFIPKSNDFDVNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSH 83

Query: 157 -MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
            ++  G+T  +  FN L++  C    +  A  IF   +K  + P + T++ L+ G   + 
Sbjct: 84  QLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNG 143

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A      ++  G + D V+Y  +++ LCK G    AL ++K ++  +      +Y+
Sbjct: 144 KLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYN 203

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++++   +  + DA   + EM    I  DV  +N+LI  FC   + K  + +  +M  K
Sbjct: 204 IIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLK 263

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
            + P+  T +I+++ L   G    A  +   M+K     D  TY+ ++  +C   E+ KA
Sbjct: 264 NINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKA 323

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             V+  M      P  H+++++INGL    +V ++  L ++M  KGI P   T+  L   
Sbjct: 324 KHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDG 383

Query: 454 LIKEGR 459
           L K GR
Sbjct: 384 LCKLGR 389


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 182/364 (50%), Gaps = 10/364 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            +R++++++++  + R++         L +    +R+  N++T+ I++R       ++ A
Sbjct: 118 GIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRA 177

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEG 209
           V  F+ +++  V  +   ++ L+  L K   +  A ++ D M + R  PD   Y+ LL G
Sbjct: 178 VTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGG 237

Query: 210 WGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
             K     +   ++ ++V D G  P++ TY +M+D LCK GR  E   + + M +   +P
Sbjct: 238 CFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQP 297

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y +L+H       ++ A   + E+ K G++ D AMYN+L+  FC+A + +  ++  
Sbjct: 298 DVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFW 357

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQ 386
                 G+  N RT NI++ GL   G  DEA  ++  + K   C  D  T+  +I   CQ
Sbjct: 358 DSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQ 416

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G   KAF +++  ++      + ++S +INGLC+ G + D+  + E M + G +P+   
Sbjct: 417 NGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHI 476

Query: 447 FGKL 450
           +  L
Sbjct: 477 YNAL 480



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 168/324 (51%), Gaps = 5/324 (1%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           ++T  +++   +  +++ + +  +V+EA + F     +   +NL  +N ++  L  S  V
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEA-WKFWDSAGFAGLRNLRTYNIMIKGLFDSGMV 384

Query: 183 RKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
            +A E++D ++     IPD+ T+  L+ G  ++    +A  IF E   +G   D+ +Y  
Sbjct: 385 DEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M++ LC  GR+ +A+ + + MD   C+P S IY+ L+  +    R  DAV  + +M  NG
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
               V  YN LI   CKA K++    V ++M   G  P+  T   ++ GL    + D+A 
Sbjct: 505 CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDAL 564

Query: 361 RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLING 418
            ++++++ K  + D   + ++I   C  G++++A  V+  MK K+   P++ T++ L++G
Sbjct: 565 SIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRP 442
           L + G +  +  L   + E G+ P
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEP 648



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 176/368 (47%), Gaps = 8/368 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN-VM 157
           Y +++  LAK  +     DL++ M R++   +V  +  ++    +  + E+ +  ++ ++
Sbjct: 196 YSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLV 255

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
           +  G   NLA +N +L  LCK    ++  E+++ M  +   PD  TY IL+ G  +  ++
Sbjct: 256 KDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDV 315

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++ E++ TG   D   Y  +V   C+AGRV EA     S      R     Y+++
Sbjct: 316 DGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLR-TYNIM 374

Query: 277 VHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKN-VYRVLKDMNSK 334
           +        +++A++ +  +EK+   + D   +  LI   C+ N F N  + + ++    
Sbjct: 375 IKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQ-NGFANKAFTIFEEARVS 433

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKA 393
           G   +  + + ++NGL   G   +A +V+ +M K  C+ ++  Y  +I  FCQ      A
Sbjct: 434 GKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDA 493

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +++  M      P++ T++ LI+GLC      ++  +  +M+E G  P   T+G L + 
Sbjct: 494 VRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRG 553

Query: 454 LIKEGRED 461
           L  + + D
Sbjct: 554 LFSDKKID 561



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 146/342 (42%), Gaps = 43/342 (12%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
           +++  ++R    + A+  F  +    G    + + N LL A  +++    A   F  +  
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSH 147

Query: 195 -----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
                R  P+ +TY+I+L       +L RA  +F  +      PD +TY  ++  L K  
Sbjct: 148 GAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQD 207

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMY 308
           R+D AL ++  M  +  +P    Y+ L+         E  +  + ++ K+ G   ++A Y
Sbjct: 208 RLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATY 267

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CK  +FK V  V + M +  + P+  T  I+++GL   G+ D A RV+  +IK
Sbjct: 268 NVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIK 327

Query: 369 LCEA-DADTYTMMIKMFCQGGELEKAFKVWK---YMKLKRF------------------- 405
                DA  Y  ++K FCQ G +++A+K W    +  L+                     
Sbjct: 328 TGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEA 387

Query: 406 -------------IPSMHTFSVLINGLCDKGIVSDSCVLLED 434
                        IP   TF  LI+GLC  G  + +  + E+
Sbjct: 388 IELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 133/319 (41%), Gaps = 81/319 (25%)

Query: 219 AREIFREMVDT-GCNPDI---------------------------------------VTY 238
           A + FR +    GCNP I                                        TY
Sbjct: 102 ALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTY 161

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I++  LC  G +D A+ +  S+      P    YS L+     ++R++ A+D   EM +
Sbjct: 162 NIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPR 221

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVL-KDMNSKGVAPNSRTCNIILNGL--IGR-- 353
           + +  DV  YNAL+G   KA +F+ V RV  K +   G  PN  T N++L+GL   GR  
Sbjct: 222 SRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFK 281

Query: 354 -------------------------------GETDEAYRVFRRMIKLCEA-DADTYTMMI 381
                                          G+ D A RV+  +IK     DA  Y  ++
Sbjct: 282 EVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLV 341

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           K FCQ G +++A+K W        + ++ T++++I GL D G+V D  + L D++EK + 
Sbjct: 342 KGFCQAGRVQEAWKFWDSAGFAG-LRNLRTYNIMIKGLFDSGMV-DEAIELWDLLEKDVA 399

Query: 442 --PSGETFGKLRKLLIKEG 458
             P   TFG L   L + G
Sbjct: 400 CIPDTVTFGTLIHGLCQNG 418



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 92/185 (49%), Gaps = 3/185 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I+ L K  +YQ    +   M       ++ T+  ++R     +K+++A+  +
Sbjct: 508 TVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIW 567

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGK 212
             +   G+  ++   N L+  LC +  V +A  +F  MK++    P+  TY+ L++G  +
Sbjct: 568 KQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYE 627

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              + +A  ++  + + G  PDI++Y   +  LC   R+ E + ++  + S    PT   
Sbjct: 628 TGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVIT 687

Query: 273 YSVLV 277
           +++LV
Sbjct: 688 WNILV 692



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 39/256 (15%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSP 63
           H  N +ISG   F + Y +S       DA +  SK+  +  SP V+    L     +   
Sbjct: 475 HIYNALISG---FCQVYRTS-------DAVRIYSKMADNGCSPTVITYNTLIDGLCKA-- 522

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESL---AKIRQYQIMWD- 118
                  EK++ A ++A       E  +N +   +  Y S+I  L    KI     +W  
Sbjct: 523 -------EKYQEASSVA------REMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQ 569

Query: 119 -LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSAL 176
            L   ++   M++     I++       KV+EA++ F+ M +K     NL  +N L+  L
Sbjct: 570 ILYKGLKVDVMMH----NILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGL 625

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            ++  + KA  ++  + +D   PD  +Y+  ++G      +    ++  E++  G  P +
Sbjct: 626 YETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTV 685

Query: 236 VTYGIMVDVLCKAGRV 251
           +T+ I+V  + K G +
Sbjct: 686 ITWNILVRAVIKYGPI 701



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 311 LIGAFCKA---NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-GRGETDE-------A 359
           ++ AF +A   +   + +R L  +   G  P  R+ N +L+  +  R  +D        +
Sbjct: 89  VLSAFSRAIMPDAALDAFRALPSI--LGCNPGIRSHNALLDAFVRARRFSDADAFFASLS 146

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +  F R I     +  TY ++++  C  G+L++A  ++  ++ ++  P   T+S L+ GL
Sbjct: 147 HGAFGRRIA---PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGL 203

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEP 477
             +  +  +  LL++M    ++P    +  L     K G  E V++   +    LVK+P
Sbjct: 204 AKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDK----LVKDP 258


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 168/336 (50%), Gaps = 1/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++ +  R  K  E++Y    +   G   ++     L+     S+N++KA  + + ++   
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD  +Y+ ++ G+ K   +  A ++F  M   G +PD+VTY IM+  LC  G+++ A  
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  +    C+P+   Y++L+    +E RI +A++ F E+   G+  D+  YNA+I   C
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K          ++ ++++G  P+  + NI+L   + +   ++  R+ + M+   CE +  
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVV 307

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T++++I  FC+ G + +A  V + MK K   P  +++  LI+  C +G +  +   LE M
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +  G  P    +  +   L K G  D+   + EK++
Sbjct: 368 VSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLD 403



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 177/362 (48%), Gaps = 3/362 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           + + +   V  Y+ MI SL    + ++ +++++ + +     +V T+ I++       ++
Sbjct: 158 RSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRI 217

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA+  F+ +   G+  +L  +N ++  +CK     +A +    +  R   PD  +Y+IL
Sbjct: 218 NEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNIL 277

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L  +           + ++MV +GC P++VT+ I++   C+ GRV EA+ +++ M     
Sbjct: 278 LRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGL 337

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P S+ Y  L+  +  E R++ A++   +M  +G L D+  YN ++   CK         
Sbjct: 338 TPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALD 397

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           V + ++  G  P  R  N + + L   G   +A  +   MI K  + D  TY  +I   C
Sbjct: 398 VFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLC 457

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G +++A  +   M+  RF P++ +F++++ G+C    V +   LL  M+EKG  P+  
Sbjct: 458 RDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNET 517

Query: 446 TF 447
           ++
Sbjct: 518 SY 519



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 176/365 (48%), Gaps = 14/365 (3%)

Query: 118 DLVNAMRTKRML------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +L  AMR   +L      +V ++  ++  +++  +++ A   F+ M+  G + ++  +N 
Sbjct: 112 NLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNI 171

Query: 172 LLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           ++ +LC    +  A E+ D  +KD   P   TY+IL+E    +  +  A E+F E+V  G
Sbjct: 172 MIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRG 231

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD+ TY  ++  +CK G  D AL  V+ + +  C P    Y++L+ ++  ++R ED  
Sbjct: 232 LRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGE 291

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               +M  +G   +V  ++ LI +FC+  + +    VL+ M  KG+ P+S + + +++  
Sbjct: 292 RLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAF 351

Query: 351 IGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G  D A     +M+   C  D   Y  ++   C+ G  + A  V++ +      P++
Sbjct: 352 CKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTV 411

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
             ++ + + L   G    +  ++ +MI KGI P   T+  L   L ++G       + E 
Sbjct: 412 RAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDG------LVDEA 465

Query: 470 MNLLV 474
           + LLV
Sbjct: 466 IGLLV 470



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 1/256 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T  I++  + R  +V EAV    VM++ G+T +  +++ L+SA CK   +  A E  
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYL 364

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M  D  +PD   Y+ +L    K      A ++F ++ + GC P +  Y  M   L   
Sbjct: 365 EKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSC 424

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G   +AL ++  M      P    Y+ L+     +  +++A+   ++ME       V  +
Sbjct: 425 GNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISF 484

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   CKA++      +L  M  KG  PN  +  +++ G+   G   EA  +   + +
Sbjct: 485 NIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYR 544

Query: 369 LCEADADTYTMMIKMF 384
           L     D+   + K F
Sbjct: 545 LGVISGDSSKRLNKTF 560


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 2/332 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPD 199
           Y R   +  A   F +M   G  +    +  LL  L  +  VR+A  +F  M+ D   PD
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           +  Y+ ++ G  +      A  +  E +  G  P+IV Y  ++D  C AG ++ AL + +
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            MD   C P    Y+ L+H      ++E A+  F  M + G+  +V  Y ALI   C   
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
             +  +R+L  M + G+ PN  T +++++ L  R + +EA      ++K   + +   YT
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C+ G+++ A ++ + M  + F+P  H++S LI+GLC +  +S + ++LEDM+EK
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GI+ S  T+  +   L++E   +  K + +KM
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFDKM 448



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 156/309 (50%), Gaps = 2/309 (0%)

Query: 164 QNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
           +NL  +  L++A C + ++  A Q +   +     PDS  Y+  + G+ +   L  A  +
Sbjct: 70  RNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRV 129

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M   GC     TY  ++  L  AG V EA+ +   M +  C P + +Y+ +VH    
Sbjct: 130 FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCE 189

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             R E+A     E   NG   ++ +YNALI  +C A + ++  +V + M+    +PN RT
Sbjct: 190 AGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRT 249

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
              +++GL   G+ + A  +F RM++   E +  TYT +I+  C  G L+ AF++   M+
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLME 309

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
               +P+  TFSVLI+ LC +  V ++ + L  +++KG++ +   +  L   L K G+ D
Sbjct: 310 TNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKID 369

Query: 462 VLKFLQEKM 470
               L +KM
Sbjct: 370 AADELMQKM 378



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 171/376 (45%), Gaps = 21/376 (5%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +   E +V  Y ++I+        Q  + L++ M T  ++ N  TF +++    + +KVE
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA      + K GV  N   +  L+  LCK+  +  A E+   M  + F+PD+ +YS L+
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  +   L +A  +  +M++ G     VTY I++D L +    +    I   M +T   
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+V V +Y  E R+EDA    ++M   G+  ++  YN LI  +         +  
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR----------------RMIKLCE 371
            + M  KG  PN  +  ++L  ++ +  +D +  +++                R + L  
Sbjct: 515 FEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLA- 573

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
             AD Y+  I+  C+   LE+A   +  M+     PS   ++ +I+  C   I++D+  L
Sbjct: 574 --ADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTL 631

Query: 432 LEDMIEKGIRPSGETF 447
           L+ M + G  P  E++
Sbjct: 632 LDSMTKSGYLPHLESY 647



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 165/334 (49%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+  +  ++  Y    ++E A+  F  M     + N+  +  L+  LCKS  V +A  +F
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLF 270

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+ L++G   + +L  A  +   M   G  P+  T+ +++D LCK 
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +V+EA   + S+     +    +Y+ L+       +I+ A +   +M   G + D   Y
Sbjct: 331 EKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           ++LI   C+  K      +L+DM  KG+  +  T  II++ L+    ++   ++F +MI 
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIA 450

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TYT+ ++ +C+ G +E A  +   M  +   P++ T++ LI G  + G+VS 
Sbjct: 451 TGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQ 510

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +    E M+ KG +P+ +++  L +L++K+   D
Sbjct: 511 AFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSD 544



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRMLNV--ETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           I  +A ++  Q++ + +    T+R L +  + +   +R   RV ++EEA + F  MQ   
Sbjct: 549 IWKIADMKDLQVLLEDI----TERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNAN 604

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           +T +   +  ++   C+ K +  A  + D M K  ++P  ++Y I++    +  N   A+
Sbjct: 605 LTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAK 664

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+F +++    N D + + I++  L + G V E   ++  M     +P++ I +++    
Sbjct: 665 EVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEI 724

Query: 281 GVENRIED 288
            V N +++
Sbjct: 725 TVTNEVQE 732


>gi|224115776|ref|XP_002332054.1| predicted protein [Populus trichocarpa]
 gi|222831940|gb|EEE70417.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 191/390 (48%), Gaps = 8/390 (2%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
            +LD+SGIR +  +V  V+ + R    LAF  FKW +K    +   +A   M+  L   R
Sbjct: 13  ASLDESGIRANQNLVYSVIWELREEWRLAFLAFKWGDKWGCVDE--KACELMVWVLGNHR 70

Query: 112 QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           ++   W L+  +    M   +   I++ +YA      +A+Y F +M K+ +T +  AF  
Sbjct: 71  KFNTAWILIRDLHRSLMSTRKAMLIMIDRYAAANVPGKAIYAFRIMDKFRMTPDEEAFYF 130

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD-PNLPRAREIFREMVDTG 230
           LL+ LCK+ N+ +A+E     K  F  + + ++I+L GW     ++  A+ I+REM    
Sbjct: 131 LLNVLCKNGNIEEAEEFMLVNKKFFPLEVEGFNIILNGWCNICVDVFEAKRIWREMSKYC 190

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
            +PD  TY  M+    K G + ++L +   M      P   +Y+ LV+    EN  ++A+
Sbjct: 191 IDPDATTYTHMISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVYILTRENCFKEAL 250

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               +M++ G+  D A YN++I   C+A K ++   ++  M  + V+P   T +  L G+
Sbjct: 251 KILDKMKETGLQRDSATYNSMIRPLCEAKKLEDARSLMAAMIEENVSPTIETYHAFLQGI 310

Query: 351 IGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
           +     +E + V  RM I       DT+ +++  F +  + E A K+W  MK      ++
Sbjct: 311 V----FEETFEVLDRMKIAGLGPTEDTFLLLLAKFFKLEQPENALKIWVEMKQYEVASNL 366

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
             ++V++ GL   G+++ +     +M   G
Sbjct: 367 THYTVMVEGLARCGLLTKAREYYAEMRSNG 396



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 4/217 (1%)

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           +MV VL    + + A  +++ +  ++   T     +++  Y   N    A+  F  M+K 
Sbjct: 61  LMVWVLGNHRKFNTAWILIRDLHRSLM-STRKAMLIMIDRYAAANVPGKAIYAFRIMDKF 119

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ETDE 358
            +  D   +  L+   CK    +     +  +N K         NIILNG      +  E
Sbjct: 120 RMTPDEEAFYFLLNVLCKNGNIEEAEEFML-VNKKFFPLEVEGFNIILNGWCNICVDVFE 178

Query: 359 AYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A R++R M K C + DA TYT MI  F + G L  + +++  MK + ++P +  ++ L+ 
Sbjct: 179 AKRIWREMSKYCIDPDATTYTHMISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVY 238

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            L  +    ++  +L+ M E G++    T+  + + L
Sbjct: 239 ILTRENCFKEALKILDKMKETGLQRDSATYNSMIRPL 275



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 103/246 (41%), Gaps = 33/246 (13%)

Query: 129 LNVETFCIIMRKYARV-QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           L VE F II+  +  +   V EA   +  M KY +  +   +  ++S   K  N+  +  
Sbjct: 157 LEVEGFNIILNGWCNICVDVFEAKRIWREMSKYCIDPDATTYTHMISCFSKVGNLFDSLR 216

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           ++D MK R ++P  + Y+ L+    ++     A +I  +M +TG   D  TY  M+  LC
Sbjct: 217 LYDGMKKRGWVPGIEVYNSLVYILTRENCFKEALKILDKMKETGLQRDSATYNSMIRPLC 276

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH------TYGVENRI-------------- 286
           +A ++++A  ++ +M      PT   Y   +       T+ V +R+              
Sbjct: 277 EAKKLEDARSLMAAMIEENVSPTIETYHAFLQGIVFEETFEVLDRMKIAGLGPTEDTFLL 336

Query: 287 -----------EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
                      E+A+  ++EM++  + +++  Y  ++    +            +M S G
Sbjct: 337 LLAKFFKLEQPENALKIWVEMKQYEVASNLTHYTVMVEGLARCGLLTKAREYYAEMRSNG 396

Query: 336 VAPNSR 341
            + + +
Sbjct: 397 YSDDPK 402


>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
 gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 173/349 (49%), Gaps = 3/349 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVE 148
           Q+ ++    +Y +++  LA+ + +  + +++  +  K +   ET F  + + Y + Q V 
Sbjct: 56  QRGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVEDKNVHCQETIFIALFQHYGKAQLVH 115

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           +AV  FN M ++   +   + N LL+ L  +    +A E+FD   +  F  +S  +++++
Sbjct: 116 KAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMGFRLNSVAFNVMI 175

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +GW +     +A ++F EM++    P +VTY  ++  LC+ G +D+A G+++ M     R
Sbjct: 176 KGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDMIKKGKR 235

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  +++L+    +     +A     +ME  G    V  +  L+    K  K      V
Sbjct: 236 PNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSV 295

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV-FRRMIKLCEADADTYTMMIKMFCQ 386
           L +M  + + P+  T NI++N L   G   +AY V F   +  CEA+A TY M++  FC+
Sbjct: 296 LHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGFCR 355

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            G+ E   KV   M      P + TF  L+ GL   G +  +C +LE+M
Sbjct: 356 VGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVLEEM 404



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 8/264 (3%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           LN   F ++++ +    + E+A   F+ M +  V  ++  +N L+  LC++  + KA+ +
Sbjct: 166 LNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGL 225

Query: 189 F-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             D +K    P++ T+++L+EG         A+++  +M   GC P +V +G+++  L K
Sbjct: 226 LEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGK 285

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G++DEA  ++  M     +P    Y++L++    E R  DA +   EM+  G  A+ A 
Sbjct: 286 RGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANAAT 345

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF---- 363
           Y  L+  FC+   F+   +VL  M + G  P   T   ++ GL+  G  D A  V     
Sbjct: 346 YRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVLEEME 405

Query: 364 RRMIKLCEADADTYTMMIKMFCQG 387
           +R +  C   AD +  ++   C+G
Sbjct: 406 KRQMMFC---ADDWEALVMESCRG 426



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 150/359 (41%), Gaps = 37/359 (10%)

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI-LL 207
           EA+  F+   + G   +  ++  LL  L + ++    +E+   ++D+ +   +T  I L 
Sbjct: 46  EALTLFHEYLQRGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVEDKNVHCQETIFIALF 105

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + +GK   + +A E+F  M    C     +   +++VL   G   EA  +         R
Sbjct: 106 QHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMGFR 165

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
             S  ++V++  +  +   E A   F EM +  +   V  YN+LIG  C+  +      +
Sbjct: 166 LNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGL 225

Query: 328 LKDMNSKGVAPNSRTCNIILNG--LIG--------------------------------- 352
           L+DM  KG  PN+ T  +++ G  LIG                                 
Sbjct: 226 LEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGK 285

Query: 353 RGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           RG+ DEA  V   M K   + D  TY ++I   C+ G    A++V   M++     +  T
Sbjct: 286 RGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANAAT 345

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + +L++G C  G       +L  M+  G  P  ETF  L   L+K G  D   F+ E+M
Sbjct: 346 YRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVLEEM 404



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 9/264 (3%)

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA---GRVDEALGIVKSMDSTVCR 267
            +DP    A  +F E +  G  PD  +Y  ++  L +    G V+E L  V+   +  C+
Sbjct: 41  ARDP--VEALTLFHEYLQRGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVED-KNVHCQ 97

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
            T FI   L   YG    +  AV+ F  M +   +      N+L+        F     +
Sbjct: 98  ETIFI--ALFQHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANEL 155

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
                  G   NS   N+++ G + +GE ++A +VF  M+ +  E    TY  +I   C+
Sbjct: 156 FDKGYEMGFRLNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCR 215

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            GEL+KA  + + M  K   P+  TF++L+ G C  G  +++  ++ DM  +G +P+   
Sbjct: 216 NGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVN 275

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           FG L   L K G+ D  K +  +M
Sbjct: 276 FGVLMSDLGKRGKIDEAKSVLHEM 299



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 2/232 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVE 148
           ++  E SV  Y+S+I  L +  +      L+  M  K +  N  TF ++M     + +  
Sbjct: 196 ERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHN 255

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA      M+  G    +  F  L+S L K   + +A+ +   MK R + PD  TY+IL+
Sbjct: 256 EAKKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILI 315

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               K+     A E+  EM   GC  +  TY ++VD  C+ G  +  L ++ +M ++   
Sbjct: 316 NYLCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHF 375

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           P    +  LV        ++ A     EMEK  ++     + AL+   C+ +
Sbjct: 376 PRVETFRSLVVGLVKSGNLDGACFVLEEMEKRQMMFCADDWEALVMESCRGD 427



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A+  F E  + G   D   Y AL+    +   F  V  VL+ +  K V     T  I L
Sbjct: 46  EALTLFHEYLQRGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVEDKNVHCQE-TIFIAL 104

Query: 348 NGLIGRGE-TDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
               G+ +   +A  +F RM +  C   + +   ++ +    G   +A +++       F
Sbjct: 105 FQHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMGF 164

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
             +   F+V+I G  +KG    +  + ++M+E+ + PS  T+  L   L + G  D  K 
Sbjct: 165 RLNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKG 224

Query: 466 LQEKMNLLVKEP 477
           L E M    K P
Sbjct: 225 LLEDMIKKGKRP 236


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 2/332 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPD 199
           Y R   +  A   F +M   G  +    +  LL  L  +  VR+A  +F  M+ D   PD
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPD 176

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           +  Y+ ++ G  +      A  +  E +  G  P+IV Y  ++D  C AG ++ AL + +
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            MD   C P    Y+ L+H      ++E A+  F  M + G+  +V  Y ALI   C   
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
             +  +R+L  M + G+ PN  T +++++ L  R + +EA      ++K   + +   YT
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C+ G+++ A ++ + M  + F+P  H++S LI+GLC +  +S + ++LEDM+EK
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GI+ S  T+  +   L++E   +  K + +KM
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFDKM 448



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 156/309 (50%), Gaps = 2/309 (0%)

Query: 164 QNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
           +NL  +  L++A C + ++  A Q +   +     PDS  Y+  + G+ +   L  A  +
Sbjct: 70  RNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRV 129

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M   GC     TY  ++  L  AG V EA+ +   M +  C P + +Y+ +VH    
Sbjct: 130 FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCE 189

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             R E+A     E   NG   ++ +YNALI  +C A + ++  +V + M+    +PN RT
Sbjct: 190 AGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRT 249

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
              +++GL   G+ + A  +F RM++   E +  TYT +I+  C  G L+ AF++   M+
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLME 309

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
               +P+  TFSVLI+ LC +  V ++ + L  +++KG++ +   +  L   L K G+ D
Sbjct: 310 TNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKID 369

Query: 462 VLKFLQEKM 470
               L +KM
Sbjct: 370 AADELMQKM 378



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 165/334 (49%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+  +  ++  Y    ++E A+  F  M     + N+  +  L+  LCKS  V +A  +F
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLF 270

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+ L++G   + +L  A  +   M   G  P+  T+ +++D LCK 
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +V+EA   + S+     +    +Y+ L+       +I+ A +   +M   G + D   Y
Sbjct: 331 EKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           ++LI   C+  K      +L+DM  KG+  +  T  II++ L+    ++   ++F +MI 
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIA 450

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TYT+ ++ +C+ G +E A  +   M  +   P++ T++ LI G  + G+VS 
Sbjct: 451 TGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQ 510

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +    E M+ KG +P+ +++  L +L++K+   D
Sbjct: 511 AFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSD 544



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 156/350 (44%), Gaps = 21/350 (6%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +   E +V  Y ++I+        Q  + L++ M T  ++ N  TF +++    + +KVE
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA      + K GV  N   +  L+  LCK+  +  A E+   M  + F+PD+ +YS L+
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  +   L +A  +  +M++ G     VTY I++D L +    +    I   M +T   
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+V V +Y  E R+EDA    ++M   G+  ++  YN LI  +         +  
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR----------------RMIKLCE 371
            + M  KG  PN  +  ++L  ++ +  +D +  +++                R + L  
Sbjct: 515 FEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLA- 573

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             AD Y+  I+  C+   LE+A   +  M+     PS   ++ +I+   D
Sbjct: 574 --ADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCAD 621


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 197/426 (46%), Gaps = 7/426 (1%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA-FCFFKWAEKQQNYEHS 96
           +S++   SP  +L   +  +       +V  V + + + G L   C       ++     
Sbjct: 22  VSRLGRDSPPRLLPLLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVP 81

Query: 97  VRAYHSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           + A+  ++  L  + + Y     L++A           F ++MR   R  K+  A   F+
Sbjct: 82  MPAWSDLMNRLPSVPEAYAFYLHLLDAGVPPE---ARQFNMLMRDMIRSGKLASARNVFD 138

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M + GV   +  FN L+S +CK+ ++  A  +   M K    PD  TY   ++G  K  
Sbjct: 139 EMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTG 198

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F EM + G NP+ V    ++D  CK G V   L +   M +   +     Y+
Sbjct: 199 RIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYN 258

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV+ +     ++ A D   EM K+G+  D   Y  LI   CK  +      + ++M+ +
Sbjct: 259 ALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDE 318

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           GVA +  T   +++GL   G + +A R+   M++   + D  TYTM+I  FC+ G+++  
Sbjct: 319 GVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTG 378

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           FK  K M+ K   P + T++V++NG C  G + ++ +LL  M+  G+ P+  T+  L   
Sbjct: 379 FKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDG 438

Query: 454 LIKEGR 459
             K G+
Sbjct: 439 HCKHGK 444



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 139/300 (46%), Gaps = 2/300 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V TF  +M    +   +  A     +M K G+  ++  +   +  LCK+  ++ A E+F+
Sbjct: 149 VVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFE 208

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M +R + P++   + L++   K+ ++    E+  EM   G   D+V Y  +V+  C+  
Sbjct: 209 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 268

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            +  A  IV+ M     +P    Y+ L+     E  ++ A++   EM   G+  D   Y 
Sbjct: 269 DMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYT 328

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
           ALI    KA +  +  R+L +M   G+ P++ T  ++++     G+    ++  + M  K
Sbjct: 329 ALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNK 388

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
                  TY +++  FC  G+++ A  +   M      P+  T+++L++G C  G V D+
Sbjct: 389 GKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDT 448



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+   ++   +  ++++A+  F  M + G+  N      L+ A CK  +V    E+ 
Sbjct: 183 DVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELR 242

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R +  D   Y+ L+ G+ +  ++  A +I  EM   G  PD VTY  ++D  CK 
Sbjct: 243 WEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKE 302

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +D A+ + + M           Y+ L+       R  DA     EM + G+  D   Y
Sbjct: 303 GELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTY 362

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-- 366
             +I AFCK    K  ++ LK+M +KG  P   T N+++NG    G+   A  +   M  
Sbjct: 363 TMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLN 422

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           I +C  D  TY +++   C+ G   K     +    K  +     ++ LIN
Sbjct: 423 IGVCPNDI-TYNILLDGHCKHG---KVRDTEELKSAKGMVSDFGVYTSLIN 469



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
            +W    +  +  + AY++++    ++R  +   D+V  MR   +  +  T+  ++    
Sbjct: 241 LRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCC 300

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSK 201
           +  +++ A+     M   GV  +   +  L+S L K+     A+ I  + M+    PD+ 
Sbjct: 301 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 360

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY+++++ + K+ ++    +  +EM + G NP IVTY ++++  C  G++  A  ++ +M
Sbjct: 361 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 420

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +    P    Y++L+  +    ++ D  +  L+  K G+++D  +Y +LI  F K    
Sbjct: 421 LNIGVCPNDITYNILLDGHCKHGKVRDTEE--LKSAK-GMVSDFGVYTSLINEFVKKKSA 477

Query: 322 KNVY 325
           K+ +
Sbjct: 478 KSYH 481



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 20/284 (7%)

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPD-------IVTYGIMV------DVLCKAGRV 251
           +L+     D   P    + +   D G  PD        +  GI V      D++ +   V
Sbjct: 36  LLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLPSV 95

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA      +      P +  +++L+       ++  A + F EM + G+   V  +N L
Sbjct: 96  PEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTL 155

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           +   CKA+   N   +   M   G+AP+  T    + GL   G   +A  +F  M   CE
Sbjct: 156 MSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM---CE 212

Query: 372 ----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                +    T +I   C+ G++    ++   M  +     +  ++ L+NG C    +  
Sbjct: 213 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 272

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +  ++E+M + G++P   T+  L     KEG  D    ++++M+
Sbjct: 273 ANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMS 316


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 201/389 (51%), Gaps = 6/389 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK--QQNYEHSVRAYHSMIESLAKIRQYQI 115
           GI+++  +   ++  + +AG        W EK   +N       Y+S++++  +    + 
Sbjct: 196 GIQLNEAVFCSIISGYASAGNNEAAE-HWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 254

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           +  L+  M  +    N+  +  ++  +A ++  E+ +  F+ ++  G++   A +  ++ 
Sbjct: 255 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVK 314

Query: 175 ALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
              K+ N+ KA +I + M K    P+   Y+++++G+ +  +   A +++ +MV  G  P
Sbjct: 315 LFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 374

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DIVTY I+V   CKAGR+D+ALG+++++ +    PT   Y+ ++  Y     I+ A++ F
Sbjct: 375 DIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVF 434

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             ++  G+   V  YN+L+    KA + +N   +L +M + GV PN R+   +  G    
Sbjct: 435 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARA 494

Query: 354 GETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G+ ++A+ +F+RM K   A D   Y  ++K  C+ G +++A +V++ +       +  T+
Sbjct: 495 GDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITY 554

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             +++G   KG +S +  LL+DM + G  
Sbjct: 555 CTMLDGWARKGELSKARDLLKDMQKHGFH 583



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 161/344 (46%), Gaps = 11/344 (3%)

Query: 122 AMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
           AMR   +  NV  +  ++  YA  + +E AV     M   G+  N A F  ++S    + 
Sbjct: 156 AMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAG 215

Query: 181 NVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           N   A+  F+  K +  +P    Y+ +++ + +  N+     +  +M + G   ++  Y 
Sbjct: 216 NNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYT 275

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +++   +    ++ L     + +    PT+  Y  +V  +     +  A+D   EM+K+
Sbjct: 276 TVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKH 335

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  +  +Y  ++  + +   F   ++V +DM S G+ P+  T NI+++     G  D+A
Sbjct: 336 GVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKA 395

Query: 360 YRVFR-----RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             V       R++   E    TYT ++  + +GG ++KA +V+  +K     P + +++ 
Sbjct: 396 LGVLENIQANRLLPTIE----TYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNS 451

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           L++GL     + ++ ++L++M+  G+ P+  ++  L +   + G
Sbjct: 452 LLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAG 495



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 162/357 (45%), Gaps = 6/357 (1%)

Query: 15  CISFLRRYNSSEPSTEALDAA---KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLE 71
           C+SF  R  +   S  A       K  +K    +  + +   +D+ G+  +  I   +++
Sbjct: 290 CLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 349

Query: 72  KFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
            +   G     F  W +      +  +  Y+ ++ +  K  +      ++  ++  R+L 
Sbjct: 350 GYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLP 409

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            +ET+  I+  Y +   +++A+  F+ ++  G+   + ++N LLS L K++ +  A+ + 
Sbjct: 410 TIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 469

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  +P+ ++Y+ L EG+ +  ++ +A  +F+ M       DIV YG ++   CK+
Sbjct: 470 DEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 529

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +  A+ + + +     +     Y  ++  +  +  +  A D   +M+K+G   D   Y
Sbjct: 530 GAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICY 589

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
            + I A  ++   + V   L  M  K +  N+RT   +++G +   + D+A   + +
Sbjct: 590 TSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQ 646



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 160/354 (45%), Gaps = 2/354 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           +VNA +      +  + +++  YAR      A  TF  M+   +  N+  +  L+ A  +
Sbjct: 119 IVNAFQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAE 178

Query: 179 SKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++++  A    + M  + I  +   +  ++ G+    N   A   F +       P  + 
Sbjct: 179 ARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV 238

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  +V   C+AG ++    ++  M+    +    +Y+ +++ +      E  +  F  ++
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 298

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G+    A Y  ++  F KA        +L++M+  GV+PN     +I++G    G+  
Sbjct: 299 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 358

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A++V+  M+    + D  TY +++  FC+ G ++KA  V + ++  R +P++ T++ ++
Sbjct: 359 AAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSIL 418

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +G    G +  +  + + +   G+RP   ++  L   L K  + +  + + ++M
Sbjct: 419 DGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEM 472



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAY 100
           + + +++LD  L  +G+  +      + E +  AG +  AF  F+   K++N    + AY
Sbjct: 462 MENARLMLDEML-ANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM-KKENLAIDIVAY 519

Query: 101 HSMIESLAKI----RQYQIMWDLVNA-MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
            +++++  K     R  ++   + +A ++  R+    T+C ++  +AR  ++ +A     
Sbjct: 520 GALLKACCKSGAMQRAVEVFQQITDAGLKHNRI----TYCTMLDGWARKGELSKARDLLK 575

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            MQK+G   +   +   + A  +S +  +  E    M+++ +  +++TY+ L+ GW    
Sbjct: 576 DMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAA 635

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +  +A   + +   +G   D      ++  L      +  LG
Sbjct: 636 DPDQAISCYEQAKASGLQLDSALSNCLLSGLISCASQNSTLG 677


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 212/492 (43%), Gaps = 84/492 (17%)

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
           E+VE+ LE       ++   FK A K  +++       SMIES A    +  +  L++ +
Sbjct: 49  EVVENPLE-----APISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRI 103

Query: 124 RTKRMLNVE-TFCIIMRKYARVQKVEEAV------------------------------- 151
           R +  + +E +F ++ R Y +    ++AV                               
Sbjct: 104 RLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGL 163

Query: 152 ---------YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
                    Y  N      ++ N  +FN ++ ALCK + V +A E+F  M +R  +PD  
Sbjct: 164 YHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGY 223

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------------- 247
           TY  L++G  K+  +  A  +  EM   GC+P  V Y +++D LCK              
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283

Query: 248 ---------------------AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
                                 G++D+A+ +++ M S+ C P    Y  L++    + R 
Sbjct: 284 FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            DAV     ME+ G   +  +Y+ LI    K  K +    + + M  KG  PN    +++
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++GL   G+ +EA  +  RMI   C  +A TY+ ++K F + G  E+A +VWK M     
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC 463

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
             +   +SVLI+GLC  G V ++ ++   M+  GI+P    +  + K L   G  D    
Sbjct: 464 SRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALK 523

Query: 466 LQEKMNLLVKEP 477
           L  +M L  +EP
Sbjct: 524 LYHEM-LCQEEP 534



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 175/386 (45%), Gaps = 31/386 (8%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +I+ L K      +  LV+ M  K  + N  T+  ++       K+++AV     M 
Sbjct: 260 YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMV 319

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
                 N   +  L++ L K +    A  +   M++R +  +   YS+L+ G  K+    
Sbjct: 320 SSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAE 379

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  ++R+M + GC P+IV Y ++VD LC+ G+ +EA  I+  M ++ C P ++ YS L+
Sbjct: 380 EAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLM 439

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +      E+AV  + EM+K G   +   Y+ LI   C   + K    V   M + G+ 
Sbjct: 440 KGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIK 499

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC------EADADTYTMMIKMFCQGGELE 391
           P++   + I+ GL G G  D A +++  M  LC      + D  TY +++   C   ++ 
Sbjct: 500 PDTVAYSSIIKGLCGIGSMDAALKLYHEM--LCQEEPKSQPDVVTYNILLDGLCMQKDIS 557

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGL------CDKG---------------IVSDSCV 430
           +A  +   M  +   P + T +  +N L      CDKG                VS +C 
Sbjct: 558 RAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACT 617

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++E M+ K + P   T+  + + + K
Sbjct: 618 IVEVMLGKYLAPKTSTWAMIVREICK 643


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 191/375 (50%), Gaps = 3/375 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++I  L K+ + +   +L+     K +  +V  +  I+    + + V +A   ++  
Sbjct: 300 SYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEK 359

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
               +  ++  +N L+S  C    ++ A ++F+ M  +  IPD  T+SIL++G+ KD N+
Sbjct: 360 VSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNI 419

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +   M+     PD+VTY  ++D  C    V++A  I  +M           Y+++
Sbjct: 420 KEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIM 479

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +     +++A+  F EM    I  DV  Y++LI   CK+ +      ++ +M+ +G 
Sbjct: 480 INGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQ 539

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T N IL+ L  +   D+A  +  ++  +    D +TYT+++K  CQ G+LE A K
Sbjct: 540 QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARK 599

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V++ + +K +   ++ ++V+I G CDKG+  ++  LL  M E G  P  +T+  +   L 
Sbjct: 600 VFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLF 659

Query: 456 KEGREDVLKFLQEKM 470
           ++   D+ + L  +M
Sbjct: 660 EKDENDMAEKLLREM 674



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 173/347 (49%), Gaps = 3/347 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I+ + K +     +DL +   +KR+  +V T+  ++  +  V K+++A+  FN
Sbjct: 333 VVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFN 392

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M    +  ++  F+ L+   CK  N+++A+ +   M  + I PD  TYS L++G+    
Sbjct: 393 KMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVN 452

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A  IF  M   G   ++ +Y IM++  CK   VDEA+ + K M      P    YS
Sbjct: 453 EVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYS 512

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+       RI  A++   EM   G   D+  YN+++ A CK +       +L  +  +
Sbjct: 513 SLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQ 572

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G+ P+  T  I++ GL   G+ ++A +VF  + +K    D   YT+MI+ FC  G  ++A
Sbjct: 573 GIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEA 632

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             +   M+    IP   T+ ++I  L +K     +  LL +MI +G+
Sbjct: 633 LALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 168/346 (48%), Gaps = 6/346 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T    ++ +    ++ +A++  + +   G   +  ++  L++ LCK    + A E+    
Sbjct: 265 TLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRN 324

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             + + PD   Y+ +++G  KD ++  A +++ E V     PD+ TY  ++   C  G++
Sbjct: 325 DGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKL 384

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A+ +   M S    P  + +S+LV  +  +  I++A +    M K  I  DV  Y++L
Sbjct: 385 KDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSL 444

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           +  +C  N+      +   M+ +GV  N ++ NI++NG       DEA ++F+ M  K  
Sbjct: 445 MDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQI 504

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY+ +I   C+ G +  A ++   M  +   P + T++ +++ LC K  V  +  
Sbjct: 505 FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAIT 564

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVK 475
           LL  +  +GIRP   T+  L K L + G+ ED  K  ++   LLVK
Sbjct: 565 LLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFED---LLVK 607



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 1/287 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K+ + PD+ T +  ++G+     + +A     +++  G + D V+YG +++ LCK G  
Sbjct: 255 LKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGET 314

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL +++  D  + +P   +Y+ ++     +  + DA D + E     I  DV  YNAL
Sbjct: 315 KAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNAL 374

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           I  FC   K K+   +   M SK + P+  T +I+++G    G   EA  V   M+K   
Sbjct: 375 ISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSI 434

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY+ ++  +C   E+ KA  ++  M  +    ++ +++++ING C   +V ++  
Sbjct: 435 KPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMK 494

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           L ++M  K I P   T+  L   L K GR      L ++M+   ++P
Sbjct: 495 LFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQP 541



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V++Y+ MI    KI+       L   M  K++  +V T+  ++    +  ++  A+   
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELV 531

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M   G   ++  +N +L ALCK  +V KA  +   +K + I PD  TY+IL++G  + 
Sbjct: 532 DEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQS 591

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  AR++F +++  G N D+  Y +M+   C  G  DEAL ++  M+   C P +  Y
Sbjct: 592 GKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTY 651

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
            +++ +   ++  + A     EM   G+L  VA+ + L+ +
Sbjct: 652 EIIILSLFEKDENDMAEKLLREMIMRGLL--VALTDDLVAS 690


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 199/399 (49%), Gaps = 6/399 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV-ETFCII 137
           +A  FF WA++Q  Y H    Y+SM+E L+K +  Q    ++  M+ + +    E F  +
Sbjct: 189 VALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRV 248

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRF 196
           M  Y+R  ++ +A+    +MQ+ GV  NL   N  +    ++  + KA    + M+    
Sbjct: 249 MVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGI 308

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P+  TY+ ++ G+     +  A E+  +M   GC PD V+Y  ++  LCK  R+ E   
Sbjct: 309 VPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRD 368

Query: 257 IVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           ++K M       P    Y+ L+H     +  ++A+    + ++ G   D   Y+A++ A 
Sbjct: 369 LMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHAL 428

Query: 316 CKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEAD 373
           CK  +      ++ +M SKG   P+  T   ++NG    GE D+A ++ + M     + +
Sbjct: 429 CKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPN 488

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             +YT ++   C+ G+  +A ++    +   + P+  T+SV+++GL  +G +S++C ++ 
Sbjct: 489 TVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVR 548

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           +M+ KG  P       L + L ++GR  +  KF++E +N
Sbjct: 549 EMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 587



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 175/385 (45%), Gaps = 5/385 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCII 137
           A  F K A+ ++ +      Y +++ +L K  +     DL+N M +K     +V T+  +
Sbjct: 402 ALWFLKDAQ-EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAV 460

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           +  + R+ +V++A     VM  +G   N  ++  LL+ +C++    +A+E+ +  ++ + 
Sbjct: 461 VNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWW 520

Query: 198 -PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+S TYS+++ G  ++  L  A ++ REMV  G  P  V   +++  LC+ GR  EA  
Sbjct: 521 SPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARK 580

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
            ++   +  C      ++ ++H +   + ++ A+    +M      ADV  Y  L+    
Sbjct: 581 FMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLG 640

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376
           K  +      ++K M  KG+ P   T   +++     G+ D+   +  +MI   +     
Sbjct: 641 KKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRT-I 699

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I+  C  G+LE+A  +   +          T   L+ G   KG+   +  +   M 
Sbjct: 700 YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMF 759

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED 461
            + + P  +   KL K L+ +G+ D
Sbjct: 760 NRNLIPDVKMCEKLSKRLVLKGKVD 784



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 115/239 (48%), Gaps = 13/239 (5%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           ++++   R  +  EA          G   N+  F  ++   C++  +  A  + D   D 
Sbjct: 564 LLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD---DM 620

Query: 196 FI----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++     D  TY+ L++  GK   +  A E+ ++M+  G +P  VTY  ++   C+ G+V
Sbjct: 621 YLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKV 680

Query: 252 DEALGIVKSMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYN 309
           D+ + I++ M S   CR    IY+ ++    V  ++E+A DT L ++ +    +D     
Sbjct: 681 DDLVAILEKMISRQKCRT---IYNQVIEKLCVLGKLEEA-DTLLGKVLRTASRSDAKTCY 736

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           AL+  + K     + Y+V   M ++ + P+ + C  +   L+ +G+ DEA ++  R+++
Sbjct: 737 ALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVE 795


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 195/430 (45%), Gaps = 43/430 (10%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM---WDLVNAMRTKRMLNVETFCI 136
           A  +FK   +  N  H+    + M+E L   R+ + M   +DL+     +R  NV+T+ I
Sbjct: 107 ALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRR--NVDTYLI 164

Query: 137 IMRKY----------ARVQKVEEAVYTFNV-------------------------MQKYG 161
           I +            + ++K+ EA +  N                          M   G
Sbjct: 165 IFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEG 224

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           +  +L  F+ L+ A  K +N++    + + M+   + P+  TY+I +   G+D  +  A 
Sbjct: 225 LKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAY 284

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            I + M D GC PD+VTY +++D LC A ++D+A+ +   M S+  +P    Y  L+  +
Sbjct: 285 RIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKF 344

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                ++     + EME +G   DV  +  L+ A CKA +    + +L  M  +GV PN 
Sbjct: 345 SDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNL 404

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N +++GL+     D+A  +F  M  L  E  A TY ++I    + G   KA + ++ 
Sbjct: 405 HTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEK 464

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           MK +   P++   +  +  L + G + ++  +  ++   G+ P   T+  + K   K G+
Sbjct: 465 MKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524

Query: 460 ED-VLKFLQE 468
            D  +K L E
Sbjct: 525 VDEAIKLLSE 534



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 204/443 (46%), Gaps = 19/443 (4%)

Query: 48  VVLDTALDQSGIRVSPEIVED------VLEKFRNAGTLAFC----FFKWAEK------QQ 91
           ++  +   + G+R +P  +E       VL  +   G + F     F K A +       +
Sbjct: 164 IIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSE 223

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEA 150
             + S++ + +++ +  K R  + +  L+  M +  +  N+ T+ I +R   R  K++EA
Sbjct: 224 GLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEA 283

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
                 M   G   ++  +  L+ ALC ++ +  A  +F  MK     PD  TY  LL+ 
Sbjct: 284 YRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDK 343

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           +    +L +  +I+ EM   G  PD+VT+ I+V+ LCKAGR++EA  ++ +M      P 
Sbjct: 344 FSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPN 403

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ L+      NR++DA+D F  ME  G+      Y  LI    K+          +
Sbjct: 404 LHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFE 463

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG 388
            M ++G+APN   CN  L  L   G   EA  +F  +     A D+ TY MM+K + + G
Sbjct: 464 KMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVG 523

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++++A K+   M   +  P +   + LI+ L   G V ++  +   M E  + P+  T+ 
Sbjct: 524 QVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYN 583

Query: 449 KLRKLLIKEGREDVLKFLQEKMN 471
            L   L KEG+      L E MN
Sbjct: 584 ILLAGLGKEGQIQKAVQLFESMN 606



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 148/285 (51%), Gaps = 3/285 (1%)

Query: 99   AYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
             Y+S+I++  K  +   ++DL + M T+    N  T+ +++    +  ++++A+  +  +
Sbjct: 827  TYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNL 886

Query: 158  QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
                 +     F  L+  L KS  +  A E+FD M      P+S  Y+IL+ G+GK  ++
Sbjct: 887  VSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHV 946

Query: 217  PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
              A E F+ MV  G  PD+ +Y I+VD+LC AGRVD+AL   + +      P    Y+++
Sbjct: 947  DTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLM 1006

Query: 277  VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            ++  G   R E+A+  F EM+  GI+ D+  YN+LI         +   ++ +++   G+
Sbjct: 1007 INGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGL 1066

Query: 337  APNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMM 380
             PN  T N ++ G    G ++ AY ++++ M+  C+ +  T+  +
Sbjct: 1067 KPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 181/386 (46%), Gaps = 25/386 (6%)

Query: 79  LAFCFFKWAEKQQNYEHSVRA--------------YHSMIESLAKIRQYQIMWDLVNAMR 124
           +AFC F  A K QN E  V                 HS+ + +  +  ++ + +L N + 
Sbjct: 65  VAFCGF--ALKSQNEELVVNGKPRKGSSSDEVLGVLHSISDPIHALFYFKSVGELPNVVH 122

Query: 125 TKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           T      ET C  M +  RV + VE+  + F++MQ+  + +N+  +  +  +L     +R
Sbjct: 123 T-----TET-CNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLR 176

Query: 184 KAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +A    + M++  F+ ++ +Y+ L+    +      A E++R MV  G  P + T+  ++
Sbjct: 177 QAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALM 236

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
               K   +   +G+++ M+S   RP  + Y++ +   G + +I++A      M+ +G  
Sbjct: 237 VASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCG 296

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  Y  LI A C A K  +   +   M S    P+  T   +L+     G  D+  ++
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356

Query: 363 FRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           +  M     A D  T+T+++   C+ G + +AF +   M+ +  +P++HT++ LI+GL  
Sbjct: 357 WTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLR 416

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETF 447
              + D+  L  +M   G+ P+  T+
Sbjct: 417 ANRLDDALDLFSNMESLGVEPTAYTY 442



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 136/282 (48%), Gaps = 3/282 (1%)

Query: 172  LLSALCKSKNVRKAQEIF-DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            ++  LCK K    A+ +F    K+  + P  K Y++L++G+ +  N+  A  +F EM   
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 230  GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
            GC PD  TY  ++D   K+G+++E   +   M +  C+P +  Y++++      NR++ A
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKA 879

Query: 290  VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +D +  +           +  LI    K+ +  + + +   M   G  PNS   NI++NG
Sbjct: 880  MDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNG 939

Query: 350  LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                G  D A   F+RM+K     D  +YT+++ + C  G ++ A   ++ +K     P 
Sbjct: 940  YGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999

Query: 409  MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +  ++++INGL       ++  L  +M  +GI P   T+  L
Sbjct: 1000 LVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSL 1041



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 38/366 (10%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           +L+KF + G L      W E + + Y   V  +  ++ +L K  +    +DL++ MR + 
Sbjct: 340 LLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQG 399

Query: 128 ML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +L N+ T+  ++    R  ++++A+  F+ M+  GV      +  L+    KS +  KA 
Sbjct: 400 VLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKAL 459

Query: 187 EIFDCMKDRFI------------------------------------PDSKTYSILLEGW 210
           E F+ MK R I                                    PDS TY+++++ +
Sbjct: 460 ETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCY 519

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   +  A ++  EM    C PD++    ++D L KAGRV+EA  +   M+     PT 
Sbjct: 520 SKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTV 579

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y++L+   G E +I+ AV  F  M  +G   +   +N L+   CK ++     ++   
Sbjct: 580 VTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYK 639

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
           M +    P+  T N I++G I + +   A  +F +M KL   D  T   ++    + G++
Sbjct: 640 MTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQI 699

Query: 391 EKAFKV 396
           E AF++
Sbjct: 700 EDAFRI 705



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 173/354 (48%), Gaps = 8/354 (2%)

Query: 69   VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
            VL K +        F K+  K+   + +++ Y+ +I+   ++   ++ W+L   M++   
Sbjct: 763  VLCKHKKTSVARNVFVKFT-KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGC 821

Query: 129  L-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
              +  T+  ++  + +  K+ E    ++ M   G   N   +N ++S L KS  + KA +
Sbjct: 822  APDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMD 881

Query: 188  IF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
            ++ + +   F P   T+  L++G  K   L  A E+F  MV  GC P+   Y I+V+   
Sbjct: 882  LYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYG 941

Query: 247  KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            K G VD A    K M     RP    Y++LV    +  R++DA+  F ++++ G+  D+ 
Sbjct: 942  KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001

Query: 307  MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN-IILN-GLIGRGETDEAYRVFR 364
             YN +I    ++ + +    +  +M ++G+ P+  T N +ILN G++G  E  EA +++ 
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIE--EAGKIYE 1059

Query: 365  RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
             +  +  + +  TY  +I+ +   G  E A+ ++K M +    P+  TF+ L N
Sbjct: 1060 ELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQLPN 1113



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 154/315 (48%), Gaps = 2/315 (0%)

Query: 158  QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDPNL 216
            ++ GV   L  +N L+    +  NV  A  +F+ MK     PD+ TY+ L++  GK   +
Sbjct: 782  KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841

Query: 217  PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
                +++ EM+  GC P+ +TY +++  L K+ R+D+A+ +  ++ S    PT   +  L
Sbjct: 842  NELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPL 901

Query: 277  VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            +       R++DA + F  M   G   + A+YN L+  + K           K M  +G+
Sbjct: 902  IDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961

Query: 337  APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
             P+ ++  I+++ L   G  D+A   F ++ +   + D   Y +MI    +    E+A  
Sbjct: 962  RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALS 1021

Query: 396  VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
            ++  M+ +  +P ++T++ LI  L   G++ ++  + E++   G++P+  T+  L +   
Sbjct: 1022 LFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYT 1081

Query: 456  KEGREDVLKFLQEKM 470
              G  ++   + +KM
Sbjct: 1082 LSGNSELAYGIYKKM 1096



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 186/451 (41%), Gaps = 77/451 (17%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E  V   +S+I++L K  + +  W +   M    +   V T+ I++    +  ++++AV 
Sbjct: 541 EPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQ 600

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DC--------------- 191
            F  M  +G + N   FN LL  LCK+  V  A ++F      +C               
Sbjct: 601 LFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFI 660

Query: 192 --------------MKDRFIPDSKTYSILLEGWGKDPNLPRAREI--------------- 222
                         MK    PD  T   LL G  K   +  A  I               
Sbjct: 661 KQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRS 720

Query: 223 FREMVDTG----------------------CNPDIVTYGIMVDVLCKAGRVDEALGI-VK 259
           F E V  G                      C  D V   I + VLCK  +   A  + VK
Sbjct: 721 FWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPI-IKVLCKHKKTSVARNVFVK 779

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
                  +PT  +Y++L+  +   + +E A + F EM+  G   D   YN+LI A  K+ 
Sbjct: 780 FTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSG 839

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYT 378
           K   ++ +  +M ++G  PN+ T N++++ L+     D+A  ++  ++    +    T+ 
Sbjct: 840 KINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFG 899

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I    + G L+ A +++  M      P+   +++L+NG    G V  +C   + M+++
Sbjct: 900 PLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKE 959

Query: 439 GIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           GIRP  +++  L  +L   GR +D L + ++
Sbjct: 960 GIRPDLKSYTILVDILCIAGRVDDALHYFEK 990


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 169/332 (50%), Gaps = 4/332 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+C +M    +  +++EAV   + MQ  G   +   FN L++ LCK  ++ +A ++ 
Sbjct: 233 DVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLV 292

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +  IP+  TY+ L+ G      L +A  +   MV + C P++VTYG +++ L K 
Sbjct: 293 DNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQ 352

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR  +   ++  M+        ++YS L+     E + ++A+  F EM   G   +  +Y
Sbjct: 353 GRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVY 412

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           +A+I   C+  K  +   VL +M +KG  PN+ TC+ ++ G    G +  A  V++ M K
Sbjct: 413 SAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAK 472

Query: 369 LCEADADT-YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                 +  Y+++I   C+ G++++A  VW  M  K   P +  +S +INGL   G+V D
Sbjct: 473 HNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVED 532

Query: 428 SCVLLEDMIEKGI--RPSGETFGKLRKLLIKE 457
           +  L  +M+ +G   +P   T+  L   L K+
Sbjct: 533 AMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQ 564



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 210/463 (45%), Gaps = 24/463 (5%)

Query: 4   VYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSP 63
           +  + N + S    FL     S  S  A+ + K+I    L+  +   +T   ++GI   P
Sbjct: 12  ILKALNNLFSFPSKFLSLSMHSNFSAHAIPSTKTIETEPLNHTQHC-NTTDQENGIEPDP 70

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
            I + +              FK   K  +Y      ++S+I + A +  ++ +  +++ M
Sbjct: 71  PISDKI--------------FKSGPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRM 116

Query: 124 RT-KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKN 181
           +  KR++  + F +I + Y +    E+AV  F+ M  ++   +   +FN +L+ + +   
Sbjct: 117 KCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGL 176

Query: 182 VRKAQEIFDCMKD----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
             +A E ++ +         P+  T++++++   K   +  A ++FR+M    C PD+ T
Sbjct: 177 FHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYT 236

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++D LCKA R+DEA+ ++  M    C P+   ++VL++    +  +  A      M 
Sbjct: 237 YCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMF 296

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G + +   YN LI   C   K +    +L  M S    PN  T   I+NGL+ +G   
Sbjct: 297 LKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRAL 356

Query: 358 EAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +   V   M +   C  +   Y+ +I    + G+ ++A  ++K M +K +  +   +S +
Sbjct: 357 DGACVLALMEERGYC-VNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAV 415

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           I+GLC  G   D+  +L +M  KG  P+  T   L K   + G
Sbjct: 416 IDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAG 458



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 3/221 (1%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           K +EA++ F  M   G   N   ++ ++  LC+      A E+   M ++   P++ T S
Sbjct: 389 KSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCS 448

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L++G+ +  N  RA E++++M       + V Y +++  LCK G+V EA+ +   M   
Sbjct: 449 SLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGK 508

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI--LADVAMYNALIGAFCKANKFK 322
            C+P    YS +++   +   +EDA+  + EM   G     DV  YN L+   CK +   
Sbjct: 509 GCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSIS 568

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
               +L  M  +G  P+  TC I L  L  + +  +  R F
Sbjct: 569 RAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDGREF 609



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 17/198 (8%)

Query: 273 YSVLVHTYGVENRIEDAVDTF------LEMEKNGILADVAMYNALI--GAFCKANKFKNV 324
           + V+   YG  +  E AVD F       E ++ G   + ++ N +I  G F +A +F N 
Sbjct: 128 FIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFN-SVLNVIIQEGLFHRALEFYN- 185

Query: 325 YRVLKDMNSKGVA--PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
                 + +KGV+  PN  T N+++  +   G  D+A +VFR M I+ CE D  TY  ++
Sbjct: 186 ----HVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLM 241

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   +++A  +   M++    PS  TF+VLINGLC KG +S +  L+++M  KG  
Sbjct: 242 DGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCI 301

Query: 442 PSGETFGKLRKLLIKEGR 459
           P+  T+  L   L  +G+
Sbjct: 302 PNEVTYNTLIHGLCLKGK 319



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 1/160 (0%)

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           I  +V  +N +I A CK     +  +V +DM  +   P+  T   +++GL      DEA 
Sbjct: 195 ISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAV 254

Query: 361 RVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            +   M I  C     T+ ++I   C+ G+L +A K+   M LK  IP+  T++ LI+GL
Sbjct: 255 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGL 314

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           C KG +  +  LL+ M+     P+  T+G +   L+K+GR
Sbjct: 315 CLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGR 354



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 4/182 (2%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           + YE +   Y ++I+ L +  +     ++++ M  K    N  T   +M+ +        
Sbjct: 403 KGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHR 462

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           AV  +  M K+  TQN   ++ L+  LCK   V++A  ++  M  +   PD   YS ++ 
Sbjct: 463 AVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMIN 522

Query: 209 GWGKDPNLPRAREIFREMVDTGCN--PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           G      +  A +++ EM+  G +  PD+VTY I+++ LCK   +  A+ ++ SM    C
Sbjct: 523 GLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGC 582

Query: 267 RP 268
            P
Sbjct: 583 DP 584



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--- 190
           + +++    +  KV+EA+  +  M   G   ++ A++ +++ L  +  V  A ++++   
Sbjct: 482 YSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEML 541

Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           C      PD  TY+ILL    K  ++ RA ++   M+D GC+PD+VT  I + +L
Sbjct: 542 CQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRML 596


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 173/372 (46%), Gaps = 5/372 (1%)

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRK 140
           CF+   EK      ++   +S++    K+ + +  W L   M R +   +V TF I++  
Sbjct: 173 CFYTMKEK--GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINV 230

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
             +  K+++A      M+  GV  N+  +N ++   C S  V  A  I   MK + I PD
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD 290

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           S TY  L+ G  K   L  A +IF EMV  G  P  V Y  ++D  C  G +D A     
Sbjct: 291 SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      PT   Y+ L+H   +E R ++A     E+++ GI  D   YN LI  +C+  
Sbjct: 351 EMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA 410

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
             K  + +  +M + G+ P  +T   +L+ L  +    EA  +F+++  +    DA  + 
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFN 470

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C    ++ AF++ K M   +  P   TF+ ++ G C +G V ++  L ++M  +
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 439 GIRPSGETFGKL 450
           GI+P   +F  L
Sbjct: 531 GIKPDHISFNTL 542



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 184/396 (46%), Gaps = 44/396 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  ++ MI  L K  + +   D V  M T  +  N+ T+  I+  Y    +VE A    
Sbjct: 220 SVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAIL 279

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M++  +  +   +  L+S +CK   + +A +IF+ M  + + P +  Y+ L++G+   
Sbjct: 280 TTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNK 339

Query: 214 PNLPRARE-----------------------------------IFREMVDTGCNPDIVTY 238
            NL  A                                     + +E+ + G +PD +TY
Sbjct: 340 GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY 399

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I+++  C+     +A  +   M ++  +PT   Y+ L+H    +NR+++A D F ++  
Sbjct: 400 NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G+L D  M+NALI   C  +  K  + +LKDM+   V P+  T N I+ G    G+ +E
Sbjct: 460 EGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEE 519

Query: 359 AYRVF----RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           A  +F    RR IK    D  ++  +I  + + G+++ AF+V   M    F P++ T++ 
Sbjct: 520 ARELFDEMKRRGIK---PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNA 576

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           L+ GLC       +  LL++M+ KG+ P   T+  L
Sbjct: 577 LVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 198/417 (47%), Gaps = 9/417 (2%)

Query: 62  SPEIVEDVLEKFRNAGTL-----AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           SP+    +L +    GT       F F   +  +  ++ S+  +  +I+S   + +    
Sbjct: 112 SPKPALHLLRQALGGGTTNSIREIFEFLAASRDRLGFKSSI-VFDYLIKSCCDMNRADEA 170

Query: 117 WDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
           ++    M+ K +L  +ET   ++  + ++ + E A   +  M +  +  ++  FN +++ 
Sbjct: 171 FECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINV 230

Query: 176 LCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK   ++KA++    M+   + P+  TY+ ++ G+     +  A  I   M      PD
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD 290

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
             TYG ++  +CK GR++EA  I + M     RP++ IY+ L+  +  +  ++ A     
Sbjct: 291 SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           EM K GI   ++ YN+LI A     +      ++K++  KG++P++ T NI++NG     
Sbjct: 351 EMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA 410

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
              +A+ +   M+    +    TYT ++ +  +   +++A  ++K +  +  +P    F+
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFN 470

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            LI+G C    V  +  LL+DM    + P   TF  + +   +EG+ +  + L ++M
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 22/367 (5%)

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN-------L 166
           Q++ D +N    K + +  T C+ +   AR+   + A++        G T +       L
Sbjct: 81  QVVLDFLNHFHHK-LSDARTLCLAIVIVARLPSPKPALHLLRQALGGGTTNSIREIFEFL 139

Query: 167 AA------------FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           AA            F+ L+ + C      +A E F  MK++  +P  +T + LL  + K 
Sbjct: 140 AASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKL 199

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  ++ EM        + T+ IM++VLCK G++ +A   V  M+++  +P    Y
Sbjct: 200 NRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTY 259

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + +VH Y    R+E A      M++  I  D   Y +LI   CK  + +   ++ ++M  
Sbjct: 260 NTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQ 319

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KG+ P++   N +++G   +G  D A      M+K        TY  +I         ++
Sbjct: 320 KGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDE 379

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  + K ++ K   P   T+++LING C       + +L ++M+  GI+P+ +T+  L  
Sbjct: 380 AECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLH 439

Query: 453 LLIKEGR 459
           +L K+ R
Sbjct: 440 VLSKKNR 446



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 3/306 (0%)

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ 114
           Q G+R S  I   +++ F N G L     +K    ++    ++  Y+S+I +L   ++  
Sbjct: 319 QKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTD 378

Query: 115 IMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
               ++  ++ K +  +  T+ I++  Y R    ++A    + M   G+      +  LL
Sbjct: 379 EAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438

Query: 174 SALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
             L K   +++A ++F     +  +PD+  ++ L++G   + N+  A E+ ++M      
Sbjct: 439 HVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVP 498

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD VT+  ++   C+ G+V+EA  +   M     +P    ++ L+  Y     I+DA   
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM   G    V  YNAL+   CK  +      +LK+M SKG+ P+  T   ++ G+  
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618

Query: 353 RGETDE 358
               DE
Sbjct: 619 VNIPDE 624


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 179/369 (48%), Gaps = 3/369 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  +  +L +++ Y+ +  L   M    +  +V +  I++  + R+  V+      
Sbjct: 90  SIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVL 149

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             + K G+  N+  F+ L++  C    + +A E+FD M  R + P+  +YSI+++G  + 
Sbjct: 150 GKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRV 209

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                  ++   M   GC PD+V Y  +VD LCK   V+EA+ I   M  T   PT   Y
Sbjct: 210 GKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTY 269

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H      R ++A     EM+   I+ D+  ++ LI   CK  +      +LK M  
Sbjct: 270 TSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTE 329

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            GV P+  T N ++NG   R E  EA +VF  MI K    D  ++++++  +C+   +++
Sbjct: 330 MGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDE 389

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M  +  IP   +++ LI+GLC      ++  L +DM   G  P+  T+  L  
Sbjct: 390 AKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLD 449

Query: 453 LLIKEGRED 461
            L K+G  D
Sbjct: 450 CLSKQGYLD 458



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 4/276 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y S+I  L  + +++  + L+N M+   ++ ++  F +++    +  +V EA    
Sbjct: 265 TVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVIL 324

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGK 212
             M + GV  ++A +N L++  C    V +A+++F+ M  K R +PD  ++SIL+ G+ K
Sbjct: 325 KTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR-MPDVFSFSILVNGYCK 383

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              +  A+++F EM   G  PD V+Y  ++  LC+A R  EA  + K M S    P    
Sbjct: 384 AKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVT 443

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS+L+     +  ++ A+  F  ME +G+  D+  YN +I   CK  KFK+   +  +++
Sbjct: 444 YSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELS 503

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            KG+ PN+  C   ++G+   G  DEA++ FR+M K
Sbjct: 504 VKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 162/319 (50%), Gaps = 8/319 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV ++ II++   RV K  E +     M+  G   ++  +N ++  LCK + V +A  IF
Sbjct: 195 NVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIF 254

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF---REMVDTGCNPDIVTYGIMVDVL 245
             MK    +P   TY+ L+ G     NL R +E F    EM      PD+V + +++D++
Sbjct: 255 CKMKGTGILPTVVTYTSLIHGL---RNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIM 311

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK G V EA  I+K+M      P    Y+ L++ Y +   + +A   F  M   G + DV
Sbjct: 312 CKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDV 371

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             ++ L+  +CKA +     ++  +M  +G+ P++ + N +++GL       EA  +F+ 
Sbjct: 372 FSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKD 431

Query: 366 M-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M       +  TY++++    + G L++A  +++ M+     P + T++++I+G+C  G 
Sbjct: 432 MHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGK 491

Query: 425 VSDSCVLLEDMIEKGIRPS 443
             D+  L  ++  KG++P+
Sbjct: 492 FKDARELFAELSVKGLQPN 510



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 164/385 (42%), Gaps = 44/385 (11%)

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
               +Y H  R + ++ ++L+          +VN   T  + ++  F  +     R++  
Sbjct: 57  HSSSSYRHKNRTFRNINDALSAFNH------MVN---TNPLPSIVKFGELFSALVRMKHY 107

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           +  V     M+  G++ ++ +   L++  C+  +V     +    +K    P+  T+S L
Sbjct: 108 KTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTL 167

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+  +  + RA E+F  MV  G  P++ +Y I++  LC+ G+  E + +++ M    C
Sbjct: 168 INGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGC 227

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   IY+ +V     +  + +AV  F +M+  GIL  V  Y +LI       ++K  + 
Sbjct: 228 EPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFG 287

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +L +M    + P                                  D   ++++I + C+
Sbjct: 288 LLNEMKGGNIMP----------------------------------DLVAFSVLIDIMCK 313

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            GE+ +A  + K M      P + T++ L+NG C +  V ++  + E MI KG  P   +
Sbjct: 314 EGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFS 373

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMN 471
           F  L     K  R D  K L ++M 
Sbjct: 374 FSILVNGYCKAKRIDEAKQLFDEMT 398



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 40/204 (19%)

Query: 279 TYGVENR----IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +Y  +NR    I DA+  F  M     L  +  +  L  A  +   +K V  + K M   
Sbjct: 61  SYRHKNRTFRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMA 120

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
           G++                                   D  + T++I  FC+   ++  F
Sbjct: 121 GIS----------------------------------HDVLSLTILINCFCRLCHVDYGF 146

Query: 395 KVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            V  K +KL    P++ TFS LING C +G +  +  L + M+ +G +P+  ++  + K 
Sbjct: 147 SVLGKIIKLG-LEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKG 205

Query: 454 LIKEGREDVLKFLQEKMNLLVKEP 477
           L + G+   +  L E M ++  EP
Sbjct: 206 LCRVGKTTEVIKLLEHMKVVGCEP 229


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 2/332 (0%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPD 199
           Y R   +  A   F +M   G  +    +  LL  L  +  VR+A  +F  M+ D   PD
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           +  Y+ ++ G  +      A  +  E +  G  P+IV Y  ++D  C AG ++ AL + +
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            MD   C P    Y+ L+H      ++E A+  F  M + G+  +V  Y ALI   C   
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
             +  +R+L  M + G+ PN  T +++++ L  R + +EA      ++K   + +   YT
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C+ G+++ A ++ + M  + F+P  H++S LI+GLC +  +S + ++LEDM+EK
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           GI+ S  T+  +   L++E   +  K + +KM
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFDKM 448



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 156/309 (50%), Gaps = 2/309 (0%)

Query: 164 QNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
           +NL  +  L++A C + ++  A Q +   +     PDS  Y+  + G+ +   L  A  +
Sbjct: 70  RNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRV 129

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M   GC     TY  ++  L  AG V EA+ +   M +  C P + +Y+ +VH    
Sbjct: 130 FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCE 189

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             R E+A     E   NG   ++ +YNALI  +C A + ++  +V + M+    +PN RT
Sbjct: 190 AGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRT 249

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
              +++GL   G+ + A  +F RM++   E +  TYT +I+  C  G L+ AF++   M+
Sbjct: 250 YTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLME 309

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
               +P+  TFSVLI+ LC +  V ++ + L  +++KG++ +   +  L   L K G+ D
Sbjct: 310 TNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKID 369

Query: 462 VLKFLQEKM 470
               L +KM
Sbjct: 370 AADELMQKM 378



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 165/334 (49%), Gaps = 2/334 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+  +  ++  Y    ++E A+  F  M     + N+  +  L+  LCKS  V +A  +F
Sbjct: 211 NIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLF 270

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +  + P+  TY+ L++G   + +L  A  +   M   G  P+  T+ +++D LCK 
Sbjct: 271 SRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKR 330

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            +V+EA   + S+     +    +Y+ L+       +I+ A +   +M   G + D   Y
Sbjct: 331 EKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           ++LI   C+  K      +L+DM  KG+  +  T  II++ L+    ++   ++F +MI 
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIA 450

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TYT+ ++ +C+ G +E A  +   M  +   P++ T++ LI G  + G+VS 
Sbjct: 451 TGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQ 510

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +    E M+ KG +P+ +++  L +L++K+   D
Sbjct: 511 AFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSD 544



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 155/359 (43%), Gaps = 39/359 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +   E +V  Y ++I+        Q  + L++ M T  ++ N  TF +++    + +KVE
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EA      + K GV  N   +  L+  LCK+  +  A E+   M  + F+PD+ +YS L+
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  +   L +A  +  +M++ G     VTY I++D L +    +    I   M +T   
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+V V +Y  E R+EDA    ++M   G+  ++  YN LI  +         +  
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
            + M  KG  PN                                   D+YT+++++  + 
Sbjct: 515 FEVMVGKGWKPNE----------------------------------DSYTVLLRLVVKK 540

Query: 388 GELEKAFKVWKYMKLKRFIPSMH---TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
              + +  +WK   +K    S +    + +LI GL  KG V++   LL  M E G +PS
Sbjct: 541 SSSDNSVDIWKIADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS 599


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 182/377 (48%), Gaps = 5/377 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y  ++E++ K   ++    +++ MR K    N+ T+ +I+    R  +V++A  
Sbjct: 174 QPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARD 233

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             N +  YG   +  ++  LL  LC SK     +E+F + M+   +P+  T+ +L+  + 
Sbjct: 234 LLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFC 293

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   + RA ++ ++M +  C  +     I+++ +CK GRVD+A   + +M S  C P + 
Sbjct: 294 RGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTI 353

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++       R  DA +   EM +N    +   +N  I   C+    +    +++ M
Sbjct: 354 SYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 413

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G      T N ++NG   +G  D A  +FR M   C+ +  TYT ++   C    L+
Sbjct: 414 QEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNAERLD 471

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++   M  +   P++ TF+VL+N  C KG + ++  L+E M+E G  P+  T+  L 
Sbjct: 472 AAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLF 531

Query: 452 KLLIKE-GREDVLKFLQ 467
             + K+   ED L+ L 
Sbjct: 532 DGITKDCSSEDALELLH 548



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 2/302 (0%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           V  +   +  L+  LC    V  A  + D M  R   P+  TY++LLE   K+    +A 
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +  EM   GC P+IVTY ++++ +C+ GRVD+A  ++  + S  C+P +  Y+ L+   
Sbjct: 198 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGL 257

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
               R +D  + F EM +   + +   ++ LI  FC+    +   +VL+ M     A N+
Sbjct: 258 CASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNT 317

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
             CNI++N +  +G  D+A++    M    C  D  +YT ++K  C+      A ++ K 
Sbjct: 318 TLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKE 377

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M      P+  TF+  I  LC KG++  + +L+E M E G      T+  L      +G 
Sbjct: 378 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGH 437

Query: 460 ED 461
            D
Sbjct: 438 ID 439



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 155/335 (46%), Gaps = 3/335 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R   R  +  +A       +  G   ++ A+N L++  C+  ++  A+ +   M    
Sbjct: 81  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP--V 138

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ TY+ L+        +  A  +  +M+  GC P++VTY ++++ +CK    ++A+ 
Sbjct: 139 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMA 198

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M +  C P    Y+V+++    E R++DA D    +   G   D   Y  L+   C
Sbjct: 199 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLC 258

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
            + ++ +V  +  +M  K   PN  T ++++      G  + A +V ++M +  C  +  
Sbjct: 259 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTT 318

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              ++I   C+ G ++ AFK    M      P   +++ ++ GLC     +D+  LL++M
Sbjct: 319 LCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEM 378

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +     P+  TF     +L ++G  +    L E+M
Sbjct: 379 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 413



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 155/334 (46%), Gaps = 31/334 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETF----CIIMRKYARVQKVEEAVYT 153
           +Y ++++ L +  ++    +L+  M R     N  TF    CI+ +K      +E+A+  
Sbjct: 354 SYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQK----GLIEQAIML 409

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
              MQ++G T  +  +N L++  C   ++  A E+F  M  +  P++ TY+ LL G    
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK--PNTITYTTLLTGLCNA 467

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+  EM+   C P++VT+ ++V+  C+ G +DEA+ +V+ M    C P    Y
Sbjct: 468 ERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITY 527

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L      +   EDA++    +   G+  DV  ++++IG   K ++ +   ++      
Sbjct: 528 NTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQD 587

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G+ P +   N IL GL  R E D A      M+   C  +  TY ++I+   + G L++
Sbjct: 588 IGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKE 647

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           A                     L++ LC +G+VS
Sbjct: 648 AQD-------------------LLSMLCSRGVVS 662



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 181/413 (43%), Gaps = 44/413 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y ++++ L   +++  + +L   M  K  M N  TF +++R + R   VE A+     M
Sbjct: 249 SYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQM 308

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            ++    N    N +++++CK   V  A +  + M      PD+ +Y+ +L+G  +    
Sbjct: 309 TEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERW 368

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+E+ +EMV   C P+ VT+   + +LC+ G +++A+ +++ M    C      Y+ L
Sbjct: 369 NDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNAL 428

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V+ + V+  I+ A++ F  M       +   Y  L+   C A +      ++ +M  +  
Sbjct: 429 VNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDC 485

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N+++N    +G  DEA  +  +M++  C  +  TY  +     +    E A +
Sbjct: 486 PPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALE 545

Query: 396 VWKYMKLKRFIPSMHTFSVLIN-----------------------------------GLC 420
           +   +  K   P + TFS +I                                    GLC
Sbjct: 546 LLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLC 605

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            +  + ++   L  M+  G  P+  T+  L + L +EG   +LK  Q+ +++L
Sbjct: 606 KRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREG---LLKEAQDLLSML 655



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 34/269 (12%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDST---------------VCR---------- 267
           PD+     ++  LC+ GR  +A  ++++ + +                CR          
Sbjct: 73  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 132

Query: 268 -------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
                  P ++ Y+ L+       R+ DA+    +M + G   +V  Y  L+ A CK + 
Sbjct: 133 IGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSG 192

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
           F+    VL +M +KG  PN  T N+I+NG+   G  D+A  +  R+    C+ D  +YT 
Sbjct: 193 FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTT 252

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           ++K  C     +   +++  M  K  +P+  TF +LI   C  G+V  +  +L+ M E  
Sbjct: 253 LLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE 312

Query: 440 IRPSGETFGKLRKLLIKEGR-EDVLKFLQ 467
              +      +   + K+GR +D  KFL 
Sbjct: 313 CATNTTLCNIVINSICKQGRVDDAFKFLN 341



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  ++ + L+       R  DA       E +G   DV  YN L+  +C+        R+
Sbjct: 73  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 132

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           +  M    VAP++ T   ++  L  RG   +A  +   M++  C+ +  TYT++++  C+
Sbjct: 133 IGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
               E+A  V   M+ K   P++ T++V+ING+C +G V D+  LL  +   G +P   +
Sbjct: 190 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVS 249

Query: 447 FGKLRKLLIKEGR-EDVLKFLQEKM 470
           +  L K L    R +DV +   E M
Sbjct: 250 YTTLLKGLCASKRWDDVEELFAEMM 274


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 2/313 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +++ T+  I+   A+ +K+EEAV     +   G T  +A +N LL+ LCK   + +A ++
Sbjct: 265 IDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 324

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              + D    PD  TY+ L++G GK+     A ++F+EM   G   D V Y  ++  L +
Sbjct: 325 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQ 384

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G++ +A  + K+M S  C P     S ++       RI  AV  F  ME  G+  +  +
Sbjct: 385 TGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV 444

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+ALI   CKA K      +L  M      P++ T NI+++GL   G+ + A   F  M+
Sbjct: 445 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 504

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +  C+ D  TY ++I  FC+ G  + A  V+  M   R   ++ T+  LI+GLC +  ++
Sbjct: 505 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLT 564

Query: 427 DSCVLLEDMIEKG 439
            + +  + M E+G
Sbjct: 565 KASLYFQHMKERG 577



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 39/362 (10%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           K+EEAV     +   G T  +A +N LL+ LCK   + +A ++   + D    PD  TY+
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 205 ILLEGWGKDP-----------------------------------NLPRAREIFREMVDT 229
            L++G GK+                                     +P+A  +++ M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC PD+VT   M+D L KAGR+  A+ I KSM++    P   +YS L+H      +++ A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++   +M+K     D   YN LI   CK+   +       +M   G  P+  T NI+++G
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 350 LIGRGETDEAYRVFRR--MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
               G TD A     +   I  C  D  TYT ++    +  ++E+A  + + +      P
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTP 300

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFL 466
           ++ T++ L+NGLC  G + ++  LL  +++ G  P   T+  L   L KE R  +  K  
Sbjct: 301 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 360

Query: 467 QE 468
           +E
Sbjct: 361 KE 362



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 184/408 (45%), Gaps = 9/408 (2%)

Query: 63  PEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           P++V    +++    AG +  A   FK  E +    + V  Y ++I  L K R+     +
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV-VYSALIHGLCKARKMDCALE 182

Query: 119 LVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           ++  M+      +  T+ +++    +   VE A   F+ M + G   ++  +N L+S  C
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 242

Query: 178 KSKNVRKAQEIF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           K+ N   A      +   +    D  TY+ +++   K+  +  A  +  ++   GC P I
Sbjct: 243 KAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTI 302

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY  +++ LCK GR++EA+ +++ +    C P    Y+ L+   G E R  +A   F E
Sbjct: 303 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 362

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G+  D   Y ALI    +  K      V K M S G  P+  T + +++GL   G 
Sbjct: 363 MALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 422

Query: 356 TDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
              A R+F+ M  +    +   Y+ +I   C+  +++ A ++   MK     P   T+++
Sbjct: 423 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 482

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           LI+GLC  G V  +    ++M+E G +P   T+  L     K G  D 
Sbjct: 483 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDA 530



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 175/379 (46%), Gaps = 38/379 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T   ++   ++  ++  AV  F  M+  G+  N   ++ L+  LCK++ +  A E+ 
Sbjct: 125 DVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 184

Query: 190 DCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK  F  PD+ TY++L++G  K  ++  AR  F EM++ GC PD+ TY I++   CKA
Sbjct: 185 AQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKA 244

Query: 249 G------------------------------------RVDEALGIVKSMDSTVCRPTSFI 272
           G                                    +++EA+ +++ + +  C PT   
Sbjct: 245 GNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIAT 304

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++      R+E+A+D   ++  NG   DV  Y +LI    K  +    Y++ K+M 
Sbjct: 305 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 364

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
            +G+A ++     ++  L+  G+  +A  V++ M    C  D  T + MI    + G + 
Sbjct: 365 LRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG 424

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A +++K M+ +   P+   +S LI+GLC    +  +  +L  M +    P   T+  L 
Sbjct: 425 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 484

Query: 452 KLLIKEGREDVLKFLQEKM 470
             L K G  +  +   ++M
Sbjct: 485 DGLCKSGDVEAARAFFDEM 503



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 4/242 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEAVYTF 154
           V  Y S+I+ L K ++    + L   M   R L ++T C   ++R+  +  K+ +A   +
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMAL-RGLALDTVCYTALIRELLQTGKIPQASSVY 395

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M  +G   ++   + ++  L K+  +  A  IF  M+ R   P+   YS L+ G  K 
Sbjct: 396 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 455

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A E+  +M    C PD +TY I++D LCK+G V+ A      M    C+P  + Y
Sbjct: 456 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 515

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L+  +      + A   F +M  +   A+V  Y ALI   CK  +        + M  
Sbjct: 516 NILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKE 575

Query: 334 KG 335
           +G
Sbjct: 576 RG 577


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 206/451 (45%), Gaps = 46/451 (10%)

Query: 62  SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL---AKIRQYQIMWD 118
           S E V   L+ F +  + +F +FK      N  H+    + M+E+L    K+ +   ++D
Sbjct: 84  SSEEVTRGLKSFPDTDS-SFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFD 142

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           L+     KR  N  T+  I +  +    +++A Y    M+++G   N  ++NGL+  L K
Sbjct: 143 LMQKRIIKRDTN--TYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLK 200

Query: 179 SKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK-------------------DPN--- 215
           S+   +A E++  M  + F P  +TYS L+ G GK                    PN   
Sbjct: 201 SRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYT 260

Query: 216 -------------LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
                        +  A EI + M D GC PD+VTY +++D LC A ++D A  + + M 
Sbjct: 261 FTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK 320

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYNALIGAFCKANKF 321
           +   +P    Y  L+  +  +NR  D+V  F  EMEK+G + DV  +  L+ A CKA  F
Sbjct: 321 TGRHKPDRVTYITLLDRFS-DNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNF 379

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
              +  L  M  +G+ PN  T N ++ GL+     D+A  +F  M  L  +  A TY + 
Sbjct: 380 GEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF 439

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I  + + G+   A + ++ MK K   P++   +  +  L   G   ++  +   + + G+
Sbjct: 440 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGL 499

Query: 441 RPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
            P   T+  + K   K G  ++ +K L E M
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 189/404 (46%), Gaps = 38/404 (9%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + +  S++ Y S++  L K R    +  L+  M T  +  NV TF I +R   R  K+ E
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK---------------D 194
           A      M   G   ++  +  L+ ALC ++ +  A+E+F+ MK               D
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336

Query: 195 RF---------------------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           RF                     +PD  T++IL++   K  N   A +    M D G  P
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           ++ TY  ++  L +  R+D+AL +  +M+S   +PT++ Y V +  YG       A++TF
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M+  GI  ++   NA + +  KA + +   ++   +   G+ P+S T N+++      
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 516

Query: 354 GETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           GE DEA ++   M++  CE D      +I    +   +++A+K++  MK  +  P++ T+
Sbjct: 517 GEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTY 576

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           + L+ GL   G + ++  L E M++KG  P+  TF  L   L K
Sbjct: 577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 167/343 (48%), Gaps = 5/343 (1%)

Query: 80   AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL-VNAMRTKRMLNVETFCIIM 138
            A   F+   K    +  +  Y+ +I  L +    +I  D+ +    T  + +V T+  ++
Sbjct: 768  ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827

Query: 139  RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDR-F 196
              Y +  K++E    +  M  +    N    N ++S L K+ NV  A +++ D M DR F
Sbjct: 828  DAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDF 887

Query: 197  IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
             P + TY  L++G  K   L  A+++F  M+D GC P+   Y I+++   KAG  D A  
Sbjct: 888  SPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACA 947

Query: 257  IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
            + K M     RP    YSVLV    +  R+++ +  F E++++G+  DV  YN +I    
Sbjct: 948  LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007

Query: 317  KANKFKNVYRVLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
            K+++ +    +  +M  S+G+ P+  T N ++  L   G  +EA +++  + +   E + 
Sbjct: 1008 KSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1067

Query: 375  DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
             T+  +I+ +   G+ E A+ V++ M    F P+  T+  L N
Sbjct: 1068 FTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 154/313 (49%), Gaps = 8/313 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARV 144
           + Q    ++  Y+++I  L ++ +     +L   M +   L V+    T+ + +  Y + 
Sbjct: 390 RDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMES---LGVKPTAYTYIVFIDYYGKS 446

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTY 203
                A+ TF  M+  G+  N+ A N  L +L K+   R+A++IF  +KD   +PDS TY
Sbjct: 447 GDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 506

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +++++ + K   +  A ++  EM++ GC PD++    +++ L KA RVDEA  +   M  
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKE 566

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              +PT   Y+ L+   G   +I++A++ F  M + G   +   +N L    CK ++   
Sbjct: 567 MKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTL 626

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383
             ++L  M   G  P+  T N I+ GL+  G+  EA   F +M KL   D  T   ++  
Sbjct: 627 ALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPG 686

Query: 384 FCQGGELEKAFKV 396
             +   +E A+K+
Sbjct: 687 VVKASLIEDAYKI 699



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 152/354 (42%), Gaps = 40/354 (11%)

Query: 137  IMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            I+R   +   V  A   F    K  GV   L  +N L+  L ++  +  AQ++F  +K  
Sbjct: 755  IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814

Query: 196  -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
              IPD  TY+ LL+ +GK   +    E+++EM    C  + +T+ I++  L KAG VD+A
Sbjct: 815  GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874

Query: 255  L------------------------GIVKS------------MDSTVCRPTSFIYSVLVH 278
            L                        G+ KS            M    CRP   IY++L++
Sbjct: 875  LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILIN 934

Query: 279  TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             +G     + A   F  M K G+  D+  Y+ L+   C   +        K++   G+ P
Sbjct: 935  GFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994

Query: 339  NSRTCNIILNGLIGRGETDEAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            +    N+I+NGL      +EA  +F  M   +    D  TY  +I      G +E+A K+
Sbjct: 995  DVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI 1054

Query: 397  WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +  ++     P++ TF+ LI G    G    +  + + M+  G  P+  T+ +L
Sbjct: 1055 YNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 178/421 (42%), Gaps = 47/421 (11%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEA 150
           E  V   +S+I +L K  +    W +   MR K M     V T+  ++    +  K++EA
Sbjct: 535 EPDVIVVNSLINTLYKADRVDEAWKMF--MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEA 592

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEG 209
           +  F  M + G   N   FN L   LCK+  V  A + +F  M    +PD  TY+ ++ G
Sbjct: 593 IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG 652

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRP 268
             K+  +  A   F +M      PD VT   ++  + KA  +++A  I+ + + +   +P
Sbjct: 653 LVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQP 711

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD------------------------ 304
            +  +  L+ +   E  I++AV     +  NGI  D                        
Sbjct: 712 ANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTL 771

Query: 305 -------------VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
                        +  YN LIG   +A+  +    V   + S G  P+  T N +L+   
Sbjct: 772 FEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG 831

Query: 352 GRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW-KYMKLKRFIPSM 409
             G+ DE + +++ M    CEA+  T+ ++I    + G ++ A  ++   M  + F P+ 
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            T+  LI+GL   G + ++  L E M++ G RP+   +  L     K G  D    L ++
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKR 951

Query: 470 M 470
           M
Sbjct: 952 M 952



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 182/415 (43%), Gaps = 43/415 (10%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+   + +V  Y++++  L K  + Q   +L   M  K    N  TF  +     +  +V
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
             A+     M   G   ++  +N ++  L K+  V++A   F  MK    PD  T   LL
Sbjct: 625 TLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLL 684

Query: 208 EGWGKDPNLPRAREIFREMV-DTGCNP-DIVTYGIMVDVLCKAGRVDEAL---------G 256
            G  K   +  A +I    + +    P ++    ++  +L +AG +D A+         G
Sbjct: 685 PGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAG-IDNAVSFSERLVANG 743

Query: 257 IVKSMDSTVC----------------------------RPTSFIYSVLVHTYGVENRIED 288
           I +  DS +                             +P    Y++L+      + IE 
Sbjct: 744 ICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEI 803

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A D FL+++  G + DVA YN L+ A+ K+ K   ++ + K+M++     N+ T NI+++
Sbjct: 804 AQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVIS 863

Query: 349 GLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           GL+  G  D+A  ++  ++  +     A TY  +I    + G L +A ++++ M      
Sbjct: 864 GLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR 923

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           P+   +++LING    G    +C L + M+++G+RP  +T+  L   L   GR D
Sbjct: 924 PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVD 978


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 177/347 (51%), Gaps = 3/347 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+S+I+   K  + + +  LV  MR      +V T+  ++  + +  ++E A   F 
Sbjct: 229 VVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFA 288

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M++ GV  N+  F+  + A CK+  VR+A ++F  M+ + + P+  TY+ L++G  K  
Sbjct: 289 EMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAG 348

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  EMV  G   ++VTY ++VD LCK G+V EA  + + M+    R    +Y+
Sbjct: 349 RLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYT 408

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H + V    E A+    EM+  G+  DV++Y ALI   C   K      +L  M+  
Sbjct: 409 TLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDEC 468

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKA 393
           G+ PN+     I++      +  EA  + ++M+      +  TY  ++   C+ G +++A
Sbjct: 469 GLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEA 528

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
              +  M      P++  ++ L++GLC  G +  + +LL++MI+KG+
Sbjct: 529 ISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGM 575



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 158/326 (48%), Gaps = 4/326 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
           +++AV     +++  V  N    N +L  L + ++   A  +F+ +     P+  T++I+
Sbjct: 144 LDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLP---APNVFTFNIM 200

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++   K+ +L  AR +   M   GC+PD+VTY  ++D   K G ++E   +V  M    C
Sbjct: 201 IDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGC 260

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP    Y+ LV+ +    R+E A   F EM++ G++A+V  ++  + AFCK    +   +
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMK 320

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +   M  KG+ PN  T   +++G    G  D+A  +   M++     +  TYT+++   C
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLC 380

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G++ +A  V++ M+      +   ++ LI+G         +  LL +M +KG+     
Sbjct: 381 KEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVS 440

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471
            +G L   L    + D  K L  KM+
Sbjct: 441 LYGALIWGLCNLQKLDEAKSLLNKMD 466



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 186/450 (41%), Gaps = 59/450 (13%)

Query: 45  SPKVVL-DTALDQSGIRVSPEIVEDVLEKFRNAG---------TLAFCFFKWAEKQQNYE 94
           SP VV  ++ +D  G     E VE ++ + R  G          L  CF K+   ++ Y 
Sbjct: 226 SPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYS 285

Query: 95  H-----------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
           +           +V  + + +++  K    +    L   MR K M  N  T+  ++    
Sbjct: 286 YFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTC 345

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSK 201
           +  ++++A+   N M + GV  N+  +  L+  LCK   V +A+++F  M+   I  +  
Sbjct: 346 KAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANEL 405

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            Y+ L+ G     N  RA  +  EM D G   D+  YG ++  LC   ++DEA  ++  M
Sbjct: 406 LYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKM 465

Query: 262 DSTVCRPTSFIYS-----------------------------------VLVHTYGVENRI 286
           D    +P + IY+                                    LV        I
Sbjct: 466 DECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSI 525

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A+  F +M   G+  +V  Y AL+   CK  +      +L +M  KG++ ++  C  +
Sbjct: 526 DEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSL 585

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++G + +G   +A+ +  +MI    + D   YT  +  FC    +++A +V   M     
Sbjct: 586 MDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGI 645

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            P    ++ LIN     G + ++ +L  +M
Sbjct: 646 TPDAVVYNCLINKCQKLGNMEEAAILQNEM 675


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 186/376 (49%), Gaps = 8/376 (2%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           HS+I+ L K  +      L+  M +     ++ T  +++ +  +  K++EA      M +
Sbjct: 53  HSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNR 112

Query: 160 YGVTQNLAAF--NGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPN 215
              T+  + F  N LL++LCK+K V +A  IF  M  +   +PD  +YSIL++G+ K   
Sbjct: 113 TISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE 172

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L RA +++++M+D  C P++ TY   ++ L + GR+ +A G+ + M S  C P    YS 
Sbjct: 173 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+H + +  + + A + F  M   G   +   YN L+   CK +K    + + + M  +G
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
             P+  T   +L G    G+ ++A  VF  M+ K  + D   Y  ++K F + G+  +A 
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAR 352

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPSGETFGKLRKL 453
           ++++ M  +   P   + +++I+GL     + D+  + E M  + G  P   T+  L   
Sbjct: 353 QLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFG 412

Query: 454 LIKEGR-EDVLKFLQE 468
           L  E R  + +K  +E
Sbjct: 413 LCGEQRLSEAMKVFKE 428



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 5/333 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYT 153
           S  +Y+S++ SL K ++    + + + M ++R +  +V ++ I++  + ++ ++  A   
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
           +  M       N+  +N  L+ L +   +  AQ +++ M      PD  TYS L+ G+  
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSL 239

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                +A E+F  M+  GC P+ VTY  ++  LCK  + DEA  + + M    C P    
Sbjct: 240 ARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++ +    +IE AV+ F EM   G   DV  YN L+  F +A K     ++ + M 
Sbjct: 300 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMV 359

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGEL 390
           S+   P++ + NI+++GL      D+A  VF RM +   C  D  TY  +I   C    L
Sbjct: 360 SRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL 419

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            +A KV+K +   +  P  H F+VL+  +   G
Sbjct: 420 SEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 8/294 (2%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK----TYSILLEGWGKDPNLPRAR 220
           N  A+   L  LCKS  + +A E    M++           T   +++   K   +  A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS--FIYSVLVH 278
            +   M+  G  PD+ T+ ++++ LCKA ++ EA   ++ M+ T+    S  F Y+ L++
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLN 129

Query: 279 TYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +     ++  A   F  M  +  ++ DV  Y+ LI  FCK ++     ++ K M      
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 189

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N  LNGL+ +G   +A  V+  MI   C  D  TY+ +I  F    + ++A ++
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHEL 249

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++ M  +   P+  T++ L++GLC +    ++  L   M+E+G  P   T+  L
Sbjct: 250 FEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTL 303


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 155/296 (52%), Gaps = 3/296 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+  LC       A  + D M + R +PD  TY+ILLE   K     +A ++  EM D G
Sbjct: 166 LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 225

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C PDIVTY ++V+ +C+ GRVD+A+  +K++ S  C P +  Y++++       R EDA 
Sbjct: 226 CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 285

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           +   EM + G   +V  +N LI   C+    +    VL+ +   G +PNS + N +L+  
Sbjct: 286 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAF 345

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             + + D+A      M+ + C  D  +Y  ++   C+ GE++ A ++   +K K   P +
Sbjct: 346 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVL 405

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLK 464
            +++ +I+GL   G   ++  LL +M+ KG++P   T+  +   L +E R ED ++
Sbjct: 406 ISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 461



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 175/393 (44%), Gaps = 39/393 (9%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESL-AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143
           +W   ++  E       ++I  L  + R    +  L   +R + + +V T+ I++    +
Sbjct: 149 RWC-AERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 207

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
               ++A+   + M+  G T ++  +N +++ +C+   V  A E    +      P++ +
Sbjct: 208 RSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS 267

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+I+L+G         A E+  EM   GC P++VT+ +++  LC+ G V+ AL +++ + 
Sbjct: 268 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 327

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
              C P S  Y+ L+H +  + +++ A+     M   G   D+  YN L+ A C++ +  
Sbjct: 328 KYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 387

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-------------- 368
               +L  +  KG AP   + N +++GL   G+T EA  +   M+               
Sbjct: 388 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 447

Query: 369 --LCEAD--------------------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
             LC  D                       Y  +I   C+  E   A  ++ YM     +
Sbjct: 448 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 507

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           P+  T+++LI GL  +G++ ++  LL+++  +G
Sbjct: 508 PNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 146/306 (47%), Gaps = 4/306 (1%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           ++ A+N +++  C +  V  A+    C +     D+ T   L+ G         A  +  
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRW--CAERAVERDAYTCDTLIRGLCGRGRTANALAVLD 184

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           EM+   C PD+VTY I+++  CK     +A+ ++  M    C P    Y+V+V+    E 
Sbjct: 185 EMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 244

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R++DA++    +   G   +   YN ++   C A ++++   ++ +M  KG  PN  T N
Sbjct: 245 RVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFN 304

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           ++++ L  +G  + A  V  ++ K  C  ++ +Y  ++  FC+  +++KA      M  +
Sbjct: 305 MLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSR 364

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
              P + +++ L+  LC  G V  +  LL  + +KG  P   ++  +   L K G+ ++ 
Sbjct: 365 GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA 424

Query: 463 LKFLQE 468
           L+ L E
Sbjct: 425 LELLNE 430



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 10/271 (3%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ T + L++          AR +        C PD++ Y  M+   C AG+VD A   
Sbjct: 96  PDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMMAGYCGAGQVDAAR-- 148

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            +          ++    L+       R  +A+    EM +   + DV  Y  L+ A CK
Sbjct: 149 -RWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 207

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
            + +K   ++L +M  KG  P+  T N+++NG+   G  D+A    + +    CE +  +
Sbjct: 208 RSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS 267

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y +++K  C     E A ++   M  K   P++ TF++LI+ LC KG+V  +  +LE + 
Sbjct: 268 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 327

Query: 437 EKGIRPSGETFGKLRKLLIKEGRED-VLKFL 466
           + G  P+  ++  L     K+ + D  + FL
Sbjct: 328 KYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 31/150 (20%)

Query: 347 LNGLIGRGETDEAYRVF---------------------------RRMIKLCEADADTYTM 379
           L  L+ RGE DEA R+                            RR++  C  D   Y  
Sbjct: 74  LRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNA 133

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           M+  +C  G+++ A +      ++R     +T   LI GLC +G  +++  +L++M+ + 
Sbjct: 134 MMAGYCGAGQVDAARRWCAERAVER---DAYTCDTLIRGLCGRGRTANALAVLDEMLRRR 190

Query: 440 IRPSGETFGKLRKLLIK-EGREDVLKFLQE 468
             P   T+  L +   K  G +  +K L E
Sbjct: 191 CVPDVVTYTILLEATCKRSGYKQAMKLLDE 220


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 171/350 (48%), Gaps = 2/350 (0%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +S+ + L K  + ++ W +   M    + +V T+  ++  Y RV KVEE  +    M++ 
Sbjct: 202 NSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEK 261

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRA 219
           G   NL  ++ +++ LC++ +V +A E+   M ++  +PD+  Y+ L++G+ +       
Sbjct: 262 GCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEG 321

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
           + +  EM   G  PD V Y  +++   K   +  A  + + M +   +  +F Y  L+H 
Sbjct: 322 KSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHG 381

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
                 +E A D F EM   GI  D+  YN LI  + K    +  Y +L ++  + +  N
Sbjct: 382 LCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTAN 441

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
           +  C  I+NGL   G+   A  +F+ MI    + +   YT ++K   + G  E+A K+  
Sbjct: 442 AYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILG 501

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            MK +   P +  ++ +I G C  G + +    L +MI KG++P+  T+G
Sbjct: 502 VMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYG 551



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 180/364 (49%), Gaps = 3/364 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY ++I    K       + +   M  +++ LN  T+  ++    ++  +E+A   F+ M
Sbjct: 339 AYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM 398

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
              G+  ++  +N L+    K +N+ KA E+  +  K+    ++     ++ G     +L
Sbjct: 399 TMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDL 458

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA E+F+EM+  G  P+IV Y  +V  L K GR +EA+ I+  M      P  F Y+ +
Sbjct: 459 TRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTV 518

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +    ++E+     +EM   G+  +V  Y A I  +C+A + +   R   +M   G+
Sbjct: 519 IIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGI 578

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           APN   C  +++G    G T +A+  FR M+ +    D  T++++I    + G+L++A  
Sbjct: 579 APNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMG 638

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V+  +  K  +P + T++ LI+ LC +G +  +  L +DM +KGI P+  T+  L   L 
Sbjct: 639 VFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLC 698

Query: 456 KEGR 459
           K G 
Sbjct: 699 KLGE 702



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 170/335 (50%), Gaps = 2/335 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F I++  Y +   + EAV  F   +       LA  N L   L K   V    +++  M 
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGML 225

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
              +PD  TY+ L+  + +   +   + +  +M + GC P++VTY +++  LC+AG VDE
Sbjct: 226 GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDE 285

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           AL + +SM +    P ++IY+ L+  +  + R  +      EM   G+  D   Y ALI 
Sbjct: 286 ALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALIN 345

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
            F K +     ++V ++M ++ +  N+ T   +++GL   G+ ++A  +F  M  +  + 
Sbjct: 346 GFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKP 405

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  TY  +I+ + +   +EKA+++   +K +    + +    ++NGLC  G ++ +  L 
Sbjct: 406 DIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELF 465

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
           ++MI  G++P+   +  + K L+KEGR E+ +K L
Sbjct: 466 QEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKIL 500



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 175/384 (45%), Gaps = 2/384 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K Q     V  Y+++I    K  + +     +  M  K +  NV T+   +  Y R  ++
Sbjct: 504 KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEM 563

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           + A  +F  M   G+  N      L+   CK  N  KA   F CM D+  +PD +T+S+L
Sbjct: 564 QAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  K+  L  A  +F E++D G  PD+ TY  ++  LCK G +  A  +   M     
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGI 683

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ L++       I  A + F  + + G+  +   Y+ +I  +CK+      ++
Sbjct: 684 NPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQ 743

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +   M   GV P+S     +++G    G T++A  +F  M++   A    +  +I  F +
Sbjct: 744 LFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFK 803

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+L +A+++ + M      P+  T+++LI   C  G + ++  L  +M ++ + P+  T
Sbjct: 804 LGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLT 863

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  L     + GR   +  L ++M
Sbjct: 864 YTSLLHGYNRIGRRSEMFSLFDEM 887



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 188/411 (45%), Gaps = 9/411 (2%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKW-AEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           SGI  +  I  D+++ +   G     F K+     Q     V+ +  +I  L+K  + Q 
Sbjct: 576 SGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQE 635

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
              + + +  K ++ +V T+  ++    +   ++ A    + M K G+  N+  +N L++
Sbjct: 636 AMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALIN 695

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
            LCK   + KA+E+FD + ++ +  +S TYS ++ G+ K  NL  A ++F  M   G  P
Sbjct: 696 GLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPP 755

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           D   Y  ++D  CKAG  ++AL +   M  +     P    ++ L+  +    ++ +A  
Sbjct: 756 DSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPA---FNALIDGFFKLGKLIEAYQ 812

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
              +M  N I  +   Y  LI   C     K   ++  +M  + V PN  T   +L+G  
Sbjct: 813 LVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYN 872

Query: 352 GRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G   E + +F  M+ +  + D   +++M+    + G   KA K+   M  +      +
Sbjct: 873 RIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN 932

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            +++LI+ LC    +S+   +L+++ ++G + S  T G L     + GR D
Sbjct: 933 LYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTD 983



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 36/309 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+++I  L K+ +     +L + +  K +  N  T+  I+  Y +   + EA   F
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLF 745

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
           + M+  GV  +   +  L+   CK+ N  KA  +F  M +  I  +  ++ L++G+ K  
Sbjct: 746 HGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLG 805

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A ++  +MVD    P+ VTY I+++  C  G + EA  +   M      P    Y+
Sbjct: 806 KLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYT 865

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILAD------------------------------ 304
            L+H Y    R  +    F EM   GI  D                              
Sbjct: 866 SLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSE 925

Query: 305 -----VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
                  +Y  LI A CK N    V +VL ++  +G   +  TC  ++      G TDEA
Sbjct: 926 GVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEA 985

Query: 360 YRVFRRMIK 368
            RV   M++
Sbjct: 986 LRVLESMVR 994



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 26/379 (6%)

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           I SL K + +Q    L+ +      LN +   +++++   +       +   V  +   +
Sbjct: 48  ITSLLKQKNWQF---LIESSPLPNKLNPDVVFLVIKQNQVIDPKRLHGFFNWVNSRTVFS 104

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
           QNL+ F+ L   LC S     A  + + M D   P  K    +++              +
Sbjct: 105 QNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILDSIIK-------------CY 151

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
           +E+  +  +  +V + I++D+  K G ++EA+ +         +   FI  +       +
Sbjct: 152 KEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLG-----AKTNEFIVGLACCNSLSK 206

Query: 284 NRIE-DAVDTFLEMEKN---GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           + ++ + V+ F ++ K     I+ DV  Y  LI A+C+  K +    VL DM  KG  PN
Sbjct: 207 DLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPN 266

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T ++++ GL   G+ DEA  + R M  K    D   Y  +I  FC+     +   +  
Sbjct: 267 LVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLD 326

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M      P    ++ LING   +  +  +  + E+M  + I+ +  T+  L   L K G
Sbjct: 327 EMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIG 386

Query: 459 REDVLKFLQEKMNLLVKEP 477
             +  + L  +M ++  +P
Sbjct: 387 DLEKAEDLFSEMTMMGIKP 405


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 179/381 (46%), Gaps = 25/381 (6%)

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           +E ++ I+   ++W L      +R   +  FC   R     Q ++E      ++++  ++
Sbjct: 240 MEEVSHIKPNVVIWPL-----ERRTCMINGFCSSGRWSEAQQLLQE------MLERKKIS 288

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREI 222
            ++  +N L++A  K     +A+E++D M  R  IP + TYS +++G+ K   L  A  +
Sbjct: 289 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           F  M   GC+PDI+T+  ++   C+A RVD+ + ++  M        +  Y+ L+H +  
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 408

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK-------- 334
              +  A D   EM  +G+  +V   N L+   C   K K+   + K M           
Sbjct: 409 VGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASH 468

Query: 335 ---GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
              GV P+ +T NI+++GLI  G+  EA  ++  M  +    D  TY  +I   C+   L
Sbjct: 469 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRL 528

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++A +++  M  K F P++ TF+ LING C  G V D   L  +M  +GI  +  T+  L
Sbjct: 529 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 588

Query: 451 RKLLIKEGR-EDVLKFLQEKM 470
                K G     L   QE M
Sbjct: 589 IHGFRKVGNINGALDIFQEMM 609



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 189/397 (47%), Gaps = 17/397 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M  +R+  N  +F I+M+ +    K+  A+ TF
Sbjct: 77  SVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTF 136

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + K G    +  F+ LL  LC    + +A ++F  M     P+  T++ L+ G  ++ 
Sbjct: 137 GKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCK---PNVVTFTTLMNGLCREG 193

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIY 273
            +  A  +   M++ G  P+ +TYG +VD +CK G    AL +++ M+  +  +P   I+
Sbjct: 194 RVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIW 253

Query: 274 -----SVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRV 327
                + +++ +    R  +A     EM E+  I  DV  YNALI AF K  KF     +
Sbjct: 254 PLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEEL 313

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
             +M  +G+ P++ T + +++G   +   D A  +F  M  K C  D  T+  +I  +C+
Sbjct: 314 YDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCR 373

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
              ++   K+   M     + +  T++ LI+G C  G ++ +  LL++M+  G+ P+  T
Sbjct: 374 AKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVT 433

Query: 447 FGKLRKLLIKEGR-EDVLKFL----QEKMNLLVKEPL 478
              L   L   G+ +D L+      + KM++    P 
Sbjct: 434 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPF 470



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 12/242 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  ++  + +V  +  A      M   GV  N+   N LL  LC +  ++ A E+F
Sbjct: 395 NTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 454

Query: 190 DCMKDRFI------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
             M+   +            PD +TY+IL+ G   +     A E++ EM   G  PD +T
Sbjct: 455 KAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 514

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++  LCK  R+DEA  +  SM S    P    ++ L++ Y    R++D ++ F EM 
Sbjct: 515 YNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 574

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + GI+A+   Y  LI  F K         + ++M + GV P++ T   +L GL  + E  
Sbjct: 575 RRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELK 634

Query: 358 EA 359
            A
Sbjct: 635 RA 636



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I    ++       DL+  M +  +  NV T   ++       K+++A+  F  M
Sbjct: 398 TYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAM 457

Query: 158 QKY-----------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSI 205
           QK            GV  ++  +N L+S L       +A+E+++ M  R  +PD+ TY+ 
Sbjct: 458 QKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNS 517

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           ++ G  K   L  A ++F  M     +P++VT+  +++  CKAGRVD+ L +   M    
Sbjct: 518 VIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRG 577

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-VAMYNALIGAFCKANKFKNV 324
               +  Y  L+H +     I  A+D F EM  +G+  D + + N L G + K  + K  
Sbjct: 578 IVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSK-EELKRA 636

Query: 325 YRVLKDMN 332
             +L+D+ 
Sbjct: 637 VAMLEDLQ 644



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 47/304 (15%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD--- 262
           L  G+ +   L  A ++F +MV +   P ++ +  ++ V+ + GR+D  + + + M+   
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 263 -------------------------STVCR-------PTSFIYSVLVHTYGVENRIEDAV 290
                                    ST  +       PT   +S L+H   VE+RI +A+
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           D F +M K     +V  +  L+   C+  +      +L  M   G+ PN  T   I++G+
Sbjct: 169 DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 224

Query: 351 IGRGETDEAYRVFRRMIKLCEADADTY-------TMMIKMFCQGGELEKAFKVWKYM-KL 402
              G+T  A  + R+M ++     +         T MI  FC  G   +A ++ + M + 
Sbjct: 225 CKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLER 284

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           K+  P + T++ LIN    +G   ++  L ++M+ +GI PS  T+  +     K+ R D 
Sbjct: 285 KKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDA 344

Query: 463 LKFL 466
            + +
Sbjct: 345 AEHM 348



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 18/244 (7%)

Query: 32  LDAAKSISKIMLSS---PKVV-----LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           L+AA+ + + M+SS   P VV     LD   D   ++       D LE F+ A   +   
Sbjct: 412 LNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLK-------DALEMFK-AMQKSKMD 463

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
              +      E  V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++    
Sbjct: 464 IDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLC 523

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           +  +++EA   F+ M     + N+  F  L++  CK+  V    E+F  M  R  + ++ 
Sbjct: 524 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 583

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T   M+  L     +  A+ +++ +
Sbjct: 584 TYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDL 643

Query: 262 DSTV 265
             +V
Sbjct: 644 QMSV 647


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 197/426 (46%), Gaps = 7/426 (1%)

Query: 38  ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA-FCFFKWAEKQQNYEHS 96
           +S++   SP  +L   +  +       +V  V + + + G L   C       ++     
Sbjct: 150 VSRLGRDSPPRLLPLLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVP 209

Query: 97  VRAYHSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           + A+  ++  L  + + Y     L++A           F ++MR   R  K+  A   F+
Sbjct: 210 MPAWSDLMNRLPSVPEAYAFYLHLLDAGVPPE---ARQFNMLMRDMIRSGKLASARNVFD 266

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M + GV   +  FN L+S +CK+ ++  A  +   M K    PD  TY   ++G  K  
Sbjct: 267 EMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTG 326

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F EM + G NP+ V    ++D  CK G V   L +   M +   +     Y+
Sbjct: 327 RIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYN 386

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV+ +     ++ A D   EM K+G+  D   Y  LI   CK  +      + ++M+ +
Sbjct: 387 ALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDE 446

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           GVA +  T   +++GL   G + +A R+   M++   + D  TYTM+I  FC+ G+++  
Sbjct: 447 GVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTG 506

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           FK  K M+ K   P + T++V++NG C  G + ++ +LL  M+  G+ P+  T+  L   
Sbjct: 507 FKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDG 566

Query: 454 LIKEGR 459
             K G+
Sbjct: 567 HCKHGK 572



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 139/300 (46%), Gaps = 2/300 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V TF  +M    +   +  A     +M K G+  ++  +   +  LCK+  ++ A E+F+
Sbjct: 277 VVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFE 336

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M +R + P++   + L++   K+ ++    E+  EM   G   D+V Y  +V+  C+  
Sbjct: 337 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 396

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            +  A  IV+ M     +P    Y+ L+     E  ++ A++   EM   G+  D   Y 
Sbjct: 397 DMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYT 456

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
           ALI    KA +  +  R+L +M   G+ P++ T  ++++     G+    ++  + M  K
Sbjct: 457 ALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNK 516

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
                  TY +++  FC  G+++ A  +   M      P+  T+++L++G C  G V D+
Sbjct: 517 GKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDT 576



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 4/264 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+   ++   +  ++++A+  F  M + G+  N      L+ A CK  +V    E+ 
Sbjct: 311 DVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELR 370

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R +  D   Y+ L+ G+ +  ++  A +I  EM   G  PD VTY  ++D  CK 
Sbjct: 371 WEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKE 430

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +D A+ + + M           Y+ L+       R  DA     EM + G+  D   Y
Sbjct: 431 GELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTY 490

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-- 366
             +I AFCK    K  ++ LK+M +KG  P   T N+++NG    G+   A  +   M  
Sbjct: 491 TMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLN 550

Query: 367 IKLCEADADTYTMMIKMFCQGGEL 390
           I +C  D  TY +++   C+ G++
Sbjct: 551 IGVCPNDI-TYNILLDGHCKHGKV 573



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
            +W    +  +  + AY++++    ++R  +   D+V  MR   +  +  T+  ++    
Sbjct: 369 LRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCC 428

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSK 201
           +  +++ A+     M   GV  +   +  L+S L K+     A+ I  + M+    PD+ 
Sbjct: 429 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 488

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY+++++ + K+ ++    +  +EM + G NP IVTY ++++  C  G++  A  ++ +M
Sbjct: 489 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 548

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +    P    Y++L+  +    ++ D  +  L+  K G+++D  +Y +LI  F K    
Sbjct: 549 LNIGVCPNDITYNILLDGHCKHGKVRDTEE--LKSAK-GMVSDFGVYTSLINEFVKKKSA 605

Query: 322 KNVY 325
           K+ +
Sbjct: 606 KSYH 609



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 20/284 (7%)

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPD-------IVTYGIMV------DVLCKAGRV 251
           +L+     D   P    + +   D G  PD        +  GI V      D++ +   V
Sbjct: 164 LLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLPSV 223

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA      +      P +  +++L+       ++  A + F EM + G+   V  +N L
Sbjct: 224 PEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTL 283

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           +   CKA+   N   +   M   G+AP+  T    + GL   G   +A  +F  M   CE
Sbjct: 284 MSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM---CE 340

Query: 372 ----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                +    T +I   C+ G++    ++   M  +     +  ++ L+NG C    +  
Sbjct: 341 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 400

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +  ++E+M + G++P   T+  L     KEG  D    ++++M+
Sbjct: 401 ANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMS 444


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           Y    K +EA       +  G   ++ A+N +L+ L K + V +A  IF+ MK   +P+ 
Sbjct: 100 YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNV 159

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+IL++   ++  L  A EI  +M   G  P+++T  IM+D LCKA +++EA  I + 
Sbjct: 160 PTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 219

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           MD  VC P +  +S L+   G   R++DA   + +M   G +    +Y +LI +F K  +
Sbjct: 220 MDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGR 279

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTM 379
            ++ +++ K+M   G +P+    N  ++ +   GET++   +FR +       DA +Y++
Sbjct: 280 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 339

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I    + G   + ++++  MK +  +   H ++ +I+G C  G V+ +  LLE+M  KG
Sbjct: 340 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 399

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQE-------KMNLLVKEPLCD 480
             P+  T+G +   L K  R D    L E       K+N++V   L D
Sbjct: 400 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLID 447



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 168/354 (47%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + S+I+ L K  +    + L   M     +     +  ++R + +  + E+    +  M 
Sbjct: 232 FSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV 291

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G + +L   N  +  + K+    K + +F +     FIPD+++YSIL+ G  K     
Sbjct: 292 HTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLAN 351

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              E+F  M + GC  D   Y  ++D  CK+G+V++A  +++ M      PT   Y  ++
Sbjct: 352 ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 411

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E + NGI  +V +Y++LI  F K  +    Y +++++  KG+ 
Sbjct: 412 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 471

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M  L C  +  TY+++I   C+  +  KAF  
Sbjct: 472 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 531

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           W+ M+     P+  T++ +I+GL   G + ++  L       G  P   ++  +
Sbjct: 532 WQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAM 585



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 192/403 (47%), Gaps = 43/403 (10%)

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
           +K +    SV AY+ ++  L K R+ +    +   M+   + NV T+ I++    R  K+
Sbjct: 116 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKL 175

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSIL 206
             A+   + M++ G+  N+   N ++  LCK++ + +A  IF+ M D+   P++ T+S L
Sbjct: 176 NAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSL 235

Query: 207 LEGWGK----------------DPNLPRA-------------------REIFREMVDTGC 231
           ++G GK                  ++P A                    +I++EMV TGC
Sbjct: 236 IDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGC 295

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +PD+      +D + KAG  ++   + + +++    P +  YS+L+H         +  +
Sbjct: 296 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 355

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F  M++ G + D   YNA+I  FCK+ K    Y++L++M  KG  P   T   +++GL 
Sbjct: 356 LFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLA 415

Query: 352 GRGETDEAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
                DEAY +F       IKL   +   Y+ +I  F + G +++A+ + + +  K   P
Sbjct: 416 KIDRLDEAYMLFEEAKSNGIKL---NVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 472

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +++T++ L++ L     ++++ +  + M +    P+  T+  L
Sbjct: 473 NVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSIL 515



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 165/384 (42%), Gaps = 52/384 (13%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS----------ALCKSKNVRKAQEIFDCM 192
           + +K+ EA      M+K+      +A+  L+            LCK+  + +A E+F+ +
Sbjct: 22  KSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQL 81

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++R +P +  Y+ ++ G+G       A  +       G  P ++ Y  ++  L K  RV
Sbjct: 82  EQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRV 141

Query: 252 DEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +EAL I + M  D+    PT   Y++L+     E ++  A++   +ME+ G+  +V   N
Sbjct: 142 EEALRIFEEMKRDAVPNVPT---YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVN 198

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            +I   CKA K +    + + M+ K   PN+ T + +++GL   G  D+AY ++ +M+  
Sbjct: 199 IMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDC 258

Query: 370 CEA-DADTYTMMIKMFCQGGELEKAFKVWKYM---------------------------- 400
                A  YT +I+ F + G  E   K++K M                            
Sbjct: 259 GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKG 318

Query: 401 -------KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
                      FIP   ++S+LI+GL   G+ +++  L   M E+G       +  +   
Sbjct: 319 RALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDG 378

Query: 454 LIKEGREDVLKFLQEKMNLLVKEP 477
             K G+ +    L E+M +    P
Sbjct: 379 FCKSGKVNKAYQLLEEMKVKGHPP 402



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 127/267 (47%), Gaps = 2/267 (0%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARV 144
           +A K+Q       AY+++I+   K  +    + L+  M+ K     V T+  ++   A++
Sbjct: 358 YAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKI 417

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTY 203
            +++EA   F   +  G+  N+  ++ L+    K   + +A  I  + M+    P+  T+
Sbjct: 418 DRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 477

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + LL+   K   +  A   F+ M D  C P+ +TY I+++ LC+  + ++A    + M  
Sbjct: 478 NCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQK 537

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              +P +  Y+ ++        I +A   F   + NG + D A YNA+I     ANK  +
Sbjct: 538 LGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMD 597

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGL 350
            Y + ++   KG   +++TC ++L+ L
Sbjct: 598 AYALFEETRLKGCNIHTKTCVVLLDAL 624



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 142/334 (42%), Gaps = 14/334 (4%)

Query: 82  CFFKWAEKQQN-----------YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-ML 129
           C FK  E ++            +    R+Y  +I  L K       ++L  AM+ +  +L
Sbjct: 308 CVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVL 367

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   +  ++  + +  KV +A      M+  G    +  +  ++  L K   + +A  +F
Sbjct: 368 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLF 427

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K   I  +   YS L++G+GK   +  A  I  E++  G  P++ T+  ++D L KA
Sbjct: 428 EEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 487

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             ++EAL   +SM    C P    YS+L++      +   A   + EM+K G+  +   Y
Sbjct: 488 EEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITY 547

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
             +I    KA        +     + G  P+S + N ++ GL    +  +AY +F    +
Sbjct: 548 TTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRL 607

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           K C     T  +++    +   LE+A  V   +K
Sbjct: 608 KGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLK 641



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 13/285 (4%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD----------VL 245
           F P S     L+    K   L  A +I + M      P    Y I++           VL
Sbjct: 6   FGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVL 65

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CKA R+DEA+ + + ++     P ++ Y+ ++  YG   + ++A       +  G +  V
Sbjct: 66  CKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSV 125

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN ++    K  + +   R+ ++M    V PN  T NI+++ L   G+ + A  +   
Sbjct: 126 IAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDD 184

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M +     +  T  +MI   C+  +LE+A  +++ M  K   P+  TFS LI+GL   G 
Sbjct: 185 MERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGR 244

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           V D+  L E M++ G  P    +  L +   K GR ED  K  +E
Sbjct: 245 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKE 289


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 192/417 (46%), Gaps = 49/417 (11%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           A +S++  LA+   +  M +L+  M       NV TF I++    + ++V++A+     M
Sbjct: 307 ACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKM 366

Query: 158 Q--------KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILL 207
                       V  ++  +N L+  LCK    ++   + + M+ +    PD+ TY+ L+
Sbjct: 367 SGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLI 426

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV---------------- 251
           +G+ K   + + +E+F EM   G  P++VT   +V  +C+ GRV                
Sbjct: 427 DGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486

Query: 252 -------------------DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
                              ++A+ +   M  + C P + +Y  L+  +    R+ DA   
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFV 546

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             E++K GI  D   YN LIG FC+ NKF  V+ +LK+M   G+ P++ T N ++     
Sbjct: 547 LAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606

Query: 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK-LKRFIPSMH 410
            G+   A +V R+MIK        TY  +I  +C  G   +A +++K MK   +  P+  
Sbjct: 607 NGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTV 666

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
            +++LIN LC    V  +  L+EDM   G+ P+  T+  + K L  E   E V +F+
Sbjct: 667 IYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFM 723



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 175/376 (46%), Gaps = 5/376 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAV 151
           E  V  Y+++I+ L K+ + Q    L+  MR+++    +  T+  ++  + +  ++E+  
Sbjct: 380 EPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGK 439

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW 210
             F+ M K GV  N+   N L+  +C++  V  A   F +  +     D+ TY+ L+  +
Sbjct: 440 ELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAF 499

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
               N  +A E+F EM+ +GC+PD + Y  ++    +AGR+ +A  ++  +     RP +
Sbjct: 500 CNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDT 559

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+  +   N+     +   EME+ G+  D   YN LI    K    K   +V++ 
Sbjct: 560 VCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRK 619

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMMIKMFCQGG 388
           M   GV P   T   ++N     G  +EA  +F+ M    +   +T  Y ++I   C+  
Sbjct: 620 MIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNN 679

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++ A  + + MK+    P+  T++ +  GL D+  +      ++ MIE    P   T  
Sbjct: 680 KVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITME 739

Query: 449 KLRKLLIKEGREDVLK 464
            L + L   G  + LK
Sbjct: 740 ILTEWLSAVGEIERLK 755



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 140/285 (49%), Gaps = 17/285 (5%)

Query: 172 LLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L++ LC+++   +  ++F + +K   + +S   + LL G  ++ N  R  E+  +MV+  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD--------STVCRPTSFIYSVLVHTYGV 282
             P++VT+GI+++ +CK  RVD+AL +++ M         S    P   IY+ L+     
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 283 ENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             R ++ +     M  + G   D   YN LI  FCKA + +    +  +MN +GVAPN  
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 342 TCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           T N ++ G+   G    A   F    RR +K    DA TYT +I  FC     EKA +++
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK---GDAVTYTALINAFCNVNNFEKAMELF 512

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             M      P    +  LI+G    G ++D+  +L ++ + GIRP
Sbjct: 513 NEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRP 557



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 152/350 (43%), Gaps = 14/350 (4%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++ +  R +K       F  M K G     AA N LL+ L +  N  +  E+ + M +  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMD 335

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREM--------VDTGCNPDIVTYGIMVDVLCK 247
           I P+  T+ IL+    K   +  A E+  +M        +     PD+V Y  ++D LCK
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 248 AGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            GR  E LG+++ M S   C P +  Y+ L+  +     IE   + F EM K G+  +V 
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             N L+G  C+  +  +      +   +G+  ++ T   ++N        ++A  +F  M
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM 515

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +K  C  DA  Y  +I  F Q G +  A  V   +K     P    ++ LI G C     
Sbjct: 516 LKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKF 575

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
                +L++M E G++P   T+  L     K G    LKF Q+ M  ++K
Sbjct: 576 HRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGD---LKFAQKVMRKMIK 622



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 139/321 (43%), Gaps = 29/321 (9%)

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           A C+  +      ++   K+  IP +    S LL   G+   +  +  +F ++     +P
Sbjct: 131 AFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDL-----DP 185

Query: 234 DIV-TY--GIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTS----FIYSVLVHTYGV 282
            +  TY   + + +L ++GRV +AL ++  M    D + CRP       ++S L+     
Sbjct: 186 SVKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERN 245

Query: 283 ENRI--EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
           E  +  ++ V+  L+  ++G+L        LI   C+  K    + +  +M   G    S
Sbjct: 246 EELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLES 305

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
             CN +L GL   G  +    +  +M+++  + +  T+ ++I   C+   ++ A +V + 
Sbjct: 306 AACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEK 365

Query: 400 MKLKR--------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPSGETFGKL 450
           M   +          P +  ++ LI+GLC  G   +   L+E M  +KG  P   T+  L
Sbjct: 366 MSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCL 425

Query: 451 RKLLIKEGREDVLKFLQEKMN 471
                K G  +  K L ++MN
Sbjct: 426 IDGFCKAGEIEKGKELFDEMN 446


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 191/418 (45%), Gaps = 8/418 (1%)

Query: 49  VLDTALDQSGIRVSPEIV--EDVLEK-FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
           +L T + +SG   SP +V    V+   FR       C       QQ     V  Y S+I+
Sbjct: 212 LLHTMVKKSG-GCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIID 270

Query: 106 SLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           +L K R       ++  M +     N  T+  ++  Y+   + +E    F  M   G+  
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMP 330

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF 223
           N+   N  +S+LCK    ++A E FD M  +   P+  TYS+LL G+  +        +F
Sbjct: 331 NIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLF 390

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             M   G   D   + I++D   K G +DE + I   M      P +  Y +++  +   
Sbjct: 391 NSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRM 450

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRT 342
            R+ DA+D F +M   G+  +  +Y++LI  FC          ++ +M S+G+  PN   
Sbjct: 451 GRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVF 510

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N I+N L   G   EA+ +F  +I + E  D  T+  +I  +   G++EKAF V   M 
Sbjct: 511 FNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMI 570

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
                P + +++ LI+G C  G + D  +L  +M+ KG++P+  T+G +   L  +GR
Sbjct: 571 SAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGR 628



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 183/387 (47%), Gaps = 10/387 (2%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEH----SVRAYHSMIESLAKIRQYQIMWDLVNA-MRTKRM 128
           R+  +LA   F    +++        +V  Y+ +++   + R+  + + L    ++T   
Sbjct: 92  RDGPSLAVALFNRICREEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLK 151

Query: 129 LNVETFCIIMRKYARVQKVEEAV-YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           ++V    I+++     ++ ++ V    + M + GV  +  ++N ++  LC+    ++A +
Sbjct: 152 MDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALD 211

Query: 188 IFDCMKDRF---IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244
           +   M  +     P+  TY+ ++ G  ++  + +A  +F EM+  G  PD+VTY  ++D 
Sbjct: 212 LLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDA 271

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           LCKA  +D+A  +++ M S   +P    Y+ ++H Y +  + ++    F EM   G++ +
Sbjct: 272 LCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPN 331

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           +   N+ + + CK  K K        M +KG  PN  T +++L+G    G   +   +F 
Sbjct: 332 IVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFN 391

Query: 365 RM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            M      AD   + ++I  + + G +++   ++  M+ +  IP   T+ ++I      G
Sbjct: 392 SMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMG 451

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKL 450
            ++D+      MI  G++P G  +  L
Sbjct: 452 RLADAMDKFNQMIAMGLKPEGIVYHSL 478



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 167/355 (47%), Gaps = 17/355 (4%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ FC+    +  + K +E V   + M   G+ + N+  FN ++++LCK   V +A +IF
Sbjct: 479 IQGFCM----HGNLVKAKELV---SEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIF 531

Query: 190 DC---MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           D    + +R  PD  T++ L++G+G    + +A  +   M+  G  PD+V+Y  ++D  C
Sbjct: 532 DFVIHIGER--PDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYC 589

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + GR+D+ L +   M S   +PT+  Y +++H    + R   A     EM ++G   D++
Sbjct: 590 RNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIS 649

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
               ++G  C+ N       + K + +  V  N    N +++ +    + +EA  +F  +
Sbjct: 650 TCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSI 709

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                  +A TY +MIK   + G +E+A  ++  M+     PS    + +I  L +KG +
Sbjct: 710 SATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEI 769

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR--EDVLKFLQEKMNLLVKEPL 478
             +   +  +  K I     T   L  L  +EG+  EDV K L  K      + L
Sbjct: 770 VKAGNYMFKVDGKRISLEASTVSLLMALFSREGKYWEDV-KLLPAKYQFFGGDTL 823



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 4/231 (1%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P + TY I++D  C+  R      +      T  +    + S+L+       R +D V+ 
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 293 FLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM--NSKGVAPNSRTCNIILNG 349
            L  M + G+  D   YN ++   C+ ++ +    +L  M   S G +PN  T N +++G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   GE  +A  +F  M++     D  TYT +I   C+   ++KA  V + M    F P+
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             T++ +I+G    G   ++  +  +M  +G+ P+  T       L K G+
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGK 347



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +++ T  II+    R    +EA+  F  +    V  N+A  N ++ A+ K +   +A+E+
Sbjct: 646 MDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKEL 705

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           FD +     +P++ TY ++++   K+ ++  A  +F  M  +GC P       ++ VL +
Sbjct: 706 FDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLE 765

Query: 248 AGRVDEA 254
            G + +A
Sbjct: 766 KGEIVKA 772


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 198/408 (48%), Gaps = 8/408 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  + D++    NA  +  A   F +  K +  + +  AY+SMI  L    +Y+ + +
Sbjct: 153 VTPMELSDIIRMLGNAKMISKAVAIF-YQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHE 211

Query: 119 LVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M  +     +  T+  ++  + ++ + + A++  N M+  G+      +  L++ L
Sbjct: 212 LYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALL 271

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  NV  A  +F+ M+ ++  PD  TY+ L+ G GK   L  A   F EM   GC PD 
Sbjct: 272 FKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDT 331

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           V    M++ L KAGR+D+A+ + + M++  C P+   Y+ ++   +  ++R+ +    F 
Sbjct: 332 VLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFE 391

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            M+ +GI      Y+ LI  FCK N+ +    +L++M+ KG  P       +++ L    
Sbjct: 392 RMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 451

Query: 355 ETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             D A  +F+ + + C  + A  Y +MIK   + G L+ A  ++  M      P+++ ++
Sbjct: 452 RYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYN 511

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            L++GL   G++ ++   +  M + G  P   ++  +   L K G  D
Sbjct: 512 ALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPD 559



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 178/401 (44%), Gaps = 6/401 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRK 140
           FF+WA +++NYEH    Y ++I  L  + QY  MW ++  M    +  V    +  I+R 
Sbjct: 105 FFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRM 164

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIP 198
               + + +AV  F  ++         A+N ++  L       K  E+++ M +  +  P
Sbjct: 165 LGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFP 224

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D+ TYS L+  + K      A  +  EM D G  P    Y +++ +L K   V  ALG+ 
Sbjct: 225 DTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLF 284

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + M    CRP  F Y+ L+   G   R+++A + F EM + G   D  + N +I    KA
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKA 344

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-GRGETDEAYRVFRRMIKLCEADAD-T 376
            +  +  ++ ++M +    P+  T N I+  L   +    E    F RM     + +  T
Sbjct: 345 GRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFT 404

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+++I  FC+    EKA  + + M  K F P    +  LI+ L        +  L +++ 
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELK 464

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           E     S   +  + K L K GR D    L ++MN L   P
Sbjct: 465 ENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTP 505



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 152/341 (44%), Gaps = 16/341 (4%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR-------TKRMLNVETFCIIMRKY 141
           + Q     V  Y  +I  L K  +    ++  + MR       T  M N+  F       
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFL------ 341

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFI-PD 199
            +  ++++A+  F  M+      ++  +N ++ AL +SK+ V +    F+ MK   I P 
Sbjct: 342 GKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPS 401

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TYSIL++G+ K     +A  +  EM + G  P    Y  ++D L KA R D A  + +
Sbjct: 402 PFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQ 461

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            +       ++ +Y+V++   G   R++DAVD F EM + G   +V  YNAL+    +A 
Sbjct: 462 ELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAG 521

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYT 378
                   ++ M   G  P+  + NIILN L   G  D A  +   M +   + DA +Y 
Sbjct: 522 MLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYN 581

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            ++      G  E+A K+ K M    F   + T+S ++  +
Sbjct: 582 TVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAI 622



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 35/223 (15%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY S+I++L K ++Y +  +L   ++      +   + ++++   +  ++++AV  F+ M
Sbjct: 439 AYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEM 498

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            + G T N+ A+N                                   L+ G  +   L 
Sbjct: 499 NRLGCTPNVYAYNA----------------------------------LMSGLARAGMLD 524

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A    R M D GC PDI +Y I+++ L K G  D A+G++ +M  +  +P +  Y+ ++
Sbjct: 525 EALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVL 584

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
                    E+A     EM   G   D+  Y++++ A  K ++
Sbjct: 585 GALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGKVDQ 627


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 4/377 (1%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFC 135
           G  AF  F   + +    H V A + M+    K  + +  W L   M R +   +V TF 
Sbjct: 137 GDDAFECFDMMKGKGVIPH-VHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFN 195

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I++    +  K+++A     +M+  G+  N+  +N ++   C    V  A+ IFD MK R
Sbjct: 196 IMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCR 255

Query: 196 FI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            + PDS TY   + G  K+  L  A  +  +M + G  P  VTY  ++D  C  G ++ A
Sbjct: 256 GVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMA 315

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
                 M      PT   Y++L+H   ++ ++++A     EM + G++ D   YN LI  
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
           +C+    K  + +  +M SKG+ P   T   ++  L  RG   +A  +F +++ K    D
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              +  +I   C  G +++AF + K M   + +P   TF+ L+ G C +G V  +  L+E
Sbjct: 436 LIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIE 495

Query: 434 DMIEKGIRPSGETFGKL 450
           +M  +GI+P   ++  L
Sbjct: 496 EMKSRGIKPDHISYNTL 512



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 192/374 (51%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  +I +  ++++    ++  + M+ K ++ +V     ++  + +  + E+A   +  M 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           +  +  ++  FN +++ LCK   ++KA+E    M+   I P+  TY+ ++ G+     + 
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            AR IF  M   G  PD  TYG  +  +CK G+++EA G+++ M     RPT+  Y+ L+
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  +  +E A D   +M + G++  V+ YN LI A     K      ++K+M+ KG+ 
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+S T NI++NG    G   +A+ +   MI K  +    TYT +I +  + G +++A  +
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDL 423

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ +  K   P +  F+ LI+G C  G +  +  +L++M +  + P   TF  L +   +
Sbjct: 424 FEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCR 483

Query: 457 EGREDVLKFLQEKM 470
           EG+ +  + L E+M
Sbjct: 484 EGKVEAARELIEEM 497



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 174/357 (48%), Gaps = 7/357 (1%)

Query: 96  SVRAYHSMIE---SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           +V  Y+++I    S  ++   ++++DL+     K   +  T+   +    +  K+EEA  
Sbjct: 225 NVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKP--DSYTYGSFISGMCKEGKLEEASG 282

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
               M++ G+      +N L+   C   N+  A +  D M ++  +P   TY++L+    
Sbjct: 283 MLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALF 342

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            D  +  A  I +EM + G  PD VTY I+++  C+ G V +A  +   M S   +PT  
Sbjct: 343 LDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRV 402

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L++      R++ A D F ++ + GI  D+ M+NALI   C        + +LK+M
Sbjct: 403 TYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM 462

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGEL 390
           +   V P+  T N ++ G    G+ + A  +   M  +  + D  +Y  +I  + + G++
Sbjct: 463 DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDM 522

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           + AF+V   M    F P++ T++ LI GLC       +  LL++MI KGI P+  T+
Sbjct: 523 KDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTY 579



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 3/287 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I+        ++ +D  + M R   M  V T+ +++       K++EA      M
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM 357

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            + G+  +   +N L++  C+  NV+KA  + D M  + I P   TY+ L+    K   +
Sbjct: 358 SEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRM 417

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A ++F ++V  G  PD++ +  ++D  C  G +D A  ++K MD     P    ++ L
Sbjct: 418 KQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTL 477

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     E ++E A +   EM+  GI  D   YN LI  + K    K+ +RV  +M S G 
Sbjct: 478 MQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGF 537

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            P   T N ++ GL    E D A ++ + MI K    + +TY  +I+
Sbjct: 538 NPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIE 584



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 141/300 (47%), Gaps = 3/300 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           + + G+R +      +++ + N G L   F ++    ++    +V  Y+ +I +L    +
Sbjct: 287 MKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCK 346

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                 ++  M  K ++ +  T+ I++  Y R   V++A    + M   G+      +  
Sbjct: 347 MDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTS 406

Query: 172 LLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+  L K   +++A ++F+  ++    PD   ++ L++G   + N+ RA  + +EM    
Sbjct: 407 LIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK 466

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PD VT+  ++   C+ G+V+ A  +++ M S   +P    Y+ L+  Y     ++DA 
Sbjct: 467 VVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAF 526

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               EM   G    +  YNALI   CK  +  +  ++LK+M SKG+ PN  T   ++ G+
Sbjct: 527 RVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 8/258 (3%)

Query: 220 REIFREM-VDTGC--NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
           RE+F E+ V  G       V Y +++   C+  R D+A      M      P     + +
Sbjct: 103 REVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDM 162

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   NR E A   + EM +  I + V  +N +I   CK  K K     +  M + G+
Sbjct: 163 LSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGI 222

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N I++G   RG  + A  +F  M  +  + D+ TY   I   C+ G+LE+A  
Sbjct: 223 KPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASG 282

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK     P+  T++ LI+G C+KG +  +    + M+ +G+ P+  T+  L   L 
Sbjct: 283 MLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALF 342

Query: 456 KEGRED----VLKFLQEK 469
            + + D    ++K + EK
Sbjct: 343 LDCKMDEADGIIKEMSEK 360



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 91/172 (52%), Gaps = 1/172 (0%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +Y+ LI A C+  +  + +     M  KGV P+   CN +L+  +    T++A+ ++  M
Sbjct: 123 LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEM 182

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            ++  ++   T+ +MI + C+ G+L+KA +    M+     P++ T++ +I+G C +G V
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             + ++ + M  +G++P   T+G     + KEG+ +    + EKM  +   P
Sbjct: 243 EGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRP 294



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 2/185 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I  L+K  + +   DL   +  K +  ++  F  ++  +     ++ A      M
Sbjct: 403 TYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM 462

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            +  V  +   FN L+   C+   V  A+E+ + MK R I PD  +Y+ L+ G+ K  ++
Sbjct: 463 DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDM 522

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  EM+  G NP ++TY  ++  LCK    D A  ++K M S    P    Y  L
Sbjct: 523 KDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSL 582

Query: 277 VHTYG 281
           +   G
Sbjct: 583 IEGIG 587


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 191/394 (48%), Gaps = 4/394 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A+  F+  +K     + V  Y ++I+SLAK R+      L+  M ++ + +++  +  +M
Sbjct: 311 AYALFREMDKIGVAPNHV-TYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALM 369

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
            +  +  K+EEA       Q   +T N   +  L+ A C++ N+  A+++   M+++  I
Sbjct: 370 DRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVI 429

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T+S ++ G  K   L +A +  R+M D+G  P++VTYG ++D   K    + AL +
Sbjct: 430 PNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDV 489

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + M        +F+   LV+       IE A   F +M++ G+L D   Y  L+    K
Sbjct: 490 YRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFK 549

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
                  ++V +++  K ++P++   N+ +N L   G+  EA    + M     E D  T
Sbjct: 550 TGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQAT 609

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  MI   C+ G+  KA K+ K MK     P++ T++ L+ GL + G+V  +  LL +M 
Sbjct: 610 YNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMA 669

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             G  P+  T  ++ +      R DV+  + E M
Sbjct: 670 SAGFAPTSLTHQRVLQACSGSRRPDVILEIHELM 703



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 172/378 (45%), Gaps = 4/378 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++++I+   K++       +V  M T+ + L+V  +  ++  +      + A+    
Sbjct: 187 VVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVE 246

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M+  GV  N+  +  L+   CK K + +A  +++ M +   +PD  T S L++G  +D 
Sbjct: 247 RMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDG 306

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A  +FREM   G  P+ VTY  ++D L KA R  E+LG++  M S        +Y+
Sbjct: 307 QFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYT 366

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+   G E +IE+A D     + + I  +   Y  L+ A C+A       +VL  M  K
Sbjct: 367 ALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEK 426

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKA 393
            V PN  T + I+NGL+ RG   +A    R+M     A +  TY  +I  F +    E A
Sbjct: 427 SVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAA 486

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             V++ M  +    +      L+NGL   G +  +  L +DM E+G+      +  L   
Sbjct: 487 LDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDG 546

Query: 454 LIKEGR-EDVLKFLQEKM 470
           L K G      K  QE M
Sbjct: 547 LFKTGNMPAAFKVGQELM 564



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 2/332 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++  + + Q  E A+  +  M   GV  N    + L++ L K+ N+  A+ +F
Sbjct: 466 NVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALF 525

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +R  + D   Y+ L++G  K  N+P A ++ +E+++   +PD V Y + ++ LC  
Sbjct: 526 KDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTL 585

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+  EA   +K M +T   P    Y+ ++     E +   A+    EM++N I  ++  Y
Sbjct: 586 GKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITY 645

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             L+    +A   K    +L +M S G AP S T   +L    G    D    +   M+ 
Sbjct: 646 TTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMG 705

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
               AD   Y  ++ + C  G    A  V   M  +   P   TF+ LI G C    + +
Sbjct: 706 AGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDN 765

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +  +   M+ +G+ P+  TF  L   L   GR
Sbjct: 766 AFAIYAQMLHQGLSPNIATFNTLLGGLESAGR 797



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 170/380 (44%), Gaps = 5/380 (1%)

Query: 84  FKWAEK--QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRK 140
           FK  ++  ++N       Y+  I  L  + ++      +  MR   +  +  T+  ++  
Sbjct: 557 FKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAA 616

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPD 199
             R  K  +A+     M++  +  NL  +  L+  L ++  V+KA+ + + M    F P 
Sbjct: 617 RCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPT 676

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           S T+  +L+            EI   M+  G + DI  Y  +V VLC  G    A  ++ 
Sbjct: 677 SLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLD 736

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M +    P +  ++ L+  +   + +++A   + +M   G+  ++A +N L+G    A 
Sbjct: 737 EMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAG 796

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
           +      VL DM   G+ PN+ T +I++ G   +    EA R++  M+ K     A TY 
Sbjct: 797 RIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYN 856

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++  F + G + +A +++  MK +  + +  T+ +L+NG        +  +LL+DM E 
Sbjct: 857 SLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKEL 916

Query: 439 GIRPSGETFGKLRKLLIKEG 458
           G +PS  T   + +   + G
Sbjct: 917 GFKPSKGTISSMSRAFSRPG 936



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 40/307 (13%)

Query: 169 FNGLLSALCKSKNVRKAQEIF-----DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
            N ++ + C  +++R A  +         + +   D+ +Y+I L    +  +   A  + 
Sbjct: 79  LNSIILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSEQGHGRLAPPVL 138

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            EM   G + D VT    +  LC+ G V EA  + +               +LV   G++
Sbjct: 139 SEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAE---------------MLVRGRGID 183

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
                               DV  +NALI  +CK         V++ M ++GVA +    
Sbjct: 184 G------------------LDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGY 225

Query: 344 NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N ++ G    G+ D A  V  RM     E +  TYT +I  +C+G  +++AF +++ M  
Sbjct: 226 NSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVR 285

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-ED 461
              +P + T S L++GLC  G  S++  L  +M + G+ P+  T+  L   L K  R  +
Sbjct: 286 SGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSE 345

Query: 462 VLKFLQE 468
            L  L E
Sbjct: 346 SLGLLGE 352



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 36/250 (14%)

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
           +M   G+  ++  +N L+  LC     R A  + D M  R I PD+ T++ L+ G  K  
Sbjct: 702 LMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSS 761

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +L  A  I+ +M+  G +P+I T+  ++  L  AGR+ EA  ++  M      P +  Y 
Sbjct: 762 HLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYD 821

Query: 275 VLVHTYGVE-NRIE----------------------------------DAVDTFLEMEKN 299
           +LV  Y  + N++E                                   A + F EM++ 
Sbjct: 822 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRR 881

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+L   + Y+ L+  + K      V  +LKDM   G  P+  T + +       G T EA
Sbjct: 882 GVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEA 941

Query: 360 YRVFRRMIKL 369
            R+ + + K+
Sbjct: 942 RRLLKTLFKV 951


>gi|259490380|ref|NP_001159198.1| uncharacterized protein LOC100304284 [Zea mays]
 gi|223942589|gb|ACN25378.1| unknown [Zea mays]
 gi|414865313|tpg|DAA43870.1| TPA: hypothetical protein ZEAMMB73_208601 [Zea mays]
          Length = 519

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 204/439 (46%), Gaps = 10/439 (2%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNA---GTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
            +++AL  S + +S  +++ V+ +FR A      A      A  +     S  A  + + 
Sbjct: 58  AMESALAASAVSLSSPLLDAVMRRFRFAHGDPLRALSLLSLAADRGGIAPSPYAIDTALY 117

Query: 106 SLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
            L + R++  MW+LV   R      L   T  I++ + A+V  V E V +F  + +   T
Sbjct: 118 VLGRARRFPHMWNLVANTRRICPDALTPRTAMIVLGRVAKVCSVRETVASFRCLARLFHT 177

Query: 164 QNLAA-FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
            + A  FN LL  LC+ K++  A+ +F  +K  F  +  T++ILL GW    +   A   
Sbjct: 178 VDPAVLFNALLRTLCQEKSMSDARNVFHALKYEFRVNRHTFNILLSGWKSAED---AEAF 234

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
             EM + G  PD+VTY  ++D  CK   V +A  ++  M      P    Y+ L+   G+
Sbjct: 235 VTEMRELGVEPDLVTYNSLIDCHCKNRDVQKAYKLLDEMRHKDISPDIITYTSLIGGLGL 294

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             + + A D   EM + G   DV  YNA I  F  A +  + + ++  M SKG+ PN  T
Sbjct: 295 IGQPDKAKDLLKEMYELGCYPDVPAYNAAIRNFVIAKRLGDAFALMDQMVSKGLMPNPTT 354

Query: 343 CNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N+         +   A+R++ RM  + C  +  +   +I++  + G++  A ++W  M 
Sbjct: 355 YNLFFRCYYWAFDIGSAWRLYERMRSEGCYPNTQSCMFIIRLCHRYGKVALALELWSDMV 414

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              F        VL++ LCD+G + D+      M+E G +PS   F +++ L+    +E+
Sbjct: 415 SSSFGSLTLVSDVLLDLLCDEGKLEDAERCFCQMVELGQKPSNVAFRRIKILMQLAKQEE 474

Query: 462 VLKFLQEKMNLLVKEPLCD 480
            +  L EKM    + P  D
Sbjct: 475 SIARLTEKMIQFGRLPPVD 493


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 202/435 (46%), Gaps = 37/435 (8%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P I  +V++K  N   + F F++++  + N  HS   Y+ +  SL K   + +   + 
Sbjct: 67  LNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMF 126

Query: 121 NAMRT------KRMLN------------------------VETFCII----MRKYARVQK 146
             M++       R+L                         VE  C++    +    ++ +
Sbjct: 127 ECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDR 186

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSI 205
           VE+A+  F    ++    +   FN L+  LC      KA E+   M     +PD  TY+ 
Sbjct: 187 VEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNT 246

Query: 206 LLEGWGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           L++G+ K   L +A E+F ++   +GC+PD+VTY  M+   CKAG++ EA  ++  M   
Sbjct: 247 LIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRL 306

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              PT+  ++VLV  Y     +  A +   +M   G   DV  + +LI  +C+  +    
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQG 366

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKM 383
           +R+ ++MN++G+ PN+ T +I++N L       +A  +  ++  K        Y  +I  
Sbjct: 367 FRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDG 426

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC+ G++ +A  + + M+ K+  P   TF++LI G C KG + ++  +   M+  G  P 
Sbjct: 427 FCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPD 486

Query: 444 GETFGKLRKLLIKEG 458
             T   L   L+K G
Sbjct: 487 KITVSSLLSCLLKAG 501



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 171/382 (44%), Gaps = 40/382 (10%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           +   GI  +  ++  ++  F   G L  C      +    E      +S++ +L K+ + 
Sbjct: 129 MKSDGISPNSRLLGFLVSSFAEKGKL-HCATALLLQSYEVEGCCMVVNSLLNTLVKLDRV 187

Query: 114 QIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
           +    L    +R +   + +TF I++R    V K E+AV     M  +G   ++  +N L
Sbjct: 188 EDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTL 247

Query: 173 LSALCKSKNVRKAQEIFD-------CMKD------------------------------R 195
           +   CKS  ++KA E+FD       C  D                               
Sbjct: 248 IKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLG 307

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P + T+++L++G+ K   +  A EI  +M+  GC PD+VT+  ++D  C+ G+V++  
Sbjct: 308 IYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGF 367

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + + M++    P +F YS+L++    ENR+  A +   ++    I+    MYN +I  F
Sbjct: 368 RLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGF 427

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           CKA K      ++++M  K   P+  T  I++ G   +G   EA  +F +M+ + C  D 
Sbjct: 428 CKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 487

Query: 375 DTYTMMIKMFCQGGELEKAFKV 396
            T + ++    + G  ++A+ +
Sbjct: 488 ITVSSLLSCLLKAGMAKEAYHL 509



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 6/257 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y SMI    K  + Q    L++ M R        TF +++  YA+  ++  A     
Sbjct: 277 VVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRG 336

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M  +G   ++  F  L+   C+   V +   +++ M  R   P++ TYSIL+    K+ 
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKEN 396

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L +ARE+  ++      P    Y  ++D  CKAG+V+EA+ IV+ M+   C+P    ++
Sbjct: 397 RLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFT 456

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV----LKD 330
           +L+  + ++ R+ +AV  F +M   G   D    ++L+    KA   K  Y +     K 
Sbjct: 457 ILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKG 516

Query: 331 MNSKGVAPNSRTCNIIL 347
             + G    ++T N+ L
Sbjct: 517 QINDGAPLETKTANVTL 533


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 181/365 (49%), Gaps = 3/365 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++S+I+   K  +   +  LV  MR      +V T+  ++  + +  ++E A   F 
Sbjct: 223 VVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFA 282

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M++ GV  N+  F+  + A CK   VR+A ++F  M+ R +  +  TY+ L++G  K  
Sbjct: 283 AMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAG 342

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  EMV  G   ++VTY ++VD LCK  +V EA  +++ M+    R    +Y+
Sbjct: 343 RLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYT 402

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H + +    E A+    EM+  G+  D+++Y ALI   C  +K      +L  M+  
Sbjct: 403 TLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES 462

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKA 393
           G+ PN      +++     G+  EA  + ++++    + +  TY  +I   C+ G +++A
Sbjct: 463 GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEA 522

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
              +  M+     P++  ++ L++GLC  G ++++  L  +M+ KG+      +  L   
Sbjct: 523 ISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 582

Query: 454 LIKEG 458
            +K+G
Sbjct: 583 YLKQG 587



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/446 (22%), Positives = 194/446 (43%), Gaps = 23/446 (5%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAG---------TLAFCFFKWAEKQQNYEH--- 95
           V  ++ +D  G     + VE ++E+ R +G          L  CF K+   +  Y +   
Sbjct: 224 VTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAA 283

Query: 96  --------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQK 146
                   +V  + + +++  K    +    L   MR + M LN  T+  ++    +  +
Sbjct: 284 MKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           +++A+   + M + GV  N+  +  L+  LCK + V +A+++   M+   +  +   Y+ 
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+ G   + N  +A  +  EM + G   DI  YG ++  LC   ++DEA  ++  MD + 
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P   IY+ ++       ++ +A+    ++  +G   +V  Y ALI   CKA       
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
                M   G+ PN +    +++GL   G  +EA ++F  M+ K    D   YT ++  +
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
            + G L  AF +   M        +  ++  I+G C+  ++ ++  +  +MI  GI P  
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 643

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKM 470
             +  L     K G  +    LQ++M
Sbjct: 644 AVYNCLISKYQKLGNLEEAISLQDEM 669



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 180/393 (45%), Gaps = 15/393 (3%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVN-------AMRTKRMLNVETFCIIMRKYARVQ 145
           Y HS R    ++  L  +R+  +   LV+       A+  +R         ++   A   
Sbjct: 81  YAHSRR----VLSRLVALRRPHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRG 136

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205
            +++AV     +++  V  N    N +L  L + ++ R  + +F+ +     P+  T++I
Sbjct: 137 LLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLP---APNVFTFNI 193

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +++   K+  L  AR +F  M + GC PD+VT+  ++D   K G +DE   +V+ M  + 
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C+     Y+ L++ +    R+E A   F  M++ G++A+V  ++  + AFCK    +   
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           ++   M  +G+A N  T   +++G    G  D+A  +   M++     +  TYT+++   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+  ++ +A  V + M+      +   ++ LI+G         +  LL +M  KG+    
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             +G L + L    + D  K L  KM+    EP
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I      +  +    L++ M+ K + L++  +  +++    V K++EA      M 
Sbjct: 401 YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMD 460

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKA----QEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
           + G+  N   +  ++ A  KS  V +A    Q+I D     F P+  TY  L++G  K  
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD---SGFQPNVITYCALIDGLCKAG 517

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A   F +M D G +P++  Y  +VD LCK G ++EA+ +   M          +Y+
Sbjct: 518 SIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYT 577

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y  +  + DA     +M  +G+  D+  Y   I  FC  N       V  +M   
Sbjct: 578 ALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGH 637

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRV---FRRMIKLCEADADTYT 378
           G+AP+    N +++     G  +EA  +     R++  C  D+DT T
Sbjct: 638 GIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSC-TDSDTAT 683


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 195/427 (45%), Gaps = 13/427 (3%)

Query: 54  LDQSGIRVSPEIVE--DVLEKFRNAGTLA-FCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + + G R SP++V    V+  F   G ++  C       Q+     V  Y+S++++L K 
Sbjct: 221 MAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKA 280

Query: 111 RQYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           R       ++  M  K    VE    T+  I+  Y+     +E+   F  M   G+  + 
Sbjct: 281 RAMDKAEFVLRQMVDK---GVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDT 337

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             F+  +S+LCK    + A+EIF  M  +  +PD  +YSILL G+  +        +F  
Sbjct: 338 VTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHS 397

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M D G   +     I++    K G +DEA+ +   M     RP    YS L+  +    R
Sbjct: 398 MADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGR 457

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCN 344
           + DA++ F +M   GI  + A+Y++LI  FC           + +M SKG+  PN    +
Sbjct: 458 LADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFS 517

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            I++ L   G   +A  VF  +I + +     T+  +I  +C  G++EKAF V   M   
Sbjct: 518 SIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV 577

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
              P + T + L++G C  G + D  +L  +M+ K ++P+  T+  +   L++ GR    
Sbjct: 578 GIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAA 637

Query: 464 KFLQEKM 470
           K +  +M
Sbjct: 638 KKMFHEM 644



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 183/394 (46%), Gaps = 17/394 (4%)

Query: 96  SVRAYHSMIESLAKIRQYQI----MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +VR Y  +++   + R+  +    +  L+ A      +   TF   ++     ++ +EAV
Sbjct: 123 TVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTF---LKCLCHAKRTDEAV 179

Query: 152 -YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK---DRFIPDSKTYSILL 207
               + M +     +  ++N ++ +LC     ++A ++   M     R  PD  +++ ++
Sbjct: 180 DVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 239

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+ K   + +A  +F EMV  G  PD+ TY  +VD LCKA  +D+A  +++ M      
Sbjct: 240 HGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVE 299

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ ++H Y      +++   F +M   G++ D   +++ + + CK  + K+   +
Sbjct: 300 PDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEI 359

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
            + M +KG  P+  + +I+L+G    G   +   +F  M  K   ++     ++I    +
Sbjct: 360 FQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAK 419

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +++A  V+  M+ +   P++ T+S LI+  C  G ++D+      MI  GI P+   
Sbjct: 420 RGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAV 479

Query: 447 FGKLRKLLIKEGREDVLK---FLQEKMNLLVKEP 477
           +  L       G  D++K   F+ E M+  +  P
Sbjct: 480 YHSLIHGFCMHG--DLVKAKEFISEMMSKGLHRP 511



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 177/405 (43%), Gaps = 41/405 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y  ++   A   ++  M +L ++M  K ++ N     I++  +A+   ++EA+  F  M
Sbjct: 374 SYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEM 433

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           Q  GV  N+  ++ L+SA C+   +  A E F  M    I P++  Y  L+ G+    +L
Sbjct: 434 QGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDL 493

Query: 217 PRAREIFREMVDTGCN------------------------------------PDIVTYGI 240
            +A+E   EM+  G +                                    P IVT+  
Sbjct: 494 VKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNS 553

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           ++D  C  G++++A G++ +M S    P     + LV  Y    +I+D +  F EM    
Sbjct: 554 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKK 613

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           +      YN ++    +A +     ++  +M   G A +  T  I+L GL     TDEA 
Sbjct: 614 VKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAI 673

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            +F ++  + C+ D      MI    +    E+A  ++  +     +P++ T+ V+I  L
Sbjct: 674 TLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNL 733

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
             +G V ++  +   M + G  PS      + ++L+++G  D++K
Sbjct: 734 LKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG--DIVK 776



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 154/318 (48%), Gaps = 16/318 (5%)

Query: 100 YHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           + S+I SL    ++   Q +++LV  +  +    + TF  ++  Y  V K+E+A    + 
Sbjct: 516 FSSIIHSLCIEGRVMDAQDVFNLVIHIGDRP--TIVTFNSLIDGYCLVGKMEKAFGVLDA 573

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M   G+  ++   N L+S  CKS  +     +F + +  +  P + TY+I+L+G  +   
Sbjct: 574 MVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGR 633

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++F EM+D+G   DI TY I++  LC+    DEA+ +   + +  C+    I + 
Sbjct: 634 TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 693

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +++      R E+A D F  +  +G++ +V+ Y  +I    K    +    +   M   G
Sbjct: 694 MINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSG 753

Query: 336 VAPNSRTCNIILNGLIGRGETDEA-YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
            AP+SR  N I+  L+ +G+  +A Y + +    +   +A T ++++ +F   G      
Sbjct: 754 CAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKG------ 807

Query: 395 KVWKYMKLKRFIPSMHTF 412
              K+ +  +F+P+ + F
Sbjct: 808 ---KHREQIKFLPAKYQF 822


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 204/450 (45%), Gaps = 46/450 (10%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL---AKIRQYQIMW 117
           +S   V  VL  F +  + +F +FK      N  H+    + M+E+L    KI +   ++
Sbjct: 85  LSSSEVARVLMSFPDTDS-SFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVF 143

Query: 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           DL+     KR  N  T+  I +  +    + +A +    M+++G   N  ++NGL+  L 
Sbjct: 144 DLMQKRIIKRDTN--TYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLL 201

Query: 178 KSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGK-------------------DPN-- 215
           KS+   +A E++  M  D F P  +TYS L+ G GK                    PN  
Sbjct: 202 KSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVY 261

Query: 216 --------------LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
                         +  A EI + M D GC PD+VTY +++D LC A ++D A  +   M
Sbjct: 262 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKM 321

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYNALIGAFCKANK 320
            +   +P    Y  L+  +  +NR  D+V+ F  EMEK+G + DV  +  L+ A CKA  
Sbjct: 322 KTGRHKPDRVTYITLLDRFS-DNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGN 380

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
           F   +  L  M  +G+ PN  T N ++ GL+     D+A  +F  M  L  +  A TY +
Sbjct: 381 FGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIV 440

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
            I  + + G+   A + ++ MK K   P++   +  +  L   G   ++  +   + + G
Sbjct: 441 FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 500

Query: 440 IRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           + P   T+  + K   K G  ++ +K L E
Sbjct: 501 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 530



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 187/404 (46%), Gaps = 38/404 (9%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
             +  S++ Y S++  L K R  + +  L+  M T  +  NV TF I +R   R  K+ E
Sbjct: 219 DGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 278

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK---------------D 194
           A      M   G   ++  +  L+ ALC ++ +  A+E+F  MK               D
Sbjct: 279 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLD 338

Query: 195 RF---------------------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           RF                     +PD  T++IL++   K  N   A      M D G  P
Sbjct: 339 RFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILP 398

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           ++ TY  ++  L +  R+D+AL I  +M+S   +PT++ Y V +  YG       A++TF
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M+  GI  ++   NA + +  KA + +   ++   +   G+ P+S T N+++      
Sbjct: 459 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 518

Query: 354 GETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           GE DEA ++   M++  CE D      +I    +   +++A+K++  MK  +  P++ T+
Sbjct: 519 GEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTY 578

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           + L+ GL   G + ++  L E M++KG  P+  TF  L   L K
Sbjct: 579 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 622



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 12/342 (3%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKW-AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           V+  I+ D L K   AG     F K    + Q    ++  Y+++I  L ++ +     ++
Sbjct: 366 VTFTILVDALCK---AGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEI 422

Query: 120 VNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            + M +   L V+    T+ + +  Y +      A+ TF  M+  G+  N+ A N  L +
Sbjct: 423 FDNMES---LGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS 479

Query: 176 LCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L K+   R+A++IF  +KD   +PDS TY+++++ + K   +  A ++  EMV+  C PD
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPD 539

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++    +++ L KA RVDEA  +   M     +PT   Y+ L+   G   +I++A++ F 
Sbjct: 540 VIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 599

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            M + G   +   +N L    CK ++     ++L  M   G  P+  T N I+ GL+  G
Sbjct: 600 GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNG 659

Query: 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           +  EA   F +M KL   D  T   ++    + G +E A+K+
Sbjct: 660 QVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDAYKI 701



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 146/329 (44%), Gaps = 39/329 (11%)

Query: 161  GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRA 219
            GV   L  +N L+  L ++  +  AQ++F  +K+   IPD  TY+ LL+ +GK   +   
Sbjct: 782  GVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDEL 841

Query: 220  REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL------------------------ 255
             EI++EM    C P+ +T+ I++  L KAG VD+AL                        
Sbjct: 842  FEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 901

Query: 256  GIVKS------------MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            G+ KS            M    CRP   IY++L++ +G     + A   F  M K G+  
Sbjct: 902  GLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRP 961

Query: 304  DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
            D+  Y+ L+   C   +        +++   G+ P+    N+I+NGL      +EA  +F
Sbjct: 962  DLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLF 1021

Query: 364  RRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M K      D  TY  +I      G +E+A K++  ++     P++ TF+ LI G   
Sbjct: 1022 NEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1081

Query: 422  KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             G    +  + + M+  G  P+  T+ +L
Sbjct: 1082 SGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 142/278 (51%), Gaps = 5/278 (1%)

Query: 178  KSKNVRKAQEIFD-CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  N   A+ +F+   KD  + P   TY++L+ G  +   +  A+++F ++ +TGC PD+
Sbjct: 763  KHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDV 822

Query: 236  VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
             TY  ++D   K+G++DE   I K M +  C P +  +++++        ++DA+D + +
Sbjct: 823  ATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYD 882

Query: 296  MEKNGILADVA-MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            +  +   +  A  Y  LI    K+ +     ++ + M+  G  PN    NI++NG    G
Sbjct: 883  LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAG 942

Query: 355  ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
            E D A  +F+RM+K     D  TY++++   C  G +++    ++ +K     P +  ++
Sbjct: 943  EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYN 1002

Query: 414  VLINGLCDKGIVSDSCVLLEDMIE-KGIRPSGETFGKL 450
            ++INGL     + ++ VL  +M + +GI P   T+  L
Sbjct: 1003 LIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSL 1040



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 191/447 (42%), Gaps = 82/447 (18%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEA 150
           E  V   +S+I +L K  +    W +   MR K M     V T+  ++    +  K++EA
Sbjct: 537 EPDVIVVNSLINTLYKADRVDEAWKMF--MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEA 594

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEG 209
           +  F  M + G   N   FN L   LCK+  V  A + +F  M    +PD  TY+ ++ G
Sbjct: 595 IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG 654

Query: 210 WGKDPNLPRAREIFREMVD-------TGCN--PDIVTYGIMVD----------------- 243
             K+  +  A   F +M         T C   P +V  G++ D                 
Sbjct: 655 LVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPA 714

Query: 244 ----------VLCKAGRVDEAL---------GIVKSMDSTVC------------------ 266
                     +L +AG +D A+         GI +  DS +                   
Sbjct: 715 NLFWEDLMGSILAEAG-IDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARML 773

Query: 267 ----------RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
                     +P    Y++L+      + IE A D FL+++  G + DVA YN L+ A+ 
Sbjct: 774 FEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYG 833

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--KLCEADA 374
           K+ K   ++ + K+M++    PN+ T NI+++GL+  G  D+A  ++  ++  +     A
Sbjct: 834 KSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 893

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I    + G L +A ++++ M      P+   +++LING    G    +C L + 
Sbjct: 894 CTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKR 953

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRED 461
           M+++G+RP  +T+  L   L   GR D
Sbjct: 954 MVKEGVRPDLKTYSVLVDCLCMVGRVD 980



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 142/309 (45%), Gaps = 3/309 (0%)

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N +L AL     + +   +FD M+ R I  D+ TY  + +       L +A    R+M +
Sbjct: 124 NYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMRE 183

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G   +  +Y  ++ +L K+    EA+ + + M     RP+   YS L+   G    IE 
Sbjct: 184 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIES 243

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
            +    EME  G+  +V  +   I    +A K    Y +LK M+ +G  P+  T  ++++
Sbjct: 244 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 303

Query: 349 GLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L    + D A  VF +M     + D  TY  ++  F    +L+   + W  M+    +P
Sbjct: 304 ALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVP 363

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
            + TF++L++ LC  G   ++   L+ M ++GI P+  T+  L   L++  R +D L+  
Sbjct: 364 DVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIF 423

Query: 467 QEKMNLLVK 475
               +L VK
Sbjct: 424 DNMESLGVK 432



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 129  LNVETFC--IIMRKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKA 185
            LN +  C  +I+    +  ++EEA+  FN M+K  G+T +L  +N L+  L  +  V +A
Sbjct: 994  LNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEA 1053

Query: 186  QEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             +I++ ++   + P+  T++ L+ G+        A  +++ MV  G +P+  TY
Sbjct: 1054 GKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 192/386 (49%), Gaps = 8/386 (2%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
           +N + S    HS+I+ L K  +      L+  M +     ++ T  +++ +  +  K++E
Sbjct: 368 RNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQE 427

Query: 150 AVYTFNVMQK--YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSI 205
           A      M +     + +  ++N LL++LCK+K V +A  IF  M  +  F+PD  +YSI
Sbjct: 428 AQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSI 487

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L++G+ K   L RA +++++M+D  C P++ TY   ++ L + GR+ +A G+ + M +  
Sbjct: 488 LIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAG 547

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P    YS L+H + +  + + A + F  M   G   +   YN L+   CK +K    +
Sbjct: 548 CSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAH 607

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            + + M  +G  P+  T   +L G    G+ ++A  VF  M+ K  + D   Y  ++K F
Sbjct: 608 ELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGF 667

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPS 443
            + G+  +A ++++ M  ++  P   + +++I+GL     + D+  + E M  + G  P 
Sbjct: 668 FRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPD 727

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQE 468
             T+  L   L  E R  + +K  +E
Sbjct: 728 LVTYNSLIFGLCGEQRLSEAMKVFKE 753



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 159/325 (48%), Gaps = 5/325 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+S++ SL K ++    + + + M ++R    +V ++ I++  + ++ ++  A   +  M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
                  N+  +N  L+ L +   +  AQ +++ M      PD  TYS L+ G+      
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+F  M+  GC P+ VTY  ++  LCK  + DEA  + + M    C P    Y+ L
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++ +    +IE AV+ F EM   G   DV  YN L+  F +A K     ++ + M S+  
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAF 394
            P++ + NI+++GL      D+A  VF RM +   C  D  TY  +I   C    L +A 
Sbjct: 689 KPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 748

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGL 419
           KV+K +   +  P  H F+VL+  +
Sbjct: 749 KVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 5/335 (1%)

Query: 141 YARVQKVEEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199
           + +++ ++EA   F  M  +     N  A+   LS LCKS  + +A E    M++     
Sbjct: 279 HCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSS 338

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
              Y +L+    +   + +A E   E+      P   T   ++  LCKAGRVD AL +++
Sbjct: 339 QPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLE 398

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN--GILADVAMYNALIGAFCK 317
           +M      P    +S+L++     ++I++A +    M++      +    YN+L+ + CK
Sbjct: 399 TMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCK 458

Query: 318 ANKFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           A K    + +   M S +   P+  + +I+++G     E   A +++++MI L C  +  
Sbjct: 459 AKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVT 518

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY   +    + G +  A  V++ M      P + T+S LI+G         +  L E M
Sbjct: 519 TYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETM 578

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I +G RP+  T+  L   L KE + D    L  KM
Sbjct: 579 ISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 613



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 170/389 (43%), Gaps = 41/389 (10%)

Query: 122 AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           A+ +K  LN   +   +    +  K+E+A      MQ+  ++ +   ++ L+  L +S  
Sbjct: 296 AVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGR 354

Query: 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           + KA+E    +  R I P S T   +++   K   +  A  +   M+  G  PD+ T+ +
Sbjct: 355 IDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSM 414

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI--YSVLVHTYGVENRIEDAVDTFLEM-E 297
           +++ LCKA ++ EA   ++ MD  +   +S    Y+ L+++     ++  A   F  M  
Sbjct: 415 LINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVS 474

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG--- 354
           +   + DV  Y+ LI  FCK ++     ++ K M      PN  T N  LNGL+ +G   
Sbjct: 475 ERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIA 534

Query: 355 --------------------------------ETDEAYRVFRRMI-KLCEADADTYTMMI 381
                                           + D+A+ +F  MI + C  +A TY  ++
Sbjct: 535 DAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLL 594

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+  + ++A ++++ M  +   P   T++ L+ G C+ G +  +  + ++M+ KG  
Sbjct: 595 HGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD 654

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           P    +  L K   + G+    K L + M
Sbjct: 655 PDVVAYNCLLKGFFRAGKPGEAKQLFQVM 683



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 131/309 (42%), Gaps = 37/309 (11%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F  D  TY+ LL+   +  +L +A ++F +MV  G  P+  TY ++V   C     DEA+
Sbjct: 125 FKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAV 184

Query: 256 GIVKSMDSTVCRPTSFIYS-----------------------------------VLVHTY 280
                M     +P+S +Y                                     L+  +
Sbjct: 185 RFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNF 244

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP-N 339
            ++++  +A   F  M K+G   D  +Y+ ++ A CK       +++  +M  +  AP N
Sbjct: 245 VIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLN 304

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
           +      L+GL   G+ ++A+   R M +   +    Y M+I++  + G ++KA +    
Sbjct: 305 NVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLE 364

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +  +   PS  T   +I  LC  G V  +  LLE MI++G  P   T   L   L K  +
Sbjct: 365 IAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADK 424

Query: 460 -EDVLKFLQ 467
            ++  +FLQ
Sbjct: 425 IQEAQEFLQ 433



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  +  V K+E+AV  F+ M   G   ++ A+N LL    ++    +A+++F  M
Sbjct: 624 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVM 683

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGR 250
             R   PD+ +++I+++G  K   L  A E+F  M  D GC+PD+VTY  ++  LC   R
Sbjct: 684 VSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQR 743

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHT------YGVENRIED 288
           + EA+ + K +D     P    ++VL+        Y  E R +D
Sbjct: 744 LSEAMKVFKEIDRLKLSPDPHAFNVLLEAIKCGIVYQFEIRFKD 787



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A   FR +       D+ TY  ++D L +   + +A  + + M +    P  F Y+VLV 
Sbjct: 113 ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQ 172

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
           +   E   ++AV  F EM   G      +Y  +        K     RV      K VA 
Sbjct: 173 SSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAV 232

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
                  +L   + + +  EA ++FR M+K  C+ DA  Y+ M+   C+   L++AFK++
Sbjct: 233 EMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLF 292

Query: 398 KYMKLKRFIPSMH-TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
             M ++   P  +  ++  ++GLC  G +  +      M ++ +  S   +  L +LLI+
Sbjct: 293 LEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIE 351

Query: 457 EGRED 461
            GR D
Sbjct: 352 SGRID 356



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A+  F  ++      DV  YN L+    +    K   +V + M ++GV PN  T  +++
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTY---TMMIKMFCQGGELEKAFKVWKYMKLK 403
                   +DEA R F  M+ K  +  +  Y   T  +K   + GE  + F   + ++ +
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVF--GRDLEKR 229

Query: 404 RFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGETF 447
             +  M   ++L+N +  DK I  ++  L   M++ G +P    +
Sbjct: 230 VAVEMMLKKALLVNFVIQDKAI--EASKLFRAMVKSGCKPDATIY 272


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 181/365 (49%), Gaps = 3/365 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  ++S+I+   K  +   +  LV  MR      +V T+  ++  + +  ++E A   F 
Sbjct: 223 VVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFA 282

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M++ GV  N+  F+  + A CK   VR+A ++F  M+ R +  +  TY+ L++G  K  
Sbjct: 283 AMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAG 342

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +  EMV  G   ++VTY ++VD LCK  +V EA  +++ M+    R    +Y+
Sbjct: 343 RLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYT 402

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H + +    E A+    EM+  G+  D+++Y ALI   C  +K      +L  M+  
Sbjct: 403 TLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES 462

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKA 393
           G+ PN      +++     G+  EA  + ++++    + +  TY  +I   C+ G +++A
Sbjct: 463 GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEA 522

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
              +  M+     P++  ++ L++GLC  G ++++  L  +M+ KG+      +  L   
Sbjct: 523 ISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 582

Query: 454 LIKEG 458
            +K+G
Sbjct: 583 YLKQG 587



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 196/449 (43%), Gaps = 24/449 (5%)

Query: 46  PKVV-LDTALDQSGIRVSPEIVEDVLEKFRNAG---------TLAFCFFKWAEKQQNYEH 95
           P VV  ++ +D  G     + VE ++E+ R +G          L  CF K+   +  Y +
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 96  -----------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYAR 143
                      +V  + + +++  K    +    L   MR + M LN  T+  ++    +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
             ++++A+   + M + GV  N+  +  L+  LCK + V +A+++   M+   +  +   
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELL 400

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L+ G   + N  +A  +  EM + G   DI  YG ++  LC   ++DEA  ++  MD
Sbjct: 401 YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMD 460

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
            +   P   IY+ ++       ++ +A+    ++  +G   +V  Y ALI   CKA    
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
                   M   G+ PN +    +++GL   G  +EA ++F  M+ K    D   YT ++
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             + + G L  AF +   M        +  ++  I+G C+  ++ ++  +  +MI  GI 
Sbjct: 581 DGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIA 640

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           P    +  L     K G  +    LQ++M
Sbjct: 641 PDRAVYNCLISKYQKLGNLEEAISLQDEM 669



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 180/393 (45%), Gaps = 15/393 (3%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVN-------AMRTKRMLNVETFCIIMRKYARVQ 145
           Y HS R    ++  L  +R+  +   LV+       A+  +R         ++   A   
Sbjct: 81  YAHSRR----VLSRLVALRRPHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRG 136

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205
            +++AV     +++  V  N    N +L  L + ++ R  + +F+ +     P+  T++I
Sbjct: 137 LLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLP---APNVFTFNI 193

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +++   K+  L  AR +F  M + GC PD+VT+  ++D   K G +DE   +V+ M  + 
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C+     Y+ L++ +    R+E A   F  M++ G++A+V  ++  + AFCK    +   
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAM 313

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           ++   M  +G+A N  T   +++G    G  D+A  +   M++     +  TYT+++   
Sbjct: 314 KLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGL 373

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+  ++ +A  V + M+      +   ++ LI+G         +  LL +M  KG+    
Sbjct: 374 CKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDI 433

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             +G L + L    + D  K L  KM+    EP
Sbjct: 434 SLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I      +  +    L++ M+ K + L++  +  +++    V K++EA      M 
Sbjct: 401 YTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMD 460

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKA----QEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
           + G+  N   +  ++ A  KS  V +A    Q+I D     F P+  TY  L++G  K  
Sbjct: 461 ESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD---SGFQPNVITYCALIDGLCKAG 517

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A   F +M D G +P++  Y  +VD LCK G ++EA+ +   M          +Y+
Sbjct: 518 SIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYT 577

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y  +  + DA     +M  +G+  D+  Y   I  FC  N       V  +M   
Sbjct: 578 ALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGH 637

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRV---FRRMIKLCEADADTYT 378
           G+AP+    N +++     G  +EA  +     R++  C  D+DT T
Sbjct: 638 GIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSC-TDSDTAT 683


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 161/311 (51%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++  + R   + EA+   + M   G   ++  +N LL+ LCK   +  A+E+ + MK
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R + PD  T++ L+ G+ +D N  +A ++F  ++     PD+V Y  ++D +C+ G + 
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M +    P    YS+L+ ++  + ++E+A     EM   G L ++  YN++I
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
             +C++   K   + L+ M    + P+  T N +++G I       A+ VF  M K + +
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQ 574

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            DA TY M+I  F + G +E+A +V+K M      P  +T+  LING    G   ++  L
Sbjct: 575 PDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQL 634

Query: 432 LEDMIEKGIRP 442
            ++M+ +G  P
Sbjct: 635 HDEMMHRGFAP 645



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 169/343 (49%), Gaps = 3/343 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  T  I++  Y +  + ++A    + M+K  V  ++   N L+ A  ++ +V  A  +
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            D M ++ + P   T++ +L+G  K     +A+E+FR M      PD+ ++ I++   C+
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G V+EA+   K M      P    +S L+  +    +++ A     EM+  G++ D  +
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVI 334

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  +IG FC+A       RV  +M   G  P+  T N +LNGL  +    +A  +   M 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            +    D  T+T +I  +C+ G  EKA +++  +  +R  P +  ++ LI+G+C KG ++
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +  L +DM  + I P+  T+  L     ++G+ E+   FL E
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDE 497



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 186/381 (48%), Gaps = 3/381 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++S+++ L K R++    ++  AM +     +V +F I++  + RV +VEEA+  +  MQ
Sbjct: 230 FNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQ 289

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
           + GVT ++ +F+ L+        +  A      MK    +PD   Y++++ G+ +  ++ 
Sbjct: 290 QRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMS 349

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  EMV  GC PD+VTY  +++ LCK  R+ +A  ++  M      P    ++ L+
Sbjct: 350 EALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLI 409

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H Y  +   E A+  F  +    +  DV  YN+LI   C+         +  DM+++ + 
Sbjct: 410 HGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIF 469

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T +I+++    +G+ +EA+     M+ K    +  TY  +IK +C+ G ++K  + 
Sbjct: 470 PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQF 529

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + M     +P + TF+ LI+G   +  +  +  +   M ++ ++P   T+  +     +
Sbjct: 530 LQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSE 589

Query: 457 EGREDVLKFLQEKMNLLVKEP 477
           +G  +    + +KM     EP
Sbjct: 590 QGNMEEAGRVFKKMGASGIEP 610



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 2/280 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++    +  ++ +A    N M++ GVT +L  F  L+   C+  N  KA ++F
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLF 425

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D +   R  PD   Y+ L++G  +  +L +A E++ +M      P+ VTY I++D  C+ 
Sbjct: 426 DTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEK 485

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+V+EA G +  M S    P    Y+ ++  Y     ++       +M ++ IL D+  +
Sbjct: 486 GQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITF 545

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N LI  + K       + V   M  + V P++ T N+I+NG   +G  +EA RVF++M  
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGA 605

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
              E D  TY  +I      G  ++AF++   M  + F P
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAP 645



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 148/318 (46%), Gaps = 16/318 (5%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP------DSKTYSILLEGWGKDPNL 216
           T     F+ L+    +S+  R+A E F  + D  +P      ++   ++   GW   P+L
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGW---PHL 140

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A E +R ++ +    +  T  IMV   CK+   D+A  ++  M+     P    ++VL
Sbjct: 141 --AEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVL 198

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +        ++ A+     M   G+   +  +N+++   CK  +F     V + M+   V
Sbjct: 199 IDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSV 258

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
           AP+ R+ NI++ G    GE +EA + ++ M +     D  +++ +I +F   G+++ A  
Sbjct: 259 APDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAA 318

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
             + MK    +P    ++++I G C  G +S++  + ++M+  G  P   T+  L   L 
Sbjct: 319 YLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLC 378

Query: 456 KEGR----EDVLKFLQEK 469
           K+ R    E++L  ++E+
Sbjct: 379 KQHRLLDAEELLNEMKER 396



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 129/282 (45%), Gaps = 37/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++++  L K  +     +L+N M+ + +  ++ TF  ++  Y R    E+A+  F+
Sbjct: 367 VVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFD 426

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE------ 208
            +    +  ++ A+N L+  +C+  ++ KA E++D M  R I P+  TYSIL++      
Sbjct: 427 TLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKG 486

Query: 209 -----------------------------GWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                                        G+ +  N+ + ++  ++M+     PD++T+ 
Sbjct: 487 QVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFN 546

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++    K   +  A  +   M+  + +P +  Y+++++ +  +  +E+A   F +M  +
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGAS 606

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           GI  D   Y +LI     A   K  +++  +M  +G AP+ +
Sbjct: 607 GIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDDK 648



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 42/244 (17%)

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           IV S+ ++   P   ++ +L+ TY    +  +A + F  +  + +    +  NAL+ A  
Sbjct: 74  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALS 133

Query: 317 KA---NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--- 370
           +A   +  +  YR++   +S+    N+ T NI+++      E D+A  V   M K C   
Sbjct: 134 RAGWPHLAEEAYRLVLSSDSE---VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFP 190

Query: 371 --------------EADAD-------------------TYTMMIKMFCQGGELEKAFKVW 397
                           D D                   T+  ++K  C+    +KA +V+
Sbjct: 191 DVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVF 250

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           + M      P + +F++LI G C  G V ++    ++M ++G+ P   +F  L  L    
Sbjct: 251 RAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTR 310

Query: 458 GRED 461
           G+ D
Sbjct: 311 GKMD 314


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 228/470 (48%), Gaps = 19/470 (4%)

Query: 17  SFLRRYNSSE--PSTEALDAA----KSISKIMLSSPKVV--LDTALDQSGIRVSPEIVED 68
           S L+R+ S    P  ++L  +     SIS  + +  K +  ++ AL+     +SP+IV  
Sbjct: 5   SLLQRHFSHPKPPWVQSLHTSAIQETSISDEVFTVIKTMNPMEPALEPMVPFLSPKIVTS 64

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS---MIESLAKIRQYQIMWDLVNAMRT 125
           +++   N   L F FF WA   + +    RA+ S   + + L      ++    + A++ 
Sbjct: 65  IIQNPPNP-QLGFRFFIWASNFKRF----RAWESCDLITDLLINQNGLELYCQTLEALKN 119

Query: 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             + ++ + F ++++ Y ++   ++A+ TF  M+ +  T ++  +N +L  L +   +  
Sbjct: 120 GGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLL 179

Query: 185 AQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A  ++   MK   +P+  T+SIL++G  K  N+  A  +F EM   G  PD  TY +++ 
Sbjct: 180 ALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVIS 239

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LC++ RVD+A  +   M  +   P     + L++ + + +R+++A       EK+G + 
Sbjct: 240 GLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVL 299

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           DV  Y+ LI    +A ++++V  + + M    V P+     I++ GL   G+  +A  + 
Sbjct: 300 DVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELL 359

Query: 364 RRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
             M +     D   Y ++IK FC  G L +A  +   +      P++ T+S+LI+G+C  
Sbjct: 360 NEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRN 419

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           G+  D+  +  +M + G  PS  TF  L   L K G+ +    L  KM +
Sbjct: 420 GLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEI 469



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 173/432 (40%), Gaps = 51/432 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           AF   +  EK   Y   VR Y  +I  L + ++Y+ +  L   M    +  +V  + I+M
Sbjct: 285 AFSLLRLFEKD-GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMM 343

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDCMKDRFI 197
           +  A   KV +A+   N M + GV  +   +N L+   C    + +A+ +  +  +    
Sbjct: 344 KGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF 403

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD-------------- 243
           P+ KTYSIL+ G  ++     A+EIF EM   GC P  VT+  ++D              
Sbjct: 404 PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLL 463

Query: 244 ----------------------------------VLCKAGRVDEALGIVKSMDSTVCRPT 269
                                              LC +G + +A  I+  +  +   P 
Sbjct: 464 FYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPG 523

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            + Y++LV+ +        A   F EM+  G+  D   Y  LI    +  + ++ Y+V  
Sbjct: 524 IYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFD 583

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389
            M   G  P++     ++  +  R E   A+ ++ + ++   +  D     I+ + +  E
Sbjct: 584 QMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQE 643

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +EKA +    M  K     +  +++ + GLC    V ++  +   + E  +  +     K
Sbjct: 644 VEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVVITPPCCVK 703

Query: 450 LRKLLIKEGRED 461
           L   L+KEG  D
Sbjct: 704 LIYFLLKEGDLD 715


>gi|242096870|ref|XP_002438925.1| hypothetical protein SORBIDRAFT_10g028400 [Sorghum bicolor]
 gi|241917148|gb|EER90292.1| hypothetical protein SORBIDRAFT_10g028400 [Sorghum bicolor]
          Length = 485

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 152/289 (52%), Gaps = 4/289 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF-REMV 227
            N LL A C    V +A+ +F    D + PD++T++ LL G+ K+     A ++F  + V
Sbjct: 167 LNALLRAFCARGRVAEARALFHRYCDAYPPDTRTFNTLLLGF-KEAGHAHALDLFYHDAV 225

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRI 286
             G  PD V+Y + +D  CK GR  +AL +++ M   V C+PT  +++ L++  G+    
Sbjct: 226 LRGFVPDAVSYCVRMDAYCKKGRFLDALELLEEMRKKVDCKPTLQVFATLIYGAGIVRSA 285

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
             A   F EMEK G+  D   +NAL+GA+ +    ++   V+ DM  KG+  +  + N +
Sbjct: 286 ARARLLFDEMEKWGVTPDRGAHNALMGAYVRGRDLQSAMTVMGDMERKGIGLDDVSYNTM 345

Query: 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI-KMFCQGGELEKAFKVWKYMKLKRF 405
           L G    G+ +  ++V+ +M+          TM++ K+FC+ G  +   ++W Y+  K  
Sbjct: 346 LCGFQRVGDLEGIWKVYSKMVSSGFMPRTRTTMLLMKVFCENGRPDLGLELWDYLMGKGC 405

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +P  H   +L+ GLC +G+VS++     ++IE G+ P+   F  L   L
Sbjct: 406 VPHRHALDILVTGLCCRGVVSEAYRCFREIIEMGMAPTERAFRVLEGFL 454



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 1/205 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            ++ F  ++     V+    A   F+ M+K+GVT +  A N L+ A  + ++++ A  + 
Sbjct: 268 TLQVFATLIYGAGIVRSAARARLLFDEMEKWGVTPDRGAHNALMGAYVRGRDLQSAMTVM 327

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+ + I  D  +Y+ +L G+ +  +L    +++ +MV +G  P   T  +++ V C+ 
Sbjct: 328 GDMERKGIGLDDVSYNTMLCGFQRVGDLEGIWKVYSKMVSSGFMPRTRTTMLLMKVFCEN 387

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR D  L +   +    C P      +LV        + +A   F E+ + G+      +
Sbjct: 388 GRPDLGLELWDYLMGKGCVPHRHALDILVTGLCCRGVVSEAYRCFREIIEMGMAPTERAF 447

Query: 309 NALIGAFCKANKFKNVYRVLKDMNS 333
             L G   +  +   V  + + M +
Sbjct: 448 RVLEGFLRRTRELGKVEEIRQMMKA 472


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 183/377 (48%), Gaps = 5/377 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + SV  Y  ++E++ K   +    ++++ MR K    N+ T+ +I+    R  +V++A  
Sbjct: 177 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 236

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             N +  YG   +  ++  +L  LC +K     +E+F + M+   +P+  T+ +L+  + 
Sbjct: 237 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFC 296

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   + RA ++  +M   GC  +     I+++ +CK GRVD+A   + +M S  C P + 
Sbjct: 297 RGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTI 356

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++       R EDA +   EM +     +   +N  I   C+    +    +++ M
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
           +  G   N  T N ++NG   +G  D A  +F  M   C+ +  TYT ++   C    L+
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNTITYTTLLTGLCNAERLD 474

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++   M  K   P++ TF+VL++  C KG++ ++  L+E M+E G  P+  T+  L 
Sbjct: 475 AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 534

Query: 452 KLLIKE-GREDVLKFLQ 467
             + K+   E+ L+ L 
Sbjct: 535 DGITKDCNSEEALELLH 551



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 122 AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           A R+   ++V  +  ++  Y R  +++ A      M    V  +   +  ++  LC    
Sbjct: 104 AERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGR 160

Query: 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           V +A  + D M  R   P   TY++LLE   K     +A E+  EM   GC P+IVTY +
Sbjct: 161 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNV 220

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ +C+ GRVD+A   +  + S   +P +  Y+ ++       R ED  + F EM +  
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
            + +   ++ L+  FC+    +   +VL+ M+  G A N+  CNI++N +  +G  D+A+
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +    M    C  D  +YT ++K  C+    E A ++ K M  K   P+  TF+  I  L
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           C KG++  + +L+E M E G   +  T+  L      +GR D
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 170/343 (49%), Gaps = 5/343 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++    +     +A+   + M+  G T N+  +N +++ +C+   V  A+E  
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +    F PD+ +Y+ +L+G           E+F EM++  C P+ VT+ ++V   C+ 
Sbjct: 239 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 298

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V+ A+ +++ M    C   + + +++++T   + R++DA      M   G   D   Y
Sbjct: 299 GMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISY 358

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             ++   C+A ++++   +LK+M  K   PN  T N  +  L  +G  ++A  +  +M +
Sbjct: 359 TTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE 418

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             CE +  TY  ++  FC  G ++ A +++  M  K   P+  T++ L+ GLC+   +  
Sbjct: 419 HGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDA 475

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  LL +M++K   P+  TF  L     ++G  D    L E+M
Sbjct: 476 AAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 518



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 156/336 (46%), Gaps = 3/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R   R  +  +A       ++ G   ++ A+N L++  C+   +  A+ +   M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--V 141

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ TY+ ++ G      +  A  +  +M+  GC P +VTY ++++ +CK+    +A+ 
Sbjct: 142 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M +  C P    Y+V+++    E R++DA +    +   G   D   Y  ++   C
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
            A ++++V  +  +M  K   PN  T ++++      G  + A +V  +M    C A+  
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 321

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              ++I   C+ G ++ AF+    M      P   +++ ++ GLC      D+  LL++M
Sbjct: 322 LCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEM 381

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           + K   P+  TF     +L ++G  +    L E+M+
Sbjct: 382 VRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 173/372 (46%), Gaps = 6/372 (1%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
           ++    +Y ++++ L   ++++ + +L   M  K  M N  TF +++R + R   VE A+
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAI 305

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
                M  +G   N    N +++ +CK   V  A +  + M      PD+ +Y+ +L+G 
Sbjct: 306 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +      A+E+ +EMV   C P+ VT+   + +LC+ G +++A  +++ M    C    
Sbjct: 366 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 425

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ LV+ + V+ R++ A++ F  M       +   Y  L+   C A +      +L +
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAE 482

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M  K  APN  T N++++    +G  DEA  +  +M++  C  +  TY  ++    +   
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCN 542

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            E+A ++   +      P + T+S +I  L  +  V ++  +   + + G+RP    + K
Sbjct: 543 SEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNK 602

Query: 450 LRKLLIKEGRED 461
           +   L K    D
Sbjct: 603 ILLALCKRCNTD 614



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 12/290 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM----LNVETF-CIIMRKYARVQKVEEAVYT 153
           +Y ++++ L +  +++   +L+  M  K      +   TF CI+ +K      +E+A   
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK----GLIEQATML 412

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
              M ++G   N+  +N L++  C    V  A E+F  M  +  P++ TY+ LL G    
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--PNTITYTTLLTGLCNA 470

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+  EM+   C P++VT+ ++V   C+ G +DEA+ +V+ M    C P    Y
Sbjct: 471 ERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITY 530

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+     +   E+A++    +  NG+  D+  Y+++IG   + ++ +   ++   +  
Sbjct: 531 NTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQD 590

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            G+ P +   N IL  L  R  TD A   F  M+   C  +  TY  +I+
Sbjct: 591 LGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 640



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  +V    S    P  ++ + L+       R  DA       E++G   DV  YN L+
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 120

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
             +C+  +     R++  M    VAP++ T   I+ GL  RG   EA  +   M+ + C+
Sbjct: 121 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
               TYT++++  C+     +A +V   M+ K   P++ T++V+ING+C +G V D+   
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           L  +   G +P   ++  + K L    R EDV +   E M
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 125/323 (38%), Gaps = 69/323 (21%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST---------- 264
           +L  A  +       G  PD+     ++  LC+ GR  +A  ++++ + +          
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 265 -----VCR-----------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
                 CR                 P ++ Y+ ++       R+ +A+    +M   G  
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
             V  Y  L+ A CK+  F     VL +M +KG  PN  T N+I+NG+   G  D+A   
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 363 FRR------------------------------------MIKLCEADADTYTMMIKMFCQ 386
             R                                    M K C  +  T+ M+++ FC+
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           GG +E+A +V + M       +    +++IN +C +G V D+   L +M   G  P   +
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357

Query: 447 FGKLRKLLIKEGR-EDVLKFLQE 468
           +  + K L +  R ED  + L+E
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKE 380



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 3/249 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
            +   E ++  Y++++       +     +L  +M  K   N  T+  ++      ++++
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKP--NTITYTTLLTGLCNAERLD 474

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A      M +     N+  FN L+S  C+   + +A E+ + M +    P+  TY+ LL
Sbjct: 475 AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 534

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  KD N   A E+   +V  G +PDIVTY  ++ VL +  RV+EA+ +   +     R
Sbjct: 535 DGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR 594

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P + IY+ ++         + A+D F  M  NG + +   Y  LI      +  K    +
Sbjct: 595 PKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDL 654

Query: 328 LKDMNSKGV 336
           L+++ S+GV
Sbjct: 655 LRELCSRGV 663



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y +++  L    +     +L+  M  K    NV TF +++  + +   ++EA+     M 
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           ++G T NL  +N LL  + K  N  +A E+   +    + PD  TYS ++    ++  + 
Sbjct: 520 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 579

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++F  + D G  P  V Y  ++  LCK    D A+     M S  C P    Y  L+
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639

Query: 278 HTYGVENRIEDAVDTFLEMEKNGIL 302
                E+ +++  D   E+   G+L
Sbjct: 640 EGLANEDFLKETRDLLRELCSRGVL 664


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 167/348 (47%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I++L K +     + L + M  K +  +V T+  ++  +    K++EA+   
Sbjct: 198 NVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLL 257

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           N M    +  N+  +N L+ ALCK   V++A+ +   M    + PD  TYS L++G+   
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLV 317

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L +A+ +F  M   G  PD+ +Y I+++  CK   VDEAL + K M      P    Y
Sbjct: 318 YELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTY 377

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+       RI    D   EM   GI A+V  YN+LI   CK         +   M  
Sbjct: 378 SSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKD 437

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +G+ P S T  I+L+GL   G   +A   F+ ++ K    D   Y +MI   C+ G LE+
Sbjct: 438 QGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEE 497

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           A  +   M+    +P+  TF ++IN L  K     +  LL  MI +G+
Sbjct: 498 ALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 178/371 (47%), Gaps = 6/371 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           QN  HS   +HS   S+  +      ++ +  MR      +  F  I+  +A+++    A
Sbjct: 23  QNSSHS--HFHSQPPSIQNVDDAVSQFNRMLCMR--HTPPIIQFNKILDSFAKIKHYSTA 78

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEG 209
           V   + ++  G+  +L   N L++  C    +     +    +K  + P + T++ L++G
Sbjct: 79  VSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKG 138

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                 + +A     +++  G   D V+YG +++ +CK G    A+ +V+ +D  + +P 
Sbjct: 139 LCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPN 198

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
             +Y+ ++        + +A   F EM   GI ADV  Y  LI  FC A+K K    +L 
Sbjct: 199 VEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLN 258

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGG 388
           +M  K + PN  T NI+++ L   G+  EA  V   M+K C + D  TY+ ++  +    
Sbjct: 259 EMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVY 318

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           EL+KA  V+  M L    P +H++++LING C   +V ++  L ++M +K + P   T+ 
Sbjct: 319 ELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYS 378

Query: 449 KLRKLLIKEGR 459
            L   L K GR
Sbjct: 379 SLIDGLCKSGR 389



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/514 (22%), Positives = 229/514 (44%), Gaps = 51/514 (9%)

Query: 5   YHSRNKMISGCISFLRRYN------SSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSG 58
           +HS+   I      + ++N       + P  +      S +KI   S  V L   L+  G
Sbjct: 30  FHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKG 89

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           I+     +  ++  F + G + F F   A+  ++ Y+     + ++I+ L    Q     
Sbjct: 90  IQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKAL 149

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
              + +  + +  +  ++  ++    ++     A+     +       N+  +N ++ AL
Sbjct: 150 HFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDAL 209

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK + V +A  +F  M  + I  D  TY+ L+ G+     L  A  +  EMV    NP++
Sbjct: 210 CKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNV 269

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL------------------- 276
            TY I+VD LCK G+V EA  ++  M     +P    YS L                   
Sbjct: 270 YTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNA 329

Query: 277 ---------VHTYGV------ENR-IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
                    VH+Y +      +N+ +++A++ F EM +  ++  +  Y++LI   CK+ +
Sbjct: 330 MSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM----IKLCEADADT 376
              V+ ++ +M  +G+  N  T N +++GL   G  D A  +F +M    I+ C     T
Sbjct: 390 ISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSF---T 446

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           +T+++   C+GG L+ A + ++ +  K +   ++ ++V+ING C +G++ ++  +L  M 
Sbjct: 447 FTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKME 506

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           E G  P+  TF  +   L K+   D  + L  +M
Sbjct: 507 ENGCVPNAVTFDIIINALFKKDENDKAEKLLRQM 540



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 35/214 (16%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
           Q+N    +  Y S+I+ L K  +   +WDL++ MR +                       
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR----------------------- 403

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
                      G+  N+  +N L+  LCK+ ++ +A  +F+ MKD+ I P S T++ILL+
Sbjct: 404 -----------GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLD 452

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   L  A+E F++++  G + D+  Y +M++  CK G ++EAL ++  M+   C P
Sbjct: 453 GLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVP 512

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
            +  + ++++    ++  + A     +M   G+L
Sbjct: 513 NAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 186/410 (45%), Gaps = 39/410 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S++ Y +++ +L K R  + +  L+  M +  +  N+ TF I +R   R  K++EA    
Sbjct: 226 SLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGIL 285

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M   G   ++  +  L+ ALC +  +  A+E+F  MK     PD  TY  LL+ +   
Sbjct: 286 KRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDH 345

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L   +E + EM   G  PD+VT+ I++D LCK G+VDEA G +  M      P    Y
Sbjct: 346 GDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTY 405

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+      NR+++A++ F  ME  G+      Y   I  + K+ +     +  + M +
Sbjct: 406 NTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKT 465

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEK 392
            G+ PN   CN  L  L  +G  +EA   F  + K   A DA TY ++++ + + G ++ 
Sbjct: 466 NGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDD 525

Query: 393 AFKV--------------------------------WKY---MKLKRFIPSMHTFSVLIN 417
           A K+                                WK    MK  +  P++ T++ L+ 
Sbjct: 526 AIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLA 585

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFL 466
           GL  +G V ++  L + MI     P+  +F  L   L K G  D+ LK L
Sbjct: 586 GLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKML 635



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 203/466 (43%), Gaps = 48/466 (10%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTL-----AFCFFKWAEKQQNYEHSVRAYHSM 103
           V+ ++ D   ++  PE      E +R   ++     AF FF    +     H+    + +
Sbjct: 69  VIRSSFDVVVVKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYV 128

Query: 104 IESLAKIRQYQIMWDLVNAMR---TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +E L   R+ + M  + N M+    KR +N  T+  I +       + EA      M+K 
Sbjct: 129 LEMLRAHRRVEDMVVVFNLMQKQIIKRSIN--TYLTIFKVLYIRGGLREAPVALEKMRKV 186

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL------------ 207
           G   N  ++ GL+  L KS   R+A +++  M    I P  KTYS L+            
Sbjct: 187 GFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETV 246

Query: 208 -------EGWGKDPNL----------------PRAREIFREMVDTGCNPDIVTYGIMVDV 244
                  E  G  PN+                  A  I + M D GC PD+VTY +++D 
Sbjct: 247 MGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDA 306

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           LC AG+++ A  +   M ++  +P    Y  L+  +     ++   + + EME +G L D
Sbjct: 307 LCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPD 366

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  +  LI A CK  K    +  L  M  +GVAPN  T N ++ GL+     DEA  +F 
Sbjct: 367 VVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFN 426

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            M  L  E  A TY + I  + + GE  KA K ++ MK    +P++   +  +  L ++G
Sbjct: 427 SMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQG 486

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            + ++      + + G+ P   T+  L +   K GR +D +K L E
Sbjct: 487 RLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSE 532



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 2/312 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K+Q    ++  Y+++I  L ++ +     +L N+M +  +     T+ + +  Y +  + 
Sbjct: 394 KKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGES 453

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206
            +A+ TF  M+  G+  N+ A N  L +L +   + +A+E F+ +K     PD+ TY+IL
Sbjct: 454 GKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNIL 513

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           +  +GK   +  A ++  EM + GC+P++V    ++D L KA RVDEA  + + M     
Sbjct: 514 MRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKL 573

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            PT   Y+ L+   G E R+++A   F  M  +    +   +N L+   CK  +     +
Sbjct: 574 APTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALK 633

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +L  M      P+  T N ++ GLI     + A+ +F +M K+   D  T   ++    +
Sbjct: 634 MLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIK 693

Query: 387 GGELEKAFKVWK 398
            G +E AF+V K
Sbjct: 694 DGRIEDAFRVAK 705



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 162/325 (49%), Gaps = 3/325 (0%)

Query: 96   SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
            S+ AY+S+I+ L K R  ++ W L   M+      +V T+ + +    +  K++E    +
Sbjct: 787  SLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLY 846

Query: 155  NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
              M   G   N    N ++  L KS ++ KA +++ D M   F P   TY  L++G  K 
Sbjct: 847  EEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906

Query: 214  PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
              L  A++ F EM+D GC P+   Y I+++   K G V+ A  + + M     RP    Y
Sbjct: 907  GRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966

Query: 274  SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            S++V    +  +++DA+  F E++ +G+  D+  YN +I    ++ + +    +  +M +
Sbjct: 967  SIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRN 1026

Query: 334  KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
            +G+ P+  T N ++  L   G  +EA +++  + +K  E +  TY  +I+     G  ++
Sbjct: 1027 RGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDR 1086

Query: 393  AFKVWKYMKLKRFIPSMHTFSVLIN 417
            A+ V+K M +    P+  TF+ L N
Sbjct: 1087 AYAVYKKMMVGGCRPNTGTFAQLPN 1111



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 164/329 (49%), Gaps = 8/329 (2%)

Query: 149  EAVYTFNVMQK----YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTY 203
            +AV  +NV  K    + +T +L A+N L+  L K++    A  +F  MK+    PD  TY
Sbjct: 767  KAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTY 826

Query: 204  SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            ++ L+  GK   +    +++ EM+  GC P+ +T+ I++  L K+  +D+A+ +   + S
Sbjct: 827  NLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMS 886

Query: 264  TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
                PT + Y  L+       R+E+A   F EM   G + +  +YN L+  F K    + 
Sbjct: 887  GDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVET 946

Query: 324  VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMI 381
               + + M  +G+ P+ ++ +I+++ L   G+ D+A   F  + KL   D D   Y +MI
Sbjct: 947  ACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEEL-KLSGLDPDLVCYNLMI 1005

Query: 382  KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
                +   +E+A  ++  M+ +   P ++T++ LI  L   G+V ++  + E++  KG+ 
Sbjct: 1006 NGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLE 1065

Query: 442  PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P+  T+  L +     G  D    + +KM
Sbjct: 1066 PNVFTYNALIRGHSMSGNPDRAYAVYKKM 1094



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 3/282 (1%)

Query: 172  LLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+  LCK      A  +F  +   F   P  + Y+ L++G  K      A  +F +M + 
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 230  GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
            GC PD+ TY + +D L K+G++ E   + + M    C+P +  +++++      N ++ A
Sbjct: 818  GCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKA 877

Query: 290  VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +D + ++           Y  LI    K  + +   +  ++M   G  PN    NI++NG
Sbjct: 878  IDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNG 937

Query: 350  LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               +G+ + A  +FRRM+K     D  +Y++M+   C  G+++ A   ++ +KL    P 
Sbjct: 938  FGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPD 997

Query: 409  MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +  ++++INGL     V ++  L ++M  +GI P   T+  L
Sbjct: 998  LVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNAL 1039



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 178/444 (40%), Gaps = 77/444 (17%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           +S+I++L K  +    W +   M+  ++   V T+  ++    +  +V+EA   F  M  
Sbjct: 546 NSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA 605

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQE-------------------------------- 187
                N  +FN LL  LCK+  V  A +                                
Sbjct: 606 DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNY 665

Query: 188 ---IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV----------------- 227
              +F  MK    PD  T   LL G  KD  +  A  + +E V                 
Sbjct: 666 AFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMG 725

Query: 228 --------------------DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC- 266
                               +T C  D V    +V  LCK G+  +A  +   +  + C 
Sbjct: 726 GILIEAEIGQSILFAESLVCNTICEDDSVLIP-LVKFLCKHGKAVDAYNVFLKLTKSFCI 784

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P+   Y+ L+         E A   F +M+  G   DV  YN  + A  K+ K K ++ 
Sbjct: 785 TPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFD 844

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFC 385
           + ++M  +G  PN+ T NI++ GL+     D+A  ++  ++    +    TY  +I    
Sbjct: 845 LYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLL 904

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G LE+A + ++ M     +P+   +++L+NG   +G V  +C L   M+++GIRP  +
Sbjct: 905 KLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLK 964

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQE 468
           ++  +   L   G+ +D L + +E
Sbjct: 965 SYSIMVDCLCMVGKVDDALHYFEE 988



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 1/222 (0%)

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           RV++ + +   M   + + +   Y  +     +   + +A     +M K G + +   Y 
Sbjct: 137 RVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYI 196

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI    K+   +   +V + M S+G+ P+ +T + ++  L  R + +    + + M  L
Sbjct: 197 GLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               +  T+T+ I++  + G++++A+ + K M      P + T++VLI+ LC+ G ++++
Sbjct: 257 GLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             L   M     +P   T+  L       G  D +K    +M
Sbjct: 317 KELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEM 358



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 1/194 (0%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R+ED V  F  M+K  I   +  Y  +          +     L+ M   G   N  +  
Sbjct: 137 RVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYI 196

Query: 345 IILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +++ L+  G   EA +V+RRM+ +  +    TY+ ++    +  ++E    + + M+  
Sbjct: 197 GLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
              P+++TF++ I  L   G + ++  +L+ M + G  P   T+  L   L   G+ +  
Sbjct: 257 GLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316

Query: 464 KFLQEKMNLLVKEP 477
           K L  KM     +P
Sbjct: 317 KELFLKMKASSHKP 330



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 322 KNVYRVLKDM----------NSKGVAP----NSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           + VYRVLK +          NS    P     + TCN +L  L      ++   VF  M 
Sbjct: 90  EEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQ 149

Query: 368 K-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K + +   +TY  + K+    G L +A    + M+   F+ + +++  LI+ L   G   
Sbjct: 150 KQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCR 209

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
           ++  +   M+ +GI+PS +T+  L   L K    E V+  LQE  +L
Sbjct: 210 EALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 207/449 (46%), Gaps = 38/449 (8%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIES 106
           +VL   + +SG+  +      +++     G +   F  ++E K +    SV + +S++E 
Sbjct: 283 LVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEG 342

Query: 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
             K + +Q  + + N      + NV TF  ++    +  K+ EA   ++ +   G++ N+
Sbjct: 343 YLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNV 402

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
            ++N ++   C+  N+  A +++  M D  F P++ T++IL++G+ K  ++  A  IF  
Sbjct: 403 VSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHR 462

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEAL-----------------------GIVK--- 259
           M D    P   T GI++  LCKAGR  E                         G +K   
Sbjct: 463 MKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGN 522

Query: 260 -SMDSTVCR--------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
            ++ S V R        P++  Y+ L+  +   N I+ A+    +M++ G+  D+  Y  
Sbjct: 523 INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGT 582

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI  FCK    K+ + +L ++   G++PN    N ++ G       +EA  ++++M+ + 
Sbjct: 583 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 642

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              D  TYT +I    + G L  A  +   M  K  +P     +VLINGLC+KG   ++ 
Sbjct: 643 IPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENAR 702

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +LEDM  K + PS   +  L     KEG
Sbjct: 703 KILEDMNGKNMIPSVLIYNTLIAGHFKEG 731



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 37/326 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  TF I+M  Y +   +E A   F+ M+   +         ++  LCK+    + +++F
Sbjct: 436 NAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLF 495

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY---------- 238
           +  +   F+P    Y+ +++G+ K+ N+  A  ++REM + G  P  VTY          
Sbjct: 496 NKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKG 555

Query: 239 -------------------------GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                                    G ++D  CK   +  A  ++  +      P  FIY
Sbjct: 556 NNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIY 615

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  +   N +E+A+D + +M   GI  D+  Y +LI    K+ +      +  +M S
Sbjct: 616 NSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLS 675

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG+ P+ R   +++NGL  +G+ + A ++   M  K        Y  +I    + G L++
Sbjct: 676 KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQE 735

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLING 418
           AF++   M  +  +P   T+ +L+NG
Sbjct: 736 AFRLHDEMLDRGLVPDNITYDILVNG 761



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 171/385 (44%), Gaps = 7/385 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKV 147
           K +  E    AY   +  L           L+  MR    +  E TF  ++    +   V
Sbjct: 185 KARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNV 244

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
            EA+   + M   G + NLA    L+   C   N+R A  + + + +   +P+  TYS+L
Sbjct: 245 AEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVL 304

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK-SMDSTV 265
           ++G  K+ N+ +A E + EM   G    + +   +++   K      A  +   +++S +
Sbjct: 305 IDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL 364

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
                F ++ L+     E ++ +A + + E+   GI  +V  YN +I   C+ +      
Sbjct: 365 --ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAAC 422

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMF 384
           +V K+M   G  PN+ T  I+++G   +G+ + A+ +F RM        D T  ++IK  
Sbjct: 423 KVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGL 482

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G   +   ++     + F+P+   ++ +I+G   +G ++ +  +  +M E GI PS 
Sbjct: 483 CKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPST 542

Query: 445 ETFGKLRKLLIKEGREDV-LKFLQE 468
            T+  L     K    D+ LK L +
Sbjct: 543 VTYTSLIDGFCKGNNIDLALKLLND 567



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 1/279 (0%)

Query: 181 NVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           N+ +A++ F   K R +  D + YSI +      PN   A  + REM   G  P   T+ 
Sbjct: 173 NILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFT 232

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++    K G V EAL +   M +        + + L+  Y ++  +  A+    E+ ++
Sbjct: 233 SVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISES 292

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G++ +   Y+ LI   CK    +  +    +M +KG+  +  + N IL G +       A
Sbjct: 293 GLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNA 352

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           + +F   ++   A+  T+  ++   C+ G++ +A  +W  +  K   P++ +++ +I G 
Sbjct: 353 FTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGH 412

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           C K  ++ +C + ++M++ G  P+  TF  L     K+G
Sbjct: 413 CRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKG 451



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S   Y S+I+   K     +   L+N M+ K + ++++ +  ++  + + + ++ A    
Sbjct: 541 STVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELL 600

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
           N ++  G++ N   +N +++      NV +A +++  M +  IP D KTY+ L++G  K 
Sbjct: 601 NELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKS 660

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A +I  EM+  G  PD   + ++++ LC  G+ + A  I++ M+     P+  IY
Sbjct: 661 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIY 720

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + L+  +  E  +++A     EM   G++ D   Y+ L+  
Sbjct: 721 NTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 761


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 170/340 (50%), Gaps = 4/340 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           Y+++I  L K          +  M      NV ++ II+  Y + + +E+A+     M++
Sbjct: 67  YNNLISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEE 126

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPR 218
            G      A++ ++ + CK+ NV KA ++F  M  +   PD   +++LL G  +   +  
Sbjct: 127 LGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHE 186

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           ARE+FR M   GC PD+VTY  M+  LCK  ++DEA+ +++ M      PT   Y+ L+ 
Sbjct: 187 ARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLID 246

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALI--GAFCKANKFKNVYRVLKDMNSKGV 336
                 R++ A + F +M +         Y+ LI     CKA +      + ++M  +G+
Sbjct: 247 HLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGI 306

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFK 395
           +P   T N +L GL+   +  +A  +   M+    A +  TY ++I   C+  ++E+AFK
Sbjct: 307 SPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFK 366

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           +   M+ K F+PS+  + VL++ L   G + D+  L ++M
Sbjct: 367 LLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEM 406



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 38/370 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V++ C+++R + +    +      + M + G+  N   +N L+S LCK+  + +A+   
Sbjct: 28  DVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYL 87

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             M     P+  +Y+I+++G+ K  N+ +A    REM + G  P    Y  +V   CK G
Sbjct: 88  KRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTG 147

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            V +A+ +   M +  C P    ++VL+       +I +A + F  M   G   DV  YN
Sbjct: 148 NVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYN 207

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
            +I   CK  K      +L+ M  + V+P   T   +++ L       +AY VF +M + 
Sbjct: 208 TMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEG 267

Query: 369 --LCEADADTYTMMIKMFCQG---GELEKAF--------------------------KVW 397
              C   A +  ++I   C+    GE ++ F                          K+ 
Sbjct: 268 PCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQ 327

Query: 398 KYMKLKRFI------PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
             M+L  F+      P+M T+ +LI+ LC    V ++  LL  M +KG  PS + +  L 
Sbjct: 328 DAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLL 387

Query: 452 KLLIKEGRED 461
             L + GR D
Sbjct: 388 SRLARAGRLD 397



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 3/264 (1%)

Query: 176 LCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L ++  V +A+ I + MK   F PD +++ +L+ G+ K  +  R       M++ G  P+
Sbjct: 4   LVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPN 63

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
            + Y  ++  LCKAG + EA   +K M    C P    Y++++  Y     IE A+    
Sbjct: 64  AILYNNLISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLR 122

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           EME+ G       Y++++ +FCK         V  +M +KG  P+    N++L+GL    
Sbjct: 123 EMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRAR 182

Query: 355 ETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           +  EA  +FR M  + C+ D  TY  MI   C+  +L++A  + + MK +   P+  T++
Sbjct: 183 KIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYT 242

Query: 414 VLINGLCDKGIVSDSCVLLEDMIE 437
            LI+ LC    +  +  + E M E
Sbjct: 243 TLIDHLCKFARLQQAYEVFEKMAE 266



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 167/349 (47%), Gaps = 6/349 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQ 112
           +++ G   +P     +++ F   G ++     +AE   +  E  +  ++ ++  L + R+
Sbjct: 124 MEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARK 183

Query: 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                +L  +M ++    +V T+  ++    + +K++EAV+    M++  V+     +  
Sbjct: 184 IHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTT 243

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYS--ILLEGWGKDPNLPRAREIFREMVD 228
           L+  LCK   +++A E+F+ M +   P ++  YS  IL+ G  K      A+E+F+EM  
Sbjct: 244 LIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRG 303

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P +VTY  +++ L    ++ +A+ +   M   V  P  F Y +L+ +    +++E+
Sbjct: 304 RGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEE 363

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A      M   G +  + ++  L+    +A +  + + + K+M+         + NI+L+
Sbjct: 364 AFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLD 423

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           G++ RG  DEA    ++M       D  TY  ++   C  G+ ++A K+
Sbjct: 424 GILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKL 472



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 4/276 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++MI  L K ++      L+  M+ + +     T+  ++    +  ++++A   F 
Sbjct: 203 VVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFE 262

Query: 156 VMQKYGVTQNLAAFNGLL--SALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
            M +        A++ L+  + LCK++   +A+E+F  M+ R I P   TY+ LLEG   
Sbjct: 263 KMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLS 322

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L  A E+   M+D    P++ TY I++  LCK  +V+EA  ++ +M      P+  I
Sbjct: 323 TAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKI 382

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           + VL+       R++DA + + EM +      V   N L+    +          LK M 
Sbjct: 383 WEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMT 442

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             G+ P+  T + ++ GL  +G+ D+A ++   +++
Sbjct: 443 DTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVR 478



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 112/251 (44%), Gaps = 4/251 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE---TFCIIMRKYARVQ 145
           KQ++   +   Y ++I+ L K  + Q  +++   M        E   +  I++    + +
Sbjct: 230 KQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKAR 289

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYS 204
           +  EA   F  M+  G++  +  +N LL  L  +  ++ A E+   M D+   P+  TY 
Sbjct: 290 RPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYE 349

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           IL+    K   +  A ++   M D G  P +  + +++  L +AGR+D+A  + K M   
Sbjct: 350 ILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRI 409

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C+      ++L+        +++A D   +M   GI+ D   Y+ L+   C   K    
Sbjct: 410 NCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQA 469

Query: 325 YRVLKDMNSKG 335
            ++++++   G
Sbjct: 470 RKLVEELVRDG 480



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 2/227 (0%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L +A  V +A  IV+ M      P    + +L+  +      +        M + G+  +
Sbjct: 4   LVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPN 63

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
             +YN LI   CKA         LK M  +  APN  + NII++G       ++A    R
Sbjct: 64  AILYNNLISCLCKAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKARNIEKALAFLR 122

Query: 365 RMIKLCEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            M +L        Y+ +++ FC+ G + KA  V+  M  K   P +  F+VL++GL    
Sbjct: 123 EMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRAR 182

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            + ++  L   M  +G +P   T+  +   L K  + D   FL E+M
Sbjct: 183 KIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERM 229


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 181/366 (49%), Gaps = 3/366 (0%)

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMR 139
           F FF+WA++Q  Y H+   +  M+  L++ R +     ++  M  + M      F  +M 
Sbjct: 110 FEFFRWADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLML 169

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
            Y+R  K+  A+    +MQK G   ++   N  ++ L  +  + KA E  + M+   + P
Sbjct: 170 SYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDP 229

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  TY+ L++G      +  A E+   M+  GC PD ++Y  ++  LCK  RV +   ++
Sbjct: 230 DVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLL 289

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + M      P    Y++L+H        ++A+    E E      D   Y+A + +FC  
Sbjct: 290 ERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLN 349

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTY 377
            +      ++ +M SKG  P+  T + +++G    GE D+A ++ + M K  C+ +  T+
Sbjct: 350 GRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTH 409

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T ++   C+ G+  +A+++    + + + PS  T+SV+++G   +G + +SC ++  M++
Sbjct: 410 TALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQ 469

Query: 438 KGIRPS 443
           KG  P+
Sbjct: 470 KGFFPT 475



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 163/361 (45%), Gaps = 50/361 (13%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMV 227
           F+ +L  L +++    A+ +   M  R +P  ++ ++ L+  + +   L  A  + + M 
Sbjct: 129 FDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQ 188

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC PDI    + V+VL  AGR+D+AL   + M      P    Y+ L+       RI 
Sbjct: 189 KDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIV 248

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           DA++    M +NG L D   Y  ++   CK  +  +V  +L+ M+  G+ P+  T N+++
Sbjct: 249 DALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLI 308

Query: 348 NGLIGRGETDEAYRVFR-------------------------RMI-----------KLCE 371
           +GL   G  DEA    R                         RM            K C 
Sbjct: 309 HGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCR 368

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY+ ++  FC+ GEL++A K+ K+M      P+  T + L+NGLC  G  S++  L
Sbjct: 369 PDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWEL 428

Query: 432 LEDMIEKGIRPSGETF-----GKLRKLLIKEGREDVLKFLQE-------KMNLLVKEPLC 479
           L    E+   PS  T+     G  R+  +KE  + V++ LQ+       ++NLL+   LC
Sbjct: 429 LNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLI-HALC 487

Query: 480 D 480
           +
Sbjct: 488 N 488



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 150/308 (48%), Gaps = 2/308 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++   A+    +EA+      +      +   ++  + + C +  + +A+EI   M
Sbjct: 303 TYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEM 362

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             +   PD  TYS +++G+ +   L +AR++ + M   GC P+ VT+  +++ LCK G+ 
Sbjct: 363 ISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKS 422

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  ++   +     P++  YSV++H +  E +++++ D  ++M + G        N L
Sbjct: 423 SEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLL 482

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLC 370
           I A C   K  +    ++   SKG   N      +++G   +G+ + A  +   M +   
Sbjct: 483 IHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNR 542

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TYT+++    + G++++A  + + M  +   P+  T+  +I+  C+KG V D   
Sbjct: 543 HPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLN 602

Query: 431 LLEDMIEK 438
           LL+ M+ K
Sbjct: 603 LLDKMLAK 610



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 131/283 (46%), Gaps = 14/283 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + +++  L K+ +    W+L+N    +    +  T+ ++M  + R  K++E+      M 
Sbjct: 409 HTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQML 468

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G        N L+ ALC  +    A++  + C       +   ++ ++ G+ +  +L 
Sbjct: 469 QKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLE 528

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  +M  T  +PD+VTY ++VD L + G++ EA  +V+ M +    PT   Y  ++
Sbjct: 529 SALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVI 588

Query: 278 HTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           H Y  +  +ED ++   +M  K G     + YN +I   C   K      +L  +     
Sbjct: 589 HRYCEKGAVEDLLNLLDKMLAKEGF---SSAYNQVIEKLCAFGKLSEANNLLSKVLRTAS 645

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM--------IKLCE 371
             +++TC+I+++  + RG   ++Y V  RM        +KLC+
Sbjct: 646 KRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIPDLKLCQ 688


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 164/325 (50%), Gaps = 2/325 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++  ++  Y    ++++ +     MQ  G+  NL  +N ++  LCKS  V  A+ + 
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M ++  +PD+  Y+ L++G+ K  N+  A ++F EM      PD + Y  ++  LC+ 
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ EA  +   M S    P    Y+ L+  Y     +E A     +M ++G+  +V  Y
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTY 188

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
            AL    CK  +      +L +M  KG+  N  T N ++NGL   G   +A ++   M +
Sbjct: 189 TALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  T+T ++  +C+ GE+ KA ++ + M  +   P++ TF+VL+NG C  G++ D
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLED 308

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRK 452
              LL  M+EKGI P+  T+  L K
Sbjct: 309 GERLLAWMLEKGIMPNTTTYNSLMK 333



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 159/316 (50%), Gaps = 2/316 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           +  ++  + ++  ++ A   F+ M+K  +  +  A+  ++  LC+   + +A ++F+ M 
Sbjct: 83  YTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMF 142

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            R + PD  TY+ L++G+ K   + +A  +  +MV +G  P++VTY  + D LCK G+VD
Sbjct: 143 SRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVD 202

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  ++  M     +     Y+ LV+       I  AV    EME  G+  D   +  L+
Sbjct: 203 TANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLM 262

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
            A+CK  +    + +L++M  +G+ P   T N+++NG    G  ++  R+   M+ K   
Sbjct: 263 DAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIM 322

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +  TY  ++K +C    +    +++K M  +  +P  +T+++LI G C    + ++  L
Sbjct: 323 PNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFL 382

Query: 432 LEDMIEKGIRPSGETF 447
            ++M EKG   +  ++
Sbjct: 383 HKEMAEKGFNLTASSY 398



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 134/263 (50%), Gaps = 1/263 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  +YS ++ G+     L +  ++ +EM   G  P++ TY  ++ +LCK+G+VD+A  +
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M +    P + +Y+ L+  +     I+ A   F EMEK  I+ D   Y A+I   C+
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
             K     +V   M S+GV P+  T   +++G    GE ++A+ +  +M++     +  T
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           YT +    C+ G+++ A ++   M  K    ++ T++ L+NGLC  G +  +  L+E+M 
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEME 247

Query: 437 EKGIRPSGETFGKLRKLLIKEGR 459
             G+ P   TF  L     K G 
Sbjct: 248 VAGMYPDTITFTTLMDAYCKTGE 270



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD+V+Y  +++  C  G + + L +++ M     +P  + Y+ ++       +++DA   
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM   GI+ D  +Y  LI  FCK    +  Y++  +M  + + P+      ++ GL  
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G+  EA +VF +M  +  E D  TYT +I  +C+ GE+EKAF +   M      P++ T
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           ++ L +GLC  G V  +  LL +M  KG++ +  T+  L   L K G     +K ++E
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEE 245



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 136/309 (44%), Gaps = 37/309 (11%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I+   K  + +  + L N M ++    NV T+  +     ++ +V+ A    + M
Sbjct: 152 TYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM 211

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
              G+  N+  +N L++ LCKS N+R+A ++ + M+     PD+ T++ L++ + K   +
Sbjct: 212 CGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEM 271

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+ REM+D G  P ++T+ ++++  C +G +++   ++  M      P +  Y+ L
Sbjct: 272 VKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSL 331

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI------------------------ 312
           +  Y + N +    + +  M   G++ D   YN LI                        
Sbjct: 332 MKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGF 391

Query: 313 -----------GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
                        F K  K      + ++M  +G+A ++   N+ ++   G G  + A  
Sbjct: 392 NLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALE 451

Query: 362 VFRRMIKLC 370
           +    I+ C
Sbjct: 452 LCDEAIENC 460



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 1/176 (0%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+  G   DV  Y+ +I  +C   + + V +++++M  KG+ PN  T N I+  L   G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            D+A RV R MI +    D   YT +I  FC+ G ++ A+K++  M+ +R +P    ++ 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +I GLC  G + ++  +   M  +G+ P   T+  L     K G  +    L  +M
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQM 176


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 183/377 (48%), Gaps = 5/377 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + SV  Y  ++E++ K   +    ++++ MR K    N+ T+ +I+    R  +V++A  
Sbjct: 208 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 267

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             N +  YG   +  ++  +L  LC +K     +E+F + M+   +P+  T+ +L+  + 
Sbjct: 268 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFC 327

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   + RA ++  +M   GC  +     I+++ +CK GRVD+A   + +M S  C P + 
Sbjct: 328 RGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTI 387

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++       R EDA +   EM +     +   +N  I   C+    +    +++ M
Sbjct: 388 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 447

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
           +  G   N  T N ++NG   +G  D A  +F  M   C+ +  TYT ++   C    L+
Sbjct: 448 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNTITYTTLLTGLCNAERLD 505

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++   M  K   P++ TF+VL++  C KG++ ++  L+E M+E G  P+  T+  L 
Sbjct: 506 AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 565

Query: 452 KLLIKE-GREDVLKFLQ 467
             + K+   E+ L+ L 
Sbjct: 566 DGITKDCNSEEALELLH 582



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 122 AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           A R+   ++V  +  ++  Y R  +++ A      M    V  +   +  ++  LC    
Sbjct: 135 AERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGR 191

Query: 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           V +A  + D M  R   P   TY++LLE   K     +A E+  EM   GC P+IVTY +
Sbjct: 192 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNV 251

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ +C+ GRVD+A   +  + S   +P +  Y+ ++       R ED  + F EM +  
Sbjct: 252 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 311

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
            + +   ++ L+  FC+    +   +VL+ M+  G A N+  CNI++N +  +G  D+A+
Sbjct: 312 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 371

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +    M    C  D  +YT ++K  C+    E A ++ K M  K   P+  TF+  I  L
Sbjct: 372 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 431

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           C KG++  + +L+E M E G   +  T+  L      +GR D
Sbjct: 432 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 473



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 170/343 (49%), Gaps = 5/343 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++    +     +A+   + M+  G T N+  +N +++ +C+   V  A+E  
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +    F PD+ +Y+ +L+G           E+F EM++  C P+ VT+ ++V   C+ 
Sbjct: 270 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 329

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V+ A+ +++ M    C   + + +++++T   + R++DA      M   G   D   Y
Sbjct: 330 GMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISY 389

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             ++   C+A ++++   +LK+M  K   PN  T N  +  L  +G  ++A  +  +M +
Sbjct: 390 TTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE 449

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             CE +  TY  ++  FC  G ++ A +++  M  K   P+  T++ L+ GLC+   +  
Sbjct: 450 HGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDA 506

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  LL +M++K   P+  TF  L     ++G  D    L E+M
Sbjct: 507 AAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 549



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 156/336 (46%), Gaps = 3/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R   R  +  +A       ++ G   ++ A+N L++  C+   +  A+ +   M    
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--V 172

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ TY+ ++ G      +  A  +  +M+  GC P +VTY ++++ +CK+    +A+ 
Sbjct: 173 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAME 232

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M +  C P    Y+V+++    E R++DA +    +   G   D   Y  ++   C
Sbjct: 233 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 292

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
            A ++++V  +  +M  K   PN  T ++++      G  + A +V  +M    C A+  
Sbjct: 293 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 352

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              ++I   C+ G ++ AF+    M      P   +++ ++ GLC      D+  LL++M
Sbjct: 353 LCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEM 412

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           + K   P+  TF     +L ++G  +    L E+M+
Sbjct: 413 VRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 448



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 173/372 (46%), Gaps = 6/372 (1%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
           ++    +Y ++++ L   ++++ + +L   M  K  M N  TF +++R + R   VE A+
Sbjct: 277 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAI 336

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
                M  +G   N    N +++ +CK   V  A +  + M      PD+ +Y+ +L+G 
Sbjct: 337 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 396

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +      A+E+ +EMV   C P+ VT+   + +LC+ G +++A  +++ M    C    
Sbjct: 397 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 456

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ LV+ + V+ R++ A++ F  M       +   Y  L+   C A +      +L +
Sbjct: 457 VTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAE 513

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M  K  APN  T N++++    +G  DEA  +  +M++  C  +  TY  ++    +   
Sbjct: 514 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCN 573

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            E+A ++   +      P + T+S +I  L  +  V ++  +   + + G+RP    + K
Sbjct: 574 SEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNK 633

Query: 450 LRKLLIKEGRED 461
           +   L K    D
Sbjct: 634 ILLALCKRCNTD 645



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 12/290 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM----LNVETF-CIIMRKYARVQKVEEAVYT 153
           +Y ++++ L +  +++   +L+  M  K      +   TF CI+ +K      +E+A   
Sbjct: 388 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK----GLIEQATML 443

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
              M ++G   N+  +N L++  C    V  A E+F  M  +  P++ TY+ LL G    
Sbjct: 444 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--PNTITYTTLLTGLCNA 501

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+  EM+   C P++VT+ ++V   C+ G +DEA+ +V+ M    C P    Y
Sbjct: 502 ERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITY 561

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+     +   E+A++    +  NG+  D+  Y+++IG   + ++ +   ++   +  
Sbjct: 562 NTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQD 621

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIK 382
            G+ P +   N IL  L  R  TD A   F  M+   C  +  TY  +I+
Sbjct: 622 LGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 671



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  ++ + L+       R  DA       E++G   DV  YN L+  +C+  +     R+
Sbjct: 107 PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 166

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           +  M    VAP++ T   I+ GL  RG   EA  +   M+ + C+    TYT++++  C+
Sbjct: 167 IASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 223

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
                +A +V   M+ K   P++ T++V+ING+C +G V D+   L  +   G +P   +
Sbjct: 224 STGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS 283

Query: 447 FGKLRKLLIKEGR-EDVLKFLQEKM 470
           +  + K L    R EDV +   E M
Sbjct: 284 YTTVLKGLCAAKRWEDVEELFAEMM 308



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 125/321 (38%), Gaps = 69/321 (21%)

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------------ 264
           PRA  +       G  PD+     ++  LC+ GR  +A  ++++ + +            
Sbjct: 91  PRAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTL 150

Query: 265 ---VCR-----------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
               CR                 P ++ Y+ ++       R+ +A+    +M   G    
Sbjct: 151 VAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPS 210

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  Y  L+ A CK+  F     VL +M +KG  PN  T N+I+NG+   G  D+A     
Sbjct: 211 VVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN 270

Query: 365 R------------------------------------MIKLCEADADTYTMMIKMFCQGG 388
           R                                    M K C  +  T+ M+++ FC+GG
Sbjct: 271 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 330

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +E+A +V + M       +    +++IN +C +G V D+   L +M   G  P   ++ 
Sbjct: 331 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 390

Query: 449 KLRKLLIKEGR-EDVLKFLQE 468
            + K L +  R ED  + L+E
Sbjct: 391 TVLKGLCRAERWEDAKELLKE 411



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 3/249 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
            +   E ++  Y++++       +     +L  +M  K   N  T+  ++      ++++
Sbjct: 448 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKP--NTITYTTLLTGLCNAERLD 505

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A      M +     N+  FN L+S  C+   + +A E+ + M +    P+  TY+ LL
Sbjct: 506 AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 565

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G  KD N   A E+   +V  G +PDIVTY  ++ VL +  RV+EA+ +   +     R
Sbjct: 566 DGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR 625

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P + IY+ ++         + A+D F  M  NG + +   Y  LI      +  K    +
Sbjct: 626 PKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDL 685

Query: 328 LKDMNSKGV 336
           L+++ S+GV
Sbjct: 686 LRELCSRGV 694



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y +++  L    +     +L+  M  K    NV TF +++  + +   ++EA+     M 
Sbjct: 491 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 550

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           ++G T NL  +N LL  + K  N  +A E+   +    + PD  TYS ++    ++  + 
Sbjct: 551 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 610

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++F  + D G  P  V Y  ++  LCK    D A+     M S  C P    Y  L+
Sbjct: 611 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 670

Query: 278 HTYGVENRIEDAVDTFLEMEKNGIL 302
                E+ +++  D   E+   G+L
Sbjct: 671 EGLANEDFLKETRDLLRELCSRGVL 695


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 196/445 (44%), Gaps = 42/445 (9%)

Query: 20  RRYNSSEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           +++  + PS   LD     I KI    P    + AL+   ++V   +V +VL K      
Sbjct: 49  QKFPRNNPSVRTLDERFIRILKIFKWGPDA--EKALEVLKLKVDHRLVREVL-KIDVEIH 105

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           +   FFKWA K++N+EH    Y ++I  L +      MW  +  M       V + C+I 
Sbjct: 106 VKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEM-------VRSTCVI- 157

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
                                       A  + ++  L K+K V KA  IF  +K R   
Sbjct: 158 --------------------------GPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCK 191

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALG 256
           P S TY+ ++    ++ +  +  E++ EM + G C PD VTY  ++    K GR D A+ 
Sbjct: 192 PTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAIS 251

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +   M      PT+ IY+ ++  Y    R+E A+    EM++ G    V  Y  LI    
Sbjct: 252 LFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVG 311

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           KA K +  Y +  +M  +G  P+    N ++N L   G   +A ++F  M  L C  +  
Sbjct: 312 KAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVV 371

Query: 376 TYTMMIK-MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           TY  +IK +F       +AF  ++ MK    +PS  T+S+LI+G C    V  + +LLE+
Sbjct: 372 TYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 431

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR 459
           M EKG  P    +  L   L K  R
Sbjct: 432 MDEKGFAPCPAAYCSLINALGKAKR 456



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 185/411 (45%), Gaps = 41/411 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNV 156
            Y+SMI  L +   ++ + +L N M  +   + +  T+  ++  + ++ + + A+  F+ 
Sbjct: 196 TYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDE 255

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
           M++ G+      +  +L    K   V KA  +   MK++    +  TY+ L++G GK   
Sbjct: 256 MKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGK 315

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  IF  M+  GC PD+V    ++++L KAGR+ +A+ + + M+S  C P    Y+ 
Sbjct: 316 VEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNT 375

Query: 276 LVHT-YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           ++   +  + R  +A   + +M++NG++     Y+ LI  FCK N+ +    +L++M+ K
Sbjct: 376 VIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 435

Query: 335 GVAP-----------------------------------NSRTCNIILNGLIGRGETDEA 359
           G AP                                   ++R   +++  L   G   EA
Sbjct: 436 GFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEA 495

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +F  M KL C  D   Y  ++    + G  ++A  + + M+     P +++ ++++NG
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
               G    +  +   M    I+P   ++  +   L + G  E+  K ++E
Sbjct: 556 FARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKE 606



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF---DCMKDR-FI 197
            +  ++ +A+  F  M+    T N+  +N ++ AL +SK   +A E F   + MK+   +
Sbjct: 346 GKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESK--ARASEAFLWYEKMKENGVV 403

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P S TYSIL++G+ K   + +A  +  EM + G  P    Y  +++ L KA R + A  +
Sbjct: 404 PSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANEL 463

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + +       ++ +Y+V++   G   R+ +AVD F EM+K G   DV  YNAL+    +
Sbjct: 464 FQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVR 523

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
                  + +L+ M   G  P+  + NIILNG    G    A  +F RM     + D  +
Sbjct: 524 VGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVS 583

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           Y  ++    + G  E+A K+ K M  K F   + T+S ++  +
Sbjct: 584 YNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV 626



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  +VE+A+     M + G     AA+  L++AL K+K    A E+F  +
Sbjct: 408 TYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQEL 467

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++      ++ Y+++++  GK   L  A ++F EM   GCNPD+  Y  ++  + + G  
Sbjct: 468 RENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMT 527

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEA  ++++M+   C P    ++++++ +      + A++ F  M+ + I  DV  YN +
Sbjct: 528 DEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTV 587

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           +G   +A  F+   +++K+MNSKG   +  T + IL  +   G+ DE +
Sbjct: 588 LGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV---GKIDEDH 633


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 6/367 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV-EEAVYTF 154
           VRAY +++ +L++  +Y+   +L   +R + +   + T+ +++  Y R+ +     V   
Sbjct: 174 VRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALL 233

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           + M+  GV  +    + +++A C+   V +A   F+ +K R   P   TY+ LL+ +GK 
Sbjct: 234 DEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKA 293

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  +  EM   GC PD VTY  +     +AG  +EA   + +M S    P +F Y
Sbjct: 294 GNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTY 353

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  YG   ++++A+  F +M+K G + +V  YN ++G   K ++F  +  +L +M+ 
Sbjct: 354 NTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSR 413

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELE 391
            G  PN  T N +L     RG  D   RV   M + C  E   DTY  +I  + + G   
Sbjct: 414 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM-RSCGVELSRDTYNTLIAAYGRCGSRT 472

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            AFK++  M    F P + T++ L+N L  +G  S +  ++  M  KG +P+ +++  L 
Sbjct: 473 NAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLL 532

Query: 452 KLLIKEG 458
           +   K G
Sbjct: 533 QCYAKGG 539



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 139/312 (44%), Gaps = 36/312 (11%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK-DPNLPR 218
           G   ++ A+  +L AL ++    +A E+F  ++ + + P   TY+++L+ +G+   + PR
Sbjct: 169 GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPR 228

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
              +  EM   G  PD  T   ++   C+ G VDEA+   + + +    P    Y+ L+ 
Sbjct: 229 IVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQ 288

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +G      +A+    EME+NG   D   YN L G + +A  F+   R L  M SKG+ P
Sbjct: 289 VFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLP 348

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
           N                                  A TY  ++  +   G++++A  ++ 
Sbjct: 349 N----------------------------------AFTYNTVMTAYGNVGKVDEALALFD 374

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            MK   F+P+++T+++++  L  K   +    +L +M   G  P+  T+  +  +  K G
Sbjct: 375 QMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG 434

Query: 459 REDVLKFLQEKM 470
            ED +  + E M
Sbjct: 435 MEDYVTRVLEGM 446



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 176/423 (41%), Gaps = 41/423 (9%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNY-EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           +L+ F  AG          E +QN  +     Y+ +  + A+   ++     ++ M +K 
Sbjct: 286 LLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKG 345

Query: 128 ML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +L N  T+  +M  Y  V KV+EA+  F+ M+K G   N+  +N +L  L K        
Sbjct: 346 LLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVML 405

Query: 187 EIFD------CMKDRFIPDS------------------------------KTYSILLEGW 210
           E+        C  +R   ++                               TY+ L+  +
Sbjct: 406 EMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAY 465

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           G+  +   A +++ EM   G  P I TY  +++VL + G    A  IV  M +   +P  
Sbjct: 466 GRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNE 525

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLK 329
             YS+L+  Y     +        E+  +G +     +   L+ A  K  +   +    +
Sbjct: 526 QSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQ 585

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
           ++ ++G  P+    N +L+     G   +A  VF  + +     D  TY  ++ M+ +  
Sbjct: 586 EVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCS 645

Query: 389 ELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           E  +A K+   +K  + + P + +++ +ING C +G+V ++  +L +M+  G+ P   T+
Sbjct: 646 ESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTY 705

Query: 448 GKL 450
             L
Sbjct: 706 HTL 708



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 126/304 (41%), Gaps = 39/304 (12%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+ +T+  ++  Y R      A   +N M   G T  +  +N LL+ L +  +   AQ I
Sbjct: 453 LSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSI 512

Query: 189 FDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREI------------------------- 222
              M+ + F P+ ++YS+LL+ + K  N+     I                         
Sbjct: 513 VSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANF 572

Query: 223 -----------FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                      F+E+   G NPD+V +  M+ +  K G   +A  +  S+  +   P   
Sbjct: 573 KCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLI 632

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKD 330
            Y+ L+  Y   +   +A     +++ +  +  DV  YN +I  FCK    K   RVL +
Sbjct: 633 TYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSE 692

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGE 389
           M + G+AP + T + ++ G        EA  V   M++      + TY  +++ +C+   
Sbjct: 693 MVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKR 752

Query: 390 LEKA 393
            E+A
Sbjct: 753 FEEA 756



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 40/315 (12%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G+ +S +    ++  +   G+    F  + E     +   +  Y++++  L++   +   
Sbjct: 450 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTA 509

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYAR------VQKVEEAVY----------------- 152
             +V+ MRTK    N +++ ++++ YA+      +  +E  VY                 
Sbjct: 510 QSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVI 569

Query: 153 -------------TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
                         F  ++  G   +L  FN +LS   K+    KA E+FD +K   + P
Sbjct: 570 ANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSP 629

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           D  TY+ L++ + K      A +I  ++       PD+V+Y  +++  CK G V EA  +
Sbjct: 630 DLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRV 689

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M +    P +  Y  LV  Y       +A +    M ++G+      Y  ++ ++C+
Sbjct: 690 LSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCR 749

Query: 318 ANKFKNVYRVLKDMN 332
           A +F+     L +++
Sbjct: 750 AKRFEEARGFLSEVS 764



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           K + Y   +  ++SM+   AK   Y    ++ +++ R+    ++ T+  +M  YA+  + 
Sbjct: 588 KARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSES 647

Query: 148 EEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSI 205
            EA    N ++    +  ++ ++N +++  CK   V++AQ +   M  D   P + TY  
Sbjct: 648 WEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHT 707

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           L+ G+        ARE+   MV  G  P  +TY  +V+  C+A R +EA G +  +  T
Sbjct: 708 LVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSET 766


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 170/339 (50%), Gaps = 3/339 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F ++M  + +V  V  A   F+ + K G+   + +FN L+S  CK+  V +   +   M+
Sbjct: 145 FNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVME 204

Query: 194 -DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            +R  PD  T+S L+ G  K+  L     +F EM   G  P+ VT+ +++D  CK G+VD
Sbjct: 205 SERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVD 264

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            AL   + M +   RP    Y+ L++       +++A     EM  +G+  D   +  LI
Sbjct: 265 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLI 324

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-E 371
              CK    ++   + + M  +G+  +     ++++GL   G   +A R+ R M+    +
Sbjct: 325 DGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFK 384

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYTM++  FC+ G +   FK+ K M+    +P + T++ L+NGLC +G V ++ +L
Sbjct: 385 PDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKML 444

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQEK 469
           L+ M+  G+ P+  T+  L +   K G   DV  F  EK
Sbjct: 445 LDAMLNVGVAPNDITYNILLEGHSKHGSSVDVDIFNSEK 483



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 4/338 (1%)

Query: 137 IMRKYARVQKVE-EAVYTFNV-MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
           ++R+  R++ VE E  + F + +   G   N   FN L+   CK   V  A+ +FD +  
Sbjct: 111 LLRRVVRLRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPK 170

Query: 195 RFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           R + P   +++ L+ G  K   +     +   M      PD+ T+  +++ LCK GR+DE
Sbjct: 171 RGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDE 230

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
              +   M      P    ++VL+       +++ A+  F  M   G+  D+  YNALI 
Sbjct: 231 GSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALIN 290

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
             CK    K   R++ +M++ G+ P+  T   +++G    G+ + A  + RRM++   E 
Sbjct: 291 GLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIEL 350

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D   +T++I   C+ G +  A ++ + M    F P   T++++++  C KG V     LL
Sbjct: 351 DDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLL 410

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++M   G  P   T+  L   L K+G+    K L + M
Sbjct: 411 KEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAM 448



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 2/262 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  + ++I  L K  +      L + M  K ++ N  TF +++    +  KV+ A+  F 
Sbjct: 212 VFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQ 271

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
           +M   GV  +L  +N L++ LCK  ++++A+ + + M    + PD  T++ L++G  K  
Sbjct: 272 MMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYG 331

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A EI R MV+ G   D V + +++  LC+ GRV +A  +++ M S   +P    Y+
Sbjct: 332 DMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYT 391

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           ++V  +  +  +        EM+ +G +  V  YNAL+   CK  + KN   +L  M + 
Sbjct: 392 MVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNV 451

Query: 335 GVAPNSRTCNIILNGLIGRGET 356
           GVAPN  T NI+L G    G +
Sbjct: 452 GVAPNDITYNILLEGHSKHGSS 473



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 148/325 (45%), Gaps = 6/325 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V +++++I    K    +  + L   M ++R+  +V TF  ++    +  +++E    F
Sbjct: 176 TVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLF 235

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M   G+  N   F  L+   CK   V  A + F  M  + + PD  TY+ L+ G  K 
Sbjct: 236 DEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKV 295

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  AR +  EM  +G  PD +T+  ++D  CK G ++ AL I + M           +
Sbjct: 296 GDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAF 355

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +VL+     + R+ DA     +M   G   D   Y  ++  FCK       +++LK+M S
Sbjct: 356 TVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQS 415

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEK 392
            G  P   T N ++NGL  +G+   A  +   M+ +  A  D TY ++++   + G    
Sbjct: 416 DGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGS--- 472

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLIN 417
           +  V  +   K  +    +++ L+N
Sbjct: 473 SVDVDIFNSEKGLVKDYASYTALVN 497



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 2/258 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L R+   + E++D+G  P+   + +++   CK G V  A  +   +     RPT   ++ 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+        +E+       ME   +  DV  ++ALI   CK  +      +  +M  KG
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           + PN  T  ++++G    G+ D A + F+ M+ +    D  TY  +I   C+ G+L++A 
Sbjct: 243 LVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 302

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M      P   TF+ LI+G C  G +  +  +   M+E+GI      F  L   L
Sbjct: 303 RLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGL 362

Query: 455 IKEGR-EDVLKFLQEKMN 471
            ++GR  D  + L++ ++
Sbjct: 363 CRDGRVHDAERMLRDMLS 380



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 13/236 (5%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-----RTKRMLNVETFCIIMRKYARVQ 145
           Q     +  Y+++I  L K+   +    LVN M     R  R+    TF  ++    +  
Sbjct: 276 QGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRI----TFTTLIDGCCKYG 331

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYS 204
            +E A+     M + G+  +  AF  L+S LC+   V  A+ +  D +   F PD  TY+
Sbjct: 332 DMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYT 391

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ++++ + K  N+    ++ +EM   G  P +VTY  +++ LCK G+V  A  ++ +M + 
Sbjct: 392 MVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNV 451

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
              P    Y++L+  +   ++   +VD  +   + G++ D A Y AL+    K +K
Sbjct: 452 GVAPNDITYNILLEGH---SKHGSSVDVDIFNSEKGLVKDYASYTALVNESSKTSK 504


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 177/357 (49%), Gaps = 5/357 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
           +Y+++I+SL    + Q   D++  M        +V ++ +++       ++ +A   FN 
Sbjct: 238 SYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNE 297

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M + GV  N+  +N ++ ALCK++ + KA+ +   M D  I PD  TY+ ++ G+     
Sbjct: 298 MVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGR 357

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A ++F+EM   G  PDIVT+  ++D LCK  R  EA  I  S+ +   +P    YS+
Sbjct: 358 WKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSI 417

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+H Y  E R  D  + F  M  NGI+AD   +N LI A  K         +  +M  +G
Sbjct: 418 LLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQG 477

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           V+PN  T   ++  L   G   +A     +MI +  + +   Y  +I+ FC  G+L KA 
Sbjct: 478 VSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAK 537

Query: 395 KVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++   M  +    P++  FS +I+ LC++G V ++  +   +I  G RP   TF  L
Sbjct: 538 ELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSL 594



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 179/385 (46%), Gaps = 4/385 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVE 148
           Q+    +V  Y+S++ +L K R       ++  M    +   E T+  ++  Y+ + + +
Sbjct: 300 QKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWK 359

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           EA   F  M + G+  ++  FN L+ +LCK K  ++A EIF  +  +   PD  +YSILL
Sbjct: 360 EAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILL 419

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+  +        +F  M D G   D   + I+++   K G +DEAL I   M      
Sbjct: 420 HGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVS 479

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ ++       R+ DA++   +M   G+  +  +Y++LI  FC          +
Sbjct: 480 PNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKEL 539

Query: 328 LKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFC 385
           + +M  +G+  PN    + I++ L   G    A  VF  +I + +  D  T+  +I  +C
Sbjct: 540 VSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYC 599

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G+++KAF V   M      P + T+S LING    G + D  +L  +M+ K ++P+  
Sbjct: 600 LVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTV 659

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           T+  +   L + GR    K +  +M
Sbjct: 660 TYSLVLDGLFRAGRTSAAKKMFHEM 684



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 174/391 (44%), Gaps = 44/391 (11%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L V T+ I+M    R ++ +     F  + + G+  +    N  L  LC +K   +A  +
Sbjct: 163 LTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSM 222

Query: 189 -------FDCMKDRF-------------------------------IPDSKTYSILLEGW 210
                    C+ D F                                PD  +Y++++ G 
Sbjct: 223 LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGL 282

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             +  + +A  +F EMV  G  P++VTY  +V  LCKA  +D+A  +++ M     +P  
Sbjct: 283 FMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE 342

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ ++H Y    R ++A   F EM + G++ D+  +N+L+ + CK  + K    +   
Sbjct: 343 VTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHS 402

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           + +KG  P+  + +I+L+G    G   +   +F  M      AD+  + ++I    + G 
Sbjct: 403 IATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGM 462

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +++A  ++  M+ +   P++ T++ +I  LC  G ++D+   L  MI  G++P+   +  
Sbjct: 463 MDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHS 522

Query: 450 LRKLLIKEGREDVLK---FLQEKMNLLVKEP 477
           L +     G  D++K    + E M+  +  P
Sbjct: 523 LIQGFCTHG--DLIKAKELVSEMMDQGIPRP 551



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 194/440 (44%), Gaps = 46/440 (10%)

Query: 63  PEIVE-----DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           P+IV      D L K + +   A  F   A K   ++  + +Y  ++   A   ++  M 
Sbjct: 375 PDIVTFNSLMDSLCKHKRSKEAAEIFHSIATK--GHKPDIISYSILLHGYATEGRFVDMN 432

Query: 118 DLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           +L ++M    ++ +   F I++  +A+   ++EA+  F  M+  GV+ N+  +  +++AL
Sbjct: 433 NLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG----- 230
           C+   +  A E    M    + P++  Y  L++G+    +L +A+E+  EM+D G     
Sbjct: 493 CRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPN 552

Query: 231 -----------CN--------------------PDIVTYGIMVDVLCKAGRVDEALGIVK 259
                      CN                    PDI T+  ++D  C  G++D+A G++ 
Sbjct: 553 ITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLD 612

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           +M S    P    YS L++ Y    RI+D +  F EM    +      Y+ ++    +A 
Sbjct: 613 AMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAG 672

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
           +     ++  +M   G A +  T  IIL GL     TDEA  +F ++  +  + +     
Sbjct: 673 RTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILN 732

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            MI    +    E+A  ++  +     +P+  T+ V+I  L  +G V ++ ++   M + 
Sbjct: 733 TMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKT 792

Query: 439 GIRPSGETFGKLRKLLIKEG 458
           G  PS      + ++L+++G
Sbjct: 793 GCAPSSRLLNDIIRMLLQKG 812



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK-------AQEIFD- 190
           R  A     E+A + F+ + +     +  A NG L+AL ++++          A  +F+ 
Sbjct: 91  RVRAGTFSTEDAHHLFDELLRQDTPVHGRALNGFLAALARARDSVACSDAPALAVALFNR 150

Query: 191 -CMKD---RFIPDS-KTYSILLEGW--GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
            C ++   R +P +  TY IL++     + P+L  A   F  ++  G   D +     + 
Sbjct: 151 ICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPA--FFARLLRAGLRTDGIVTNTFLK 208

Query: 244 VLCKAGRVDEALG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK-NGI 301
            LC A R DEAL  ++  M    C P +F Y+ ++ +    +R ++A+D  L M K +G 
Sbjct: 209 CLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGC 268

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             DV  Y  +I       +      +  +M  KGV PN  T N I++ L      D+A  
Sbjct: 269 SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAEL 328

Query: 362 VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           V R+M     + D  TYT MI  +   G  ++A K++K M  +  IP + TF+ L++ LC
Sbjct: 329 VLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLC 388

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
                 ++  +   +  KG +P   ++  L      EGR
Sbjct: 389 KHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGR 427



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 151/318 (47%), Gaps = 16/318 (5%)

Query: 100 YHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           + S+I SL    ++   Q +++LV  +  +   ++ TF  ++  Y  V K+++A    + 
Sbjct: 556 FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRP--DIFTFNSLIDGYCLVGKMDKAFGVLDA 613

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M   G   ++  ++ L++   KS  +     +F + +  R  P + TYS++L+G  +   
Sbjct: 614 MVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGR 673

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++F EM+++G    I TY I++  LC+    DEA+ +   + +   +    I + 
Sbjct: 674 TSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNT 733

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H      R E+A D F  +  +G++ + + Y  +I    K    +    +   M   G
Sbjct: 734 MIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTG 793

Query: 336 VAPNSRTCNIILNGLIGRGETDEA-YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
            AP+SR  N I+  L+ +GE  +A Y + +    +   +A T +++I +F   G      
Sbjct: 794 CAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKG------ 847

Query: 395 KVWKYMKLKRFIPSMHTF 412
              +Y +  +F+P+ + F
Sbjct: 848 ---RYREQIKFLPAKYQF 862


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 207/450 (46%), Gaps = 38/450 (8%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIES 106
           +VL   + +SG+  +      +++     G +   F  ++E K +    SV + +S++E 
Sbjct: 165 LVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEG 224

Query: 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
             K + +Q  + + N      + NV TF  ++    +  K+ EA   ++ +   G++ N+
Sbjct: 225 YLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNV 284

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
            ++N ++   C+  N+  A +++  M D  F P++ T++IL++G+ K  ++  A  IF  
Sbjct: 285 VSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHR 344

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEAL-----------------------GIVK--- 259
           M D    P   T GI++  LCKAGR  E                         G +K   
Sbjct: 345 MKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGN 404

Query: 260 -SMDSTVCR--------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
            ++ S V R        P++  Y+ L+  +   N I+ A+    +M++ G+  D+  Y  
Sbjct: 405 INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGT 464

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI  FCK    K+ + +L ++   G++PN    N ++ G       +EA  ++++M+ + 
Sbjct: 465 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 524

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              D  TYT +I    + G L  A  +   M  K  +P     +VLINGLC+KG   ++ 
Sbjct: 525 IPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENAR 584

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +LEDM  K + PS   +  L     KEG 
Sbjct: 585 KILEDMNGKNMIPSVLIYNTLIAGHFKEGN 614



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 37/326 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  TF I+M  Y +   +E A   F+ M+   +         ++  LCK+    + +++F
Sbjct: 318 NAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLF 377

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY---------- 238
           +  +   F+P    Y+ +++G+ K+ N+  A  ++REM + G  P  VTY          
Sbjct: 378 NKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKG 437

Query: 239 -------------------------GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                                    G ++D  CK   +  A  ++  +      P  FIY
Sbjct: 438 NNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIY 497

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++  +   N +E+A+D + +M   GI  D+  Y +LI    K+ +      +  +M S
Sbjct: 498 NSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLS 557

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG+ P+ R   +++NGL  +G+ + A ++   M  K        Y  +I    + G L++
Sbjct: 558 KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQE 617

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLING 418
           AF++   M  +  +P   T+ +L+NG
Sbjct: 618 AFRLHDEMLDRGLVPDNITYDILVNG 643



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 149/329 (45%), Gaps = 1/329 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           ++   I++    R     EA    N M   GVT +    + +L A  K  N+ +A++ F 
Sbjct: 5   IQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFL 64

Query: 191 CMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             K R +  D + YSI +      PN   A  + REM   G  P   T+  ++    K G
Sbjct: 65  QAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEG 124

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            V EAL +   M +        + + L+  Y ++  +  A+    E+ ++G++ +   Y+
Sbjct: 125 NVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYS 184

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI   CK    +  +    +M +KG+  +  + N IL G +       A+ +F   ++ 
Sbjct: 185 VLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALES 244

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
             A+  T+  ++   C+ G++ +A  +W  +  K   P++ +++ +I G C K  ++ +C
Sbjct: 245 GLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAAC 304

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            + ++M++ G  P+  TF  L     K+G
Sbjct: 305 KVYKEMLDNGFTPNAVTFTILMDGYFKKG 333



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S   Y S+I+   K     +   L+N M+ K + ++++ +  ++  + + + ++ A    
Sbjct: 423 STVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELL 482

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
           N ++  G++ N   +N +++      NV +A +++  M +  IP D KTY+ L++G  K 
Sbjct: 483 NELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKS 542

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A +I  EM+  G  PD   + ++++ LC  G+ + A  I++ M+     P+  IY
Sbjct: 543 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIY 602

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + L+  +  E  +++A     EM   G++ D   Y+ L+  
Sbjct: 603 NTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 643



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 35/281 (12%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P  +  +ILL    +      ARE+  +M+  G   D  T  +M+    K G + EA   
Sbjct: 3   PSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQH 62

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
                +         YS+ VH   ++     A+    EM   G +     + ++I A  K
Sbjct: 63  FLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVK 122

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
                   R+  DM + G + N      ++ G   +G    A  +   + +     +  T
Sbjct: 123 EGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVT 182

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH-------------------------- 410
           Y+++I   C+ G +EKAF+ +  MK K    S++                          
Sbjct: 183 YSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDAL 242

Query: 411 --------TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                   TF+ L++ LC +G ++++C L +++I KGI P+
Sbjct: 243 ESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 283


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 200/426 (46%), Gaps = 6/426 (1%)

Query: 58  GIRVSPEIVEDVLEKF-RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G  V+  I+  VL+   RN G            +++    + +Y+++I  L K ++ +  
Sbjct: 139 GFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEA 198

Query: 117 WDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
             L+  M       N  T   +M    +  +++EA+     M+K G   ++  +  L+S 
Sbjct: 199 VGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISG 258

Query: 176 LCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            C + N+ + +E+FD M  + I  +  TYS L+ G  +      A  +   M + G +PD
Sbjct: 259 FCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD 318

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTY  ++D LCK GR   A+ ++  M      P++  Y+VL+     E  + DA     
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 378

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM--NSKGVAPNSRTCNIILNGLIG 352
            M + G  ADV  YN L+   C   K     ++   M  N   + PN  T N+++ GL  
Sbjct: 379 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCK 438

Query: 353 RGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G   +A ++ R+M+K     +  TY M++    + G++++A ++WK +    F+P+  T
Sbjct: 439 EGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFT 498

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +S+LI+G C   +++ +  L  +M   G+ P+   +  L   L KEG  +  K L ++M 
Sbjct: 499 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 558

Query: 472 LLVKEP 477
               EP
Sbjct: 559 NANCEP 564



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 186/390 (47%), Gaps = 7/390 (1%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145
           A K++ ++  V  Y ++I             +L + M  K +  NV T+  ++    R+ 
Sbjct: 239 AMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLG 298

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           + +EA    N M ++G+  ++  + GL+  LCK      A ++ + M ++   P + TY+
Sbjct: 299 QWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 358

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DS 263
           +LL G  K+  +  A +I R M++ G   D+VTY  ++  LC  G+VDEAL +  SM D+
Sbjct: 359 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418

Query: 264 TVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
             C  P  F +++L+     E R+  AV    +M K G   ++  YN L+G   KA K K
Sbjct: 419 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 478

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF--RRMIKLCEADADTYTMM 380
               + K +   G  PNS T +I+++G       + A  +F   R   L  A  D  T+M
Sbjct: 479 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 538

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             + C+ G LE+A  +++ M      P + +F+ +I+G    G       L   M+E G+
Sbjct: 539 ASL-CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 597

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           RP   TF  L   L K G  D  K   E+M
Sbjct: 598 RPDALTFSTLINRLSKLGELDEAKSALERM 627



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 167/361 (46%), Gaps = 36/361 (9%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           ++++LA+ R Y + + +   M    +L +  +   ++  +A  QK +       ++ K G
Sbjct: 80  LVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRG 139

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
            T N+   N +L  LC++  V +A  +                                 
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLI-------------------------------- 167

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
             REM     +PDIV+Y  +++ LCKA ++ EA+G++  M++  C P S   + L+    
Sbjct: 168 --REMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLC 225

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            + R+++A++    M+K G  ADV +Y  LI  FC          +  +M  KG++ N  
Sbjct: 226 KDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVV 285

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T + +++GL   G+  EA  V   M +     D  TYT +I   C+ G    A  +   M
Sbjct: 286 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLM 345

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             K   PS  T++VL++GLC +G+V D+  +L  MIEKG +    T+  L K L  +G+ 
Sbjct: 346 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKV 405

Query: 461 D 461
           D
Sbjct: 406 D 406



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 169/359 (47%), Gaps = 7/359 (1%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVETFCIIMRKYARV 144
           A  +      V  Y  +I+ L K  +     DL+N M  + +   NV T+ +++    + 
Sbjct: 309 AMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNV-TYNVLLSGLCKE 367

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSK 201
             V +A     +M + G   ++  +N L+  LC    V +A ++F+ M D      P+  
Sbjct: 368 GLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVF 427

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           T+++L+ G  K+  L +A +I R+MV  G   ++VTY +++    KAG++ EA+ + K +
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 487

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                 P SF YS+L+  +     +  A   F EM  +G+   +  YN L+ + CK    
Sbjct: 488 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 547

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           +    + ++M +    P+  + N +++G +  G+      +  +M+++    DA T++ +
Sbjct: 548 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           I    + GEL++A    + M    F P    +  L+ GL  KG  ++   LL  M  KG
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 666



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 11/313 (3%)

Query: 119 LVNAMRTKRML-------NVETFCIIMRKYARVQKVEEAVYTFNVM--QKYGVTQNLAAF 169
           +++A +  RM+       +V T+  +M+      KV+EA+  FN M   +  +  N+  F
Sbjct: 370 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 429

Query: 170 NGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N L+  LCK   + KA +I   M K     +  TY++LL G  K   +  A E++++++D
Sbjct: 430 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD 489

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G  P+  TY I++D  CK   ++ A G+   M +    P  F Y+ L+ +   E  +E 
Sbjct: 490 LGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQ 549

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM       D+  +N +I    KA  F+ V  +   M   G+ P++ T + ++N
Sbjct: 550 AKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 609

Query: 349 GLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L   GE DEA     RM+      DA  Y  ++K     G+  +   +   M  K  + 
Sbjct: 610 RLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVL 669

Query: 408 SMHTFSVLINGLC 420
                S ++  LC
Sbjct: 670 DRKIVSTILTCLC 682



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
            KI++   +W  V  +    + N  T+ I++  + +++ +  A   F  M+ +G+   L 
Sbjct: 475 GKIKEAMELWKQV--LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALF 532

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +N L+++LCK  ++ +A+ +F  M +    PD  +++ +++G  K  +    +E+  +M
Sbjct: 533 DYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKM 592

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           V+ G  PD +T+  +++ L K G +DEA   ++ M ++   P + +Y  L+     +   
Sbjct: 593 VEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDT 652

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            + ++   +M   G + D  + + ++   C + +  +V  +L           S +CN +
Sbjct: 653 TEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNEL 712

Query: 347 L 347
           L
Sbjct: 713 L 713



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 1/183 (0%)

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   +  M    +L      +ALI  F  A K +  + V+  +  +G   N    NI+L 
Sbjct: 93  AFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLK 152

Query: 349 GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           GL   G   EA  + R M  K    D  +Y  +I   C+  +L++A  +   M+     P
Sbjct: 153 GLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFP 212

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           +  T + L++GLC  G + ++  LLE M +KG       +G L       G  D  K L 
Sbjct: 213 NSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELF 272

Query: 468 EKM 470
           ++M
Sbjct: 273 DEM 275



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 36/169 (21%)

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------------CEADAD-------- 375
           P+  TCN +++ L        A+ V+RRM  +              C ADA         
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 376 --------------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                            +++K  C+ G + +A  + + M  K   P + +++ LINGLC 
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
              + ++  LL +M   G  P+  T   L   L K+GR D    L E M
Sbjct: 192 AKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 240


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 191/433 (44%), Gaps = 7/433 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL+   +RV   +V +++ K      +   FF+WA K++NYEH    Y ++I  L  +
Sbjct: 78  EKALEVLMLRVDHWLVREIM-KTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVV 136

Query: 111 RQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
            QY  MW ++  M    +  V       ++R     + V +A+  F  ++         A
Sbjct: 137 EQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQA 196

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           +N ++  L       K  E+++ M  +    PD+ TYS L+  + K      A ++  EM
Sbjct: 197 YNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEM 256

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            D G  P    Y ++V +  K   V  AL + + M    CRP  F Y+ L+   G   RI
Sbjct: 257 KDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A   F EM++ G   D  + N +I    KA +  +  ++ ++M +    P+  T N I
Sbjct: 317 DEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTI 376

Query: 347 LNGLI-GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  L   +    E    F RM +      + TY+++I  FC+   +EKA  + + M  K 
Sbjct: 377 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKG 436

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           F P    +  LI+ L        +C L +++ E     S   +  + K L K GR D   
Sbjct: 437 FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAI 496

Query: 465 FLQEKMNLLVKEP 477
            + ++MN L   P
Sbjct: 497 NMFDEMNKLGCAP 509



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 199/410 (48%), Gaps = 10/410 (2%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  + +V+    NA  +  A   F +  K +  + + +AY+SMI  L    QY+ + +
Sbjct: 157 VTPTELSEVVRMLGNAKMVSKAIAIF-YQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHE 215

Query: 119 LVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M T+     +  T+  ++  + ++ + + A+   N M+  G+      +  L++  
Sbjct: 216 LYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALF 275

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  +V  A  +F+ M+ ++  PD  TY+ L+ G GK   +  A   F EM   GC PD 
Sbjct: 276 FKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDT 335

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           +    M++ L KAGR+D+A+ + + M +  C P+   Y+ ++   +  ++R  +    F 
Sbjct: 336 IVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 395

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            M+++GI      Y+ LI  FCK N+ +    +L++M+ KG  P       +++ L    
Sbjct: 396 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 355 ETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             D A  +F+ + + C  + +  Y +MIK   + G L+ A  ++  M      P ++ ++
Sbjct: 456 RYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 515

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
            L++GL   G++ ++   +  M E G  P   ++  +   L K+  ED++
Sbjct: 516 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQ--EDLI 563



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI---FDCMKDRFI- 197
            +  ++++A+  F  M       ++  +N ++ AL +SK+  +A E+   F+ MK+  I 
Sbjct: 346 GKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKS--RASEVPSWFERMKESGIS 403

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P S TYSIL++G+ K   + +A  +  EM + G  P    Y  ++D L KA R D A  +
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + +       +S +Y+V++   G   R++DA++ F EM K G   DV  YNAL+    +
Sbjct: 464 FQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
                     ++ M   G  P+  + NIILNGL  + +    +R F
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLIVQWRCF 569


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 202/440 (45%), Gaps = 44/440 (10%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIM 138
           A   F    +Q+ + H+   Y +++  LAK +++Q +  +++ M  +    +   F  +M
Sbjct: 76  ALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLM 135

Query: 139 RKYARVQKVEEAVYTF-------------------------------------NVMQKYG 161
           + ++++   E  V  F                                     N  +   
Sbjct: 136 KHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLN 195

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGKDPNLPRA 219
           +  N   FN L+   CK+ ++  A E+ + MK   +  P+  TYS L+ G      L  A
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEA 255

Query: 220 REIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
            E+F EMV      PD +TY  +++  C   +VD AL I++ M    C P  F YS L++
Sbjct: 256 IELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMN 315

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +  E R+E+A + F EM+  G+  D   Y  LI  FC+A +      +LKDM       
Sbjct: 316 GFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRA 375

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           ++ T N+IL GL   G  +EA  +  R+  +    +  +Y +++   C+ GEL+KA ++ 
Sbjct: 376 DTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLV 435

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  +  +P   T + L+  LC+ G V D+ + L  ++E G +P   ++  L +L+ +E
Sbjct: 436 GLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRE 495

Query: 458 GREDVLKFLQEKMNLLVKEP 477
            +  +L   +   +L+++EP
Sbjct: 496 RK--LLPAFELLDDLVIQEP 513



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 154/337 (45%), Gaps = 11/337 (3%)

Query: 143 RVQKVEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DS 200
           R    + A+  FN V ++ G + N A +  +L  L KSK  +    +   M         
Sbjct: 69  RETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHE 128

Query: 201 KTYSILLEGWGKDPNLPRAREIF---REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG- 256
             +  L++ + K     R  E+F   R +V     P +      +++L ++ +VD     
Sbjct: 129 GIFLNLMKHFSKLSLHERVVEMFDAIRPIVRE--KPSLKAISTCLNLLVESNQVDLTRKF 186

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAF 315
           ++ S  S    P + I+++LV  +     I+ A +   EM+K+ +   ++  Y+ LI   
Sbjct: 187 LLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGL 246

Query: 316 CKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           C + + K    + ++M SK  + P++ T N ++NG     + D A ++   M K  C  +
Sbjct: 247 CGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPN 306

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              Y+ ++  FC+ G LE+A +V+  MK     P    ++ LIN  C  G V ++  LL+
Sbjct: 307 VFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLK 366

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           DM E   R    TF  +   L +EGR +  + + E++
Sbjct: 367 DMRENKCRADTVTFNVILGGLCREGRFEEARGMLERL 403


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 200/455 (43%), Gaps = 43/455 (9%)

Query: 20  RRYNSSEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           +++  + PS   LD     I KI    P    + AL+   ++V   +V +VL K      
Sbjct: 49  QKFPRNNPSVRTLDERFIRILKIFKWGPDA--EKALEVLKLKVDHRLVREVL-KIDVEIH 105

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           +   FFKWA K++N+EH    Y ++I  L +      MW  +  M       V + C+I 
Sbjct: 106 VKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEM-------VRSTCVI- 157

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
                                       A  + ++  L K+K V KA  IF  +K R   
Sbjct: 158 --------------------------GPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCK 191

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALG 256
           P S TY+ ++    ++ +  +  E++ EM + G C PD VTY  ++    K GR D A+ 
Sbjct: 192 PTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAIS 251

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +   M      PT+ IY+ ++  Y    R+E A+    EM++ G    V  Y  LI    
Sbjct: 252 LFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVG 311

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
           KA K +  Y +  +M  +G  P+    N ++N L   G   +A ++F  M  L C  +  
Sbjct: 312 KAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVV 371

Query: 376 TYTMMIK-MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           TY  +IK +F       +AF  ++ MK    +PS  T+S+LI+G C    V  + +LLE+
Sbjct: 372 TYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 431

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           M EKG  P    +  L   L K  R E   +  QE
Sbjct: 432 MDEKGFAPCPAAYCSLINALGKAKRYEAANELFQE 466



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 185/411 (45%), Gaps = 41/411 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNV 156
            Y+SMI  L +   ++ + +L N M  +   + +  T+  ++  + ++ + + A+  F+ 
Sbjct: 196 TYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDE 255

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
           M++ G+      +  +L    K   V KA  +   MK++    +  TY+ L++G GK   
Sbjct: 256 MKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGK 315

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  IF  M+  GC PD+V    ++++L KAGR+ +A+ + + M+S  C P    Y+ 
Sbjct: 316 VEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNT 375

Query: 276 LVHT-YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           ++   +  + R  +A   + +M++NG++     Y+ LI  FCK N+ +    +L++M+ K
Sbjct: 376 VIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 435

Query: 335 GVAP-----------------------------------NSRTCNIILNGLIGRGETDEA 359
           G AP                                   ++R   +++  L   G   EA
Sbjct: 436 GFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEA 495

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +F  M KL C  D   Y  ++    + G  ++A  + + M+     P +++ ++++NG
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
               G    +  +   M    I+P   ++  +   L + G  E+  K ++E
Sbjct: 556 FARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKE 606



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 8/337 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDL-VNAMRTKRMLNVETFCIIMRKYARVQKV 147
           K++    +V  Y  +I+ + K  + +  + + +N ++     +V     ++    +  ++
Sbjct: 292 KEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRL 351

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF---DCMKDR-FIPDSKTY 203
            +A+  F  M+    T N+  +N ++ AL +SK   +A E F   + MK+   +P S TY
Sbjct: 352 ADAIKLFEEMESLQCTPNVVTYNTVIKALFESK--ARASEAFLWYEKMKENGVVPSSFTY 409

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           SIL++G+ K   + +A  +  EM + G  P    Y  +++ L KA R + A  + + +  
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRE 469

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
                ++ +Y+V++   G   R+ +AVD F EM+K G   DV  YNAL+    +      
Sbjct: 470 NCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDE 529

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
            + +L+ M   G  P+  + NIILNG    G    A  +F RM     + D  +Y  ++ 
Sbjct: 530 AHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLG 589

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
              + G  E+A K+ K M  K F   + T+S ++  +
Sbjct: 590 CLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV 626



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  +VE+A+     M + G     AA+  L++AL K+K    A E+F  +
Sbjct: 408 TYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQEL 467

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++      ++ Y+++++  GK   L  A ++F EM   GCNPD+  Y  ++  + + G  
Sbjct: 468 RENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMT 527

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEA  ++++M+   C P    ++++++ +      + A++ F  M+ + I  DV  YN +
Sbjct: 528 DEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTV 587

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           +G   +A  F+   +++K+MNSKG   +  T + IL  +   G+ DE +
Sbjct: 588 LGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV---GKIDEDH 633


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 9/381 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ S+ +++ Y  +  L   M +  +  N  T  I++  +  + ++  A    
Sbjct: 53  SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVL 112

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             + K G   + A F  L+  LC    + +A ++FD M  + F PD  TY  L+ G  K 
Sbjct: 113 GDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKV 172

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A    R M    C P +V Y  ++D LCK  ++ EAL +   M +    P +F Y
Sbjct: 173 GNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTY 232

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+H   +    ++A+  F  M    I+ D   +N L+ A CK       + V+  M  
Sbjct: 233 SSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQ 292

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
             + P+  T N +++G   R E  +   VF  M+ K C     +YT +I  +C+   ++K
Sbjct: 293 SDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDK 352

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +++ M  +  IP   T++ LI+GLC  G + D+  L  +M+  G  P   T+  L  
Sbjct: 353 AMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFD 412

Query: 453 LLIKEGREDVLKFLQEKMNLL 473
            L K  R      L E M LL
Sbjct: 413 YLCKNHR------LAEAMVLL 427



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 167/349 (47%), Gaps = 3/349 (0%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R +   ++  F  ++    R++     +  +  M  +G+  N    N L+++ C    +
Sbjct: 46  LRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRL 105

Query: 183 RKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +  D +K  + P + T++ L+ G   +  +  A ++F +M   G  PD++TYG +
Sbjct: 106 GFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTL 165

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           ++ LCK G    A+  ++SM+   CRPT  +YS ++ +   + ++ +A+  F +M   GI
Sbjct: 166 INGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGI 225

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             +   Y++LI   C    +K   R+   M  + + P+  T N +++ L   G   +A+ 
Sbjct: 226 SPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHY 285

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           V   MI+   + D  TY  ++   C   E+ K   V+  M  K  +PS+ +++ LING C
Sbjct: 286 VVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYC 345

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
              I+  +  L E+M ++G+ P   T+  L   L   GR  D +    E
Sbjct: 346 KIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHE 394



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 179/384 (46%), Gaps = 3/384 (0%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
           F  + +Q+N   +V  Y ++I+SL K RQ      L + M  K +  N  T+  ++    
Sbjct: 181 FLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLC 240

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSK 201
            +   +EA+  F  M    +  +   FN L+ ALCK   V KA  + D M +    PD  
Sbjct: 241 ILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVV 300

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY+ L++G      + +   +F  MV  GC P +++Y  +++  CK   +D+A+G+ + M
Sbjct: 301 TYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEM 360

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                 P +  Y+ L+H      R+ DA+  F EM   G + D+  Y  L    CK ++ 
Sbjct: 361 SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRL 420

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMM 380
                +LK +    + P+    +I+++G+   GE + A  +F ++  K    D  TYT+M
Sbjct: 421 AEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIM 480

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   CQ G L +A K++  M      P+  T++++  G         +  L ++M+ +G 
Sbjct: 481 INGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGF 540

Query: 441 RPSGETFGKLRKLLIKEGREDVLK 464
                T   L ++L  +G +  +K
Sbjct: 541 SIDVSTTTLLVEMLSDDGLDQSVK 564



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/466 (22%), Positives = 210/466 (45%), Gaps = 14/466 (3%)

Query: 5   YHSRN---KMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSG 58
           +HS++     I   +S   R     P    +D +K   SI+++   S  + L   +D  G
Sbjct: 25  FHSKSLNVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFG 84

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQ 114
           I  +   +  ++  F +   L F F    +  +  Y+ S   + ++I  L    KI +  
Sbjct: 85  IPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEAL 144

Query: 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
            ++D +     +   +V T+  ++    +V     A+     M++      +  ++ ++ 
Sbjct: 145 QLFDKMTGEGFQP--DVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIID 202

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           +LCK + + +A  +F  M  + I P++ TYS L+ G     +   A  +F  M+     P
Sbjct: 203 SLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMP 262

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D +T+  +VD LCK G V +A  +V  M  +  +P    Y+ L+  + + + +   V+ F
Sbjct: 263 DQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVF 322

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M + G +  V  Y  LI  +CK         + ++M+ +G+ P++ T N +++GL   
Sbjct: 323 DTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHV 382

Query: 354 GETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G   +A  +F  M+   +  D  TY ++    C+   L +A  + K ++     P +H +
Sbjct: 383 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 442

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           S++++G+C  G +  +  L   +  KG+ P   T+  +   L ++G
Sbjct: 443 SIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQG 488


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 185/376 (49%), Gaps = 26/376 (6%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S++  L K ++      L+  M+   ++ NV T+  +++        + A   F +M+
Sbjct: 500 YNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMME 559

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY-SILLEGWGKDPNLP 217
           + G+  +  A+  L  ALCK+    +A+E +  +  + +  +K Y + L++G+ K  N  
Sbjct: 560 QNGLKPDEHAYAVLTDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTD 616

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   M+D GC PD  TY +++  LCK  R++EAL I+  M     + T F Y++L+
Sbjct: 617 FAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILI 676

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                E + + A   + EM  +G       Y   I ++CK  + ++   ++  M  +GVA
Sbjct: 677 DEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVA 736

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-------- 388
           P+  T NI+++G    G  D A+   +RM+   CE +  TY +++K   +G         
Sbjct: 737 PDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVD 796

Query: 389 --------ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
                   EL+  +++ + M      P++ T+S LI G C  G + ++C+LL+ M  KG+
Sbjct: 797 TSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGL 856

Query: 441 RPSGETFGKLRKLLIK 456
            P+ + +     LLIK
Sbjct: 857 SPNEDIY----TLLIK 868



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 204/426 (47%), Gaps = 40/426 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+     +VRA+  +I  L K  +      L +AM    ++ +V T+  ++  Y+++ ++
Sbjct: 280 KRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRM 339

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
            +A+    +M+K G   +   +N L+  LC  K     + + + +K+ F P   T++ L+
Sbjct: 340 NDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLI 399

Query: 208 EGW----------------------------GKDPN-------LPRAREIFREMVDTGCN 232
            G+                            GK  N       L  A+E+  E+   G  
Sbjct: 400 NGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLV 459

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P+++TY  ++D  CK+G+VD AL ++K M+   C+P ++ Y+ L++    + ++  A+  
Sbjct: 460 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 519

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             +M+K+GI+ +V  Y  L+   C  + F N +R+ + M   G+ P+     ++ + L  
Sbjct: 520 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579

Query: 353 RGETDEAYR-VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G  +EAY  + R+ + L +     YT +I  F + G  + A  + + M  +   P  +T
Sbjct: 580 AGRAEEAYSFIVRKGVALTKV---YYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 636

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +SVL++ LC +  ++++  +L+ M  +GI+ +   +  L   +++EG+ D  K +  +M 
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 472 LLVKEP 477
               +P
Sbjct: 697 SSGHKP 702



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 167/363 (46%), Gaps = 6/363 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           ++ +  +I SL K  + +   +L+N +    ++ NV T+  I+  Y +  KV+ A+    
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
           +M++ G   N   +N L+  L K K + KA  +   M KD  IP+  TY+ LL+G   + 
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +   A  +F  M   G  PD   Y ++ D LCKAGR +EA   +      +   T   Y+
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVAL---TKVYYT 603

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +      + A      M   G   D   Y+ L+ A CK  +      +L  M+ +
Sbjct: 604 TLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLR 663

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKA 393
           G+        I+++ ++  G+ D A R++  M        A TYT+ I  +C+ G LE A
Sbjct: 664 GIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDA 723

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   M+ +   P + T+++LI+G    G +  +   L+ M+     P+  T+  L K 
Sbjct: 724 EDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKH 783

Query: 454 LIK 456
           L+K
Sbjct: 784 LLK 786



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 189/427 (44%), Gaps = 37/427 (8%)

Query: 60  RVSPEIVE-DVLEKFRNAGT-----LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR-- 111
           R++P +    V + FR   T      A  FF+W  ++  + H+  ++ +++  L++ R  
Sbjct: 47  RLAPSVTAAHVADLFRADSTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAP 106

Query: 112 -QYQ-IMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNV--MQKYGVTQN 165
            QY+ ++  ++N   T   + V    I  I R  +    +    Y F +  + ++ +T+ 
Sbjct: 107 AQYERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEY 166

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           +      L                  ++D  +PD+ TY+ +++ + K+ +L  A   FR 
Sbjct: 167 MGRVYSQL------------------VQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRL 208

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           +++ G  P+  T   +V   C+ G + +A  +   M    C+   + Y++L+        
Sbjct: 209 LLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKC 268

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +  A+  FL M+++G   +V  +  LI   CK+ +  +   +   M   GV P+  T N 
Sbjct: 269 VRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNA 328

Query: 346 ILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++ G    G  ++A ++   M K  C  D  TY  +I   C   + E+A ++      + 
Sbjct: 329 MIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEG 387

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           F P++ TF+ LING C      D+  +   M+    +   + FGKL   LIK+ R   LK
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDR---LK 444

Query: 465 FLQEKMN 471
             +E +N
Sbjct: 445 EAKELLN 451



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 127/309 (41%), Gaps = 29/309 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ AY  +I+ + +  ++     + N M +     +  T+ + +  Y +  ++E+A    
Sbjct: 668 TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLI 727

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-----PDSKTYSILLEG 209
             M++ GV  ++  +N L+        + +A   F  +K R +     P+  TY +LL+ 
Sbjct: 728 LKMEREGVAPDVVTYNILIDGCGHMGYIDRA---FSTLK-RMVGASCEPNYWTYCLLLKH 783

Query: 210 WGKDPNLPRAR-----------------EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
             K  NL   R                 ++   MV  G NP + TY  ++   CKAGR++
Sbjct: 784 LLKG-NLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLE 842

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++  M      P   IY++L+         E A+     M + G    +  Y  L+
Sbjct: 843 EACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLV 902

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
              C    F+ V  +  D+   G   +     I+ +GL+  G  D  +++   M K  C 
Sbjct: 903 VGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCC 962

Query: 372 ADADTYTMM 380
             + TY ++
Sbjct: 963 ISSQTYALV 971


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 185/376 (49%), Gaps = 26/376 (6%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S++  L K ++      L+  M+   ++ NV T+  +++        + A   F +M+
Sbjct: 500 YNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMME 559

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY-SILLEGWGKDPNLP 217
           + G+  +  A+  L  ALCK+    +A+E +  +  + +  +K Y + L++G+ K  N  
Sbjct: 560 QNGLKPDEHAYAVLTDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTD 616

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   M+D GC PD  TY +++  LCK  R++EAL I+  M     + T F Y++L+
Sbjct: 617 FAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILI 676

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                E + + A   + EM  +G       Y   I ++CK  + ++   ++  M  +GVA
Sbjct: 677 DEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVA 736

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-------- 388
           P+  T NI+++G    G  D A+   +RM+   CE +  TY +++K   +G         
Sbjct: 737 PDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVD 796

Query: 389 --------ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
                   EL+  +++ + M      P++ T+S LI G C  G + ++C+LL+ M  KG+
Sbjct: 797 TSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGL 856

Query: 441 RPSGETFGKLRKLLIK 456
            P+ + +     LLIK
Sbjct: 857 SPNEDIY----TLLIK 868



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 204/426 (47%), Gaps = 40/426 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+     +VRA+  +I  L K  +      L +AM    ++ +V T+  ++  Y+++ ++
Sbjct: 280 KRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRM 339

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
            +A+    +M+K G   +   +N L+  LC  K     + + + +K+ F P   T++ L+
Sbjct: 340 NDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLI 399

Query: 208 EGW----------------------------GKDPN-------LPRAREIFREMVDTGCN 232
            G+                            GK  N       L  A+E+  E+   G  
Sbjct: 400 NGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLV 459

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P+++TY  ++D  CK+G+VD AL ++K M+   C+P ++ Y+ L++    + ++  A+  
Sbjct: 460 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 519

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             +M+K+GI+ +V  Y  L+   C  + F N +R+ + M   G+ P+     ++ + L  
Sbjct: 520 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579

Query: 353 RGETDEAYR-VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G  +EAY  + R+ + L +     YT +I  F + G  + A  + + M  +   P  +T
Sbjct: 580 AGRAEEAYSFIVRKGVALTKV---YYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 636

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +SVL++ LC +  ++++  +L+ M  +GI+ +   +  L   +++EG+ D  K +  +M 
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 472 LLVKEP 477
               +P
Sbjct: 697 SSGHKP 702



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 167/363 (46%), Gaps = 6/363 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           ++ +  +I SL K  + +   +L+N +    ++ NV T+  I+  Y +  KV+ A+    
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
           +M++ G   N   +N L+  L K K + KA  +   M KD  IP+  TY+ LL+G   + 
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +   A  +F  M   G  PD   Y ++ D LCKAGR +EA   +      +   T   Y+
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVAL---TKVYYT 603

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +      + A      M   G   D   Y+ L+ A CK  +      +L  M+ +
Sbjct: 604 TLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLR 663

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKA 393
           G+        I+++ ++  G+ D A R++  M        A TYT+ I  +C+ G LE A
Sbjct: 664 GIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDA 723

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   M+ +   P + T+++LI+G    G +  +   L+ M+     P+  T+  L K 
Sbjct: 724 EDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKH 783

Query: 454 LIK 456
           L+K
Sbjct: 784 LLK 786



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 190/427 (44%), Gaps = 37/427 (8%)

Query: 60  RVSPEIVE-DVLEKFRNAGT-----LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR-- 111
           R++P +    V + FR   T      A  FF+W  ++  + H+  ++ +++  L++ R  
Sbjct: 47  RLAPSVTAAHVADLFRAESTAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAP 106

Query: 112 -QYQ-IMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYTFNV--MQKYGVTQN 165
            QY+ ++  ++N   T   + V    I  I R  +    +    Y F +  + ++ +T+ 
Sbjct: 107 AQYERLVVSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEY 166

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           +      L                  ++D  +PD+ TY+ +++ + K+ +L  A   FR 
Sbjct: 167 MGRVYSQL------------------VQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRL 208

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           +++ G  P+  T   +V   C+ G + +A  +   M    C+   + Y++L+        
Sbjct: 209 LLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKC 268

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           + +A+  FL M+++G   +V  +  LI   CK+ +  +   +   M   GV P+  T N 
Sbjct: 269 VREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNA 328

Query: 346 ILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++ G    G  ++A ++   M K  C  D  TY  +I   C   + E+A ++      + 
Sbjct: 329 MIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEG 387

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           F P++ TF+ LING C      D+  +   M+    +   + FGKL   LIK+ R   LK
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDR---LK 444

Query: 465 FLQEKMN 471
             +E +N
Sbjct: 445 EAKELLN 451



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 127/309 (41%), Gaps = 29/309 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ AY  +I+ + +  ++     + N M +     +  T+ + +  Y +  ++E+A    
Sbjct: 668 TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLI 727

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-----PDSKTYSILLEG 209
             M++ GV  ++  +N L+        + +A   F  +K R +     P+  TY +LL+ 
Sbjct: 728 LKMEREGVAPDVVTYNILIDGCGHMGYIDRA---FSTLK-RMVGASCEPNYWTYCLLLKH 783

Query: 210 WGKDPNLPRAR-----------------EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
             K  NL   R                 ++   MV  G NP + TY  ++   CKAGR++
Sbjct: 784 LLKG-NLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLE 842

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++  M      P   IY++L+         E A+     M + G    +  Y  L+
Sbjct: 843 EACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLV 902

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
              C    F+ V  +  D+   G   +     I+ +GL+  G  D  +++   M K  C 
Sbjct: 903 VGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCC 962

Query: 372 ADADTYTMM 380
             + TY ++
Sbjct: 963 ISSQTYALV 971


>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
 gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 541

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 205/463 (44%), Gaps = 28/463 (6%)

Query: 28  STEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF-CFFKW 86
           ST   D+A + +  +LS  +     +L  +GI   P + + +          A     +W
Sbjct: 11  STLPNDSAAAAASTVLSILRGEDPASLPAAGIDPCPAVFQQLRPSLPTVPDSALPALARW 70

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146
           A +            + +  L     +   W L+ A  +     +  F  ++R+YAR+ +
Sbjct: 71  AGEA-----------TAVSLLTSRGLFAAAWRLLLA-PSPTPPPLAAFAPLVRRYARLGR 118

Query: 147 VEEAVYTFNVMQK----YGVTQNLAAFNGLLS----ALCKSKNVRKAQEIFDCMKDR--- 195
              A+  F  +++    Y    ++ A   LL+    ALCK  + R A E+F+  +     
Sbjct: 119 APAALRAFQFLRRHPDRYMAGGDIPAAASLLNMAVDALCKEGHPRAAVELFERWRREEPD 178

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             PD + Y+ILL GW +   L +  +++ EM   G  P +VTYG +++ LC   R D+A+
Sbjct: 179 SPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAI 238

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M            + +V+      R +DA     +    G+  +++ +N+L+  +
Sbjct: 239 ALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGY 298

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK         VLK M  +G++P +RT N          + +     + +MI      D 
Sbjct: 299 CKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQ 358

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY +++KM  +   LE   ++ + M+   F P + T ++LI+ LC +    ++C   ED
Sbjct: 359 LTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFED 418

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           M ++GI P   T+ KL + L + G   ++  +Q+  NL+   P
Sbjct: 419 MFKRGIVPQYITYQKLMRELKRLG---LVHLIQKLTNLMRSVP 458


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 167/340 (49%), Gaps = 13/340 (3%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF--DCMKD 194
           +M    R+ KV+EA      M       N   +N L++    S    +A+++   + +  
Sbjct: 311 LMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIA 366

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            F PD+ T++I+++G  K   L  A E   EMV  G  P+++TY I++D  CK G  +EA
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             +V SM +      +  Y+ L+     + +I+DA+  + EM   G   D+  +N+LI  
Sbjct: 427 SKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYG 486

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEAD 373
            CK +K +    + +DM  +GV  N+ T N +++  +      +A ++   M  + C  D
Sbjct: 487 LCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLD 546

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY  +IK  C+ G  EK   + + M  +   PS+++ ++LIN  C  G V+D+   L 
Sbjct: 547 NITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLR 606

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           DMI++G+ P   T+  L   L K GR       QE +NL 
Sbjct: 607 DMIQRGLTPDIVTYNSLINGLCKMGR------FQEALNLF 640



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 156/319 (48%), Gaps = 4/319 (1%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDS 200
            R ++ ++ +Y   V+   G   +   FN ++  LCK   +  A E  D M K  F P+ 
Sbjct: 350 GRFEEAKDLLYKNMVIA--GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNV 407

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+IL++G+ K  +   A ++   M   G + + V Y  ++  LCK G++ +AL +   
Sbjct: 408 ITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGE 467

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M S  C+P  + ++ L++     +++E+A+  + +M   G++A+   YN LI AF +   
Sbjct: 468 MSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLEL 527

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTM 379
            +   +++ +M  +G   ++ T N ++  L   G T++   +  +M  +      ++  +
Sbjct: 528 IQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNI 587

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I  FC+ G++  A +  + M  +   P + T++ LINGLC  G   ++  L   +  KG
Sbjct: 588 LINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKG 647

Query: 440 IRPSGETFGKLRKLLIKEG 458
           I P   T+  L      EG
Sbjct: 648 IHPDAVTYNTLISRYCYEG 666



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 181/392 (46%), Gaps = 10/392 (2%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKY 141
            F+ A  Q+ Y HS   Y+ +I+ L  + +++++  L+  M+ +  +  E+ F +IMR Y
Sbjct: 80  LFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYY 139

Query: 142 ARVQKVEEAV-YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
            +     +A     ++   Y       ++N +L  L      + A  +F  M  R I P 
Sbjct: 140 GKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPT 199

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T+ ++++ +     +  A  + R+M   GC P+ + Y +++  L +  RV+EA+ +++
Sbjct: 200 VYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLE 259

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M    C P    ++ ++H      RI +A      M      AD  +   L+   C+  
Sbjct: 260 EMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMG 319

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR--MIKLCEADADTY 377
           K        + M SK   PN+   N ++NG +  G  +EA  +  +  +I   E DA T+
Sbjct: 320 KVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTF 375

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +MI   C+ G L  A +    M  K F P++ T+++LI+G C +G   ++  ++  M  
Sbjct: 376 NIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSA 435

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           KG+  +   +  L   L K+G+ +D L+   E
Sbjct: 436 KGLSLNTVGYNCLIGALCKDGKIQDALQMYGE 467



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++ +E +V  Y  +I+   K   ++    +VN+M  K + LN   +  ++    +  K++
Sbjct: 400 KKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQ 459

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           +A+  +  M   G   ++  FN L+  LCK+  + +A  ++ D + +  I ++ TY+ L+
Sbjct: 460 DALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLI 519

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
             + +   + +A ++  EM   GC  D +TY  ++  LCK G  ++ LG+++ M      
Sbjct: 520 HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIF 579

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P+    ++L++++    ++ DA+    +M + G+  D+  YN+LI   CK  +F+    +
Sbjct: 580 PSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNL 639

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
              + +KG+ P                                  DA TY  +I  +C  
Sbjct: 640 FNGLQAKGIHP----------------------------------DAVTYNTLISRYCYE 665

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           G    A ++        FIP+  T+S+LIN
Sbjct: 666 GLFNDACQLLFKGVSNGFIPNEITWSILIN 695



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 2/234 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++S+I  L K  + +    L   M  + ++ N  T+  ++  + R++ +++A     
Sbjct: 477 IYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVG 536

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M+  G   +   +NGL+ ALCK+    K   + + M  +   P   + +IL+  + +  
Sbjct: 537 EMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTG 596

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A +  R+M+  G  PDIVTY  +++ LCK GR  EAL +   + +    P +  Y+
Sbjct: 597 KVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYN 656

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            L+  Y  E    DA     +   NG + +   ++ LI  F K N     + +L
Sbjct: 657 TLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTIL 710



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 7/252 (2%)

Query: 215 NLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
           ++P + ++F +  +  G       Y +++D L   G       ++K M    C     ++
Sbjct: 73  DVPTSMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLF 132

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGIL---ADVAMYNALIGAFCKANKFKNVYRVLKD 330
            +++  YG       A    L+M   G+         YN ++      N  K    V  D
Sbjct: 133 ILIMRYYGKAGLPGQATRLLLDMW--GVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYD 190

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M S+G++P   T  +++       E D A  + R M K  C  ++  Y M+I    +   
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNR 250

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + +A K+ + M L    P + TF+ +I+GLC  G + ++  L + M+ +         G 
Sbjct: 251 VNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGY 310

Query: 450 LRKLLIKEGRED 461
           L   L + G+ D
Sbjct: 311 LMHGLCRMGKVD 322



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G +    +Y  LI       +FK + ++LK M  +G         +I+      G   
Sbjct: 87  QRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPG 146

Query: 358 EAYRVFRRM--IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +A R+   M  +   E    +Y +++++   G   + A  V+  M  +   P+++TF V+
Sbjct: 147 QATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVV 206

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           +   C    V  +C LL DM + G  P+   +  L   L +  R +    L E+M L+  
Sbjct: 207 MKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGC 266

Query: 476 EP 477
           EP
Sbjct: 267 EP 268


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 195/420 (46%), Gaps = 42/420 (10%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIM 138
           A   F    +QQ + H+   Y S+I++LAK +++Q +  +++ M      ++   F  +M
Sbjct: 66  ALDIFNMVSEQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLM 125

Query: 139 RKYARVQKVEEAVYTF-------------------------------------NVMQKYG 161
           + +++    E  +  F                                     N   K  
Sbjct: 126 KHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLLVNARSKLN 185

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGKDPNLPRA 219
           +  N   FN L+   C++ +++ A E+   MK   +  P+  TYS L+ G  ++  L  A
Sbjct: 186 LRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEA 245

Query: 220 REIFREMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
            E F EMV      PD +TY I+++  C+ G+VD A  I++ M S  C P  F YSVL++
Sbjct: 246 IEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMN 305

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            Y  E R+++A + F E++  G+  D   Y  LI   C+  +      +L+ M  K    
Sbjct: 306 GYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRA 365

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           ++ T N++L GL   G  DEA  + +++  +    +  +Y +++    Q GEL KA ++ 
Sbjct: 366 DTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELL 425

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M  + F+P   T + L+  LC+ G+V D+   L  ++E G +P  E++  L  L+ +E
Sbjct: 426 GLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRE 485



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 159/340 (46%), Gaps = 17/340 (5%)

Query: 148 EEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSI 205
           + A+  FN V ++ G   N A +  ++  L K K  +    +   M  D        +  
Sbjct: 64  QHALDIFNMVSEQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLN 123

Query: 206 LLEGWGKDPNLPRAREIF---REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           L++ + K     R  ++F   + +V     P +      +++L ++ RVD A  ++ +  
Sbjct: 124 LMKHFSKSSMHERVLDMFYAIKSIVRE--KPSLKAISTCLNLLVESDRVDLARKLLVNAR 181

Query: 263 STV-CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKANK 320
           S +  RP + I+++LV  +     ++ A +   EM+   +   ++  Y+ LIG  C+  K
Sbjct: 182 SKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGK 241

Query: 321 FKNVYRVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
            K      ++M SK  + P++ T NI++NG   RG+ D A  +   M    C  +   Y+
Sbjct: 242 LKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYS 301

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           +++  +C+ G L++A +V+  +K     P   +++ LIN LC  G V ++  LL+ M +K
Sbjct: 302 VLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDK 361

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
             R    TF  +   L +EGR D      E ++++ K P 
Sbjct: 362 DCRADTVTFNVMLGGLCREGRFD------EALDMVQKLPF 395



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 143/301 (47%), Gaps = 13/301 (4%)

Query: 180 KNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++ + A +IF+ + ++  F  +  TY+ +++   K         +  +M    C    V 
Sbjct: 61  RDPQHALDIFNMVSEQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCK---VH 117

Query: 238 YGIMVDVL---CKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTF 293
            GI ++++    K+   +  L +  ++ S V  +P+    S  ++     +R++ A    
Sbjct: 118 EGIFLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLL 177

Query: 294 LEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLI 351
           +    K  +  +  ++N L+   C+    +  + V+K+M S  V+ PN  T + ++ GL 
Sbjct: 178 VNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLC 237

Query: 352 GRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             G+  EA   F  M+       DA TY ++I  FCQ G++++A  + ++MK     P++
Sbjct: 238 ENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNV 297

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
             +SVL+NG C +G + ++  +  ++   G++P   ++  L   L + GR D    L ++
Sbjct: 298 FNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQ 357

Query: 470 M 470
           M
Sbjct: 358 M 358



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 36/232 (15%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  KV+ A      M+  G + N+  ++ L++  CK   +++A+E+F+ +
Sbjct: 264 TYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEI 323

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K   + PD+ +Y+ L+    +   +  A E+ ++M D  C  D VT+ +M+  LC+ GR 
Sbjct: 324 KSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRF 383

Query: 252 DEALGIVKSM---------------------DSTVCRPTSFIYSVL----VHTYGVENR- 285
           DEAL +V+ +                        + + T  +  +L    V  +   N  
Sbjct: 384 DEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSNTL 443

Query: 286 ---------IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
                    ++DAV++ L + + G   +   +  L+   C+  K   V+ +L
Sbjct: 444 LLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFELL 495


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 178/375 (47%), Gaps = 37/375 (9%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++  + R  +V+ A     +M++ G+  NL  FN +++ +CK+  +  A+++F
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M ++   PD  +Y+ L+ G+ K      A  +F EM   G  PD+VT+  ++ V+CKA
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 249 GRV-----------------------------------DEALGIVKSMDSTVCRPTSFIY 273
           G +                                   D+AL  V+ M     +P+   Y
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCY 403

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y +  R+++A +   EME  G+  DV  Y+ +I A+CK     + + + + M  
Sbjct: 404 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 463

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KGV P++ T + ++  L G     +A+ +F+ MIKL  + D  TYT +I   C+ G +E 
Sbjct: 464 KGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVES 523

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +   M     +P + T+SVLINGL       ++  LL  +  +   P+   +  L  
Sbjct: 524 ALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMH 583

Query: 453 LLIKEGREDVLKFLQ 467
              K   + VL  L+
Sbjct: 584 CCRKAELKSVLALLK 598



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 182/383 (47%), Gaps = 6/383 (1%)

Query: 92  NYEHSVRAYHSMIESL--AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
            Y  SV AY++++ +L  A +   +  +D  + +      NV T+ I++R        +E
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSARRFFD--SMLSDGVAPNVYTYNILVRALCGRGHRKE 208

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+     M+  G   N+  +N L++A  ++  V  A+ +   M++  + P+  T++ ++ 
Sbjct: 209 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVN 268

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   +  AR++F EMV  G  PD V+Y  +V   CKAG   EAL +   M      P
Sbjct: 269 GMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 328

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               ++ L+H       +E AV    +M + G+  +   + ALI  FCK     +    +
Sbjct: 329 DVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAV 388

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQG 387
           + M    + P+    N ++NG    G  DEA  +   M  K  + D  TY+ +I  +C+ 
Sbjct: 389 RGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 448

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            +   AF++ + M  K  +P   T+S LI  LC +  +SD+ VL ++MI+ G++P   T+
Sbjct: 449 CDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTY 508

Query: 448 GKLRKLLIKEGREDVLKFLQEKM 470
             L     KEG  +    L +KM
Sbjct: 509 TSLIDGHCKEGNVESALSLHDKM 531



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 182/392 (46%), Gaps = 18/392 (4%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+     V  + S+I  + K    +    LV  MR + + +N  TF  ++  + +   ++
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 382

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+     M++  +  ++  +N L++  C    + +A+E+   M+ + + PD  TYS ++
Sbjct: 383 DALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTII 442

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
             + K+ +   A E+ ++M++ G  PD +TY  ++ VLC   R+ +A  + K+M     +
Sbjct: 443 SAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQ 502

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F Y+ L+  +  E  +E A+    +M K G+L DV  Y+ LI    K+ +     ++
Sbjct: 503 PDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL 562

Query: 328 LKDMNSKGVAPNS---------------RTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
           L  +  +   P +               ++   +L G   +G  +EA +V++ M+ +   
Sbjct: 563 LFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 622

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D   Y+++I   C+ G + KA    K M    F P+  +   LI GL + G+V ++  +
Sbjct: 623 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQV 682

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
           ++ ++        E    L  L + EG  D +
Sbjct: 683 IQQLLNYCSLADAEASKALIDLNLNEGNVDAV 714



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 156/375 (41%), Gaps = 29/375 (7%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           H  +   A++ Q  IM D+V            TF  ++    +   +E AV     M++ 
Sbjct: 312 HEALSVFAEMTQKGIMPDVV------------TFTSLIHVMCKAGNLERAVTLVRQMRER 359

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRA 219
           G+  N   F  L+   CK   +  A      MK  R  P    Y+ L+ G+     +  A
Sbjct: 360 GLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEA 419

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
           RE+  EM   G  PD+VTY  ++   CK      A  + + M      P +  YS L+  
Sbjct: 420 RELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRV 479

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
              E R+ DA   F  M K G+  D   Y +LI   CK    ++   +   M   GV P+
Sbjct: 480 LCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPD 539

Query: 340 SRTCNIILNGLIGRGETDEAYRV---------------FRRMIKLC-EADADTYTMMIKM 383
             T ++++NGL       EA ++               +  ++  C +A+  +   ++K 
Sbjct: 540 VVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKG 599

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC  G + +A KV++ M  + +      +SVLI+G C  G V  +    + M++ G  P+
Sbjct: 600 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPN 659

Query: 444 GETFGKLRKLLIKEG 458
             +   L + L + G
Sbjct: 660 STSTISLIRGLFENG 674



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 145/341 (42%), Gaps = 24/341 (7%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           KQ   + SV  Y+++I     + +     +L++ M  K +  +V T+  I+  Y +    
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 451

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
             A      M + GV  +   ++ L+  LC  K +  A  +F  M K    PD  TY+ L
Sbjct: 452 HSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 511

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G  K+ N+  A  +  +MV  G  PD+VTY ++++ L K+ R  EA  ++  +     
Sbjct: 512 IDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDP 571

Query: 267 RPTSFIYSVLVH------------------TYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            P +  Y  L+H                    G+ N  +    + L+   N    D ++Y
Sbjct: 572 IPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN---LDGSVY 628

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + LI   C+A          K M   G APNS +   ++ GL   G   EA +V ++++ 
Sbjct: 629 SVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLN 688

Query: 369 LCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
            C  ADA+    +I +    G ++    V   M     +PS
Sbjct: 689 YCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 187/374 (50%), Gaps = 5/374 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ-KVEEAVYT 153
           SV ++ ++I +  +  QY+   +L++ M+ +R+  ++ T+  ++   AR     EE +  
Sbjct: 180 SVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGL 239

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
           F  M+  G+  ++  +N LLSA  +     +A+ +F  M +  I PD  TYS L+E +GK
Sbjct: 240 FAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGK 299

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L +  E+ +EM   G  PDI +Y ++++   ++G + EA+G+ + M    C P +  
Sbjct: 300 LNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAAT 359

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS+L++ YG   R +D  D FLEM+ +    + A YN LI  F +   FK V  +  DM 
Sbjct: 360 YSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMV 419

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + V PN  T   ++      G  ++A ++   M  K     +  YT +I+ + Q    E
Sbjct: 420 EENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYE 479

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A   +  M      P++ T++ LI      G+  +S  +L  M + G+  + +TF  + 
Sbjct: 480 EALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVI 539

Query: 452 KLLIKEGR-EDVLK 464
           +   + G+ E+ +K
Sbjct: 540 EAFRQGGQFEEAIK 553



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 7/347 (2%)

Query: 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRK 184
           K  L++  F ++ +++A+    + ++  F  MQ+      N   +  ++  L +   + K
Sbjct: 105 KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEK 164

Query: 185 AQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
            QEIFD M    + P   +++ L+  +G++     + E+   M     +P I+TY  +++
Sbjct: 165 CQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVIN 224

Query: 244 VLCKAGRVD--EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
             C  G +D  E LG+   M     +     Y+ L+         ++A   F  M + GI
Sbjct: 225 S-CARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGI 283

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           L D+  Y+ L+  F K N+ + V  +LK+M S G  P+  + N++L      G   EA  
Sbjct: 284 LPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMG 343

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           VFR+M    C  +A TY++++ ++ + G  +    ++  MK+    P+  T+++LIN   
Sbjct: 344 VFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFG 403

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFL 466
           + G   +   L  DM+E+ + P+ ET+  L     K G  ED  K L
Sbjct: 404 EGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKIL 450



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 168/357 (47%), Gaps = 3/357 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y  ++E+  K+ + + + +L+  M +     ++ ++ +++  +A+   ++EA+  F 
Sbjct: 287 ITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFR 346

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            MQ  G   N A ++ LL+   +       +++F  MK     P++ TY+IL+  +G+  
Sbjct: 347 QMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGG 406

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                  +F +MV+    P++ TY  ++    K G  ++A  I+  M+     P+S  Y+
Sbjct: 407 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYT 466

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  YG     E+A+  F  M + G    V  YN+LI  F K   +K    +L  M   
Sbjct: 467 GVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQS 526

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           GVA N  T N ++      G+ +EA + +  M K  C+ D  T   ++ ++C  G +E++
Sbjct: 527 GVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEES 586

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            + +  +K    +PS+  + +++          D+  LL++M    +    +  G++
Sbjct: 587 EEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQM 643



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 203 YSILLEGWGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           ++++ + + +  +  R+  +F+ M     C P+   Y IM+ VL + G +++   I   M
Sbjct: 113 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEM 172

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN-K 320
            S    P+ F ++ L++ YG   + + +++    M+K  +   +  YN +I +  +    
Sbjct: 173 PSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLD 232

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
           ++ +  +   M  +G+  +  T N +L+    RG  DEA  VFR M +     D  TY+ 
Sbjct: 233 WEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSY 292

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +++ F +   LEK  ++ K M+     P + +++VL+      G + ++  +   M   G
Sbjct: 293 LVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAG 352

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             P+  T+  L  L  + GR D ++ L  +M +   EP
Sbjct: 353 CVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEP 390



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 7/248 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQ---IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           S +AY  +IE+  +   Y+   + ++ +N + +K    VET+  +++ +A+    +E+  
Sbjct: 461 SSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKP--TVETYNSLIQMFAKGGLYKESEA 518

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
               M + GV +N   FNG++ A  +     +A + +  M K R  PD +T   +L  + 
Sbjct: 519 ILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYC 578

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTS 270
               +  + E F E+   G  P ++ Y +M+ V  KA R D+A  ++  M  + V     
Sbjct: 579 FAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQ 638

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            I  ++   Y  ++  +     F +++  G    V  YN L+ A     + +   RVL +
Sbjct: 639 VIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNE 698

Query: 331 MNSKGVAP 338
              +G+ P
Sbjct: 699 ATKRGLFP 706


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 162/328 (49%), Gaps = 2/328 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM- 192
           F ++MR   R  K+  A   F+ M + GV   +  FN L+S +CK+ ++  A  +   M 
Sbjct: 247 FNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMA 306

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    PD  TY   ++G  K   +  A E+F EM + G NP+ V +  ++D  CK G V 
Sbjct: 307 KAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVA 366

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
             L + + M +   +     Y+ L +       ++ A D   EM  NG+  D   Y  LI
Sbjct: 367 AGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLI 426

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             FCK  +      + ++M+ +GVA +  T   +++GL   G + ++ R+   M++   E
Sbjct: 427 DGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLE 486

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYTM+I  FC+  +++  FK+ K M+ K   P + T++V++NG C  G + ++ +L
Sbjct: 487 PDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADML 546

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L  M+  G+ P   T+  L     K G+
Sbjct: 547 LNAMLNIGVCPDDITYNILLDGHCKHGK 574



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 126/267 (47%), Gaps = 4/267 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+   M+   +  ++++AV  F  M++ GV  N   F  L+ A CK  NV    E+ 
Sbjct: 313 DVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELH 372

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R I  D   Y+ L  G  +  +L  A +I  EM + G  PD VTY  ++D  CK 
Sbjct: 373 REMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKE 432

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +D A+ + + M           Y+ L+       R  D+     EM + G+  D   Y
Sbjct: 433 GELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTY 492

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-- 366
             +I AFCK +  K  +++LK+M +KG  P   T N+++NG    G+   A  +   M  
Sbjct: 493 TMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLN 552

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKA 393
           I +C  D  TY +++   C+ G++  A
Sbjct: 553 IGVCPDDI-TYNILLDGHCKHGKVRDA 578



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY+++   L ++R  +   D+V  MR   +  +  T+  ++  + +  +++ A+     M
Sbjct: 386 AYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEM 445

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
              GV  +   +  L+S L KS     ++ I  + M+    PD+ TY+++++ + K+ ++
Sbjct: 446 SDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDV 505

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
               ++ +EM + G  P +VTY ++++  C  G++  A  ++ +M +    P    Y++L
Sbjct: 506 KTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNIL 565

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           +  +    ++ DA +  L+  K G+++D  +Y +LI  F K    K+ +
Sbjct: 566 LDGHCKHGKVRDAEE--LKSAK-GMVSDFGLYTSLINEFVKKKSTKSYH 611



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 100/230 (43%), Gaps = 1/230 (0%)

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D++ +   V EA      +      P +  +++L+       ++  A + F EM + G+ 
Sbjct: 217 DLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVP 276

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
             V  +N L+   CKA+   +   +   M   GVAP+  T    + GL   G   +A  +
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  M  +    +   +T +I   C+ G +    ++ + M  +     +  ++ L NGLC 
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCR 396

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
              +  +  ++E+M   G++P   T+  L     KEG  D+   ++++M+
Sbjct: 397 VRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMS 446


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 177/362 (48%), Gaps = 5/362 (1%)

Query: 86  WAEK--QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
           W +K  + + E  V +Y  +I+SL K R      DL   MR+  +   V T+  ++    
Sbjct: 231 WMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMC 290

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSK 201
              + ++A   F  M ++ +  ++  F+ L+ ALCK   V +A  +F  M +    PD  
Sbjct: 291 NSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIV 350

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TYS L+ G  K      +  +  EM+     PD+VT+ I VDV CK G V EA  I+  M
Sbjct: 351 TYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLM 410

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                RP    Y+ L+  Y + +++++A   F  M   G   DV  YN LI  +CK+ + 
Sbjct: 411 IERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERI 470

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMM 380
               ++  +M+ KG+ PNS T   +++GL   G    A  +F++M    C  D  TY+ +
Sbjct: 471 DEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTL 530

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  FC+ G L++A  +++ +K  +  P+     +L+ G+C  G + D+  L   +  + +
Sbjct: 531 LSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEEL 590

Query: 441 RP 442
           +P
Sbjct: 591 QP 592



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 3/373 (0%)

Query: 92  NYEHSVRAYHSMIESLA-KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
            ++ S+  ++++I  L  + R  + M  L   M       V T  +I+    ++ K   A
Sbjct: 169 GFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
           +     M +      + +++ ++ +LCK++ V +A ++F  M+   I P   TY+ L+ G
Sbjct: 229 IVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYG 288

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                   +A  +F+EM++    PD+VT+ I+VD LCK G V EAL +   M      P 
Sbjct: 289 MCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPD 348

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              YS L+H     +  +++     EM    I  DV  ++  +  FCK         ++ 
Sbjct: 349 IVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIIN 408

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
            M  +G+ PN  T N +++G     + DEA +VF  M+ K C  D  +Y ++IK +C+  
Sbjct: 409 LMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSE 468

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +++A +++  M  K   P+  T + LI+GLC  G    +  L + M   G  P   T+ 
Sbjct: 469 RIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYS 528

Query: 449 KLRKLLIKEGRED 461
            L     K G  D
Sbjct: 529 TLLSGFCKHGHLD 541



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 176/364 (48%), Gaps = 17/364 (4%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQ--IMWDLVNAMRTKRMLNVE------TFCIIMRKY 141
            + Y+ +V  +  ++  L KI +    I+W        K+M+ ++      ++ II+   
Sbjct: 202 SRGYQPTVYTHTMIVNGLCKIGKTSAAIVW-------MKKMVELDCEPEVVSYSIIIDSL 254

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDS 200
            + + V EAV  F  M+  G++  +  +N L+  +C S   ++A  +F  M +    PD 
Sbjct: 255 CKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDV 314

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            T+SIL++   K+  +  A  +F +M+     PDIVTY  ++  +CK+    E+  ++  
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE 374

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M S   RP    +S+ V  +  +  + +A      M + G+  +V  YN+L+  +C  ++
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTM 379
                +V   M +KG AP+  + NI++ G       DEA ++F  M  K    ++ T+T 
Sbjct: 435 MDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   CQ G    A +++K M      P + T+S L++G C  G + ++  L E + +  
Sbjct: 495 LISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQ 554

Query: 440 IRPS 443
           ++P+
Sbjct: 555 LKPN 558



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 156/322 (48%), Gaps = 2/322 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           +  F  ++    R++  +  V  +  M+ +GV+ ++     L++ LC    V     +  
Sbjct: 104 ITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLG 163

Query: 191 -CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
              K  F P   T++ L+ G   +  +  A E    ++  G  P + T+ ++V+ LCK G
Sbjct: 164 KIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIG 223

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +   A+  +K M    C P    YS+++ +      + +AVD F  M   GI   V  YN
Sbjct: 224 KTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYN 283

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
           +LI   C + ++K    + K+M    + P+  T +I+++ L   G   EA  VF +MI++
Sbjct: 284 SLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI 343

Query: 370 C-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E D  TY+ +I   C+    +++  +   M  +   P + TFS+ ++  C KG+VS++
Sbjct: 344 AMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEA 403

Query: 429 CVLLEDMIEKGIRPSGETFGKL 450
             ++  MIE+G+RP+  T+  L
Sbjct: 404 QSIINLMIERGLRPNVVTYNSL 425



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 183/416 (43%), Gaps = 44/416 (10%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAVY 152
           +  ++ ++ +L +++ Y     +V+  R      V     T  I++     +  V     
Sbjct: 104 ITQFNQLLAALVRMKHYD---SVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFS 160

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
               + K G   ++  FN L++ LC    + +A E  D +  R + P   T+++++ G  
Sbjct: 161 VLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLC 220

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT-- 269
           K      A    ++MV+  C P++V+Y I++D LCK   V+EA+ +   M S    PT  
Sbjct: 221 KIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVV 280

Query: 270 ---SFIY------------------------------SVLVHTYGVENRIEDAVDTFLEM 296
              S IY                              S+LV     E  + +A+  F +M
Sbjct: 281 TYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM 340

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            +  +  D+  Y++LI   CK++ +K    +L +M S+ + P+  T +I ++    +G  
Sbjct: 341 IQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMV 400

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
            EA  +   MI +    +  TY  ++  +C   ++++A KV+  M  K   P + ++++L
Sbjct: 401 SEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNIL 460

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           I G C    + ++  L ++M  KG+ P+  T   L   L + GR    K L +KM 
Sbjct: 461 IKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 128/252 (50%), Gaps = 2/252 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q   E  +  Y S+I  + K   ++    L+N M ++ +  +V TF I +  + +   V 
Sbjct: 342 QIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVS 401

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
           EA    N+M + G+  N+  +N L+   C    + +A+++FD M ++   PD  +Y+IL+
Sbjct: 402 EAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILI 461

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K   +  A+++F EM   G  P+ +T+  ++  LC+AGR   A  + K M S  C 
Sbjct: 462 KGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCP 521

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    YS L+  +     +++A+  F  ++K+ +  +  +   L+G  CKA K ++   +
Sbjct: 522 PDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKEL 581

Query: 328 LKDMNSKGVAPN 339
              ++ + + P+
Sbjct: 582 FSSLSIEELQPD 593



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 1/177 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +M  Y    +++EA   F++M   G   ++ ++N L+   CKS+ + +A+++F
Sbjct: 418 NVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLF 477

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  +   P+S T++ L+ G  +      A+E+F++M   GC PD++TY  ++   CK 
Sbjct: 478 DEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKH 537

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           G +DEAL + +++  +  +P   I  +L+       ++EDA + F  +    +  DV
Sbjct: 538 GHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 1/249 (0%)

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           G   N   A   F +MV     P I  +  ++  L +    D  + I + M+      + 
Sbjct: 80  GSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSV 139

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           +  ++L++     + +        ++ K G    +  +N LI   C   +       L  
Sbjct: 140 YTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDY 199

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           + S+G  P   T  +I+NGL   G+T  A    ++M++L CE +  +Y+++I   C+   
Sbjct: 200 IMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRL 259

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + +A  ++ +M+     P++ T++ LI G+C+ G    + +L ++M+E  ++P   TF  
Sbjct: 260 VNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319

Query: 450 LRKLLIKEG 458
           L   L KEG
Sbjct: 320 LVDALCKEG 328



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTC----NIILNGLIGRGETDEAYRVFRRMIKL-C 370
           CK   F N    L   N + V  N   C    N +L  L+     D    ++R+M     
Sbjct: 77  CKGGSFSNFDDALAYFN-QMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGV 135

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                T T++I   C    +   F V   +    F PS+ TF+ LINGLC +G + ++  
Sbjct: 136 SCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAME 195

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            L+ ++ +G +P+  T   +   L K G+        +KM  L  EP
Sbjct: 196 QLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEP 242


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 183/413 (44%), Gaps = 43/413 (10%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + Y   V +Y +++    +  +   +W L+  M+ K +  N   +  I+    R+ K+ E
Sbjct: 275 KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 334

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------ 197
           A   F+ M + G+  +   +  L+   CK  ++R A + F  M  R I            
Sbjct: 335 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 394

Query: 198 ------------------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
                                   PDS T++ L+ G+ K  ++  A  +   M+  GC+P
Sbjct: 395 GFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           ++VTY  ++D LCK G +D A  ++  M     +P  F Y+ +V+       IE+AV   
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            E E  G+ AD   Y  L+ A+CK+ +      +LK+M  KG+ P   T N+++NG    
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574

Query: 354 GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G  ++  ++   M+ K    +A T+  ++K +C    L+ A  ++K M  +   P   T+
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-----EGRE 460
             L+ G C    + ++  L ++M  KG   S  T+  L K  +K     E RE
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 687



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 2/318 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           K   A+  F    + GV  N+A++N ++  +C+   +++A  +   M+ + + PD  +YS
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            ++ G+ +   L +  ++   M   G  P+   YG ++ +LC+  ++ EA      M   
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P + +Y+ L+  +     I  A   F EM    I  DV  Y A+I  FC+       
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
            ++  +M  KG+ P+S T   ++NG    G   +A+RV   MI+  C  +  TYT +I  
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            C+ G+L+ A ++   M      P++ T++ ++NGLC  G + ++  L+ +    G+   
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 444 GETFGKLRKLLIKEGRED 461
             T+  L     K G  D
Sbjct: 526 TVTYTTLMDAYCKSGEMD 543



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 197/437 (45%), Gaps = 62/437 (14%)

Query: 93  YEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA- 150
           YE   +  H +I  L KI+  Y+++ D  +  R++R  N+E+ CI++      + ++ A 
Sbjct: 81  YECKFKTDH-LIWVLMKIKCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQ 139

Query: 151 --VYTFNVMQKYGVTQNLAAFNGLL------------------SALCKSKNVRKAQEIF- 189
             + +F    K  VT +   F  LL                    L     +R+A+ +F 
Sbjct: 140 SLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFE 199

Query: 190 -----------------------DCMKD-------RFIPD------SKTYSILLEGWGKD 213
                                  DC K        R  P+        +Y+I++    + 
Sbjct: 200 KMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQL 259

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   M   G  PD+++Y  +V+  C+ G +D+   +++ M     +P S+IY
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             ++       ++ +A + F EM + GIL D  +Y  LI  FCK    +   +   +M+S
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS 379

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + P+  T   I++G    G+  EA ++F  M  K  E D+ T+T +I  +C+ G ++ 
Sbjct: 380 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKD 439

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF+V  +M      P++ T++ LI+GLC +G +  +  LL +M + G++P+  T+  +  
Sbjct: 440 AFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVN 499

Query: 453 LLIKEGR-EDVLKFLQE 468
            L K G  E+ +K + E
Sbjct: 500 GLCKSGNIEEAVKLVGE 516



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 122/238 (51%), Gaps = 1/238 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    +   ++ A    + M K G+  N+  +N +++ LCKS N+ +A ++ 
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
              +   +  D+ TY+ L++ + K   + +A+EI +EM+  G  P IVT+ ++++  C  
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +++   ++  M +    P +  ++ LV  Y + N ++ A   + +M   G+  D   Y
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             L+   CKA   K  + + ++M  KG + +  T ++++ G + R +  EA  VF +M
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           + ++  Y+S++  L K    +    LV       +  +  T+  +M  Y +  ++++A  
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
               M   G+   +  FN L++  C    +   +++ + M  + I P++ T++ L++ + 
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
              NL  A  I+++M   G  PD  TY  +V   CKA  + EA  + + M       +  
Sbjct: 608 IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVS 667

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            YSVL+  +    +  +A + F +M + G+ AD  +++
Sbjct: 668 TYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 705


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 183/413 (44%), Gaps = 43/413 (10%)

Query: 91   QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
            + Y   V +Y +++    +  +   +W L+  M+ K +  N   +  I+    R+ K+ E
Sbjct: 718  KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 777

Query: 150  AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------ 197
            A   F+ M + G+  +   +  L+   CK  ++R A + F  M  R I            
Sbjct: 778  AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 837

Query: 198  ------------------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
                                    PDS T++ L+ G+ K  ++  A  +   M+  GC+P
Sbjct: 838  GFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 897

Query: 234  DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
            ++VTY  ++D LCK G +D A  ++  M     +P  F Y+ +V+       IE+AV   
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 957

Query: 294  LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             E E  G+ AD   Y  L+ A+CK+ +      +LK+M  KG+ P   T N+++NG    
Sbjct: 958  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 1017

Query: 354  GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
            G  ++  ++   M+ K    +A T+  ++K +C    L+ A  ++K M  +   P   T+
Sbjct: 1018 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 1077

Query: 413  SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-----EGRE 460
              L+ G C    + ++  L ++M  KG   S  T+  L K  +K     E RE
Sbjct: 1078 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE 1130



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 2/318 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           K   A+  F    + GV  N+A++N ++  +C+   +++A  +   M+ + + PD  +YS
Sbjct: 669 KTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 728

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            ++ G+ +   L +  ++   M   G  P+   YG ++ +LC+  ++ EA      M   
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P + +Y+ L+  +     I  A   F EM    I  DV  Y A+I  FC+       
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 848

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
            ++  +M  KG+ P+S T   ++NG    G   +A+RV   MI+  C  +  TYT +I  
Sbjct: 849 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 908

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            C+ G+L+ A ++   M      P++ T++ ++NGLC  G + ++  L+ +    G+   
Sbjct: 909 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 444 GETFGKLRKLLIKEGRED 461
             T+  L     K G  D
Sbjct: 969 TVTYTTLMDAYCKSGEMD 986



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 197/437 (45%), Gaps = 62/437 (14%)

Query: 93  YEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA- 150
           YE   +  H +I  L KI+  Y+++ D  +  R++R  N+E+ CI++      + ++ A 
Sbjct: 524 YECKFKTDH-LIWVLMKIKCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQ 582

Query: 151 --VYTFNVMQKYGVTQNLAAFNGLL------------------SALCKSKNVRKAQEIF- 189
             + +F    K  VT +   F  LL                    L     +R+A+ +F 
Sbjct: 583 SLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFE 642

Query: 190 -----------------------DCMKD-------RFIPD------SKTYSILLEGWGKD 213
                                  DC K        R  P+        +Y+I++    + 
Sbjct: 643 KMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQL 702

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   M   G  PD+++Y  +V+  C+ G +D+   +++ M     +P S+IY
Sbjct: 703 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 762

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             ++       ++ +A + F EM + GIL D  +Y  LI  FCK    +   +   +M+S
Sbjct: 763 GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS 822

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + P+  T   I++G    G+  EA ++F  M  K  E D+ T+T +I  +C+ G ++ 
Sbjct: 823 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKD 882

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF+V  +M      P++ T++ LI+GLC +G +  +  LL +M + G++P+  T+  +  
Sbjct: 883 AFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVN 942

Query: 453 LLIKEGR-EDVLKFLQE 468
            L K G  E+ +K + E
Sbjct: 943 GLCKSGNIEEAVKLVGE 959



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 122/238 (51%), Gaps = 1/238 (0%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            NV T+  ++    +   ++ A    + M K G+  N+  +N +++ LCKS N+ +A ++ 
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 957

Query: 190  DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
               +   +  D+ TY+ L++ + K   + +A+EI +EM+  G  P IVT+ ++++  C  
Sbjct: 958  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 1017

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G +++   ++  M +    P +  ++ LV  Y + N ++ A   + +M   G+  D   Y
Sbjct: 1018 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 1077

Query: 309  NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
              L+   CKA   K  + + ++M  KG + +  T ++++ G + R +  EA  VF +M
Sbjct: 1078 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 1135



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 94   EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
            + ++  Y+S++  L K    +    LV       +  +  T+  +M  Y +  ++++A  
Sbjct: 931  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 990

Query: 153  TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
                M   G+   +  FN L++  C    +   +++ + M  + I P++ T++ L++ + 
Sbjct: 991  ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 1050

Query: 212  KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               NL  A  I+++M   G  PD  TY  +V   CKA  + EA  + + M       +  
Sbjct: 1051 IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVS 1110

Query: 272  IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
             YSVL+  +    +  +A + F +M + G+ AD  +++
Sbjct: 1111 TYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 1148


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 189/425 (44%), Gaps = 43/425 (10%)

Query: 79  LAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRMLNVET 133
           LA   F +A K    + H+   YHS++  L++ R +     +M DL N+    +      
Sbjct: 62  LALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIK-CGENL 120

Query: 134 FCIIMRKYARVQKVEEAVYTF------------------------------------NVM 157
           F  ++R Y    + E ++  F                                    N  
Sbjct: 121 FIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSK 180

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           + +G+T N+   N L+ ALCK  ++  A ++ D +     +P+  TY+ +L G+    ++
Sbjct: 181 ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDM 240

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +  EM+D G  PD +TY +++D  CK GR  EA  ++  M+     P    Y V+
Sbjct: 241 ESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVM 300

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     E +  +A + F EM     + D ++   +I A C+ +K      + + M     
Sbjct: 301 IRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 360

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            P++   + +++ L   G   EA ++F    K       TY  +I   C+ GEL +A ++
Sbjct: 361 MPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSLLTYNTLIAGMCEKGELTEAGRL 420

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           W  M  ++  P+  T++VLI GL   G V +   +LE+M+E G  P+  TF  L + L K
Sbjct: 421 WDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQK 480

Query: 457 EGRED 461
            G+E+
Sbjct: 481 LGKEE 485



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 4/262 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ ++M  Y ++ +  EA    + M+K  +  N   +  ++ ALCK K   +A+ +FD M
Sbjct: 261 TYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEM 320

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            DR F+PDS     +++   +D  +  A  ++R+M+   C PD      ++  LCK GRV
Sbjct: 321 LDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRV 380

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA  +    D     P+   Y+ L+     +  + +A   + +M +     +   YN L
Sbjct: 381 SEARKLFDEFDKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVL 439

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I    K    K   RVL++M   G  PN  T  I+  GL   G+ ++A ++    +   +
Sbjct: 440 IEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNGK 499

Query: 372 ADADTYTMMIKMFCQGGELEKA 393
            D +++ + +  F   GEL+K 
Sbjct: 500 VDKESWELFLNKFV--GELDKG 519



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 134/314 (42%), Gaps = 38/314 (12%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGKDPNLP 217
           G T N   ++ +L  L +++     + +   +++ + P       +  LL  +G      
Sbjct: 76  GFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYE 135

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            +  IF  + D G    + +   +++VL +  R D                       LV
Sbjct: 136 SSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFD-----------------------LV 172

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H        +++ ++F      GI  ++   N L+ A CK N  ++ Y+VL ++ + G+ 
Sbjct: 173 HAM-----FKNSKESF------GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLV 221

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T   IL G + RG+ + A RV   M+ +    DA TYT+++  +C+ G   +A  V
Sbjct: 222 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATV 281

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M+     P+  T+ V+I  LC +    ++  + ++M+++   P      K+   L +
Sbjct: 282 MDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCE 341

Query: 457 EGREDVLKFLQEKM 470
           + + D    L  KM
Sbjct: 342 DHKVDEACGLWRKM 355



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 1/193 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVM 157
            Y  MI +L K ++     ++ + M  +  +   + C  ++       KV+EA   +  M
Sbjct: 296 TYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKM 355

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            K     + A  + L+  LCK   V +A+++FD      IP   TY+ L+ G  +   L 
Sbjct: 356 LKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSLLTYNTLIAGMCEKGELT 415

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  ++ +M +  C P+  TY ++++ L K G V E + +++ M  + C P    + +L 
Sbjct: 416 EAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILF 475

Query: 278 HTYGVENRIEDAV 290
                  + EDA+
Sbjct: 476 EGLQKLGKEEDAI 488


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 168/365 (46%), Gaps = 3/365 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++ ++ S+AK + +  +  L   M +  +  +V T  I++     + +V+ A      + 
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKIL 132

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
           K G   +   F  L+  LC    + +A  +FD M  + F P+  TY  L+ G  K  N  
Sbjct: 133 KLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTS 192

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  + R M    C P++V +  ++D LCK  +V EA  I   M +    P    Y+ L+
Sbjct: 193 AAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 252

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H        +       EM  + I+ DV   N ++ A CK       + V+  M  +GV 
Sbjct: 253 HGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 312

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +++G   R E D A +VF  M+ K C A+  +Y  +I  +C+   ++KA  +
Sbjct: 313 PNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYL 372

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ M  +   P+  T++ LI+GLC  G + D+  L  +M+ +G  P   T+  L   L K
Sbjct: 373 FEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432

Query: 457 EGRED 461
               D
Sbjct: 433 NRHLD 437



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 202/452 (44%), Gaps = 11/452 (2%)

Query: 16  ISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           +S   R    +P    +D  +   SI+K    S  + L   +D  GI      +  V+  
Sbjct: 55  LSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINS 114

Query: 73  FRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRM 128
             +   + F F   A+  +  ++     + ++I  L    KI +   ++D    +     
Sbjct: 115 LCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFD--KMIGEGFQ 172

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            NV T+  ++    +V     A+     M++     N+  F+ L+ +LCK + V +A  I
Sbjct: 173 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNI 232

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M  + I P+  TY+ L+ G  K         +  EMVD+   PD+ T   +VD LCK
Sbjct: 233 FSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 292

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G V EA  +V  M      P    Y+ L+  + + N ++ AV  F  M     +A+V  
Sbjct: 293 EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS 352

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI  +CK         + ++M+ + + PN+ T N +++GL   G   +A  +F  M+
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 412

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
              +  D  TY  +    C+   L+KA  + K ++   + P +  ++ +++G+C  G + 
Sbjct: 413 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 472

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           D+  L  ++  KG++P+  T+  +   L K+G
Sbjct: 473 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 504



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 152/310 (49%), Gaps = 6/310 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V   ++++++L K        D+V+ M  + +  NV T+  +M  +    +V+ AV  F+
Sbjct: 280 VFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFD 339

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M       N+ ++N L++  CK ++V KA  +F+ M +    P++ TY+ L+ G     
Sbjct: 340 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 399

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +F EMV  G  PD+VTY  + D LCK   +D+A+ ++K+++ +   P   IY+
Sbjct: 400 RLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYT 459

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++        +EDA D F  +   G+  +V  YN +I   CK        ++  +MN  
Sbjct: 460 TILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN 519

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G +PN  T N+I  G +   E      +   M+ +    D  T T+++ M    G L+++
Sbjct: 520 GCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQS 578

Query: 394 FK--VWKYMK 401
            K  + KY++
Sbjct: 579 VKQILCKYVQ 588



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 1/244 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   F  M+     P  V +  ++  + K       L + + MDS    P  +  ++
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++++    NR++ A     ++ K G   D   +  LI   C   K      +   M  +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             PN  T   ++NGL   G T  A R+ R M +  C+ +   ++ +I   C+  ++ +AF
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  M  K   P++ T++ LI+GLC          L+ +M++  I P   T   +   L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 455 IKEG 458
            KEG
Sbjct: 291 CKEG 294



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 2/235 (0%)

Query: 96  SVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y+++I    KI+   + M+      R +   N  T+  ++     V ++++A+  F
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 408

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
           + M   G   +L  +  L   LCK++++ KA  +   ++   + PD + Y+ +L+G  + 
Sbjct: 409 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 468

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  AR++F  +   G  P++ TY IM+  LCK G + EA  +   M+   C P    Y
Sbjct: 469 GELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY 528

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           +++   +   N     ++   EM   G   DV+    L+G        ++V ++L
Sbjct: 529 NLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 168/365 (46%), Gaps = 3/365 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++ ++ S+AK + +  +  L   M +  +  +V T  I++     + +V+ A      + 
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKIL 132

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
           K G   +   F  L+  LC    + +A  +FD M  + F P+  TY  L+ G  K  N  
Sbjct: 133 KLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTS 192

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  + R M    C P++V +  ++D LCK  +V EA  I   M +    P    Y+ L+
Sbjct: 193 AAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 252

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H        +       EM  + I+ DV   N ++ A CK       + V+  M  +GV 
Sbjct: 253 HGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 312

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +++G   R E D A +VF  M+ K C A+  +Y  +I  +C+   ++KA  +
Sbjct: 313 PNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYL 372

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ M  +   P+  T++ LI+GLC  G + D+  L  +M+ +G  P   T+  L   L K
Sbjct: 373 FEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432

Query: 457 EGRED 461
               D
Sbjct: 433 NRHLD 437



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 202/452 (44%), Gaps = 11/452 (2%)

Query: 16  ISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           +S   R    +P    +D  +   SI+K    S  + L   +D  GI      +  V+  
Sbjct: 55  LSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINS 114

Query: 73  FRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRM 128
             +   + F F   A+  +  ++     + ++I  L    KI +   ++D    +     
Sbjct: 115 LCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFD--KMIGEGFQ 172

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            NV T+  ++    +V     A+     M++     N+  F+ L+ +LCK + V +A  I
Sbjct: 173 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNI 232

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M  + I P+  TY+ L+ G  K         +  EMVD+   PD+ T   +VD LCK
Sbjct: 233 FSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 292

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G V EA  +V  M      P    Y+ L+  + + N ++ AV  F  M     +A+V  
Sbjct: 293 EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS 352

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI  +CK         + ++M+ + + PN+ T N +++GL   G   +A  +F  M+
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 412

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
              +  D  TY  +    C+   L+KA  + K ++   + P +  ++ +++G+C  G + 
Sbjct: 413 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 472

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           D+  L  ++  KG++P+  T+  +   L K+G
Sbjct: 473 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 504



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 147/302 (48%), Gaps = 4/302 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V   ++++++L K        D+V+ M  + +  NV T+  +M  +    +V+ AV  F+
Sbjct: 280 VFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFD 339

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M       N+ ++N L++  CK ++V KA  +F+ M +    P++ TY+ L+ G     
Sbjct: 340 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 399

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +F EMV  G  PD+VTY  + D LCK   +D+A+ ++K+++ +   P   IY+
Sbjct: 400 RLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYT 459

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++        +EDA D F  +   G+  +V  YN +I   CK        ++  +MN  
Sbjct: 460 TILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN 519

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G +PN  T N+I  G +   E      +   M+ +    D  T T+++ M    G L+++
Sbjct: 520 GCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQS 578

Query: 394 FK 395
            K
Sbjct: 579 VK 580



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 140/284 (49%), Gaps = 2/284 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
            +  E +V  Y+++++      +  +   + + M  K  + NV ++  ++  Y ++Q V+
Sbjct: 308 HRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVD 367

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILL 207
           +A+Y F  M +  +T N   +N L+  LC    ++ A  +F  M  R  IPD  TY  L 
Sbjct: 368 KAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLS 427

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +   K+ +L +A  + + +  +  +PDI  Y  ++D +C+AG +++A  +  ++ S   +
Sbjct: 428 DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQ 487

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  + Y++++H    +  + +A   F EM KNG   +   YN +   F + N+      +
Sbjct: 488 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIEL 547

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           L++M ++G + +  T  +++  L   G      ++  +++ L E
Sbjct: 548 LEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKIVILYE 591



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 1/244 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   F  M+     P  V +  ++  + K       L + + MDS    P  +  ++
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++++    NR++ A     ++ K G   D   +  LI   C   K      +   M  +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             PN  T   ++NGL   G T  A R+ R M +  C+ +   ++ +I   C+  ++ +AF
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  M  K   P++ T++ LI+GLC          L+ +M++  I P   T   +   L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 455 IKEG 458
            KEG
Sbjct: 291 CKEG 294


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 172/372 (46%), Gaps = 5/372 (1%)

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRK 140
           CF+   EK      ++   +S++    K+ + +  W L   M R +   +V TF I++  
Sbjct: 173 CFYTMKEK--GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINV 230

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
             +  K+++A      M+  GV  N+  +N ++   C S  V  A  I   MK + I PD
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD 290

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           S TY  L+ G  K   L  A +IF EMV  G  P  V Y  ++D  C  G +D A     
Sbjct: 291 SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      PT   Y+ L+H   +E R ++A     E+++ GI  D   YN LI  +C+  
Sbjct: 351 EMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA 410

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
             K  + +  +M + G+ P  +T   +L+ L  +    EA  +F+++  +    D   + 
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFN 470

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C    ++ AF++ K M   +  P   TF+ ++ G C +G V ++  L ++M  +
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 439 GIRPSGETFGKL 450
           GI+P   +F  L
Sbjct: 531 GIKPDHISFNTL 542



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 44/396 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  ++ MI  L K  + +   D V  M T  +  N+ T+  I+  Y    +VE A    
Sbjct: 220 SVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAIL 279

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M++  +  +   +  L+S +CK   + +A +IF+ M  + + P +  Y+ L++G+   
Sbjct: 280 TTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNK 339

Query: 214 PNLPRARE-----------------------------------IFREMVDTGCNPDIVTY 238
            NL  A                                     + +E+ + G +PD +TY
Sbjct: 340 GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY 399

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I+++  C+     +A  +   M ++  +PT   Y+ L+H    +NR+++A D F ++  
Sbjct: 400 NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G+L DV M+NALI   C  +  K  + +LKDM+   V P+  T N I+ G    G+ +E
Sbjct: 460 EGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEE 519

Query: 359 AYRVF----RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           A  +F    RR IK    D  ++  +I  + + G+++ AF+V   M    F P++ T++ 
Sbjct: 520 ARELFDEMKRRGIK---PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNA 576

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           L+ GLC       +  LL++M+ KG+ P   T+  L
Sbjct: 577 LVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 200/417 (47%), Gaps = 9/417 (2%)

Query: 62  SPEIVEDVLEKFRNAGTL-----AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           SP+    +L++    GT       F F   +  +  ++ S+  +  +I+S   + +    
Sbjct: 112 SPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSI-VFDYLIKSCCDMNRADEA 170

Query: 117 WDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
           ++    M+ K +L  +ET   ++  + ++ + E A   +  M +  +  ++  FN +++ 
Sbjct: 171 FECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINV 230

Query: 176 LCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK   ++KA++    M+   + P+  TY+ ++ G+     +  A  I   M      PD
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD 290

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
             TYG ++  +CK GR++EA  I + M     RP++ IY+ L+  +  +  ++ A     
Sbjct: 291 SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           EM K GI   ++ YN+LI A     +      ++K++  KG++P++ T NI++NG     
Sbjct: 351 EMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA 410

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
              +A+ +   M+    +    TYT ++ +  +   +++A  ++K +  +  +P +  F+
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFN 470

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            LI+G C    V  +  LL+DM    + P   TF  + +   +EG+ +  + L ++M
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 3/306 (0%)

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQ 114
           Q G+R S  I   +++ F N G L     +K    ++    ++  Y+S+I +L   ++  
Sbjct: 319 QKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTD 378

Query: 115 IMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
               ++  ++ K +  +  T+ I++  Y R    ++A    + M   G+      +  LL
Sbjct: 379 EAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438

Query: 174 SALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
             L K   +++A ++F     +  +PD   ++ L++G   + N+  A E+ ++M      
Sbjct: 439 HVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVP 498

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD VT+  ++   C+ G+V+EA  +   M     +P    ++ L+  Y     I+DA   
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM   G    V  YNAL+   CK  +      +LK+M SKG+ P+  T   ++ G+  
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618

Query: 353 RGETDE 358
               DE
Sbjct: 619 VNIPDE 624


>gi|326494526|dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 488

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 214/454 (47%), Gaps = 23/454 (5%)

Query: 26  EPSTEAL----DAAKSISKI-----MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNA 76
           EP+  A     DA     KI     +L+S    ++ ALD + +RV+   VE VL      
Sbjct: 24  EPAAPAFPTYKDAPDLAPKIRLLCEILASSASDVEAALDDADVRVTTSDVEQVLRFSYAH 83

Query: 77  GTLAFCFFKWA-EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135
              A  FF+WA  +  +++HS  +++ +I+ L K R +  MWD V +MR + +L++ TF 
Sbjct: 84  PRGAAAFFRWAGHRHLHHQHSPYSWNLVIDLLGKNRLFDPMWDTVGSMRAQGLLSLATFA 143

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
            I    A        +  F  M +YG+ ++  A N LLSALC++  +  A+      +  
Sbjct: 144 SIFSSLA-ANPTSSPLKAFVEMPRYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAE 202

Query: 196 F--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNP-DIVTYGIMVDVLCKAGR- 250
               PD+ +Y+ILLEG     N   ARE+F EMV     +P ++  Y   +  L  +G  
Sbjct: 203 AGTRPDADSYAILLEGCEAAGNAAVAREVFDEMVHALDFDPANVPAYDSFLTTLVSSGSS 262

Query: 251 --VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE-MEKNGILADVAM 307
             + +A+  +  +    C P        +  Y     +  AV  + E + + G++ D  M
Sbjct: 263 TALSDAMEYLAVLRRYRCSPGEKFLRAALAAYLEARELRSAVVLWDEFVLRRGLVPDKEM 322

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  +I         +   + L +M   GV P++ T N++L  L+   +  EA  +F+ M+
Sbjct: 323 YTTMIMLQGTLGHAEVTVKYLDEMAIYGVFPDADTYNVVLKLLLKGRKLREASAIFKEMV 382

Query: 368 K-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           K  C  +    ++ + MF    + +   KVWK M      P     ++L++ L D+ ++ 
Sbjct: 383 KNECWPNEANCSLALGMFLDTRDWDTGIKVWKCMAANSLPPLEEGGNMLVSKLKDE-MLP 441

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLL--IKEG 458
           ++C   EDMI++GI+ S  T  KL+  L  +K+G
Sbjct: 442 EACKYAEDMIDQGIKLSSSTLTKLKHSLGKVKKG 475


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 171/359 (47%), Gaps = 3/359 (0%)

Query: 103 MIESLAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           +I SL  + +    +  L   ++     +  TF  ++R      K+ EA++ F+ M   G
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 145

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
              N+  +  L++ LCK + V +A  IF  M  + I P+  TY+ L+ G  K        
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +  EMVD+   PD+ T   +VD LCK G V EA  +V  M      P    Y+ L+  +
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 265

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
            + N ++ AV  F  M     +A+V  YN LI  +CK         + ++M+ + + PN+
Sbjct: 266 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 325

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N +++GL   G   +A  +F  M+   +  D  TY  +    C+   L+KA  + K 
Sbjct: 326 VTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKA 385

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           ++   + P +  ++ +++G+C  G + D+  L  ++  KG++P+  T+  +   L K+G
Sbjct: 386 IEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 444



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 2/307 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           M  +G+  ++     ++++LC    V  A   +   +K    PD+ T++ L+ G   +  
Sbjct: 71  MDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 130

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +F +M+  G  P++VTYG +++ LCK  +V EA  I   M +    P    Y+ 
Sbjct: 131 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNS 190

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+H        +       EM  + I+ DV   N ++ A CK       + V+  M  +G
Sbjct: 191 LIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG 250

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
           V PN  T N +++G   R E D A +VF  M+ K C A+  +Y  +I  +C+   ++KA 
Sbjct: 251 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAM 310

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +++ M  +   P+  T++ LI+GLC  G + D+  L  +M+ +G  P   T+  L   L
Sbjct: 311 YLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 370

Query: 455 IKEGRED 461
            K    D
Sbjct: 371 CKNRHLD 377



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 180/391 (46%), Gaps = 34/391 (8%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           S   +  ++ S+AK++ Y  +  L   M +  +  +V T  I++  +  ++++    Y F
Sbjct: 580 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLG---YAF 636

Query: 155 NVMQKY-------------------------GVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V+ K                          G++ ++  +N L+ ALC     +    + 
Sbjct: 637 SVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLL 696

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M   + +P+   +S +++   K+  +  A ++   M+  G  PD+VTY  ++D  C  
Sbjct: 697 NEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLR 756

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +DEA+ +  +M    C P    Y++L++ Y    R++ A+    +M   G++AD   Y
Sbjct: 757 SEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTY 816

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI   C   + ++   +  +M + G  P+  T  I+L+ L       EA  V  + I+
Sbjct: 817 NTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM-VLLKAIE 875

Query: 369 LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
               DAD   Y + I   C+ GELE A  ++  +  K   P + T++++I+GLC +G++ 
Sbjct: 876 GSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLD 935

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           ++  L   M E  I  S  T  + +K LI +
Sbjct: 936 EANKLFRKMDENDIW-SNSTSSRNQKSLIYQ 965



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 3/268 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +M  +    +V+ AV  F+ M       N+ ++N L++  CK ++V KA  +F
Sbjct: 254 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 313

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M +    P++ TY+ L+ G      L  A  +F EMV  G  PD+VTY  + D LCK 
Sbjct: 314 EEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN 373

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +D+A+ ++K+++ +   P   IY+ ++        +EDA D F  +   G+  +V  Y
Sbjct: 374 RHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N +I   CK        ++  +MN  G +PN  T N+I  G +   E      +   M+ 
Sbjct: 434 NIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLA 493

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFK 395
           +    D  T T+++ M    G L+++ K
Sbjct: 494 RGFSVDVSTTTLLVGMLSDDG-LDQSVK 520



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 165/333 (49%), Gaps = 5/333 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+S+I  L K+ +++ +  L+N M  +K M +V T   ++    +   V EA    
Sbjct: 184 NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV 243

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
           ++M   GV  N+  +N L+   C    V  A ++FD M  +  + +  +Y+ L+ G+ K 
Sbjct: 244 DMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKI 303

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            ++ +A  +F EM      P+ VTY  ++  LC  GR+ +A+ +   M +    P    Y
Sbjct: 304 QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 363

Query: 274 SVLVHTYGVENRIEDAVDTFLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
             L   Y  +NR  D     L+ +E +    D+ +Y  ++   C+A + ++   +  +++
Sbjct: 364 RTL-SDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLS 422

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELE 391
           SKG+ PN  T NI+++GL  +G   EA ++F  M K  C  +  TY ++ + F +  E  
Sbjct: 423 SKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEAL 482

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           +  ++ + M  + F   + T ++L+  L D G+
Sbjct: 483 RTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 515



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 96  SVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y+++I    KI+   + M+      R +   N  T+  ++     V ++++A+  F
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 348

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
           + M   G   +L  +  L   LCK++++ KA  +   ++   + PD + Y+ +L+G  + 
Sbjct: 349 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 408

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  AR++F  +   G  P++ TY IM+  LCK G + EA  +   M+   C P    Y
Sbjct: 409 GELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY 468

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL--KDM 331
           +++   +   N     ++   EM   G   DV+    L+G        ++V ++L     
Sbjct: 469 NLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSS 528

Query: 332 NSKGVAPNSRTCNIILNGLIGR---------GETDEAYRVFRRMIKLCEADADT-YTMMI 381
           +S+      R+   +                   D+A   F RM+ +    +   +T ++
Sbjct: 529 SSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLL 588

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               +         +   M      P ++T ++LIN  C    +  +  +L  +++ G +
Sbjct: 589 TSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQ 648

Query: 442 PSGETFGKLRKLLIK 456
           P   T+G L   L K
Sbjct: 649 PDVVTYGTLMNGLCK 663



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 146/366 (39%), Gaps = 71/366 (19%)

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199
           K      ++EA+ TFN M       +   FN LL+++ K+K+                  
Sbjct: 19  KPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKH------------------ 60

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
              +S LL              + R+M   G  PD+ T  I+++ LC   RVD A   + 
Sbjct: 61  ---HSTLLS-------------LSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALA 104

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            +     +P +  ++ L+    VE +I +A+  F +M   G   +V  Y  LI   CK  
Sbjct: 105 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDR 164

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNG------------------------------ 349
           +    + +  +M +KG++PN  T N +++G                              
Sbjct: 165 QVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLN 224

Query: 350 -----LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
                L   G   EA+ V   MI +  E +  TY  ++   C   E++ A KV+  M  K
Sbjct: 225 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 284

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
             + ++ +++ LING C    V  +  L E+M  + + P+  T+  L   L   GR +D 
Sbjct: 285 DCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA 344

Query: 463 LKFLQE 468
           +    E
Sbjct: 345 ISLFHE 350



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/446 (19%), Positives = 180/446 (40%), Gaps = 73/446 (16%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++ + L K R       L+ A+       +++ +  I+    R  ++E+A   F+ +
Sbjct: 362 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 421

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G+  N+  +N ++  LCK   + +A ++F  M K+   P+  TY+++  G+ ++   
Sbjct: 422 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEA 481

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            R  E+  EM+  G + D+ T  ++V +L   G +D+++  +    S+  RP+      L
Sbjct: 482 LRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG-LDQSVKQILCKPSSSSRPSGTQMRSL 540

Query: 277 VHTYGVE------------NRIEDAVDTF------------------------------- 293
              +               N ++DA+ +F                               
Sbjct: 541 PPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTV 600

Query: 294 ----LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
                +M+  GI  DV   N LI +FC   +    + VL  +   G  P+  T   ++NG
Sbjct: 601 LSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNG 660

Query: 350 L---IGRGETDEAY---RVFRRMIKLCE-----------------ADADTYTMMIKMFCQ 386
           L   I +G + + +    +   +  LCE                  +   ++ ++   C+
Sbjct: 661 LCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 720

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G +  A  V   M  +   P + T++ L++G C +  + ++  + + M+ KG  P+  +
Sbjct: 721 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS 780

Query: 447 FGKLRKLLIKEGREDVLKFLQEKMNL 472
           +  L     +  R D    L E+M+L
Sbjct: 781 YNILINGYCQIQRMDKAMGLLEQMSL 806


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 220/459 (47%), Gaps = 39/459 (8%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           +LS P    + +L      ++P  V  +     +  T A  F  W  +  N++H+V +Y 
Sbjct: 47  ILSKPNWQNNPSLKSLLPAITPSHVSSLFSLNLDPHT-ALQFSYWISQTPNFKHNVDSYA 105

Query: 102 SMIESLAKIRQYQIMWDLVNAM--------RTKRMLNVETFCIIMRK------------- 140
           S+   L  I  ++I+ D+   +             L V   C  M K             
Sbjct: 106 SL---LTLIDHHKIVSDVPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNE 162

Query: 141 ----YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC--MKD 194
                AR   V+E    +  M +  V+ ++  FN +++  CK   V++A++ F C  ++ 
Sbjct: 163 LLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQ-FMCKMIQA 221

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
              PD  T +  + G+ +  ++  A  +F EM     N + V+Y  ++  LC+AGR+DEA
Sbjct: 222 GLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMP----NRNEVSYNQLIHGLCEAGRIDEA 277

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + +   M    C P  + Y+ L+     +N +  A+    EM +  ++ D+  YN+LI  
Sbjct: 278 VSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAG 336

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
            C+A    + YR+L  M  +G+ P+ RT    ++ L      +EA R+F  + +    A+
Sbjct: 337 QCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSAN 396

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              Y+++I  +C+ G++++A  +++ M  K   P+ +TF+ LI+GLC  G + ++  L +
Sbjct: 397 VIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFD 456

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
            M++ G++P+  TF  L   ++K+G  +D  K LQ+ M+
Sbjct: 457 QMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMS 495



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 151/312 (48%), Gaps = 3/312 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           +++EAV  F  M+      N+  +  L+  LC+ KNV KA  + D M +R  +PD  TY+
Sbjct: 273 RIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYN 331

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+ G  +  +L  A  +   M + G  PD  TYG  +D LCK+ RV+EA  +  S+   
Sbjct: 332 SLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEE 391

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                  +YSVL+  Y    ++++A   F +M       +   +NALI   C A   K  
Sbjct: 392 GVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEA 451

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-ADTYTMMIKM 383
             +   M   G+ P   T NI++  ++ +G+ D+A++  ++M+   E   A TY   I++
Sbjct: 452 LSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEV 511

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           +C  G++++A  +   MK +   P   T++ LI      G+   +  +L+ M +    PS
Sbjct: 512 YCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPS 571

Query: 444 GETFGKLRKLLI 455
             TF  L K L 
Sbjct: 572 HHTFLSLIKQLF 583



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 177/404 (43%), Gaps = 32/404 (7%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++N    +  Y+S+I    +       + L++ M+ + ++ +  T+   +    +  +VE
Sbjct: 320 ERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVE 379

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA   F+ + + GV+ N+  ++ L+   CK   V +A  +F+ M  +   P++ T++ L+
Sbjct: 380 EARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALI 439

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G     NL  A  +F +MV  G  P + T+ I++  + K G  D+A   ++ M S+  +
Sbjct: 440 HGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEK 499

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  Y+  +  Y    ++++A D  ++M++ G+  D   Y +LI A+ K     + + V
Sbjct: 500 PVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDV 559

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGR-------GET----------------------DE 358
           LK M      P+  T   ++  L  +       GET                      D 
Sbjct: 560 LKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDI 619

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
              +F  M K  C  D+  Y  +I   C+   L  A K+   M+ +   PS   F+ +I+
Sbjct: 620 VIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVIS 679

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             C      ++  ++EDMI  G  P  E    L   L +EG  +
Sbjct: 680 CCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETE 723



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 171/426 (40%), Gaps = 71/426 (16%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNV 156
           R Y   I+ L K  + +    L +++  + +  NV  + +++  Y +V KV+EA   F  
Sbjct: 363 RTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEK 422

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M     + N   FN L+  LC + N+++A  +FD M K    P   T++IL+    K  +
Sbjct: 423 MLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGD 482

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA--------------------- 254
              A +  ++M+ +G  P   TY   ++V C AG+V EA                     
Sbjct: 483 FDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTS 542

Query: 255 -------LG-------IVKSMDSTVCRPTSFIYSVLVHT-----YGVENRIEDAVDT--- 292
                  LG       ++KSM    C P+   +  L+       Y VE   E  V++   
Sbjct: 543 LIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSN 602

Query: 293 ---------------------FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
                                F EMEK+G   D   Y  LI   CK        ++L  M
Sbjct: 603 FGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQM 662

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC---QGG 388
             +G++P+    N +++      +  EA  +   MI  C   +        + C   + G
Sbjct: 663 QKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMI--CSGHSPQLEHCKTLICGLYEEG 720

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           E E+   V+K ++   +      + +LI+G+  +G+V +   L E+M + G   S  T+ 
Sbjct: 721 ETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYS 780

Query: 449 KLRKLL 454
            L + L
Sbjct: 781 ILTQKL 786


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 181/364 (49%), Gaps = 10/364 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            +R++++++++  + R++         L +    +R+  N++T+ I++R       ++ A
Sbjct: 118 GIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRA 177

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
           V  F+ +++  V  +   ++ L+  L K   +  A ++ D M    + PD   Y+ LL G
Sbjct: 178 VTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGG 237

Query: 210 WGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
             K     +   ++ ++V D G  P++ TY +M+D LCK GR  E   + + M +   +P
Sbjct: 238 CFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQP 297

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y +L+H       ++ A   + E+ K G++ D AMYN+L+  FC+A + +  ++  
Sbjct: 298 DVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFW 357

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQ 386
                 G+  N RT NI++ GL   G  DEA  ++  + K   C  D  T+  +I   CQ
Sbjct: 358 DSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQ 416

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G   KAF +++  ++      + ++S +INGLC+ G + D+  + E M + G +P+   
Sbjct: 417 NGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHI 476

Query: 447 FGKL 450
           +  L
Sbjct: 477 YNAL 480



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 168/324 (51%), Gaps = 5/324 (1%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           ++T  +++   +  +++ + +  +V+EA + F     +   +NL  +N ++  L  S  V
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEA-WKFWDSAGFAGLRNLRTYNIMIKGLFDSGMV 384

Query: 183 RKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
            +A E++D ++     IPD+ T+  L+ G  ++    +A  IF E   +G   D+ +Y  
Sbjct: 385 DEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M++ LC  GR+ +A+ + + MD   C+P S IY+ L+  +    R  DAV  + +M  NG
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
               V  YN LI   CKA K++    V ++M   G  P+  T   ++ GL    + D+A 
Sbjct: 505 CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDAL 564

Query: 361 RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLING 418
            ++++++ K  + D   + ++I   C  G++++A  V+  MK K+   P++ T++ L++G
Sbjct: 565 SIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRP 442
           L + G +  +  L   + E G+ P
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEP 648



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 212/489 (43%), Gaps = 51/489 (10%)

Query: 13  SGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           S  +  L  ++ +     ALDA +++  I+  +P +    AL  + +R           +
Sbjct: 84  SAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRA---------RR 134

Query: 73  FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NV 131
           F +A    F         +    +++ Y+ ++ SL           L +++R +++  + 
Sbjct: 135 FSDADAF-FASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDC 193

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD- 190
            T+  +M   A+  +++ A+   + M + GV  ++  +N LL    K+    K   ++D 
Sbjct: 194 ITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDK 253

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            +KD    P+  TY+++L+G  K        E++  MV     PD++TYGI++  LC++G
Sbjct: 254 LVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSG 313

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA-------------------- 289
            VD A  +   +  T     + +Y+ LV  +    R+++A                    
Sbjct: 314 DVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNI 373

Query: 290 ----------VDTFLEM----EKN-GILADVAMYNALIGAFCKANKFKN-VYRVLKDMNS 333
                     VD  +E+    EK+   + D   +  LI   C+ N F N  + + ++   
Sbjct: 374 MIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQ-NGFANKAFTIFEEARV 432

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEK 392
            G   +  + + ++NGL   G   +A +V+ +M K  C+ ++  Y  +I  FCQ      
Sbjct: 433 SGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSD 492

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A +++  M      P++ T++ LI+GLC      ++  +  +M+E G  P   T+G L +
Sbjct: 493 AVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIR 552

Query: 453 LLIKEGRED 461
            L  + + D
Sbjct: 553 GLFSDKKID 561



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 154/362 (42%), Gaps = 43/362 (11%)

Query: 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLS 174
           + +L+  +R +   +     +++  ++R    + A+  F  +    G    + + N LL 
Sbjct: 68  LLNLLPRLRHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLD 127

Query: 175 ALCKSKNVRKAQEIFDCMKD-----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           A  +++    A   F  +       R  P+ +TY+I+L       +L RA  +F  +   
Sbjct: 128 AFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRR 187

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
              PD +TY  ++  L K  R+D AL ++  M  +  +P    Y+ L+         E  
Sbjct: 188 QVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKV 247

Query: 290 VDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           +  + ++ K+ G   ++A YN ++   CK  +FK V  V + M +  + P+  T  I+++
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307

Query: 349 GLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWK---YMKLKR 404
           GL   G+ D A RV+  +IK     DA  Y  ++K FCQ G +++A+K W    +  L+ 
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN 367

Query: 405 F--------------------------------IPSMHTFSVLINGLCDKGIVSDSCVLL 432
                                            IP   TF  LI+GLC  G  + +  + 
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 433 ED 434
           E+
Sbjct: 428 EE 429



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 92/185 (49%), Gaps = 3/185 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I+ L K  +YQ    +   M       ++ T+  ++R     +K+++A+  +
Sbjct: 508 TVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIW 567

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGK 212
             +   G+  ++   N L+  LC +  V +A  +F  MK++    P+  TY+ L++G  +
Sbjct: 568 KQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYE 627

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              + +A  ++  + + G  PDI++Y   +  LC   R+ E + ++  + S    PT   
Sbjct: 628 TGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVIT 687

Query: 273 YSVLV 277
           +++LV
Sbjct: 688 WNILV 692



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 39/256 (15%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLS--SPKVVLDTALDQSGIRVSP 63
           H  N +ISG   F + Y +S       DA +  SK+  +  SP V+    L     +   
Sbjct: 475 HIYNALISG---FCQVYRTS-------DAVRIYSKMADNGCSPTVITYNTLIDGLCKA-- 522

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESL---AKIRQYQIMWD- 118
                  EK++ A ++A       E  +N +   +  Y S+I  L    KI     +W  
Sbjct: 523 -------EKYQEASSVA------REMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQ 569

Query: 119 -LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSAL 176
            L   ++   M++     I++       KV+EA++ F+ M +K     NL  +N L+  L
Sbjct: 570 ILYKGLKVDVMMH----NILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGL 625

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            ++  + KA  ++  + +D   PD  +Y+  ++G      +    ++  E++  G  P +
Sbjct: 626 YETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTV 685

Query: 236 VTYGIMVDVLCKAGRV 251
           +T+ I+V  + K G +
Sbjct: 686 ITWNILVRAVIKYGPI 701



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 311 LIGAFCKA---NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-GRGETDE-------A 359
           ++ AF +A   +   + +R L  +   G  P  R+ N +L+  +  R  +D        +
Sbjct: 89  VLSAFSRAIMPDAALDAFRALPSI--LGCNPGIRSHNALLDAFVRARRFSDADAFFASLS 146

Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +  F R I     +  TY ++++  C  G+L++A  ++  ++ ++  P   T+S L+ GL
Sbjct: 147 HGAFGRRIA---PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGL 203

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEP 477
             +  +  +  LL++M   G++P    +  L     K G  E V++   +    LVK+P
Sbjct: 204 AKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDK----LVKDP 258


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 199/413 (48%), Gaps = 25/413 (6%)

Query: 16  ISFLRRYNSSEPSTEALDAAKSISKIM-----LSSPKVVLDTALDQSGIRVSPEIVEDVL 70
           + F     +  PS+  L+    I  I+       S +++L + L +  I +  ++ E +L
Sbjct: 77  LEFFNWVQTENPSSHTLETHSMILHILTKNRKFKSAELILKSVLVKGFIDLPDKLFEAIL 136

Query: 71  EKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
             +R       C           + S R + S+ ++LA +++++   D    M+    L 
Sbjct: 137 YSYR------MC-----------DSSPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLP 179

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            VE+    +     + +V+ A+  +  M++  ++ N+   N ++ A CKS  + KA ++F
Sbjct: 180 TVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVF 239

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+   I P+  +Y+ L+ G+ +   L  A ++   M   G   ++VT+  ++D  CK 
Sbjct: 240 EEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKE 299

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++ EA  +   M      P +  Y+ L++ +      E     + EM +NG+ AD+  Y
Sbjct: 300 GKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTY 359

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           NALI   CK  K K    ++K+++ + + PN+ T + +++G   R  +D A+++++ M++
Sbjct: 360 NALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVR 419

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           + C  +  T+ M++  FC+  + E AF V   M  + F P     S + +GLC
Sbjct: 420 IGCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEIYHGLC 472



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 184/400 (46%), Gaps = 20/400 (5%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L      ++P  V+ +L K +    L+  FF W + +    H++  +  ++  L K R++
Sbjct: 50  LTSLSTHLTPFRVKHILLKIQKDHVLSLEFFNWVQTENPSSHTLETHSMILHILTKNRKF 109

Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV-YTFNVMQKYGVTQNLAAFNGL 172
           +    ++ ++  K  +++              K+ EA+ Y++ +        +   F+ L
Sbjct: 110 KSAELILKSVLVKGFIDLP------------DKLFEAILYSYRM-----CDSSPRVFDSL 152

Query: 173 LSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
              L   K  R A + F  MK   F+P  ++ +  L        +  A   ++EM     
Sbjct: 153 FKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRI 212

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P++ T  +++   CK+G++++A+ + + M+S    P    Y+ L+  Y  +  +  AV 
Sbjct: 213 SPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVK 272

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
               M   G+ A+V  +N+LI  FCK  K     +V  +M    VAPN+ T N ++NG  
Sbjct: 273 LKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHS 332

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G ++   R++  M +   +AD  TY  +I   C+ G+ +KA  + K +  +  +P+  
Sbjct: 333 QMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNAS 392

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           TFS LI+G C +     +  L + M+  G  P+ +TF  L
Sbjct: 393 TFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNML 432



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           +R++ A+  + EM +  I  +V   N ++ AFCK+ K +   +V ++M S G++PN  + 
Sbjct: 195 HRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSY 254

Query: 344 NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N ++ G   +G  + A ++   M  K  EA+  T+  +I  FC+ G+L +A KV+  MK+
Sbjct: 255 NTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKV 314

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
               P+  T++ LING    G       L E+M   G++    T+  L   L KEG+
Sbjct: 315 LNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGK 371



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 3/155 (1%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           ++++L        KF+N       M   G  P   +CN  L+ L+     D A   ++ M
Sbjct: 148 VFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEM 207

Query: 367 IKLCEADADTYT--MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
            + C    + YT  M+++ FC+ G+LEKA +V++ M+     P+  +++ LI G C KG+
Sbjct: 208 -RRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGL 266

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           ++ +  L   M  KG+  +  TF  L     KEG+
Sbjct: 267 LNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGK 301


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 183/373 (49%), Gaps = 22/373 (5%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+S++  L K ++      L+  M+   ++ NV T+  +++        + A   F +M
Sbjct: 384 TYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMM 443

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY-SILLEGWGKDPNL 216
           ++ G+  +  A+  L  ALCK+    +A+E +  +  + +  +K Y + L++G+ K  N 
Sbjct: 444 EQNGLKPDEHAYAVLTDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNT 500

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +   M+D GC PD  TY +++  LCK  R++EAL I+  M     + T F Y++L
Sbjct: 501 DFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTIL 560

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     E + + A   + EM  +G       Y   I ++CK  + ++   ++  M  +GV
Sbjct: 561 IDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 620

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG------- 388
           AP+  T NI+++G    G  D A+   +RM+   CE +  TY +++K   +G        
Sbjct: 621 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSV 680

Query: 389 ---------ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
                    EL+  +++ + M      P++ T+S LI G C  G + ++C+LL+ M  KG
Sbjct: 681 DTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKG 740

Query: 440 IRPSGETFGKLRK 452
           + P+ + +  L K
Sbjct: 741 LSPNEDIYTLLIK 753



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 204/426 (47%), Gaps = 40/426 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+     +VRA+  +I  L K  +      L +AM    ++ +V T+  ++  Y+++ ++
Sbjct: 165 KRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRM 224

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207
            +A+    +M+K G   +   +N L+  LC  K     + + + +K+ F P   T++ L+
Sbjct: 225 NDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLI 284

Query: 208 EGW----------------------------GKDPN-------LPRAREIFREMVDTGCN 232
            G+                            GK  N       L  A+E+  E+   G  
Sbjct: 285 NGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLV 344

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P+++TY  ++D  CK+G+VD AL ++K M+   C+P ++ Y+ L++    + ++  A+  
Sbjct: 345 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 404

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             +M+K+GI+ +V  Y  L+   C  + F N +R+ + M   G+ P+     ++ + L  
Sbjct: 405 LTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 464

Query: 353 RGETDEAYR-VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G  +EAY  + R+ + L +     YT +I  F + G  + A  + + M  +   P  +T
Sbjct: 465 AGRAEEAYSFIVRKGVALTKV---YYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 521

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +SVL++ LC +  ++++  +L+ M  +GI+ +   +  L   +++EG+ D  K +  +M 
Sbjct: 522 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 581

Query: 472 LLVKEP 477
               +P
Sbjct: 582 SSGHKP 587



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 54/423 (12%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-----NVETFCI--IMRKYARVQKVEEAV 151
            Y++MI+S  K        DL  A R  R+L       ETF    ++  Y R  ++ +A 
Sbjct: 70  TYNTMIKSYCK------EGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 123

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGW 210
           + F +M   G  +N  ++  L+  LC +K VRKA  +F  MK D   P+ + ++ L+ G 
Sbjct: 124 WLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGL 183

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K   +  AR +F  M   G  P ++TY  M+    K GR+++AL I + M+   C P  
Sbjct: 184 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 243

Query: 271 FIYSVLVHTYGV-ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR--- 326
           + Y+ L+  YG+ + + E+A +      K G    V  +  LI  +C A KF +  R   
Sbjct: 244 WTYNTLI--YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKN 301

Query: 327 --------------------------------VLKDMNSKGVAPNSRTCNIILNGLIGRG 354
                                           +L ++++ G+ PN  T   I++G    G
Sbjct: 302 KMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSG 361

Query: 355 ETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           + D A  V + M +  C+ +A TY  ++    +  +L KA  +   M+    IP++ T++
Sbjct: 362 KVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYT 421

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
            L+ G CD+    ++  L E M + G++P    +  L   L K GR E+   F+  K   
Sbjct: 422 TLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVA 481

Query: 473 LVK 475
           L K
Sbjct: 482 LTK 484



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 167/363 (46%), Gaps = 6/363 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           ++ +  +I SL K  + +   +L+N +    ++ NV T+  I+  Y +  KV+ A+    
Sbjct: 312 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 371

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
           +M++ G   N   +N L+  L K K + KA  +   M KD  IP+  TY+ LL+G   + 
Sbjct: 372 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 431

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +   A  +F  M   G  PD   Y ++ D LCKAGR +EA   +      +   T   Y+
Sbjct: 432 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVAL---TKVYYT 488

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +      + A      M   G   D   Y+ L+ A CK  +      +L  M+ +
Sbjct: 489 TLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLR 548

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKA 393
           G+        I+++ ++  G+ D A R++  M        A TYT+ I  +C+ G LE A
Sbjct: 549 GIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDA 608

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   M+ +   P + T+++LI+G    G +  +   L+ M+     P+  T+  L K 
Sbjct: 609 EDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKH 668

Query: 454 LIK 456
           L+K
Sbjct: 669 LLK 671



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 20/388 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           S + Y+  + SLA+    + M  + + +    +L +  T+  +++ Y +   +  A   F
Sbjct: 32  SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 91

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKDRFIPDSKTYSILLE 208
            ++ + G+       N L+   C++  +RKA  +F       C ++ +     +Y+IL++
Sbjct: 92  RLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEY-----SYTILIQ 146

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G      + +A  +F  M   GC+P++  +  ++  LCK+GRV +A  +  +M      P
Sbjct: 147 GLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVP 206

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           +   Y+ ++  Y    R+ DA+     MEKNG   D   YN LI   C   K +    +L
Sbjct: 207 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELL 265

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
            +   +G  P   T   ++NG     + D+A R+  +M+   C+ D   +  +I    + 
Sbjct: 266 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 325

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
             L++A ++   +     +P++ T++ +I+G C  G V  +  +L+ M   G +P+  T+
Sbjct: 326 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 385

Query: 448 GKLRKLLIKEGREDVLKFLQEKMNLLVK 475
             L   L+K+      K L + M LL K
Sbjct: 386 NSLMYGLVKD------KKLHKAMALLTK 407



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 127/309 (41%), Gaps = 29/309 (9%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ AY  +I+ + +  ++     + N M +     +  T+ + +  Y +  ++E+A    
Sbjct: 553 TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLI 612

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-----PDSKTYSILLEG 209
             M++ GV  ++  +N L+        + +A   F  +K R +     P+  TY +LL+ 
Sbjct: 613 LKMEREGVAPDVVTYNILIDGCGHMGYIDRA---FSTLK-RMVGASCEPNYWTYCLLLKH 668

Query: 210 WGKDPNLPRAR-----------------EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
             K  NL   R                 ++   MV  G NP + TY  ++   CKAGR++
Sbjct: 669 LLKG-NLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLE 727

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++  M      P   IY++L+         E A+     M + G    +  Y  L+
Sbjct: 728 EACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLV 787

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
              C    F+ V  +  D+   G   +     I+ +GL+  G  D  +++   M K  C 
Sbjct: 788 VGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCC 847

Query: 372 ADADTYTMM 380
             + TY ++
Sbjct: 848 ISSQTYALV 856


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 166/341 (48%), Gaps = 36/341 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  + I +    R  K+EEA   F +M+K+GV  NL  ++ ++   CK+ NVR+A  ++
Sbjct: 233 NVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLY 292

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + +    +P+   +  L++G+ K   L  AR +F  MV  G +P++  Y  ++   CK+
Sbjct: 293 KEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKS 352

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G + EA+G++  M+S    P  F Y++L++   +E+++ +A   F +M+   I    A Y
Sbjct: 353 GNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATY 412

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N+LI  +CK    +    +  +M + GV P     NII                      
Sbjct: 413 NSLIHGYCKEYNMEQALDLCSEMTASGVEP-----NII---------------------- 445

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
                  T++ +I  +C   +++ A  ++  M +K  +P + T++ LI+    +  + ++
Sbjct: 446 -------TFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEA 498

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQE 468
             L  DM+E GI P+  TF  L     KEGR  V + F QE
Sbjct: 499 LRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQE 539



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 157/387 (40%), Gaps = 75/387 (19%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y +MI+   K    +  + L   +    +L NV  F  ++  + + +++  A   F
Sbjct: 268 NLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLF 327

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKN--------------------------------- 181
             M K+GV  NL  +N L+   CKS N                                 
Sbjct: 328 VHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIE 387

Query: 182 --VRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             V +A  +F  MK +R  P S TY+ L+ G+ K+ N+ +A ++  EM  +G  P+I+T+
Sbjct: 388 DQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITF 447

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++D  C    +  A+G+                                   + EM  
Sbjct: 448 STLIDGYCNVRDIKAAMGL-----------------------------------YFEMTI 472

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI+ DV  Y ALI A  K    K   R+  DM   G+ PN  T   +++G    G    
Sbjct: 473 KGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSV 532

Query: 359 AYRVFRR--MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           A   ++     + C      +T +I+  CQ G + +A + +  M+     P + ++  ++
Sbjct: 533 AIDFYQENNQQRSCWNHVG-FTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSML 591

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            G   +  ++D+ +L  DMI+ GI P+
Sbjct: 592 KGHLQEKRITDTMMLQCDMIKTGILPN 618



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 39/182 (21%)

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           + +++ LI  F +   F+    V ++M     +P+S+ C  ILNGL+ R   D  +  ++
Sbjct: 132 IGVFSLLIMEFLEMGLFEEALWVSREMK---CSPDSKACLSILNGLVRRRRFDSVWVDYQ 188

Query: 365 RMI---------------KLC---------------------EADADTYTMMIKMFCQGG 388
            MI               + C                     + +   YT+ I   C+  
Sbjct: 189 LMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDN 248

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++E+A K+++ MK    +P+++T+S +I+G C  G V  +  L ++++   + P+   FG
Sbjct: 249 KMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFG 308

Query: 449 KL 450
            L
Sbjct: 309 TL 310


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 192/409 (46%), Gaps = 5/409 (1%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVE 132
           RN G            +++    + +Y+++I  L K ++ +    L+  M       N  
Sbjct: 10  RNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSV 69

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T   +M    +  +++EA+     M+K G   ++  +  L+S  C + N+ + +E+FD M
Sbjct: 70  TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM 129

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             + I  +  TYS L+ G  +      A  +   M + G +PD+VTY  ++D LCK GR 
Sbjct: 130 LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRA 189

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A+ ++  M      P++  Y+VL+     E  + DA      M + G  ADV  YN L
Sbjct: 190 THAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTL 249

Query: 312 IGAFCKANKFKNVYRVLKDM--NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
           +   C   K     ++   M  N   + PN  T N+++ GL   G   +A ++ R+M+K 
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 370 CE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               +  TY M++    + G++++A ++WK +    F+P+  T+S+LI+G C   +++ +
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 369

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             L  +M   G+ P+   +  L   L KEG  +  K L ++M     EP
Sbjct: 370 KGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEP 418



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 186/390 (47%), Gaps = 7/390 (1%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145
           A K++ ++  V  Y ++I             +L + M  K +  NV T+  ++    R+ 
Sbjct: 93  AMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLG 152

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           + +EA    N M ++G+  ++  + GL+  LCK      A ++ + M ++   P + TY+
Sbjct: 153 QWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 212

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DS 263
           +LL G  K+  +  A +I R M++ G   D+VTY  ++  LC  G+VDEAL +  SM D+
Sbjct: 213 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272

Query: 264 TVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
             C  P  F +++L+     E R+  AV    +M K G   ++  YN L+G   KA K K
Sbjct: 273 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIK 332

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF--RRMIKLCEADADTYTMM 380
               + K +   G  PNS T +I+++G       + A  +F   R   L  A  D  T+M
Sbjct: 333 EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 392

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             + C+ G LE+A  +++ M      P + +F+ +I+G    G       L   M+E G+
Sbjct: 393 ASL-CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 451

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           RP   TF  L   L K G  D  K   E+M
Sbjct: 452 RPDALTFSTLINRLSKLGELDEAKSALERM 481



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 163/328 (49%), Gaps = 4/328 (1%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I+++   R   V EA+     M +  V+ ++ ++N L++ LCK+K +++A  +   M+  
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
              P+S T + L++G  KD  +  A E+   M   G + D+V YG ++   C  G +D  
Sbjct: 63  GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 122

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             +   M           YS LVH      + ++A      M ++GI  DV  Y  LI  
Sbjct: 123 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 182

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
            CK  +  +   +L  M  KG  P++ T N++L+GL   G   +A+++ R MI K  +AD
Sbjct: 183 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYM--KLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
             TY  ++K  C  G++++A K++  M        P++ TF++LI GLC +G ++ +  +
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              M++KG   +  T+  L    +K G+
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGK 330



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 136/259 (52%), Gaps = 1/259 (0%)

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +I+L+G  ++  +  A  + REM     +PDIV+Y  +++ LCKA ++ EA+G++  M++
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
             C P S   + L+     + R+++A++    M+K G  ADV +Y  LI  FC       
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
              +  +M  KG++ N  T + +++GL   G+  EA  V   M +     D  TYT +I 
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+ G    A  +   M  K   PS  T++VL++GLC +G+V D+  +L  MIEKG + 
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 241

Query: 443 SGETFGKLRKLLIKEGRED 461
              T+  L K L  +G+ D
Sbjct: 242 DVVTYNTLMKGLCDKGKVD 260



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 144/295 (48%), Gaps = 4/295 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            N +L  LC++  V +A  +   M  + + PD  +Y+ L+ G  K   L  A  +  EM 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             GC P+ VT   ++D LCK GR+DEA+ ++++M          +Y  L+  +     ++
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
              + F EM   GI A+V  Y+ L+   C+  ++K    VL  M   G+ P+  T   ++
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 348 NGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +GL   G    A  +   M++  E  ++ TY +++   C+ G +  AFK+ + M  K   
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK 240

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMI--EKGIRPSGETFGKLRKLLIKEGR 459
             + T++ L+ GLCDKG V ++  L   M   E  + P+  TF  L   L KEGR
Sbjct: 241 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGR 295



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 169/359 (47%), Gaps = 7/359 (1%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM--RTKRMLNVETFCIIMRKYARV 144
           A  +      V  Y  +I+ L K  +     DL+N M  + +   NV T+ +++    + 
Sbjct: 163 AMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNV-TYNVLLSGLCKE 221

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSK 201
             V +A     +M + G   ++  +N L+  LC    V +A ++F+ M D      P+  
Sbjct: 222 GLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVF 281

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           T+++L+ G  K+  L +A +I R+MV  G   ++VTY +++    KAG++ EA+ + K +
Sbjct: 282 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 341

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                 P SF YS+L+  +     +  A   F EM  +G+   +  YN L+ + CK    
Sbjct: 342 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 401

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           +    + ++M +    P+  + N +++G +  G+      +  +M+++    DA T++ +
Sbjct: 402 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 461

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           I    + GEL++A    + M    F P    +  L+ GL  KG  ++   LL  M  KG
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 520



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 11/339 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           ++  E S   Y+ ++  L K    I  ++I+  ++      +  +V T+  +M+      
Sbjct: 201 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMI---EKGKKADVVTYNTLMKGLCDKG 257

Query: 146 KVEEAVYTFNVM--QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKT 202
           KV+EA+  FN M   +  +  N+  FN L+  LCK   + KA +I   M K     +  T
Sbjct: 258 KVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT 317

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y++LL G  K   +  A E++++++D G  P+  TY I++D  CK   ++ A G+   M 
Sbjct: 318 YNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMR 377

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           +    P  F Y+ L+ +   E  +E A   F EM       D+  +N +I    KA  F+
Sbjct: 378 THGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 437

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMI 381
            V  +   M   G+ P++ T + ++N L   GE DEA     RM+      DA  Y  ++
Sbjct: 438 FVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLL 497

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           K     G+  +   +   M  K  +      S ++  LC
Sbjct: 498 KGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 536



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
            KI++   +W  V  +    + N  T+ I++  + +++ +  A   F  M+ +G+   L 
Sbjct: 329 GKIKEAMELWKQV--LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALF 386

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +N L+++LCK  ++ +A+ +F  M +    PD  +++ +++G  K  +    +E+  +M
Sbjct: 387 DYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKM 446

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           V+ G  PD +T+  +++ L K G +DEA   ++ M ++   P + +Y  L+     +   
Sbjct: 447 VEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDT 506

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
            + ++   +M   G + D  + + ++   C + +  +V  +L           S +CN +
Sbjct: 507 TEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNEL 566

Query: 347 L 347
           L
Sbjct: 567 L 567


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 185/375 (49%), Gaps = 9/375 (2%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           ++I  L + R+    ++L   M  +       +V T+  ++  + +   +E+A+    VM
Sbjct: 156 ALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM 215

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +      N+  ++ LL  LCK+ ++ +A ++F  M  +  +P+  TY+ L+ G      +
Sbjct: 216 EGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKV 275

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             AR +  EM  T C  D V+Y  ++D  C+ GR++EA  + K M +  C P    Y+ L
Sbjct: 276 DAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCL 335

Query: 277 VHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           V  +   +R+E+A      M+   GI  DV  Y+ ++  + +A +F      +++M ++ 
Sbjct: 336 VRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 395

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
           VAPN+ T + +++GL   G  + A  V + + K    D  TYT++I+  C     E+A  
Sbjct: 396 VAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK---PDVVTYTIVIEGLCGTDRTEEALT 452

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + M  KR  PS+ TF+ +I  LC  G + ++  LL  M   G+ P   T+  L +   
Sbjct: 453 LLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFS 512

Query: 456 KEGREDVLKFLQEKM 470
           + GR ++   L E M
Sbjct: 513 RTGRMEIAYELFEVM 527



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 202/455 (44%), Gaps = 56/455 (12%)

Query: 56  QSGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           + G  V+P++V    V+  F   G +  A    +    +      V  Y S+++ L +  
Sbjct: 36  RDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDG 95

Query: 112 QYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
           +     ++V  M+ K    VE    TF  ++  +   +KV+EA+  +  +       +  
Sbjct: 96  KMDRACEMVREMKLK---GVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAV 152

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGKDPNLPRAREIF 223
           + + L++ LC+ + + +A E+F  M+ R    + PD  TY+ L++G+ K  NL +A ++ 
Sbjct: 153 SSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKML 212

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             M    C P++VTY  ++  LCKAG +D+AL + + M S  C P    Y+ L+H     
Sbjct: 213 GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 272

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           ++++ A     EM      AD   YNAL+  +C+  + +   ++ K+M +K   P+  T 
Sbjct: 273 HKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITY 332

Query: 344 NIILNGLIGRGETDEA--------------------------YRVFRRMIKLCE------ 371
             ++ G       +EA                          Y   +R ++  E      
Sbjct: 333 TCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMI 392

Query: 372 -----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 +A TY+ +I   C+ G +  A +V K +      P + T++++I GLC      
Sbjct: 393 ARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTE 448

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           ++  LLE+M+ K + PS  TF  +   L + G  D
Sbjct: 449 EALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMD 483



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 43/361 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           N  T+ +++    + +   +A      M+    V  +L  ++ +++  CK   + +A EI
Sbjct: 8   NERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 189 FDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
              M  +D   PD  TY+ +++G  +D  + RA E+ REM   G  PD  T+  ++   C
Sbjct: 68  LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME--KNGIL-A 303
            A +VDEAL + K + ++ CR  +   S L+     E RI +A + F EME  ++G    
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           DV  Y ALI  FCK+   +   ++L  M  +   PN  T + +L+GL   G+ D+A  +F
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 364 RRMIK------------------------------------LCEADADTYTMMIKMFCQG 387
           RRM                                       C AD  +Y  ++  +C+ 
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM-IEKGIRPSGET 446
           G +E+A +++K M  K  +P   T++ L+ G C+   + ++  LLE+M    GI P   T
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 367

Query: 447 F 447
           +
Sbjct: 368 Y 368



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 170/391 (43%), Gaps = 50/391 (12%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y S++  L K        DL   M +K  + NV T+  ++       KV+ A    
Sbjct: 223 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKDRFI----------- 197
           + M       +  ++N LL   C+   + +A+++F       C+ DR             
Sbjct: 283 DEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNA 342

Query: 198 --------------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
                               PD  TYSI++ G+ +      A E  +EM+     P+ VT
Sbjct: 343 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++D LCKAGRV+ A+ ++K++D    +P    Y++++      +R E+A+    EM 
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMV 458

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
              +   V  +N++IGA C+       +++L  M + G+ P   T   +L G    G  +
Sbjct: 459 NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRME 518

Query: 358 EAYRVF---RRMIKLCEADAD-----TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
            AY +F   RR  K   + A+      ++ +I+  C+  E++KA  V + ++ +   P+ 
Sbjct: 519 IAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAE 578

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
                +++GL   G   ++  L+  + + G+
Sbjct: 579 EDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 144/289 (49%), Gaps = 12/289 (4%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDVLCKAGR 250
           M++   P+ +TY++++ G  K     +A E+ +EM D     PD+VTY  +++  CK G 
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 251 VDEALGIVKSMDSTVCR----PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           +D A  I++ M   V R    P    Y+ +V     + +++ A +   EM+  G+  D  
Sbjct: 61  MDRACEILREM---VTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKF 117

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            ++ALI  +C A K     ++ K++ +     ++ + + ++ GL       EAY +F+ M
Sbjct: 118 TFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEM 177

Query: 367 ----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                   + D  TYT +I  FC+ G LEKA K+   M+ ++ +P++ T+S L++GLC  
Sbjct: 178 EMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKA 237

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           G +  +  L   M  KG  P+  T+  L   L    + D  + L ++M 
Sbjct: 238 GDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 195/409 (47%), Gaps = 40/409 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K + +  +V  Y ++I    K   ++ +  L+  M ++ + +NV+ +  I+    +   +
Sbjct: 266 KLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHI 325

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
            +AV T   M + G   ++  +N L+S  C+   V +A ++ +  +    +P+  +Y+ L
Sbjct: 326 VKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPL 385

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL----------- 255
           +  + K     RA     EM + G  PD+VTYG +V  L  AG VD AL           
Sbjct: 386 IHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGV 445

Query: 256 ----GIVKSMDSTVCR--------------------PTSFIYSVLVHTYGVENRIEDAVD 291
               GI   + S +C+                    P +F+Y+ LV  +     +++A  
Sbjct: 446 FPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARK 505

Query: 292 TF-LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
            F L +EK G+   +  YNA+I  +CK    K+    +  M  + +AP+  T + +++G 
Sbjct: 506 LFELTIEK-GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGY 564

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
           + + + D A ++FR M+K+ C+ +  TYT +I  FC+ G+L ++ K+++ M+    +P++
Sbjct: 565 VKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNV 624

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            T+S+LI   C +  + D+    E+M+     P+  TF  L     K G
Sbjct: 625 VTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNG 673



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 201/427 (47%), Gaps = 40/427 (9%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVR--AYHSMIESL 107
           L T   +S +  S ++   VL++ R+   L   FF W  + Q Y   +   AY S+++ L
Sbjct: 48  LQTRFSESEVLAS-DVAHLVLDRIRDV-ELGLKFFDWVSRGQ-YSGPINGFAYSSLLKLL 104

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNV-ETFCIIMRKYARVQKVEEAV--YTFNVMQKYGVTQ 164
           A+ R +  M  ++  MR + M    E   I+++ Y+    VE+A+  Y F V++ Y    
Sbjct: 105 ARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYF-VLKTYTYFP 163

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           ++ A N LL+ L K   +  A++++D M +            ++G G             
Sbjct: 164 DVIACNSLLNMLVKLGRIEIARKLYDEMLE------------IDGAGD------------ 199

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
             VD        +  IMV  LCK G+++E   +++      C P    Y+ L+  Y  + 
Sbjct: 200 RCVDN------YSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKG 253

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            +E A   F+E++  G L  V  Y A+I  FCK   FK + R+L +MNS+G+  N +  N
Sbjct: 254 DMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYN 313

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            I++     G   +A      MI+  C+ D  TY  +I   C+ G++ +A ++ +    K
Sbjct: 314 TIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGK 373

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
             +P+  +++ LI+  C +G    +   L +M E+G +P   T+G L   L+  G  DV 
Sbjct: 374 GLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVA 433

Query: 464 KFLQEKM 470
             ++EKM
Sbjct: 434 LTIREKM 440



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 193/443 (43%), Gaps = 46/443 (10%)

Query: 61  VSP--EIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           +SP  E +  V++ + ++G +  A   + +  K   Y   V A +S++  L K+ + +I 
Sbjct: 125 MSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIA 184

Query: 117 WDLVNAM-----RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
             L + M        R ++  + CI+++   +  K+EE           G   N+  +N 
Sbjct: 185 RKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNT 244

Query: 172 LLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGK------------------ 212
           L+   CK  ++  A  +F  +K + F+P  +TY  ++ G+ K                  
Sbjct: 245 LIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRG 304

Query: 213 -----------------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
                              ++ +A E    M++ GC PDIVTY  ++   C+ G+V EA 
Sbjct: 305 LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEAD 364

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++        P  F Y+ L+H Y  +   + A +  +EM + G   D+  Y AL+   
Sbjct: 365 QLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGL 424

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
             A +      + + M  +GV P++   NI+++GL  + +   A  +   M+ +    DA
Sbjct: 425 VVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDA 484

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y  ++  F + G L++A K+++    K   P +  ++ +I G C  G++ D+   +  
Sbjct: 485 FVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINR 544

Query: 435 MIEKGIRPSGETFGKLRKLLIKE 457
           M ++ + P   T+  +    +K+
Sbjct: 545 MKKRHLAPDEFTYSTVIDGYVKQ 567



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 153/343 (44%), Gaps = 16/343 (4%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++       +V+ A+     M + GV  +   +N L+S LCK   +  A+ +   M
Sbjct: 416 TYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEM 475

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            D+  +PD+  Y+ L++G+ ++ NL  AR++F   ++ G NP IV Y  M+   CK G +
Sbjct: 476 LDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMM 535

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A+  +  M      P  F YS ++  Y  ++ ++ A   F EM K     +V  Y +L
Sbjct: 536 KDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSL 595

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FC+        ++ ++M + G+ PN  T +I++       +  +A   F  M+   C
Sbjct: 596 INGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKC 655

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR--------------FIPSMHTFSVLI 416
             +  T+  ++  F + G    + K  ++ + K+              + P    ++ ++
Sbjct: 656 VPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSIL 715

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             LC  G+   +  L   M  KG  P   +F  L   +  EGR
Sbjct: 716 ICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGR 758



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 50/275 (18%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           +  ++  + R   ++EA   F +  + G+   +  +N ++   CK   ++ A    + MK
Sbjct: 487 YATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMK 546

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            R + PD  TYS +++G+ K  +L  A+++FREMV   C P++VTY  +++  C+ G + 
Sbjct: 547 KRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLH 606

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM---------------- 296
            +L I + M +    P    YS+L+ ++  E ++ DA   F EM                
Sbjct: 607 RSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLV 666

Query: 297 ---EKNGILA------------------------------DVAMYNALIGAFCKANKFKN 323
               KNG  A                                A YN+++   C+   F+ 
Sbjct: 667 NGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRT 726

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
             ++   M SKG  P+S +   +L+G+   G + E
Sbjct: 727 ALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKE 761



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD---ADTYT--MMIKMFCQGGELEK 392
           P+   CN +LN L+  G  + A +++  M+++  A     D Y+  +M+K  C+ G+LE+
Sbjct: 163 PDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEE 222

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             K+ +    +  IP++  ++ LI+G C KG +  +  L  ++  KG  P+ ET+G +  
Sbjct: 223 GRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIIN 282

Query: 453 LLIKEGREDVLKFLQEKMN 471
              K+G    +  L  +MN
Sbjct: 283 GFCKKGDFKAIDRLLMEMN 301


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 167/334 (50%), Gaps = 1/334 (0%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           + +  +     E++Y    +   G   ++     L+  L  SK + KA ++   +++   
Sbjct: 64  LSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH 123

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD   Y+ ++ G+ +   +  A ++   M + G +PDIVTY I++  LC  G +D AL  
Sbjct: 124 PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEF 183

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              +    C+PT   Y++L+    ++  I++A+    EM +  +  D+  YN++I   C+
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR 243

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
                  ++++  ++SKG AP+  T NI+L GL+ +G+ +  Y +   M+ + CEA+  T
Sbjct: 244 EGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVT 303

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+++I   C+ G++E+   + K MK K   P  + +  LI  LC +G V  +  +L+ MI
Sbjct: 304 YSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMI 363

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             G  P    +  +   L K+ R D    + EK+
Sbjct: 364 SDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 397



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 176/364 (48%), Gaps = 5/364 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K + +   +  Y+ +I SL          +  N +  +     V T+ I++        +
Sbjct: 153 KNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGI 212

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           +EA+   + M +  +  ++  +N ++  +C+   V +A +I   +  + + PD  TY+IL
Sbjct: 213 DEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNIL 272

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L G           E+  +MV  GC  ++VTY +++  +C+ G+V+E +G++K M     
Sbjct: 273 LRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGL 332

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P  + Y  L+     E R++ A++    M  +G + D+  YN ++   CK  +      
Sbjct: 333 KPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALS 392

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           + + +   G +PN+ + N + + L   G    A  +   M+ K  + D  TY  +I   C
Sbjct: 393 IFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLC 452

Query: 386 QGGELEKAFKVWKYMKLK--RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + G +++A ++   M+++     PS+ ++++++ GLC    VSD+  +L  M++KG RP+
Sbjct: 453 RDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPN 512

Query: 444 GETF 447
             T+
Sbjct: 513 ETTY 516



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 6/363 (1%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           H +  S    +  Q+M  L N        ++  +  I+  + R  +++ A    + M+  
Sbjct: 100 HGLFTSKTIDKAIQVMHILENHGHP----DLIAYNAIITGFCRANRIDSAYQVLDRMKNK 155

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G + ++  +N L+ +LC    +  A E  +  +K+   P   TY+IL+E       +  A
Sbjct: 156 GFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEA 215

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
            ++  EM++    PD+ TY  ++  +C+ G VD A  I+ S+ S    P    Y++L+  
Sbjct: 216 MKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRG 275

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
              + + E   +   +M   G  A+V  Y+ LI + C+  K +    +LKDM  KG+ P+
Sbjct: 276 LLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPD 335

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWK 398
               + ++  L   G  D A  V   MI   C  D   Y  ++   C+    ++A  +++
Sbjct: 336 GYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFE 395

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +      P+  +++ + + L   G    +  ++ +M++KG+ P G T+  L   L ++G
Sbjct: 396 KLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDG 455

Query: 459 RED 461
             D
Sbjct: 456 MVD 458



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 137/301 (45%), Gaps = 4/301 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
            + Y   V  Y+ ++  L    +++  ++L++ M  +    NV T+ +++    R  KVE
Sbjct: 259 SKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVE 318

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           E V     M+K G+  +   ++ L++ALCK   V  A E+ D M  D  +PD   Y+ +L
Sbjct: 319 EGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTIL 378

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               K      A  IF ++ + GC+P+  +Y  M   L   G    ALG++  M      
Sbjct: 379 ACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVD 438

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTF--LEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           P    Y+ L+     +  +++A++    +EME +     V  YN ++   CK ++  +  
Sbjct: 439 PDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAI 498

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
            VL  M  KG  PN  T   ++ G+   G  ++A  +   ++ +      ++  + K FC
Sbjct: 499 EVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAISEHSFERLYKTFC 558

Query: 386 Q 386
           +
Sbjct: 559 K 559



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 111/229 (48%), Gaps = 5/229 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  +I +L K  +  +  ++++ M +   + ++  +  I+    + ++ +EA+  F  + 
Sbjct: 339 YDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLG 398

Query: 159 KYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G + N +++N + SAL  + + VR    I + +     PD  TY+ L+    +D  + 
Sbjct: 399 EVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVD 458

Query: 218 RAREIF--REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
            A E+    EM  + C P +V+Y I++  LCK  RV +A+ ++ +M    CRP    Y+ 
Sbjct: 459 EAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTF 518

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
           L+   G    + DA D    +     +++ + +  L   FCK + ++ +
Sbjct: 519 LIEGIGFGGCLNDARDLATTLVNMDAISEHS-FERLYKTFCKLDVYRQL 566



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 1/158 (0%)

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
           CKA  F      L+ + +KG  P+   C  +++GL      D+A +V   +      D  
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLI 127

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y  +I  FC+   ++ A++V   MK K F P + T+++LI  LC +G++  +      +
Sbjct: 128 AYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQL 187

Query: 436 IEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQEKMNL 472
           +++  +P+  T+  L    L++ G ++ +K L E + +
Sbjct: 188 LKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEI 225


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 122 AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           A R+   ++V  +  ++  Y R  +++ A      M    V  +   +  ++  LC    
Sbjct: 104 AERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGR 160

Query: 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           V +A  + D M  R   P   TY++LLE   K     +A E+  EM   GC P+IVTY +
Sbjct: 161 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNV 220

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ +C+ GRVD+A   +  + S   +P +  Y+ ++       R ED  + F EM +  
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
            + +   ++ L+  FC+    +   +VL+ M+  G A N+  CNI++N +  +G  D+A+
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +    M    C  D  +YT ++K  C+    E A ++ K M  K   P+  TF+  I  L
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           C KG++  + +L+E M E G   +  T+  L      +GR D
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVD 442



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 182/377 (48%), Gaps = 5/377 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + SV  Y  ++E++ K   +    ++++ MR K    N+ T+ +I+    R  +V++A  
Sbjct: 177 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 236

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
             N +  YG   +  ++  +L  LC +K     +E+F + M+   +P+  T+ +L+  + 
Sbjct: 237 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFC 296

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +   + RA ++  +M   GC  +     I+++ +CK GRVD+A   + +M S  C P + 
Sbjct: 297 RGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTI 356

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++       R EDA +   EM +     +   +N  I   C+    +    +++ M
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
           +  G   N  T N ++NG   +G  D A  +F  M   C+ +  TYT ++   C    L+
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNTITYTTLLTGLCNAERLD 474

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++   M  K   P++ TF+VL++  C KG++ ++  L+E M+E G  P+  T+  L 
Sbjct: 475 AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 534

Query: 452 KLLIKE-GREDVLKFLQ 467
             +  +   E+ L+ L 
Sbjct: 535 DGITNDCNSEEALELLH 551



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 170/343 (49%), Gaps = 5/343 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ +++    +     +A+   + M+  G T N+  +N +++ +C+   V  A+E  
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +    F PD+ +Y+ +L+G           E+F EM++  C P+ VT+ ++V   C+ 
Sbjct: 239 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 298

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V+ A+ +++ M    C   + + +++++T   + R++DA      M   G   D   Y
Sbjct: 299 GMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISY 358

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             ++   C+A ++++   +LK+M  K   PN  T N  +  L  +G  ++A  +  +M +
Sbjct: 359 TTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE 418

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             CE +  TY  ++  FC  G ++ A +++  M  K   P+  T++ L+ GLC+   +  
Sbjct: 419 HGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDA 475

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  LL +M++K   P+  TF  L     ++G  D    L E+M
Sbjct: 476 AAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 518



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 156/336 (46%), Gaps = 3/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R   R  +  +A       ++ G   ++ A+N L++  C+   +  A+ +   M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP--V 141

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD+ TY+ ++ G      +  A  +  +M+  GC P +VTY ++++ +CK+    +A+ 
Sbjct: 142 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  M +  C P    Y+V+++    E R++DA +    +   G   D   Y  ++   C
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
            A ++++V  +  +M  K   PN  T ++++      G  + A +V  +M    C A+  
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 321

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              ++I   C+ G ++ AF+    M      P   +++ ++ GLC      D+  LL++M
Sbjct: 322 LCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEM 381

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           + K   P+  TF     +L ++G  +    L E+M+
Sbjct: 382 VRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 417



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 172/372 (46%), Gaps = 6/372 (1%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAV 151
           ++    +Y ++++ L   ++++ + +L   M  K  M N  TF +++R + R   VE A+
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAI 305

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
                M  +G   N    N +++ +CK   V  A +  + M      PD+ +Y+ +L+G 
Sbjct: 306 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +      A+E+ +EMV   C P+ VT+   + +LC+ G +++A  +++ M    C    
Sbjct: 366 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 425

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ LV+ + V+ R++ A++ F  M       +   Y  L+   C A +      +L +
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAE 482

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M  K  APN  T N++++    +G  DEA  +  +M++  C  +  TY  ++        
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCN 542

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            E+A ++   +      P + T+S +I  L  +  V ++  +   + + G+RP    + K
Sbjct: 543 SEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNK 602

Query: 450 LRKLLIKEGRED 461
           +   L K    D
Sbjct: 603 ILLALCKRCNTD 614



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 12/290 (4%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM----LNVETF-CIIMRKYARVQKVEEAVYT 153
           +Y ++++ L +  +++   +L+  M  K      +   TF CI+ +K      +E+A   
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK----GLIEQATML 412

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
              M ++G   N+  +N L++  C    V  A E+F  M  +  P++ TY+ LL G    
Sbjct: 413 IEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK--PNTITYTTLLTGLCNA 470

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A E+  EM+   C P++VT+ ++V   C+ G +DEA+ +V+ M    C P    Y
Sbjct: 471 ERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITY 530

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+     +   E+A++    +  NG+  D+  Y+++IG   + ++ +   ++   +  
Sbjct: 531 NTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQD 590

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            G+ P +   N IL  L  R  TD A   F  M+   C  +  TY  +I+
Sbjct: 591 LGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 640



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  +V    S    P  ++ + L+       R  DA       E++G   DV  YN L+
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 120

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
             +C+  +     R++  M    VAP++ T   I+ GL  RG   EA  +   M+ + C+
Sbjct: 121 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
               TYT++++  C+     +A +V   M+ K   P++ T++V+ING+C +G V D+   
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKM 470
           L  +   G +P   ++  + K L    R EDV +   E M
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 125/323 (38%), Gaps = 69/323 (21%)

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST---------- 264
           +L  A  +       G  PD+     ++  LC+ GR  +A  ++++ + +          
Sbjct: 58  DLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYN 117

Query: 265 -----VCR-----------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
                 CR                 P ++ Y+ ++       R+ +A+    +M   G  
Sbjct: 118 TLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 177

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
             V  Y  L+ A CK+  F     VL +M +KG  PN  T N+I+NG+   G  D+A   
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 363 FRR------------------------------------MIKLCEADADTYTMMIKMFCQ 386
             R                                    M K C  +  T+ M+++ FC+
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
           GG +E+A +V + M       +    +++IN +C +G V D+   L +M   G  P   +
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 357

Query: 447 FGKLRKLLIKEGR-EDVLKFLQE 468
           +  + K L +  R ED  + L+E
Sbjct: 358 YTTVLKGLCRAERWEDAKELLKE 380



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 3/249 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
            +   E ++  Y++++       +     +L  +M  K   N  T+  ++      ++++
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKP--NTITYTTLLTGLCNAERLD 474

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            A      M +     N+  FN L+S  C+   + +A E+ + M +    P+  TY+ LL
Sbjct: 475 AAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL 534

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G   D N   A E+   +V  G +PDIVTY  ++ VL +  RV+EA+ +   +     R
Sbjct: 535 DGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR 594

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P + IY+ ++         + A+D F  M  NG + +   Y  LI      +  K    +
Sbjct: 595 PKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDL 654

Query: 328 LKDMNSKGV 336
           L+++ S+GV
Sbjct: 655 LRELCSRGV 663



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 2/205 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y +++  L    +     +L+  M  K    NV TF +++  + +   ++EA+     M 
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           ++G T NL  +N LL  +    N  +A E+   +    + PD  TYS ++    ++  + 
Sbjct: 520 EHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 579

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++F  + D G  P  V Y  ++  LCK    D A+     M S  C P    Y  L+
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639

Query: 278 HTYGVENRIEDAVDTFLEMEKNGIL 302
                E+ +++  D   E+   G+L
Sbjct: 640 EGLANEDFLKETRDLLRELCSRGVL 664


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 214/479 (44%), Gaps = 47/479 (9%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGI 59
           M +V    NKM +  +   R+++  + ST  LD     I KI    P    + AL+   +
Sbjct: 35  MFRVPSMNNKMQN--LPMNRKFSGKDTSTRKLDERFIRILKIFKWGPDA--EKALEVLKL 90

Query: 60  RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +V   +V +VL K      +   FFKWA K++N+EH   ++ ++I SL +   Y  MW  
Sbjct: 91  KVDHRLVHEVL-KIDVEINVKIQFFKWAGKRRNFEHDSSSFMALIHSLDEAGFYGEMWKT 149

Query: 120 VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           +  M         + C+I            +VY   +++  G                K+
Sbjct: 150 IQDMVR------SSTCVI-----------SSVYLSEIVKLLG----------------KA 176

Query: 180 KNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVT 237
           K V KA  +F  +K R   P + TY+ ++    ++ +L +  EI+ EM + G C PD VT
Sbjct: 177 KMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVT 236

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  ++    K G  D A+ +   M      PT+ IY+ L+  Y   +++E A+D   EM+
Sbjct: 237 YSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMK 296

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G    V  Y   I    KA +  + YRV  DM   G  P+    N ++N L   G  +
Sbjct: 297 DKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLE 356

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMF--CQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
              ++FR+M    C+ +  TY  +IK    C+    E A   ++ MK     PS  T+S+
Sbjct: 357 VTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAA-SWFEKMKGCGIAPSSFTYSI 415

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK--FLQEKMN 471
           LI+G C    +  + +LLE+M EKG  P    +  L   L K  R +     FL+ K N
Sbjct: 416 LIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKEN 474



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 96  SVRAYHSMIESLAKIRQ----YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +V  Y   I+ L K  +    Y++  D++       ++ + +   I+ K  R+   E  +
Sbjct: 303 TVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRL---EVTL 359

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSAL--CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
             F  M+ +    N+  +N ++ AL  CK+    +A   F+ MK   I P S TYSIL++
Sbjct: 360 KLFRKMESWQCKPNVVTYNTVIKALFECKAP-ASEAASWFEKMKGCGIAPSSFTYSILID 418

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ K   + +A  +  EM + G  P    Y  +++ L K  R + A  +   +       
Sbjct: 419 GFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHS 478

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           ++ +Y+V++  +G   R+ +AVD F EMEK G   DV  YNAL+    +A        +L
Sbjct: 479 SARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLL 538

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQG 387
           + M+  G +P+  + NIILNGL   G  D A  +F +M   + + DA +Y  ++      
Sbjct: 539 RTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHA 598

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           G  E+A K+ + M LK F  +  T++ ++  +
Sbjct: 599 GLFEEAAKLMREMNLKGFEYNNITYTSILEAV 630



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 170/379 (44%), Gaps = 8/379 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I +  K+  Y     L + M+   +    + +  ++  Y ++ KVE+A+     M+
Sbjct: 237 YSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMK 296

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G T  +  +   +  L K+  V  A  +F D +KD   PD    + L+   GK   L 
Sbjct: 297 DKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLE 356

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVL--CKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              ++FR+M    C P++VTY  ++  L  CKA    EA    + M      P+SF YS+
Sbjct: 357 VTLKLFRKMESWQCKPNVVTYNTVIKALFECKAP-ASEAASWFEKMKGCGIAPSSFTYSI 415

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  +   NRIE A+    EM++ G     A Y +LI +  K  +++    +  ++    
Sbjct: 416 LIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENC 475

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
              ++R   +++      G   EA  +F  M KL  + D   Y  ++    + G +++A 
Sbjct: 476 GHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQ 535

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            + + M      P +++ ++++NGL   G+   +  +   M    I+P   ++  +   L
Sbjct: 536 SLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCL 595

Query: 455 IKEGR-EDVLKFLQEKMNL 472
              G  E+  K ++E MNL
Sbjct: 596 SHAGLFEEAAKLMRE-MNL 613



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 71/262 (27%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY S+I SL K+++Y+   +L   ++      +   + ++++ + +  ++ EAV  FN M
Sbjct: 447 AYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEM 506

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           +K G                                    PD   Y+ L+ G  +   + 
Sbjct: 507 EKLGSK----------------------------------PDVYAYNALMSGMVRAGMID 532

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A+ + R M + GC+PD+ ++ I+++ L + G  D A+ +   M S++ +P         
Sbjct: 533 EAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKP--------- 583

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                                     D   YN ++G    A  F+   +++++MN KG  
Sbjct: 584 --------------------------DAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFE 617

Query: 338 PNSRTCNIILNGLIGRGETDEA 359
            N+ T   IL   +G+ + D A
Sbjct: 618 YNNITYTSILEA-VGKVDEDRA 638


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 215/454 (47%), Gaps = 48/454 (10%)

Query: 50  LDTALDQSGIRVSPEIVEDVLE--KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL 107
           LDT      I++SP  V  +L   + +    +A  FF WA KQ+ Y H++  Y S+I+ L
Sbjct: 95  LDTFCHMFLIKLSPSFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVL 154

Query: 108 AKIRQYQIMWDLVNAMRTK-----RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           A       + D V ++ +K      ++ V +   +++ +  +  VEE ++ +  M++ G+
Sbjct: 155 AT----NGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGI 210

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRARE 221
             +L ++N L++ L  SK +  A+ +F+ M++  I PD  TY+ +++G+ +     +A E
Sbjct: 211 EPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFE 270

Query: 222 IFREMVDTGCNPDIVT-----------------------------------YGIMVDVLC 246
             + M      PD +T                                   Y +++  LC
Sbjct: 271 KLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLC 330

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G+  E   + ++M S  C+    IY+ L+ +      + +A+  F  M+K G+  D  
Sbjct: 331 KDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEV 390

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  ++ + CK+ +       ++  + KGVA N+   + +++GL   G  DEA R+F  M
Sbjct: 391 TYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEM 450

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           +K  C  D+  Y  +I    + G++++A  + K M++     +++T+++LI GL  +   
Sbjct: 451 VKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRN 510

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            ++  L + MI+KGI P+   F  L   L   G+
Sbjct: 511 EEALTLWDLMIDKGITPTAAAFRALSTGLCLSGK 544



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 171/381 (44%), Gaps = 7/381 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTF 154
           V  Y++MI+   ++ + +  ++ + AM  + +    +    +I   YA     +  +  +
Sbjct: 249 VVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAE-GDFDSCLGLY 307

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M + G+      ++ ++  LCK     +   +F+ M  +    +   Y+ L++   K 
Sbjct: 308 HEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKC 367

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+  A  +F+ M   G  PD VTYG++V+ LCK+GR+DEAL  ++          +  Y
Sbjct: 368 GNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFY 427

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+   G   R+++A   F EM K G   D   YNALI A  K  K      + K M  
Sbjct: 428 SSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEV 487

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G      T  I++ GL      +EA  ++  MI K     A  +  +    C  G++ +
Sbjct: 488 DGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVAR 547

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A K+   M     IP    F  +IN LC  G + ++C L + ++++G    G     L  
Sbjct: 548 ACKILDEMAPMGVIPET-AFDDMINILCKAGRIKEACKLADGIVDRGREIPGRVRTVLIN 606

Query: 453 LLIKEGREDV-LKFLQEKMNL 472
            L K G  D+ LK ++ K+ +
Sbjct: 607 ALRKAGNADLALKLMRSKIGI 627



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 36/305 (11%)

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           + ++  + + Y  L++    +  L   + +F +  + G    + +   ++      G V+
Sbjct: 137 QKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVE 196

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           E L + + M      P+ F Y+ LV+       IE A   F  ME   I  DV  YN +I
Sbjct: 197 EVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMI 256

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRT-------C---------------------- 343
             +C+  K +  +  LK M  + VAP+  T       C                      
Sbjct: 257 KGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLE 316

Query: 344 ------NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
                 ++++ GL   G+  E Y VF  MI K C+A+   YT +I    + G + +A  +
Sbjct: 317 IPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLL 376

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +K MK +   P   T+ V++N LC  G + ++   +E    KG+  +   +  L   L K
Sbjct: 377 FKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGK 436

Query: 457 EGRED 461
            GR D
Sbjct: 437 SGRVD 441


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 176/363 (48%), Gaps = 5/363 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   D++  MR +  +  N  T+  ++  + +V +V+EAV  F+ M
Sbjct: 188 YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM 247

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V      +N L+   C    +  A    D M +R +  +  TY++L+     D  
Sbjct: 248 LTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGR 307

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E+  EM   G   D+ TY I+++  CK G V +AL I ++M     R T   Y+ 
Sbjct: 308 GTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTS 367

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++    + ++++    F E  + GI  D+ +YNALI +   +      + ++ +M  K 
Sbjct: 368 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 427

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           +AP+  T N ++ GL   G  DEA ++   M K   + D  TY  +I  +   G+++ A 
Sbjct: 428 IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDAL 487

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M  K F P++ T++ LI GLC  G   D+  ++++M+E GI P   T+  L + L
Sbjct: 488 RIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547

Query: 455 IKE 457
             E
Sbjct: 548 TTE 550



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 169/408 (41%), Gaps = 52/408 (12%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           S  + H ++ +L     + +  D+    R +  L   TF I++R      K   A+    
Sbjct: 122 STASLHPLLSALPSAPAFALFADM---FRLRLPLCTTTFNIMLRHLCSAGKPARALELLR 178

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKD 213
            M +     N   +N +++  C    V+ A +I   M++R    P+  TY  ++ GW K 
Sbjct: 179 QMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 234

Query: 214 PNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             +  A ++F EM+  G   P+ V Y  ++   C  G++D AL     M       T   
Sbjct: 235 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 294

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++LVH   ++ R  +A +   EM   G+  DV  YN LI   CK    K    + ++M+
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMS 354

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYTMMIKMFCQGG 388
            +GV     T   ++  L  +G+  E  ++F    RR I+    D   Y  +I      G
Sbjct: 355 RRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR---PDLVLYNALINSHSTSG 411

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC---------------------------- 420
            +++AF++   M+ KR  P   T++ L+ GLC                            
Sbjct: 412 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 471

Query: 421 -------DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                   KG V D+  +  +M+ KG  P+  T+  L + L K G+ D
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 519



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKD 194
           +++   A V+    ++  ++ M+   +  + A+ + LLSAL  +     A  +F D  + 
Sbjct: 93  LLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRL 148

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R    + T++I+L          RA E+ R+M      P+ VTY  ++   C  GRV  A
Sbjct: 149 RLPLCTTTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAA 204

Query: 255 LGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALI 312
           L I++ M +     P  + Y  ++  +    R+++AV  F EM   G +  +  MYNALI
Sbjct: 205 LDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALI 264

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
           G +C   K          M  +GVA    T N++++ L   G   EAY +   M  K   
Sbjct: 265 GGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLA 324

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY ++I   C+ G ++KA ++++ M  +    ++ T++ LI  L  KG V ++  L
Sbjct: 325 LDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKL 384

Query: 432 LEDMIEKGIRP 442
            ++ + +GIRP
Sbjct: 385 FDEAVRRGIRP 395



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 2/262 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++ +L    +    ++LV  M  K + L+V T+ I++  + +   V++A+  F
Sbjct: 291 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIF 350

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M + GV   +  +  L+ AL K   V++  ++FD    R I PD   Y+ L+      
Sbjct: 351 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 410

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+ RA EI  EM      PD VTY  ++  LC  GRVDEA  ++  M     +P    Y
Sbjct: 411 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY 470

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  Y ++  ++DA+    EM   G    +  YNALI   CK  +  +   ++K+M  
Sbjct: 471 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 530

Query: 334 KGVAPNSRTCNIILNGLIGRGE 355
            G+ P+  T   ++ GL    E
Sbjct: 531 NGITPDDSTYISLIEGLTTEDE 552


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 200/389 (51%), Gaps = 6/389 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK--QQNYEHSVRAYHSMIESLAKIRQYQI 115
           GI+++  +   ++  + +AG        W EK   +N       Y+S++++  +    + 
Sbjct: 82  GIQLNEAVFCSIISGYASAGNNEAAE-HWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 140

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           +  L+  M  +    N+  +  ++  +A ++  E+ +  F+ ++  G++   A +  ++ 
Sbjct: 141 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVK 200

Query: 175 ALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
              K+ N+ KA +I + M K    P+   Y+++++G+ +  +   A +++ +MV  G  P
Sbjct: 201 LFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           DIV Y I+V   CKAGR+D+ALG+++++++    PT   Y+ ++  Y     I+ A++ F
Sbjct: 261 DIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF 320

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             ++  G+   V  YN+L+    KA + +N   +L +M + GV PN R+   +  G    
Sbjct: 321 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARA 380

Query: 354 GETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G+ ++A+ +F+RM K   A D   Y  ++K  C+ G +++A +V++ +       +  T+
Sbjct: 381 GDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITY 440

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             +++G   KG +S +  LL DM + G  
Sbjct: 441 CTMLDGWARKGELSKARDLLNDMQKHGFH 469



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 159/344 (46%), Gaps = 11/344 (3%)

Query: 122 AMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
           AMR   +  NV  +  ++  YA  + +E AV     M   G+  N A F  ++S    + 
Sbjct: 42  AMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAG 101

Query: 181 NVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           N   A+  F+  K +  +P    Y+ +++ + +  N+     +  +M + G   ++  Y 
Sbjct: 102 NNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYT 161

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +++   +    ++ L     + +    PT+  Y  +V  +     +  A+D   EM+K+
Sbjct: 162 TVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKH 221

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  +  +Y  ++  + +   F   ++V +DM S G+ P+    NI+++     G  D+A
Sbjct: 222 GVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKA 281

Query: 360 YRVFR-----RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             V       R++   E    TYT ++  + +GG ++KA +V+  +K     P + +++ 
Sbjct: 282 LGVLENIEANRLLPTIE----TYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNS 337

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           L++GL     + ++ ++L +M+  G+ P+  ++  L +   + G
Sbjct: 338 LLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAG 381



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 160/357 (44%), Gaps = 6/357 (1%)

Query: 15  CISFLRRYNSSEPSTEALDAA---KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLE 71
           C+SF  R  +   S  A       K  +K    +  + +   +D+ G+  +  I   +++
Sbjct: 176 CLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 235

Query: 72  KFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
            +   G     F  W +      +  +  Y+ ++ +  K  +      ++  +   R+L 
Sbjct: 236 GYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLP 295

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            +ET+  I+  Y +   +++A+  F+ ++  G+   + ++N LLS L K++ +  A+ + 
Sbjct: 296 TIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLML 355

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M  +  +P+ ++Y+ L EG+ +  ++ +A  +F+ M       DIV YG ++   CK+
Sbjct: 356 NEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKS 415

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +  A  + + +     +     Y  ++  +  +  +  A D   +M+K+G   D   Y
Sbjct: 416 GAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICY 475

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
            + I A  ++   + V   L  M  K +  N+RT   +++G +   + D+A   + +
Sbjct: 476 TSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQ 532



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/340 (19%), Positives = 152/340 (44%), Gaps = 2/340 (0%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           +VNA +      +  + +++  YAR      A  TF  M+   +  N+  +  L+ A  +
Sbjct: 5   IVNAFQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAE 64

Query: 179 SKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           ++++  A    + M  + I  +   +  ++ G+    N   A   F +       P  + 
Sbjct: 65  ARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV 124

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  +V   C+AG ++    ++  M+    +    +Y+ +++ +      E  +  F  ++
Sbjct: 125 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 184

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G+    A Y  ++  F KA        +L++M+  GV+PN     +I++G    G+  
Sbjct: 185 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 244

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
            A++V+  M+    + D   Y +++  FC+ G ++KA  V + ++  R +P++ T++ ++
Sbjct: 245 AAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSIL 304

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +G    G +  +  + + +   G+RP   ++  L   L K
Sbjct: 305 DGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAK 344



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 117/266 (43%), Gaps = 3/266 (1%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P  + Y +L++ + +  +   AR  F  M  +   P++  Y  ++    +A  ++ A+  
Sbjct: 15  PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 74

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + M S   +    ++  ++  Y      E A   F + +   ++    +YN+++ A+C+
Sbjct: 75  TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 134

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADAD 375
           A   + V  +L  M  +G   N      +LNG     + ++    F R+ K C     A 
Sbjct: 135 AGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRL-KACGLSPTAA 193

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY  ++K+F + G + KA  + + M      P+   ++++++G    G  + +  + EDM
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 253

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           +  G++P    +  L     K GR D
Sbjct: 254 VSAGLKPDIVIYNILVHAFCKAGRMD 279



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 2/204 (0%)

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P    Y +LV  Y        A  TF  M  + I  +V +Y +LI A+ +A   +    
Sbjct: 14  KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
             ++M S+G+  N      I++G    G  + A   F +   +        Y  +++ +C
Sbjct: 74  CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 133

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q G +E    +   M+ + F  ++  ++ ++NG  +             +   G+ P+  
Sbjct: 134 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAA 193

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQE 468
           T+G + KL  K G     L  L+E
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEE 217



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 71  EKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKI----RQYQIMWDLVNA-M 123
           E +  AG +  AF  F+   K++N    + AY +++++  K     R  ++   + +A +
Sbjct: 375 EGYARAGDVEKAFGMFQRM-KKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGL 433

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           +  R+    T+C ++  +AR  ++ +A    N MQK+G   +   +   + A  +S +  
Sbjct: 434 KHNRI----TYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTE 489

Query: 184 KAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +  E    M+++ +  +++TY+ L+ GW    +  +A   + +   +G   D      ++
Sbjct: 490 EVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLL 549

Query: 243 DVLCKAGRVDEALG 256
             L      +  LG
Sbjct: 550 SGLISCASQNSTLG 563


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 154/330 (46%), Gaps = 5/330 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            V T+  ++  Y R  ++E+A    + M       +   FN L+ ALC    V  A  +F
Sbjct: 129 TVVTYNTMVNGYCRAGRIEDARRLISGMP---FPPDTFTFNPLIRALCVRGRVPDALAVF 185

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  R   P   TYSILL+   K     +A  +  EM   GC PDIVTY ++++ +C  
Sbjct: 186 DDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNE 245

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G VDEAL I+  + S  C+P +  Y+ ++ +     R ++  + F EM  N    D   +
Sbjct: 246 GDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTF 305

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++ + C+        +V+  M+  G  P+  T + IL+GL   G  D+A  +  R+  
Sbjct: 306 NTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKS 365

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C+ D   YT ++K  C   + E A ++   M      P   TF+ +I  LC KG+V  
Sbjct: 366 YGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDR 425

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           +  ++E M E G  P   T+  +   L  E
Sbjct: 426 AIKVVEQMSENGCNPDIVTYNSIIDGLCNE 455



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 181/380 (47%), Gaps = 4/380 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y  ++++  K   Y+    L++ MR K    ++ T+ +++        V+EA+   
Sbjct: 196 SVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNIL 255

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + +  +G   +   +  +L +LC S+  ++ +E+F  M  ++  PD  T++ ++    + 
Sbjct: 256 SDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQ 315

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + RA ++   M + GC PDIVTY  ++D LC  GRVD+A+ ++  + S  C+P +  Y
Sbjct: 316 GLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 375

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++       + E A +   EM  +    D   +N +I + C+        +V++ M+ 
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            G  P+  T N I++GL      D+A  +   +    C+ D  T+  ++K  C     E 
Sbjct: 436 NGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWED 495

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M      P   TF+ +I  LC KG++  +   L+ M E G  P+  T+  +  
Sbjct: 496 AEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVD 555

Query: 453 LLIKEGR-EDVLKFLQEKMN 471
            L+K G+ ++ LK L    N
Sbjct: 556 ALLKAGKTQEALKLLSGMTN 575



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 154/339 (45%), Gaps = 12/339 (3%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  I+     V +V++AV   + ++ YG   +  A+  +L  LC  +    A+E+ 
Sbjct: 336 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELM 395

Query: 190 ------DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
                 DC      PD  T++ ++    +   + RA ++  +M + GCNPDIVTY  ++D
Sbjct: 396 AEMVCSDCP-----PDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIID 450

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LC    +D+A+ ++ ++ S  C+P    ++ L+      +R EDA    + M  +    
Sbjct: 451 GLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPP 510

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D   +N +I + C+          LK M   G  PN  T NI+++ L+  G+T EA ++ 
Sbjct: 511 DATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLL 570

Query: 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
             M      D  TY  +I    + G++E+A  + + M      P   T+  L  G+C + 
Sbjct: 571 SGMTNG-TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICRED 629

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
               +  +L  + + G+ P    +  +     +  R D+
Sbjct: 630 GTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDI 668



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           R  +  R     G +  +VTY  MV+  C+AGR+++A  ++  M      P +F ++ L+
Sbjct: 113 RVADAERVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMPFP---PDTFTFNPLI 169

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
               V  R+ DA+  F +M   G    V  Y+ L+ A CKA+ ++    +L +M +KG  
Sbjct: 170 RALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCE 229

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P+  T N+++N +   G+ DEA  +   +    C+ DA TYT ++K  C     ++  ++
Sbjct: 230 PDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEEL 289

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           +  M   +  P   TF+ ++  LC +G+V  +  +++ M E G  P   T+  +   L  
Sbjct: 290 FAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCD 349

Query: 457 EGRED 461
            GR D
Sbjct: 350 VGRVD 354



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 4/257 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  I+      + +++A+   + +Q YG   ++  FN LL  LC       A+++ 
Sbjct: 441 DIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLM 500

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + M     PD+ T++ ++    +   L +A E  + M + GC P+  TY I+VD L KA
Sbjct: 501 VNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKA 560

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+  EAL ++  M +    P    Y+ ++       ++E+A+D    M  NG+  D   Y
Sbjct: 561 GKTQEALKLLSGMTNGT--PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITY 618

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            +L    C+ +      R+L  +   G++P++   N IL G      TD A   F  M+ 
Sbjct: 619 RSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVS 678

Query: 369 L-CEADADTYTMMIKMF 384
             C  D  TY ++++  
Sbjct: 679 SGCMPDESTYIILLEAL 695



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 12/215 (5%)

Query: 251 VDEALGIVKSM----DSTVCRPTSFI-YSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           +D+AL +V S+     S  C P   +  ++L+       R+ DA   F  +   G  A V
Sbjct: 74  IDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATL---GASATV 130

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YN ++  +C+A + ++  R++  M      P++ T N ++  L  RG   +A  VF  
Sbjct: 131 VTYNTMVNGYCRAGRIEDARRLISGMP---FPPDTFTFNPLIRALCVRGRVPDALAVFDD 187

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+ + C     TY++++   C+     +A  +   M+ K   P + T++VLIN +C++G 
Sbjct: 188 MLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGD 247

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           V ++  +L D+   G +P   T+  + K L    R
Sbjct: 248 VDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSER 282



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 112/241 (46%), Gaps = 2/241 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDL-VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++++ L  + +++    L VN M +    +  TF  ++    +   + +A+ T  
Sbjct: 477 IVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLK 536

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +M + G   N + +N ++ AL K+   ++A ++   M +   PD  TY+ ++    K   
Sbjct: 537 IMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG-TPDLITYNTVISNITKAGK 595

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A ++ R MV  G +PD +TY  +   +C+    D A+ ++  +      P +  Y+ 
Sbjct: 596 MEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYND 655

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++  +    R + A+D F  M  +G + D + Y  L+ A           ++L ++ S G
Sbjct: 656 ILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLG 715

Query: 336 V 336
           V
Sbjct: 716 V 716



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI   C   +  +  RV   +   G +    T N ++NG    G  ++A    RR+I 
Sbjct: 102 NILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDA----RRLIS 154

Query: 369 LCEADADTYTM--MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 DT+T   +I+  C  G +  A  V+  M  +   PS+ T+S+L++  C      
Sbjct: 155 GMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYR 214

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            + VLL++M  KG  P   T+  L   +  EG  D      E +N+L   P
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVD------EALNILSDLP 259


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 133/553 (24%), Positives = 233/553 (42%), Gaps = 138/553 (24%)

Query: 42  MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
           +LS P+   D +L      ++P ++  +     +  T A  FF+W  +  N+ HS+  +H
Sbjct: 32  ILSRPRWRKDPSLKTLIPSLTPSLLCSLFNLNPDPLT-ALNFFRWIRRHHNFPHSLATHH 90

Query: 102 SMIESLAKIRQYQIMWDLVNAM---------------RTKRM----------------LN 130
           S++  L + R  +   ++ N+M                 +RM                L+
Sbjct: 91  SLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLS 150

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVM---QKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           + ++  ++   +R   V+E +  +  M       V  NL   N +L++ CK  N+  A+ 
Sbjct: 151 LTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARL 210

Query: 188 IF-DCMKDRFIPDSKTYSILLEGWGKDPNLPR---------------------------- 218
            F   ++    PD  TY+ L+ G+ ++ ++ R                            
Sbjct: 211 FFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGK 270

Query: 219 ---AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A E +  M + GC P + TY ++V  LC++GR  EAL +   M    C P  + Y+V
Sbjct: 271 LHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTV 330

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+     E R+++A+    EM + G+   V  +NALIG++CK    ++   VL  M SK 
Sbjct: 331 LIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKK 390

Query: 336 VAPNSRT-----C------------------------------NIILNGLIGRGETDEAY 360
           V PN RT     C                              N +++GL   G  D A 
Sbjct: 391 VCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSAS 450

Query: 361 RVFRRMIK----------------LC--------------------EADADTYTMMIKMF 384
           R+FR MI+                LC                    +A+   YT +I  +
Sbjct: 451 RLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGY 510

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G++E A  ++K M  +  +P+  TF+V+I+GL  +G V D+ +L+EDM +  ++P+ 
Sbjct: 511 CKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTL 570

Query: 445 ETFGKLRKLLIKE 457
            T+  L + ++KE
Sbjct: 571 HTYNILVEEVLKE 583



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 177/384 (46%), Gaps = 40/384 (10%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +VR Y+ +I    + +       L+N M  +K   +V T+  ++     V  V+ A   F
Sbjct: 394 NVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLF 453

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            +M + G + +   FN  +  LC+   V +A +I + +K++ +  +   Y+ L++G+ K 
Sbjct: 454 RLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKA 513

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +F+ M+   C P+ +T+ +M+D L K G+V +A+ +V+ M     +PT   Y
Sbjct: 514 GKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTY 573

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++LV     E   + A +    +  +G   +V  Y A I A+C   + +    ++  + +
Sbjct: 574 NILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKN 633

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +GV  +S   N+++N     G  D A+ V RRM    CE    TY++++K       +EK
Sbjct: 634 EGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLV----IEK 689

Query: 393 AFK---------------------VWK----------YMKLKR--FIPSMHTFSVLINGL 419
             K                     +W           + K+     +P+++T+S LINGL
Sbjct: 690 HKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGL 749

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPS 443
           C  G ++ +  L   M E GI PS
Sbjct: 750 CKVGRLNVAFSLYHHMREGGISPS 773



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 193/431 (44%), Gaps = 44/431 (10%)

Query: 76  AGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVET 133
           AG L      WA  ++     +VR Y  ++ +L +  +      L   MR +    NV T
Sbjct: 268 AGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYT 327

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++    +  +++EA+   N M + GV  ++  FN L+ + CK   +  A  +   M+
Sbjct: 328 YTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLME 387

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
            + + P+ +TY+ L+ G+ +  ++ RA  +  +MV++  +PD+VTY  ++  LC+ G VD
Sbjct: 388 SKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVD 447

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  + + M      P  + ++  +       R+ +A      +++  + A+   Y ALI
Sbjct: 448 SASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALI 507

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---- 368
             +CKA K ++   + K M ++   PNS T N++++GL   G+  +A  +   M K    
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVK 567

Query: 369 -------------LCEADAD-------------------TYTMMIKMFCQGGELEKAFKV 396
                        L E D D                   TYT  IK +C  G LE+A ++
Sbjct: 568 PTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEM 627

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI- 455
              +K +  +     +++LIN     G++  +  +L  M   G  PS  T+  L K L+ 
Sbjct: 628 VIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVI 687

Query: 456 ----KEGREDV 462
               KEG   V
Sbjct: 688 EKHKKEGSNPV 698



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 173/399 (43%), Gaps = 34/399 (8%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+++ + +  AY ++I+   K  + +    L   M  +  L N  TF +++    +  KV
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKV 551

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           ++A+     M K+ V   L  +N L+  + K  +  +A EI +  +   + P+  TY+  
Sbjct: 552 QDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAF 611

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++ +     L  A E+  ++ + G   D   Y ++++     G +D A G+++ M  T C
Sbjct: 612 IKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGC 671

Query: 267 RPTSFIYSVLVHTYGVE---------------------------NRIEDAVDTFL--EME 297
            P+   YS+L+    +E                           ++I+  + T L  +M 
Sbjct: 672 EPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMA 731

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G + ++  Y+ LI   CK  +    + +   M   G++P+    N +L+     G   
Sbjct: 732 ECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFG 791

Query: 358 EAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA  +   M++    A  ++Y ++I    +    EKA  V+  +    +      + VLI
Sbjct: 792 EAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLI 851

Query: 417 NGLCDKGIVSDSCVLLEDMIEK-GIRPSGETFGKLRKLL 454
           +GL   G V D C  L +++EK G R   ET+  L + L
Sbjct: 852 DGLAKTGYV-DQCSELLNLMEKNGCRLHPETYSMLMQEL 889


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 195/432 (45%), Gaps = 56/432 (12%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
            A+ +     S +IV+ VL   R   T +  FF++  KQQN+  +V++Y  ++  L++ R
Sbjct: 57  NAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGR 116

Query: 112 QY--------------------QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
            Y                     ++WD +  +  +   +   F +I++ Y      + A+
Sbjct: 117 MYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNAL 176

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211
           Y F+ M K G   +L + N LL+ L K                    + +T++       
Sbjct: 177 YVFDNMGKCGRIPSLRSCNSLLNNLVK--------------------NGETHT------- 209

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A  ++++M+  G  PD+    IMV+  CK G+VDEA G VK M++    P   
Sbjct: 210 -------AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIV 262

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y  L++ Y     +E A      M + G+  +V  Y  LI  +CK  K     +VL+ M
Sbjct: 263 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM 322

Query: 332 NSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
             +  + P+ R   ++++G    G+ D+A R+   M++L  + +      +I  +C+ GE
Sbjct: 323 QEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGE 382

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + +A  V   M      P  ++++ L++G C +G  S++  L + M+++GI P+  T+  
Sbjct: 383 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 442

Query: 450 LRKLLIKEGRED 461
           L K L + G  D
Sbjct: 443 LLKGLCRVGAFD 454



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 188/421 (44%), Gaps = 40/421 (9%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           W  K  +Y     +Y+++++   +       ++L + M  + +   V T+  +++   RV
Sbjct: 396 WNLKPDSY-----SYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTY 203
              ++A+  +++M K GV  +   ++ LL  L K +N   A  ++ D +   F     T+
Sbjct: 451 GAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 510

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + ++ G  K   +  A EIF +M D GC+PD +TY  ++D  CKA  V +A  +  +M+ 
Sbjct: 511 NTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER 570

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P+  +Y+ L+       R+ +  D   EM   G+  ++  Y ALI  +CK      
Sbjct: 571 EXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDK 630

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------CEADAD- 375
            +    +M   G++ N   C+ +++GL   G  DEA  + ++M+         C   +D 
Sbjct: 631 AFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDI 690

Query: 376 -------------------------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                                     Y + I   C+ G+++ A + +  + LK F+P   
Sbjct: 691 RYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNF 750

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T+  LI+G    G V ++  L ++M+ +G+ P+  T+  L   L K    D  + L  K+
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 471 N 471
           +
Sbjct: 811 H 811



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 167/370 (45%), Gaps = 38/370 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  ++  Y  +  VE A      M + GV++N+  +  L+   CK   + +A+++ 
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 190 DCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    +PD + Y +L++G+ +   +  A  +  EM+  G   ++     +++  CK
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G + EA G++  M     +P S+ Y+ L+  Y  E    +A +   +M + GI   V  
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPN---------------------------- 339
           YN L+   C+   F +  ++   M   GVAP+                            
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 499

Query: 340 ------SR-TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
                 SR T N +++GL   G+  EA  +F +M  L C  D  TY  +I  +C+   + 
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 559

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +AFKV   M+ +   PS+  ++ LI+GL     + +   LL +M  +G+ P+  T+G L 
Sbjct: 560 QAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALI 619

Query: 452 KLLIKEGRED 461
               KEG  D
Sbjct: 620 DGWCKEGMLD 629



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 190/404 (47%), Gaps = 14/404 (3%)

Query: 70  LEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR- 127
           +E F  A TL      W +   + +  S   +++MI  L K+ +     ++ + M+    
Sbjct: 485 MENFEGASTL------WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 538

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +  T+  ++  Y +   V +A      M++  ++ ++  +N L+S L KS+ + +  +
Sbjct: 539 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTD 598

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M  R   P+  TY  L++GW K+  L +A   + EM + G + +I+    MV  L 
Sbjct: 599 LLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY 658

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + GR+DEA  +++ M      P    +      Y    +I D++D   E  K  +L +  
Sbjct: 659 RLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD---ESCKTFLLPNNI 715

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +YN  I   CK  K  +  R    ++ KG  P++ T   +++G    G  DEA+R+   M
Sbjct: 716 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 775

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++     +  TY  +I   C+   +++A +++  +  K   P++ T++ LI+G C  G +
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             +  L + MIE+GI PS  T+  L   L K G  E  +K L +
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQ 879



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 153/319 (47%), Gaps = 6/319 (1%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYAR 143
           K A +++    S+  Y+S+I  L K R+     DL+  M  + +  N+ T+  ++  + +
Sbjct: 565 KGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCK 624

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKT 202
              +++A  ++  M + G++ N+   + ++S L +   + +A  +   M D  F PD + 
Sbjct: 625 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHEC 684

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +   L+   +   + +  +   E   T   P+ + Y I +  LCK G+VD+A      + 
Sbjct: 685 F---LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLS 741

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P +F Y  L+H Y     +++A     EM + G++ ++  YNALI   CK+    
Sbjct: 742 LKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVD 801

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
              R+   ++ KG+ PN  T N +++G    G  D A+++  +MI+        TY+ +I
Sbjct: 802 RAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALI 861

Query: 382 KMFCQGGELEKAFKVWKYM 400
              C+ G++E++ K+   M
Sbjct: 862 NGLCKHGDIERSMKLLNQM 880


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 222/490 (45%), Gaps = 57/490 (11%)

Query: 26  EPSTEALDAAKSISKIMLSSPKV-----VLDTALDQSG----------IRVSPEIVEDVL 70
           EP  +  D  KS ++ +L SP V     +LD +               I++SP  V  VL
Sbjct: 65  EPFNDVSDLVKS-NRNLLPSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVL 123

Query: 71  --EKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKR 127
             ++ R    +A+ FF W+ KQ+ Y H++  Y S+++ LA  +   +I +      + + 
Sbjct: 124 KSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEF 183

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
            + V     +++ + ++  VEE ++ +  M++ G+   L  +N L++ L  +  V  A+ 
Sbjct: 184 PMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAER 243

Query: 188 IFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV-- 244
           +F+ M+  R  PD  TY+ +++G+ K     +A E  R+M   G   D +TY  M+    
Sbjct: 244 VFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACY 303

Query: 245 ---------------------------------LCKAGRVDEALGIVKSMDSTVCRPTSF 271
                                            LCK G+++E   + ++M     +P   
Sbjct: 304 ADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVA 363

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           IY+VL+  Y     +EDA+     M   G   DV  Y+ ++   CK  + +         
Sbjct: 364 IYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC 423

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
              G+A NS   + +++GL   G  DEA R+F  M  K C  D+  Y  +I  F +  ++
Sbjct: 424 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKV 483

Query: 391 EKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++A  ++K M+ +     +++T+++L++G+  +    ++  L + MI+KGI P+   F  
Sbjct: 484 DEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRA 543

Query: 450 LRKLLIKEGR 459
           L   L   G+
Sbjct: 544 LSTGLCLSGK 553



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 176/387 (45%), Gaps = 22/387 (5%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y++MI+   K  Q Q   + +  M T+    +  T+  +++           V  +  M
Sbjct: 259 TYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEM 318

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
            + G+     AF+ ++  LCK   + +   +F+ M +    P+   Y++L++G+ K  ++
Sbjct: 319 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSV 378

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +   M+D G  PD+VTY ++V+ LCK GRV+EAL    +         S  YS L
Sbjct: 379 EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSL 438

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK-G 335
           +   G   R+++A   F EM + G   D   YNALI AF K  K      + K M  + G
Sbjct: 439 IDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEG 498

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
                 T  I+L+G+      +EA +++  MI K     A  +  +    C  G++ +A 
Sbjct: 499 CDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARAC 558

Query: 395 KVWKYMKLKRFIPSMHTFSV----LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           K+     L    P           +IN LC  G + ++C L + + E+G     E  G++
Sbjct: 559 KI-----LDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERG----REVPGRI 609

Query: 451 RKLLI----KEGREDV-LKFLQEKMNL 472
           R ++I    K G+ D+ +K +  K+ +
Sbjct: 610 RTVMINALRKVGKADLAMKLMHSKIGI 636



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRARE 221
           T NL  +  L+  L  +K+V + + +   +K    P +    + L++ +GK   +     
Sbjct: 149 THNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLW 208

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           ++R+M + G  P + TY  +++ L  A  VD A  + + M+S   +P    Y+ ++  Y 
Sbjct: 209 VWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYC 268

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              + + A++   +ME  G  AD   Y  +I A    + F +   + ++M+ KG+     
Sbjct: 269 KAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPH 328

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
             ++++ GL   G+ +E Y VF  MI K  + +   YT++I  + + G +E A ++   M
Sbjct: 329 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM 388

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             + F P + T+SV++NGLC  G V ++          G+  +   +  L   L K GR 
Sbjct: 389 IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRV 448

Query: 461 DVLKFLQEKMN 471
           D  + L E+M+
Sbjct: 449 DEAERLFEEMS 459



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 149/327 (45%), Gaps = 7/327 (2%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIE 105
           V L   +D+ GI+V P     V+      G L   +  F+   ++ + + +V  Y  +I+
Sbjct: 312 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGS-KPNVAIYTVLID 370

Query: 106 SLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             AK    +    L++ M  +    +V T+ +++    +  +VEEA+  F+  +  G+  
Sbjct: 371 GYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAI 430

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIF 223
           N   ++ L+  L K+  V +A+ +F+ M ++    DS  Y+ L++ + K   +  A  +F
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490

Query: 224 REMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           + M +  GC+  + TY I++  + K  R +EAL +   M      PT+  +  L     +
Sbjct: 491 KRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCL 550

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++  A     E+   G++ D A  + +I   CKA + K   ++   +  +G     R 
Sbjct: 551 SGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRI 609

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL 369
             +++N L   G+ D A ++    I +
Sbjct: 610 RTVMINALRKVGKADLAMKLMHSKIGI 636


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 185/398 (46%), Gaps = 38/398 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ +I    + + Y  M ++++ M  +  L  + T+  I+    + ++  EA   FN ++
Sbjct: 266 YNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLK 325

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
             G   +   +  ++  LC+  +  +A+++ F+ M     P++ TY+ +L G  K  +  
Sbjct: 326 DRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFE 385

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           RA E++ EM + G     VT   ++  LC  G+ DEA  + K M  T  +  +  Y+ L+
Sbjct: 386 RACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLI 445

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +  E ++++ ++   E+        V++Y  LI   CK   F+   R+L DM+SKG+ 
Sbjct: 446 RGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLH 505

Query: 338 PN-----------------------------------SRTCNIILNGLIGRGETDEAYRV 362
           PN                                   + TCN I++ L  RG++DEA  +
Sbjct: 506 PNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEM 565

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F++M +   +ADA TY  +I+ FC+ G++ K+  +   +  +   PS  +++ LI  LC 
Sbjct: 566 FKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQ 625

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            G    +  L  DM+ KGI P       L   L K+GR
Sbjct: 626 NGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGR 663



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 3/303 (0%)

Query: 172 LLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+ A C S  V +  E+ +  +K    P + TY+ L+ G+ +  N     E+   M+   
Sbjct: 234 LIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARN 293

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P I TY  +++ LCK     EA  +   +      P   +Y+ ++H         +A 
Sbjct: 294 HLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEAR 353

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             + EM   G+  +   YN ++    K+  F+    +  +M +KG    + TCN I++ L
Sbjct: 354 KLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISEL 413

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             RG++DEA+ VF++M +   +ADA TY  +I+ FC+ G++++   +   +  +   PS+
Sbjct: 414 CSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSV 473

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             + +LI   C  G    +  LL DM  KG+ P+  T+  +    +K G  E V +   E
Sbjct: 474 SLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNE 533

Query: 469 KMN 471
             N
Sbjct: 534 TCN 536



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 158/381 (41%), Gaps = 5/381 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM---RTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           S+ A +S++    K  + +++++    M    T    N ET   +++ +    +V     
Sbjct: 190 SIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAFCDSGQVARGYE 249

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
             N   K G+      +N L++  C++KN     E+   M  R  +P   TY  ++ G  
Sbjct: 250 LLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLC 309

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K+     A  +F ++ D G  PD V Y  M+  LC+ G   EA  +   M     +P ++
Sbjct: 310 KNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAY 369

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++H        E A + + EM   G        N +I   C   K    + V K M
Sbjct: 370 TYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKM 429

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
           +  G+  ++ T N ++ G    G+ DE   +   ++ +  +     Y ++I   C+ G+ 
Sbjct: 430 SETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDF 489

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E A ++   M  K   P+ +T+  +++G    G       L  +   KG   +  T  K+
Sbjct: 490 EAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKI 549

Query: 451 RKLLIKEGREDVLKFLQEKMN 471
              L   G+ D    + +KM+
Sbjct: 550 ISELCSRGKSDEASEMFKKMS 570



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 105/228 (46%), Gaps = 1/228 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++R + +  KV+E +   N +       +++ +  L+   CK  +   A+ +   M
Sbjct: 440 TYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDM 499

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             + + P++ TY  +L G  K  +    RE++ E  + G      T   ++  LC  G+ 
Sbjct: 500 SSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKS 559

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEA  + K M  T  +  +  Y+ L+  +  E ++  +++   E+   G+    + Y +L
Sbjct: 560 DEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASL 619

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           I   C+    ++  R+  DM SKG+ P++     +++GL  +G   E 
Sbjct: 620 IIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEG 667


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 168/337 (49%), Gaps = 3/337 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y ++ ++ +A   F +M + G  +N  ++  L+   C+   + +A E+F  M
Sbjct: 227 TYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQM 286

Query: 193 K-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K D   PD  TY++L+  + +      A + F EMV+ G  P++ TY +++D  CK G++
Sbjct: 287 KEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKM 346

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DE + ++ +M       +   ++ L+  Y     +EDA+     M+ N +  +   YN L
Sbjct: 347 DEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNEL 406

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I  FC+         +L  M    ++PN  T N +++GL      D A+R+   MIK   
Sbjct: 407 ICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGF 466

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  T+   I   C+ G++E+A +V++ +K K    +   ++ LI+G C     SD+ +
Sbjct: 467 VPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHL 526

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
           L + M+ +G  P+  TF  L   L KEG+ ED +  +
Sbjct: 527 LFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLV 563



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 199/475 (41%), Gaps = 60/475 (12%)

Query: 4   VYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSP 63
           ++H++N+  +     L+ ++S  P++   D    I  I+L  P+   + + +     ++P
Sbjct: 11  LHHNQNQNQNLFHLLLKPFSSLSPNSLQQDLPSQIFTILLQ-PQWRKNPSFNTLIPSLTP 69

Query: 64  EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY--------------------HSM 103
             +  +          A  FFKW   Q  + H+V +Y                    +SM
Sbjct: 70  THLSSLFNNPNLHPLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSM 129

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
           I+S     + + + +L+     +  L+V ++  +    +R   ++E    F  M   GV 
Sbjct: 130 IKSCVSSHEARFVLNLLT--HHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVE 187

Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
            NL +FN +++A CK  NV  A+  F   MK  F  DS TY+ L+ G+            
Sbjct: 188 PNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGY------------ 235

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
                                  CK   + +A  + + M    C      Y+ L+H +  
Sbjct: 236 -----------------------CKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCE 272

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             +I++A++ F +M+++G   DV  Y  L+ AFC+  K     +  ++M   G+ PN  T
Sbjct: 273 VGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYT 332

Query: 343 CNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
             ++++     G+ DE   +   M+ K   +    +  +I  +C+ G +E A  V   MK
Sbjct: 333 YTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMK 392

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           L +  P+  T++ LI G C K  +  +  LL  M E  + P+  T+  L   L K
Sbjct: 393 LNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCK 447



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 181/403 (44%), Gaps = 30/403 (7%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNV 156
           R Y+ +I    + +       L+N M   ++  N+ T+  ++    + + V+ A    ++
Sbjct: 401 RTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHL 460

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPN 215
           M K G   +   F   +  LCK   V +A ++F+ +K++    ++  Y+ L++G+ K   
Sbjct: 461 MIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEK 520

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A  +F+ M+  GC P+ +T+ +++D L K G+V++A+ +V  M     +PT   Y++
Sbjct: 521 FSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTI 580

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+     E+  + A     +M  +G   +V  Y A I A+C+  +      ++  +  +G
Sbjct: 581 LIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEG 640

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC--------Q 386
           +  +S   ++++N     G+ D A+ V  RM    CE    TY++++K            
Sbjct: 641 ILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGM 700

Query: 387 GGELEKA------FKVWKY------------MKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
           G +L           +WK             M  +  +P+++T+S LI GLC    +S +
Sbjct: 701 GLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLA 760

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKM 470
             L   M E GI PS      L     K G  E+ L+ L   M
Sbjct: 761 FRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMM 803



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 180/392 (45%), Gaps = 29/392 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L K R     W L + M +   + +  TFC  +    ++ KVE+A   F  +
Sbjct: 437 TYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESL 496

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
           ++     N   +  L+   CK++    A  +F  M  +   P+S T+++LL+G  K+  +
Sbjct: 497 KEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKV 556

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +   M      P + TY I+++ + +    D A   +  M S+ C+P    Y+  
Sbjct: 557 EDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAF 616

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y  + R+ +A +  +++++ GIL D  +Y+ L+ A+    +  + + VL  M   G 
Sbjct: 617 IKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGC 676

Query: 337 APNSRTCNIILNGLI-------GRG--------ETDEA-----------YRVFRRMIKL- 369
            P+ +T +I+L  LI       G G          D A             +F +M++  
Sbjct: 677 EPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQG 736

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
           C  + +TY+ +IK  C+   L  AF+++ +MK     PS +  + L++  C  G+  ++ 
Sbjct: 737 CVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEAL 796

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            LL+ M+E       E++  L   L ++G ++
Sbjct: 797 RLLDSMMEYNHLAHLESYKLLVCGLFEQGNQE 828



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 123/306 (40%), Gaps = 51/306 (16%)

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           +  ++G    + ++  LL  L ++  +R A+ + + M    +   +              
Sbjct: 93  IHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHE-------------- 138

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              AR +   +     +  + +Y  +  VL + G +DE   + K M +    P    ++ 
Sbjct: 139 ---ARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNT 195

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +V+ +     +  A   F  + K G   D   Y +LI  +CK ++  + Y+V + M  +G
Sbjct: 196 MVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEG 255

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
                                             C  +  +YT +I  FC+ G++++A +
Sbjct: 256 ----------------------------------CLRNEVSYTNLIHGFCEVGKIDEALE 281

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  MK     P + T++VL+   C+ G  +++    E+M+E GI P+  T+  L     
Sbjct: 282 LFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFC 341

Query: 456 KEGRED 461
           K G+ D
Sbjct: 342 KVGKMD 347



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 149/375 (39%), Gaps = 71/375 (18%)

Query: 71  EKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRML 129
           EKF +A  L    FK    +  + +S+  ++ +++ L K  + +    LV+ M +     
Sbjct: 519 EKFSDAHLL----FKRMLFEGCFPNSI-TFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKP 573

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            V T+ I++ +  R    + A    + M   G   N+  +   + A C+   + +A+E+ 
Sbjct: 574 TVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMV 633

Query: 190 DCMK------DRFI------------------------------PDSKTYSILL------ 207
             +K      D FI                              P  +TYSILL      
Sbjct: 634 VKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFE 693

Query: 208 ----EGWGKDPN----------------LPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
               EG G D N                      +F +MV+ GC P++ TY  ++  LCK
Sbjct: 694 KYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCK 753

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              +  A  +   M  +   P+  I++ L+ +       E+A+     M +   LA +  
Sbjct: 754 VEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLES 813

Query: 308 YNALI-GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           Y  L+ G F + N+ K    + + + S G   +     ++L+GL+ +G  DE  ++   M
Sbjct: 814 YKLLVCGLFEQGNQEK-AEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIM 872

Query: 367 IKL-CEADADTYTMM 380
            K  C   +DT+TM+
Sbjct: 873 EKTGCRLHSDTHTML 887


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 192/411 (46%), Gaps = 12/411 (2%)

Query: 60  RVSPEIVEDVLEKFRNAGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           +++P  VE +L   R+       F    AE    + H    +  MI  L    +++   +
Sbjct: 12  QITPSKVEQLLRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEE 71

Query: 119 LVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           ++N M+ ++  +  E F  I R Y RV    +A+  F+ M  +G      ++  + + L 
Sbjct: 72  MLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILV 131

Query: 178 KSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPN-LPRAREIFREMVDTGCNPDI 235
           +   ++ A   +  M++  +  S  + ++L++   K+   +  A EIFREM   GC+PD 
Sbjct: 132 EENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDS 191

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TYG +++ LCK G+  EA  + K MD+  C P+   YS L+H       +++A+  F +
Sbjct: 192 YTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDK 251

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+K  I  +V  Y++L+   CK         +L+ M  K   PN  T + ++NGL   G+
Sbjct: 252 MKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGK 311

Query: 356 TDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
             EA     RM ++  + DA  Y  +I  FC   + ++A      M L +  P+  T+S+
Sbjct: 312 LAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSL 371

Query: 415 -------LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
                  ++ GLC  G ++ S  L   M  +GI     TF  L K   K+G
Sbjct: 372 HVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKG 422



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 180 KNVRKAQEIFDCMK----DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           +++RKA+ IFD       + F  D  T+ +++           A E+   M +  C    
Sbjct: 26  RDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCR--- 82

Query: 236 VTYGIMVDVLCKAGRVD---EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           +T  I + +    GRV    +A+ +   M+   C+PT   Y  +      EN+++ A+  
Sbjct: 83  ITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSF 142

Query: 293 FLEMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
           +  M + G+   V   N LI A CK +      + + ++M  +G  P+S T   ++NGL 
Sbjct: 143 YKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLC 202

Query: 352 GRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G+T EA  +F+ M  K C     TY+ ++   CQ G +++A  ++  MK K   P++ 
Sbjct: 203 KLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVF 262

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           T+S L++GLC  G   ++  LLE M+ K  +P+  T+  L   L KEG+
Sbjct: 263 TYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGK 311



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 102/267 (38%), Gaps = 38/267 (14%)

Query: 215 NLPRAREIFREM---VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           +L +A+ IF         G   D  T+G+M+  L  A     A  ++  M    CR T  
Sbjct: 27  DLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEE 86

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           I+  +   YG  +   DA+  F +M   G       Y ++     + N+ K      K M
Sbjct: 87  IFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYM 146

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ-GGEL 390
              GV  +  + N+                                  +IK  C+  G +
Sbjct: 147 REMGVRQSVVSLNV----------------------------------LIKALCKNSGTI 172

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + AF++++ M  +   P  +T+  LINGLC  G   ++  L ++M  KG  PS  T+  L
Sbjct: 173 DAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCL 232

Query: 451 RKLLIKEGREDVLKFLQEKMNLLVKEP 477
              L + G  D    L +KM     EP
Sbjct: 233 MHGLCQAGNVDEAMGLFDKMKKKAIEP 259



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 15/218 (6%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           K++  E +V  Y S+++ L K        +L+  M R +   N+ T+  ++    +  K+
Sbjct: 253 KKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKL 312

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI----PDSKTY 203
            EAV T + M+  G+  +   +  +++  C   N+RK QE    + +  +    P+  T+
Sbjct: 313 AEAVETLDRMKLQGLKPDAGLYGKIINGFC---NIRKFQEAATYLDEMVLGQISPNRVTW 369

Query: 204 SI-------LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           S+       +++G   + NL R+ +++  M   G + D  T+  +V   CK G + +A  
Sbjct: 370 SLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAAR 429

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           I   M    C P   I+S +V  +    ++ +A ++ +
Sbjct: 430 IFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREAFESIV 467


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 167/338 (49%), Gaps = 3/338 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           F  ++   A+++     +     M  +GV  N+   N L+++ C    V  A  +    +
Sbjct: 68  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL 127

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    PD  T++ L+ G   +  +  A  +F +M+D G  P++VTYG +++ LCK G   
Sbjct: 128 KLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTS 187

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A+ +++SM+   C+P   IY+ ++ +   + ++ +A + F +M   GI  D+  Y +L+
Sbjct: 188 AAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 247

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
            A C   ++K+V  +L  M +  + P+    + +++ L   G+  EA+ +   MI+   E
Sbjct: 248 HALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 307

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYT ++   C   E+++A KV+  M  K F P + +++ LING C    +  +  L
Sbjct: 308 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 367

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            E+M  K   P  +T+  L   L   GR +D +    E
Sbjct: 368 FEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHE 405



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 212/466 (45%), Gaps = 14/466 (3%)

Query: 5   YHSRN---KMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSG 58
           +HS++     +   +S   R     P    +D AK   SI+K+   S  + L T +D  G
Sbjct: 36  FHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFG 95

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQ 114
           +  +   +  ++  F +   + F F   A+  +  ++     + ++I  L    KI +  
Sbjct: 96  VPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEAL 155

Query: 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
            ++D    +      NV T+  ++    +V     A+     M++     ++  +  ++ 
Sbjct: 156 HLFD--KMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIID 213

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           +LCK + V +A  +F  M  + I PD  TY+ L+              +  +MV++   P
Sbjct: 214 SLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILP 273

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+V +  +VD LCK G+V EA  IV  M      P    Y+ L+  + +++ +++AV  F
Sbjct: 274 DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 333

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             M + G   DV  Y  LI  +CK +K      + ++M  K   P+++T N ++ GL   
Sbjct: 334 DMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHV 393

Query: 354 GETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G   +A  +F  M+   +  D  TY++++   C+   LE+A  + K ++     P +  +
Sbjct: 394 GRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVY 453

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +++I+G+C  G +  +  L  ++  KG+ PS  T+  +   L K G
Sbjct: 454 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 499



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 124/239 (51%), Gaps = 1/239 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  +M  +    +++EAV  F++M + G   ++ ++  L++  CK   + KA  +F
Sbjct: 309 DVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLF 368

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M +  +IPD+KTY+ L+ G      L  A  +F EMV  G  PD+VTY I++D LCK 
Sbjct: 369 EEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 428

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             ++EA+ ++K+++++   P   +Y++++        +E A D F  +   G+   V  Y
Sbjct: 429 RHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTY 488

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           N +I   CK        ++  +M+    +P+  T N I  G +   ET  A ++   M+
Sbjct: 489 NIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEML 547


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 193/429 (44%), Gaps = 15/429 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           L+ AL+       PE+V  V+ + ++   +A  +F+W E++    HS  AY++++  +A+
Sbjct: 86  LEDALNTFDEMPQPELVVGVIRRLKDV-RVALHYFRWVERKTKQLHSPEAYNALLMLMAR 144

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIM-RKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
            R  + +  ++  M           CI M   + + +K+ EA      M+K+      +A
Sbjct: 145 TRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSA 204

Query: 169 FNGLLSALCKSKN-------VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
           +  L+ AL  +         +R+ QEI       +      ++ L+  + ++  +  A  
Sbjct: 205 YTTLIGALSAAHEADPMLTLLRQMQEI------GYEVTVHLFTTLICVFAREGRVDAALS 258

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +  EM     N D+V Y + +D   K G+VD A      + S    P    ++ ++    
Sbjct: 259 LLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLC 318

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              R+++AV+ F E++ N  +  V  YN +I  +    KF   Y +L+    KG  P+  
Sbjct: 319 KAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVI 378

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
             N IL  L  +G+ +EA R+   M      +  +Y ++I M C+ GELE A KV   MK
Sbjct: 379 AYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMK 438

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                P++ T +++I+ LC    + ++C +   +  K   P   TF  L   L + G+ +
Sbjct: 439 EAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVN 498

Query: 462 VLKFLQEKM 470
               L EKM
Sbjct: 499 DAYMLYEKM 507



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 231/512 (45%), Gaps = 45/512 (8%)

Query: 14  GCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKF 73
           G I  +R++      +       ++S    + P + L   + + G  V+  +   ++  F
Sbjct: 188 GVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVF 247

Query: 74  RNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
              G +        E + N +   +  Y+  I+   K+ +  + W   + ++++ ++  +
Sbjct: 248 AREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDD 307

Query: 133 -TFCIIMRKYARVQKVEEAV---------------YTFNVM------------------- 157
            TF  ++    + ++V+EAV               Y +N M                   
Sbjct: 308 VTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLER 367

Query: 158 -QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
            ++ G   ++ A+N +L+ L +   V +A  I + MK    P+  +Y+IL++   K   L
Sbjct: 368 QKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGEL 427

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++   M + G  P+I+T  IM+D LCKA R+DEA  I   +D  VC P S  +  L
Sbjct: 428 EAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSL 487

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +   G   ++ DA   + +M  +G   +  +Y +LI  F K  + ++ +++ K+M  +G 
Sbjct: 488 IDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGC 547

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
           +P+    N  ++ +   GE ++   +F  +  +    D  +Y+++I    +GG  +  +K
Sbjct: 548 SPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYK 607

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           ++  MK +        ++++I+G C  G V+ +  LLE+M  KG++P+  T+G +   L 
Sbjct: 608 LFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLA 667

Query: 456 KEGREDVLKFLQEK-------MNLLVKEPLCD 480
           K  R D    L E+       +N++V   L D
Sbjct: 668 KIDRLDEAYMLFEEAKSKAVDLNVVVYSSLID 699



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 162/323 (50%), Gaps = 2/323 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N   +  ++R + +  + E+    +  M   G + +L   N  +  + K+  + K + +F
Sbjct: 515 NAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALF 574

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +K +   PD ++YSIL+ G  K        ++F EM + G + D   Y I++D  CK+
Sbjct: 575 EEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKS 634

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+V++A  +++ M +   +PT   Y  ++      +R+++A   F E +   +  +V +Y
Sbjct: 635 GKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVY 694

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           ++LI  F K  +    Y +L+++  KG+ PN+ T N +L+ L+   E DEA   F+ M  
Sbjct: 695 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKN 754

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           L C  +  TY++M+   C+  +  KAF  W+ M+ +   P+  T++ +I+GL   G V +
Sbjct: 755 LKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLE 814

Query: 428 SCVLLEDMIEKGIRPSGETFGKL 450
           +  L E     G  P    +  +
Sbjct: 815 AKDLFERFKSSGGIPDSACYNAM 837



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 199/443 (44%), Gaps = 72/443 (16%)

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
           +K++    SV AY+ ++  L +  + +    ++ AM+     N+ ++ I++    +  ++
Sbjct: 368 QKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGEL 427

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSIL 206
           E A+   + M++ G+  N+   N ++  LCK++ + +A  IF  +  +   PDS T+  L
Sbjct: 428 EAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSL 487

Query: 207 LEGWGKD-------------------PN------LPR----------AREIFREMVDTGC 231
           ++G G+                    PN      L R            +I++EM+  GC
Sbjct: 488 IDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGC 547

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +PD++     +D + KAG +++   + + + +    P    YS+L+H        +D   
Sbjct: 548 SPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYK 607

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F EM++ G+  D   YN +I  FCK+ K    Y++L++M +KG+ P   T   +++GL 
Sbjct: 608 LFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLA 667

Query: 352 GRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                DEAY +F     K  + +   Y+ +I  F + G +++A+ + + +  K   P+ +
Sbjct: 668 KIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTY 727

Query: 411 T-----------------------------------FSVLINGLCDKGIVSDSCVLLEDM 435
           T                                   +S+++NGLC     + + V  ++M
Sbjct: 728 TWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEM 787

Query: 436 IEKGIRPSGETFGKLRKLLIKEG 458
            ++G++P+  T+  +   L + G
Sbjct: 788 QKQGLKPNTITYTTMISGLARVG 810



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 2/264 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+Q      RAY+ +I+   K  +    + L+  M+TK +   V T+  ++   A++ ++
Sbjct: 613 KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRL 672

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSIL 206
           +EA   F   +   V  N+  ++ L+    K   + +A  I +  M+    P++ T++ L
Sbjct: 673 DEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCL 732

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           L+   K   +  A   F+ M +  C P+ VTY IMV+ LCK  + ++A    + M     
Sbjct: 733 LDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGL 792

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P +  Y+ ++        + +A D F   + +G + D A YNA+I     ANK  + Y 
Sbjct: 793 KPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYI 852

Query: 327 VLKDMNSKGVAPNSRTCNIILNGL 350
           + ++   KG    S+TC ++L+ L
Sbjct: 853 LFEETRLKGCRIYSKTCVVLLDAL 876



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 14/326 (4%)

Query: 82  CFFKWAE-----------KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-L 129
           C FK  E           K Q     VR+Y  +I  L K    +  + L   M+ + + L
Sbjct: 560 CVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHL 619

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +   + I++  + +  KV +A      M+  G+   +  +  ++  L K   + +A  +F
Sbjct: 620 DTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLF 679

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  K + +  +   YS L++G+GK   +  A  I  E++  G  P+  T+  ++D L KA
Sbjct: 680 EEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKA 739

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +DEAL   ++M +  C P    YS++V+      +   A   + EM+K G+  +   Y
Sbjct: 740 EEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITY 799

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
             +I    +         + +   S G  P+S   N ++ GL    +  +AY +F    +
Sbjct: 800 TTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRL 859

Query: 368 KLCEADADTYTMMIKMFCQGGELEKA 393
           K C   + T  +++    +   LE+A
Sbjct: 860 KGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 28/188 (14%)

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADV---------------------------AMY 308
           ++ TY     +EDA++TF EM +  ++  V                             Y
Sbjct: 76  VLDTYPWGAALEDALNTFDEMPQPELVVGVIRRLKDVRVALHYFRWVERKTKQLHSPEAY 135

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           NAL+    +    + + ++L++M+  G  P++ TC  ++   +   +  EA+ V   M K
Sbjct: 136 NALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRK 195

Query: 369 LCEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                A   YT +I       E +    + + M+   +  ++H F+ LI     +G V  
Sbjct: 196 FKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDA 255

Query: 428 SCVLLEDM 435
           +  LL++M
Sbjct: 256 ALSLLDEM 263


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 189/425 (44%), Gaps = 43/425 (10%)

Query: 79  LAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRMLNVET 133
           LA   F +A K    + H+   YHS++  L++ R +     +M DL N+    +      
Sbjct: 64  LALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIK-CGENL 122

Query: 134 FCIIMRKYARVQKVEEAVYTF------------------------------------NVM 157
           F  ++R Y    + E ++  F                                    N  
Sbjct: 123 FIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSK 182

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           + +G+T N+   N L+ ALCK  ++  A ++ D +     +P+  TY+ +L G+    ++
Sbjct: 183 ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDM 242

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +  EM+D G  PD  TY +++D  CK GR  EA  ++  M+     P    Y V+
Sbjct: 243 ESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVM 302

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +     E +  +A + F EM +   + D ++   +I A C+ +K      + + M     
Sbjct: 303 IRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 362

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            P++   + +++ L   G   EA ++F    K       TY  +I   C+ GEL +A ++
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTYNTLIAGMCEKGELTEAGRL 422

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           W  M  ++  P+  T++VLI GL   G V +   +LE+M+E G  P+  TF  L + L K
Sbjct: 423 WDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQK 482

Query: 457 EGRED 461
            G+E+
Sbjct: 483 LGKEE 487



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 4/265 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  T+ ++M  Y ++ +  EA    + M+K  +  N   +  ++ ALCK K   +A+ +F
Sbjct: 260 DATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMF 319

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M +R F+PDS     +++   +D  +  A  ++R+M+   C PD      ++  LCK 
Sbjct: 320 DEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKE 379

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GRV EA  +    +     P+   Y+ L+     +  + +A   + +M +     +   Y
Sbjct: 380 GRVTEARKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTY 438

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI    K    K   RVL++M   G  PN  T  I+  GL   G+ ++A ++    + 
Sbjct: 439 NVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVM 498

Query: 369 LCEADADTYTMMIKMFCQGGELEKA 393
             + D +++ + +K F   GEL+K 
Sbjct: 499 NGKVDKESWELFLKKF--AGELDKG 521



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 134/314 (42%), Gaps = 38/314 (12%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGKDPNLP 217
           G T N   ++ +L  L +++     + +   +++ + P       +  LL  +G      
Sbjct: 78  GFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYE 137

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            +  IF  + D G    + +   +++VL +  R D                       LV
Sbjct: 138 SSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFD-----------------------LV 174

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           H        +++ ++F      GI  ++   N L+ A CK N  ++ Y+VL ++ S G+ 
Sbjct: 175 HAM-----FKNSKESF------GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLV 223

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T   IL G + RG+ + A RV   M+ +    DA TYT+++  +C+ G   +A  V
Sbjct: 224 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M+     P+  T+ V+I  LC +    ++  + ++M+E+   P      K+   L +
Sbjct: 284 MDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCE 343

Query: 457 EGREDVLKFLQEKM 470
           + + D    L  KM
Sbjct: 344 DHKVDEACGLWRKM 357



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 1/193 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVM 157
            Y  MI +L K ++     ++ + M  +  +   + C  ++       KV+EA   +  M
Sbjct: 298 TYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKM 357

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            K     + A  + L+  LCK   V +A+++FD  +   IP   TY+ L+ G  +   L 
Sbjct: 358 LKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTYNTLIAGMCEKGELT 417

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  ++ +M +  C P+  TY ++++ L K G V E + +++ M    C P    + +L 
Sbjct: 418 EAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILF 477

Query: 278 HTYGVENRIEDAV 290
                  + EDA+
Sbjct: 478 EGLQKLGKEEDAM 490


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 195/431 (45%), Gaps = 56/431 (12%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           A+ +     S +IV+ VL   R   T +  FF++  KQQN+  +V++Y  ++  L++ R 
Sbjct: 58  AISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRM 117

Query: 113 Y--------------------QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           Y                     ++WD +  +  +   +   F +I++ Y      + A+Y
Sbjct: 118 YDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALY 177

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
            F+ M K G   +L + N LL+ L K                    + +T++        
Sbjct: 178 VFDNMGKCGRIPSLRSCNSLLNNLVK--------------------NGETHT-------- 209

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                 A  ++++M+  G  PD+    IMV+  CK G+VDEA G VK M++    P    
Sbjct: 210 ------AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVT 263

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y  L++ Y     +E A      M + G+  +V  Y  LI  +CK  K     +VL+ M 
Sbjct: 264 YHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ 323

Query: 333 SK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
            +  + P+ R   ++++G    G+ D+A R+   M++L  + +      +I  +C+ GE+
Sbjct: 324 EEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEI 383

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +A  V   M      P  ++++ L++G C +G  S++  L + M+++GI P+  T+  L
Sbjct: 384 HEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTL 443

Query: 451 RKLLIKEGRED 461
            K L + G  D
Sbjct: 444 LKGLCRVGAFD 454



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 188/421 (44%), Gaps = 40/421 (9%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           W  K  +Y     +Y+++++   +       ++L + M  + +   V T+  +++   RV
Sbjct: 396 WNLKPDSY-----SYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTY 203
              ++A+  +++M K GV  +   ++ LL  L K +N   A  ++ D +   F     T+
Sbjct: 451 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 510

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + ++ G  K   +  A EIF +M D GC+PD +TY  ++D  CKA  V +A  +  +M+ 
Sbjct: 511 NTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER 570

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P+  +Y+ L+       R+ +  D   EM   G+  ++  Y ALI  +CK      
Sbjct: 571 EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDK 630

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------CEADAD- 375
            +    +M   G++ N   C+ +++GL   G  DEA  + ++M+         C   +D 
Sbjct: 631 AFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDI 690

Query: 376 -------------------------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                                     Y + I   C+ G+++ A + +  + LK F+P   
Sbjct: 691 RYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNF 750

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T+  LI+G    G V ++  L ++M+ +G+ P+  T+  L   L K    D  + L  K+
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 471 N 471
           +
Sbjct: 811 H 811



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 168/370 (45%), Gaps = 38/370 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  ++  Y  +  VE A      M + GV++N+  +  L+   CK   + +A+++ 
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 190 DCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    +PD + Y +L++G+ +   +  A  +  EM+  G   ++     +++  CK
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G + EA G++  M     +P S+ Y+ L+  Y  E    +A +   +M + GI   V  
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPN---------------------------- 339
           YN L+   C+   F +  ++   M  +GVAP+                            
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 499

Query: 340 ------SR-TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
                 SR T N +++GL   G+  EA  +F +M  L C  D  TY  +I  +C+   + 
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 559

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +AFKV   M+ +   PS+  ++ LI+GL     + +   LL +M  +G+ P+  T+G L 
Sbjct: 560 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 619

Query: 452 KLLIKEGRED 461
               KEG  D
Sbjct: 620 DGWCKEGMLD 629



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 193/439 (43%), Gaps = 42/439 (9%)

Query: 70  LEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR- 127
           +E F  A TL      W +   + +  S   +++MI  L K+ +     ++ + M+    
Sbjct: 485 MENFEGASTL------WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 538

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +  T+  ++  Y +   V +A      M++  ++ ++  +N L+S L KS+ + +  +
Sbjct: 539 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTD 598

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M  R   P+  TY  L++GW K+  L +A   + EM + G + +I+    MV  L 
Sbjct: 599 LLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY 658

Query: 247 KAGRVDEA--------------------------LGIVKSMDS------TVCRPTSFIYS 274
           + GR+DEA                            I K  DS      T   P + +Y+
Sbjct: 659 RLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYN 718

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           + +       +++DA   F  +   G + D   Y  LI  +  A      +R+  +M  +
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR 778

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G+ PN  T N ++NGL      D A R+F ++  K    +  TY  +I  +C+ G ++ A
Sbjct: 779 GLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAA 838

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           FK+   M  +   PS+ T+S LINGLC  G +  S  LL  MI+ G+      +  L + 
Sbjct: 839 FKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898

Query: 454 LIKEGREDVLKFLQEKMNL 472
            I+ G    +  L + M++
Sbjct: 899 YIRSGEMQKIHKLYDMMHI 917



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 176/393 (44%), Gaps = 60/393 (15%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIR-VSPEIVE--DVLEKFRNAGTLAF 81
           EP + +++   S+   +  S ++V +   L + GIR ++P IV    +++ +   G L  
Sbjct: 571 EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDK 630

Query: 82  CFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
            F  + E  +N    ++    +M+  L ++ +      L+  M       + E F     
Sbjct: 631 AFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDI 690

Query: 140 KYARVQKV----EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +YA +QK+    +E+  TF       +  N   +N  ++ LCK+  V  A+  F  +  +
Sbjct: 691 RYAAIQKIADSLDESCKTF-------LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK 743

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            F+PD+ TY  L+ G+    N+  A  +  EM+  G  P+IVTY  +++ LCK+  VD A
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 803

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             +                                   F ++ + G+  +V  YN LI  
Sbjct: 804 QRL-----------------------------------FHKLHQKGLFPNVVTYNTLIDG 828

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
           +CK       +++   M  +G++P+  T + ++NGL   G+ + + ++  +MIK   A  
Sbjct: 829 YCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIK---AGV 885

Query: 375 DT----YTMMIKMFCQGGELEKAFKVWKYMKLK 403
           D+    Y  +++ + + GE++K  K++  M ++
Sbjct: 886 DSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIR 918


>gi|413934769|gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays]
          Length = 539

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 210/473 (44%), Gaps = 41/473 (8%)

Query: 25  SEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDV---LEKFRNAGTLAF 81
           + P T    AA  +S +  + P  +L T    SGI  +PE+++ +   L    ++   A 
Sbjct: 7   THPPTPTA-AADVVSILRGADPARLLAT----SGIAPTPELLQHLRPALPTLPDSAIPAL 61

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD--LVNAMRTKRMLNVETFCIIMR 139
              +WA              + +  LA  R +   W   L           +  F  ++R
Sbjct: 62  A--RWAGAA-----------TAVSLLASRRLFAAAWRFLLFQPAAASPPPPLAAFAPLLR 108

Query: 140 KYARVQKVEEAVYTFNVMQKYG--------VTQNLAAFNGLL---SALCKSKNVRKAQEI 188
           +YAR+ + + AV TF  +Q++         VT +  A + L+    ALCK  + R A  +
Sbjct: 109 RYARIGRTDSAVRTFRFLQRHPGRYAVESDVTPSAEALSPLILTIDALCKEGHPRAAALL 168

Query: 189 FDCMK---DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
              ++   D + PD + Y+ILL GW +   L +A +++  M D G  P +VTYG  +D  
Sbjct: 169 VAQIRREDDGWAPDVRIYNILLNGWSRARRLDKAEKLWAAMRDEGVRPTVVTYGTFIDAH 228

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C   R D A+ ++  M            + +V+      R  DA     +    G+  ++
Sbjct: 229 CVMRRPDHAMALLDQMREEGIEANLLTCNPIVYALAHAGRFGDAHKVLEKFPLYGVAPNI 288

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           + +N+L+  +C+        RVLK M  +G++P +RT N            D    ++ +
Sbjct: 289 STFNSLVFGYCRHGDLAGASRVLKAMLGRGISPTARTYNYFFTVFARNLSIDLGMNLYVK 348

Query: 366 MIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+    A D  TY ++IKM C+   LE   ++ + M+   F P + T ++LI+ LC +  
Sbjct: 349 MVSNGYAPDRLTYHLLIKMLCEANRLELTLQMLQEMRNSGFEPDLATSTMLIHLLCRRHQ 408

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             ++    E M E+G+ P   T+  L + L + G   ++K +Q+  +L+   P
Sbjct: 409 FEEAFAEFEQMFERGMVPQYITYRMLMRELKRLG---LVKLVQKLADLMRSVP 458


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 184/376 (48%), Gaps = 11/376 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVE 148
           ++  +  V  +++++++L +  Q +    ++  M +  +   ET F  +M+ +     ++
Sbjct: 178 ERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIK 237

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-----QEIFDCMKDRFIPDSKTY 203
            A+     M + G +      N L++  CK   V  A     QEI     + F PD  TY
Sbjct: 238 AALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEI----ANGFEPDQITY 293

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +  + G  ++ ++  A ++   MV  G +PD+ TY I+V+ LCK G+++EA GI+  M  
Sbjct: 294 NTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVE 353

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
             C P    ++ L+      NR+E+A+D   ++   G+  DV  +N LI A CK    + 
Sbjct: 354 RGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQL 413

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             R+ ++M S G  P+  T N +++ L   G+  +A  + + M    C     TY  +I 
Sbjct: 414 ALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIID 473

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
             C+   +E+A +V+  M L+    +  TF+ LI+GLC    + D+  L+  MI +G++P
Sbjct: 474 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQP 533

Query: 443 SGETFGKLRKLLIKEG 458
           +  T+  +     K+G
Sbjct: 534 NNITYNSILTHYCKQG 549



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 209/458 (45%), Gaps = 48/458 (10%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVR--AYHSMIES 106
           +L+ AL +      PE+ E+++ K   A   A        + +   H VR    HS +ES
Sbjct: 63  MLNAALAREDFAPGPEVYEEIIRKLGAAAGAADLMKVLVTEMRREGHQVRVGVVHSFLES 122

Query: 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV------QKVEEAVYTFNVMQKY 160
            A+ + +    DLV   +   +  ++   ++      V       K+ E VY+   M + 
Sbjct: 123 YARQQLFVDAVDLV-LNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYS--EMGER 179

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRA 219
           G+  ++  FN L+ ALC++  VR A  + + M    + PD  T++ L++G+ ++ ++  A
Sbjct: 180 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAA 239

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV--------------------- 258
             +   M++ GC+P  VT  ++++  CK GRV++ALG +                     
Sbjct: 240 LRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNG 299

Query: 259 -----------KSMDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
                      K MD  V     P  F Y+++V+      ++E+A     +M + G L D
Sbjct: 300 LCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPD 359

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           +  +N LI A C  N+ +    + + +  KG++P+  T NI++N L   G+   A R+F 
Sbjct: 360 ITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFE 419

Query: 365 RM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            M    C  D  TY  +I   C  G+L KA  + K M+      S  T++ +I+GLC K 
Sbjct: 420 EMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKM 479

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            + ++  + + M  +GI  +  TF  L   L K+ R D
Sbjct: 480 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRID 517



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 163/322 (50%), Gaps = 6/322 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    +  ++EEA    N M + G   ++  FN L+ ALC    + +A ++ 
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLA 383

Query: 190 DCMKDRFI-PDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
             +  + + PD  T++IL+    K  DP L  A  +F EM  +GC PD VTY  ++D LC
Sbjct: 384 RQVTLKGLSPDVYTFNILINALCKVGDPQL--ALRLFEEMKSSGCTPDEVTYNTLIDNLC 441

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
             G++ +AL ++K M+S  C  ++  Y+ ++     + RIE+A + F +M+  GI  +  
Sbjct: 442 SLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 501

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            +N LI   CK  +  +  +++  M S+G+ PN+ T N IL     +G+  +A  + + M
Sbjct: 502 TFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTM 561

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
                E D  TY  +I   C+ G  + A K+ + M++K    +   ++ +I  L  +   
Sbjct: 562 TANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNT 621

Query: 426 SDSCVLLEDMIEKGIRPSGETF 447
            D+  L  +M E G  P   T+
Sbjct: 622 RDAMNLFREMTEVGEPPDAFTY 643



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 169/347 (48%), Gaps = 4/347 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  ++++I +L    + +   DL   +  K +  +V TF I++    +V   + A+  F 
Sbjct: 360 ITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFE 419

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDP 214
            M+  G T +   +N L+  LC    + KA ++   M+    P S  TY+ +++G  K  
Sbjct: 420 EMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKM 479

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A E+F +M   G + + +T+  ++D LCK  R+D+A  ++  M S   +P +  Y+
Sbjct: 480 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYN 539

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y  +  I+ A D    M  NG   DV  Y  LI   CKA + +   ++L+ M  K
Sbjct: 540 SILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIK 599

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEK 392
           G+    +  N ++  L  R  T +A  +FR M ++ E  DA TY ++ +  C+GG  + +
Sbjct: 600 GMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIRE 659

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           AF     M  K FIP   +F +L  GL + G+       +E +IEK 
Sbjct: 660 AFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKA 706



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 5/334 (1%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSI 205
           V  A+   +VM + G   ++  +N +++ LCK+  + +A+ I + M +R  +PD  T++ 
Sbjct: 306 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNT 365

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+        L  A ++ R++   G +PD+ T+ I+++ LCK G    AL + + M S+ 
Sbjct: 366 LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG 425

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C P    Y+ L+       ++  A+D   EME  G       YN +I   CK  + +   
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAE 485

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
            V   M+ +G++ N+ T N +++GL      D+A ++  +MI +  + +  TY  ++  +
Sbjct: 486 EVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHY 545

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G+++KA  + + M    F   + T+  LINGLC  G    +  LL  M  KG+R + 
Sbjct: 546 CKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATP 605

Query: 445 ETFGK-LRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           + +   ++ L  +    D +   +E     V EP
Sbjct: 606 KAYNPVIQSLFRRNNTRDAMNLFREMTE--VGEP 637



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 187/424 (44%), Gaps = 52/424 (12%)

Query: 9   NKMIS-GCISFLRRYN-------SSEPSTEALDAAKSISKIMLSSPKV----VLDTALDQ 56
           N+M+  GC+  +  +N       S     EALD A+ ++   LS P V    +L  AL +
Sbjct: 349 NQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLS-PDVYTFNILINALCK 407

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
            G    P++   + E+ +++G                      Y+++I++L  + +    
Sbjct: 408 VG---DPQLALRLFEEMKSSGCTP---------------DEVTYNTLIDNLCSLGKLGKA 449

Query: 117 WDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            DL+  M +     +  T+  I+    +  ++EEA   F+ M   G+++N   FN L+  
Sbjct: 450 LDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 509

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LCK K +  A ++   M  +   P++ TY+ +L  + K  ++ +A +I + M   G   D
Sbjct: 510 LCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVD 569

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTYG +++ LCKAGR   AL +++ M     R T   Y+ ++ +    N   DA++ F 
Sbjct: 570 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFR 629

Query: 295 EMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           EM + G   D   Y  +    C+     +  +  L +M  KG  P   +  ++  GL+  
Sbjct: 630 EMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNL 689

Query: 354 GETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G  D   R    +I+  +  D+D                    +  Y+K+++F  ++ TF
Sbjct: 690 GMDDYFIRAIEIIIEKADLGDSDVSA-----------------IRGYLKIRKFYDALATF 732

Query: 413 SVLI 416
             L+
Sbjct: 733 GRLL 736


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 175/361 (48%), Gaps = 4/361 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           Q    SV +Y ++I +  +  +Y+   +L++ M+  ++  ++ T+  ++   AR     E
Sbjct: 170 QGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWE 229

Query: 150 AVYT-FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            +   F  M+  G+  ++  +N LLSA        +A+ +F  M D   +PD  TYS L+
Sbjct: 230 GLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           E +GK   L +  ++  EM   G  PDI +Y ++++   K+G + EA+G+   M +  C 
Sbjct: 290 ETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCT 349

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  YSVL++ +G   R +D    FLEM+ +    D A YN LI  F +   FK V  +
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
             DM  + + P+  T   I+      G  ++A ++ + M        +  YT +I+ F Q
Sbjct: 410 FHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQ 469

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
               E+A   +  M      PS+ T+  L+      G+V +S  +L  +++ GI  + +T
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529

Query: 447 F 447
           F
Sbjct: 530 F 530



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 151/321 (47%), Gaps = 3/321 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N   + I++    R   +++ +  F+ M   GV++++ ++  L++A  ++     + E+ 
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           D MK D+  P   TY+ ++    +   +      +F EM   G  PDIVTY  ++     
Sbjct: 200 DRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAI 259

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G  DEA  + ++M+     P    YS LV T+G   R+E   D   EM   G L D+  
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITS 319

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN L+ A+ K+   K    V   M + G  PN+ T +++LN     G  D+  ++F  M 
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
               + DA TY ++I++F +GG  ++   ++  M  +   P M T+  +I      G+  
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 427 DSCVLLEDMIEKGIRPSGETF 447
           D+  +L+ M    I PS + +
Sbjct: 440 DARKILQYMTANDIVPSSKAY 460



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 171/356 (48%), Gaps = 3/356 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  ++E+  K+R+ + + DL++ M +   L ++ ++ +++  YA+   ++EA+  F+ MQ
Sbjct: 285 YSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G T N   ++ LL+   +S      +++F  MK     PD+ TY+IL+E +G+     
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
               +F +MV+    PD+ TY  ++    K G  ++A  I++ M +    P+S  Y+ ++
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +G     E+A+  F  M + G    +  Y++L+ +F +    K    +L  +   G+ 
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIP 524

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKV 396
            N  T N  +      G+ +EA + +  M K  C+ D  T   ++ ++     +++  + 
Sbjct: 525 RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQ 584

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           ++ MK    +PS+  + +++          D   LLE+M+   +    +  G++ K
Sbjct: 585 FEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 134/308 (43%), Gaps = 38/308 (12%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+   Y+I++   G++  L +  E+F EM   G +  + +Y  +++   + GR + +L +
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLEL 198

Query: 258 VKSMDSTVCRPTSFIYSVLVHT--------------------YGVENRI----------- 286
           +  M +    P+   Y+ +++                      G++  I           
Sbjct: 199 LDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258

Query: 287 -----EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                ++A   F  M   GI+ D+  Y+ L+  F K  + + V  +L +M S G  P+  
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDIT 318

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           + N++L      G   EA  VF +M    C  +A+TY++++ +F Q G  +   +++  M
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-R 459
           K     P   T+++LI    + G   +   L  DM+E+ I P  ET+  +     K G  
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 460 EDVLKFLQ 467
           ED  K LQ
Sbjct: 439 EDARKILQ 446



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 4/243 (1%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C P+   Y IM+ +L + G +D+ L +   M S     + F Y+ L++ YG   R E ++
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +    M+ + I   +  YN +I A  +    ++ +  +  +M  +G+ P+  T N +L+ 
Sbjct: 197 ELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSA 256

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              RG  DEA  VFR M       D  TY+ +++ F +   LEK   +   M     +P 
Sbjct: 257 CAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPD 316

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK--FL 466
           + +++VL+      G + ++  +   M   G  P+  T+  L  L  + GR D ++  FL
Sbjct: 317 ITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFL 376

Query: 467 QEK 469
           + K
Sbjct: 377 EMK 379



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 114/295 (38%), Gaps = 54/295 (18%)

Query: 90  QQNYEHSVRAYHSMI---------ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
           ++N E  +  Y  +I         E   KI QY    D+V + +         +  ++  
Sbjct: 415 EENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKA--------YTGVIEA 466

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           + +    EEA+  FN M + G   ++  ++ LL +  +   V++++ I   + D  IP +
Sbjct: 467 FGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRN 526

Query: 201 K-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           + T++  +E + +      A + + +M  + C+PD  T   ++ V   A  VDE     +
Sbjct: 527 RDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFE 586

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-------------------- 299
            M ++   P+   Y +++  YG   R +D  +   EM  N                    
Sbjct: 587 EMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDD 646

Query: 300 ----------------GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                           G    +  YNAL+ A     + +   RVL +   +G+ P
Sbjct: 647 SNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFP 701



 Score = 38.1 bits (87), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 25/125 (20%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           L+ L  RG       +F+  + L     + + ++ K F   G+ +++ +++KYM+ + + 
Sbjct: 83  LSSLPPRGSIARCLDIFKNKLSL-----NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWC 137

Query: 407 -PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P+ H ++++I+ L  +G++     + ++M  +G+  S  ++  L     + GR +    
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197

Query: 466 LQEKM 470
           L ++M
Sbjct: 198 LLDRM 202


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 205/442 (46%), Gaps = 41/442 (9%)

Query: 59  IRVSPEIVEDVL--EKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY-QI 115
           I++SP  V  VL  ++ R    +A+ FF W+ KQ+ Y H++  Y S+++ LA  +   +I
Sbjct: 94  IKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRI 153

Query: 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            +      + +  + V     +++ + ++  VEE ++ +  M++ G+   L  +N L++ 
Sbjct: 154 RFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNG 213

Query: 176 LCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           L  +  V  A+ +F+ M+  R  PD  TY+ +++G+ K     +A E  R+M   G   D
Sbjct: 214 LVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEAD 273

Query: 235 IVTYGIMVDV-----------------------------------LCKAGRVDEALGIVK 259
            +TY  M+                                     LCK G+++E   + +
Sbjct: 274 KITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFE 333

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           +M     +P   IY+VL+  Y     +EDA+     M   G   DV  Y+ ++   CK  
Sbjct: 334 NMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNG 393

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
           + +            G+A NS   + +++GL   G  DEA R+F  M  K C  D+  Y 
Sbjct: 394 RVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYN 453

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +I  F +  ++++A  ++K M+ +     +++T+++L++G+  +    ++  L + MI+
Sbjct: 454 ALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMID 513

Query: 438 KGIRPSGETFGKLRKLLIKEGR 459
           KGI P+   F  L   L   G+
Sbjct: 514 KGITPTAACFRALSTGLCLSGK 535



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 176/387 (45%), Gaps = 22/387 (5%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y++MI+   K  Q Q   + +  M T+    +  T+  +++           V  +  M
Sbjct: 241 TYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEM 300

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
            + G+     AF+ ++  LCK   + +   +F+ M +    P+   Y++L++G+ K  ++
Sbjct: 301 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSV 360

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +   M+D G  PD+VTY ++V+ LCK GRV+EAL    +         S  YS L
Sbjct: 361 EDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSL 420

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK-G 335
           +   G   R+++A   F EM + G   D   YNALI AF K  K      + K M  + G
Sbjct: 421 IDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEG 480

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
                 T  I+L+G+      +EA +++  MI K     A  +  +    C  G++ +A 
Sbjct: 481 CDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARAC 540

Query: 395 KVWKYMKLKRFIPSMHTFSV----LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           K+     L    P           +IN LC  G + ++C L + + E+G     E  G++
Sbjct: 541 KI-----LDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERG----REVPGRI 591

Query: 451 RKLLI----KEGREDV-LKFLQEKMNL 472
           R ++I    K G+ D+ +K +  K+ +
Sbjct: 592 RTVMINALRKVGKADLAMKLMHSKIGI 618



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRARE 221
           T NL  +  L+  L  +K+V + + +   +K    P +    + L++ +GK   +     
Sbjct: 131 THNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLW 190

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           ++R+M + G  P + TY  +++ L  A  VD A  + + M+S   +P    Y+ ++  Y 
Sbjct: 191 VWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYC 250

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              + + A++   +ME  G  AD   Y  +I A    + F +   + ++M+ KG+     
Sbjct: 251 KAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPH 310

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
             ++++ GL   G+ +E Y VF  MI K  + +   YT++I  + + G +E A ++   M
Sbjct: 311 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM 370

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             + F P + T+SV++NGLC  G V ++          G+  +   +  L   L K GR 
Sbjct: 371 IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRV 430

Query: 461 DVLKFLQEKMN 471
           D  + L E+M+
Sbjct: 431 DEAERLFEEMS 441



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 149/327 (45%), Gaps = 7/327 (2%)

Query: 48  VVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIE 105
           V L   +D+ GI+V P     V+      G L   +  F+   ++ + + +V  Y  +I+
Sbjct: 294 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGS-KPNVAIYTVLID 352

Query: 106 SLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             AK    +    L++ M  +    +V T+ +++    +  +VEEA+  F+  +  G+  
Sbjct: 353 GYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAI 412

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIF 223
           N   ++ L+  L K+  V +A+ +F+ M ++    DS  Y+ L++ + K   +  A  +F
Sbjct: 413 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 472

Query: 224 REMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
           + M +  GC+  + TY I++  + K  R +EAL +   M      PT+  +  L     +
Sbjct: 473 KRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCL 532

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
             ++  A     E+   G++ D A  + +I   CKA + K   ++   +  +G     R 
Sbjct: 533 SGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGITERGREVPGRI 591

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL 369
             +++N L   G+ D A ++    I +
Sbjct: 592 RTVMINALRKVGKADLAMKLMHSKIGI 618


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 178/393 (45%), Gaps = 2/393 (0%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IM 138
           A  +F+W E++ +      AY S++  +AK  ++     ++  M           CI ++
Sbjct: 111 AISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELI 170

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFI 197
               +  K+ E       M+K+      +A+  L+ AL   +       +F  M++  + 
Sbjct: 171 LSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYE 230

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
                ++ ++  + ++  L  A  +  EM     + DIV Y + +D   KAG+VD A   
Sbjct: 231 VSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKF 290

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              + S    P    Y+ ++      NR+++AV+ F +ME+N  +     YN +I  +  
Sbjct: 291 FHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGS 350

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
           A KF   Y +L+   ++G  P+    N IL  L  +G   EA R F  M K    +  TY
Sbjct: 351 AGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTY 410

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I M C+ GE+E AFKV   MK     P++ T +++I+ LC    + ++C + E M  
Sbjct: 411 NVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNH 470

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           K   P   TF  L   L K+GR D    L E+M
Sbjct: 471 KICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQM 503



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 174/354 (49%), Gaps = 3/354 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + S+I+ L K  +    + L   M  + ++ N   +  +++ + +  + E+    F  M 
Sbjct: 480 FCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMI 539

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
             G + +L   N  +  + K+    K + +F+ +K R FIPD  +YSIL+ G  K     
Sbjct: 540 HRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFAR 599

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              E+F  M + GC  D   Y   +D  CK+G+V++A  +++ M +   +PT   Y  ++
Sbjct: 600 ETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 +R+++A   F E + NG+  +V +Y++LI  F K  +    Y +++++  KG+ 
Sbjct: 660 DGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 719

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           PN  T N +L+ L+   E +EA   F+ M  L    +  TY+++I   C+  +  KAF  
Sbjct: 720 PNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVF 779

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           W+ M+ +   P+  T++ +I GL   G ++++  L E     G  P   ++  +
Sbjct: 780 WQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAI 833



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 189/390 (48%), Gaps = 9/390 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI  L K  +     ++   M   R +     +  ++  Y    K +EA       +
Sbjct: 306 YTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQK 365

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
             G   ++ A+N +L+ L K   + +A   F+ MK    P+  TY++L++   K   +  
Sbjct: 366 ARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEA 425

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++   M + G  P+++T  IM+D LCKA ++DEA  I + M+  +C P    +  L+ 
Sbjct: 426 AFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLID 485

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             G + R++DA   + +M  +  + +  +Y +LI +F K  + ++ +++ K+M  +G +P
Sbjct: 486 GLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSP 545

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           + R  N  ++ +   GET +   +F  +  +    D  +Y+++I    + G   + ++++
Sbjct: 546 DLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELF 605

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             MK +  +   H ++  I+G C  G V+ +  LLE+M  KG +P+  T+G +   L K 
Sbjct: 606 YAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKI 665

Query: 458 GREDVLKFLQE-------KMNLLVKEPLCD 480
            R D    L E       ++N+++   L D
Sbjct: 666 DRLDEAYMLFEEAKSNGLELNVVIYSSLID 695



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 184/375 (49%), Gaps = 4/375 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY++MI       ++   + L+   + +  + +V  +  I+    +  ++ EA+ TF  M
Sbjct: 340 AYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM 399

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
           +K     NL+ +N L+  LCK+  V  A ++ D MK+    P+  T +I+++   K   L
Sbjct: 400 KK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKL 458

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF  M    C+PD VT+  ++D L K GRVD+A  + + M  +   P + +Y+ L
Sbjct: 459 DEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSL 518

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           + ++    R ED    F EM   G   D+ + NA +    KA +      + +++ S+G 
Sbjct: 519 IKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGF 578

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P+  + +I+++GL+  G   E Y +F  M +  C  D   Y   I  FC+ G++ KA++
Sbjct: 579 IPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQ 638

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK K   P++ T+  +I+GL     + ++ +L E+    G+  +   +  L     
Sbjct: 639 LLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFG 698

Query: 456 KEGREDVLKFLQEKM 470
           K GR D    + E++
Sbjct: 699 KVGRIDEAYLIMEEL 713



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 185/420 (44%), Gaps = 38/420 (9%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFC 135
           G L      + E +++   ++  Y+ +I+ L K  + +  + + +AM+   +  NV T  
Sbjct: 387 GRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVN 446

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I++ +  + +K++EA   F  M     + +   F  L+  L K   V  A  +++ M D 
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDS 506

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             IP++  Y+ L++ + K        +IF+EM+  GC+PD+      +D + KAG   + 
Sbjct: 507 DKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKG 566

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             + + + S    P    YS+L+H         +  + F  M++ G + D   YN  I  
Sbjct: 567 RALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDG 626

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR--------- 365
           FCK+ K    Y++L++M +KG  P   T   +++GL      DEAY +F           
Sbjct: 627 FCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELN 686

Query: 366 ---------------------------MIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
                                      M K    +  T+  ++    +  E+ +A   ++
Sbjct: 687 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQ 746

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            MK  +  P+  T+S+LINGLC     + + V  ++M ++G++P+  T+  +   L K G
Sbjct: 747 NMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAG 806



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 3/308 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKV 147
           K + +   V +Y  +I  L K    +  ++L  AM+ +  +L+   +   +  + +  KV
Sbjct: 574 KSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKV 633

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSIL 206
            +A      M+  G    +  +  ++  L K   + +A  +F+  K   +  +   YS L
Sbjct: 634 NKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSL 693

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+GK   +  A  I  E++  G  P++ T+  ++D L KA  ++EAL   ++M +   
Sbjct: 694 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKG 753

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    YS+L++      +   A   + EM+K G+  +   Y  +I    KA        
Sbjct: 754 TPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASS 813

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           + +   + G  P+S + N I+ GL       EAY++F    +K C     T   ++    
Sbjct: 814 LFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQ 873

Query: 386 QGGELEKA 393
           +   LE+A
Sbjct: 874 KDECLEQA 881


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 172/363 (47%), Gaps = 37/363 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            +  ++  + R     EA      M   GV  NL  +N L+  +CK  ++ KA  + + M
Sbjct: 343 AYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM 402

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
               I PD++TY+ ++EG+ K+ N  R +++  EM  +   P   T G++++ LC+ G +
Sbjct: 403 IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSI 462

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A  + + M S   +P + IY+ L+  +  E R ++AV     M+K G+  DV  YN++
Sbjct: 463 EDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSV 522

Query: 312 IGAFCKANKFK----------------NVY-------------------RVLKDMNSKGV 336
           I   CK+ K +                NVY                   R  K+M   G+
Sbjct: 523 IIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGI 582

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
           APN   C  +++G    G T EA  +FR M+ +    D  TY+ +I    + G+L+ A +
Sbjct: 583 APNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAME 642

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +      K  +P + T++ +I+G C +G +  +  L E M +KGI P+  T+  L   L 
Sbjct: 643 LLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLC 702

Query: 456 KEG 458
           K G
Sbjct: 703 KAG 705



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 194/433 (44%), Gaps = 33/433 (7%)

Query: 60  RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           ++SP++V  V+ K  N       FF W + Q  +   ++++  +   L   R +     +
Sbjct: 64  KLSPDVVHSVITKQVNDPKRLLDFFNWVQFQMGFSQKLQSFSILALILCNSRLFSRADSV 123

Query: 120 VNAM----------------RTKRMLNVE---------------TFCIIMRKYARVQKVE 148
           VN M                ++ +  ++                 F +++  Y +    +
Sbjct: 124 VNQMIMMSSGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFD 183

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILL 207
           EAV  F   ++ G    L   NGLLS L K+  +      ++ M +   + D  TY+ L+
Sbjct: 184 EAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLI 243

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               +  N    + +  EM + GC+P +VTY +++  LC+AG VDEA  + K MD     
Sbjct: 244 NAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLV 303

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
              F YS+L+  +G + R  +A     EM   G+      Y ALI  F +       +RV
Sbjct: 304 ADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRV 363

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
            ++M ++GV  N  T N ++ G+   G+ ++A  +   MI +  + D  TY  MI+ + +
Sbjct: 364 KEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLK 423

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
                +   +   MK    +P+ +T  ++INGLC  G + D+  + E M+  G++P+   
Sbjct: 424 EQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVI 483

Query: 447 FGKLRKLLIKEGR 459
           +  L K  ++EGR
Sbjct: 484 YTTLIKGHVQEGR 496



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 170/363 (46%), Gaps = 2/363 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
           ++  +  V  Y+S+I  L K R+ +   D LV  +      NV T+  ++  Y +  +++
Sbjct: 509 KKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQ 568

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A   F  M   G+  N      L+   CK  +  +A  IF CM  R + PD +TYS L+
Sbjct: 569 VADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALI 628

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  ++  L  A E+  E ++ G  PD+ TY  ++   CK G + +A  + + M      
Sbjct: 629 HGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGIS 688

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++       IE A + F  +   G+  +   Y  +I  +CK+      +R+
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
             +M  KGV P+S   + +++G    G T++A  +F   ++   A   +   ++  FC+ 
Sbjct: 749 FDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKS 808

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G++ +A ++ + M  K   P   T+++LI+  C  G + ++     DM ++ + P+  T+
Sbjct: 809 GKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTY 868

Query: 448 GKL 450
             L
Sbjct: 869 TAL 871



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 177/369 (47%), Gaps = 6/369 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           VR Y ++I  L +  + Q   +L++    K ++ +V T+  I+  + +   + +A     
Sbjct: 621 VRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHE 680

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M + G++ N+  +N L++ LCK+  + +A+E+FD +  + +  ++ TY+ +++G+ K  
Sbjct: 681 YMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSG 740

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI-VKSMDSTVCRPTSFIY 273
           NL +A  +F EM   G  PD   Y  ++D   K G  ++AL + ++S+       +S   
Sbjct: 741 NLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSL-- 798

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +    ++ +A     +M    +  D   Y  LI   CK    K   +   DM  
Sbjct: 799 NALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN+ T   +L+G    G   E + +F  MI K  E D  T+++MI    + G+  K
Sbjct: 859 RNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVK 918

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             K+   M  K    S +   VLI+ LC K  VS+   +LE + E+G+  S  T   L +
Sbjct: 919 TLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVR 978

Query: 453 LLIKEGRED 461
              K G+ D
Sbjct: 979 CFHKAGKMD 987



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 148/333 (44%), Gaps = 8/333 (2%)

Query: 90   QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
            Q+    ++  Y+++I  L K  + +   +L + +  K +  N  T+  I+  Y +   + 
Sbjct: 684  QKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLS 743

Query: 149  EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
            +A   F+ M   GV  +   ++ L+    K  N  KA  +F     +    + + + L++
Sbjct: 744  KAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMD 803

Query: 209  GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            G+ K   +  A ++  +MVD    PD VTY I++D  CK G + EA      M      P
Sbjct: 804  GFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMP 863

Query: 269  TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             +  Y+ L+  Y +  R  +    F EM    I  D   ++ +I A  K        +++
Sbjct: 864  NALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLV 923

Query: 329  KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM----IKLCEADADTYTMMIKMF 384
             DM  KG   +   C+++++ L  +    E  +V  ++    + L  A   T + +++ F
Sbjct: 924  DDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLA---TCSTLVRCF 980

Query: 385  CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
             + G+++ A +V K M   +++P     + LIN
Sbjct: 981  HKAGKMDGAARVLKSMVRFKWVPDSTELNDLIN 1013


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 154/315 (48%), Gaps = 18/315 (5%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           MR   + +  T+  ++       KVE+A   F  M+  GVT ++  +  L+ + CK+  +
Sbjct: 449 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 508

Query: 183 RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            +AQ +F+ M+     P   TY+ L+  + K   +P+A +IF  MVD GC P+ VTYG +
Sbjct: 509 EQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGAL 568

Query: 242 VDVLCKAGRVDEA-------LGIVKSMDST---------VCRPTSFIYSVLVHTYGVENR 285
           VD LCKAG + +A       +G   S DS             P    Y  LV      ++
Sbjct: 569 VDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK 628

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           ++ A +    M  +G   +  +Y+ALI  FCKA K  +   V   M   G  P+  T   
Sbjct: 629 VDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 688

Query: 346 ILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +++ +   G  D A +V  +M+K  C  +  TYT MI   C+ GE EKA K+   M+ K 
Sbjct: 689 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 748

Query: 405 FIPSMHTFSVLINGL 419
             P++ T++ LI+GL
Sbjct: 749 CSPNVVTYTALIDGL 763



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 19/311 (6%)

Query: 176 LCKSKNVRKA-QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LC      KA Q I + M+  F+PD+ TYS ++        + +A  +F+EM   G  PD
Sbjct: 432 LCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 491

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           + TY I++D  CKAG +++A  + + M S  C PT   Y+ L+H Y    ++  A D F 
Sbjct: 492 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFH 551

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM----------------NSKGVAP 338
            M   G   +   Y AL+   CKA      + V   +                +   +AP
Sbjct: 552 RMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP 611

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           N  T   +++GL    + D A+ +   M+   CE +   Y  +I  FC+ G+++ A +V+
Sbjct: 612 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 671

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M    ++PS+HT++ LI+ +   G +  +  +L  M++    P+  T+  +   L + 
Sbjct: 672 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 731

Query: 458 GR-EDVLKFLQ 467
           G  E  LK L 
Sbjct: 732 GESEKALKLLS 742



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 24/275 (8%)

Query: 97  VRAYHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
           V  Y  +I+S  K   I Q Q +++ + ++       V T+  ++  Y + ++V +A   
Sbjct: 492 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSP--TVVTYTALIHAYLKAKQVPQANDI 549

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI----------------FDCMKDR-- 195
           F+ M   G   N   +  L+  LCK+ N+ KA E+                F C +DR  
Sbjct: 550 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPC-EDRHT 608

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+  TY  L++G  K   +  A E+   M+ +GC P+ + Y  ++D  CKAG++D A 
Sbjct: 609 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 668

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M      P+   Y+ L+     + R++ A+    +M K+    +V  Y A+I   
Sbjct: 669 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 728

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           C+  + +   ++L  M  KG +PN  T   +++GL
Sbjct: 729 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 763



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 182/437 (41%), Gaps = 34/437 (7%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++  +V  VL   R+A  L   FF WAE+Q  Y H+   Y ++ ++L    + +    L+
Sbjct: 103 LTDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRARDAERLL 162

Query: 121 NAMRTK------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
             +  +      R+LNV     ++R+  R     EA+     ++ +G   +   +N L+ 
Sbjct: 163 REIGEEDREVLGRLLNV-----LVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQ 217

Query: 175 ALCKSKNV-------RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            L  +  V       ++  E   CM DRF      +++  EG   D      RE F+   
Sbjct: 218 VLSSAGQVDLGFRVQKEMSESGFCM-DRFTVGCFAHALCKEGRWADALDMIEREDFK--- 273

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
                 D V    M+  L +A   DEA+  +  M    C P    Y  L+  +  + ++ 
Sbjct: 274 -----LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 328

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
                   M   G   + +++N+L+ ++C    +   Y++L  M + G  P     NI +
Sbjct: 329 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFI 388

Query: 348 NGLIGRGET------DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
             + G+ +       D A +++  M+   C  +        +  C  G+ +KAF++ K M
Sbjct: 389 GSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEM 448

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
             K F+P   T+S +I  LC    V  + +L ++M   G+ P   T+  L     K G  
Sbjct: 449 MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLI 508

Query: 461 DVLKFLQEKMNLLVKEP 477
           +  ++L E+M  +   P
Sbjct: 509 EQAQWLFEEMRSVGCSP 525



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    +  KV+ A    + M   G   N   ++ L+   CK+  +  AQE+F
Sbjct: 612 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 671

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M K  ++P   TY+ L++   KD  L  A ++  +M+   C P++VTY  M+D LC+ 
Sbjct: 672 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 731

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           G  ++AL ++  M+   C P    Y+ L+   G
Sbjct: 732 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 764


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 151/296 (51%), Gaps = 3/296 (1%)

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLE 208
           A+   N M + G   N+  +N +++ LCK   V  A  + D  +     PD  TY+ L++
Sbjct: 384 ALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLID 443

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ K   L  A E+   M   G  PD++TY  +++ LCKAG+ +E + I K+M+   C P
Sbjct: 444 GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTP 503

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y+++V +     ++ +AVD   EM+  G+  DV  +  L   FCK       Y++ 
Sbjct: 504 NIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLF 563

Query: 329 KDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           + M  +  V   + T NII++    +   + A ++F  M    C+ D  TY ++I  FC+
Sbjct: 564 RRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCK 623

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            G + + +K       KRFIPS+ TF  ++N LC K  V ++  ++  M++KGI P
Sbjct: 624 MGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 190/420 (45%), Gaps = 50/420 (11%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR--TKRMLNVETFCII 137
           A   F  A+ +  ++H+   Y  +++ L    +++ M  L++ MR      L    +   
Sbjct: 23  ALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIEA 82

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           M+ Y R  KV+EAV TF  M  Y    ++ + N +++ L +     +A +++  M+DR +
Sbjct: 83  MKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGV 142

Query: 198 -PDSKTYSILLEGWGKDP----------NLP-------------------------RARE 221
             D  TY+I ++ + K            N+P                          ARE
Sbjct: 143 QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARE 202

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV-KSMDSTVCRPTSFIYSVLVHTY 280
           +F EM+     PD+V +  +V VLCK G V E+  ++ K +   VC P  F +++ V   
Sbjct: 203 LFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC-PNLFTFNIFVQGL 261

Query: 281 GVE---------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
             E         +R+ +A +   +M   G   D   YN++I  +CK    ++  RVLKD 
Sbjct: 262 CREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDA 321

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
             KG  P+  T   ++NG    G+ D A  VF+  + K        Y  +IK   Q G +
Sbjct: 322 VFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLI 381

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             A ++   M     +P++ T++++INGLC  G VSD+  L++D I KG  P   T+  L
Sbjct: 382 LPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTL 441



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 159/326 (48%), Gaps = 5/326 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+C ++  + +    + A+  F      G+  ++  +N L+  L +   +  A ++ + M
Sbjct: 332 TYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEM 391

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +   +P+  TY++++ G  K   +  A  +  + +  GC PDI TY  ++D  CK  ++
Sbjct: 392 AENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKL 451

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D A  +V  M S    P    Y+ L++      + E+ ++ F  ME+ G   ++  YN +
Sbjct: 452 DSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNII 511

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--- 368
           + + CKA K      +L +M SKG+ P+  +   +  G    G+ D AY++FRRM K   
Sbjct: 512 VDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYD 571

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
           +C   A TY +++  F +   +  A K++  MK     P  +T+ V+I+G C  G ++  
Sbjct: 572 VCHTTA-TYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQG 630

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLL 454
              L + +EK   PS  TFG++   L
Sbjct: 631 YKFLLENMEKRFIPSLTTFGRVLNCL 656



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 151/314 (48%), Gaps = 11/314 (3%)

Query: 159 KYGVTQNLAAFNGLLSALCK---------SKNVRKAQEIFDCM-KDRFIPDSKTYSILLE 208
           K GV  NL  FN  +  LC+         +  V +A+E    M    F PD  TY+ +++
Sbjct: 244 KRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIID 303

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ K   +  A  + ++ V  G  PD  TY  +++  CK G  D A+ + K       RP
Sbjct: 304 GYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRP 363

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           +  +Y+ L+     +  I  A+    EM +NG L ++  YN +I   CK     +   ++
Sbjct: 364 SIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLV 423

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQG 387
            D  +KG  P+  T N +++G   + + D A  +  RM  +    D  TY  ++   C+ 
Sbjct: 424 DDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKA 483

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+ E+  +++K M+ K   P++ T++++++ LC    V+++  LL +M  KG++P   +F
Sbjct: 484 GKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSF 543

Query: 448 GKLRKLLIKEGRED 461
           G L     K G  D
Sbjct: 544 GTLFTGFCKIGDID 557



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 8/299 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  ++  Y +  K++ A    N M   G+T ++  +N LL+ LCK+    +  EIF
Sbjct: 434 DIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIF 493

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+++   P+  TY+I+++   K   +  A ++  EM   G  PD+V++G +    CK 
Sbjct: 494 KAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKI 553

Query: 249 GRVDEALGIVKSMDST--VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           G +D A  + + M+    VC  T+  Y+++V  +  +  +  A+  F  M+ +G   D  
Sbjct: 554 GDIDGAYQLFRRMEKQYDVCHTTA-TYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNY 612

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y  +I  FCK       Y+ L +   K   P+  T   +LN L  + +  EA  +   M
Sbjct: 613 TYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLM 672

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++         T    +F    ++  A K+     LK+   + +T+ +L +G+ DK I+
Sbjct: 673 LQKGIVPETVNT----IFEADKKVVAAPKILVEDLLKKGHIAYYTYELLYDGIRDKKIL 727



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 138/331 (41%), Gaps = 58/331 (17%)

Query: 184 KAQEIFDCMK--DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           KA E+F+  K  D F   + TY  +++  G         ++  EM +   N   +  G  
Sbjct: 22  KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNA--LLEGAY 79

Query: 242 VDVL---CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT---YGVENRIEDAVDTFLE 295
           ++ +    + G+V EA+   + MD   C P+   ++ +++    +G  N+   A   ++ 
Sbjct: 80  IEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQ---AHKVYMR 136

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G+ +DV  Y   I +FCK  +     R+L++M   G   N+     ++ GL   GE
Sbjct: 137 MRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGE 196

Query: 356 TDEAYRVFRRMIKLCE------------------------------------ADADTYTM 379
            D A  +F  M+  C                                      +  T+ +
Sbjct: 197 HDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNI 256

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFI---------PSMHTFSVLINGLCDKGIVSDSCV 430
            ++  C+ G L++A +  + ++ + ++         P   T++ +I+G C KG+V D+  
Sbjct: 257 FVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANR 316

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +L+D + KG +P   T+  L     K+G  D
Sbjct: 317 VLKDAVFKGFKPDEFTYCSLINGFCKDGDPD 347



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 115/246 (46%), Gaps = 5/246 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I+   K  +     ++VN M ++ M  +V T+  ++    +  K EE +  F  M
Sbjct: 437 TYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAM 496

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
           ++ G T N+  +N ++ +LCK+K V +A ++   MK + + PD  ++  L  G+ K  ++
Sbjct: 497 EEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDI 556

Query: 217 PRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
             A ++FR M      C+    TY I+V    +   ++ A+ +   M ++ C P ++ Y 
Sbjct: 557 DGAYQLFRRMEKQYDVCHT-TATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYR 615

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           V++  +     I       LE  +   +  +  +  ++   C  +K      ++  M  K
Sbjct: 616 VVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQK 675

Query: 335 GVAPNS 340
           G+ P +
Sbjct: 676 GIVPET 681


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 191/433 (44%), Gaps = 7/433 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL+   +RV   +V +V+ K      +   FF+WA K++NYEH    Y ++I  L  +
Sbjct: 78  EKALEVLMLRVDHWLVREVM-KTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLEVV 136

Query: 111 RQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
            QY  MW ++  M    +  V       ++R     + V +A+  F  ++         A
Sbjct: 137 EQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQA 196

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           +N ++  L       K  E+++ M  +    PD+ TYS L+  + K      A ++  EM
Sbjct: 197 YNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEM 256

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            + G  P    Y +++ +  K   V  AL + + M    CRP  F Y+ L+   G   RI
Sbjct: 257 KENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A   F EM++ G   D  + N +I    KA +  +  ++ ++M +    P+  T N I
Sbjct: 317 DEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTI 376

Query: 347 LNGLI-GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  L   +    E    F RM +      + TY+++I  FC+   +EKA  + + M  K 
Sbjct: 377 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKG 436

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           F P    +  LI+ L        +C L +++ E     S   +  + K L K GR D   
Sbjct: 437 FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAI 496

Query: 465 FLQEKMNLLVKEP 477
            + ++MN L   P
Sbjct: 497 NMFDEMNKLGCAP 509



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 206/455 (45%), Gaps = 43/455 (9%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  + +V+    NA  +  A   F +  K +  + + +AY+SMI  L    QY  + +
Sbjct: 157 VTPTELSEVVRMLGNAKMVSKAIAIF-YQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHE 215

Query: 119 LVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M T+     +  T+  ++  + ++ + + A    N M++ G+      +  L++  
Sbjct: 216 LYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLF 275

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  +V  A  +F+ M+ ++  PD  TY+ L+ G GK   +  A   F EM   GC PD 
Sbjct: 276 FKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDT 335

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           V    M++ L KAGR+D+A+ + + M +  C P+   Y+ ++   +  ++R  +    F 
Sbjct: 336 VVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 395

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---------------- 338
            M+++GI      Y+ LI  FCK N+ +    +L++M+ KG  P                
Sbjct: 396 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 339 -------------------NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
                              ++R   +++  L   G  D+A  +F  M KL C  D   Y 
Sbjct: 456 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 515

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++    + G L++A    + M+    IP ++++++++NGL   G    +  +L +M + 
Sbjct: 516 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 575

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            +RP   ++  +   L   G  +    L E+MN L
Sbjct: 576 TVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTL 610



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 134/283 (47%), Gaps = 7/283 (2%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI---FDCMKDRFI- 197
            +  ++++A+  F  M       ++  +N ++ AL +SK+  +A E+   F+ MK+  I 
Sbjct: 346 GKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKS--RASEVPSWFERMKESGIS 403

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P S TYSIL++G+ K   + +A  +  EM + G  P    Y  ++D L KA R D A  +
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + +       ++ +Y+V++   G   R++DA++ F EM K G   DV  YNAL+    +
Sbjct: 464 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADT 376
                     ++ M   G  P+  + NIILNGL   G    A  +   M +     D  +
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVS 583

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           Y  ++      G  E+A K+ + M    F   + T+S ++  +
Sbjct: 584 YNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAI 626



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 36/223 (16%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  ++E+A+     M + G     AA+  L+ AL K+K    A E+F  +
Sbjct: 408 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL 467

Query: 193 KDRF------------------------------------IPDSKTYSILLEGWGKDPNL 216
           K+                                       PD   Y+ L+ G  +   L
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGML 527

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A    R M + GC PDI +Y I+++ L K G    A+ ++ +M  +  RP    Y+ +
Sbjct: 528 DEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTV 587

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           +         E+A     EM   G   D+  Y++++ A  K +
Sbjct: 588 LGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKVD 630


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 182/379 (48%), Gaps = 8/379 (2%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEI 65
           H+R+  +   I+  RR+ ++  S   ++  K I K +   P    + AL      +    
Sbjct: 300 HTRDLNMPAGIAPTRRHFTN--SGHVVEGVKDILKQLRWGPAT--EKALYNLNFSIDAYQ 355

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-R 124
              +L++ ++  ++A  FF W ++Q  + H    Y +M+  L + R++  +  L+  M +
Sbjct: 356 ANQILKQLQDH-SVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVK 414

Query: 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
                NV T+  ++  Y R   + EA+  FN MQ+ G   +   +  L+    K+  +  
Sbjct: 415 DGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDV 474

Query: 185 AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A  +++ M++    PD+ TYS+++   GK  NL  A  +F EMVD GC P+IVTY I++ 
Sbjct: 475 AMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIA 534

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           +  KA     AL + + M +   +P    YS+++   G    +E+A   F EM++N  + 
Sbjct: 535 LQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVP 594

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D  +Y  LI  + KA   +  +     M   G+ PN  TCN +L+  +      +AY + 
Sbjct: 595 DEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLL 654

Query: 364 RRMIKL-CEADADTYTMMI 381
           + M+ L       TYT+++
Sbjct: 655 QNMVTLGLNPSLQTYTLLL 673



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 35/288 (12%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +KD   P+  TY+ L+  +G+   L  A  +F +M + GC PD VTY  ++D+  KAG +
Sbjct: 413 VKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFL 472

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D A+ + + M      P +F YSV+++  G    +  A   F EM   G + ++  YN L
Sbjct: 473 DVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNIL 532

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I    KA  ++   ++ +DM + G  P                                 
Sbjct: 533 IALQAKARNYQTALKLYRDMQNAGFKP--------------------------------- 559

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY++++++    G LE+A  V+  MK   ++P    + +LI+     G V  +   
Sbjct: 560 -DKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEW 618

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPL 478
              M+  G+ P+  T   L    ++  R  D    LQ  + L +   L
Sbjct: 619 YHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSL 666



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 4/251 (1%)

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D  TY  MV +L +A        +++ M    C+P    Y+ L+H+YG  N + +A++ F
Sbjct: 385 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVF 444

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M++ G   D   Y  LI    KA        + + M   G++P++ T ++++N L   
Sbjct: 445 NQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 504

Query: 354 GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G    A+R+F  M+ + C  +  TY ++I +  +    + A K+++ M+   F P   T+
Sbjct: 505 GNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTY 564

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE--K 469
           S+++  L   G + ++  +  +M +    P    +G L  L  K G  E   ++     +
Sbjct: 565 SIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLR 624

Query: 470 MNLLVKEPLCD 480
             LL   P C+
Sbjct: 625 AGLLPNVPTCN 635



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 2/174 (1%)

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D   Y  ++G   +A +F  + ++L+ M   G  PN  T N +++         EA
Sbjct: 381 GFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEA 440

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             VF +M ++ CE D  TY  +I +  + G L+ A  +++ M+     P   T+SV+IN 
Sbjct: 441 LNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINC 500

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKMN 471
           L   G +S +  L  +M+++G  P+  T+  L  L  K    +  LK  ++  N
Sbjct: 501 LGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQN 554



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+ +I   AK R YQ    L   M+      +  T+ I+M        +EEA   F
Sbjct: 525 NIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVF 584

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             M++     +   +  L+    K+ NV KA E +  M +   +P+  T + LL  + + 
Sbjct: 585 FEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRV 644

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT-SFI 272
             LP A  + + MV  G NP + TY +++   C   +    +G    + +    P  +F+
Sbjct: 645 HRLPDAYNLLQNMVTLGLNPSLQTYTLLLSC-CTEAQSPYDMGFCCELMAVSGHPAHAFL 703

Query: 273 YSVLVHTYGVENRIEDAVDTFLEM 296
            S+       +N + D V  FL++
Sbjct: 704 QSMPAAGPDGQN-VRDHVSKFLDL 726


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 198/448 (44%), Gaps = 23/448 (5%)

Query: 19  LRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIV--EDVLEKFRNA 76
           L+R      S +ALD  + ++K               + G+  SP++V    V+  F   
Sbjct: 86  LKRLCDDNRSQQALDLLRMMAK---------------EEGV-CSPDVVTYNTVIHGFFKE 129

Query: 77  GTLA-FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETF 134
           G +   C       QQ +   V  ++S+I +L K R       L+  M    +  N  T+
Sbjct: 130 GKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTY 189

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
             ++  Y+ + + EEA   F  M   G+  ++ ++N  + +LCK    ++A EIF  M  
Sbjct: 190 TSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAA 249

Query: 195 R-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +   P+  TY ILL G+  +         F  M   G   + + + I++D   K G +DE
Sbjct: 250 KGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDE 309

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A+ I+  M      P  F YS L+       R+ DAVD F +M   G+  +  +Y++LI 
Sbjct: 310 AMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQ 369

Query: 314 AFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE- 371
            FC          ++ +M + G+  PN    N I++ +   G   +A+ +F  +  + E 
Sbjct: 370 GFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGER 429

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
           +D   +  +I  +C  GE+ KAF V   M      P   T++ L+NG    G + D   L
Sbjct: 430 SDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNL 489

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +M +K I+P+  T+  +   L + GR
Sbjct: 490 FREMSDKKIKPTTVTYNIILDGLFRAGR 517



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 170/388 (43%), Gaps = 45/388 (11%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF--- 189
           T+ ++M    R ++ E  +  F  + + G+  +  A N +L  LC +K    A ++    
Sbjct: 10  TYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRR 69

Query: 190 ----DCMKDRFI--------------------------------PDSKTYSILLEGWGKD 213
                C+ D F                                 PD  TY+ ++ G+ K+
Sbjct: 70  MTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKE 129

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + +A  ++ EM+  G  PD+VT+  +++ LCKA  VD A  +++ M      P    Y
Sbjct: 130 GKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTY 189

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++H Y    R E+A   F EM   G++ D+  +N+ + + CK  + K    +   M +
Sbjct: 190 TSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAA 249

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG  PN  T  I+L+G    G   +    F  M      A+   +T++I  + + G +++
Sbjct: 250 KGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDE 309

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +   M+ +   P + T+S LI+ LC  G ++D+      MI  G++P+   +  L +
Sbjct: 310 AMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQ 369

Query: 453 LLIKEGREDVLK---FLQEKMNLLVKEP 477
                G  D++K    + E MN  +  P
Sbjct: 370 GFCTHG--DLVKAKELVYEMMNNGIPRP 395



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 192/448 (42%), Gaps = 46/448 (10%)

Query: 55  DQSGIRVSPEIVE-----DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           + +G  + P+IV      D L K   +   A  F+  A K   +  ++  Y  ++   A 
Sbjct: 211 EMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAK--GHRPNIVTYGILLHGYAT 268

Query: 110 IRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
              +  M    N M+   ++ N   F I++  YA+   ++EA+   + MQ  G++ ++  
Sbjct: 269 EGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFT 328

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           ++ L+SALC+   +  A + F+ M    + P++  Y  L++G+    +L +A+E+  EM+
Sbjct: 329 YSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMM 388

Query: 228 ------------------------------------DTGCNPDIVTYGIMVDVLCKAGRV 251
                                               D G   DI+ +  ++D  C  G +
Sbjct: 389 NNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEM 448

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A  ++ +M S    P +F Y+ LV+ Y    RI+D ++ F EM    I      YN +
Sbjct: 449 GKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNII 508

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           +    +A +     ++L +M   G   +  T NIIL GL     TDEA  +F+++  +  
Sbjct: 509 LDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNV 568

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + +  T   MI         E+A  ++  +     +P+  T+ ++I  L  +G V ++  
Sbjct: 569 KFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADN 628

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +   M + G  P         + L+++G
Sbjct: 629 MFSSMEKSGCAPCSRLLNDTIRTLLEKG 656



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 40/275 (14%)

Query: 233 PDIVTYGIMVDVLCKA-----------------------------------GRVDEALGI 257
           P I TYG++++  C+A                                    R D+A+ +
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 258 -VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK-NGILA-DVAMYNALIGA 314
            ++ M    C P +F Y++++     +NR + A+D    M K  G+ + DV  YN +I  
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
           F K  K      +  +M  +G  P+  T N I+N L      D A  + R+M+      +
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TYT MI  +   G  E+A K+++ M  +  IP + +++  ++ LC  G   ++  +  
Sbjct: 186 KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFY 245

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQ 467
            M  KG RP+  T+G L      EG   D++ F  
Sbjct: 246 SMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFN 280



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 122/264 (46%), Gaps = 6/264 (2%)

Query: 100 YHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           ++S++ S+ K   +     ++DLV  +  +   ++  F  ++  Y  V ++ +A    + 
Sbjct: 400 FNSIVHSICKEGRVMDAHHIFDLVKDIGERS--DIIMFNTLIDGYCLVGEMGKAFSVLDA 457

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G+  +   +N L++   KS  +     +F  M D+ I P + TY+I+L+G  +   
Sbjct: 458 MISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGR 517

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++  EM+  G    + TY I++  LC+    DEA+ + + + +   +      + 
Sbjct: 518 TVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNT 577

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++++     R E+A D F  +  +G++ + + Y  +I    K    +    +   M   G
Sbjct: 578 MINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSG 637

Query: 336 VAPNSRTCNIILNGLIGRGETDEA 359
            AP SR  N  +  L+ +GE  +A
Sbjct: 638 CAPCSRLLNDTIRTLLEKGEIVKA 661


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRK 140
           CF+   EK   +  ++   + M+    K+ + Q+ W L   M R     ++ TF I++  
Sbjct: 168 CFYLIKEK--GFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINV 225

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
             +  K+++A      M+  GV  N+  +N ++   C     ++A+ IF  MKD+ + PD
Sbjct: 226 LCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPD 285

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TY+  + G  K+  L  A  +  +M++ G  P+ VTY  ++D  C  G +D+A     
Sbjct: 286 CYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRD 345

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M S     +   Y++ +H   +E R+ DA +   EM + G++ D   +N LI  +C+  
Sbjct: 346 EMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCG 405

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
             K  + +L +M  KG+ P   T   ++  L  R    EA  +F ++ +     D   + 
Sbjct: 406 DAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFN 465

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C  G +++AF++ K M   + +P   T++ L+ G C +G V ++  LL++M  +
Sbjct: 466 ALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRR 525

Query: 439 GIRPSGETFGKL 450
           GI+P   ++  L
Sbjct: 526 GIKPDHISYNTL 537



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 198/436 (45%), Gaps = 45/436 (10%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQ 112
           + + G   + E    +L  F         +  +AE  + N   S+  ++ MI  L K  +
Sbjct: 172 IKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGK 231

Query: 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +   + +  M T  +  NV T+  I+  +    K + A   F  M+  G+  +   +N 
Sbjct: 232 LKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNS 291

Query: 172 LLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRA----------- 219
            +S LCK   + +A  +    ++   +P++ TY+ L++G+    +L +A           
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKG 351

Query: 220 ------------------------REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
                                     + +EM + G  PD VT+ I+++  C+ G    A 
Sbjct: 352 IMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAF 411

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           G++  M     +PT   Y+ L++  G  NR+++A   F ++++ G+L D+ ++NALI   
Sbjct: 412 GLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGH 471

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCE 371
           C        +++LK+M++  V P+  T N ++ G    G+ +EA ++     RR IK   
Sbjct: 472 CANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIK--- 528

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  +Y  +I  + + G+++ AF+V   M    F P++ T++ LI GLC       +  L
Sbjct: 529 PDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEEL 588

Query: 432 LEDMIEKGIRPSGETF 447
           L++M+ KGI P   T+
Sbjct: 589 LKEMVSKGITPDDSTY 604



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 170/342 (49%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ET   ++  + ++ + + A   +  M +  +  +L  FN +++ LCK   ++KA+E  
Sbjct: 180 NIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFI 239

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+   + P+  TY+ ++ G        RAR IF+ M D G  PD  TY   +  LCK 
Sbjct: 240 GHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKE 299

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR++EA G++  M      P +  Y+ L+  Y  +  ++ A     EM   GI+A +  Y
Sbjct: 300 GRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTY 359

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N  I A     +  +   ++K+M  KG+ P++ T NI++NG    G+   A+ +   M+ 
Sbjct: 360 NLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVG 419

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  +    TYT +I +  +   +++A  ++  ++ +  +P +  F+ LI+G C  G +  
Sbjct: 420 KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDR 479

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  LL++M    + P   T+  L +   +EG+ E+  + L E
Sbjct: 480 AFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDE 521



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 2/293 (0%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           F+ L+ A C+ K   +A E F  +K++ F+P+ +T + +L  + K      A  ++ EM 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
                  + T+ IM++VLCK G++ +A   +  M++   +P    Y+ ++H + +  + +
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQ 268

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
            A   F  M+  G+  D   YN+ I   CK  + +    ++  M   G+ PN+ T N ++
Sbjct: 269 RARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALI 328

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +G   +G+ D+AY     MI K   A   TY + I      G +  A  + K M+ K  +
Sbjct: 329 DGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMM 388

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P   T ++LING C  G    +  LL++M+ KGI+P+  T+  L  +L K  R
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNR 441



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +++ L+ A+C+  K          +  KG  PN  TCN +L+  +    T  A+ ++  M
Sbjct: 148 IFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEM 207

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
            ++   +   T+ +MI + C+ G+L+KA +   +M+     P++ T++ +I+G C +G  
Sbjct: 208 FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKF 267

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             + V+ + M +KG+ P   T+      L KEGR
Sbjct: 268 QRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGR 301



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 2/195 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I  L K  + +    L + ++ + +L ++  F  ++  +     ++ A      M
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM 487

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
               V  +   +N L+   C+   V +A+++ D MK R I PD  +Y+ L+ G+ K  ++
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +  EM+ TG +P I+TY  ++  LCK    + A  ++K M S    P    Y  +
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607

Query: 277 VHTYGVENRIEDAVD 291
           +      + +E   D
Sbjct: 608 IEAMETVDDLEGNDD 622


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 181/385 (47%), Gaps = 25/385 (6%)

Query: 60  RVSPEI--VEDVLE------KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           RVSP+I     V+       + R AG +A     W         SV  Y+S+I+   K  
Sbjct: 186 RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG-----LAPSVATYNSLIDGYCKKG 240

Query: 112 QYQIMWDLVNAMRTKRMLNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
               M+ +   M  K M+         TF +++  Y +      AV  F  M++ G+  +
Sbjct: 241 GAGNMYHV--DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS 298

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +N L+S LC    V +  ++ + M+D  + P+  T+  +L+G+ K   +  A +   
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M +    PD+V Y I++DV  + G++++A+ + ++M      P    Y+ L+  +    
Sbjct: 359 GMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
               A     EM++ GI ADV  YN LIGA C   + +   ++L +M+  G+ PN  T N
Sbjct: 419 DWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYN 478

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKL 402
            I+ G   +G    AY +  RM K C   A+  TY + IK FCQ G++++A  +   M  
Sbjct: 479 TIIQGFCDKGNIKSAYEIRTRMEK-CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSD 427
           K  +P+  T+  +  G+ +KG   D
Sbjct: 538 KCLVPNGITYETIKEGMMEKGYTPD 562



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYT-- 153
           +  ++++I  L +I Q +   D+   ++   +  +V T+  ++  Y +        +   
Sbjct: 191 IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDM 250

Query: 154 -FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWG 211
               M + G++     F  L++  CK+ N   A  +F+ MK + I  S  TY+ L+ G  
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            +  +    ++  EM D G +P+ +T+G ++   CK G + +A   +  M      P   
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           IY++L+  Y    ++EDA+     M K GI  +V  YN LI  F ++  +++   +L +M
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
             KG+  +  T N+++  L  +GE  +A ++   M ++  E +  TY  +I+ FC  G +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + A+++   M+  R   ++ T++V I   C  G + ++  LL +M++K + P+G T+  +
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550

Query: 451 RKLLIKEG 458
           ++ ++++G
Sbjct: 551 KEGMMEKG 558



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 162/347 (46%), Gaps = 6/347 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKY 141
           F    E    +  S  + ++++  L   ++  +      +A+R +   ++ TF  ++   
Sbjct: 142 FLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGL 201

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK---SKNVRKAQEIFDCMKDRFI- 197
            R+ ++ +A      ++ +G+  ++A +N L+   CK   + N+     +   M +  I 
Sbjct: 202 CRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGIS 261

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P + T+ +L+ G+ K+ N   A  +F EM   G    +VTY  ++  LC  G+V+E + +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M+     P    +  ++  +  +  + DA D    M +  +  DV +YN LI  + +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             K ++   V + M  KG++PN  T N ++ G    G+   A  +   M  K  EAD  T
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           Y ++I   C  GE+ KA K+   M      P+  T++ +I G CDKG
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKG 488



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 43/340 (12%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           L+ AL ++    +A + F    +   R  P + + + LL G      +  A + FR  + 
Sbjct: 125 LVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALR 184

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVK---------------SMDSTVCR------ 267
              +PDI T+  ++  LC+ G++ +A  + K               S+    C+      
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 268 -----------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
                            PT+  + VL++ Y   +    AV  F EM++ GI A V  YN+
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI   C   K +   +++++M   G++PN  T   +L G   +G   +A      M  + 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            E D   Y ++I ++ + G++E A  V + M  K   P++ T++ LI G    G    + 
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            LL++M EKGI     T+  L   L  +G     +K L E
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 267 RP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           RP TS + ++L    G + R++ A   F    +  +  D+  +N +I   C+  + +   
Sbjct: 153 RPSTSSVNALLAGLVGAK-RVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
            V KD+ + G+AP+  T N +++G   +G     Y V                M++K   
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV---------------DMLLKEMV 256

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G                  P+  TF VLING C     + +  + E+M ++GI  S  
Sbjct: 257 EAG----------------ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVV 300

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
           T+  L   L  EG+ E+ +K ++E  +L
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDL 328



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 96/208 (46%), Gaps = 5/208 (2%)

Query: 61  VSPEIV--EDVLEKFRNAGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           V P++V    +++ +R  G +      K A  ++    +V  Y+ +I   ++   ++   
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            L++ M+ K +  +V T+ +++       +V +AV   + M + G+  N   +N ++   
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           C   N++ A EI   M K R   +  TY++ ++ + +   +  A ++  EM+D    P+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +TY  + + + + G   +  G   S  S
Sbjct: 545 ITYETIKEGMMEKGYTPDIRGCTVSQAS 572


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 175/340 (51%), Gaps = 3/340 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           ++ + ++V + + +   F  M   G+ +++  +N ++  LCK  ++  A+ +F  MK+  
Sbjct: 27  LLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG 86

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F PD  TY+ L++G GK   L     IF +M D  C+PD++TY  +++  CK  R+ +A 
Sbjct: 87  FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 146

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
             +  M +   +P    YS  +  +  E  +++A+  F++M +  +  +   Y +LI A 
Sbjct: 147 EFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDAN 206

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DA 374
           CKA       ++++++   G+  N  T   +L+GL   G   EA  VFR M+    A + 
Sbjct: 207 CKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQ 266

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           +TYT ++  F +  E+E A  + K MK K   P +  +  ++ GLC++  + ++ +L+ +
Sbjct: 267 ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGE 326

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQEKMNLL 473
           + E GI  +   +  L     K G+  + L  L+E ++L+
Sbjct: 327 IKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLV 366



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 6/294 (2%)

Query: 182 VRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           + +A E F  M+  R  P  ++ + LL    K      +R+ F++M   G    + TY I
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M+D LCK G ++ A  +   M      P    Y+ L+  +G    +++ +  F +M+   
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
              DV  YNALI  FCK  +    +  L +M + G+ PN  T +  ++     G   EA 
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 361 RVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           + F  M ++     + TYT +I   C+ G L +A K+ + +       ++ T++ L++GL
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 241

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK----EGREDVLKFLQEK 469
           C++G + ++  +   M+  G+ P+ ET+  L    IK    E  +D+LK ++EK
Sbjct: 242 CEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK 295



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 160/345 (46%), Gaps = 7/345 (2%)

Query: 98  RAYHSMIESLAKIRQYQI---MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           R+ ++++  L+K+ +  +    +  + A   KR  +V T+ I++    +   +E A   F
Sbjct: 22  RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKR--SVFTYNIMIDYLCKEGDLEMARSLF 79

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M++ G T ++  +N L+    K   + +   IF+ MKD    PD  TY+ L+  + K 
Sbjct: 80  TQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKF 139

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +P+A E   EM   G  P++VTY   +D  CK G + EA+     M      P  F Y
Sbjct: 140 ERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTY 199

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+        + +A+    E+ + GI  +V  Y AL+   C+  + K    V + M +
Sbjct: 200 TSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLN 259

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
            GVAPN  T   +++G I   E + A  + + M + C + D   Y  ++   C    LE+
Sbjct: 260 AGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEE 319

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           A  +   +K      +   ++ L++     G  +++  LLE+M++
Sbjct: 320 AKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 193/420 (45%), Gaps = 31/420 (7%)

Query: 50  LDTALDQSGIRVSPEIV--EDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIES 106
           L T + ++G   +P+IV    +++     G L  C   + + K  + +  V  Y+++I  
Sbjct: 78  LFTQMKEAGF--TPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINC 135

Query: 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
             K  +    ++ ++ M+   +  NV T+   +  + +   ++EA+  F  M++  +T N
Sbjct: 136 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 195

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFR 224
              +  L+ A CK+ N+ +A ++ + +    I  +  TY+ LL+G  ++  +  A E+FR
Sbjct: 196 EFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFR 255

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M++ G  P+  TY  +V    KA  ++ A  I+K M     +P   +Y  ++     E+
Sbjct: 256 AMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNES 315

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAF-----------------------CKANKF 321
           R+E+A     E++++GI  +  +Y  L+ A+                       CK N F
Sbjct: 316 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCF 375

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           +   ++  +M  KG+ P+      +++G +  G   EA  +  RMI++  E D   YT +
Sbjct: 376 EVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTAL 435

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I      G+++KA  +   M  K  +P    +  LI      G V ++  L  +M ++G+
Sbjct: 436 IWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 495



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 178/408 (43%), Gaps = 26/408 (6%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K+  +   +  Y+S+I+   K+        +   M+      +V T+  ++  + + +++
Sbjct: 83  KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERM 142

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSIL 206
            +A    + M+  G+  N+  ++  + A CK   +++A + F D  +    P+  TY+ L
Sbjct: 143 PKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSL 202

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++   K  NL  A ++  E++  G   ++VTY  ++D LC+ GR+ EA  + ++M +   
Sbjct: 203 IDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGV 262

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ LVH +     +E A D   EM++  I  D+ +Y  ++   C  ++ +    
Sbjct: 263 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 322

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-------------- 372
           ++ ++   G+  N+     +++     G+  EA  +   M+ L +               
Sbjct: 323 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLF 382

Query: 373 ----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
                     D   YT +I    + G L++A  +   M        +H ++ LI GL   
Sbjct: 383 DEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHS 442

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G V  +  LL++MI KG+ P    +  L K     G+ D    LQ +M
Sbjct: 443 GQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 490


>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Glycine max]
          Length = 449

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 172/356 (48%), Gaps = 19/356 (5%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKV 147
           K+Q + H   +Y +++  LA+ R +  +  ++  M+   M   E+ F  + + Y      
Sbjct: 66  KEQGFRHYYPSYAALLYKLARSRMFDAVETILAHMKDTEMQCRESVFIALFQHYG----P 121

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSIL 206
           E+AV  FN M ++  T+ + +FN LL+ L  +    +A +IF    +  F P++ T++I+
Sbjct: 122 EKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNTVTFNIM 181

Query: 207 LEG------WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
           ++G      WGK      A E+F EM+     P +VTY  ++  LC+ G +D+A+ +++ 
Sbjct: 182 VKGRLAKGEWGK------ACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLED 235

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M           Y++L+       + E+A     +M   G  A    +  L+    K  K
Sbjct: 236 MGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGK 295

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTM 379
            +    +L +M  + + P+  T NI++N L   G+  EAY+V   M I  C  +A TY M
Sbjct: 296 VEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRM 355

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           ++   CQ G+ E A  V   M   R  P   TF+ ++ GL   G +  SC +LE+M
Sbjct: 356 VVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSCFVLEEM 411



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 144/306 (47%), Gaps = 6/306 (1%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
           V+  EEA+  F+  ++ G      ++  LL  L +S+     + I   MKD  +   ++ 
Sbjct: 52  VEDPEEALSLFHRYKEQGFRHYYPSYAALLYKLARSRMFDAVETILAHMKDTEMQCRESV 111

Query: 204 SI-LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            I L + +G +    +A E+F  M    C   I ++  +++VL    R DEA  I     
Sbjct: 112 FIALFQHYGPE----KAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSY 167

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               RP +  ++++V     +     A + F EM +  +   V  YN+LIG  C+     
Sbjct: 168 EMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLD 227

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV-FRRMIKLCEADADTYTMMI 381
               +L+DM  KG   N  T  +++ GL    +T+EA ++ F    + C+A    + +++
Sbjct: 228 KAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLM 287

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G++E+A  +   MK +R  P + T+++LIN LC +G   ++  +L +M   G  
Sbjct: 288 NDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCV 347

Query: 442 PSGETF 447
           P+  T+
Sbjct: 348 PNAATY 353



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 2/233 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVE 148
           Q+  + SV  Y+S+I  L +         L+  M  K +  N  T+ ++M     V+K E
Sbjct: 203 QKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTE 262

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA      M   G       F  L++ L K   V +A+ +   MK R + PD  TY+IL+
Sbjct: 263 EAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILI 322

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
               K+     A ++  EM   GC P+  TY ++VD LC+ G  + AL ++ +M ++   
Sbjct: 323 NYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHC 382

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           P S  ++ +V        I+ +     EMEK  +  D+  +  +I + C  NK
Sbjct: 383 PRSETFNCMVVGLLKSGNIDGSCFVLEEMEKRKLEFDLESWETIIKSACSENK 435


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/531 (25%), Positives = 225/531 (42%), Gaps = 104/531 (19%)

Query: 26  EPSTEALDAAKSISKIMLSSPKV------VLDTALDQSG----------IRVSPEIVEDV 69
           EP  +  D A    + +  SP V      +LD  +D             I++SP  V  V
Sbjct: 8   EPFNDLSDIASKPPQDLKPSPWVHQIMSLLLDGPVDMESRLDLFCNKFLIKLSPNFVSFV 67

Query: 70  LE--KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT-- 125
           L+  + +    LA  FF WA KQ+ Y H+++ Y S I+ LA      I  DL N      
Sbjct: 68  LKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLA------INGDLDNVKSVFC 121

Query: 126 -----KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
                  ++NV     +++ +  +  VEE ++ +  M++ GV  +L  +N LL+ L  S 
Sbjct: 122 KFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSV 181

Query: 181 NVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT-- 237
            +  A+ + + M++  I PD  TY+ +++G+ +     +A E FR+M      PD +T  
Sbjct: 182 FIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYM 241

Query: 238 ---------------------------------YGIMVDVLCKAGRVDEALGIVKSMDST 264
                                            Y +++  LCK G+  E   + + M   
Sbjct: 242 TLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQK 301

Query: 265 VCRPTSFIYSVLVH----------------------------TYGV-------ENRIEDA 289
            C+    IY+ L+                             TYGV         R+++A
Sbjct: 302 GCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEA 361

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           ++       NG+  +  +Y++LI    KA +     ++ ++M  KG  P+S   N +++ 
Sbjct: 362 MEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDA 421

Query: 350 LIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   G+TDEA   F+RM  + C+    TYT+MI    +  + E+A K+W  M  K   P+
Sbjct: 422 LAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPT 481

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              F  L  GLC  G V+ +C LL+++   G+ P    F  +  +L K GR
Sbjct: 482 AAAFRALSIGLCLSGKVARACKLLDELAPMGVIPE-TAFEDMLNVLCKAGR 531



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 171/381 (44%), Gaps = 7/381 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTF 154
           V  Y++MI+   ++ + Q  ++    M  + +    +    +I   YA     +  +  +
Sbjct: 202 VVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAE-GDFDLCLSLY 260

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
           + M + G+     A++ ++  LCK     +   +F+ M  +    +   Y+ L++   K 
Sbjct: 261 HEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKC 320

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N+  A  +F  M   G  PD+VTYG++V+ +CK+GR+DEA+  ++          + +Y
Sbjct: 321 GNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLY 380

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+   G   R+ +A   F EM K G   D   YNALI A  K  K        K M  
Sbjct: 381 SSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMED 440

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +G      T  I++NGL    + +EA +++  MI K     A  +  +    C  G++ +
Sbjct: 441 EGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVAR 500

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A K+   +     IP    F  ++N LC  G + ++C L +  +++G    G     L  
Sbjct: 501 ACKLLDELAPMGVIPET-AFEDMLNVLCKAGRIKEACKLADGFVDRGREIPGRVRTVLIN 559

Query: 453 LLIKEGREDV-LKFLQEKMNL 472
            L K G  D+ LK +  K+ +
Sbjct: 560 ALRKAGNADLALKLMHSKIGI 580



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 1/214 (0%)

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G V+E L + + M      P+ F Y+ L++       IE A      ME   I  DV  Y
Sbjct: 146 GMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTY 205

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N +I  +C+  K +  +   +DM  + VAP+  T   ++      G+ D    ++  M +
Sbjct: 206 NTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDE 265

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              E     Y+++I   C+ G+  + + V++ M  K    ++  ++ LI+     G + +
Sbjct: 266 NGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGE 325

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           + +L E M ++G+ P   T+G +   + K GR D
Sbjct: 326 AMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLD 359


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 195/432 (45%), Gaps = 56/432 (12%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
            A+ +     S +IV+ VL   R   T +  FF++  KQQN+  +V++Y  ++  L++ R
Sbjct: 23  NAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGR 82

Query: 112 QY--------------------QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
            Y                     ++WD +  +  +   +   F +I++ Y      + A+
Sbjct: 83  MYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNAL 142

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211
           Y F+ M K G   +L + N LL+ L K                    + +T++       
Sbjct: 143 YVFDNMGKCGRIPSLRSCNSLLNNLVK--------------------NGETHT------- 175

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A  ++++M+  G  PD+    IMV+  CK G+VDEA G VK M++    P   
Sbjct: 176 -------AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIV 228

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y  L++ Y     +E A      M + G+  +V  Y  LI  +CK  K     +VL+ M
Sbjct: 229 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM 288

Query: 332 NSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
             +  + P+ R   ++++G    G+ D+A R+   M++L  + +      +I  +C+ GE
Sbjct: 289 QEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGE 348

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           + +A  V   M      P  ++++ L++G C +G  S++  L + M+++GI P+  T+  
Sbjct: 349 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 408

Query: 450 LRKLLIKEGRED 461
           L K L + G  D
Sbjct: 409 LLKGLCRVGAFD 420



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 188/421 (44%), Gaps = 40/421 (9%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144
           W  K  +Y     +Y+++++   +       ++L + M  + +   V T+  +++   RV
Sbjct: 362 WNLKPDSY-----SYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 416

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTY 203
              ++A+  +++M K GV  +   ++ LL  L K +N   A  ++ D +   F     T+
Sbjct: 417 GAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITF 476

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           + ++ G  K   +  A EIF +M D GC+PD +TY  ++D  CKA  V +A  +  +M+ 
Sbjct: 477 NTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER 536

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P+  +Y+ L+       R+ +  D   EM   G+  ++  Y ALI  +CK      
Sbjct: 537 EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDK 596

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------CEADAD- 375
            +    +M   G++ N   C+ +++GL   G  DEA  + ++M+         C   +D 
Sbjct: 597 AFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDI 656

Query: 376 -------------------------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                                     Y + I   C+ G+++ A + +  + LK F+P   
Sbjct: 657 RYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNF 716

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T+  LI+G    G V ++  L ++M+ +G+ P+  T+  L   L K    D  + L  K+
Sbjct: 717 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 776

Query: 471 N 471
           +
Sbjct: 777 H 777



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 168/370 (45%), Gaps = 38/370 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  ++  Y  +  VE A      M + GV++N+  +  L+   CK   + +A+++ 
Sbjct: 226 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 285

Query: 190 DCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             M++    +PD + Y +L++G+ +   +  A  +  EM+  G   ++     +++  CK
Sbjct: 286 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 345

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G + EA G++  M     +P S+ Y+ L+  Y  E    +A +   +M + GI   V  
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 405

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPN---------------------------- 339
           YN L+   C+   F +  ++   M  +GVAP+                            
Sbjct: 406 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 465

Query: 340 ------SR-TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
                 SR T N +++GL   G+  EA  +F +M  L C  D  TY  +I  +C+   + 
Sbjct: 466 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 525

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +AFKV   M+ +   PS+  ++ LI+GL     + +   LL +M  +G+ P+  T+G L 
Sbjct: 526 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 585

Query: 452 KLLIKEGRED 461
               KEG  D
Sbjct: 586 DGWCKEGMLD 595



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 186/416 (44%), Gaps = 35/416 (8%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKVE 148
           Q+  E +V  Y+++++ L ++  +     + + M  + +   E  +  ++    +++  E
Sbjct: 396 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFE 455

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A   +  +   G T++   FN ++S LCK   + +A+EIFD MKD    PD  TY  L+
Sbjct: 456 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 515

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +G+ K  N+ +A ++   M     +P I  Y  ++  L K+ R+ E   ++  M      
Sbjct: 516 DGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLT 575

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y  L+  +  E  ++ A  ++ EM +NG+ A++ + + ++    +  +      +
Sbjct: 576 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 635

Query: 328 LKDMNSKG--------------------------------VAPNSRTCNIILNGLIGRGE 355
           ++ M   G                                + PN+   NI + GL   G+
Sbjct: 636 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 695

Query: 356 TDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            D+A R F  + +K    D  TY  +I  +   G +++AF++   M  +  +P++ T++ 
Sbjct: 696 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 755

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LINGLC    V  +  L   + +KG+ P+  T+  L     K G  D    L++KM
Sbjct: 756 LINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKM 811



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 179/378 (47%), Gaps = 13/378 (3%)

Query: 70  LEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR- 127
           +E F  A TL      W +   + +  S   +++MI  L K+ +     ++ + M+    
Sbjct: 451 MENFEGASTL------WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 504

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
             +  T+  ++  Y +   V +A      M++  ++ ++  +N L+S L KS+ + +  +
Sbjct: 505 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTD 564

Query: 188 IFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +   M  R   P+  TY  L++GW K+  L +A   + EM + G + +I+    MV  L 
Sbjct: 565 LLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY 624

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + GR+DEA  +++ M      P    +      Y    +I D++D   E  K  +L +  
Sbjct: 625 RLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD---ESCKTFLLPNNI 681

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +YN  I   CK  K  +  R    ++ KG  P++ T   +++G    G  DEA+R+   M
Sbjct: 682 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 741

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++     +  TY  +I   C+   +++A +++  +  K   P++ T++ LI+G C  G +
Sbjct: 742 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 801

Query: 426 SDSCVLLEDMIEKGIRPS 443
             +  L + MIE+GI PS
Sbjct: 802 DAAFKLKDKMIEEGISPS 819



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 143/332 (43%), Gaps = 54/332 (16%)

Query: 26  EPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIR-VSPEIVE--DVLEKFRNAGTLAF 81
           EP + +++   S+   +  S ++V +   L + GIR ++P IV    +++ +   G L  
Sbjct: 537 EPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDK 596

Query: 82  CFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMR 139
            F  + E  +N    ++    +M+  L ++ +      L+  M       + E F     
Sbjct: 597 AFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDI 656

Query: 140 KYARVQKV----EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +YA +QK+    +E+  TF       +  N   +N  ++ LCK+  V  A+  F  +  +
Sbjct: 657 RYAAIQKIADSLDESCKTF-------LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK 709

Query: 196 -FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            F+PD+ TY  L+ G+    N+  A  +  EM+  G  P+IVTY  +++ LCK+  VD A
Sbjct: 710 GFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRA 769

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             +                                   F ++ + G+  +V  YN LI  
Sbjct: 770 QRL-----------------------------------FHKLHQKGLFPNVVTYNTLIDG 794

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           +CK       +++   M  +G++P S  CN++
Sbjct: 795 YCKIGNMDAAFKLKDKMIEEGISP-SIQCNLL 825


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 176/361 (48%), Gaps = 4/361 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           Q    SV +Y ++I +  +  +Y+   +L++ M+ +++  ++ T+  ++   AR     E
Sbjct: 170 QGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWE 229

Query: 150 AVYT-FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILL 207
            +   F  M+  G+  ++  +N LLSA        +A+ +F  M D   +PD  TYS L+
Sbjct: 230 GLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           E +GK   L +  ++  EM   G  PDI +Y ++++   K+G + EA+G+   M +  C 
Sbjct: 290 ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCT 349

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  YSVL++ +G   R +D    FLEM+ +    D A YN LI  F +   FK V  +
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
             DM  + + P+  T   I+      G  ++A ++ + M        +  YT +I+ F Q
Sbjct: 410 FHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQ 469

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
               E+A   +  M      PS+ TF  L+      G+V +S  +L  +++ GI  + +T
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529

Query: 447 F 447
           F
Sbjct: 530 F 530



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 151/321 (47%), Gaps = 3/321 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N   + I++    R   +++ +  F+ M   GV++++ ++  L++A  ++     + E+ 
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           D MK+  I P   TY+ ++    +   +      +F EM   G  PDIVTY  ++     
Sbjct: 200 DRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAI 259

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G  DEA  + ++M+     P    YS LV T+G   R+E   D   EM   G L D+  
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN L+ A+ K+   K    V   M + G  PN+ T +++LN     G  D+  ++F  M 
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
               + DA TY ++I++F +GG  ++   ++  M  +   P M T+  +I      G+  
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 427 DSCVLLEDMIEKGIRPSGETF 447
           D+  +L+ M    I PS + +
Sbjct: 440 DARKILQYMTANDIVPSSKAY 460



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 170/356 (47%), Gaps = 3/356 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  ++E+  K+R+ + + DL+  M +   L ++ ++ +++  YA+   ++EA+  F+ MQ
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G T N   ++ LL+   +S      +++F  MK     PD+ TY+IL+E +G+     
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
               +F +MV+    PD+ TY  ++    K G  ++A  I++ M +    P+S  Y+ ++
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +G     E+A+  F  M + G    +  +++L+ +F +    K    +L  +   G+ 
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIP 524

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKV 396
            N  T N  +      G+ +EA + +  M K  C+ D  T   ++ ++     +++  + 
Sbjct: 525 RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQ 584

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           ++ MK    +PS+  + +++          D   LLE+M+   +    +  G++ K
Sbjct: 585 FEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 134/308 (43%), Gaps = 38/308 (12%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+   Y+I++   G++  L +  E+F EM   G +  + +Y  +++   + GR + +L +
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLEL 198

Query: 258 VKSMDSTVCRPTSFIYSVLVHT--------------------YGVENRI----------- 286
           +  M +    P+   Y+ +++                      G++  I           
Sbjct: 199 LDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258

Query: 287 -----EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                ++A   F  M   GI+ D+  Y+ L+  F K  + + V  +L +M S G  P+  
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDIT 318

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           + N++L      G   EA  VF +M    C  +A+TY++++ +F Q G  +   +++  M
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-R 459
           K     P   T+++LI    + G   +   L  DM+E+ I P  ET+  +     K G  
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 460 EDVLKFLQ 467
           ED  K LQ
Sbjct: 439 EDARKILQ 446



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 4/243 (1%)

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C P+   Y IM+ +L + G +D+ L +   M S     + F Y+ L++ YG   R E ++
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +    M+   I   +  YN +I A  +    ++ +  +  +M  +G+ P+  T N +L+ 
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSA 256

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              RG  DEA  VFR M       D  TY+ +++ F +   LEK   +   M     +P 
Sbjct: 257 CAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPD 316

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK--FL 466
           + +++VL+      G + ++  +   M   G  P+  T+  L  L  + GR D ++  FL
Sbjct: 317 ITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFL 376

Query: 467 QEK 469
           + K
Sbjct: 377 EMK 379



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 114/295 (38%), Gaps = 54/295 (18%)

Query: 90  QQNYEHSVRAYHSMI---------ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
           ++N E  +  Y  +I         E   KI QY    D+V + +         +  ++  
Sbjct: 415 EENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKA--------YTGVIEA 466

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200
           + +    EEA+  FN M + G   ++  F+ LL +  +   V++++ I   + D  IP +
Sbjct: 467 FGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRN 526

Query: 201 K-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           + T++  +E + +      A + + +M  + C+PD  T   ++ V   A  VDE     +
Sbjct: 527 RDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFE 586

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-------------------- 299
            M ++   P+   Y +++  YG   R +D  +   EM  N                    
Sbjct: 587 EMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDD 646

Query: 300 ----------------GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                           G    +  YNAL+ A     + +   RVL +   +G+ P
Sbjct: 647 SNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFP 701



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/125 (20%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           L+ L  RG       +F+  + L     + + ++ K F   G+ +++ +++KYM+ + + 
Sbjct: 83  LSSLPPRGSIARCLDIFKNKLSL-----NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWC 137

Query: 407 -PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            P+ H ++++I+ L  +G++     + ++M  +G+  S  ++  L     + GR +    
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197

Query: 466 LQEKM 470
           L ++M
Sbjct: 198 LLDRM 202


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 189/381 (49%), Gaps = 9/381 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           A ++++ +L + R +++ +     M  T   +N  +   ++  + +++K   A     +M
Sbjct: 74  AGNNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALM 133

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
            K G   N+  +N LL  LC++    KA  +   M+ +  +PD  +Y+ ++ G+ +   L
Sbjct: 134 LKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKEL 193

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A ++  EM  +GC+  +VT+GI++D  CKAG++DEA+G++K M          +Y+ L
Sbjct: 194 EKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSL 253

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +     ++     F E+ + G       YN LI  FCK  + K    + + M  +GV
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGV 313

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  T   +++GL G G+T EA ++   M+ K  E +  TY ++I   C+   +  A +
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALE 373

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRPSGETFGKLRKL 453
           + + MK +R  P   T++ L+ GLC KG + ++  LL  M++      P   +F  L   
Sbjct: 374 IVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHG 433

Query: 454 LIKEGR----EDVLKFLQEKM 470
           L K  R     D+   L EK+
Sbjct: 434 LCKGNRLHQALDIYDLLVEKL 454



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 189/389 (48%), Gaps = 9/389 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKV 147
           +Q +    V +Y+++I    + ++ +    L N M+      ++ T+ I++  + +  K+
Sbjct: 169 RQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKM 228

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSIL 206
           +EA+     M+  G+  +L  +  L+   C    + + + +FD + +R   P + TY+ L
Sbjct: 229 DEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTL 288

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K   L  A EIF  M++ G  P++ TY  ++D LC  G+  EAL ++  M     
Sbjct: 289 IRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDE 348

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF----K 322
            P    Y+++++    ++ + DA++    M+K     D   YN+L+G  C         K
Sbjct: 349 EPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASK 408

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
            +Y +LKD  S    P+  + N +++GL       +A  ++  ++ KL   D  T  +++
Sbjct: 409 LLYLMLKD--SSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILL 466

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G++ KA ++WK +   + +P+  T++ +I+G C  G+++ +  LL  M    + 
Sbjct: 467 NSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELP 526

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           PS   +  L   L K+G  D    L E+M
Sbjct: 527 PSVFDYNCLLSSLCKKGTLDQAWRLFEEM 555



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 178/390 (45%), Gaps = 9/390 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I    K+ + +   ++   M  + +  NV T+  ++     V K +EA+   N+M
Sbjct: 284 TYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
            +     N+  +N +++ LCK   V  A EI + MK R   PD+ TY+ LL G     +L
Sbjct: 344 LQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDL 403

Query: 217 PRAREIFREMV--DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
             A ++   M+   +  +PD++++  ++  LCK  R+ +AL I   +   +        +
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTN 463

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +L+++      +  A++ + ++  + I+ +   Y  +I  FCK         +L  M   
Sbjct: 464 ILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLS 523

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKA 393
            + P+    N +L+ L  +G  D+A+R+F  M +     D  ++ +MI    + G+++ A
Sbjct: 524 ELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSA 583

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   M      P + T+S LIN     G + ++    + MI+ G  P       + K 
Sbjct: 584 ESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKY 643

Query: 454 LIKEGREDVL----KFLQEKMNLLVKEPLC 479
            I +G  D L    K L +K  +L KE  C
Sbjct: 644 CISQGETDKLTEFVKKLVDKDVVLDKELTC 673



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 148/305 (48%), Gaps = 5/305 (1%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTY 203
           +++ AV  F      G + + A  N L++ L +S+N   A   +  M   D FI +  + 
Sbjct: 53  QLKNAVSVFQQAVDSGGSLSFAG-NNLMATLVRSRNHEVAFSFYRKMLETDTFI-NFVSL 110

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           S LLE + +      A  +   M+  G   ++  Y I++  LC+     +A+ +++ M  
Sbjct: 111 SGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQ 170

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               P    Y+ ++  +     +E A+    EM+ +G    +  +  LI AFCKA K   
Sbjct: 171 NSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-ADTYTMMIK 382
              +LK+M  KG+  +      ++ G    GE D    +F  +++  ++  A TY  +I+
Sbjct: 231 AMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC+ G L++A +++++M  +   P+++T++ LI+GLC  G   ++  LL  M++K   P
Sbjct: 291 GFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEP 350

Query: 443 SGETF 447
           +  T+
Sbjct: 351 NVVTY 355



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKV 147
           Q++ E +V  Y+ +I  L K        ++V  M+ +R    N+ T+  ++        +
Sbjct: 345 QKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNI-TYNSLLGGLCAKGDL 403

Query: 148 EEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYS 204
           +EA     +M K       ++ +FN L+  LCK   + +A +I+D + ++    D  T +
Sbjct: 404 DEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTN 463

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           ILL    K  ++ +A E+++++ ++   P+  TY  M+D  CK G ++ A G++  M  +
Sbjct: 464 ILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLS 523

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P+ F Y+ L+ +   +  ++ A   F EM+++    DV  +N +I    KA   K+ 
Sbjct: 524 ELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSA 583

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKM 383
             +L  M+  G++P+  T + ++N  +  G  DEA   F +MI    E DA     ++K 
Sbjct: 584 ESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKY 643

Query: 384 FCQGGELEK 392
               GE +K
Sbjct: 644 CISQGETDK 652



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 6/262 (2%)

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +P L  A  +F++ VD+G +       +M   L ++   + A    + M  T        
Sbjct: 51  NPQLKNAVSVFQQAVDSGGSLSFAGNNLMA-TLVRSRNHEVAFSFYRKMLETDTFINFVS 109

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
            S L+  +    +   A      M K G   +V  YN L+   C+  +F     +L++M 
Sbjct: 110 LSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMR 169

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
              + P+  + N ++ G     E ++A ++   M    C     T+ ++I  FC+ G+++
Sbjct: 170 QNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMD 229

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A  + K MK K     +  ++ LI G CD G +     L ++++E+G  P   T+  L 
Sbjct: 230 EAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLI 289

Query: 452 KLLIKEGR----EDVLKFLQEK 469
           +   K GR     ++ +F+ E+
Sbjct: 290 RGFCKLGRLKEASEIFEFMMER 311


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 188/405 (46%), Gaps = 42/405 (10%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFC 135
           GT AF   +     + Y  S+ A +S++  L KI   ++ W++    +R+   LNV T  
Sbjct: 67  GTEAFRILR----SKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLN 122

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           I++    +  K ++     + M+  G+  ++  +N L+ A C+   + +A EI + M D+
Sbjct: 123 IMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADK 182

Query: 196 FI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY---------------- 238
            + P   TY+ ++ G  K     RA+ I  EM++ G +PD  TY                
Sbjct: 183 GLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEA 242

Query: 239 ----------GIMVD---------VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
                     G++ D         V  +   +D+AL   + M      P + IY+VL+H 
Sbjct: 243 KEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHG 302

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y     + +A+    EM + G + DV  YN ++   CK     +  ++  +M  +G  P+
Sbjct: 303 YCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPD 362

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T   +++G    G   +A  +F  M +   + D   Y  +I  FC+ GE+EKA ++W 
Sbjct: 363 FYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWD 422

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            M  ++  P+  T+ +LIN  C  G VS++  L + MIEKGI+P+
Sbjct: 423 GMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPT 467



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 185/396 (46%), Gaps = 44/396 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           S+  Y+++I  L K  +Y     I+ +++N   +    +  T+  ++ +  R     EA 
Sbjct: 187 SLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSP---DTTTYNTLLVESCRRDNFSEAK 243

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW 210
             F  M + GV  +L +F+ L++   +++++ +A   F D  K   +PD+  Y++L+ G+
Sbjct: 244 EIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 303

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++ N+  A +I  EM++ GC  D++ Y  +++ LCK   + +A  +   M      P  
Sbjct: 304 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 363

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK---------- 320
           + ++ L+H +  +  +  A+  F  M +  I  D+  YN LI  FCK  +          
Sbjct: 364 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDG 423

Query: 321 ------FKN-------------------VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
                 F N                    +R+   M  KG+ P   TCN ++ G    G+
Sbjct: 424 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 483

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           + +A     RMI K    D  +Y  +I  F +   ++KAF     M+ +  +P + T++V
Sbjct: 484 SSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNV 543

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           ++NG C +G + ++ ++L  MIEKGI P   T+  L
Sbjct: 544 VMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTAL 579



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 156/311 (50%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + ++M  Y R   + EA+   + M + G   ++ A+N +L+ LCK K +  A ++FD M 
Sbjct: 296 YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMV 355

Query: 194 DR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R  +PD  T++ L+ G  +D N+ +A  +F  M      PDIV Y  ++D  CK G ++
Sbjct: 356 ERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEME 415

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M S    P    Y +L++ Y     + +A   +  M + GI   +   N +I
Sbjct: 416 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +C++         L  M +KGVAP+  + N ++NG +     D+A+    +M K    
Sbjct: 476 KGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLL 535

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY +++  FC+ G +++A  V + M  K   P   T++ LING   +  ++++   
Sbjct: 536 PDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRF 595

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 596 HDEMLQRGFAP 606



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 138/283 (48%), Gaps = 2/283 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY++++  L K +       L + M  +  L +  TF  ++  + +   + +A+  F 
Sbjct: 328 VIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFG 387

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M +  +  ++ A+N L+   CK   + KA E++D M  R I P+  TY IL+  +    
Sbjct: 388 TMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVG 447

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A  ++  M++ G  P +VT   ++   C++G   +A   +  M +    P    Y+
Sbjct: 448 HVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYN 507

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ +  E+ ++ A     +MEK G+L D+  YN ++  FC+  + +    VL+ M  K
Sbjct: 508 TLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEK 567

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
           G+ P+  T   ++NG + +   +EA+R    M++   A  D +
Sbjct: 568 GINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDVF 610



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R++R+ + +   + M + + V +VE      + M     T NL  F+ L+    +++ +
Sbjct: 6   VRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLV-FDLLIRTYVQARKL 64

Query: 183 RKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
           R+  E F  ++ + ++      + LL G  K   +  A E+ RE+V +G   ++ T  IM
Sbjct: 65  REGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIM 124

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+ LCK G+ D+    +  M+          Y+ L+  Y  E  +E+A +    M   G+
Sbjct: 125 VNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGL 184

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
              +  YNA+I   CK  ++     +L +M + G++P++ T N +L     R    EA  
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 244

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +F  M++     D  +++ +I +F +   L++A   ++ MK    +P    ++VL++G C
Sbjct: 245 IFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 421 DKGIVSDSCVLLEDMIEKG 439
             G + ++  + ++M+E+G
Sbjct: 305 RNGNMLEALKIRDEMLEQG 323



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 19/203 (9%)

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC------------------K 317
           +VH +    R+ DA    L M +   ++ V +  AL+ + C                  +
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQ 60

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
           A K +      + + SKG   +   CN +L GL+     + A+ V R +++   E +  T
Sbjct: 61  ARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYT 120

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
             +M+   C+ G+ +        M+       M T++ LI   C +G++ ++  ++  M 
Sbjct: 121 LNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMA 180

Query: 437 EKGIRPSGETFGKLRKLLIKEGR 459
           +KG++PS  T+  +   L K+GR
Sbjct: 181 DKGLKPSLFTYNAIINGLCKKGR 203


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 181/385 (47%), Gaps = 25/385 (6%)

Query: 60  RVSPEI--VEDVLE------KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           RVSP+I     V+       + R AG +A     W         SV  Y+S+I+   K  
Sbjct: 186 RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG-----LAPSVATYNSLIDGYCKKG 240

Query: 112 QYQIMWDLVNAMRTKRMLNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
               M+ +   M  K M+         TF +++  Y +      AV  F  M++ G+  +
Sbjct: 241 GAGNMYHV--DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS 298

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +N L+S LC    V +  ++ + M+D  + P+  T+  +L+G+ K   +  A +   
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M +    PD+V Y I++DV  + G++++A+ + ++M      P    Y+ L+  +    
Sbjct: 359 GMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
               A     EM++ GI ADV  YN LIGA C   + +   ++L +M+  G+ PN  T N
Sbjct: 419 DWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYN 478

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKL 402
            I+ G   +G    AY +  RM K C   A+  TY + IK FCQ G++++A  +   M  
Sbjct: 479 TIIQGFCDKGNIKSAYEIRTRMEK-CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSD 427
           K  +P+  T+  +  G+ +KG   D
Sbjct: 538 KCLVPNGITYETIKEGMMEKGYTPD 562



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYT-- 153
           +  ++++I  L +I Q +   D+   ++   +  +V T+  ++  Y +        +   
Sbjct: 191 IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDM 250

Query: 154 -FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWG 211
               M + G++     F  L++  CK+ N   A  +F+ MK + I  S  TY+ L+ G  
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            +  +    ++  EM D G +P+ +T+G ++   CK G + +A   +  M      P   
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           IY++L+  Y    ++EDA+     M K GI  +V  YN LI  F ++  +++   +L +M
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
             KG+  +  T N+++  L  +GE  +A ++   M ++  E +  TY  +I+ FC  G +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + A+++   M+  R   ++ T++V I   C  G + ++  LL +M++K + P+G T+  +
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550

Query: 451 RKLLIKEG 458
           ++ ++++G
Sbjct: 551 KEGMMEKG 558



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 162/347 (46%), Gaps = 6/347 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKY 141
           F    E    +  S  + ++++  L   ++  +      +A+R +   ++ TF  ++   
Sbjct: 142 FLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGL 201

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK---SKNVRKAQEIFDCMKDRFI- 197
            R+ ++ +A      ++ +G+  ++A +N L+   CK   + N+     +   M +  I 
Sbjct: 202 CRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGIS 261

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P + T+ +L+ G+ K+ N   A  +F EM   G    +VTY  ++  LC  G+V+E + +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M+     P    +  ++  +  +  + DA D    M +  +  DV +YN LI  + +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             K ++   V + M  KG++PN  T N ++ G    G+   A  +   M  K  EAD  T
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           Y ++I   C  GE+ KA K+   M      P+  T++ +I G CDKG
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKG 488



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 43/340 (12%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           L+ AL ++    +A + F    +   R  P + + + LL G      +  A + FR  + 
Sbjct: 125 LVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALR 184

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVK---------------SMDSTVCR------ 267
              +PDI T+  ++  LC+ G++ +A  + K               S+    C+      
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 268 -----------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
                            PT+  + VL++ Y   +    AV  F EM++ GI A V  YN+
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI   C   K +   +++++M   G++PN  T   +L G   +G   +A      M  + 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            E D   Y ++I ++ + G++E A  V + M  K   P++ T++ LI G    G    + 
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            LL++M EKGI     T+  L   L  +G     +K L E
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 267 RP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           RP TS + ++L    G + R++ A   F    +  +  D+  +N +I   C+  + +   
Sbjct: 153 RPSTSSVNALLAGLVGAK-RVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
            V KD+ + G+AP+  T N +++G   +G     Y V                M++K   
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV---------------DMLLKEMV 256

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G                  P+  TF VLING C     + +  + E+M ++GI  S  
Sbjct: 257 EAG----------------ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVV 300

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
           T+  L   L  EG+ E+ +K ++E  +L
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDL 328


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 215/481 (44%), Gaps = 59/481 (12%)

Query: 7   SRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIV 66
           SR K  S   S L  + SS+    +L A    S   +  PK +LDT+L    I   P + 
Sbjct: 101 SRRK-FSDAKSLLLNFISSDHPHHSLHAHLLRSDHTI--PKPLLDTSLAAYVISKQPHLG 157

Query: 67  EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ-YQIMWD---LVNA 122
             +  K                K+  +  ++   ++++ +L +    + +++      +A
Sbjct: 158 HQIFNKM---------------KRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDA 202

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           ++     NV TF I++  Y      EEA+   N M +YG   +   +N +L+ALCK   +
Sbjct: 203 VKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQL 262

Query: 183 RKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            + +++   MK+    P+  TY+IL+ G+ K   L  A E+   M   G  PD+ TY  M
Sbjct: 263 TQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTM 322

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV------------------------ 277
           V  LC  G++DEA+ +   M+S    P    Y+ L+                        
Sbjct: 323 VRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382

Query: 278 ------HT-----YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
                 H      +  E +I++A +  ++M ++G   D   YN +I  +CKA K    Y+
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFC 385
           ++ +M  KG+  ++ T N +L+ +    + D+AY +  +  K     D  TY  +I  + 
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYF 502

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  + ++A K+W+ MK    + ++ T++ +I GLC  G    +   L +++EKG+ P   
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDES 562

Query: 446 T 446
           T
Sbjct: 563 T 563



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 155/313 (49%), Gaps = 5/313 (1%)

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRK---AQEIF-DCMKDRFIPDSKTYSILLEG 209
           FN M++     NL   N LL+AL +S +      ++E+F D +K    P+  T++IL+ G
Sbjct: 161 FNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHG 220

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           +  D N   A  +  +M + GC PD VTY  ++  LCK  ++ +   ++  M ++   P 
Sbjct: 221 YCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPN 280

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y++LVH Y     +++A +    M   G+L DV  YN ++   C   K     R+  
Sbjct: 281 RNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRD 340

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGG 388
            M S  + P+  T N +++G      +D A+++   M  +  + +  T+ +MIK FC  G
Sbjct: 341 KMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEG 400

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++++A  V   M    F P   T++ +ING C  G ++++  ++++M  KG++    T  
Sbjct: 401 KIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLN 460

Query: 449 KLRKLLIKEGRED 461
            L   +  E + D
Sbjct: 461 TLLHTMCLEKQLD 473



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 204/455 (44%), Gaps = 19/455 (4%)

Query: 18  FLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
            +  Y S   + EAL     + +       V  +T L     R     V D+L + +N+G
Sbjct: 217 LIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSG 276

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCI 136
                             +   Y+ ++    K++  +   +++  M  K ML +V T+  
Sbjct: 277 LFP---------------NRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNT 321

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++R      K++EAV   + M+ + +  ++  +N L+    + +    A ++ + MK R 
Sbjct: 322 MVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARG 381

Query: 197 IPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + ++  T++I+++ +  +  +  A  +  +MV++G +PD  TY  M++  CKAG++ EA 
Sbjct: 382 VKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAY 441

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M     +  +F  + L+HT  +E +++DA    ++  K G + D   Y  LI  +
Sbjct: 442 KMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGY 501

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
            K  +     ++ ++M   G+     T N I+ GL   G+TD+A      ++ K    D 
Sbjct: 502 FKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDE 561

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            T  ++I  +C  G +EKAF+    M      P + T ++L+ GLC +G++     L   
Sbjct: 562 STSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNT 621

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            I KG      T+  +     KE R ED    + E
Sbjct: 622 WISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTE 656



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 41/311 (13%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y +  K+ EA    + M + G+  +    N LL  +C  K +  A  +   M
Sbjct: 423 TYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTL--TM 480

Query: 193 KDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           K R   +I D  TY  L+ G+ KD    RA +++ EM +TG    I+TY  ++  LC +G
Sbjct: 481 KARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSG 540

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           + D+A                                   VD   E+ + G++ D +  N
Sbjct: 541 KTDQA-----------------------------------VDKLNELLEKGLVPDESTSN 565

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
            +I  +C     +  ++    M    + P+  TCNI+L GL   G  ++   +F   I K
Sbjct: 566 IIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISK 625

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               D  TY ++I  FC+   LE AF +   M+ K   P  +T++ ++ GL   G   ++
Sbjct: 626 GKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEA 685

Query: 429 CVLLEDMIEKG 439
             L     EKG
Sbjct: 686 EKLALKFAEKG 696



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 48/309 (15%)

Query: 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGW---GKDPNLPRAREIFREMVD 228
           L+A   SK      +IF+ MK  RF P+  T + LL          +L  +RE+F++ V 
Sbjct: 145 LAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVK 204

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G  P++ T+ I                                   L+H Y  +N  E+
Sbjct: 205 LGVQPNVNTFNI-----------------------------------LIHGYCSDNNTEE 229

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+    +M + G   D   YN ++ A CK ++   V  +L  M + G+ PN  T NI+++
Sbjct: 230 ALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVH 289

Query: 349 GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           G        EA  V   M  K    D  TY  M++  C  G++++A ++   M+  + +P
Sbjct: 290 GYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVP 349

Query: 408 SMHTFSVLINGLCDKGIVSDSCV-LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
            + T++ LI+G C +   SD+   L+E+M  +G++ +G T   + K    EG+ D     
Sbjct: 350 DVVTYNTLIDG-CFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKID----- 403

Query: 467 QEKMNLLVK 475
            E  N++VK
Sbjct: 404 -EASNVMVK 411



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 133/313 (42%), Gaps = 49/313 (15%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-Q 186
           +L+  T+  ++  Y + ++ + A+  +  M++ G+   +  +N ++  LC S    +A  
Sbjct: 488 ILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVD 547

Query: 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           ++ + ++   +PD  T +I++ G+  +  + +A +   +MV+    PDI T  I++  LC
Sbjct: 548 KLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLC 607

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + G +++ L +  +  S      +  Y++++ ++  E R+EDA D   EME   +  D  
Sbjct: 608 REGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRY 667

Query: 307 MYNAL----------------------------------------------IGAFCKANK 320
            YNA+                                              I + C   K
Sbjct: 668 TYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGK 727

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380
           +K+  ++ +    KGV+ N  T   +++GL+ R ++     +   M+       D   M 
Sbjct: 728 YKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNPMR 787

Query: 381 IK--MFCQGGELE 391
               ++C G ELE
Sbjct: 788 YAHILWCFGFELE 800


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 169/334 (50%), Gaps = 3/334 (0%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-F 196
           + K  R  ++EE       M   G   ++     L+   CK    RKA  I + ++D   
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +PD  TY++L+ G         A ++  +MV  GC+P +VT+ I+++ LC+ G +  A+ 
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++ M    C P S  Y+ L+H +  E ++E A++   +M   G   D+  YN L+ A C
Sbjct: 211 VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALC 270

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
           K  K      +L  ++SKG +P   T N +++GL   G+TD+A ++   M  K  + D  
Sbjct: 271 KDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDII 330

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+ ++    + G++++A K +  +++    P+  T++ ++ GLC       +   L  M
Sbjct: 331 TYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYM 390

Query: 436 IEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
           +++G +P+  ++  L + L  EG  ++ L+ L E
Sbjct: 391 VQRGCKPTEASYTILIEGLAYEGLAKEALELLNE 424



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 1/238 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V TF I++    R   +  A+     M K+G T N  ++N LL   CK K + +A E  
Sbjct: 188 SVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYL 247

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M  R   PD  TY+ LL    KD  +  A E+  ++   GC+P ++TY  ++D L K 
Sbjct: 248 GKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKV 307

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+ D+A  ++  M +   +P    YS LV     E ++++A+  F ++E  G+  +   Y
Sbjct: 308 GKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITY 367

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           NA++   CKA K       L  M  +G  P   +  I++ GL   G   EA  +   +
Sbjct: 368 NAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 1/227 (0%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           L + G ++E    ++SM      P     + L+  +    +   A      +E +G + D
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V  YN LI   C   ++ +  ++L DM  +G +P+  T NI++N L  +G    A  V  
Sbjct: 154 VITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLE 213

Query: 365 RMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           +M K  C  ++ +Y  ++  FC+  ++E+A +    M  +   P + T++ L+  LC  G
Sbjct: 214 KMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDG 273

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            V  +  LL  +  KG  P   T+  +   L K G+ D    L ++M
Sbjct: 274 KVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 1/212 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  ++  ++  + + +K+E A+     M   G   ++  +N LL+ALCK   V  A E+ 
Sbjct: 223 NSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELL 282

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + +  +   P   TY+ +++G  K     +A ++  EM   G  PDI+TY  +V  L + 
Sbjct: 283 NQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSRE 342

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+VDEA+     ++    +P +  Y+ ++       + + A+D    M + G     A Y
Sbjct: 343 GKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASY 402

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             LI         K    +L ++  +GV   S
Sbjct: 403 TILIEGLAYEGLAKEALELLNELCLRGVVKKS 434


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 180/384 (46%), Gaps = 20/384 (5%)

Query: 107 LAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           L  I +++  ++++  M +K  + +  T+  ++       KVE+A   F  M++ G+  +
Sbjct: 197 LCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPD 256

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +  L+ + CK+  + +A+  FD M +D   P+  TY+ L+  + K   + +A E++ 
Sbjct: 257 VYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYE 316

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-----------------DSTVCR 267
            M+  GC P+IVTY  ++D LCKAG++++A  I K M                 D     
Sbjct: 317 MMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNE 376

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F Y  LV       ++++A D    M   G   +  +Y+ALI   CKA K      V
Sbjct: 377 PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
              M   G  PN  T + +++ L      D A +V  +M++  C  +   YT MI   C+
Sbjct: 437 FTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCK 496

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+ ++A+K+   M+ K   P++ T++ +I+G    G V     LL+ M  KG  P+  T
Sbjct: 497 VGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVT 556

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           +  L       G  D    L E+M
Sbjct: 557 YRVLINHCCSTGLLDEAHKLLEEM 580



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 183/408 (44%), Gaps = 32/408 (7%)

Query: 85  KWAE-----KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           KW E     +++ +      Y  MI  L +   ++   D +  MR    L NV T+ I++
Sbjct: 25  KWREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILL 84

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI 197
                 +K+       ++M   G   +   FN L+ A C+S +   A ++   M +    
Sbjct: 85  CGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQ 144

Query: 198 PDSKTYSILLEGW------GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           P    Y+IL+ G       GKD  L  A + + EM++ G   + V        LC  G+ 
Sbjct: 145 PGYVVYNILIGGICSSEEPGKDV-LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKF 203

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           ++A  +++ M S    P +  YS ++      +++E A   F EM++NGI  DV +Y  L
Sbjct: 204 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTL 263

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I +FCKA   +       +M   G APN  T   +++  +   +  +A  V+  M+ K C
Sbjct: 264 IDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGC 323

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-----------RFI------PSMHTFS 413
             +  TYT +I   C+ G++EKA +++K MK +           R +      P++ T+ 
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYG 383

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            L++GLC    V ++  LL+ M  +G  P+   +  L     K G+ D
Sbjct: 384 ALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLD 431



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 188/473 (39%), Gaps = 99/473 (20%)

Query: 89  KQQNYEHSVRAYHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           K+      V  Y ++I+S  K   I Q +  +D +   R     NV T+  ++  Y + +
Sbjct: 249 KRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEME--RDGCAPNVVTYTALIHAYLKSR 306

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-------- 197
           KV +A   + +M   G T N+  +  L+  LCK+  + KA +I+  MK   +        
Sbjct: 307 KVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMH 366

Query: 198 ----------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
                     P+  TY  L++G  K   +  AR++ + M   GC P+ V Y  ++D  CK
Sbjct: 367 FRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCK 426

Query: 248 AGRVDEA-----------------------------------LGIVKSMDSTVCRPTSFI 272
           AG++DEA                                   L ++  M    C P   I
Sbjct: 427 AGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVI 486

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ ++       + ++A    + ME+ G   +V  Y A+I  F K+ + +    +L+ M+
Sbjct: 487 YTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMS 546

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-------------------------- 366
           SKG APN  T  +++N     G  DEA+++   M                          
Sbjct: 547 SKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIAS 606

Query: 367 ----IKLCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP----SMHTFSV 414
                ++ E D    A  Y ++I  F + G LE A ++ +  +L  F P    + +    
Sbjct: 607 LYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNE--ELSSFSPFSAANQNIHIT 664

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
           LI  L        +  L  DMI +G  P       L K L++  R E+ L+ L
Sbjct: 665 LIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLL 717



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 8/288 (2%)

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           +LCKS   R+A  + +  K+ F+PD+  Y+ ++ G  +      A +    M  + C P+
Sbjct: 19  SLCKSGKWREALSLLE--KEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPN 76

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++TY I++       ++     I+  M +  C P+  I++ LVH Y        A     
Sbjct: 77  VLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLK 136

Query: 295 EMEKNGILADVAMYNALIGAFCKANK-FKNVY----RVLKDMNSKGVAPNSRTCNIILNG 349
           +M + G      +YN LIG  C + +  K+V     +   +M   GV  N    +     
Sbjct: 137 KMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRC 196

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L G G+ ++AY V R M+ K    D  TY+ +I   C   ++EKAF++++ MK     P 
Sbjct: 197 LCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPD 256

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ ++ LI+  C  G +  +    ++M   G  P+  T+  L    +K
Sbjct: 257 VYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLK 304



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 44/274 (16%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M   G   D  T G     LCK+G+  EAL +++  +     P + +Y+ ++      + 
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEEFV---PDTVLYTKMISGLCEASL 57

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            E+A+D    M  +  L +V  Y  L+       K     R+L  M ++G  P+ R  N 
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG----------------- 387
           +++     G+   AY++ ++M++  C+     Y ++I   C                   
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGE 177

Query: 388 -----------------------GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
                                  G+ EKA+ V + M  K FIP   T+S +I  LC+   
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK 237

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           V  +  L ++M   GI P    +  L     K G
Sbjct: 238 VEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG 271


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 186/407 (45%), Gaps = 36/407 (8%)

Query: 98  RAYHSMIE---------------SLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKY 141
           RAY+ M+E                L  I +++  ++++  M +K  + +  T+  ++   
Sbjct: 73  RAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYL 132

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDS 200
               KVE+A   F  M++ G+T ++  +  LL   CK   + +A+  FD M+ D   P+ 
Sbjct: 133 CNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNV 192

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+ L+  + K   L RA EIF  M+  GC P+IVTY  ++D  CKAG  ++A  I   
Sbjct: 193 VTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYAR 252

Query: 261 M-----------------DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
           M                 DS +  P    Y  LV      +++++A D    M   G   
Sbjct: 253 MKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEP 312

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +  +Y+ALI  FCK  K      V   M   G +PN  T + +++ L      D A +V 
Sbjct: 313 NQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVL 372

Query: 364 RRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
            +M++  C  +   YT M+   C+ G+ ++A+++   M+ K   P++ T++ +I+G    
Sbjct: 373 TKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKA 432

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
           G V     LL+ M  KG  P+  T+  L       G  +D  K L+E
Sbjct: 433 GRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEE 479



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 205/468 (43%), Gaps = 58/468 (12%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQ 112
           + ++GI         +L++F   G +      + E QQ+    +V  Y ++I +  K R+
Sbjct: 148 MKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRK 207

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV--------- 162
                ++   M +   + N+ T+  ++  + +  + E+A   +  M+   V         
Sbjct: 208 LSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYF 267

Query: 163 --------TQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
                     N+  +  L+  LCK+  V++A+++ + M  +   P+   Y  L++G+ K 
Sbjct: 268 RIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKV 327

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A+E+F +M+  GC+P++ TY  ++D L K  R+D AL ++  M    C P   IY
Sbjct: 328 GKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIY 387

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + +V       + ++A    L ME+ G   +V  Y A+I  F KA +      +L+ M S
Sbjct: 388 TEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTS 447

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRV---------------FRRMIK---------- 368
           KG APN  T  +++N     G  D+A+++               +R++I+          
Sbjct: 448 KGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASL 507

Query: 369 --LCEADAD-------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLING 418
             L E   D        Y ++I  F + G LE A ++ +  +L  F  +  +T+  LI  
Sbjct: 508 GLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHE--ELSSFSAAYQNTYVSLIES 565

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKF 465
           L     V  +  L  DM  +G  P       L K L++ G+ E+ L+ 
Sbjct: 566 LTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQL 613



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 139/320 (43%), Gaps = 29/320 (9%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR------ARE 221
           FN L+ A C+S +   A ++   M    + P    Y+IL+ G     +LP       A  
Sbjct: 14  FNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAER 73

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
            + EM++ G   + V        LC  G+ ++A  +++ M S    P S  YS ++    
Sbjct: 74  AYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLC 133

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +++E A   F EM++NGI  DV  Y  L+  FCK    +       +M   G APN  
Sbjct: 134 NASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVV 193

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T   +++  +   +   A  +F  M+   C  +  TYT +I   C+ GE EKA +++  M
Sbjct: 194 TYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARM 253

Query: 401 K-------------------LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           K                   LK   P++ T+  L++GLC    V ++  LLE M  +G  
Sbjct: 254 KNDKVDIPDVDIYFRIVDSELKE--PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCE 311

Query: 442 PSGETFGKLRKLLIKEGRED 461
           P+   +  L     K G+ D
Sbjct: 312 PNQIIYDALIDGFCKVGKLD 331



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 13/235 (5%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV-------- 277
           M+  GC P  + +  +V   C++G    A  ++K M     +P   +Y++L+        
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 278 -HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
             +  V    E A +  LEM   G++ +           C   KF+  Y V+++M SKG 
Sbjct: 62  LPSMEVIGLAERAYNEMLEM---GVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGF 118

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
            P+S T + ++  L    + ++A+++F+ M +     D  TYT ++  FC+ G +E+A  
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +  M+     P++ T++ LI+       +S +  + E M+  G  P+  T+  L
Sbjct: 179 WFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTAL 233



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 42/203 (20%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR-- 353
           M   G      ++N+L+ A+C++  +   Y++LK M   G  P     NI++ G+     
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 354 ---------------------------------------GETDEAYRVFRRMI-KLCEAD 373
                                                  G+ ++AY V R M+ K    D
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
           + TY+ +I   C   ++EKAF++++ MK     P ++T++ L++  C  G++  +    +
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 434 DMIEKGIRPSGETFGKLRKLLIK 456
           +M + G  P+  T+  L    +K
Sbjct: 182 EMQQDGCAPNVVTYTALIHAYLK 204


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 204/417 (48%), Gaps = 10/417 (2%)

Query: 54  LDQSGIR---VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           +++ GI    V+  IV     KF NA   A C+FK A K+++   +   Y ++I +  + 
Sbjct: 355 MNEEGIEMSLVTYSIVVGGFAKFGNA-EAADCWFKKA-KERHTNLNAYIYGNIIYAYCQA 412

Query: 111 RQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
                   LV  M  + +   ++ +  +M  Y  ++  E+ +  F  +++ G   ++  +
Sbjct: 413 CNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITY 472

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVD 228
             L++   K   V KA E+   MK   I  + KTYS+L+ G+ K  +   A  +F +++ 
Sbjct: 473 GCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIK 532

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G  PD+V Y  ++   C  G +D A+ +VK M    CRPTS  +  ++H +     +  
Sbjct: 533 DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRR 592

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A++ F  M ++G +  V  +NAL+    +  K +    +L +M   GV+P+  T   I++
Sbjct: 593 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMH 652

Query: 349 GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           G    G+T +A+  F +M  +  + D  TY  ++K  C+ G ++ A  V + M  ++   
Sbjct: 653 GYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPR 712

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           +   +++LI+G   +G + ++  L++ M ++G++P   T+        K G  D+L+
Sbjct: 713 NTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAG--DMLR 767



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 179/357 (50%), Gaps = 3/357 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K+  +  SV  Y  +I    KI +     ++   M++  +  N++T+ +++  + +++  
Sbjct: 461 KECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDW 520

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
             A   F  + K G+  ++  +N ++ A C   N+ +A  +   M K+R  P S+T+  +
Sbjct: 521 TNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPI 580

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ +   + RA EIF  M  +GC P + T+  +V  L +  ++++A+ I+  M     
Sbjct: 581 IHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGV 640

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ ++H Y        A + F +M   G+  DV  Y AL+ A CK+ + ++   
Sbjct: 641 SPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALA 700

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           V ++MN++ +  N+   NI+++G   RG+  EA  + ++M +   + D  TYT  I   C
Sbjct: 701 VTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACC 760

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           + G++ +A K  + M+     P++ T++ LI+G  +  +   +    E++   G++P
Sbjct: 761 KAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKP 817



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 110 IRQYQIMWDLVNAMRTKRMLNVE-------TFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           I  Y +  D+  A+   R +N E       T+ I++  +A+    E A   F   ++   
Sbjct: 336 IHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHT 395

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRARE 221
             N   +  ++ A C++ N+ +A+ +   M++  I      Y  +++G+    N  +   
Sbjct: 396 NLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLI 455

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +F+ + + G  P ++TYG ++++  K G+V +AL + K M S   +     YS+L++ + 
Sbjct: 456 VFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFL 515

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                 +A   F ++ K+G+  DV +YN +I AFC          ++K+M  +   P SR
Sbjct: 516 KLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSR 575

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T   I++G    GE   A  +F  M +  C     T+  ++    +  ++EKA ++   M
Sbjct: 576 TFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEM 635

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
            L    P  HT++ +++G    G    +      M  +G++    T+  L K   K GR 
Sbjct: 636 ALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRM 695

Query: 461 DVLKFLQEKMN 471
                +  +MN
Sbjct: 696 QSALAVTREMN 706



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 176/387 (45%), Gaps = 11/387 (2%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144
           KW E++   E S +A+  ++++     Q +    +V+A    +  +   F +++  YAR 
Sbjct: 256 KWHEER---EGSTKAFRKVLDT-----QPENWQAVVSAFERIKKPSRREFGLMVGYYARR 307

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTY 203
             +  A  TF  M+  G+  +   +  L+ A    +++ +A      M +  I  S  TY
Sbjct: 308 GDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTY 367

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           SI++ G+ K  N   A   F++  +   N +   YG ++   C+A  +D A  +V+ M+ 
Sbjct: 368 SIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEE 427

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
                   IY  ++  Y +    E  +  F  +++ G    V  Y  LI  + K  K   
Sbjct: 428 EGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSK 487

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIK 382
              V K M S G+  N +T ++++NG +   +   A+ VF  +IK   + D   Y  +IK
Sbjct: 488 ALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIK 547

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC  G +++A  + K M+ +R  P+  TF  +I+G    G +  +  + + M   G  P
Sbjct: 548 AFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIP 607

Query: 443 SGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  TF  L   L+++ + E  ++ L E
Sbjct: 608 TVHTFNALVLGLVEKRKMEKAVEILDE 634



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           +V  +++++  L + R+ +   ++++ M    +   E T+  IM  YA +    +A   F
Sbjct: 608 TVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYF 667

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
             M+  G+  ++  +  LL A CKS  ++ A  +   M  + IP ++  Y+IL++GW + 
Sbjct: 668 TKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARR 727

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            ++  A ++ ++M   G  PDI TY   ++  CKAG +  A   ++ M++   +P    Y
Sbjct: 728 GDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTY 787

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           + L+H +   +  E A+  F E++  G+  D A+Y+ L+
Sbjct: 788 TTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLM 826


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 197/389 (50%), Gaps = 12/389 (3%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCIIMRKYARVQKV 147
           ++ + +V +Y+ ++E L K+ ++    +LV  M ++      ++ T+  ++  Y +  KV
Sbjct: 39  RDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKV 98

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
           EE+      +   G+  +   +  ++++LCKS  + +A E+ + M +    P   T++ L
Sbjct: 99  EESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTL 158

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  ++ NL  A  + ++M  +G   D+VTY  ++D LCKAGR+ EA  +++ M ++ C
Sbjct: 159 ISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGC 218

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    YS  V+      ++ DA     +M  +    +V  YN ++   CK+ K      
Sbjct: 219 APDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALE 278

Query: 327 VLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           +++ M +S G   N    + +++GL   G T EA  V   M +  C  D  TY+ ++   
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGL 338

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR--- 441
           C+ G++E+A +  + M ++   P+  T+  L++GLC  G ++++  ++E+M   G     
Sbjct: 339 CKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHH 398

Query: 442 --PSGETFGKLRKLLIKEGR-EDVLKFLQ 467
             PS  T+  L   L K GR +D LKF Q
Sbjct: 399 CPPSVSTYNALIGGLCKAGRIDDALKFFQ 427



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 173/387 (44%), Gaps = 40/387 (10%)

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           RT    N  TF  ++  +++  +  +       M    +  N+ ++NGLL  LCK +   
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH 62

Query: 184 KAQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           +A+E+   M     R  PD  TYS LL G+ K   +  +RE+ +E++  G  PD + Y  
Sbjct: 63  EAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +V  LCK+ R+ EAL +++ M    C PT   ++ L+     E  +E A     +M  +G
Sbjct: 123 VVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASG 182

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA----------------------- 337
           + ADV  YN L+   CKA + +   ++L+ M + G A                       
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAH 242

Query: 338 ------------PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKM 383
                       PN  T N IL+GL   G+ D A  +  +M     C  +   Y+ ++  
Sbjct: 243 QVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDG 302

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            C+ G  ++A  V + M      P + T+S L+NGLC  G + ++   + +M  +G +P+
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
             T+  L   L   GR    + + E+M
Sbjct: 363 AVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 146/303 (48%), Gaps = 9/303 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++++I    + +  ++   L+  M    +  +V T+  +M    +  +++EA      M+
Sbjct: 155 FNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK 214

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLP 217
             G   ++ A++  +  LCKS  V  A ++ + M+D    P+  TY+ +L+G  K   + 
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKID 274

Query: 218 RAREIFREMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            A E+  +M  + GC  ++V Y  +VD LCK GR  EA  ++++M    CRP    YS L
Sbjct: 275 TALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSL 334

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM----- 331
           V+      +IE+AV+   EM   G   +   Y +L+   C   +     R++++M     
Sbjct: 335 VNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGG 394

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGEL 390
                 P+  T N ++ GL   G  D+A + F+RM  + C+ D  +Y+ +++   + G  
Sbjct: 395 GGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454

Query: 391 EKA 393
            +A
Sbjct: 455 LQA 457



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 8/243 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY S +  L K  +      ++  MR +    NV T+  I+    +  K++ A+    
Sbjct: 222 VVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMME 281

Query: 156 VMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
            M    G   N+  ++ ++  LCK    ++A+ + + M +    PD  TYS L+ G  K 
Sbjct: 282 QMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKA 341

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-----CRP 268
             +  A E  REM   GC P+ VTY  +V  LC  GR+ EA  +V+ M S       C P
Sbjct: 342 GKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPP 401

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           +   Y+ L+       RI+DA+  F  M   G   D   Y+ ++    ++ +      +L
Sbjct: 402 SVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMIL 461

Query: 329 KDM 331
            ++
Sbjct: 462 SEV 464



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           MD T C P S  ++ LV+ +  + R  D       M    I  +V  YN L+   CK  +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 321 FKNVYRVLKDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
           +     +++DM S+G    P+  T + +L+G    G+ +E+  + + +I +    DA  Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T ++   C+   L +A ++ + M      P++ TF+ LI+G C +  +  +  LL+ M  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            G++    T+  L   L K GR    + L E+M
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213


>gi|226498918|ref|NP_001144625.1| uncharacterized protein LOC100277643 [Zea mays]
 gi|195644788|gb|ACG41862.1| hypothetical protein [Zea mays]
          Length = 492

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 205/421 (48%), Gaps = 14/421 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLE-KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA 108
           L+  LD++ IRVS   VE VL   + +    A  F     +   +EHS  +++ +++ L 
Sbjct: 61  LNAELDKADIRVSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILG 120

Query: 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           K R ++ MWD V +M+++++L++ TF  I    A        +  F  M +YG+T++  A
Sbjct: 121 KNRLFEPMWDTVKSMQSQQLLSLATFASIFSSLAATPG-GSPLKAFMDMPRYGMTRDTPA 179

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            N LLSALC++  +  A+      +      PD+ +Y+ILLEG     +L  ARE+F EM
Sbjct: 180 LNSLLSALCRANRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEM 239

Query: 227 VDT-GCNPD-IVTYGIMVDVLCKAGR---VDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           V   G  PD +  Y   +  L  +     + EA+  +  +    C P    +   +  + 
Sbjct: 240 VQAIGFYPDNVPAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHL 299

Query: 282 VENRIEDAVDTFLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              ++  A++ + + + + G++ D+ MYN +I         + +   L DM S GV P++
Sbjct: 300 EARQLRGAMNLWDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDT 359

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N++L  L+   +  EA  +F  M+K  C  +    ++ ++MF      E   KVW  
Sbjct: 360 NTYNVVLQLLLKGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCC 419

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL--IKE 457
           M      P     ++L+  L D  +  ++C   EDMI++GI+ S  T  KL++ L  IK+
Sbjct: 420 MVENGLPPLQECGNMLVAKLKDDRL-PEACKYAEDMIDRGIKLSSATLSKLKQRLQRIKK 478

Query: 458 G 458
           G
Sbjct: 479 G 479


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 199/429 (46%), Gaps = 23/429 (5%)

Query: 45  SPKVVLDTALDQS--GIRVSPEIVE--DVLEKFRNAGTLA-------FCFFKWAE----- 88
           +P V+L T L +    +R  P+ V   ++LEKF      A       FC     +     
Sbjct: 121 NPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRV 180

Query: 89  ----KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYAR 143
               + +++      Y+ MI SL    +  +   ++N + +      V T+ I++     
Sbjct: 181 LDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATML 240

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
              V+EA+   + M   G+  ++  +N ++  +CK   V +A E+   ++ +   PD  +
Sbjct: 241 EGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVIS 300

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ILL             ++  +M    C+P++VTY I++  LC+ G+++EA+ ++K M 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P ++ Y  L+  +  E R++ A++    M  +G L D+  YN ++   CK  K  
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKAD 420

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA-YRVFRRMIKLCEADADTYTMMI 381
               +   +   G +PNS + N + + L   G+   A + +   M    + D  TY  MI
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+ G +++AF++   M+   F PS+ T+++++ G C    + D+  +LE M+  G R
Sbjct: 481 SCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCR 540

Query: 442 PSGETFGKL 450
           P+  T+  L
Sbjct: 541 PNETTYTVL 549



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 158/326 (48%), Gaps = 1/326 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I  +  R     E+++    M + G   ++     L+      +N+ KA  + + ++   
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD   Y+ L+ G+ K   +  A  +   M     +PD VTY IM+  LC  G++D AL 
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  + S  C+PT   Y++L+    +E  +++A+    EM   G+  D+  YN +I   C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K       + +++++  KG  P+  + NI+L  L+ +G+ +E  ++  +M  + C+ +  
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+++I   C+ G++E+A  + K MK K   P  +++  LI   C +G +  +   LE M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           I  G  P    +  +   L K G+ D
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKAD 420



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 149/308 (48%), Gaps = 2/308 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  V +Y+ ++ +L    +++    L+  M +++   NV T+ I++    R  K+EEA+ 
Sbjct: 295 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMN 354

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
              +M++ G+T +  +++ L++A C+   +  A E  + M  D  +PD   Y+ +L    
Sbjct: 355 LLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLC 414

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K+    +A EIF ++ + GC+P+  +Y  M   L  +G    AL ++  M S    P   
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++     E  +++A +  ++M        V  YN ++  FCKA++ ++   VL+ M
Sbjct: 475 TYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESM 534

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G  PN  T  +++ G+   G   EA  +   ++++      ++  + + F     L+
Sbjct: 535 VGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQ 594

Query: 392 KAFKVWKY 399
           ++ + + Y
Sbjct: 595 RSSQTFGY 602



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C++G   E+L ++++M      P   + + L+  +     I  AV     +EK G   DV
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YNALI  FCK N+  +  RVL  M SK  +P++ T NI++  L  RG+ D A +V  +
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 366 MIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           ++   C+    TYT++I+     G +++A K+   M  +   P M T++ +I G+C +G+
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V  +  ++ ++  KG  P   ++  L + L+ +G+ +  + L  KM
Sbjct: 279 VDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 1/157 (0%)

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
           C++  +     +L+ M  KG  P+   C  ++ G        +A RV   + K  + D  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y  +I  FC+   ++ A +V   M+ K F P   T++++I  LC +G +  +  +L  +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 436 IEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQEKMN 471
           +    +P+  T+  L    +++ G ++ LK + E ++
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 160/342 (46%), Gaps = 6/342 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            V T+  ++  Y R  ++E+A    N M       +   FN L+ ALC    +  A  +F
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAVF 274

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M  R   P   TYSILL+   K+    +A  +  EM   GC PDIVTY ++++ +C  
Sbjct: 275 DDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNE 334

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G VDEAL I+ ++ S  C+P +  Y+ ++ +     R ++  +   EM  N    D   +
Sbjct: 335 GDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTF 394

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++ + C+         V+  M+  G   +  T + IL+GL   G  D+A  +  R+  
Sbjct: 395 NTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKS 454

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C+ D   YT ++K  C   + E+A ++   M      P   TF+ ++  LC KG+V  
Sbjct: 455 YGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDR 514

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  ++E M E G  P   T+  +   L  E   +D ++ L +
Sbjct: 515 AIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSD 556



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 179/380 (47%), Gaps = 4/380 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y  ++++  K   Y+    L++ MR K    ++ T+ +++        V+EA+   
Sbjct: 285 SVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNIL 344

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
           + +  +G   +   +  +L +LC S+  ++ +E+   M  +   PD  T++ ++    + 
Sbjct: 345 SNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQ 404

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + RA E+   M + GC  DIVTY  ++D LC  GRVD+A+ ++  + S  C+P +  Y
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++       + E A +   EM  +    D   +N ++ + C+        RV++ M+ 
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            G +P+  T N I++GL      D+A  +   +    C+ D  T+  ++K  C     E 
Sbjct: 525 NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWED 584

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M      P   TF+ +I  LC KG+++ +   L+ M E G  P+  T+  +  
Sbjct: 585 AEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVD 644

Query: 453 LLIKEGR-EDVLKFLQEKMN 471
            L+K G+ +  L+ L    N
Sbjct: 645 ALLKAGKAQAALELLSGMTN 664



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 174/365 (47%), Gaps = 5/365 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y  +++SL    +++ + +L+  M +      E TF  I+    +   V+ A+   + M 
Sbjct: 359 YTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMS 418

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           ++G   ++  ++ +L  LC    V  A E+   +K     PD+  Y+ +L+G        
Sbjct: 419 EHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWE 478

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           RA E+  EM+ + C PD VT+  +V  LC+ G VD A+ +V+ M    C P    Y+ ++
Sbjct: 479 RAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCII 538

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                E+ I+DA++   +++  G   D+  +N L+   C  +++++  +++ +M      
Sbjct: 539 DGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCP 598

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKV 396
           P+  T N ++  L  +G   +A    + M +  C  ++ TY++++    + G+ + A ++
Sbjct: 599 PDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALEL 658

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              M      P + T++ +I+ L   G + ++  LL  M+  G+ P   T+  L   + +
Sbjct: 659 LSGM--TNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCR 716

Query: 457 EGRED 461
           E   D
Sbjct: 717 EDGTD 721



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 173 LSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           L +L +   + +A  +FD M     R  P     +IL++    D  +  A  +F  +   
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL--- 213

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G +  +VTY  MV+  C+AGR+++A  ++  M      P +F ++ L+    V  RI DA
Sbjct: 214 GPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFP---PDTFTFNPLIRALCVRGRIPDA 270

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +  F +M   G    V  Y+ L+ A CK + ++    +L +M +KG  P+  T N+++N 
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA 330

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +   G+ DEA  +   +    C+ DA TYT ++K  C     ++  ++   M      P 
Sbjct: 331 MCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPD 390

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             TF+ ++  LC +G+V  +  +++ M E G      T+  +   L   GR D
Sbjct: 391 EVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVD 443



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 13/288 (4%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T+  I+        +++A+   + +Q  G   ++  FN LL  LC       A+++ 
Sbjct: 530 DIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLM 589

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + M+    PD  T++ ++    +   L +A E  + M + GC P+  TY I+VD L KA
Sbjct: 590 ANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKA 649

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+   AL ++  M +    P    Y+ ++       ++E+A+D    M  NG+  D   Y
Sbjct: 650 GKAQAALELLSGMTNGT--PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTY 707

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            +L    C+ +      R+L+ +   G++P++   N +L G      TD A   F  M+ 
Sbjct: 708 RSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVS 767

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
             C  D  TY ++++    GG L++A         KR + S+ +  VL
Sbjct: 768 SGCMPDESTYVILLEALAYGGLLDEA---------KRLLASLCSLGVL 806



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 111/238 (46%), Gaps = 2/238 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++++++ L  + +++    L+ N MR+    +  TF  ++    +   + +A+ T  +M 
Sbjct: 569 FNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           + G   N + ++ ++ AL K+   + A E+   M +   PD  TY+ ++    K   +  
Sbjct: 629 ENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG-TPDLITYNTVISNLTKAGKMEE 687

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++ R MV  G  PD  TY  +   +C+    D A+ +++ +  T   P +  Y+ ++ 
Sbjct: 688 ALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLL 747

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            +  + R + A+D F  M  +G + D + Y  L+ A           R+L  + S GV
Sbjct: 748 GFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           P    CNI++  L   G   +A RVF  +     A   TY  M+  +C+ G +E A ++ 
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAERVFAALGP--SATVVTYNTMVNGYCRAGRIEDARRLI 242

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M    F P   TF+ LI  LC +G + D+  + +DM+ +G  PS  T+  L     KE
Sbjct: 243 NGMP---FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKE 299

Query: 458 -GREDVLKFLQE 468
            G    +  L E
Sbjct: 300 SGYRQAMALLDE 311


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 181/350 (51%), Gaps = 3/350 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++IE+  K+R++     ++  MR +   LN  T+ +++    R   VEEA     
Sbjct: 244 VYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKK 303

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            M+ YG+  +   +  L++ LCKS+   +A+ + D M      P+   Y+ L++G+ ++ 
Sbjct: 304 DMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREG 363

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N   A ++ +EMV  G  P+ +TY  +V  LCK G++D A  ++K M     RP +  Y+
Sbjct: 364 NADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 423

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++  +   +  +DA     EME  GI  +V  Y+ +I   C++ + +    +L++M +K
Sbjct: 424 LIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 483

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+ PN+     +++G    G    A  +F +M K+    D   Y  +I    + G +E++
Sbjct: 484 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 543

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            K +  M+ +  +P+  T+S LI+G    G +  +  L++ M++ G++P+
Sbjct: 544 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 593



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 208/437 (47%), Gaps = 16/437 (3%)

Query: 45  SPKVVLDT---ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-----KQQNYEHS 96
           SP VVL +   AL  SG R SP +++ +++ ++ +G +       AE     + +    S
Sbjct: 154 SPPVVLASIHRALSDSGHR-SPAVLDVLVDTYKKSGRVQ----DAAEVVLMMRDRGMAPS 208

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +R  +++++ L +     ++W +   M    +  +V T+  ++  Y +V++ + A     
Sbjct: 209 IRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLV 268

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDP 214
            M++ G   N   +N L++ LC+S  V +A      M+D   +PD  TY  L+ G  K  
Sbjct: 269 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 328

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A+ +  EM      P++V Y  ++D   + G  DEA  ++K M +   +P    Y 
Sbjct: 329 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYD 388

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV       +++ A     +M ++    D   YN +I    + +  K+ +R+L +M + 
Sbjct: 389 NLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA 448

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G++PN  T +I+++GL   GE ++A  +   M  K  + +A  Y  +I  +C+ G +  A
Sbjct: 449 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 508

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +++  M     +P ++ ++ LI GL   G V +S      M E+G+ P+  T+  L   
Sbjct: 509 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 568

Query: 454 LIKEGREDVLKFLQEKM 470
            +K G  +  + L ++M
Sbjct: 569 YLKNGDLESAEQLVQRM 585



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 182/397 (45%), Gaps = 38/397 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I  L K R+      L++ M    +  NV  +  ++  + R    +EA      M 
Sbjct: 317 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 376

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
             GV  N   ++ L+  LCK   + +A  +   M +D   PD+ TY++++EG  +  +  
Sbjct: 377 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 436

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  EM + G +P++ TY IM+  LC++G  ++A  +++ M +   +P +F+Y+ L+
Sbjct: 437 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 496

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  E  +  A + F +M K  +L D+  YN+LI    K  + +   +    M  +G+ 
Sbjct: 497 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 556

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM------------IKLCEA------------- 372
           PN  T + +++G +  G+ + A ++ +RM            I L E+             
Sbjct: 557 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 616

Query: 373 -----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                      D   Y ++I      G +E AF+V   ++    +P +H +S LI+GLC 
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 676

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
                 +  +L++M +KG+ P+   +  L   L K G
Sbjct: 677 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 713



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 181/364 (49%), Gaps = 11/364 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           +RAY S    LA I  ++ + D  +  R+  +L+V     ++  Y +  +V++A     +
Sbjct: 149 IRAYPSPPVVLASI--HRALSD--SGHRSPAVLDV-----LVDTYKKSGRVQDAAEVVLM 199

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M+  G+  ++   N LL  L ++  +    ++ + M    I PD  TYS L+E + K   
Sbjct: 200 MRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVRE 259

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++  EM + GC  + VTY +++  LC++G V+EA G  K M+     P  F Y  
Sbjct: 260 FDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGA 319

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++      R  +A     EM    +  +V +Y  LI  F +       ++++K+M + G
Sbjct: 320 LINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG 379

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAF 394
           V PN  T + ++ GL   G+ D A  + ++M++     D  TY ++I+   +    + AF
Sbjct: 380 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAF 439

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M+     P+++T+S++I+GLC  G    +  LLE+M  KG++P+   +  L    
Sbjct: 440 RLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 499

Query: 455 IKEG 458
            +EG
Sbjct: 500 CREG 503



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 160/336 (47%), Gaps = 21/336 (6%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           ML+   + I++   +    +E A    + ++K G   ++  ++ L+S LCK+ +  KA  
Sbjct: 626 MLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 685

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           I D M  + + P+   Y+ L++G  K  ++  AR +F  ++  G  P+ VTY  ++D  C
Sbjct: 686 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC 745

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G +  A  +   M +T   P +F+YSVL         +E A+    EM   G  A ++
Sbjct: 746 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 804

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR- 365
            +N L+  FCK  K +   ++L  +  +G+ PN+ T   I++GL   G+  E + +F   
Sbjct: 805 SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 864

Query: 366 ------------------MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
                             MI   +   D    MI+  C+ G L+KA  +   +  K    
Sbjct: 865 QQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 924

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
              ++  +++ LC KG +S++  LL++M ++GI PS
Sbjct: 925 GCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPS 960



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 164/376 (43%), Gaps = 39/376 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+ I++    +  + E+A      M   G+  N   +  L+S  C+  NV  A EIF
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 512

Query: 190 DCM-KDRFIPDSKT-----------------------------------YSILLEGWGKD 213
           D M K   +PD                                      YS L+ G+ K+
Sbjct: 513 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 572

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A ++ + M+DTG  P+ V Y  +++   K+  +++     KSM        + IY
Sbjct: 573 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 632

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            +L+H       +E A      +EKNG + DV +Y++LI   CK    +  + +L +M+ 
Sbjct: 633 GILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSK 692

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KGV PN    N +++GL   G+   A  VF  ++ K    +  TYT +I   C+ G++  
Sbjct: 693 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISN 752

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF ++  M      P    +SVL  G    G +  +  L+E+M  +G   S  +F  L  
Sbjct: 753 AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVD 811

Query: 453 LLIKEGR-EDVLKFLQ 467
              K G+ ++ LK L 
Sbjct: 812 GFCKRGKMQETLKLLH 827



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 159/362 (43%), Gaps = 2/362 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S+I  L+K+ + +        M+ + +L  E T+  ++  Y +   +E A      M 
Sbjct: 527 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 586

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLP 217
             G+  N   +  LL +  KS ++ K    F  M D+ +  D++ Y IL+       N+ 
Sbjct: 587 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 646

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   +   G  PD+  Y  ++  LCK    ++A GI+  M      P    Y+ L+
Sbjct: 647 AAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALI 706

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   I  A + F  +   G++ +   Y +LI   CK     N + +  +M + G+ 
Sbjct: 707 DGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGIT 766

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           P++   +++  G    G+ ++A  +   M     A   ++  ++  FC+ G++++  K+ 
Sbjct: 767 PDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLL 826

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             +  +  +P+  T   +I+GL + G +S+   +  ++ +K    +   F  L   +I +
Sbjct: 827 HVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQ 886

Query: 458 GR 459
           G+
Sbjct: 887 GK 888



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 1/173 (0%)

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           A+ + L+  + K+ + ++   V+  M  +G+AP+ R CN +L  L+        ++V   
Sbjct: 175 AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREF 234

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+      D  TY+ +I+ +C+  E + A KV   M+ +    +  T++VLI GLC  G 
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 294

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           V ++    +DM + G+ P G T+G L   L K  R +  K L ++M+    +P
Sbjct: 295 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 347



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 138/359 (38%), Gaps = 89/359 (24%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           R Y  +I +L+     +  + +++ + +   + +V  +  ++    +    E+A    + 
Sbjct: 630 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 689

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M K GV  N+  +N L+  LCKS ++  A+ +F+ +  +  +P+  TY+ L++G  K  +
Sbjct: 690 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 749

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIM---------------------------------- 241
           +  A  ++ EM+ TG  PD   Y ++                                  
Sbjct: 750 ISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNL 809

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSF----IYSVL--------VHTYGVENRIE-- 287
           VD  CK G++ E L ++  +      P +     I S L        VHT  VE + +  
Sbjct: 810 VDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTS 869

Query: 288 ----------------------DAVDTFL-------EMEKNGILADV----------AMY 308
                                 D VD  +        ++K  +L DV          + Y
Sbjct: 870 ESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSY 929

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
            A++   C+  K      +LK+M+ +G+ P+   C I+L  L   G   E   V   M+
Sbjct: 930 LAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNML 988


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 181/362 (50%), Gaps = 8/362 (2%)

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE----TFCIIMRKY 141
           W E Q   + +V++++S++  + +   +    +  N +   + LN+     TF ++++  
Sbjct: 123 WGEFQ--CKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAM 180

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDS 200
            R+  V++A+  F  +       +   ++ L+  LCK + + +A  + D M+ +   P+ 
Sbjct: 181 CRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNL 240

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
             +++L+    K  +L RA ++   M   GC P+ VTY  +V  LC  G++++A+ ++  
Sbjct: 241 VAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQ 300

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M S  C P    +  L++ + ++ R  D     + +E  G   +  +Y++LI   CK  K
Sbjct: 301 MVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGK 360

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTM 379
           F     + K+M  KG  PN+   + +++GL   G+ DEA      M  K    ++ TY+ 
Sbjct: 361 FNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSS 420

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +++ + + G+  KA  VWK M     I +   +S+LINGLC  G   ++ ++ + M+ +G
Sbjct: 421 LMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRG 480

Query: 440 IR 441
           I+
Sbjct: 481 IK 482



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 161/322 (50%), Gaps = 4/322 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  +M    + ++++EAV   + MQ  G   NL AFN L+SALCK  ++ +A ++ D M
Sbjct: 207 TYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNM 266

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             +  +P+  TY+ L+ G      L +A  +  +MV   C P+ VT+G +++     GR 
Sbjct: 267 FLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRA 326

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +   ++ S+++   R   ++YS L+     E +   A++ + EM   G   +  +Y+AL
Sbjct: 327 SDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSAL 386

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I   C+  K       L +M +KG  PNS T + ++ G    G++ +A  V++ M    C
Sbjct: 387 IDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNC 446

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             +   Y+++I   C+ G+  +A  VWK M  +     +  +S +I+G C+  +V     
Sbjct: 447 IHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLK 506

Query: 431 LLEDMIEKG--IRPSGETFGKL 450
           L   M+ +G  ++P   T+  L
Sbjct: 507 LFNQMLCQGPVVQPDVITYNIL 528



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 184/382 (48%), Gaps = 7/382 (1%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYA 142
           FK   +  +Y+    +++S+IES A    ++ + ++++ M+ +R + +E  F ++ + Y 
Sbjct: 48  FKSGTQMGSYKLGDLSFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFKAYG 107

Query: 143 RVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM----KDRFI 197
           +    E+AV  F+ M  ++   Q + +FN +L+ + +     +A E ++ +         
Sbjct: 108 KAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIH 167

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P++ T++++++   +   + +A E+FRE+    C PD  TY  ++  LCK  R+DEA+ +
Sbjct: 168 PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M      P    ++VL+     +  +  A      M   G + +   YNAL+   C 
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADT 376
             K +    +L  M S    PN  T   ++NG + +G   +  RV   +  +    +   
Sbjct: 288 KGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYV 347

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+ +I   C+ G+  +A ++WK M  K   P+   +S LI+GLC +G + ++   L +M 
Sbjct: 348 YSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMK 407

Query: 437 EKGIRPSGETFGKLRKLLIKEG 458
            KG  P+  T+  L +   + G
Sbjct: 408 NKGYLPNSFTYSSLMRGYFEAG 429



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 5/307 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           A++ +I +L K         LV+ M  K  + N  T+  ++       K+E+AV   N M
Sbjct: 242 AFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQM 301

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
                  N   F  L++             +   ++ R    +   YS L+ G  K+   
Sbjct: 302 VSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKF 361

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+++EMV  GC P+ + Y  ++D LC+ G++DEA G +  M +    P SF YS L
Sbjct: 362 NQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSL 421

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y        A+  + EM  N  + +   Y+ LI   CK  KF     V K M S+G+
Sbjct: 422 MRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGI 481

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI---KLCEADADTYTMMIKMFCQGGELEKA 393
             +    + +++G       ++  ++F +M+    + + D  TY +++  FC    + +A
Sbjct: 482 KLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRA 541

Query: 394 FKVWKYM 400
             +   M
Sbjct: 542 IDILNIM 548



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 137/298 (45%), Gaps = 6/298 (2%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           +F  L+ +   S + R  +E+   MK +R +   K + ++ + +GK     +A ++F  M
Sbjct: 63  SFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHRM 122

Query: 227 V-DTGCNPDIVTYGIMVDVLCKAGRVDEALGI---VKSMDSTVCRPTSFIYSVLVHTYGV 282
             +  C   + ++  +++V+ + G  + AL     V +  S    P +  +++++     
Sbjct: 123 WGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCR 182

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
              ++ A++ F E+       D   Y+ L+   CK  +      +L +M  +G  PN   
Sbjct: 183 LGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVA 242

Query: 343 CNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N++++ L  +G+   A ++   M +K C  +  TY  ++   C  G+LEKA  +   M 
Sbjct: 243 FNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMV 302

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             + +P+  TF  LING   +G  SD   +L  +  +G R +   +  L   L KEG+
Sbjct: 303 SNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGK 360


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 158/326 (48%), Gaps = 1/326 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I  +  R     E+++    M + G   ++     L+      +NV KA  + + ++   
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG 150

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD   Y+ L+ G+ K   +  A  +   M     +PD VTY IM+  LC  G++D AL 
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  + S  C+PT   Y++L+    +E  +++A+    EM   G+  D+  YN +I   C
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMC 270

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K       + +++++  KG  P+  + NI+L  L+ +G+ +E  ++  +M  + C+ +  
Sbjct: 271 KEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 330

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+++I   C+ G++E+A  + K MK K   P  +++  LI   C +G +  +   LE M
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 390

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           I  G  P    +  +   L K G+ D
Sbjct: 391 ISDGCLPDIVNYNTVLATLCKNGKAD 416



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 199/429 (46%), Gaps = 23/429 (5%)

Query: 45  SPKVVLDTALDQS--GIRVSPEIVE--DVLEKFRNAGTLA-------FCFFKWAE----- 88
           +P V+L T L +    +R  P+ V   ++LEKF      A       FC     +     
Sbjct: 117 NPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRV 176

Query: 89  ----KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYAR 143
               + +++      Y+ MI SL    +  +   +++ + +      V T+ I++     
Sbjct: 177 LDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATML 236

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
              V+EA+   + M   G+  ++  +N ++  +CK   V +A E+   ++ +   PD  +
Sbjct: 237 EGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVIS 296

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ILL             ++  +M    C+P++VTY I++  LC+ G+++EA+ ++K M 
Sbjct: 297 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 356

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P ++ Y  L+  +  E R++ A++    M  +G L D+  YN ++   CK  K  
Sbjct: 357 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKAD 416

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
               +   +   G +PNS + N + + L   G+   A  +   M+    + D  TY  MI
Sbjct: 417 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMI 476

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+ G ++KAF++   M+   F PS+ T+++++ G C    + D+  +L+ M+  G R
Sbjct: 477 SCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCR 536

Query: 442 PSGETFGKL 450
           P+  T+  L
Sbjct: 537 PNETTYTVL 545



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 156/324 (48%), Gaps = 3/324 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR- 195
           +++ +  ++ V +AV    +++K+G   ++ A+N L++  CK   +  A  + D M+ + 
Sbjct: 126 LIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 184

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F PD+ TY+I++        L  A ++  +++   C P ++TY I+++     G VDEAL
Sbjct: 185 FSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEAL 244

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M S   +P  F Y+ ++     E  ++ A +    +E  G   DV  YN L+ A 
Sbjct: 245 KLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRAL 304

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
               K++   +++  M S+   PN  T +I++  L   G+ +EA  + + M  K    DA
Sbjct: 305 LNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 364

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +Y  +I  FC+ G L+ A +  + M     +P +  ++ ++  LC  G    +  +   
Sbjct: 365 YSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK 424

Query: 435 MIEKGIRPSGETFGKLRKLLIKEG 458
           + E G  P+  ++  +   L   G
Sbjct: 425 LGEVGCSPNSSSYNTMFSALWSSG 448



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 135/278 (48%), Gaps = 2/278 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  V +Y+ ++ +L    +++    L+  M +++   NV T+ I++    R  K+EEA+ 
Sbjct: 291 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMN 350

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
              +M++ G+T +  +++ L++A C+   +  A E  + M  D  +PD   Y+ +L    
Sbjct: 351 LLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLC 410

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K+    +A EIF ++ + GC+P+  +Y  M   L  +G    AL ++  M S    P   
Sbjct: 411 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEI 470

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++     E  ++ A +  ++M        V  YN ++  FCKA++ ++   VL  M
Sbjct: 471 TYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSM 530

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
              G  PN  T  +++ G+   G   EA  +   ++++
Sbjct: 531 VGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 568



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C++G   E+L ++++M      P   + + L+  +     +  AV     +EK G   DV
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDV 154

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YNALI  FCK N+  +  RVL  M SK  +P++ T NI++  L  RG+ D A +V  +
Sbjct: 155 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQ 214

Query: 366 MIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           ++   C+    TYT++I+     G +++A K+   M  +   P M T++ +I G+C +G+
Sbjct: 215 LLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGM 274

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V  +  ++ ++  KG  P   ++  L + L+ +G+ +  + L  KM
Sbjct: 275 VDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 320



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 1/157 (0%)

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
           C++  +     +L+ M  KG  P+   C  ++ G        +A RV   + K  + D  
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVF 155

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y  +I  FC+   ++ A +V   M+ K F P   T++++I  LC +G +  +  +L+ +
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 436 IEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQEKMN 471
           +    +P+  T+  L    +++ G ++ LK L E ++
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS 252


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 190/419 (45%), Gaps = 39/419 (9%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYA 142
           F     ++ +      ++S++    +I       D+V+ M  K    +V T+  ++    
Sbjct: 250 FVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMC 309

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           ++ + E+A+     M     + N   +N L+SALCK   +  A ++   +  +  +PD  
Sbjct: 310 KLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVC 369

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           T++ L++G     N   A E+F EM + GC PD  TY I++D LC   R+ EAL ++K M
Sbjct: 370 TFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEM 429

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
           +S+ C   + +Y+ L+       RIEDA + F +ME  G+      YN LI   CK  + 
Sbjct: 430 ESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRV 489

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMM 380
           +   +++  M  +G+ P+  T N +L      G+ ++A  + + M    CE D  TY  +
Sbjct: 490 EEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTL 549

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN----------------------- 417
           I   C+ G ++ A K+ + +++K  + + H ++ +I                        
Sbjct: 550 IGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSD 609

Query: 418 ------------GLCD-KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
                       GLC+  G + ++     +M+EKGI P   +FG L + L     ED L
Sbjct: 610 PPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTL 668



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 183/408 (44%), Gaps = 44/408 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           ++ ++  V  Y+S+I  + K+ +++   +++  M  +    N  T+  ++    +  ++E
Sbjct: 291 EKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIE 350

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A     ++   G+  ++  FN L+  LC SKN   A E+F+ MK++   PD  TYSIL+
Sbjct: 351 AATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILI 410

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA---------LGIV 258
           +    +  L  A  + +EM  +GC  + V Y  ++D LCK+ R+++A         LG+ 
Sbjct: 411 DSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVS 470

Query: 259 KS-----------------------MDSTV---CRPTSFIYSVLVHTYGVENRIEDAVDT 292
           +S                       MD  +    +P  F Y+ L+  +     IE A D 
Sbjct: 471 RSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDI 530

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
              M  NG   D+  Y  LIG  C+A +     ++L+ +  KG+       N ++  L  
Sbjct: 531 VQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFM 590

Query: 353 RGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMH 410
           R  T E  R+FR M++  +  DA T+ ++ +  C GG  +++A      M  K  +P   
Sbjct: 591 RKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFP 650

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-----FGKLRKL 453
           +F  L  GLC   +      L+  ++EK      ET     F K+RK 
Sbjct: 651 SFGFLAEGLCSLSMEDTLIELINMVMEKAQMSERETSMIRGFLKIRKF 698



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 170/357 (47%), Gaps = 3/357 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFN 155
           V  ++ +I++L K  Q +    ++  M    +   E TF  +M+ +     +  A+    
Sbjct: 158 VSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKK 217

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M  YG      +   L++  CK   V +A   + +  ++ F PD  T++ L+ G+ +  
Sbjct: 218 QMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIG 277

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N+  A +I   M++ G +PD+ TY  ++  +CK G  ++A+ I++ M    C P +  Y+
Sbjct: 278 NVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYN 337

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+     EN IE A D    +   G+L DV  +N LI   C +        + ++M +K
Sbjct: 338 TLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNK 397

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G  P+  T +I+++ L       EA  + + M    C  +A  Y  +I   C+   +E A
Sbjct: 398 GCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDA 457

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +++  M+L     S  T++ LI+GLC    V ++  L++ MI +G++P   T+  L
Sbjct: 458 EEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSL 514



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 178/379 (46%), Gaps = 6/379 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
            H +    +++  L +   +  +  L+  +++   + N  TF  +++ +    ++E  + 
Sbjct: 52  HHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLK 111

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
                 + G   +   +N  L+AL +   ++  + +   M  +  + D  T+++L++   
Sbjct: 112 ILE--NELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALC 169

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   L  A  +  EM + G  PD +T+  ++    + G ++ AL + K M    C  T+ 
Sbjct: 170 KAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNV 229

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
              VLV+ +  E R+E+A+   LE+ + G   D   +N+L+  FC+     +   ++  M
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
             KG  P+  T N +++G+   GE ++A  + ++MI + C  +  TY  +I   C+  E+
Sbjct: 290 IEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEI 349

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           E A  + + +  K  +P + TF+ LI GLC       +  + E+M  KG +P   T+  L
Sbjct: 350 EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409

Query: 451 RKLLIKEGR-EDVLKFLQE 468
              L  E R ++ L  L+E
Sbjct: 410 IDSLCYERRLKEALMLLKE 428



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 164/319 (51%), Gaps = 2/319 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G+  +++ FN L+ ALCK+  +R A  + + M +  + PD  T++ L++G+ ++ +
Sbjct: 149 MVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGD 208

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A ++ ++M+  GC    V+  ++V+  CK GRV+EAL  V  +      P    ++ 
Sbjct: 209 LNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNS 268

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           LV+ +     + DA+D    M + G   DV  YN+LI   CK  +F+    +L+ M  + 
Sbjct: 269 LVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRE 328

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
            +PN+ T N +++ L    E + A  + R ++ K    D  T+  +I+  C     + A 
Sbjct: 329 CSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAM 388

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++++ MK K   P   T+S+LI+ LC +  + ++ +LL++M   G   +   +  L   L
Sbjct: 389 EMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGL 448

Query: 455 IKEGREDVLKFLQEKMNLL 473
            K  R +  + + ++M LL
Sbjct: 449 CKSRRIEDAEEIFDQMELL 467



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 6/317 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDP 214
           ++  G   N   F  L+ +     N  + + +   +++   F PD+  Y+I L    +D 
Sbjct: 81  LKSSGSIPNATTFATLIQSF---TNFHEIENLLKILENELGFKPDTNFYNIALNALVEDN 137

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L     +  +MV+ G   D+ T+ +++  LCKA ++  A+ +++ M +   +P    ++
Sbjct: 138 KLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFT 197

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +  E  +  A+    +M   G L        L+  FCK  + +   R + +++ +
Sbjct: 198 TLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEE 257

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G +P+  T N ++NG    G  ++A  +   MI K  + D  TY  +I   C+ GE EKA
Sbjct: 258 GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKA 317

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            ++ + M L+   P+  T++ LI+ LC +  +  +  L   ++ KG+ P   TF  L + 
Sbjct: 318 IEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQG 377

Query: 454 LIKEGREDVLKFLQEKM 470
           L     +D+   + E+M
Sbjct: 378 LCLSKNQDIAMEMFEEM 394


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 8/327 (2%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203
             ++E+A+  F  M+  GV  +L +++ LLSAL  S  + +A  +F  M     PD  TY
Sbjct: 154 ANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS--PDIMTY 211

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           ++L++G+ K      A+ + +E++  G  P++ TY I+++  CK  +V+EA  +   M  
Sbjct: 212 NVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIE 271

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
           + C P +  ++ L+  +     +EDA+  F EMEK G  A +  YN LI + CK  K   
Sbjct: 272 SNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCK--KRGG 329

Query: 324 VYRVLKDMN---SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380
           VY  +   N     G+ P   T N ++ G        EA + F  M   C  +  TY+++
Sbjct: 330 VYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSIL 389

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+   +++A K  + MK   + P++ T+  LING C  G +  + +  E M   G 
Sbjct: 390 IDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGC 449

Query: 441 RPSGETFGKLRKLLIKEGR-EDVLKFL 466
            P+   F  L   L K  R  D L+ L
Sbjct: 450 APNTVIFNTLIDGLCKAERANDGLRLL 476



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 180/385 (46%), Gaps = 12/385 (3%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQK 159
           ++++  L +I Q      L   M+    L    +  I++R +    +V +A+     M+K
Sbjct: 71  NTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRK 130

Query: 160 YGVTQNLAAFNGLLSALC---KSKN-VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
              +     +N +L  LC   KS N + +A E F  MK   + PD ++Y ILL       
Sbjct: 131 SSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSG 190

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  +F  M    C+PDI+TY +++D  CK G+  EA  ++K +      P  F YS
Sbjct: 191 RMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS 247

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           ++++ Y   +++E+A + F++M ++  + +   +N LI  FCKA   ++  ++  +M   
Sbjct: 248 IIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI 307

Query: 335 GVAPNSRTCNIILNGLIG-RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           G      T N +++ L   RG    A  +F ++          TY  +I+ FC    L +
Sbjct: 308 GCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSE 367

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A + +  M+  +  P++ T+S+LI+GLC    + ++   LEDM   G  P+  T+G L  
Sbjct: 368 AMQYFDEME-GKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLIN 426

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEP 477
              K G         EKM L    P
Sbjct: 427 GFCKCGELKSALLFFEKMKLAGCAP 451



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 180/394 (45%), Gaps = 16/394 (4%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142
           FFK   K    E  + +YH ++ +L+   +      L +AM      ++ T+ ++M  Y 
Sbjct: 163 FFKEM-KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSP--DIMTYNVLMDGYC 219

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSK 201
           ++ +  EA      + K G   N+  ++ +++  CK   V +A E+F  M +   +P++ 
Sbjct: 220 KIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAV 279

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA-GRVDEALGIVKS 260
           T++ L+ G+ K   L  A ++F EM   GC   IVTY  ++D LCK  G V  A+ +   
Sbjct: 280 TFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNK 339

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           ++     PT   Y+ L+  +    R+ +A+  F EME      +V  Y+ LI   CK  +
Sbjct: 340 LEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRR 398

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTM 379
            K   + L+DM + G  P   T   ++NG    GE   A   F +M +  C  +   +  
Sbjct: 399 MKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNT 458

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C+        ++  +M  +   P + T++ LI+GLC    V D+  L + M    
Sbjct: 459 LIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---A 515

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
             P+  TF  L + L  +      K ++E  N+L
Sbjct: 516 CAPNVTTFNFLIRGLCAQ------KKVEEARNIL 543



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 8/305 (2%)

Query: 170 NGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N LLS L  ++   +A  +F + +   F P++ TY++L+ G+ K   + +A  +F +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +G  P+  T   ++  LC+ G++  AL + + M +    PTS  +++L+  + +  R+ D
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFC----KANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           A+    +M K+        YN ++   C     AN+ +      K+M + GV P+  + +
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           I+L+ L   G   EA+ +F  M   C  D  TY +++  +C+ G+  +A  + K +    
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT--CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAG 238

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVL 463
           + P++ T+S++IN  C    V ++  +   MIE    P+  TF  L     K G  ED +
Sbjct: 239 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 298

Query: 464 KFLQE 468
           K   E
Sbjct: 299 KLFAE 303


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 164/353 (46%), Gaps = 38/353 (10%)

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGK 212
           F   Q  GVT NL   N L++  C   ++  A  +F + +K  + PD+ T + L++G   
Sbjct: 116 FKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCF 175

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              + RA     ++V  G   D V+YG +++ LCKAG       +++ ++    +P   +
Sbjct: 176 CGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVM 235

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ ++H      R+ DA D + EM   GI  +V  YN LI  FC     K  + +L +M 
Sbjct: 236 YTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK 295

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-------------------------- 366
            K + P+  T NI+++ L   G+ DEA  +F  M                          
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLE 355

Query: 367 --IKLC--------EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
             I LC        + D  +YT+++   C+GG LE A + ++++ +K +  ++ T++V+I
Sbjct: 356 RAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 415

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           NGLC  G+  D   L   M  KG  P   TF  +   L ++   D   KFL+E
Sbjct: 416 NGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLRE 468



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 137/279 (49%), Gaps = 2/279 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           Q ++    +Y ++I  L K  + + +  L+  +    +  +V  +  I+    + ++V +
Sbjct: 192 QGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGD 251

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A   ++ M   G++ N+  +N L+   C   N+++A  + + MK + I PD  T++IL++
Sbjct: 252 ACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILID 311

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
             GK+  +  A  +F EM      P+IVTY  ++D LCK   ++ A+ + K M     +P
Sbjct: 312 ALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQP 371

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             + Y++L+       R+E+A   F  +   G   +V  YN +I   CKA  F +V  + 
Sbjct: 372 DVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLK 431

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
             M  KG  P++ T   I+  L  + E D+A +  R MI
Sbjct: 432 SKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMI 470



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 140/297 (47%), Gaps = 2/297 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           +++ A+Y  + +   G   +  ++  L++ LCK+   +    +   ++   + PD   Y+
Sbjct: 178 EIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYT 237

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            ++    K+  +  A +++ EM+  G +P++ TY  ++   C  G + EA  ++  M   
Sbjct: 238 TIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLK 297

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P  + +++L+   G E +I++A+  F EM+   +  ++  Y +LI   CK +  +  
Sbjct: 298 NINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERA 357

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKM 383
             + K M  +G+ P+  +  I+L+ L   G  + A + F+ + +K    +  TY +MI  
Sbjct: 358 IALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMING 417

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
            C+ G       +   M+ K  +P   TF  +I  L +K     +   L +MI +G+
Sbjct: 418 LCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 108/210 (51%), Gaps = 4/210 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I     +   +  + L+N M+ K +  +V TF I++    +  K++EA+  F
Sbjct: 267 NVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLF 326

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M+   +  N+  +  L+  LCK+ ++ +A  +   MK++ I PD  +Y+ILL+   K 
Sbjct: 327 EEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 386

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A++ F+ ++  G + ++ TY +M++ LCKAG   + + +   M+   C P +  +
Sbjct: 387 GRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITF 446

Query: 274 SVLVHTYGVENRIEDAVDTFL-EMEKNGIL 302
             ++     E    D  + FL EM   G+L
Sbjct: 447 KTIICAL-FEKDENDKAEKFLREMIARGLL 475



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +F +  ++ +          +  F + + NG+  ++   N LI  FC        + V
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
             ++  +G  P++ T N ++ GL   GE   A     +++ +  + D  +Y  +I   C+
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCK 210

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            GE +   ++ + ++     P +  ++ +I+ LC    V D+C L  +MI KGI P+  T
Sbjct: 211 AGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFT 270

Query: 447 FGKL 450
           +  L
Sbjct: 271 YNTL 274


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 181/350 (51%), Gaps = 3/350 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++IE+  K+R++     ++  MR +   LN  T+ +++    R   VEEA     
Sbjct: 117 VYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKK 176

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            M+ YG+  +   +  L++ LCKS+   +A+ + D M      P+   Y+ L++G+ ++ 
Sbjct: 177 DMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREG 236

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N   A ++ +EMV  G  P+ +TY  +V  LCK G++D A  ++K M     RP +  Y+
Sbjct: 237 NADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 296

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++  +   +  +DA     EME  GI  +V  Y+ +I   C++ + +    +L++M +K
Sbjct: 297 LIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 356

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+ PN+     +++G    G    A  +F +M K+    D   Y  +I    + G +E++
Sbjct: 357 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 416

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            K +  M+ +  +P+  T+S LI+G    G +  +  L++ M++ G++P+
Sbjct: 417 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 466



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 38/397 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I  L K R+      L++ M    +  NV  +  ++  + R    +EA      M 
Sbjct: 190 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 249

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
             GV  N   ++ L+  LCK   + +A  +   M +D   PD+ TY++++EG  +  N  
Sbjct: 250 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKK 309

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  EM + G +P++ TY IM+  LC++G  ++A  +++ M +   +P +F+Y+ L+
Sbjct: 310 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  E  +  A + F +M K  +L D+  YN+LI    K  + +   +    M  +G+ 
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 429

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM------------IKLCEA------------- 372
           PN  T + +++G +  G+ + A ++ +RM            I L E+             
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 489

Query: 373 -----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                      D   Y ++I      G +E AF+V   ++    +P +H +S LI+GLC 
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
                 +  +L++M +KG+ P+   +  L   L K G
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 586



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 208/437 (47%), Gaps = 16/437 (3%)

Query: 45  SPKVVLDT---ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-----KQQNYEHS 96
           SP VVL +   AL  SG R SP +++ +++ ++ +G +       AE     + +    S
Sbjct: 27  SPPVVLASIHRALSDSGHR-SPAVLDVLVDTYKKSGRVQ----DAAEVVLMMRDRGLAPS 81

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +R  +++++ L +     ++W +   M    +  +V T+  ++  Y +V++ + A     
Sbjct: 82  IRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLV 141

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M++ G   N   +N L++ LC+S  V +A      M+D   +PD  TY  L+ G  K  
Sbjct: 142 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 201

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A+ +  EM      P++V Y  ++D   + G  DEA  ++K M +   +P    Y 
Sbjct: 202 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYD 261

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            LV       +++ A     +M ++    D   YN +I    + +  K+ +R+L +M + 
Sbjct: 262 NLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENA 321

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKA 393
           G++PN  T +I+++GL   GE ++A  +   M  K  + +A  Y  +I  +C+ G +  A
Sbjct: 322 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 381

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +++  M     +P ++ ++ LI GL   G V +S      M E+G+ P+  T+  L   
Sbjct: 382 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 441

Query: 454 LIKEGREDVLKFLQEKM 470
            +K G  +  + L ++M
Sbjct: 442 YLKNGDLESAEQLVQRM 458



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 181/364 (49%), Gaps = 11/364 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           +RAY S    LA I  ++ + D  +  R+  +L+V     ++  Y +  +V++A     +
Sbjct: 22  IRAYPSPPVVLASI--HRALSD--SGHRSPAVLDV-----LVDTYKKSGRVQDAAEVVLM 72

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M+  G+  ++   N LL  L ++  +    ++ + M    I PD  TYS L+E + K   
Sbjct: 73  MRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVRE 132

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+++  EM + GC  + VTY +++  LC++G V+EA G  K M+     P  F Y  
Sbjct: 133 FDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGA 192

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++      R  +A     EM    +  +V +Y  LI  F +       ++++K+M + G
Sbjct: 193 LINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG 252

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAF 394
           V PN  T + ++ GL   G+ D A  + ++M++     D  TY ++I+   +    + AF
Sbjct: 253 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAF 312

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           ++   M+     P+++T+S++I+GLC  G    +  LLE+M  KG++P+   +  L    
Sbjct: 313 RLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 372

Query: 455 IKEG 458
            +EG
Sbjct: 373 CREG 376



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 2/345 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+ I++    +  + E+A      M   G+  N   +  L+S  C+  NV  A EIF
Sbjct: 326 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 385

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M K   +PD   Y+ L+ G  K   +  + + F +M + G  P+  TY  ++    K 
Sbjct: 386 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 445

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++ A  +V+ M  T  +P   IY  L+ +Y   + IE    TF  M   G++ D  +Y
Sbjct: 446 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 505

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             LI     +   +  +RVL ++   G  P+    + +++GL    + ++A+ +   M K
Sbjct: 506 GILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSK 565

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              + +   Y  +I   C+ G++  A  V+  +  K  +P+  T++ LI+G C  G +S+
Sbjct: 566 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISN 625

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           +  L  +M+  GI P    +  L       G  +   FL E+M L
Sbjct: 626 AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFL 670



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 22/337 (6%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           ML+   + I++   +    +E A    + ++K G   ++  ++ L+S LCK+ +  KA  
Sbjct: 499 MLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFG 558

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           I D M  + + P+   Y+ L++G  K  ++  AR +F  ++  G  P+ VTY  ++D  C
Sbjct: 559 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC 618

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G +  A  +   M +T   P +F+YSVL         +E A+    EM   G  A ++
Sbjct: 619 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 677

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR- 365
            +N L+  FCK  K +   ++L  +  +G+ PN+ T   I++GL   G+  E + +F   
Sbjct: 678 SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 737

Query: 366 ------------------MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
                             MI   +   D    MI+  C+ G L+KA  +   +  K    
Sbjct: 738 QQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 797

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IRPS 443
              ++  +++ LC KG +S++  LL++M ++G ++P+
Sbjct: 798 GCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPT 834



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 160/362 (44%), Gaps = 2/362 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S+I  L+K+ + +        M+ + +L  E T+  ++  Y +   +E A      M 
Sbjct: 400 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
             G+  N   +  LL +  KS ++ K    F  M D+  + D++ Y IL+       N+ 
Sbjct: 460 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 519

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  E+   G  PD+  Y  ++  LCK    ++A GI+  M      P    Y+ L+
Sbjct: 520 AAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALI 579

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   I  A + F  +   G++ +   Y +LI   CK     N + +  +M + G+ 
Sbjct: 580 DGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGIT 639

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           P++   +++  G    G+ ++A  +   M     A   ++  ++  FC+ G++++  K+ 
Sbjct: 640 PDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLL 699

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             +  +  +P+  T   +I+GL + G +S+   +  ++ +K    +   F  L   +I +
Sbjct: 700 HVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQ 759

Query: 458 GR 459
           G+
Sbjct: 760 GK 761



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 1/173 (0%)

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           A+ + L+  + K+ + ++   V+  M  +G+AP+ R CN +L  L+        ++V   
Sbjct: 48  AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREF 107

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M+      D  TY+ +I+ +C+  E + A KV   M+ +    +  T++VLI GLC  G 
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           V ++    +DM + G+ P G T+G L   L K  R +  K L ++M+    +P
Sbjct: 168 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 220


>gi|413938524|gb|AFW73075.1| hypothetical protein ZEAMMB73_887223 [Zea mays]
          Length = 492

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 205/421 (48%), Gaps = 14/421 (3%)

Query: 50  LDTALDQSGIRVSPEIVEDVLE-KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA 108
           L+  LD++ IRVS   VE VL   + +    A  F     +   +EHS  +++ +++ L 
Sbjct: 61  LNAELDKADIRVSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILG 120

Query: 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           K R ++ MWD V +M+++++L++ TF  I    A        +  F  M +YG+T++  A
Sbjct: 121 KNRLFEPMWDTVKSMQSQQLLSLATFASIFSSLAATPG-GSPLKAFMDMPRYGMTRDTPA 179

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            N LLSALC++  +  A+      +      PD+ +Y+ILLEG     +L  ARE+F EM
Sbjct: 180 LNSLLSALCRANRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEM 239

Query: 227 VDT-GCNPD-IVTYGIMVDVLCKAGR---VDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           V   G  PD +  Y   +  L  +     + EA+  +  +    C P    +   +  + 
Sbjct: 240 VQAIGFYPDNVPAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHL 299

Query: 282 VENRIEDAVDTFLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              ++  A++ + + + + G++ D+ MYN +I         + +   L DM S GV P++
Sbjct: 300 DARQLRGAMNLWDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDT 359

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N++L  L+   +  EA  +F  M+K  C  +    ++ ++MF      E   KVW  
Sbjct: 360 NTYNVVLQLLLKGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCC 419

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL--IKE 457
           M      P     ++L+  L D  +  ++C   EDMI++GI+ S  T  KL++ L  IK+
Sbjct: 420 MVENGLPPLQECGNMLVAKLKDDRL-PEACKYAEDMIDRGIKLSSATLSKLKQRLQRIKK 478

Query: 458 G 458
           G
Sbjct: 479 G 479


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 166/334 (49%), Gaps = 4/334 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL   G R+       VL++  N    A  FF W ++Q  ++H    Y +M+ +L + 
Sbjct: 314 EEALHNFGFRMDAYQANQVLKQMDNYAN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 372

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           +Q+  +  L++ M R     N  T+  ++  Y R   ++EA+  FN MQ+ G   +   +
Sbjct: 373 KQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTY 432

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+    K+  +  A +++  M++  + PD+ TYS+++   GK  +LP A  +F EMV 
Sbjct: 433 CTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVG 492

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC P++VT+ IM+ +  KA   + AL + + M +   +P    YS+++   G    +E+
Sbjct: 493 QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEE 552

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM++   + D  +Y  L+  + KA      ++  + M   G+ PN  TCN +L+
Sbjct: 553 AEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLS 612

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
             +      EAY + + M+ L       TYT+++
Sbjct: 613 TFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 646



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 20/347 (5%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNV-MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           VE    I+R++      EEA++ F   M  Y   Q L   +   +AL            F
Sbjct: 297 VENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALG----------FF 346

Query: 190 DCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             +K +  F  D  TY+ ++   G+        ++  EMV  GC P+ VTY  ++    +
Sbjct: 347 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGR 406

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           A  + EA+ +   M    C P    Y  L+  +     ++ A+D +  M++ G+  D   
Sbjct: 407 ANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFT 466

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+ +I    KA      +R+  +M  +G  PN  T NI++         + A +++R M 
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 526

Query: 368 KLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
               + D  TY++++++    G LE+A  V+  M+ K ++P    + +L++     G V 
Sbjct: 527 NAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVD 586

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            +    + M++ G+RP+  T   L    ++  R      + E  NLL
Sbjct: 587 KAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHR------MSEAYNLL 627


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 167/348 (47%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I++L K +     + L + M  K +  +V T+  ++  +  V K++EA+   
Sbjct: 446 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLL 505

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           N M    +  ++  +  L+ AL K   V++A+ +   M    + PD  TY+ L+ G+   
Sbjct: 506 NEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLV 565

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + +A+ +F  M   G  PD+ TY I+++  CK+  VDEAL + K M      P +  Y
Sbjct: 566 YEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTY 625

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S LV       RI    D   EM   G  ADV  YN+LI   CK         +   M  
Sbjct: 626 SSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKD 685

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +G+ PN+ T  I+L+GL   G   +A  VF+ ++ K    D   Y +MI   C+ G LE+
Sbjct: 686 QGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEE 745

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           A  +   M+    IP+  TF ++IN L  K     +  LL  MI +G+
Sbjct: 746 ALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 193/385 (50%), Gaps = 7/385 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDL---VNAMRTKRMLNVETFCIIMRKYARVQKV 147
           Q ++ +  +Y ++I  + KI   +    L   ++   TK   NVE +  I+    + Q V
Sbjct: 406 QGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKP--NVEMYSTIIDALCKYQLV 463

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
            EA   F+ M   G++ ++  ++ L+   C    +++A  + + M  + I PD +TY+IL
Sbjct: 464 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTIL 523

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++  GK+  +  A+ +   M+     PD+ TY  +++       V +A  +  +M     
Sbjct: 524 VDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGV 583

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y++L++ +     +++A++ F EM +  ++ D   Y++L+   CK+ +   V+ 
Sbjct: 584 TPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWD 643

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           ++ +M  +G   +  T N +++GL   G  D+A  +F +M  +    +  T+T+++   C
Sbjct: 644 LIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLC 703

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +GG L+ A +V++ +  K +   ++ ++V+I G C +G++ ++  +L  M E G  P+  
Sbjct: 704 KGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAV 763

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           TF  +   L K+   D  + L  +M
Sbjct: 764 TFDIIINALFKKDENDKAEKLLRQM 788



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 179/363 (49%), Gaps = 14/363 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I++L K +     + L + M  K +  NV T+  ++  +  V K++EA+   
Sbjct: 132 NVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLL 191

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-----DCMKDRFIPDSKTYSILLEG 209
           NVM    +  N+  +N L+ ALCK   V++A+ +       C+K   I    TYS L++G
Sbjct: 192 NVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVI----TYSTLMDG 247

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR-P 268
           +     + +A+ +F  M   G  PD+ +Y IM++  CK  RVD+AL + K M   + R P
Sbjct: 248 YFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM--ILSRFP 305

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               ++ ++ ++        AV     +E  GI  D+   N LI  FC   +    + VL
Sbjct: 306 PIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVL 365

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
             +  +G  P++ T N ++ GL  +G+  +A     +++ +  + +  +Y  +I   C+ 
Sbjct: 366 AKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKI 425

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+   A K+ + +  +   P++  +S +I+ LC   +VS++  L  +M  KGI     T+
Sbjct: 426 GDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTY 485

Query: 448 GKL 450
             L
Sbjct: 486 STL 488



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 155/322 (48%), Gaps = 1/322 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +M  Y  V +V++A + FN M   GVT ++ ++N +++  CK K V KA  +F
Sbjct: 237 NVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLF 296

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
             M     P    ++ +L+ + K  +   A  +   +   G  PD+ T  I+++  C  G
Sbjct: 297 KEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMG 356

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           ++     ++  +      P++   + L+    ++ +++ A+    ++   G   +   Y 
Sbjct: 357 QITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYA 416

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IK 368
            LI   CK    +   ++L+ ++ +   PN    + I++ L       EAY +F  M +K
Sbjct: 417 TLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVK 476

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
              AD  TY+ +I  FC  G+L++A  +   M LK   P + T+++L++ L  +G V ++
Sbjct: 477 GISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEA 536

Query: 429 CVLLEDMIEKGIRPSGETFGKL 450
             +L  M++  ++P   T+  L
Sbjct: 537 KSVLAVMLKACVKPDVFTYNTL 558



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 143/324 (44%), Gaps = 3/324 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           LN  ++  ++    R+     A+     +       N+  +N ++ ALCK + V +A  +
Sbjct: 96  LNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGL 155

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M  + I  +  TYS L+ G+     L  A  +   MV    NP++ TY I+VD LCK
Sbjct: 156 FSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCK 215

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G+V EA  ++  M     +     YS L+  Y +   ++ A   F  M   G+  DV  
Sbjct: 216 EGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHS 275

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM- 366
           YN +I  FCK  +      + K+M      P  +  N IL+          A  +  R+ 
Sbjct: 276 YNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQF-NKILDSFAKMKHYSTAVSLSHRLE 334

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +K  + D  T  ++I  FC  G++   F V   +  + + PS  T + LI GLC KG V 
Sbjct: 335 LKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVK 394

Query: 427 DSCVLLEDMIEKGIRPSGETFGKL 450
            +    + ++ +G + +  ++  L
Sbjct: 395 KALHFHDKLLAQGFQLNQVSYATL 418



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 1/252 (0%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +K  + PD+ T + L++G      +  A     +++  G   + V+Y  +++ +C+ G  
Sbjct: 55  LKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDT 114

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A+  ++ +D  + +P   +Y+ ++        + +A   F EM   GI A+V  Y+ L
Sbjct: 115 RAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTL 174

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC- 370
           I  FC   K K    +L  M  K + PN  T NI+++ L   G+  EA  V   M+K C 
Sbjct: 175 IYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACV 234

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           +++  TY+ ++  +    E++KA  V+  M L    P +H+++++ING C    V  +  
Sbjct: 235 KSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALN 294

Query: 431 LLEDMIEKGIRP 442
           L ++MI     P
Sbjct: 295 LFKEMILSRFPP 306



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 102/214 (47%), Gaps = 35/214 (16%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
           Q+N       Y S+++ L K  +   +WDL++ MR +                       
Sbjct: 615 QKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR----------------------- 651

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
                      G   ++  +N L+  LCK+ ++ KA  +F+ MKD+ I P++ T++ILL+
Sbjct: 652 -----------GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLD 700

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   L  A+E+F++++  G + D+  Y +M+   CK G ++EAL ++  M+   C P
Sbjct: 701 GLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIP 760

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
            +  + ++++    ++  + A     +M   G+L
Sbjct: 761 NAVTFDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 91/184 (49%), Gaps = 1/184 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +   + L+    ++ ++++A+    ++   G   +   Y  LI   C+    +   + 
Sbjct: 61  PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKF 120

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQ 386
           L+ ++ +   PN    N I++ L       EAY +F  M +K   A+  TY+ +I  FC 
Sbjct: 121 LRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCI 180

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+L++A  +   M LK   P++ T+++L++ LC +G V ++  +L  M++  ++ +  T
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVIT 240

Query: 447 FGKL 450
           +  L
Sbjct: 241 YSTL 244



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 286 IEDAVD--TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           ++DAV      ++ K G   D    N LI   C   + K        + ++G   N  + 
Sbjct: 42  VDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSY 101

Query: 344 NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             ++NG+   G+T  A +  R++  +L + + + Y  +I   C+   + +A+ ++  M +
Sbjct: 102 ATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTV 161

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           K    ++ T+S LI G C  G + ++  LL  M+ K I P+  T+  L   L KEG+
Sbjct: 162 KGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGK 218


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 185/395 (46%), Gaps = 10/395 (2%)

Query: 66  VED---VLEKFRNAGTLAF---CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           VED   +L++F N  +L     CF     KQ       +   +MI +L ++ +  +   L
Sbjct: 176 VEDYIYMLKEFGNTRSLLHAKKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGL 235

Query: 120 VNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
               R +     V +F  ++  + R  +  +AV  F  M  +GV  N+  +N ++ A  K
Sbjct: 236 FERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAK 295

Query: 179 SK-NVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
            + +     + +D M  +  +PD  TY+ LL           A+++  EM      PD+ 
Sbjct: 296 GEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVF 355

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY   +D LCKAG++D A  + + M S    P    YS ++  Y   N +EDA++ + EM
Sbjct: 356 TYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEM 415

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
           +   +  D   YN L+G + K           K+M   G+  +  T N +L+G    G  
Sbjct: 416 KLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMY 475

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           DE  R+F  M  +    +  TY+ MI M+ +G   ++A  V++  K+ R    +  +S +
Sbjct: 476 DEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAI 535

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           I+ LC  G++  S +LL  M+EKGI+P+  TF  +
Sbjct: 536 IDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSI 570



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 119/252 (47%), Gaps = 2/252 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S++   A    +++   L++ M  + ++ +V T+   +    +  +++ A   F  M 
Sbjct: 322 YNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMS 381

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
              V  N+  ++ ++    K+  +  A  +++ MK R +  D  +Y+ L+  + K  NL 
Sbjct: 382 SKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLD 441

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E  +EM  +G N D+VTY  ++    K G  DE   + + M +    P +  YS ++
Sbjct: 442 EAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMI 501

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y      ++A+D + E +   +  DV  Y+A+I   CK    ++   +L  M  KG+ 
Sbjct: 502 DMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIK 561

Query: 338 PNSRTCNIILNG 349
           PN  T N I++ 
Sbjct: 562 PNVVTFNSIIDA 573



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 158/346 (45%), Gaps = 20/346 (5%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++ +++L K  Q  +   +   M +KR+  NV T+  +M  YA+   +E+A+  + 
Sbjct: 354 VFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYE 413

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDP 214
            M+   V  +  ++N L+    K  N+ +A E    M+   I  D  TY+ LL G+GK  
Sbjct: 414 EMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHG 473

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                R +F EM      P+ +TY  M+D+  K     EA+ + +             YS
Sbjct: 474 MYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYS 533

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++ T      +E ++   + M + GI  +V  +N++I A  ++   +  Y V  + +S 
Sbjct: 534 AIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE--YGV--NGSSD 589

Query: 335 GV-APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
            +  P  ++  I+++G       ++      R++K+ E  A      +K   + G  +K 
Sbjct: 590 AIDYPIEQSSPIVIDGAFQNKPGED------RILKMFEQLAAEKAGHLKK-NRSGRQDKH 642

Query: 394 FKVWKYMKLKRF--IPSMHTFSVLING--LCDKGIVSDSCVLLEDM 435
             +W + K+      P++ TFS ++N   LC+     D+ +LL+ +
Sbjct: 643 CILWLFQKMHELNIKPNVVTFSAILNACSLCNS--YEDASLLLDTL 686



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 9/306 (2%)

Query: 172 LLSALCKSKNVRKAQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           +L     ++++  A++ FD +   ++  +   K  S ++   G+   +  A  +F     
Sbjct: 182 MLKEFGNTRSLLHAKKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARL 241

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE- 287
            G    + ++  M+    + GR  +A+ + +SM S    P    Y+ ++   G +  +  
Sbjct: 242 EGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDA-GAKGEVSF 300

Query: 288 DAVDTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           D V  F  EM  NG++ D   YN+L+        ++   ++L +M+ + + P+  T N  
Sbjct: 301 DVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTY 360

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           L+ L   G+ D A RVF  M  K    +  TY+ M+  + +   LE A  +++ MKL+  
Sbjct: 361 LDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSV 420

Query: 406 IPSMHTFSVLINGLCDK-GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
                +++ L+ G+ +K G + ++    ++M   GI     T+  L     K G  D ++
Sbjct: 421 CLDRVSYNTLV-GIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVR 479

Query: 465 FLQEKM 470
            L E+M
Sbjct: 480 RLFEEM 485


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 215/468 (45%), Gaps = 31/468 (6%)

Query: 24  SSEPSTEALD--AAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAF 81
           SS PS  + D  AA +++  +L SP    +++L      +SP +   V+   R+   +  
Sbjct: 29  SSRPSQFSSDQVAAHNVAS-LLKSPNWEKNSSLKSLVSHMSPNVASQVISLQRSDNDICV 87

Query: 82  CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-----RTKR--------- 127
            FF W  K  +Y       + +++ +     +++  D++ A+     R ++         
Sbjct: 88  RFFMWVCKHSSYCFDPTQKNQLLKLIVSSGLFRVAHDVIVALIRECSRCEKEMLKLISCF 147

Query: 128 ---------MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
                     LN   +  ++   A++     A  T+  M+  G    +  +  +++ALCK
Sbjct: 148 DELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCK 207

Query: 179 SKNVRKAQEIFDC--MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDI 235
           +    +A E+F C  +K  F+ DS   + LL G+ +  NL  A ++F  M   G C P+ 
Sbjct: 208 N-GYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNS 266

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           V+Y I++  LC+ GR++EA G+   M    C+P++  Y+VL+        I+ A + F E
Sbjct: 267 VSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDE 326

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M   G   +V  Y  LI   C+  K +    V + M   G+ P+  T N ++NG    G 
Sbjct: 327 MIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGR 386

Query: 356 TDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
              A+ +   M K  C+ +  T+  +++  C+ G+  KA  + K M      P + +++V
Sbjct: 387 VVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNV 446

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           LI+GLC +G ++ +  LL  M    + P   TF  +     K+G+ DV
Sbjct: 447 LIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADV 494



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 181/410 (44%), Gaps = 73/410 (17%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           ++  + S R Y  +I++L         ++L + M  +    NV T+ +++    R  K+E
Sbjct: 294 EKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIE 353

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           EA      M K G+  ++  +N L++  CK   V  A E+   M+ R   P+ +T++ L+
Sbjct: 354 EANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELM 413

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           EG  +     +A  + + M+D G +PDIV+Y +++D LC+ G ++ A  ++ SM+S    
Sbjct: 414 EGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLE 473

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P                                   D   + A+I AFCK  K       
Sbjct: 474 P-----------------------------------DCLTFTAIINAFCKQGKADVASAF 498

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------------ 369
           L  M  KG++ +  T   +++G+   G+T +A  +   ++K+                  
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSK 558

Query: 370 -CEADAD-----------------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            C+   +                 TYT ++    + G++  +F++ + MKL   +P+++ 
Sbjct: 559 GCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYP 618

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           ++++INGLC  G V ++  LL  M + G+ P+  T+  + K  +  G+ D
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLD 668



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 170/374 (45%), Gaps = 8/374 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y+++I    K  +    ++L+  M  +    NV TF  +M    RV K  +AV+  
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLL 429

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKD 213
             M   G++ ++ ++N L+  LC+  ++  A ++   M      PD  T++ ++  + K 
Sbjct: 430 KRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQ 489

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A      M+  G + D VT   ++D +C  G+  +AL I++++       T    
Sbjct: 490 GKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSL 549

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +V++       ++++ +    ++ K G++  V  Y  L+    ++      +R+L+ M  
Sbjct: 550 NVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKL 609

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            G  PN     II+NGL   G  +EA ++   M       +  TYT+M+K +   G+L++
Sbjct: 610 SGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDR 669

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLING--LCDKGIVSDSCVLLEDMIEKGIRPSGETFGK- 449
           A +  + M  + +  +   +S L+ G  L  KGI       ++++I    +  G T G  
Sbjct: 670 ALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLC 729

Query: 450 --LRKLLIKEGRED 461
             L   L KEGR D
Sbjct: 730 IFLVTRLCKEGRTD 743



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/373 (18%), Positives = 156/373 (41%), Gaps = 50/373 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           + +Y+ +I+ L +     + + L+ +M +  +  +  TF  I+  + +  K + A     
Sbjct: 441 IVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLG 500

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM----------------------- 192
           +M + G++ +      L+  +C     R A  I + +                       
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGC 560

Query: 193 -------------KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                        K   +P   TY+ L++G  +  ++  +  +   M  +GC P++  Y 
Sbjct: 561 KLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYT 620

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           I+++ LC+ GRV+EA  ++ +M  +   P    Y+V+V  Y    +++ A++T   M + 
Sbjct: 621 IIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680

Query: 300 GILADVAMYNALIGAFCKANK---------FKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           G   +  +Y++L+  F  + K          K +  V++ +        S  C  ++  L
Sbjct: 681 GYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLG----GSTSGLCIFLVTRL 736

Query: 351 IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
              G TDE+  + + ++K          ++++ +C   +  K  ++   +    F+PS  
Sbjct: 737 CKEGRTDESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFK 796

Query: 411 TFSVLINGLCDKG 423
           +F ++I GL  +G
Sbjct: 797 SFCLVIQGLKKEG 809



 Score = 38.5 bits (88), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           A + ++ + C  K   K  E+    +K  F+P  K++ ++++G  K+ +  RARE+  E+
Sbjct: 762 AIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMEL 821

Query: 227 VDTGCNPDIVTYGIM--VDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + +  N  +   G++  V+ L + G   E + +V  + S   RPT
Sbjct: 822 LTS--NGVVEKSGVLPYVECLMETGDCSEVIDLVDQLHSRE-RPT 863


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 172/354 (48%), Gaps = 3/354 (0%)

Query: 121 NAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           + MR + +      C  ++   AR +    A   FN M + GV  N   +N +L    K+
Sbjct: 135 DQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAMLHVCLKA 194

Query: 180 KNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
           ++  +A+ +   M    +P D  +++ ++  + +      A  +   M D G  PDIVT+
Sbjct: 195 RDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTW 254

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++  LCK GR+ EA  +   M +    P +  Y+ LV  Y     + +AV    EME 
Sbjct: 255 NTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEMEA 314

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G++  VA YNA+I   C+  K K V  +L +M+ + V  +  TCN ++N    RG+   
Sbjct: 315 GGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTS 374

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A +V +RM++   + D  TY  +I  FC+  EL++A +    M  + F P+   FS L++
Sbjct: 375 ACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVD 434

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           G C K       ++ +++I++G+ P    +  L + L K+G  D+ + +  +M 
Sbjct: 435 GFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQ 488



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 140/308 (45%), Gaps = 2/308 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDC 191
           +F  ++  Y R     EA+     MQ  GV  ++  +N ++  LCK   +++A ++  D 
Sbjct: 218 SFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDM 277

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +     PD+ TY+ L++G+ +  ++  A ++  EM   G  P + TY  ++  LC+ G++
Sbjct: 278 IAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKM 337

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            E  G++  MD    +      + L+++Y     +  A      M ++G+  D   Y AL
Sbjct: 338 KEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKAL 397

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  FCKA +       L +M  +G +PN    + +++G   +  TD    +   +IK   
Sbjct: 398 IHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGL 457

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D   Y  +I+  C+ G ++ A KV   M+ K        ++ L       G V+ +  
Sbjct: 458 PPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASD 517

Query: 431 LLEDMIEK 438
           +L +M  K
Sbjct: 518 ILNEMARK 525



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 12/278 (4%)

Query: 172 LLSALCKSKNVRK--AQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           LL AL  S + R   A  +FD M+ R   PD+   + LL    +      A ++F EM  
Sbjct: 115 LLLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGR 174

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G   +   Y  M+ V  KA     A G++  MD+       F ++ ++  Y  +    +
Sbjct: 175 AGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYE 234

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+     M+  G+  D+  +N +I   CK  + K   ++  DM +  V P++ T   +++
Sbjct: 235 AMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVD 294

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADA-----DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           G    G+  EA ++   M    EA        TY  +I+  C+ G++++   +   M  +
Sbjct: 295 GYCRIGDVGEAVKLREEM----EAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGR 350

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           +      T + LIN    +G ++ +C + + M+E G++
Sbjct: 351 KVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQ 388



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 2/233 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFN 155
           V  Y+++I  L +  + + +  L++ M  +++      C  ++  YA+   +  A     
Sbjct: 321 VATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKK 380

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M + G+  +   +  L+   CK+K + +A+E +F+ M   F P+   +S L++G+ K  
Sbjct: 381 RMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKN 440

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N      I  E++  G  PD   Y  ++  LCK G VD A  ++  M          +Y+
Sbjct: 441 NTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYA 500

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
            L + +    ++  A D   EM +  +     +YN L  ++       N++ V
Sbjct: 501 TLAYAHLTAGKVAAASDILNEMARKQMSVTPQIYNCLCTSYGDEKATLNMFWV 553



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 1/240 (0%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P + ++ ++      + R  +A  +   M +    P +   + L+           A   
Sbjct: 109 PHVPSWLLLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKV 168

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F EM + G+  +  +YNA++    KA        ++  M++ GV  +  + N ++   + 
Sbjct: 169 FNEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVR 228

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           +G   EA  V  RM  +  E D  T+  +I   C+ G +++A ++   M      P   T
Sbjct: 229 KGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVT 288

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           ++ L++G C  G V ++  L E+M   G+ P   T+  + + L ++G+   +  L  +M+
Sbjct: 289 YTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMD 348



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 38/249 (15%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y R+  V EAV     M+  G+   +A +N ++  LC+   +++   +   M
Sbjct: 288 TYTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEM 347

Query: 193 KDRFIP------------------------------------DSKTYSILLEGWGKDPNL 216
             R +                                     D  TY  L+ G+ K   L
Sbjct: 348 DGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKEL 407

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+E   EM+  G +P+   +  +VD  CK    D  L I   +      P   +Y  L
Sbjct: 408 DEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSL 467

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK-- 334
           +     +  ++ A     +M+  G+  D  +Y  L  A   A K      +L +M  K  
Sbjct: 468 IRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASDILNEMARKQM 527

Query: 335 GVAPNSRTC 343
            V P    C
Sbjct: 528 SVTPQIYNC 536



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMI 381
           +  RV   M ++G+AP++  C  +L  L     T  A++VF  M +   A +   Y  M+
Sbjct: 129 DAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAML 188

Query: 382 KMFCQGGELEKAFKVWKYM-----KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
            +  +  +  +A  +   M      L RF     +F+ +I     KG+  ++  + E M 
Sbjct: 189 HVCLKARDALRAEGLMTRMDAAGVPLDRF-----SFNTVIALYVRKGMQYEAMCVRERMQ 243

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           ++G+ P   T+  +   L KEGR      L+  M     EP
Sbjct: 244 DEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEP 284


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 195/432 (45%), Gaps = 49/432 (11%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLA----KIRQYQIMWD-LVNAMRTKRMLNVETFCII 137
           FF+WA+ +  ++H+    +S++E           Y++  D LV   R        T+  +
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDF----TYGTL 58

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM----- 192
           +R + + +++ +AV     M+  G+T  +  F  L+  LC+     KA +IF  M     
Sbjct: 59  IRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKV 118

Query: 193 -KDRF------------------------------IPDSKTYSILLEGWGKDPNLPRARE 221
             D F                              +PD  TY++L+    K     +  +
Sbjct: 119 KPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQ 178

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           IF EM+  G +P++VTY  +V+  CKAGR+D+AL +++ +  T   P+  +YS L+    
Sbjct: 179 IFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLC 238

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             +R ++A + F EM   G + DV +Y + I   CKA K      V   M   G AP+  
Sbjct: 239 KHDRHDEARELF-EMAA-GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPV 296

Query: 342 TCNIILNGLIGRGETDEAYRVF-RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           + N+I+  L       EA  +  + M + C       T+++   C+   +E+A  + + M
Sbjct: 297 SYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERM 356

Query: 401 -KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +     PS+ T+S +I+GLC    + D+ V+L+ M   G  P   T+  +     K GR
Sbjct: 357 LETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGR 416

Query: 460 EDVLKFLQEKMN 471
            D  + L ++M+
Sbjct: 417 LDEARELFQRMH 428



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 168/343 (48%), Gaps = 5/343 (1%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++    +  K E+    F  M   G +  L  +  +++  CK+  + +A  +   +
Sbjct: 159 TYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRL 218

Query: 193 KDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K     P    YS L++G  K      ARE+F EM   G   D++ Y   +  LCKAG++
Sbjct: 219 KGTGRSPSGSLYSTLIDGLCKHDRHDEARELF-EMA-AGDVQDVIVYTSFISGLCKAGKL 276

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           DEA  +   M    C P    Y+V++++   +NR+ +A +   +  +   +  V +   L
Sbjct: 277 DEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVL 336

Query: 312 IGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           +   CK+ + +    +L+ M   G  AP+  T + +++GL      D+AY V ++M +  
Sbjct: 337 VDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAG 396

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
           C  D  TYT +I  FC+ G L++A ++++ M  +     +  +++LI G C    V ++ 
Sbjct: 397 CVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAI 456

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
            ++E+M  +GI+P+  +   +   L KE R +  + L EKMN 
Sbjct: 457 AMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMNF 499



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 135/269 (50%), Gaps = 3/269 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           Y ++I+ L K  ++    +L   M    + +V  +   +    +  K++EA      M +
Sbjct: 230 YSTLIDGLCKHDRHDEARELFE-MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIE 288

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPR 218
            G   +  ++N ++ +LCK   V +A+E+ D  M+ + +P     ++L++G  K   +  
Sbjct: 289 AGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEE 348

Query: 219 AREIFREMVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           A  I   M++TG   P +VTY  ++D LCKA R+D+A  +++ M    C P    Y+ ++
Sbjct: 349 ACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAII 408

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +    R+++A + F  M + G   DV  YN LI  +C+A K      ++++M  +G+ 
Sbjct: 409 DAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQ 468

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           PN  + + I++GL      +EA  +  +M
Sbjct: 469 PNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI  FCKA +      +L +M + G+ P   T   ++  L     TD+A ++F +MI
Sbjct: 55  YGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMI 114

Query: 368 KL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            +  + DA  YT++I   C+  +L+ A   ++ M     +P   T++VL++ L       
Sbjct: 115 DMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWE 174

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
               + E+M+ KG  P   T+  +     K GR D    L  ++    + P
Sbjct: 175 QGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSP 225



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR- 127
           VL+K R AG +                 V  Y ++I++  K+ +     +L   M  +  
Sbjct: 388 VLQKMRRAGCVP---------------DVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 432

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
            L+V  + I++R Y R  KV+EA+     M   G+  N+ + + ++  LCK   V +A+ 
Sbjct: 433 ALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARL 492

Query: 188 IFDCMKDRFIPDSKTYS 204
           + + M    +PDS   S
Sbjct: 493 LMEKMNFESLPDSDPVS 509


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 179/362 (49%), Gaps = 11/362 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y++ IE   K      + +++  M  + +  NV T+ +++  ++ + K+EEA   F
Sbjct: 263 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 322

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M++ G+  ++  +  ++S  C+S NV++A  +FD M D+  IP + TY  L+ G  K 
Sbjct: 323 EEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKA 382

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A+ +  EM   G + + V +  ++D  C++G VDEAL +   M+        F Y
Sbjct: 383 GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAY 442

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + +       NR ++A      M + G+  +   +  LI  +CK   F    RV ++M  
Sbjct: 443 NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 502

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRV-----FRRMIKLCEADADTYTMMIKMFCQGG 388
           KG  PN  T N++++G   RG   EA+++      R +I     D  T T +I   C  G
Sbjct: 503 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLI----PDVYTCTSLIHGECIDG 558

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++ A K++  M  +  +P++ T++ +I+GL   G   ++  L ++M E G+ P    + 
Sbjct: 559 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYS 618

Query: 449 KL 450
            L
Sbjct: 619 SL 620



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 170/342 (49%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+   +  Y +   +        +M+K GV  N+  +  L+        + +AQ +F
Sbjct: 263 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 322

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+++ I  D   Y+ ++    +  N+ RA  +F EM D G  P   TYG ++  +CKA
Sbjct: 323 EEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKA 382

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+++ A  +V  M          I++ L+  Y     +++A+   + MEK G+ +DV  Y
Sbjct: 383 GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAY 442

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N++    CK N+      +L  M  +GV+PN+ +   +++     G   EA RVFR M +
Sbjct: 443 NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 502

Query: 369 LCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                +  TY ++I  + + G +++A K+   ++ +  IP ++T + LI+G C  G V  
Sbjct: 503 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 562

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  L ++M ++G+ P+  T+  +   L K+GR E+  K   E
Sbjct: 563 ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDE 604



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 136/263 (51%), Gaps = 2/263 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S   Y ++I  + K  Q +    LVN M+ K + LN   F  ++  Y     V+EA+   
Sbjct: 368 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 427

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            VM+K G+  ++ A+N + S LCK     +A+ +   M +R + P++ +++ L++ + K+
Sbjct: 428 VVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKE 487

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A+ +FREM + G  P+I+TY +++D   K G + EA  +   +++    P  +  
Sbjct: 488 GNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTC 547

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H   ++ +++ A+  F EM + G++ +V  Y A+I    K  + +  +++  +M  
Sbjct: 548 TSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKE 607

Query: 334 KGVAPNSRTCNIILNGLIGRGET 356
            G+ P+    + ++  L    E+
Sbjct: 608 TGLTPDDTVYSSLVGSLHSADES 630



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 176/427 (41%), Gaps = 41/427 (9%)

Query: 17  SFLRRYNSSEPSTEA-LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRN 75
           S L++  SS PS +   + A  ISK ++SS    L T        ++ + V  +L     
Sbjct: 12  SNLKKAFSSNPSLKLNQEIAGKISKTLVSSGAKSLQTTPSLLS-SLNSQTVHLILSNHIL 70

Query: 76  AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135
                  FF +  K   Y+  +RAY ++I  L + R+                       
Sbjct: 71  TAESCLDFFHFIRKNY-YKPDLRAYITLIFKLYRSRKSD--------------------- 108

Query: 136 IIMRKYARVQKVEEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
               K  + QK  E  + FN      G+   +     L+   C      +A+      K+
Sbjct: 109 ----KLHKSQKFAEIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCNRAK-----FKE 159

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           +F      + +L   +  +     A E F  M   G + D  +  + +  L + G+VD  
Sbjct: 160 KF------FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSC 213

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           L   + M +     T +  ++++        +E       E+   G+ A+V  YNA I  
Sbjct: 214 LRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEG 273

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
           + K      V  +L  M  +GVA N  T  ++++G    G+ +EA R+F  M  K  EAD
Sbjct: 274 YFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 333

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              YT +I   C+ G +++A  ++  M  K  IPS HT+  LI+G+C  G +  + +L+ 
Sbjct: 334 VYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVN 393

Query: 434 DMIEKGI 440
           +M  KGI
Sbjct: 394 EMQGKGI 400



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 144/318 (45%), Gaps = 3/318 (0%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKI 110
           T +++ G+  +      ++  F N G +      + E +++  E  V  Y S+I    + 
Sbjct: 288 TLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 347

Query: 111 RQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
              +    L + M  K ++ +  T+  ++    +  ++E A    N MQ  G+  N   F
Sbjct: 348 GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 407

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N L+   C+S  V +A  +   M+ + +  D   Y+ +  G  K      A+ +   MV+
Sbjct: 408 NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVE 467

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P+ +++  ++D+ CK G   EA  + + M+     P    Y+VL+  Y     +++
Sbjct: 468 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKE 527

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     E+E  G++ DV    +LI   C   K     ++  +M  +G+ PN  T   +++
Sbjct: 528 AHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 587

Query: 349 GLIGRGETDEAYRVFRRM 366
           GL   G ++EA++++  M
Sbjct: 588 GLSKDGRSEEAFKLYDEM 605


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 189/378 (50%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ ++  L +  +      L++ M +  ML +  T+ I+     R  + +  +  F
Sbjct: 263 NVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLF 322

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
               K GV       + LL+ LCK   V KA+++F+ +     +P +  Y+ L+ G+ + 
Sbjct: 323 AESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A  IF +M      PD +TY  +++ LCK   V +A  +V  M+ +   P+   +
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 442

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  YG   ++E       +M++ GI +DV  + +++ AFCK  K      +L DM  
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIY 502

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           K VAPN++  N I++  I  G+T++A  +  +M      A   TY +++K  C+  ++++
Sbjct: 503 KDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDE 562

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   ++ +   P + +++ +I+  C+KG    +  LL++M + GIRP+  T   L  
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVS 622

Query: 453 LLIKEGREDVLKFLQEKM 470
            L   GR   ++ L ++M
Sbjct: 623 ALASAGRVHDMECLYQQM 640



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 4/373 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y++MI+   K    +  + L + M       NV T+ +++    R  +++E     + M 
Sbjct: 232 YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMA 291

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            + +  +   ++ L   L ++   +    +F + +K   +  + T SILL G  KD  + 
Sbjct: 292 SHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 351

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A+++F  +V TG  P  V Y  +++  C+   +  A  I + M S   RP    Y+ L+
Sbjct: 352 KAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALI 411

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +       +  A D  +EMEK+G+   V  +N LI A+  A + +  + VL DM  KG+ 
Sbjct: 412 NGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIK 471

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
            +  +   ++      G+  EA  +   MI K    +A  Y  +I  + + G+ E+A  +
Sbjct: 472 SDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLL 531

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + MK      S+ T+++L+ GLC    + ++  L+  +  +G+RP   ++  +      
Sbjct: 532 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 591

Query: 457 EGRED-VLKFLQE 468
           +G  D  L+ LQE
Sbjct: 592 KGDTDKALELLQE 604



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 151/340 (44%), Gaps = 37/340 (10%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREM 226
           ++N +++ L +S     A ++FD M D  + P+  TY+ +++G  K  +L     +  +M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQM 255

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL---------- 276
           +  G  P++VTY +++  LC+ GR+DE   ++  M S    P  F YS+L          
Sbjct: 256 LHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGES 315

Query: 277 ------------------VHTYGV-------ENRIEDAVDTFLEMEKNGILADVAMYNAL 311
                              +T  +       + ++  A   F  +   G++    +YN L
Sbjct: 316 QTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTL 375

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  +C+    +  + + + M S+ + P+  T N ++NGL       +A  +   M K   
Sbjct: 376 INGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV 435

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           +   +T+  +I  +   G+LEK F V   M+ K     + +F  ++   C  G + ++  
Sbjct: 436 DPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVA 495

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +L+DMI K + P+ + +  +    I+ G  +    L EKM
Sbjct: 496 ILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKM 535



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 1/254 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ +Y++++ G  +      A ++F EMVD G  P+ +TY  M+D   K G ++    +
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M     +P    Y+VL+       R+++      EM  + +L D   Y+ L     +
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT- 376
             + + +  +  +   KGV   + TC+I+LNGL   G+  +A +VF  ++          
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I  +CQ  +L  AF +++ MK +   P   T++ LINGLC   +V+ +  L+ +M 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 437 EKGIRPSGETFGKL 450
           + G+ PS ETF  L
Sbjct: 432 KSGVDPSVETFNTL 445



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 141/309 (45%), Gaps = 41/309 (13%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           AFC F+  + +      +  Y+++I  L K+       DLV  M    +  +VETF  ++
Sbjct: 388 AFCIFEQMKSRHIRPDHI-TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRF 196
             Y    ++E+     + MQ+ G+  ++ +F  ++ A CK+  + +A  I D M  KD  
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD-V 505

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+++ Y+ +++ + +  +  +A  +  +M ++G +  IVTY +++  LC++ ++DEA  
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA-- 563

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
                          IY+                     +   G+  DV  YN +I A C
Sbjct: 564 ------------EELIYT---------------------LRNQGLRPDVVSYNTIISACC 590

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
                     +L++MN  G+ P  RTC+ +++ L   G   +   ++++M+ K  E  + 
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSS 650

Query: 376 TYTMMIKMF 384
            Y +M+  +
Sbjct: 651 IYGIMVDAY 659



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQ 112
           +++SG+  S E    +++ +  AG L  CF   ++ QQ   +  V ++ S++++  K  +
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 489

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                 +++ M  K +  N + +  I+  Y      E+A+     M+  GV+ ++  +N 
Sbjct: 490 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNL 549

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LL  LC+S  + +A+E+   ++++ + PD  +Y+ ++       +  +A E+ +EM   G
Sbjct: 550 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
             P + T   +V  L  AGRV +   + + M      P+S IY ++V  Y
Sbjct: 610 IRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 5/204 (2%)

Query: 265 VCRPTSFIYS--VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           VC P   + S  +L+ +     R  D    F  +   G   D   +N ++ A   A    
Sbjct: 115 VCSPLPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLD 174

Query: 323 NVYRVLKDMN-SKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTM 379
               +L+ M  S+G  P ++ + N+++ GL   G+  +A +VF  M+ +  A +  TY  
Sbjct: 175 VALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNT 234

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           MI    +GG+LE  F++   M      P++ T++VL++GLC  G + ++  L+++M    
Sbjct: 235 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHS 294

Query: 440 IRPSGETFGKLRKLLIKEGREDVL 463
           + P G T+  L   L + G    +
Sbjct: 295 MLPDGFTYSILFDGLTRTGESQTM 318


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 178/358 (49%), Gaps = 3/358 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ ++AK+ ++ ++      M    +  N+ T+ I++  + R  ++  A+   
Sbjct: 77  SIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALL 136

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M K G   ++   N LL+  C    +  A  + D M +  + PD+ T++ L+ G    
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLH 196

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A  +   MV  GC PD+VTYG +V+ LCK G  D AL ++  M++        IY
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++ +       +DA++ F EME  G+  +V  Y++LI   C   ++ +  R+L DM  
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEK 392
           + + PN  T + +++  + +G+  +A +++  MIK   + +  TY+ +I  FC    L +
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGE 376

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A ++ + M  K  +P++ T++ LING C    V     L  +M ++G+  +  T+  L
Sbjct: 377 AKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTL 434



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 150/303 (49%), Gaps = 3/303 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+  +  +  Y +++  L K     +  +L+N M   ++  NV  +  ++    + +  +
Sbjct: 211 QRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHED 270

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+  F  M+  GV  N+  ++ L+S LC       A  +   M +R I P+  T+S L+
Sbjct: 271 DALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALI 330

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           + + K   L +A +++ EM+    +P+I TY  +++  C   R+ EA  +++ M    C 
Sbjct: 331 DAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL 390

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y+ L++ +    R++  ++ F EM + G++ +   Y  LI  F +A    N   V
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 450

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
            K M S GV PN  T NI+L+GL   G+  +A  VF  + +   E D  TY +MI+  C+
Sbjct: 451 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510

Query: 387 GGE 389
            G+
Sbjct: 511 AGK 513



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 143/276 (51%), Gaps = 2/276 (0%)

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+   N M+   +  N+  ++ ++ +LCK ++   A  +F  M+++ + P+  TYS L+ 
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
                     A  +  +M++   NP++VT+  ++D   K G++ +A  + + M      P
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             F YS L++ + + +R+ +A      M +   L +V  YN LI  FCKA +      + 
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELF 416

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
           ++M+ +G+  N+ T   +++G     + D A  VF++M+ +    +  TY +++   C+ 
Sbjct: 417 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           G+L KA  V++Y++     P ++T++++I G+C  G
Sbjct: 477 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 1/279 (0%)

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           + R  P    +S LL    K            +M   G + ++ TY I+++  C+  R+ 
Sbjct: 71  QSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLS 130

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            AL ++  M      P     + L++ +   NRI DAV    +M + G   D   +  LI
Sbjct: 131 LALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLI 190

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
                 NK      ++  M  +G  P+  T   ++NGL  RG+TD A  +  +M     E
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIE 250

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
           A+   Y+ +I   C+    + A  ++  M+ K   P++ T+S LI+ LC+ G  SD+  L
Sbjct: 251 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRL 310

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L DMIE+ I P+  TF  L    +K+G+    + L E+M
Sbjct: 311 LSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEM 349



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 116/266 (43%), Gaps = 37/266 (13%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E +V  Y ++I+SL K R      +L   M  K +  NV T+  ++       +  +A  
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             + M +  +  NL  F+ L+ A  K   + KA+++++ M  R I P+  TYS L+ G+ 
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFC 369

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               L  A+++   M+   C P++VTY  +++  CKA RVD+ + + + M        + 
Sbjct: 370 MLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTV 429

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEME-------------------KNGILA--------- 303
            Y+ L+H +      ++A   F +M                    KNG LA         
Sbjct: 430 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489

Query: 304 -------DVAMYNALIGAFCKANKFK 322
                  D+  YN +I   CKA K+K
Sbjct: 490 QRSTMEPDIYTYNIMIEGMCKAGKWK 515



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 1/261 (0%)

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           S  Y  +L     D  L  A  +F  M  +   P I+ +  ++  + K  + D  +   +
Sbjct: 43  SYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGE 102

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M+        + Y++L++ +   +R+  A+    +M K G   D+   N+L+  FC  N
Sbjct: 103 KMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGN 162

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
           +  +   ++  M   G  P++ T   +++GL    +  EA  +  RM++  C+ D  TY 
Sbjct: 163 RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYG 222

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++   C+ G+ + A  +   M+  +   ++  +S +I+ LC      D+  L  +M  K
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282

Query: 439 GIRPSGETFGKLRKLLIKEGR 459
           G+RP+  T+  L   L   GR
Sbjct: 283 GVRPNVITYSSLISCLCNYGR 303



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 1/203 (0%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           TS+ Y  ++ T   +  ++DA+  F  M ++     +  ++ L+ A  K NKF  V    
Sbjct: 42  TSYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFG 101

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQG 387
           + M   G++ N  T NI++N          A  +  +M+KL  E D  T   ++  FC G
Sbjct: 102 EKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHG 161

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
             +  A  +   M    + P   TF+ LI+GL      S++  L++ M+++G +P   T+
Sbjct: 162 NRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTY 221

Query: 448 GKLRKLLIKEGREDVLKFLQEKM 470
           G +   L K G  D+   L  KM
Sbjct: 222 GAVVNGLCKRGDTDLALNLLNKM 244


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 153/301 (50%), Gaps = 2/301 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  + I +R   R  K+EEA   F +M+ +GV  NL  ++ ++   CK+ N+R+A  ++
Sbjct: 267 NVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLY 326

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            + +    +P+   +  L++G+ K   L  AR +F  MV  G +P++  Y  ++   CK+
Sbjct: 327 KEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKS 386

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G + EA+G++  M+S    P  F Y++L++    E R+ +A   F  M+   I      Y
Sbjct: 387 GNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTY 446

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N+LI  FCK    +    +  +M S GV PN  T + +++G         A  ++  M I
Sbjct: 447 NSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTI 506

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    D  TYT +I    +   +++A +++  M      P+ HTF+ L++G   +G +SD
Sbjct: 507 KGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSD 566

Query: 428 S 428
           +
Sbjct: 567 A 567



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 156/370 (42%), Gaps = 38/370 (10%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I+    R ++ +     + +M   G+  ++  ++ L     K     K +++ D M    
Sbjct: 204 ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLG 263

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P+   Y+I +    ++  +  A ++F  M   G  P++ TY  M+D  CK G + +A 
Sbjct: 264 VKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAY 323

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           G+ K +      P   ++  LV  +     +  A   F+ M K G+  ++ +YN LI   
Sbjct: 324 GLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQ 383

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK+        +L +M S  ++P+  T  I++NGL       EA R+F+RM  +     +
Sbjct: 384 CKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSS 443

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD------------- 421
            TY  +I  FC+   +EKA  +   M      P++ TFS LI+G C              
Sbjct: 444 VTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFE 503

Query: 422 ---KGIVSDSCV-------------------LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              KGIV D                      L  DM+E GI P+  TF  L     KEGR
Sbjct: 504 MTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGR 563

Query: 460 -EDVLKFLQE 468
             D + F  E
Sbjct: 564 LSDAIDFYLE 573



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 46/243 (18%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKY 141
            F+  + ++ +  SV  Y+S+I    K    +   DL + M +  +  N+ TF  ++  Y
Sbjct: 430 LFQRMKNERIFPSSV-TYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGY 488

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDS 200
            +V+ ++ A+  +  M   G+  ++  +  L+ A  K  N+++A  ++ D ++    P+ 
Sbjct: 489 CKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPND 548

Query: 201 KTYSILLEGWGKDPNLP------------------------------------------- 217
            T++ L++G+ K+  L                                            
Sbjct: 549 HTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYIL 608

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           RA   F +M   G  PDI +Y  M+    +  R+ + + +   M  T   P   +  +L 
Sbjct: 609 RASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVNQLLA 668

Query: 278 HTY 280
             Y
Sbjct: 669 MFY 671


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 200/429 (46%), Gaps = 23/429 (5%)

Query: 45  SPKVVLDTALDQS--GIRVSPEIVE--DVLEKF-------RNAGTLAFCFFKWAE----- 88
           +P V+L T L +    +R  P+ V   ++LEKF        NA    FC     +     
Sbjct: 121 NPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRV 180

Query: 89  ----KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYAR 143
               + +++      Y+ MI SL    +  +   ++N + +      V T+ I++     
Sbjct: 181 LDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATML 240

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
              V+EA+   + M   G+  ++  +N ++  +CK   V +A E+   ++ +   PD  +
Sbjct: 241 EGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVIS 300

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ILL             ++  +M    C+P++VTY I++  LC+ G+++EA+ ++K M 
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P ++ Y  L+  +  E R++ A++    M  +G L D+  YN ++   CK  K  
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKAD 420

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA-YRVFRRMIKLCEADADTYTMMI 381
               +   +   G +PNS + N + + L   G+   A + +   M    + D  TY  MI
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+ G +++AF++   M+   F PS+ T+++++ G C    + D+  +LE M+  G R
Sbjct: 481 SCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCR 540

Query: 442 PSGETFGKL 450
           P+  T+  L
Sbjct: 541 PNETTYTVL 549



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 158/326 (48%), Gaps = 1/326 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I  +  R     E+++    M + G   ++     L+      +N+ KA  + + ++   
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            PD   Y+ L+ G+ K   +  A  +   M     +PD VTY IM+  LC  G++D AL 
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++  + S  C+PT   Y++L+    +E  +++A+    EM   G+  D+  YN +I   C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
           K       + +++++  KG  P+  + NI+L  L+ +G+ +E  ++  +M  + C+ +  
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY+++I   C+ G++E+A  + K MK K   P  +++  LI   C +G +  +   LE M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED 461
           I  G  P    +  +   L K G+ D
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKAD 420



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 149/308 (48%), Gaps = 2/308 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E  V +Y+ ++ +L    +++    L+  M +++   NV T+ I++    R  K+EEA+ 
Sbjct: 295 EPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMN 354

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
              +M++ G+T +  +++ L++A C+   +  A E  + M  D  +PD   Y+ +L    
Sbjct: 355 LLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLC 414

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K+    +A EIF ++ + GC+P+  +Y  M   L  +G    AL ++  M S    P   
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ ++     E  +++A +  ++M        V  YN ++  FCKA++ ++   VL+ M
Sbjct: 475 TYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESM 534

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
              G  PN  T  +++ G+   G   EA  +   ++++      ++  + + F     L+
Sbjct: 535 VGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQ 594

Query: 392 KAFKVWKY 399
           ++ + + Y
Sbjct: 595 RSSQTFGY 602



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           C++G   E+L ++++M      P   + + L+  +     I  AV     +EK G   DV
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YNALI  FCK N+  +  RVL  M SK  +P++ T NI++  L  RG+ D A +V  +
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 366 MIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           ++   C+    TYT++I+     G +++A K+   M  +   P M T++ +I G+C +G+
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           V  +  ++ ++  KG  P   ++  L + L+ +G+ +  + L  KM
Sbjct: 279 VDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM 324



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 1/157 (0%)

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375
           C++  +     +L+ M  KG  P+   C  ++ G        +A RV   + K  + D  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y  +I  FC+   ++ A +V   M+ K F P   T++++I  LC +G +  +  +L  +
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 436 IEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQEKMN 471
           +    +P+  T+  L    +++ G ++ LK + E ++
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 179/362 (49%), Gaps = 11/362 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y++ IE   K      + +++  M  + +  NV T+ +++  ++ + K+EEA   F
Sbjct: 259 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 318

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213
             M++ G+  ++  +  ++S  C+S NV++A  +FD M D+  IP + TY  L+ G  K 
Sbjct: 319 EEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKA 378

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A+ +  EM   G + + V +  ++D  C++G VDEAL +   M+        F Y
Sbjct: 379 GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAY 438

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + +       NR ++A      M + G+  +   +  LI  +CK   F    RV ++M  
Sbjct: 439 NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 498

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRV-----FRRMIKLCEADADTYTMMIKMFCQGG 388
           KG  PN  T N++++G   RG   EA+++      R +I     D  T T +I   C  G
Sbjct: 499 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLI----PDVYTCTSLIHGECIDG 554

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +++ A K++  M  +  +P++ T++ +I+GL   G   ++  L ++M E G+ P    + 
Sbjct: 555 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYS 614

Query: 449 KL 450
            L
Sbjct: 615 SL 616



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 170/342 (49%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+   +  Y +   +        +M+K GV  N+  +  L+        + +AQ +F
Sbjct: 259 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 318

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+++ I  D   Y+ ++    +  N+ RA  +F EM D G  P   TYG ++  +CKA
Sbjct: 319 EEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKA 378

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+++ A  +V  M          I++ L+  Y     +++A+   + MEK G+ +DV  Y
Sbjct: 379 GQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAY 438

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N++    CK N+      +L  M  +GV+PN+ +   +++     G   EA RVFR M +
Sbjct: 439 NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 498

Query: 369 LCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                +  TY ++I  + + G +++A K+   ++ +  IP ++T + LI+G C  G V  
Sbjct: 499 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 558

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +  L ++M ++G+ P+  T+  +   L K+GR E+  K   E
Sbjct: 559 ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDE 600



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 139/266 (52%), Gaps = 6/266 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S   Y ++I  + K  Q +    LVN M+ K + LN   F  ++  Y     V+EA+   
Sbjct: 364 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 423

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
            VM+K G+  ++ A+N + S LCK     +A+ +   M +R + P++ +++ L++ + K+
Sbjct: 424 VVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKE 483

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A+ +FREM + G  P+I+TY +++D   K G + EA  +   +++    P  +  
Sbjct: 484 GNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTC 543

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H   ++ +++ A+  F EM + G++ +V  Y A+I    K  + +  +++  +M  
Sbjct: 544 TSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKE 603

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEA 359
            G+ P+    + + + L+G   + E+
Sbjct: 604 TGLTPD----DTVYSSLVGSLHSAES 625



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 176/427 (41%), Gaps = 41/427 (9%)

Query: 17  SFLRRYNSSEPSTEA-LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRN 75
           S L++  SS PS +   + A  ISK ++SS    L T        ++ + V  +L     
Sbjct: 8   SNLKKAFSSNPSLKLNQEIAGKISKTLVSSGAKSLQTTPSLLS-SLNSQTVHLILSNHIL 66

Query: 76  AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135
                  FF +  K   Y+  +RAY ++I  L + R+                       
Sbjct: 67  TAESCLDFFHFIRKNY-YKPDLRAYITLIFKLYRSRKSD--------------------- 104

Query: 136 IIMRKYARVQKVEEAVYTFNVMQ-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
               K  + QK  E  + FN      G+   +     L+   C      +A+      K+
Sbjct: 105 ----KLHKSQKFAEIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCNRAK-----FKE 155

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           +F      + +L   +  +     A E F  M   G + D  +  + +  L + G+VD  
Sbjct: 156 KF------FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSC 209

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           L   + M +     T +  ++++        +E       E+   G+ A+V  YNA I  
Sbjct: 210 LRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEG 269

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEAD 373
           + K      V  +L  M  +GVA N  T  ++++G    G+ +EA R+F  M  K  EAD
Sbjct: 270 YFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 329

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              YT +I   C+ G +++A  ++  M  K  IPS HT+  LI+G+C  G +  + +L+ 
Sbjct: 330 VYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVN 389

Query: 434 DMIEKGI 440
           +M  KGI
Sbjct: 390 EMQGKGI 396



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 144/318 (45%), Gaps = 3/318 (0%)

Query: 52  TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKI 110
           T +++ G+  +      ++  F N G +      + E +++  E  V  Y S+I    + 
Sbjct: 284 TLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 343

Query: 111 RQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
              +    L + M  K ++ +  T+  ++    +  ++E A    N MQ  G+  N   F
Sbjct: 344 GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 403

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N L+   C+S  V +A  +   M+ + +  D   Y+ +  G  K      A+ +   MV+
Sbjct: 404 NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVE 463

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P+ +++  ++D+ CK G   EA  + + M+     P    Y+VL+  Y     +++
Sbjct: 464 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKE 523

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     E+E  G++ DV    +LI   C   K     ++  +M  +G+ PN  T   +++
Sbjct: 524 AHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 583

Query: 349 GLIGRGETDEAYRVFRRM 366
           GL   G ++EA++++  M
Sbjct: 584 GLSKDGRSEEAFKLYDEM 601


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 178/367 (48%), Gaps = 3/367 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S++ + +++ +  K R  + +  L+  M +  +  N+ T+ I +R   R  +++EA    
Sbjct: 228 SLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIM 287

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M+  G   ++  +  L+ ALC +  +  A E+F  MK     PD  TY  +L+ +   
Sbjct: 288 KRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDC 347

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L R +E + EM   G  PD++T+ I+V+ LCKAG +DEA  ++  M      P    Y
Sbjct: 348 GDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTY 407

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+      NR++DA+D F  ME  G++     Y   I  + K+ +        + M  
Sbjct: 408 NTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKI 467

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEK 392
           +G+APN   CN  L  L   G   EA  +F R+     A D+ TY MM+K + + G++++
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDE 527

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M   +  P +   + LIN L   G V ++  +   + +  + P+  T+  L  
Sbjct: 528 AIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIA 587

Query: 453 LLIKEGR 459
            L KEG+
Sbjct: 588 GLGKEGQ 594



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 205/476 (43%), Gaps = 65/476 (13%)

Query: 28  STEALDAAKSISKIMLSSPKV--VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFK 85
           S+  L  AK   K  LSS +V  VL++ LD                      T AF +F 
Sbjct: 74  SSHGLVVAKRKPKNALSSKEVMAVLNSILDP---------------------TDAFSYFN 112

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT---KRMLNVETFCIIMRKYA 142
              +     H+    + M+E L   R+   M  + N M+    KR LN  T+ II +   
Sbjct: 113 SVAEMPFVVHTTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLN--TYLIIFKGLF 170

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSK 201
               + +  + F  M++ G   N  ++NGL+  L +S   R+A E++  M  +   P  K
Sbjct: 171 IRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLK 230

Query: 202 TYSILL-------------------EGWGKDPNL----------------PRAREIFREM 226
           T+S L+                   E  G  PN+                  A  I + M
Sbjct: 231 TFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM 290

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            D GC PD+VTY +++D LC AG++D+A+ +   M ++  +P    Y  ++  +     +
Sbjct: 291 EDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDL 350

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
               + + EME +G   DV  +  L+ A CKA      + +L  M  +GV PN  T N +
Sbjct: 351 GRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTL 410

Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           ++GL+     D+A  +F  M  L     A TY + I  + + G  +KA + ++ MK++  
Sbjct: 411 ISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGI 470

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            P++   +  +  L + G + ++ V+   +   G+ P   T+  + K   K G+ D
Sbjct: 471 APNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVD 526



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 157/310 (50%), Gaps = 2/310 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           ++Q    ++  Y+++I  L ++ +     DL N M T  ++    T+ + +  Y +  + 
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRS 455

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSIL 206
           ++A+ TF  M+  G+  N+ A N  L +L +   +R+A+ IF+ +K +   PDS TY+++
Sbjct: 456 DKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMM 515

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++ + K   +  A E+  +M +  C PDI+    +++ L KAGRVDEA  +   +     
Sbjct: 516 MKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKL 575

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            PT   Y+ L+   G E +++ A++ F  M  NG   +   +N ++   CK ++     +
Sbjct: 576 APTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALK 635

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           +L  M +    P+  T N I++GL+      +A  +F +M K+   D  T   ++    +
Sbjct: 636 MLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLLPGVVK 695

Query: 387 GGELEKAFKV 396
            G +E AFK+
Sbjct: 696 NGLMEDAFKI 705



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 166/342 (48%), Gaps = 4/342 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V TF I++    +   ++EA +  +VM+K GV  NL  +N L+S L +   +  A ++F
Sbjct: 368 DVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLF 427

Query: 190 DCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+    +P + TY + ++ +GK     +A E F +M   G  P+IV     +  L + 
Sbjct: 428 NNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEM 487

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+ EA  I   + S    P S  Y++++  Y    ++++A++   +M +N    D+ + 
Sbjct: 488 GRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVI 547

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N+LI    KA +    +++   +    +AP   T N ++ GL   G+   A  +F  M  
Sbjct: 548 NSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTG 607

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C  +  T+  ++   C+  E++ A K+   M     +P + TF+ +I+GL  +  VSD
Sbjct: 608 NGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSD 667

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
           +  L   M +K + P   T   L   ++K G  ED  K  ++
Sbjct: 668 AIWLFHQM-KKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAED 708



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 171/353 (48%), Gaps = 6/353 (1%)

Query: 69   VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
            VL K + A      F ++  K+   + ++ +Y+ +IE    +   ++ W+L   M+    
Sbjct: 763  VLCKHKQALVAQSVFIRFT-KELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGC 821

Query: 129  L-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
              +V T+ +++  + +  K+ E    +  M       N    N +++ L KS ++ KA +
Sbjct: 822  APDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALD 881

Query: 188  IF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
            +F D +   F P   TY  LL+G  K   L  A+E+F EMVD GC P+   Y I+++   
Sbjct: 882  LFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFG 941

Query: 247  KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            K G V+ A  + K M     RP    Y+ LV       R++DA+  F ++++ G+  D  
Sbjct: 942  KTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSI 1001

Query: 307  MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             YN +I    ++++ +    +  +M S+G+ P+  T N ++  L   G  ++A +++  +
Sbjct: 1002 AYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEEL 1061

Query: 367  --IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
              I L E +  TY  +I+ +   G  + A+ V+K M +    P+  TF+ L N
Sbjct: 1062 QFIGL-EPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQLPN 1113



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 149/313 (47%), Gaps = 11/313 (3%)

Query: 172  LLSALCKSKNVRKAQEIFDCMKDRFI------PDSKTYSILLEGWGKDPNLPRAREIFRE 225
            ++  LCK K    AQ +F     RF       P  ++Y+ L+EG+    N   A  +F E
Sbjct: 760  IIKVLCKHKQALVAQSVFI----RFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTE 815

Query: 226  MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
            M + GC PD+ TY +++D   K+G+++E   + + M  + C+P +  +++++      N 
Sbjct: 816  MKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNS 875

Query: 286  IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
            ++ A+D F ++           Y  L+    K+ + +    + ++M   G  PN+   NI
Sbjct: 876  LDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNI 935

Query: 346  ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
            ++NG    G+ + A  +F+RM++     D  +YT ++   C+ G ++ A   ++ +K   
Sbjct: 936  LINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995

Query: 405  FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
                   ++++I+GL     + ++  L ++M  +GI P   T+  L   L   G  +   
Sbjct: 996  LYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAG 1055

Query: 465  FLQEKMNLLVKEP 477
             L E++  +  EP
Sbjct: 1056 KLYEELQFIGLEP 1068



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK-MFCQGGELEKA 393
           V   + TCN +L  L       +   VF  M  ++ + D +TY ++ K +F +GG  +  
Sbjct: 120 VVHTTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTP 179

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
           F   K M+   F  + ++++ LI+ L   G+  ++  +   M+ +G++PS +TF  L   
Sbjct: 180 FAFGK-MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVA 238

Query: 454 LIKEGREDVLKFLQEKMNLLVKEP 477
             K    + +K L E+M  L  +P
Sbjct: 239 TGKRRDTETVKSLLEEMESLGLKP 262


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 181/355 (50%), Gaps = 3/355 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY S++ +  K R+ ++   ++  M T+  + NV+TF ++++ +    KV +A+  +N M
Sbjct: 264 AYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWM 323

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G   +  ++N L+  LC   ++++A  +F CM K   +PD +TYS L++G+ K  +L
Sbjct: 324 VAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDL 383

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  I+ +M + GC P++V Y  MVDVLCK    D+A  ++  M    C P +  ++ L
Sbjct: 384 DVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTL 443

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           + +     R   A++ F  M + G   +   YN L+    +    ++  R+L +M + G 
Sbjct: 444 IRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGF 503

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
             +  + N  ++GL       EA  +  RM I+  + DA T+  +I  +C+ G +  A  
Sbjct: 504 ELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAW 563

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +   M       ++  ++ L++GLC +  + D+ V L  M+ +GI P+  T+  L
Sbjct: 564 MLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVL 618



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 9/336 (2%)

Query: 141 YARVQKVEEAVYTF-NVMQKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
           +AR    + A+ TF       G     +  +N LL AL +   V     ++D M+   + 
Sbjct: 100 FARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVE 159

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  TY++L++   ++  +  AR +  EM   GC PD V++  ++  LCK  R+DEA GI
Sbjct: 160 PNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGI 219

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M      P    Y+ +VH    + R+ +      EM   G+  D   Y +++GAFCK
Sbjct: 220 LAEMT-----PVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCK 274

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-T 376
           A + +    +L  M ++G  PN +T  +++ G    G+  +A  ++  M+    A +  +
Sbjct: 275 ARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTIS 334

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y ++I+  C  G+L++A  V+  M     +P + T+S LI+G    G +  +  +  DM 
Sbjct: 335 YNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMT 394

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
             G +P+   +  +  +L K+   D  + L +KM+L
Sbjct: 395 NAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSL 430



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYS 204
           ++ E     + M   G+  +  A+  ++ A CK++ +R A  I   M  +  +P+ +T++
Sbjct: 242 RMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFT 301

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           +L++G+  D  +  A  ++  MV  G  P  ++Y +++  LC  G +  AL +   M  +
Sbjct: 302 VLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKS 361

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C P    YS L+  +     ++ A+  + +M   G   +V +Y  ++   CK   F   
Sbjct: 362 DCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQA 421

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
             ++  M+ +   PN+ T N ++  L   G    A  VF  M +  C  +  TY  ++  
Sbjct: 422 ENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHG 481

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             + G  E A ++   M    F  S+ +++  I+GLC   ++ ++ +LL  MI +GI+P 
Sbjct: 482 LFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPD 541

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMN 471
             TF  +     KEG      ++  +M+
Sbjct: 542 AFTFNAIIHAYCKEGNVRAAAWMLGRMD 569



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 4/257 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           VR Y ++I+  +K     +   + N M       NV  +  ++    +    ++A    +
Sbjct: 367 VRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLID 426

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKD 213
            M       N   FN L+ +LC      +A  +F  M+ R+   P+ +TY+ LL G  ++
Sbjct: 427 KMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMR-RYGCPPNDRTYNELLHGLFRE 485

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            N   A  +  EM++ G    +V+Y   +  LC+   + EA+ ++  M     +P +F +
Sbjct: 486 GNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTF 545

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++H Y  E  +  A      M+      ++  Y +L+   C  +K  +    L  M  
Sbjct: 546 NAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLY 605

Query: 334 KGVAPNSRTCNIILNGL 350
           +G+ PN  T N+++ G+
Sbjct: 606 EGICPNEATWNVLVRGI 622


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 167/347 (48%), Gaps = 3/347 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I+ L K +     +D    M ++ +  +V T+  ++  +    ++  A    N
Sbjct: 272 VVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLN 331

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M    +  ++  +  L+ ALCK   +++A+ +   M K+   P+  TYS L++G+    
Sbjct: 332 EMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVG 391

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A++IF  MV T  NP + +Y IM++ LCK   VDEA+ +++ M      P +  Y+
Sbjct: 392 EVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYN 451

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+       RI  A+D   E+   G  ADV  Y +L+   CK         +   M  +
Sbjct: 452 SLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKER 511

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGELEKA 393
           G+ PN  T   +++GL        A ++F+  ++K C  D  TY +MI   C+ G L++A
Sbjct: 512 GIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEA 571

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             +   M+    IP   TF ++I  L +K     +  LL +MI KG+
Sbjct: 572 LAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 163/344 (47%), Gaps = 2/344 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  ++  ++    ++ +   A+    +++      ++  +N ++  LCK K V +A + 
Sbjct: 235 MNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDF 294

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           +  M  R I PD  TYS L+ G+     L  A  +  EM     NPD+ TY I++D LCK
Sbjct: 295 YTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCK 354

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G++ EA  ++  M     +P    YS L+  Y +   + +A   F  M +  +   V  
Sbjct: 355 EGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCS 414

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN +I   CK         +L++M  K V PN+ T N +++GL   G    A  + + + 
Sbjct: 415 YNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELH 474

Query: 368 KLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
              + AD  TYT ++   C+   L+KA  ++  MK +   P+ +T++ LI+GLC    + 
Sbjct: 475 HRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLK 534

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++  L + ++ KG      T+  +   L KEG  D    ++ KM
Sbjct: 535 NAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKM 578



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 3/347 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           S+  +  ++ SL K++ +     L   M  K +  ++ T  I++  +  + ++  +    
Sbjct: 131 SIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVL 190

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKD 213
             + K G   N      L+  LC    V+K+    D  +   F  +  +Y  LL G  K 
Sbjct: 191 GKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKI 250

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A ++ R + D    PD+V Y  ++D LCK   V+EA      M+S    P    Y
Sbjct: 251 GETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITY 310

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+  + +  ++  A     EM    I  DV  Y  LI A CK  K K    +L  M  
Sbjct: 311 STLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTK 370

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           +GV PN  T + +++G    GE   A ++F  M++        +Y +MI   C+G  +++
Sbjct: 371 EGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDE 430

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           A  + + M  K  +P+  T++ LI+GLC  G ++ +  L++++  +G
Sbjct: 431 AMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRG 477



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 156/332 (46%), Gaps = 2/332 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N      +M+      +V+++++  + +   G   N  ++  LL+ LCK    R A ++ 
Sbjct: 201 NTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLL 260

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             ++DR   PD   Y+ +++G  KD  +  A + + EM   G  PD++TY  ++   C A
Sbjct: 261 RMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLA 320

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++  A  ++  M      P  + Y++L+     E ++++A +    M K G+  +V  Y
Sbjct: 321 GQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTY 380

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + L+  +C   +  N  ++   M    V P+  + NI++NGL      DEA  + R M+ 
Sbjct: 381 STLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLH 440

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K    +  TY  +I   C+ G +  A  + K +  +     + T++ L++GLC    +  
Sbjct: 441 KNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDK 500

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +  L   M E+GI+P+  T+  L   L K  R
Sbjct: 501 AIALFMKMKERGIQPNKYTYTALIDGLCKGAR 532



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 157/328 (47%), Gaps = 2/328 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CM 192
           F  I+    +++    A+     M+  G+  +L   + L++  C    +  +  +    +
Sbjct: 135 FGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKIL 194

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K  + P++   + L++G      + ++     ++V  G   + V+YG +++ LCK G   
Sbjct: 195 KLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETR 254

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A+ +++ ++    RP   +Y+ ++     +  + +A D + EM   GI  DV  Y+ LI
Sbjct: 255 CAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLI 314

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             FC A +    + +L +M  K + P+  T  I+++ L   G+  EA  +   M K   +
Sbjct: 315 CGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVK 374

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +  TY+ ++  +C  GE+  A +++  M      PS+ +++++INGLC    V ++  L
Sbjct: 375 PNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNL 434

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L +M+ K + P+  T+  L   L K GR
Sbjct: 435 LREMLHKNVVPNTVTYNSLIDGLCKSGR 462



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 123/257 (47%), Gaps = 1/257 (0%)

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
           R  P    +  +L    K  + P A  + ++M   G  PD+VT  I+++  C  G++  +
Sbjct: 127 RNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFS 186

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++  +     +P + I + L+    ++  ++ ++    ++   G   +   Y  L+  
Sbjct: 187 FSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNG 246

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEAD 373
            CK  + +   ++L+ +  +   P+    N I++GL      +EAY  +  M  +    D
Sbjct: 247 LCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPD 306

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY+ +I  FC  G+L  AF +   M LK   P ++T+++LI+ LC +G + ++  LL 
Sbjct: 307 VITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLG 366

Query: 434 DMIEKGIRPSGETFGKL 450
            M ++G++P+  T+  L
Sbjct: 367 VMTKEGVKPNVVTYSTL 383



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 113/273 (41%), Gaps = 37/273 (13%)

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P+  T SIL+        +  +  +  +++  G  P+ +T   ++      G    A+ 
Sbjct: 8   VPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMK-----GETRCAIK 62

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTY---------------------GVENRIEDAVDTFLE 295
           + + ++    RP  ++ S L H+                       + + + DAV  F  
Sbjct: 63  LPRMIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQF-- 120

Query: 296 MEKNGIL-----ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
              NG+L       +  +  ++G+  K   F     + K M  KG+ P+  T +I++N  
Sbjct: 121 ---NGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCF 177

Query: 351 IGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G+   ++ V  +++KL  + +    T ++K  C  GE++K+      +  + F  + 
Sbjct: 178 CHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQ 237

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            ++  L+NGLC  G    +  LL  + ++  RP
Sbjct: 238 VSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRP 270


>gi|225443152|ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Vitis vinifera]
          Length = 537

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 193/414 (46%), Gaps = 13/414 (3%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS 102
           LSS   V+   LD SG+  + E+V   +   R    LA+  F W EK     +S R    
Sbjct: 92  LSSEAEVM-AVLDGSGVEPNQELVYWAIWGLREDWRLAYWVFNWGEKWGC--NSERTRGL 148

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           +I  L   +++ + W L+  +    +       I++ +Y       +A+ TF++M+K+ +
Sbjct: 149 VIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCKAIKTFHIMEKFRL 208

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-DPNLPRARE 221
           + +  AF  LL+ALCK  NV  A+E+    K  F  +++ ++I+L GW     ++  A+ 
Sbjct: 209 SPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNGWSNVSLDIFEAKR 268

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           I+REM      P+  TY +M+    K G + ++L +   M      P   +Y+ L++   
Sbjct: 269 IWREMSKCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIPGLEVYNSLIYVLT 328

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            EN + +A+    ++++ G+  D A YN +I   CKA K +    +L  M  + + P + 
Sbjct: 329 HENCLTEALKILGKIKEMGLQLDSASYNCMIRPLCKAKKLEEARTILAAMIGENLGPTTE 388

Query: 342 TCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T +  L G       +E + V + +       + DT+ +++    +  + E A K+W  M
Sbjct: 389 TYHAFLEG----ASYEETFEVLKNLRTAGFGPNGDTFLLILDNLFKLDQPENALKIWVEM 444

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K    +P    + VLI GL   G +  +  L  +M  KG         KL+KLL
Sbjct: 445 KQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDD----PKLKKLL 494


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 203/436 (46%), Gaps = 39/436 (8%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P I  +V++K  N   + F F++++  + N  HS   Y+ +  SL K   + +   + 
Sbjct: 67  LNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMF 126

Query: 121 NAMRT------KRMLN------------------------VETFCII----MRKYARVQK 146
             M++       R+L                         VE  C++    +    ++ +
Sbjct: 127 ECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDR 186

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           VE+A+  F+   ++    +   FN L+  LC      KA E+   M      PD  TY+ 
Sbjct: 187 VEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNT 246

Query: 206 LLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           L++G+ K   L +A E+F++ V +G  C+PD+VTY  M+   CKAG++ EA  ++  M  
Sbjct: 247 LIQGFCKSNELNKASEMFKD-VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLR 305

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               PT+  ++VLV  Y     +  A +   +M   G   DV  + +LI  +C+  +   
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQ 365

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            +R+ ++MN++G+ PN+ T +I++N L       +A  +  ++  K        Y  +I 
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC+ G++ +A  + + M+ K+  P   TF++LI G C KG + ++  +   M+  G  P
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485

Query: 443 SGETFGKLRKLLIKEG 458
              T   L   L+K G
Sbjct: 486 DKITVSSLLSCLLKAG 501



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 101 HSMIESLAKIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           +S++ +L K+ + +    L +  +R +   + +TF I++R    V K E+A+    VM  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIF------------------------------ 189
           +G   ++  +N L+   CKS  + KA E+F                              
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMR 294

Query: 190 -------DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                  D ++    P + T+++L++G+ K   +  A EI  +M+  GC PD+VT+  ++
Sbjct: 295 EASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLI 354

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D  C+ G+V +   + + M++    P +F YS+L++    ENR+  A +   ++    I+
Sbjct: 355 DGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII 414

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
               MYN +I  FCKA K      ++++M  K   P+  T  I++ G   +G   EA  +
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           F +M+ + C  D  T + ++    + G  ++A+ +
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 155/349 (44%), Gaps = 38/349 (10%)

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLP 217
           K  +  +   +N L  +LCK+     A ++F+CMK D   P+++    L+  + +   L 
Sbjct: 96  KLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLH 155

Query: 218 RAREIFREMVDT----------------------------------GCNPDIVTYGIMVD 243
            A  +  +  +                                    CN D  T+ I++ 
Sbjct: 156 FATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIR 214

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LC  G+ ++AL ++  M    C P    Y+ L+  +   N +  A + F +++   + +
Sbjct: 215 GLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS 274

Query: 304 -DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  Y ++I  +CKA K +    +L DM   G+ P + T N++++G    GE   A  +
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             +MI   C  D  T+T +I  +C+ G++ + F++W+ M  +   P+  T+S+LIN LC+
Sbjct: 335 RGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN 394

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  +  +  LL  +  K I P    +  +     K G+ +    + E+M
Sbjct: 395 ENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 10/301 (3%)

Query: 57  SGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           SG    P+IV    +++ F  +  L  A   FK  +        V  Y SMI    K  +
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGK 292

Query: 113 YQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +    L++ M R        TF +++  YA+  ++  A      M  +G   ++  F  
Sbjct: 293 MREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTS 352

Query: 172 LLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+   C+   V +   +++ M  R   P++ TYSIL+     +  L +ARE+  ++    
Sbjct: 353 LIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKD 412

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P    Y  ++D  CKAG+V+EA  IV+ M+   C+P    +++L+  + ++ R+ +AV
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY---RVLKDMNSKGVAP-NSRTCNII 346
             F +M   G   D    ++L+    KA   K  Y   ++ +   S  V P  ++T N  
Sbjct: 473 SIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVPLETKTANAT 532

Query: 347 L 347
           L
Sbjct: 533 L 533


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 197/398 (49%), Gaps = 8/398 (2%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV-ETFCII 137
           +A  FF WA++Q  Y H    Y+SM+E L+K +  Q    ++  M+ + +    E F  +
Sbjct: 189 VALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRV 248

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRF 196
           M  Y+R  ++ +A+    +MQ+ GV  NL   N  +    ++  + KA    + M+    
Sbjct: 249 MVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGI 308

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P+  TY+ ++ G+     +  A E+  +M   GC PD V+Y  ++  LCK  R+ E   
Sbjct: 309 VPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRD 368

Query: 257 IVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           ++K M       P    Y+ L+H     +  ++A+    + ++ G   D   Y+A++ A 
Sbjct: 369 LMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHAL 428

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADA 374
           CK  +      ++ +M+     P+  T   ++NG    GE D+A ++ + M     + + 
Sbjct: 429 CKEGRMSEAKDLINEMD---CPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNT 485

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +YT ++   C+ G+  +A ++    +   + P+  T+SV+++GL  +G +S++C ++ +
Sbjct: 486 VSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVRE 545

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           M+ KG  P       L + L ++GR  +  KF++E +N
Sbjct: 546 MVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 583



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 173/383 (45%), Gaps = 5/383 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
           A  F K A+ ++ +      Y +++ +L K  +     DL+N M      +V T+  ++ 
Sbjct: 402 ALWFLKDAQ-EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPP--DVVTYTAVVN 458

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
            + R+ +V++A     VM  +G   N  ++  LL+ +C++    +A+E+ +  ++ +  P
Sbjct: 459 GFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSP 518

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           +S TYS+++ G  ++  L  A ++ REMV  G  P  V   +++  LC+ GR  EA   +
Sbjct: 519 NSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFM 578

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           +   +  C      ++ ++H +   + ++ A+    +M      ADV  Y  L+    K 
Sbjct: 579 EECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKK 638

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378
            +      ++K M  KG+ P   T   +++     G+ D+   +  +MI   +     Y 
Sbjct: 639 GRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRT-IYN 697

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I+  C  G+LE+A  +   +          T   L+ G   KG+   +  +   M  +
Sbjct: 698 QVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNR 757

Query: 439 GIRPSGETFGKLRKLLIKEGRED 461
            + P  +   KL K L+ +G+ D
Sbjct: 758 NLIPDVKMCEKLSKRLVLKGKVD 780



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 115/239 (48%), Gaps = 13/239 (5%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           ++++   R  +  EA          G   N+  F  ++   C++  +  A  + D   D 
Sbjct: 560 LLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD---DM 616

Query: 196 FI----PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           ++     D  TY+ L++  GK   +  A E+ ++M+  G +P  VTY  ++   C+ G+V
Sbjct: 617 YLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKV 676

Query: 252 DEALGIVKSMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYN 309
           D+ + I++ M S   CR    IY+ ++    V  ++E+A DT L ++ +    +D     
Sbjct: 677 DDLVAILEKMISRQKCRT---IYNQVIEKLCVLGKLEEA-DTLLGKVLRTASRSDAKTCY 732

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           AL+  + K     + Y+V   M ++ + P+ + C  +   L+ +G+ DEA ++  R+++
Sbjct: 733 ALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVE 791


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 185/366 (50%), Gaps = 6/366 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I   +K+ + Q    ++   + K  +  E T+C ++    +   ++ A+  F   
Sbjct: 295 TYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEA 354

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G+  ++  +N L+  L +   V KA ++ + M K+   PD  TY++++ G  K   +
Sbjct: 355 LGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCV 414

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +    +  G  PDI T+  ++D  CK  ++D A+GI+ SM S    P    Y+ +
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSI 474

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++      + ED ++TF  + + G L ++  YN LI + CKA K      +L+++ ++G+
Sbjct: 475 LNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL 534

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM---IKLCEADADTYTMMIKMFCQGGELEKA 393
            P+  +   +++G    G+ DEAY++FRRM    ++C   A TY +MI  F +  +++ A
Sbjct: 535 IPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVA-TYNIMINAFSEKLDMDMA 593

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            K++  M  K   P  +T+ V+I+G C  G V+     L   IE G  PS  TFG++   
Sbjct: 594 QKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINC 653

Query: 454 LIKEGR 459
           L  + R
Sbjct: 654 LCVQHR 659



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 191/430 (44%), Gaps = 56/430 (13%)

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
           P+ V  VL K++     A   F   +K+  ++H+   Y  MIE L    ++  M  ++  
Sbjct: 7   PKHVAAVL-KYQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLME 65

Query: 123 MRTKRMLNVET------FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           MR    LNV+       +   MR Y R  KV+EAV  F  M  Y    ++ ++N +++ L
Sbjct: 66  MR----LNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNIL 121

Query: 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
            +     +A +++  MK                                    G  PD+ 
Sbjct: 122 VEYGYFNQAHKVYLRMKHE----------------------------------GIAPDVC 147

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           T+ I +   C+  R   AL ++ +M S  C   + +Y  ++  +  EN   +A + F +M
Sbjct: 148 TFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKM 207

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            + GI   +A +N L+   CK    +   ++L  +   GV PN  T NI + GL  +G  
Sbjct: 208 LRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVL 267

Query: 357 D-------EAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           +       EA     +M+ K  E D  TY  +I  + + G+++ A ++ K  K K F+P 
Sbjct: 268 EGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPD 327

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             T+  LI G+C  G +  +  L E+ + KG++PS   +  L K L ++G   VLK LQ 
Sbjct: 328 EFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGL--VLKALQ- 384

Query: 469 KMNLLVKEPL 478
            MN + KE +
Sbjct: 385 LMNDMSKEGM 394



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 12/369 (3%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQI-MWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVE 148
           Q  E +   Y ++I    +   YQ+  ++L N M R     ++ TF  +M    +   ++
Sbjct: 175 QGCELNAVVYCTVISGFYE-ENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQ 233

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCK--------SKNVRKAQEIFDCMKDRFIPDS 200
           E     N + K GV  NL  FN  +  LC+        SK V     +   +     PD 
Sbjct: 234 EGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDD 293

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY+ ++ G+ K   +  A  I ++    G  PD  TY  ++  +C+ G +D AL + + 
Sbjct: 294 FTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEE 353

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
                 +P+  +Y+ L+     +  +  A+    +M K G+  D+  YN +I   CK   
Sbjct: 354 ALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGC 413

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
             +   +L    +KG  P+  T N +++G   R + D A  +   M       D  TY  
Sbjct: 414 VSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNS 473

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           ++   C+  + E   + +K +  K  +P++ T+++LI  LC    V+++  LLE++  +G
Sbjct: 474 ILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRG 533

Query: 440 IRPSGETFG 448
           + P   +FG
Sbjct: 534 LIPDPVSFG 542



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 5/276 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+ +I  L K+       +L+NA   K  L ++ TF  ++  Y +  K++ A+   +
Sbjct: 398 IWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILD 457

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDP 214
            M  +GVT ++  +N +L+ LCK+       E F   M+   +P+  TY+IL+E   K  
Sbjct: 458 SMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKAR 517

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPTSFI 272
            +  A ++  E+ + G  PD V++G ++   C  G +DEA  + + M+    +C  T   
Sbjct: 518 KVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICH-TVAT 576

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+++++ +  +  ++ A   F EM   G   D   Y  +I  FCK     + Y  L    
Sbjct: 577 YNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEI 636

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             G  P+  T   ++N L  +    EA  +   M++
Sbjct: 637 EIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVR 672



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 97/180 (53%), Gaps = 3/180 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+ +IESL K R+     DL+  +R + ++ +  +F  ++  +     ++EA   F
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLF 561

Query: 155 NVM-QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
             M Q+Y +   +A +N +++A  +  ++  AQ++F  M D+   PDS TY ++++G+ K
Sbjct: 562 RRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCK 621

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             N+    +   + ++ G  P + T+G +++ LC   RV EA+GIV  M  T   P + +
Sbjct: 622 VGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 184/413 (44%), Gaps = 43/413 (10%)

Query: 91   QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
            + Y   V +Y ++I    +  +   +W L+  M+ K +  N  T+  I+    R+ K+ E
Sbjct: 698  KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAE 757

Query: 150  AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
            A   F+ M   G+  +   +  L+   CK  ++R A + F  M  R I PD  TY+ ++ 
Sbjct: 758  AEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 817

Query: 209  GWGKDPNLPRAREIFREM-----------------------------------VDTGCNP 233
            G+ +  ++  A ++F EM                                   +  GC+P
Sbjct: 818  GFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSP 877

Query: 234  DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
            ++VTY  ++D LCK G +D A  ++  M     +P  F Y+ +V+       IE+AV   
Sbjct: 878  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 937

Query: 294  LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             E E  G+ AD   Y  L+ A+CK+ +      +L +M  KG+ P   T N+++NG    
Sbjct: 938  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLH 997

Query: 354  GETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
            G  ++  ++   M+ K    +A T+  ++K +C    L+ A  ++K M  +   P   T+
Sbjct: 998  GMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTY 1057

Query: 413  SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-----EGRE 460
              L+ G C+   + ++  L ++M  KG   S  T+  L K   K     E RE
Sbjct: 1058 ENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEARE 1110



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 197/444 (44%), Gaps = 22/444 (4%)

Query: 32  LDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFF------- 84
            D A+S     L S  +V+  A+    ++V+  ++    E+ +   T +F  F       
Sbjct: 531 FDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTESFVQFFDLLVYT 590

Query: 85  --KWAEKQQNYE--HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
              W    + ++    V     M+    K+ +  + + LV        L+V++  + + +
Sbjct: 591 YKDWGSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLV--------LSVDSCNVYLAR 642

Query: 141 YAR-VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIP 198
            ++   K   A+  F    + GV  N+A++N ++  +C+   + +A  +   M+ + + P
Sbjct: 643 LSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTP 702

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  +YS ++ G+ +   L +  ++  +M   G  P+  TYG ++ +LC+  ++ EA    
Sbjct: 703 DVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAF 762

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M      P + +Y+ LV  +     I  A   F EM    I  DV  Y A+I  FC+ 
Sbjct: 763 SEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 822

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTY 377
                  ++  +M  +G+ P+  T   ++NG    G   +A+RV   MI+  C  +  TY
Sbjct: 823 GDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTY 882

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T +I   C+ G+L+ A ++   M      P++ T++ ++NGLC  G + ++  L+ +   
Sbjct: 883 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA 942

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
            G+     T+  L     K G  D
Sbjct: 943 AGLNADTVTYTTLMDAYCKSGEMD 966



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 191/434 (44%), Gaps = 44/434 (10%)

Query: 69  VLEKFRNAGTLAFCFFKWAE--KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           VL K +    L   FF WA   +  N E      H  + S    +  ++   L+++   +
Sbjct: 516 VLMKIKCDYRLVLDFFDWARSRRDSNLESLCIVIHLAVAS----KDLKVAQSLISSFWER 571

Query: 127 RMLNV----------------------ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
             LNV                        F +  +       + EA   F  M  YG+  
Sbjct: 572 PKLNVTESFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVL 631

Query: 165 NLAAFNGLLSALCKSKN--------VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           ++ + N  L+ L K  N         R+  E+  C       +  +Y+I++    +   +
Sbjct: 632 SVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCW------NVASYNIVIHFVCQLGRI 685

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +   M   G  PD+++Y  +++  C+ G +D+   +++ M     +P S+ Y  +
Sbjct: 686 NEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSI 745

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +       ++ +A + F EM   GIL D  +Y  L+  FCK    +   +   +M+S+ +
Sbjct: 746 IGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDI 805

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            P+  T   I++G    G+  EA ++F  M+ +  E D  T+T ++  +C+ G ++ AF+
Sbjct: 806 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFR 865

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           V  +M      P++ T++ LI+GLC +G +  +  LL +M + G++P+  T+  +   L 
Sbjct: 866 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 925

Query: 456 KEGR-EDVLKFLQE 468
           K G  E+ +K + E
Sbjct: 926 KSGNIEEAVKLVGE 939



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 119/238 (50%), Gaps = 1/238 (0%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            NV T+  ++    +   ++ A    + M K G+  N+  +N +++ LCKS N+ +A ++ 
Sbjct: 878  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 937

Query: 190  DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
               +   +  D+ TY+ L++ + K   + +A+EI  EM+  G  P IVT+ ++++  C  
Sbjct: 938  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLH 997

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G +++   ++  M +    P +  ++ LV  Y + N ++ A   + +M   G+  D   Y
Sbjct: 998  GMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTY 1057

Query: 309  NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
              L+   C A   K  + + ++M  KG + +  T ++++ G   R +  EA  +F +M
Sbjct: 1058 ENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQM 1115



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 2/252 (0%)

Query: 90   QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVE 148
            Q     +V  Y ++I+ L K        +L++ M +     N+ T+  I+    +   +E
Sbjct: 872  QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE 931

Query: 149  EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            EAV      +  G+  +   +  L+ A CKS  + KAQEI   M  + + P   T+++L+
Sbjct: 932  EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLM 991

Query: 208  EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
             G+     L    ++   M+  G  P+  T+  +V   C    +  A  I K M S    
Sbjct: 992  NGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVE 1051

Query: 268  PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
            P    Y  LV  +     +++A   F EM+  G    V+ Y+ LI  F K  KF     +
Sbjct: 1052 PDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREI 1111

Query: 328  LKDMNSKGVAPN 339
               M   G+A +
Sbjct: 1112 FDQMRRDGLAAD 1123



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 94   EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
            + ++  Y+S++  L K    +    LV       +  +  T+  +M  Y +  ++++A  
Sbjct: 911  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 970

Query: 153  TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
                M   G+   +  FN L++  C    +   +++ + M  + I P++ T++ L++ + 
Sbjct: 971  ILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYC 1030

Query: 212  KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               NL  A  I+++M   G  PD  TY  +V   C A  + EA  + + M       +  
Sbjct: 1031 IRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVS 1090

Query: 272  IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
             YSVL+  +    +  +A + F +M ++G+ AD  +++
Sbjct: 1091 TYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 164/336 (48%), Gaps = 8/336 (2%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M +  T+  I+  Y    + +EA+ T   M+  GV  N+  ++ L++ LCK+    +A++
Sbjct: 241 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 300

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           IFD M  R + PD  TY  LL+G  K+  +  + ++F  MV  G  PDI+TY  ++D  C
Sbjct: 301 IFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 360

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
            AG++DEA  ++ SM S   +P    Y  L++ Y   +R++DA+  F EM  +G+  ++ 
Sbjct: 361 LAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNII 420

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            YN ++       +      +   +   G      T NIIL+GL     TDEA R+F+  
Sbjct: 421 TYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQ-- 478

Query: 367 IKLCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
             LC  D      T+ +MI    + G +++A  ++        +P + T+S++   L ++
Sbjct: 479 -NLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQ 537

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           G + +   L   M E G          + + L++ G
Sbjct: 538 GSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 573



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 165/337 (48%), Gaps = 18/337 (5%)

Query: 150 AVYTFNVMQKYG---VTQNLAAFNGLLSALCKSKNVRKA-QEIFDCMKDRFIPDSKTYSI 205
           AV  +N M + G   VT  +  +  L+   C++  +      + + +K  F  D+ T++ 
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 206 LLEGWGKDPNLPRAREI-FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM--D 262
           LL+G   D     A +I  R M + GC PD+ +Y  ++  LC   R  EAL ++  M  D
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 263 STVCRPTSFI-YSVLVHTY---GVENRI-EDAVDTFLE----MEKNGILADVAMYNALIG 313
                P   + Y+ +++ +   G++ ++   A+D  +E    M KNG++ D   YN+++ 
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 252

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
            +C + + K     LK M S GV PN  T + ++N L   G + EA ++F  M K   E 
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           D  TY  +++  C+ G + ++ K++  M      P + T++ LI+G C  G + ++  LL
Sbjct: 313 DIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 372

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             M+  G++P   T+G L     +  R +D L   +E
Sbjct: 373 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKE 409



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 155/346 (44%), Gaps = 12/346 (3%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK--------SKNVRKAQEIFDCM-K 193
           R Q+  E ++     +  G   ++ ++N +L+   K        ++ + KA E+ + M K
Sbjct: 178 RSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVK 237

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
           +  +PD  TY+ +L G+        A    ++M   G  P++VTY  +++ LCK GR  E
Sbjct: 238 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 297

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           A  I  SM      P    Y  L+  +  E R+ ++   F  M + G+  D+  YN LI 
Sbjct: 298 ARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLID 357

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEA 372
             C A K     ++L  M S GV P+  T   ++NG       D+A  +F+ M+      
Sbjct: 358 GCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSP 417

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  TY ++++          A +++  +        + T++++++GLC   +  ++  + 
Sbjct: 418 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 477

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLK--FLQEKMNLLVKE 476
           +++    ++    TF  +   L+K GR D  K  F     N LV +
Sbjct: 478 QNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 523



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 137/309 (44%), Gaps = 39/309 (12%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQK 146
           +    E +V  Y S++  L K  +      + ++M TKR L  ++ T+  +++ + +  +
Sbjct: 271 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM-TKRGLEPDIATYRTLLQGHCKEGR 329

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           V E+   F++M + GV  ++  +N L+   C +  + +A ++   M    + PD  TY  
Sbjct: 330 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 389

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL-------------------- 245
           L+ G+ +   +  A  +F+EMV +G +P+I+TY I++  L                    
Sbjct: 390 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 449

Query: 246 ---------------CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
                          CK    DEAL + +++  T  +  +  +++++       R+++A 
Sbjct: 450 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 509

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           D F     NG++ DV  Y+ +     +    + +  +   M   G + +SR  N I+  L
Sbjct: 510 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 569

Query: 351 IGRGETDEA 359
           + RG+   A
Sbjct: 570 LQRGDITRA 578



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 30/249 (12%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P + TY I++   C+AGR+D     + ++     R  +  ++ L+     + R  DA+D 
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 293 FLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLK---DMNSKGVAPNSRTCNIILN 348
            L  M + G + DV  YN L+   C  N+ +    +L    D    G  P+  + N +LN
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           G    G                        +  K+  Q   ++KA +V   M     +P 
Sbjct: 210 GFFKEG------------------------IQTKLTAQA--MDKAMEVLNTMVKNGVMPD 243

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
             T++ +++G C  G   ++   L+ M   G+ P+  T+  L   L K GR    + + +
Sbjct: 244 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 303

Query: 469 KMNLLVKEP 477
            M     EP
Sbjct: 304 SMTKRGLEP 312


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 157/313 (50%), Gaps = 2/313 (0%)

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSK 201
           + +++EEA+  F   ++ GV  ++  ++ L+ A  K+    KA E+F  M K   +PD+ 
Sbjct: 312 KSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTV 371

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
            Y++L+   GK   +  A E+  +M   G  PD  TY I++DVL   GR ++A      M
Sbjct: 372 VYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMM 431

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
                 P    Y+ L++      R ++A D F EM+ N  + D+  +  LI    KA + 
Sbjct: 432 KRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRM 491

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMM 380
           ++       +   G APNS   N +++G    G+ D+ Y +F+ MI+  C  D+ TYT++
Sbjct: 492 EDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTIL 551

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +  F + G    A ++ + M  +   P++ T++VLI  L   G V D+  L ++MI KG 
Sbjct: 552 VLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGF 611

Query: 441 RPSGETFGKLRKL 453
            P  +T+  L  L
Sbjct: 612 NPDMQTYSALPNL 624



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 166/365 (45%), Gaps = 6/365 (1%)

Query: 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           L  +RQ + +   + A    R  +  T+ I++  + R  ++ E      + +  G   + 
Sbjct: 209 LGMLRQARRLLHHMTAHACAR--DAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSA 266

Query: 167 AAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +N ++    +   + +A ++F+  M    +PD  TY++L+    K   L  A  +F+E
Sbjct: 267 VNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQE 325

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
               G   D+ TY  ++D   KAGR  +AL +  +M    C P + +Y+VL+   G + +
Sbjct: 326 AEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGK 385

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
           +++A++   +M + GI+ D   YN +I       +++  Y     M  +  +P+  T N 
Sbjct: 386 VDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNT 445

Query: 346 ILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +LNGL     TDEA  +F  M    C  D  T+  +I    + G +E A +    +    
Sbjct: 446 LLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMG 505

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-L 463
             P+ + ++ LI+G C  G V     L +DMIE    P   T+  L     + G   + +
Sbjct: 506 HAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAM 565

Query: 464 KFLQE 468
           + LQE
Sbjct: 566 ELLQE 570



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 168/376 (44%), Gaps = 12/376 (3%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTK-----RMLNVETFCIIMRKYARVQKVEEAV 151
           V AY+++I    K        D+   ++ +       ++ +T  I + K +R     +A+
Sbjct: 125 VVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRAT---DAL 181

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGW 210
             F  M   G+  ++   N L+   C+   +R+A+ +   M       D+ TY IL+   
Sbjct: 182 AVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAH 241

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            +   +             GC    V Y  ++    + GR+ EA  + +S  +    P  
Sbjct: 242 CRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDV 301

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           F Y++L+       ++E+A+  F E E+ G++ DV  Y+ L+ AF KA +      V  +
Sbjct: 302 FTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYN 360

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGE 389
           M   G  P++   N++++ L  +G+ DEA  +   M  K    D  TY ++I +    G 
Sbjct: 361 MQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGR 420

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
            EKA+  +  MK ++  P + T++ L+NGL       ++C L ++M      P   TFG 
Sbjct: 421 YEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGT 480

Query: 450 LRKLLIKEGR-EDVLK 464
           L   L K GR ED L+
Sbjct: 481 LIDTLAKAGRMEDALE 496



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 172/376 (45%), Gaps = 7/376 (1%)

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKY 160
           +M++ + K+ + +++ +L+  +R K +   E  C   ++ + R   ++ A+   + M++ 
Sbjct: 23  AMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRG 82

Query: 161 GVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILLEGWGKDPNLP 217
              Q +  AF   +  LC+ + V +A  +FD M++     PD   Y+ L+ G+ K  +  
Sbjct: 83  NFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGD 142

Query: 218 RAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
           RA ++FR +   G C P+ V++  +V  LCK  R  +AL + + M     +    + + L
Sbjct: 143 RALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTL 202

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H       +  A      M  +    D   Y  L+ A C+A +   V   ++     G 
Sbjct: 203 IHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGC 262

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGELEKAFK 395
           A ++   N I+ G I  G   EA ++F   M K    D  TY ++I + C+  +LE+A  
Sbjct: 263 ALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIAL-CKSKQLEEALT 321

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +++  +    +  + T+S L++     G  + +  +  +M + G  P    +  L   L 
Sbjct: 322 LFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLG 381

Query: 456 KEGREDVLKFLQEKMN 471
           K+G+ D    L E MN
Sbjct: 382 KQGKVDEALELLEDMN 397



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 39/280 (13%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGR---------------------------- 250
           A   ++ ++  G   D  T   MV  +CK GR                            
Sbjct: 2   ALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQ 61

Query: 251 -------VDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
                  +D A+G++  M     C+P +  ++  +H      R+E A+  F +M +    
Sbjct: 62  AFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDC 121

Query: 303 A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAY 360
           A DV  YN LI  +CKA        + + +  +G   PN+ + + ++  L       +A 
Sbjct: 122 APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDAL 181

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            VF+ M+    +AD +    +I   C+ G L +A ++  +M          T+ +L+N  
Sbjct: 182 AVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAH 241

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           C  G + +    +E     G   S   +  + +  I+ GR
Sbjct: 242 CRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGR 281



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 5/192 (2%)

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+ T+  + K G+  D     A++   CK  + + +  +L ++  KGV  +  TC   + 
Sbjct: 2   ALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQ 61

Query: 349 GLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RF 405
                G+ D A  +   M +   C+ D   +T  +   C+   +E+A  ++  M+     
Sbjct: 62  AFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDC 121

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IRPSGETFGKLRKLLIKEGRE-DVL 463
            P +  ++ LI G C  G    +  +   + ++G  +P+  +F  L   L K  R  D L
Sbjct: 122 APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDAL 181

Query: 464 KFLQEKMNLLVK 475
              QE +   +K
Sbjct: 182 AVFQEMLGAGLK 193


>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 168/377 (44%), Gaps = 4/377 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + +L+   + V+ E V  VL     +   +  FF WA    +Y  +   Y  + +SLA  
Sbjct: 65  ERSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWARSNPSYTPTSMEYEELAKSLASH 124

Query: 111 RQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN-VMQKYGVTQNLAA 168
           ++Y+ MW ++  M+   + ++ ET C I+ +Y +   V++AV  FN V +  G  Q +  
Sbjct: 125 KKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDV 184

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N LL ALC  K    A  +   M +    PD +TY+IL+ GW     +  A+E   EM 
Sbjct: 185 YNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMS 244

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
             G NP      ++++ L  AG ++ A  IV  M      P    ++ L+        +E
Sbjct: 245 RKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVE 304

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
             ++ +    K G+  D+  Y  LI A  K  K    +R+L +    G  P       I+
Sbjct: 305 FCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPII 364

Query: 348 NGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
            G+   G  D+A+  F  M +K    +   YTM+I M  +GG+   A      M     +
Sbjct: 365 KGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLV 424

Query: 407 PSMHTFSVLINGLCDKG 423
           P    F ++ +GL + G
Sbjct: 425 PISRCFDMVTDGLKNSG 441



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 146/323 (45%), Gaps = 9/323 (2%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLA 108
           D +LD SG     E +  ++E++   G +  A   F    K    + +V  Y++++ +L 
Sbjct: 139 DLSLDISG-----ETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALC 193

Query: 109 KIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
            ++ +   + L+  M  K +  +  T+ I++  +    K++EA    + M + G      
Sbjct: 194 DVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPAR 253

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
             + L+  L  +  +  A+EI D M K  F+PD  T++ L+E   K   +    E++   
Sbjct: 254 GRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEMYYTA 313

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              G   DI TY  ++  + K G++DEA  ++ +      +P   +Y+ ++         
Sbjct: 314 CKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMF 373

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           +DA   F +M+      +  +Y  LI    +  KF +    L +M   G+ P SR  +++
Sbjct: 374 DDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMV 433

Query: 347 LNGLIGRGETDEAYRVFRRMIKL 369
            +GL   G+ D A R+ +  ++L
Sbjct: 434 TDGLKNSGKHDLAMRIEQLEVQL 456



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 126/295 (42%), Gaps = 5/295 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMV 227
           +  L  +L   K      +I   MKD  +  S +T   ++E +GK+ ++ +A E+F  + 
Sbjct: 114 YEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVP 173

Query: 228 DT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            T GC   +  Y  ++  LC       A  +++ M     +P    Y++LV+ +    ++
Sbjct: 174 KTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKM 233

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A +   EM + G        + LI     A   ++   ++  M   G  P+  T N +
Sbjct: 234 KEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTL 293

Query: 347 LNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  +   GE +    ++    KL  C  D DTY  +I    + G++++AF++        
Sbjct: 294 IEAISKSGEVEFCIEMYYTACKLGLC-VDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDG 352

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             P    ++ +I G+C  G+  D+     DM  K   P+   +  L  +  + G+
Sbjct: 353 HKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK 407



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 2/196 (1%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P  + Y  +   L    + +    I+K M       +      ++  YG    ++ AV+
Sbjct: 108 TPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVE 167

Query: 292 TFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
            F  + K  G    V +YNAL+ A C    F   Y +++ M  KG+ P+ RT  I++NG 
Sbjct: 168 LFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGW 227

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G+  EA      M  K     A    ++I+     G LE A ++   M    F+P +
Sbjct: 228 CSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDI 287

Query: 410 HTFSVLINGLCDKGIV 425
            TF+ LI  +   G V
Sbjct: 288 LTFNTLIEAISKSGEV 303



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 6/206 (2%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM-YNALIGAFCKANKFKNVYRV 327
           + F++ VL  T    N   D++  F     N      +M Y  L  +     K+++++++
Sbjct: 77  SEFVFRVLRATSRSAN---DSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKI 133

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFC 385
           LK M    +  +  T   I+      G  D+A  +F  + K   C+   D Y  ++   C
Sbjct: 134 LKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALC 193

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
                  A+ + + M  K   P   T+++L+NG C  G + ++   L++M  KG  P   
Sbjct: 194 DVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPAR 253

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471
               L + L+  G  +  K + +KM 
Sbjct: 254 GRDLLIEGLLNAGYLESAKEIVDKMT 279


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 173/348 (49%), Gaps = 3/348 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+S+ K +     +DL   M +KR+  +V T+  ++  +  V K++ AV  F
Sbjct: 197 NVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLF 256

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
           N M    +  N+  F+ L+   CK   VR+A+ +   M  + +  D  TY+ L++G+   
Sbjct: 257 NRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLV 316

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + +A+ +F  M   G  PD+ +Y IM++  CK   VDEA+ + + M      P    Y
Sbjct: 317 KQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTY 376

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + LV       R   A++   EM   G  +++  YN+++ A CK N       +L  +  
Sbjct: 377 NSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKE 436

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
           KG+ P+  T  +++NGL   G  D+A +VF  + +K    +  TYT +I  FC  G  ++
Sbjct: 437 KGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDE 496

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
              +   MK    IP+  T+ +LI+ L +K     +  LL +MI +G+
Sbjct: 497 GLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 190/382 (49%), Gaps = 4/382 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           Q ++    +Y ++I  L ++ + +    L+  +  K +  NV  +  I+    + + V +
Sbjct: 157 QGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVND 216

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLE 208
           A   +  M    ++ ++  ++ L+S  C    ++ A ++F+ M  D   P+  T+SIL++
Sbjct: 217 AFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILID 276

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ K+  +  A+ +   M+      D+VTY  ++D  C   +V++A  +   M      P
Sbjct: 277 GFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTP 336

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             + YS++++ +     +++A+  F EM    I  +V  YN+L+   CK+ +      ++
Sbjct: 337 DVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELV 396

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
            +M+ +G   N  T N IL+ +      D+A  +  ++  K  + D  TYT++I   C+ 
Sbjct: 397 DEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKV 456

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G L+ A KV++ + +K + P+++T++ LING C+KG   +   +L  M + G  P+  T+
Sbjct: 457 GRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITY 516

Query: 448 GKL-RKLLIKEGREDVLKFLQE 468
             L   L  K+  +   K L+E
Sbjct: 517 EILIHSLFEKDENDKAEKLLRE 538



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 166/340 (48%), Gaps = 2/340 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           F  I+    + ++ + A+     M+  G+  +    N L++   +  +++ +  +F   +
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKIL 120

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K  + PD+ T++IL++G      + +A     ++V  G   D V+YG +++ LC+ G   
Sbjct: 121 KKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETK 180

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A+ +++ +D  + RP   +YS ++ +   +  + DA D + EM    I  DV  Y++LI
Sbjct: 181 AAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLI 240

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             FC   K K    +   M S  + PN  T +I+++G    G+  EA  V   M+K   +
Sbjct: 241 SGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVK 300

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY  ++  +C   ++ KA  ++  M  +   P + ++S++ING C   +V ++  L
Sbjct: 301 LDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKL 360

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            E+M  K I P+  T+  L   L K GR      L ++M+
Sbjct: 361 FEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMH 400



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 158/313 (50%), Gaps = 5/313 (1%)

Query: 60  RVSPEIV--EDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIM 116
           R+SP++V    ++  F   G L +    +      N   +V  +  +I+   K  + +  
Sbjct: 228 RISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREA 287

Query: 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
            +++  M  K + L+V T+  +M  Y  V++V +A   FNVM + GVT ++ +++ +++ 
Sbjct: 288 KNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMING 347

Query: 176 LCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            CK K V +A ++F+ M   +  P+  TY+ L++G  K      A E+  EM D G   +
Sbjct: 348 FCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSN 407

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           I+TY  ++D +CK   VD+A+ ++  +     +P  F Y+VL++      R++DA   F 
Sbjct: 408 IITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFE 467

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           ++   G   ++  Y +LI  FC    F     +L  M   G  PN+ T  I+++ L  + 
Sbjct: 468 DLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKD 527

Query: 355 ETDEAYRVFRRMI 367
           E D+A ++ R MI
Sbjct: 528 ENDKAEKLLREMI 540



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 169/380 (44%), Gaps = 43/380 (11%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE----- 187
           TF I+++      +V +A+Y  + +   G   +  ++  L++ LC+    + A +     
Sbjct: 130 TFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV 189

Query: 188 --------------IFDCM-KDRFI----------------PDSKTYSILLEGWGKDPNL 216
                         I D M KD+ +                PD  TYS L+ G+     L
Sbjct: 190 DGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKL 249

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A ++F  M+    NP++ T+ I++D  CK G+V EA  ++  M     +     Y+ L
Sbjct: 250 KYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSL 309

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  Y +  ++  A   F  M + G+  DV  Y+ +I  FCK        ++ ++M+ K +
Sbjct: 310 MDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQI 369

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFK 395
            PN  T N +++GL   G T  A  +   M    + ++  TY  ++   C+   ++KA  
Sbjct: 370 FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +   +K K   P + T++VLINGLC  G + D+  + ED++ KG  P+  T+  L     
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC 489

Query: 456 KEGREDVLKFLQEKMNLLVK 475
            +G      F  E + +L K
Sbjct: 490 NKG------FFDEGLAMLSK 503



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 2/215 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           Q+     V +Y  MI    KI+       L   M  K++  NV T+  ++    +  +  
Sbjct: 331 QRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTS 390

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A+   + M   G   N+  +N +L A+CK+ +V KA  +   +K++ I PD  TY++L+
Sbjct: 391 CALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLI 450

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K   L  A+++F +++  G +P+I TY  +++  C  G  DE L ++  M    C 
Sbjct: 451 NGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI 510

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           P +  Y +L+H+   ++  + A     EM   G+L
Sbjct: 511 PNAITYEILIHSLFEKDENDKAEKLLREMIARGLL 545



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 121/259 (46%), Gaps = 1/259 (0%)

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K+  IP +  +  +L    K      A  + ++M   G  PD +T  ++++   + G + 
Sbjct: 51  KNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIK 110

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            +  +   +      P +  +++L+    ++  +  A+    ++   G   D   Y  LI
Sbjct: 111 FSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLI 170

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
              C+  + K   ++L+ ++ K V PN    + I++ +      ++A+ ++  M+ K   
Sbjct: 171 NGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRIS 230

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY+ +I  FC  G+L+ A  ++  M      P+++TFS+LI+G C +G V ++  +
Sbjct: 231 PDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNV 290

Query: 432 LEDMIEKGIRPSGETFGKL 450
           L  M++K ++    T+  L
Sbjct: 291 LAVMMKKNVKLDVVTYNSL 309


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 158/316 (50%), Gaps = 2/316 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  I+ +  + +++++A+ T   M   G+  +   +N +LS LC+ + V +A+ +F+ M
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 70

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            K R  P+  TY+ L+ G  K   +  A E+F+EM   G  P  V+Y  ++D  CK   +
Sbjct: 71  VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDL 130

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  +   M  + C P    Y+ L+       +++ A +    M K G+  +VA Y+ L
Sbjct: 131 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 190

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  FCK  +    +++L+ M ++G+AP   T NI+LN L    + ++A+++FR M  + C
Sbjct: 191 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRC 250

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
                TY  +++  C   +L+ A +++  M  K   P   T+  L  GL   G V ++  
Sbjct: 251 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQE 310

Query: 431 LLEDMIEKGIRPSGET 446
           L+E M      P G +
Sbjct: 311 LMEKMKLTKRNPFGRS 326



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 3/324 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M +Y     L  +  ++  LCK+K +  A    + M  R I PD+  Y+ +L G  ++  
Sbjct: 1   MARYAPPDALT-YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEK 59

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  AR +F +MV    NP++VTY  +++ LCKA R++ A  + K M      PT   Y+ 
Sbjct: 60  VEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  +  +  +  A D F +M ++  + +V  Y  LI    K+ K +    VL  M  KG
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 179

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGELEKAF 394
           V PN  T + +++G       DEA+++  +M+    A    TY +++   C+  +LE AF
Sbjct: 180 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAF 239

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K+++ M  +R  P++ T++ L+  LC    +  +  L  +MI KG  P   T+  L   L
Sbjct: 240 KLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGL 299

Query: 455 IKEGREDVLKFLQEKMNLLVKEPL 478
            + G+    + L EKM L  + P 
Sbjct: 300 TRAGKVHEAQELMEKMKLTKRNPF 323



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 1/238 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    +  ++E A   F  M   G      ++N L+   CK K++  A+++F
Sbjct: 78  NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVF 137

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M +   +P+  TY+ L++G  K   +  A E+   MV  G  P++ TY  ++D  CK 
Sbjct: 138 DKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKV 197

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            RVDEA  +++ M +    PT   Y++L+++    +++EDA   F  M +      V  Y
Sbjct: 198 RRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTY 257

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           N L+ A C   +    +R+  +M +KG  P++ T + +  GL   G+  EA  +  +M
Sbjct: 258 NTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 2/209 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
           + Y  +  +Y+++I+   K +      D+ + M R+  + NV T+  ++   ++  KV+ 
Sbjct: 108 KGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQA 167

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A    + M K GVT N+A ++ L+   CK + V +A ++ + M  + I P   TY+ILL 
Sbjct: 168 AAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLN 227

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
              +   L  A ++FR M    C+P +VTY  ++  LC   ++D A  +   M +  C P
Sbjct: 228 SLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPP 287

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEME 297
            +  Y  L        ++ +A +   +M+
Sbjct: 288 DAITYDTLAWGLTRAGKVHEAQELMEKMK 316


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 180/398 (45%), Gaps = 37/398 (9%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q     +V AY+S+I    K         L   M  K +     TF  ++  Y +  +V+
Sbjct: 428 QDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQ 487

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A   +N M   G+T N+  F  L+S LC +  + +A E+FD + +R I P   TY++L+
Sbjct: 488 KAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLI 547

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           EG+ +D  + +A E+  +M   G  PD  TY  ++  LC  GRV +A   +  +     +
Sbjct: 548 EGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVK 607

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
                YS L+H Y  E R+ +A+    EM + GI  D+  +  LI    K    K  + +
Sbjct: 608 LNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDL 667

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           LKDM+ +G+ P++     +++     G   +A+  +  M+ + C  +  TYT ++   C+
Sbjct: 668 LKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCK 727

Query: 387 GGELEKAFKVWKYMK----------------------------------LKRFIPSMHTF 412
            GE+++A  ++K M+                                  LK  + +  T 
Sbjct: 728 AGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTH 787

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +++I G C  G   ++  +L +M E GI P   T+  L
Sbjct: 788 NIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTL 825



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 185/381 (48%), Gaps = 10/381 (2%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYAR 143
           +W E    ++ S+  Y+ +I  L K  +     ++  ++  K +  +V T+C ++  + R
Sbjct: 249 RWME-ANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCR 307

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKT 202
           +Q+ E  +   + M + G +   AA +GL+  L K   +  A E +    +  F+P+   
Sbjct: 308 LQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFV 367

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L+    K  +L +A  ++  M      P+ +TY I++D  C++GR+D A+     M 
Sbjct: 368 YNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMI 427

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                 T + Y+ L++       +  A   F+EM   G+      + +LI  +CK  + +
Sbjct: 428 QDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQ 487

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYT 378
             +++   M   G+ PN  T   +++GL    +  EA  +F     R IK  E    TY 
Sbjct: 488 KAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEV---TYN 544

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           ++I+ +C+ G+++KAF++ + M  K  +P  +T+  LI+GLC  G VS +   ++D+ ++
Sbjct: 545 VLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQ 604

Query: 439 GIRPSGETFGKLRKLLIKEGR 459
            ++ +   +  L     +EGR
Sbjct: 605 NVKLNEMCYSALLHGYCQEGR 625



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 187/399 (46%), Gaps = 42/399 (10%)

Query: 100 YHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           Y+++I SL K   + + ++++  ++ M  +   N  T+ I++  + R  +++ A+  F+ 
Sbjct: 368 YNALINSLCKGGDLDKAELLYSNMSLMNLRP--NGITYSILIDSFCRSGRLDVAISYFDR 425

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M + G+ + + A+N L++  CK  ++  A+ +F  M ++ + P + T++ L+ G+ KD  
Sbjct: 426 MIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQ 485

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           + +A +++ +M+D G  P++ T+  ++  LC   ++ EA  +   +     +PT   Y+V
Sbjct: 486 VQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNV 545

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y  + +I+ A +   +M + G++ D   Y  LI   C   +       + D++ + 
Sbjct: 546 LIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQN 605

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-------LCEA---------------- 372
           V  N    + +L+G    G   EA      MI+       +C A                
Sbjct: 606 VKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFF 665

Query: 373 -------------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
                        D   YT MI  + + G  +KAF+ W  M  +   P++ T++ L+NGL
Sbjct: 666 DLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGL 725

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           C  G +  + +L + M    + P+  T+G     L KEG
Sbjct: 726 CKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEG 764



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 158/349 (45%), Gaps = 2/349 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTF 154
           +V  + ++I  L    +     +L + +  +++   E T+ +++  Y R  K+++A    
Sbjct: 504 NVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELL 563

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKD 213
             M + G+  +   +  L+S LC +  V KA++  D +  + +  +   YS LL G+ ++
Sbjct: 564 EDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQE 623

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A     EM+  G N D+V + +++D   K         ++K M     RP + IY
Sbjct: 624 GRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIY 683

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++ TY  E   + A + +  M       +V  Y AL+   CKA +      + K M +
Sbjct: 684 TSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQA 743

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393
             V PNS T    L+ L   G   EA  +   M+K   A+  T+ ++I+ FC+ G   +A
Sbjct: 744 ANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEA 803

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            KV   M      P   T+S LI   C  G V  S  L + M+ +G+ P
Sbjct: 804 TKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEP 852



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 124/550 (22%), Positives = 228/550 (41%), Gaps = 99/550 (18%)

Query: 17  SFLRRYNSSEPSTEALDAAKSISKIM-----LSSPKVVLDTALDQSGIRVSPEIVEDVLE 71
           S  R +++S+P  E  +  + +S +        S KV  + A   S +R  P  VE VL 
Sbjct: 22  SLHRHFSASKPDEE--NDCRFVSLLCDIVRGKQSWKVAFNDASISSTLR--PHHVEQVLM 77

Query: 72  KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK----- 126
              +   LA  FF +    +N  HS  +Y  M+ +L   R +     L++ +  +     
Sbjct: 78  NTLDDAKLALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPK 137

Query: 127 -------------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
                        +  +   F ++++ Y    ++ +AV    +M    +   +   + LL
Sbjct: 138 CVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALL 197

Query: 174 SALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           + L K +      E+FD   +  + PD  T S ++    +  +  RA+E  R M   G +
Sbjct: 198 NGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFD 257

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDST---------------VCR---------- 267
             IVTY +++  LCK  RV EA+ + +S+                   CR          
Sbjct: 258 LSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQL 317

Query: 268 ----------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
                     PT    S LV     + +I+DA +  +++ + G + ++ +YNALI + CK
Sbjct: 318 MDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCK 377

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI---------- 367
                    +  +M+   + PN  T +I+++     G  D A   F RMI          
Sbjct: 378 GGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYA 437

Query: 368 --------------------------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
                                     K  E  A T+T +I  +C+  +++KAFK++  M 
Sbjct: 438 YNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMI 497

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
                P+++TF+ LI+GLC    ++++  L ++++E+ I+P+  T+  L +   ++G+ D
Sbjct: 498 DNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKID 557

Query: 462 VLKFLQEKMN 471
               L E M+
Sbjct: 558 KAFELLEDMH 567



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 182/401 (45%), Gaps = 38/401 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDL----VNA----------------------MRTKRM-- 128
           VR   +++  L K+R++  +W+L    VNA                      +R K    
Sbjct: 190 VRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIR 249

Query: 129 --------LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
                   L++ T+ +++    +  +V EAV     +   G+  ++  +  L+   C+ +
Sbjct: 250 WMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQ 309

Query: 181 NVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                 ++ D M +  F P     S L++G  K   +  A E+  ++   G  P++  Y 
Sbjct: 310 QFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYN 369

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +++ LCK G +D+A  +  +M     RP    YS+L+ ++    R++ A+  F  M ++
Sbjct: 370 ALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQD 429

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           GI   V  YN+LI   CK         +  +M +KGV P + T   +++G     +  +A
Sbjct: 430 GIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKA 489

Query: 360 YRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
           ++++ +MI      +  T+T +I   C   ++ +A +++  +  ++  P+  T++VLI G
Sbjct: 490 FKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEG 549

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            C  G +  +  LLEDM +KG+ P   T+  L   L   GR
Sbjct: 550 YCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGR 590



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 2/213 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPN 215
           M   G+  +   +  ++    K  + +KA E +D M  +   P+  TY+ L+ G  K   
Sbjct: 671 MHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGE 730

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           + RA  +F+ M      P+ +TYG  +D L K G + EA+G+  +M   +   T   +++
Sbjct: 731 MDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANT-VTHNI 789

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++  +    R  +A     EM +NGI  D   Y+ LI  +C++       ++   M ++G
Sbjct: 790 IIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRG 849

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + P+    N+++ G    GE D+A+ +   M++
Sbjct: 850 LEPDLVAYNLLIYGCCVNGELDKAFELRDDMLR 882



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 5/242 (2%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +I+   K    +  +DL+  M  +  R  NV  +  ++  Y++    ++A   +++M   
Sbjct: 651 LIDGALKQPDRKTFFDLLKDMHDQGLRPDNV-IYTSMIDTYSKEGSFKKAFECWDLMVTE 709

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRA 219
               N+  +  L++ LCK+  + +A  +F  M+   +P +S TY   L+   K+ N+  A
Sbjct: 710 ECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEA 769

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             +   M+  G   + VT+ I++   CK GR  EA  ++  M      P    YS L++ 
Sbjct: 770 IGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYE 828

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           Y     +  +V  +  M   G+  D+  YN LI   C   +    + +  DM  +G+ P+
Sbjct: 829 YCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888

Query: 340 SR 341
           ++
Sbjct: 889 NK 890



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y SMI++ +K   ++  ++  + M T+    NV T+  +M    +  +++ A   F  MQ
Sbjct: 683 YTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQ 742

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
              V  N   +   L  L K  N+++A  +   M    + ++ T++I++ G+ K      
Sbjct: 743 AANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHE 802

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A ++  EM + G  PD VTY  ++   C++G V  ++ +  +M +    P    Y++L++
Sbjct: 803 ATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIY 862

Query: 279 TYGVENRIEDAVDTFLEMEKNGILAD 304
              V   ++ A +   +M + GI+ D
Sbjct: 863 GCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 37/249 (14%)

Query: 266 CRPTSFI-YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
           C+ +S + +++LV  Y + +RI DAV     M  N +L +V   +AL+    K  KF  V
Sbjct: 150 CKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITV 209

Query: 325 YRVLKDMNSKGVAPNSRTC-----------------------------------NIILNG 349
           + +  +  + GV P+  TC                                   N++++G
Sbjct: 210 WELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHG 269

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L       EA  V R +  K   AD  TY  ++  FC+  + E   ++   M    F P+
Sbjct: 270 LCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPT 329

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
               S L++GL  +G + D+  L+  +   G  P+   +  L   L K G  D  + L  
Sbjct: 330 EAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYS 389

Query: 469 KMNLLVKEP 477
            M+L+   P
Sbjct: 390 NMSLMNLRP 398


>gi|298204688|emb|CBI25186.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 193/414 (46%), Gaps = 13/414 (3%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHS 102
           LSS   V+   LD SG+  + E+V   +   R    LA+  F W EK     +S R    
Sbjct: 92  LSSEAEVM-AVLDGSGVEPNQELVYWAIWGLREDWRLAYWVFNWGEKWGC--NSERTRGL 148

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           +I  L   +++ + W L+  +    +       I++ +Y       +A+ TF++M+K+ +
Sbjct: 149 VIWILGNCKKFGVAWCLIRELHRSSVDTRRAMLIMIDRYTAANDPCKAIKTFHIMEKFRL 208

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-DPNLPRARE 221
           + +  AF  LL+ALCK  NV  A+E+    K  F  +++ ++I+L GW     ++  A+ 
Sbjct: 209 SPDQEAFYTLLTALCKHGNVEDAEELMFQNKKLFPLETEGFNIILNGWSNVSLDIFEAKR 268

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           I+REM      P+  TY +M+    K G + ++L +   M      P   +Y+ L++   
Sbjct: 269 IWREMSKCCIVPNATTYTLMISCFSKFGNLFDSLRLFDDMKKRGWIPGLEVYNSLIYVLT 328

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            EN + +A+    ++++ G+  D A YN +I   CKA K +    +L  M  + + P + 
Sbjct: 329 HENCLTEALKILGKIKEMGLQLDSASYNCMIRPLCKAKKLEEARTILAAMIGENLGPTTE 388

Query: 342 TCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T +  L G       +E + V + +       + DT+ +++    +  + E A K+W  M
Sbjct: 389 TYHAFLEG----ASYEETFEVLKNLRTAGFGPNGDTFLLILDNLFKLDQPENALKIWVEM 444

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           K    +P    + VLI GL   G +  +  L  +M  KG         KL+KLL
Sbjct: 445 KQFDVVPGSEHYKVLIEGLTKFGWLVKARELYAEMRSKGFLDD----PKLKKLL 494


>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
 gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 191/392 (48%), Gaps = 17/392 (4%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           + +    V   L  + N    A  FF W E +  ++H+   Y+ MI+ L K  ++ + WD
Sbjct: 42  LNLDSSTVFQTLSCYNNDWKRALDFFNWVETESQFQHTTETYNRMIDILGKFFEFDLSWD 101

Query: 119 LVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTF-NVMQKYGVTQNLAAFNGLLSA 175
           L+  MR       N  TF ++  +Y     V EAV  + + ++++G+ ++  ++  L+ A
Sbjct: 102 LIQRMRNNPFSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLKEFGL-KDETSYCILVDA 160

Query: 176 LCKSKNVRKAQEIFDCMKDRFIPD-----SKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LC+ K+V +A E+  C  +          +K Y+++L GW K     + RE + EM    
Sbjct: 161 LCEYKHVIEAHEL--CFGNNNNSINVRNITKIYNMILRGWFKMGWWGKCREFWEEMDRKE 218

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
              D+ +Y I +D+LCK+G+  +A+ + K M S   +     Y+ +++  G+   ++  +
Sbjct: 219 VCKDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEGVDFVL 278

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             + EM + G   +V   N +I   C+  + K  Y++L +M    +AP+  T +     L
Sbjct: 279 RVYREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYHCFFRCL 338

Query: 351 IGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
               +  E   +F +MI+  +C    DTY M+++ F + G L   F VWK M+     P 
Sbjct: 339 ---EKPKEILCLFDQMIENGVC-PRMDTYVMLMRKFGRWGFLRPVFLVWKKMEKLGCSPD 394

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
              ++ LI+ L  KG+V  +    E+M+ KG+
Sbjct: 395 EFAYNALIDALIQKGMVDMARKYDEEMMAKGL 426



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 33/218 (15%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPN 215
           M +  V ++L +++  +  LCKS    KA +++  MK + I  D   Y+ ++   G    
Sbjct: 214 MDRKEVCKDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEG 273

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +     ++REM + GC P++VT   ++ +LC+ GR+ EA  ++  M  +   P  F Y  
Sbjct: 274 VDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYHC 333

Query: 276 LVHTYG------------VENRIEDAVDTFL--------------------EMEKNGILA 303
                             +EN +   +DT++                    +MEK G   
Sbjct: 334 FFRCLEKPKEILCLFDQMIENGVCPRMDTYVMLMRKFGRWGFLRPVFLVWKKMEKLGCSP 393

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           D   YNALI A  +        +  ++M +KG++   R
Sbjct: 394 DEFAYNALIDALIQKGMVDMARKYDEEMMAKGLSAKPR 431


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 203/436 (46%), Gaps = 39/436 (8%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P I  +V++K  N   + F F++++  + N  HS   Y+ +  SL K   + +   + 
Sbjct: 67  LNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMF 126

Query: 121 NAMRT------KRMLN------------------------VETFCII----MRKYARVQK 146
             M++       R+L                         VE  C++    +    ++ +
Sbjct: 127 ECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDR 186

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           VE+A+  F+   ++    +   FN L+  LC      KA E+   M      PD  TY+ 
Sbjct: 187 VEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNT 246

Query: 206 LLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           L++G+ K   L +A E+F++ V +G  C+PD+VTY  M+   CKAG++ EA  ++  M  
Sbjct: 247 LIQGFCKSNELNKASEMFKD-VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLR 305

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
               PT+  ++VLV  Y     +  A +   +M   G   DV  + +LI  +C+  +   
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQ 365

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            +R+ ++MN++G+ PN+ T +I++N L       +A  +  ++  K        Y  +I 
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC+ G++ +A  + + M+ K+  P   TF++LI G C KG + ++  +   M+  G  P
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485

Query: 443 SGETFGKLRKLLIKEG 458
              T   L   L+K G
Sbjct: 486 DKITVSSLLSCLLKAG 501



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 101 HSMIESLAKIRQYQIMWDLVN-AMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           +S++ +L K+ + +    L +  +R +   + +TF I++R    V K E+A+    VM  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIF------------------------------ 189
           +G   ++  +N L+   CKS  + KA E+F                              
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMR 294

Query: 190 -------DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
                  D ++    P + T+++L++G+ K   +  A EI  +M+  GC PD+VT+  ++
Sbjct: 295 EASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLI 354

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D  C+ G+V +   + + M++    P +F YS+L++    ENR+  A +   ++    I+
Sbjct: 355 DGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII 414

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
               MYN +I  FCKA K      ++++M  K   P+  T  I++ G   +G   EA  +
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           F +M+ + C  D  T + ++    + G  ++A+ +
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 155/349 (44%), Gaps = 38/349 (10%)

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLP 217
           K  +  +   +N L  +LCK+     A ++F+CMK D   P+++    L+  + +   L 
Sbjct: 96  KLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLH 155

Query: 218 RAREIFREMVDT----------------------------------GCNPDIVTYGIMVD 243
            A  +  +  +                                    CN D  T+ I++ 
Sbjct: 156 FATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIR 214

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LC  G+ ++AL ++  M    C P    Y+ L+  +   N +  A + F +++   + +
Sbjct: 215 GLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS 274

Query: 304 -DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  Y ++I  +CKA K +    +L DM   G+ P + T N++++G    GE   A  +
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             +MI   C  D  T+T +I  +C+ G++ + F++W+ M  +   P+  T+S+LIN LC+
Sbjct: 335 RGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCN 394

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  +  +  LL  +  K I P    +  +     K G+ +    + E+M
Sbjct: 395 ENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 12/302 (3%)

Query: 57  SGIRVSPEIV--EDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           SG    P+IV    +++ F  +  L  A   FK  +        V  Y SMI    K  +
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGK 292

Query: 113 YQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
            +    L++ M R        TF +++  YA+  ++  A      M  +G   ++  F  
Sbjct: 293 MREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTS 352

Query: 172 LLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+   C+   V +   +++ M  R   P++ TYSIL+     +  L +ARE+  ++    
Sbjct: 353 LIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKD 412

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P    Y  ++D  CKAG+V+EA  IV+ M+   C+P    +++L+  + ++ R+ +AV
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-----VAPNSRTCNI 345
             F +M   G   D    ++L+    KA   K  Y  L  +  KG     V P ++T N 
Sbjct: 473 SIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKGQSNNVVPPETKTANA 531

Query: 346 IL 347
            L
Sbjct: 532 TL 533


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 185/385 (48%), Gaps = 8/385 (2%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
           +E  +  + S+I       + +    +VN M    +  +V  +  I+    +   V  A+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
             F+ M+ YG+  ++  +  L++ LC S   R A  +   M  R I PD  T++ L++ +
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAF 257

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K+     A E++ EM+     P+I TY  +++  C  G VDEA  +   M++  C P  
Sbjct: 258 VKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDV 317

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L++ +    +++DA+  F EM + G+  +   Y  LI  F +  K      V   
Sbjct: 318 VAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSH 377

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-----TYTMMIKMFC 385
           M S+GV PN RT N++L+ L   G+  +A  +F  M K  E D       TY +++   C
Sbjct: 378 MVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKR-EMDGVAPNIWTYNVLLHGLC 436

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G+LEKA  V++ M+ +     + T++++I G+C  G V ++  L   +  KG++P+  
Sbjct: 437 YNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVV 496

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
           T+  +   L +EG +     L  KM
Sbjct: 497 TYTTMISGLFREGLKHEAHVLFRKM 521



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 173/378 (45%), Gaps = 12/378 (3%)

Query: 86  WAEKQQNYEHSVR-AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYAR 143
           W     NY   +R   HS+        Q+    DL   M   R L ++  F  ++   A+
Sbjct: 33  WVRAFCNYREILRNGLHSL--------QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAK 84

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKT 202
           ++K +  +   + +Q  GV+ +L   N L++  C+S     A       MK  F PD  T
Sbjct: 85  MKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVT 144

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           ++ L+ G+     +  A  +  +MV+ G  PD+V Y  ++D LCK G V+ AL +   M+
Sbjct: 145 FTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQME 204

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           +   RP   +Y+ LV+      R  DA      M K  I  DV  +NALI AF K  KF 
Sbjct: 205 NYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFL 264

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMI 381
           +   +  +M    +APN  T   ++NG    G  DEA ++F  M  K C  D   YT +I
Sbjct: 265 DAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLI 324

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             FC+  +++ A K++  M  K    +  T++ LI G    G  + +  +   M+ +G+ 
Sbjct: 325 NGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVP 384

Query: 442 PSGETFGKLRKLLIKEGR 459
           P+  T+  L   L   G+
Sbjct: 385 PNIRTYNVLLHCLCYNGK 402



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 5/210 (2%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY S+I    K ++      +   M  K +  N  T+  +++ + +V K   A   F+
Sbjct: 317 VVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFS 376

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWG 211
            M   GV  N+  +N LL  LC +  V+KA  IF+ M+ R      P+  TY++LL G  
Sbjct: 377 HMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLC 436

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            +  L +A  +F +M     +  I+TY I++  +CKAG+V  A+ +  S+ S   +P   
Sbjct: 437 YNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVV 496

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
            Y+ ++     E    +A   F +M+++G+
Sbjct: 497 TYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 38/188 (20%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           +  +A+D F  M ++  L  +  +  L+    K  KF  V  +   +   GV+ +  TCN
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE--LEKAFKVWKYMKL 402
           +++N                                   FCQ  +  L  +F + K MKL
Sbjct: 112 LLMN----------------------------------CFCQSSQPYLASSF-LGKMMKL 136

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
             F P + TF+ LING C    + ++  ++  M+E GI+P    +  +   L K G  + 
Sbjct: 137 G-FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNY 195

Query: 463 LKFLQEKM 470
              L ++M
Sbjct: 196 ALSLFDQM 203


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 184/358 (51%), Gaps = 3/358 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           ++  +  +V  Y ++I+   K  + +   DL   M +   + N  T+ +++    +    
Sbjct: 190 REFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK 249

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSIL 206
           ++    +  MQ++GV  NL  +N +++ LCK    + A ++FD M++R +  +  TY+ L
Sbjct: 250 KQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTL 309

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  ++     A ++  +M     NP+++TY  ++D  C  G++ +AL + + + S   
Sbjct: 310 IGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGL 369

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P+   Y+VLV  +  +     A     EME+ GI      Y  LI  F +++  +   +
Sbjct: 370 SPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQ 429

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +   M   G+ P+  T +++++G   +G+ +EA R+F+ M+ K+ E +   Y  MI  +C
Sbjct: 430 LRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYC 489

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + G   +A ++++ M+ K   P++ ++S LI  LC +  + ++  L+E MI+ GI PS
Sbjct: 490 KEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPS 547



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 175/344 (50%), Gaps = 2/344 (0%)

Query: 117 WDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           W   N  + K +L+V +F I+++      ++E++      ++++G + N+  +  L+   
Sbjct: 149 WCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC 208

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           CK   + KA+++F  M K   + +  TY++L+ G  K+    +  E++ +M + G  P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNL 268

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
            TY  +++ LCK GR  +A  +   M           Y+ L+     E +  +A     +
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M+   I  ++  YN LI  FC   K      + +D+ S+G++P+  T N++++G   +G+
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGD 388

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           T  A ++ + M  +  +    TYT++I  F +   +E A ++   M+    +P +HT+SV
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSV 448

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           LI+G C KG ++++  L + M+EK + P+   +  +     KEG
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEG 492



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 165/313 (52%), Gaps = 1/313 (0%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +I+  Y + Q ++ ++Y FN M   G       FN LL+ +  S +  +    F+  K +
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK 158

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
            + D  ++ I+++G  +   + ++ ++  E+ + G +P++V Y  ++D  CK G +++A 
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +   M         + Y+VL+H        +   + + +M+++G+  ++  YN ++   
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQL 278

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADA 374
           CK  + K+ ++V  +M  +GV+ N  T N ++ GL    + +EA +V  +M   +   + 
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNL 338

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I  FC  G+L KA  + + +K +   PS+ T++VL++G C KG  S +  ++++
Sbjct: 339 ITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKE 398

Query: 435 MIEKGIRPSGETF 447
           M E+GI+PS  T+
Sbjct: 399 MEERGIKPSKVTY 411



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 134/288 (46%), Gaps = 36/288 (12%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  +M +  +  + ++A   F+ M++ GV+ N+  +N L+  LC+     +A ++ 
Sbjct: 267 NLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVM 326

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D MK   I P+  TY+ L++G+     L +A  + R++   G +P +VTY ++V   C+ 
Sbjct: 327 DQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRK 386

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G    A  +VK M+    +P+   Y++L+ T+   + +E A+     ME+ G++ DV  Y
Sbjct: 387 GDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTY 446

Query: 309 NALIGAFCKANK-------FKNV----------------------------YRVLKDMNS 333
           + LI  FC   +       FK++                             R+ +DM  
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEE 506

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381
           K +APN  + + ++  L    +  EA  +  +MI      +DT   +I
Sbjct: 507 KELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ T+  ++  +  V K+ +A+     ++  G++ +L  +N L+S  C+  +   A ++ 
Sbjct: 337 NLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMV 396

Query: 190 DCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M++R I  SK TY+IL++ + +  N+  A ++   M + G  PD+ TY +++   C  
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G+++EA  + KSM   +  P   IY+ ++  Y  E     A+  F +ME+  +  +VA Y
Sbjct: 457 GQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASY 516

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + LI   CK  K K    +++ M   G+ P+   CN     LI R +TD
Sbjct: 517 SYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICN-----LISRAKTD 560



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 117/241 (48%), Gaps = 2/241 (0%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y ++++   ++  +D ++     M      P S  ++ L+ T+ V +   +    F    
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLL-TFVVGSSSFNQWWCFFNES 155

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           K  ++ DV  +  +I   C+A + +  + +L ++   G +PN      +++G   +GE +
Sbjct: 156 KIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +A  +F  M K    A+  TYT++I    + G  ++ F++++ M+     P+++T++ ++
Sbjct: 216 KAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVM 275

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476
           N LC  G   D+  + ++M E+G+  +  T+  L   L +E + +    + ++M   V  
Sbjct: 276 NQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVIN 335

Query: 477 P 477
           P
Sbjct: 336 P 336



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 72/152 (47%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +Y  +I A+ ++    +      +M  KG  P S   N +L  ++G    ++ +  F   
Sbjct: 96  LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNES 155

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
                 D  ++ ++IK  C+ GE+EK+F +   ++   F P++  ++ LI+G C KG + 
Sbjct: 156 KIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +  L  +M + G+  +  T+  L   L K G
Sbjct: 216 KAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 178/413 (43%), Gaps = 72/413 (17%)

Query: 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           LV  M      +V T+  +MR   +  KV+EA      M   G   +   +N ++   CK
Sbjct: 268 LVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCK 327

Query: 179 SKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE------------ 225
           S  +++A E+  D +   F+PD  TY  L+ G   + ++ RA E+F E            
Sbjct: 328 SGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVV 387

Query: 226 -----------------------MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
                                  MV+ GC+PDI TY I+++ LCK G + +A  ++    
Sbjct: 388 YNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAI 447

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P  F ++ L+  Y    +++ A+     M   GI  DV  YN+++   CKA K K
Sbjct: 448 VKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAK 507

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIIL----------------------------------- 347
            V    ++M  KG  PN+ T NI++                                   
Sbjct: 508 EVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLI 567

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +G    G+ D AY +F+++  K   A ADT+ ++I  +     ++ A K++  M  K + 
Sbjct: 568 HGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 627

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P ++T+ +L++GLC    V  +   L +MI KG  PS  TFG++  LL    R
Sbjct: 628 PDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHR 680



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 170/346 (49%), Gaps = 3/346 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I  L      +   +L N  + K +  ++  +  +++   R   +  A+   N M 
Sbjct: 353 YCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMV 412

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G   ++  +N +++ LCK  N+  A  +  D +   ++PD  T++ L++G+ K   L 
Sbjct: 413 EEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLD 472

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A ++   M   G  PD++TY  +++ LCKAG+  E     + M    CRP +  Y++L+
Sbjct: 473 SALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILI 532

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             +   N++E+A    + M ++G++ D   +N LI  FC+       Y + + ++ KG +
Sbjct: 533 ENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS 592

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
             + T NI++     +     A ++F  MI K  + D  TY +++   C+   +++A+  
Sbjct: 593 ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAH 652

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
              M  K F+PSM TF  ++N L     VS++  ++  M+  G+ P
Sbjct: 653 LAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 153/322 (47%), Gaps = 1/322 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V TF  ++    +   V E+      + K G++ N    N  +  LC+   + +A  + 
Sbjct: 210 DVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALV 269

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           + M     PD  TY+ L+ G  KD  +  A +    M++ GC PD  TY  ++D  CK+G
Sbjct: 270 ERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSG 329

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            + EA  ++K        P    Y  L++    E  IE A++ F E +   +  D+ +YN
Sbjct: 330 MLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYN 389

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR-RMIK 368
           +L+   C+     +  +V+ +M  +G  P+  T NII+NGL   G   +A  V    ++K
Sbjct: 390 SLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVK 449

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               D  T+  +I  +C+  +L+ A ++ + M      P + T++ ++NGLC  G   + 
Sbjct: 450 GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEV 509

Query: 429 CVLLEDMIEKGIRPSGETFGKL 450
               E+MI KG RP+  T+  L
Sbjct: 510 NETFEEMILKGCRPNAITYNIL 531



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 5/350 (1%)

Query: 126 KRMLNVETFC--IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           KR ++   F   I +R      ++EEAV     M  Y V  ++  +N L+  LCK   V+
Sbjct: 239 KRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQ 297

Query: 184 KAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           +A +    M ++  IPD  TY+ +++G+ K   L  A E+ ++ V  G  PD VTY  ++
Sbjct: 298 EAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLI 357

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           + LC  G ++ AL +     +   +P   +Y+ LV     +  I  A+    EM + G  
Sbjct: 358 NGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCH 417

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D+  YN +I   CK     +   V+ D   KG  P+  T N +++G   R + D A ++
Sbjct: 418 PDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQL 477

Query: 363 FRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             RM     A D  TY  ++   C+ G+ ++  + ++ M LK   P+  T+++LI   C 
Sbjct: 478 VERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 537

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
              + ++  ++  M + G+ P   +F  L     + G  D    L +K++
Sbjct: 538 INQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLD 587



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 212/457 (46%), Gaps = 12/457 (2%)

Query: 24  SSEPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIRVSPEIVEDV----LEKFRNAGT 78
           SSE +   + A +++ + ++S+ ++  +D AL  +   ++P+ ++ +    ++ +  AG 
Sbjct: 27  SSELTASTIPAYRALIRELVSAGRLDDVDAALASARSHLAPDSLQPLYVASIQAYARAGR 86

Query: 79  LAFCFFKWAEKQQNY--EHSVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKRMLNVETFC 135
           L      + E+   +    +  AY++++++L     + Q     V  +      +  T  
Sbjct: 87  LRAAVDAF-ERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHT 145

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           + ++ +    +   A+     + + G     AA+  ++  L    +   A+ +FD M  R
Sbjct: 146 VRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGR 205

Query: 196 FI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            + PD  T++ +L    +  ++  +  +  +++  G + +  T  I +  LC+ GR++EA
Sbjct: 206 DVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEA 265

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           + +V+ M + V  P    Y+ L+     ++++++A      M   G + D   YN +I  
Sbjct: 266 VALVERMGAYVA-PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDG 324

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEAD 373
           +CK+   +    +LKD   KG  P+  T   ++NGL   G+ + A  +F     K  + D
Sbjct: 325 YCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPD 384

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
              Y  ++K  C+ G +  A +V   M  +   P + T++++INGLC  G +SD+ V++ 
Sbjct: 385 LVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN 444

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           D I KG  P   TF  L     K  + D    L E+M
Sbjct: 445 DAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 481



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 3/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            +C ++R          A + F+ M    V  ++A FN +L ALC+  +V ++  +   +
Sbjct: 178 AYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKV 237

Query: 193 KDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R +  +K T +I + G  +D  L  A  +   M      PD+VTY  ++  LCK  +V
Sbjct: 238 LKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERM-GAYVAPDVVTYNTLMRGLCKDSKV 296

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA   +  M +  C P  F Y+ ++  Y     +++A +   +    G + D   Y +L
Sbjct: 297 QEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSL 356

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I   C     +    +  +  +K + P+    N ++ GL  +G    A +V   M++  C
Sbjct: 357 INGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGC 416

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
             D  TY ++I   C+ G +  A  V     +K ++P + TF+ LI+G C +  +  +  
Sbjct: 417 HPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQ 476

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L+E M   GI P   T+  +   L K G+
Sbjct: 477 LVERMWTYGIAPDVITYNSVLNGLCKAGK 505



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 4/243 (1%)

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF--IYSVLVHTYGVENRIEDAVDT 292
           I  Y  ++  L  AGR+D+    + S  S +  P S   +Y   +  Y    R+  AVD 
Sbjct: 35  IPAYRALIRELVSAGRLDDVDAALASARSHLA-PDSLQPLYVASIQAYARAGRLRAAVDA 93

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F  M+          YNA++ A   A      ++V   M + GVAP++RT  + L     
Sbjct: 94  FERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCL 153

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            G    A R+ R +  + C+A    Y  +++     G    A  ++  M  +   P + T
Sbjct: 154 TGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVAT 213

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           F+ +++ LC KG V +S  LL  ++++G+  +  T     + L ++GR +    L E+M 
Sbjct: 214 FNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMG 273

Query: 472 LLV 474
             V
Sbjct: 274 AYV 276


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 194/445 (43%), Gaps = 74/445 (16%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           +  ++ S+AK++ Y  +  L   M +  +  +V T  I++  +  + +V+ A+     + 
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKIL 118

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
           K G   + A F  L+  LC    + +A ++FD M  + F P+  TY  L+ G  KD  L 
Sbjct: 119 KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLT 178

Query: 218 RAREIFREMVDTGCNPDIVTYG-----------------------------------IMV 242
            A  +F EM+  G +PDI TY                                    I+V
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVV 238

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D LCK G+V EA  +V  M      P    Y+ L+  + + + +++AV  F  M +NG +
Sbjct: 239 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 298

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            +V  YN LI  +CK  +      + ++M  + + PN+ T + +++GL   G   +A  +
Sbjct: 299 CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIAL 358

Query: 363 FRRMI----------------------KLCEA--------------DADTYTMMIKMFCQ 386
           F  M+                      +L EA              D   Y + I   C+
Sbjct: 359 FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCR 418

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+LE A  ++  +  +   P + T +++I GLC +G++ ++  L  +M E G   +G T
Sbjct: 419 AGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCT 478

Query: 447 FGKLRKLLIKEGRED-VLKFLQEKM 470
           +  + + L++  +    ++ L+E +
Sbjct: 479 YNTITQGLLQNNKTSRAIQLLEEML 503



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 185/377 (49%), Gaps = 3/377 (0%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
           + ++ +V  Y +++  L K RQ     +L + M  K +  ++ T+  ++     + + + 
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
                N M K  +  N+ + N ++ ALCK   V +A ++ D M    + PD  TY+ L++
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G      +  A ++F  MV  GC  ++V+Y  +++  CK  R+D+A+ + + M      P
Sbjct: 275 GHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIP 334

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
            +  YS L+H      R++DA+  F EM   G + ++  Y+ L+   CK ++      +L
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALL 394

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
           K +    + P+ +  NI ++G+   G+ + A  +F  +  +  + D  T+ +MI+  C+ 
Sbjct: 395 KAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKR 454

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G L++A K+++ M     + +  T++ +  GL      S +  LLE+M+ +G      T 
Sbjct: 455 GLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTT 514

Query: 448 GKLRKLLIKEGREDVLK 464
             L K+L  +G +  +K
Sbjct: 515 ALLVKMLSDDGLDQSVK 531



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 43/371 (11%)

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP- 198
           K      +++A+ +F+ M        +  F  LL+++ K K+      +   M    IP 
Sbjct: 30  KSLHFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPP 89

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  T +I++  +     +  A  +  +++  G  PD  T+  +V  LC  G++ EAL + 
Sbjct: 90  DVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVF 149

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M     +P    Y  L++    + ++ +A++ F EM   GI  D+  YN+LI A C  
Sbjct: 150 DKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNL 209

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG------------------------ 354
            ++K+V  +L +M    + PN  + NI+++ L   G                        
Sbjct: 210 CEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTY 269

Query: 355 -----------ETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
                      E DEA +VF  M++  C  +  +Y  +I  +C+   ++KA  +++ M  
Sbjct: 270 AALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCR 329

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           +  IP+  T+S LI+GLC  G + D+  L  +M+  G  P+  T+  L   L K  R   
Sbjct: 330 QELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHR--- 386

Query: 463 LKFLQEKMNLL 473
              L E M LL
Sbjct: 387 ---LAEAMALL 394


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 37/347 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +E     ++ M ++G+  N+  +N LLS LC++  + +   + D M
Sbjct: 225 TYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEM 284

Query: 193 KDR-FIPDSKTYSILLEGWG-----------------------------------KDPNL 216
             R  +PD  TYSIL +G                                     KD  +
Sbjct: 285 ASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKI 344

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A E+ + +V++G     V Y  +++  C+ G ++ A  I + M S + RP    Y+ L
Sbjct: 345 SKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNAL 404

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++  G   RI +A D  +EMEKNG+   V  +N LI A+ +A + +  + +L DM  KG+
Sbjct: 405 INGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGL 464

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  +   I+N     G+  EA  +   M IK     A  Y  +I  + + G  ++AF 
Sbjct: 465 KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFM 524

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           + + MK     PS+ T+++LI GLC +  +S++  LL+ +   G+ P
Sbjct: 525 LAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAP 571



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 164/362 (45%), Gaps = 38/362 (10%)

Query: 147 VEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           ++EAV     M   G    N  ++N +++ L K+     A ++FD M ++  +P+  TY+
Sbjct: 168 LDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYN 227

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            +++G  K  +L     ++ +M+  G  P+++TY +++  LC+AGR+ E   ++  M S 
Sbjct: 228 TMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASR 287

Query: 265 VCRPTSFIYSVLVHTY-------------------GV----------------ENRIEDA 289
              P  F YS+L   +                   GV                + +I  A
Sbjct: 288 KMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKA 347

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +    +  +G+L    +YN LI  +C+    +  + + + M S+ + P+  T N ++NG
Sbjct: 348 EEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALING 407

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L       EA+ +   M K       +T+  +I  + + G+LEK F +   M+ K   P+
Sbjct: 408 LGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPN 467

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           + ++  ++N  C  G + ++  +L+DM  K + P  + +  +    I+ G  D    L E
Sbjct: 468 VVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAE 527

Query: 469 KM 470
           KM
Sbjct: 528 KM 529



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 147/338 (43%), Gaps = 49/338 (14%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVR-- 98
           +S  + VL T L  SG+  +  I   ++  +   G L  AF  F     QQ     +R  
Sbjct: 344 ISKAEEVLQT-LVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIF-----QQMKSRLIRPD 397

Query: 99  --AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
              Y+++I  L K+ +     DLV  M    +  +VETF  ++  Y R  ++E+     +
Sbjct: 398 HITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILS 457

Query: 156 VMQKYGVTQNLAAFNGLLSALCKS---------------KNVRKAQEIFDCMKDRFI--- 197
            MQ+ G+  N+ ++  +++A CK+               K+V    ++++ + D +I   
Sbjct: 458 DMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECG 517

Query: 198 ------------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                             P   TY++L++G  K   +  A E+   + + G  PD+++Y 
Sbjct: 518 STDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYN 577

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++   C     D AL + K M     +P+   Y +L  + G   R+ +  + + +M   
Sbjct: 578 TLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDK 637

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
            ++    +YN ++ A+ K  +   V  + K+M+ KG+A
Sbjct: 638 DVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIA 675



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 153/342 (44%), Gaps = 20/342 (5%)

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
            E+VL+   N+G L                +   Y+++I    +I   +  + +   M++
Sbjct: 347 AEEVLQTLVNSGLL---------------QTTVIYNTLINGYCQIGDLEGAFSIFQQMKS 391

Query: 126 KRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
            R++  +  T+  ++    +V+++ EA      M+K GV  ++  FN L+ A  ++  + 
Sbjct: 392 -RLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLE 450

Query: 184 KAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           K   I   M+++ + P+  +Y  ++  + K+  +  A  I  +M      P    Y  ++
Sbjct: 451 KCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAII 510

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D   + G  D+A  + + M S+   P+   Y++L+     +++I +A +    +   G+ 
Sbjct: 511 DAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLA 570

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  YN LI A C  +       + K+M   G+ P+ RT  ++ + L G G   E   +
Sbjct: 571 PDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENL 630

Query: 363 FRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           +++M+ K     +  Y +M+  + + GE  K   + K M  K
Sbjct: 631 YQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDK 672



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 10/227 (4%)

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVH 278
           R  F  +V     PD  T+   V     AG +DEA+G+++ M       P +F Y+V++ 
Sbjct: 137 RGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIA 196

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                    DAV  F EM +  ++ +   YN +I    K    ++ +R+   M   G+ P
Sbjct: 197 GLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKP 256

Query: 339 NSRTCNIILNGLIGRGETDEAYRVF-----RRMIKLCEADADTYTMMIKMFCQGGELEKA 393
           N  T N++L+GL   G   E   V      R+M+     D  TY+++     + G+ +  
Sbjct: 257 NVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVP----DGFTYSILFDGHSRTGDSQTM 312

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             +++    K      +T S+L+NGLC  G +S +  +L+ ++  G+
Sbjct: 313 LSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGL 359


>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g18390, mitochondrial; Flags: Precursor
 gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 185/419 (44%), Gaps = 13/419 (3%)

Query: 17  SFLRRYNSSEPSTEALDAAKSISKIMLSSPKVV--------LDTALDQSGIRVSPEIVED 68
           S +R +NS EP  ++ D+  +      +   VV         + +L+   + V+ E V  
Sbjct: 24  STIRHFNSLEP-LQSSDSTPTKGDYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFR 82

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           VL     +   +  FF WA    +Y  +   Y  + +SLA  ++Y+ MW ++  M+   +
Sbjct: 83  VLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSL 142

Query: 129 -LNVETFCIIMRKYARVQKVEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
            ++ ET C I+ +Y +   V++AV  FN V +  G  Q +  +N LL ALC  K    A 
Sbjct: 143 DISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAY 202

Query: 187 EIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
            +   M +    PD +TY+IL+ GW     +  A+E   EM   G NP      ++++ L
Sbjct: 203 ALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGL 262

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
             AG ++ A  +V  M      P    +++L+        +E  ++ +    K G+  D+
Sbjct: 263 LNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDI 322

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y  LI A  K  K    +R+L +    G  P       I+ G+   G  D+A+  F  
Sbjct: 323 DTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSD 382

Query: 366 M-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           M +K    +   YTM+I M  +GG+   A      M     +P    F ++ +GL + G
Sbjct: 383 MKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNGG 441



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 128/295 (43%), Gaps = 5/295 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMV 227
           +  L  +L   K      +I   MKD  +  S +T   ++E +GK+ ++ +A E+F  + 
Sbjct: 114 YEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVP 173

Query: 228 DT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            T GC   +  Y  ++  LC       A  +++ M     +P    Y++LV+ +    ++
Sbjct: 174 KTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKM 233

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A +   EM + G        + LI     A   ++   ++  M   G  P+ +T NI+
Sbjct: 234 KEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNIL 293

Query: 347 LNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  +   GE +    ++    KL  C  D DTY  +I    + G++++AF++        
Sbjct: 294 IEAISKSGEVEFCIEMYYTACKLGLC-VDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDG 352

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             P    ++ +I G+C  G+  D+     DM  K   P+   +  L  +  + G+
Sbjct: 353 HKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK 407



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 2/196 (1%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P  + Y  +   L    + +    I+K M       +      ++  YG    ++ AV+
Sbjct: 108 TPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVE 167

Query: 292 TFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
            F  + K  G    V +YN+L+ A C    F   Y +++ M  KG+ P+ RT  I++NG 
Sbjct: 168 LFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGW 227

Query: 351 IGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G+  EA      M +      A    ++I+     G LE A ++   M    F+P +
Sbjct: 228 CSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDI 287

Query: 410 HTFSVLINGLCDKGIV 425
            TF++LI  +   G V
Sbjct: 288 QTFNILIEAISKSGEV 303



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 6/206 (2%)

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM-YNALIGAFCKANKFKNVYRV 327
           + F++ VL  T    N   D++  F     N      +M Y  L  +     K+++++++
Sbjct: 77  SEFVFRVLRATSRSSN---DSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKI 133

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFC 385
           LK M    +  +  T   I+      G  D+A  +F  + K   C+   D Y  ++   C
Sbjct: 134 LKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALC 193

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
                  A+ + + M  K   P   T+++L+NG C  G + ++   L++M  +G  P   
Sbjct: 194 DVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPAR 253

Query: 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471
               L + L+  G  +  K +  KM 
Sbjct: 254 GRDLLIEGLLNAGYLESAKEMVSKMT 279


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 193/381 (50%), Gaps = 12/381 (3%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           +  +R+Y+S++ +L +  ++           T  +  N++T+ I+++   R ++ ++A  
Sbjct: 111 QPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKE 170

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             N M + G + ++ ++  L+++L K+  +  A ++FD M +R + PD   Y+IL++G+ 
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFF 230

Query: 212 KDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           K  ++  A EI+  ++      P+I +Y +M++ LCK G+ DE+  I   M         
Sbjct: 231 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           + YS L+H       ++ A   + EM +NG+  DV +YN ++  + +A + +    + K 
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKV 350

Query: 331 MNSKGVAPNSRTC---NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           M  +G     RT    NI++ GL    + DEA  ++  +  K C AD+ TY +++   C+
Sbjct: 351 MEKEGC----RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCK 406

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G L KA  + +  +  R       +S +INGLC +G + +   +L+ M + G +P+   
Sbjct: 407 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHV 466

Query: 447 FGKLRKLLIKEGR-EDVLKFL 466
              +    ++  + ED L+F 
Sbjct: 467 CNAVINGFVRASKLEDALRFF 487



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 182/357 (50%), Gaps = 2/357 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ +Y+ MI  L K  ++   +++ + M+  +R  ++ T+  ++        ++ A   +
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVY 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M + GV+ ++  +N +L+   ++  + +  E++  M+        +Y+IL+ G  ++ 
Sbjct: 314 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 373

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I+  + +  C  D +TYG++V  LCK G +++AL I++  ++      +F YS
Sbjct: 374 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYS 433

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            +++    E R+++      +M K+G   +  + NA+I  F +A+K ++  R   +M SK
Sbjct: 434 SMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSK 493

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G  P   T N ++NGL       EAY + + M+ K  + +  TY++++   CQG +L+ A
Sbjct: 494 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             +W     K F P +   +++I+GLC  G V D+  L  +M ++   P+  T   L
Sbjct: 554 LNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTL 610



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 176/366 (48%), Gaps = 38/366 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V  +  ++  Y R  ++EE +  + VM+K G  + + ++N L+  L ++  V +A  I+
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIW 382

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + + ++    DS TY +L+ G  K+  L +A  I  E  +   + D   Y  M++ LC+ 
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 442

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DE  G++  M    C+P   + + +++ +   +++EDA+  F  M   G    V  Y
Sbjct: 443 GRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 502

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---------------------C---- 343
           N LI    KA +F   Y ++K+M  KG  PN  T                     C    
Sbjct: 503 NTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 344 ----------NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
                     NII++GL   G+ ++A +++  M  + C  +  T+  +++ F +  + E+
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFER 622

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A K+W ++      P + ++++ + GLC    +SD+   L D +++G+ P+  T+  L +
Sbjct: 623 ASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVR 682

Query: 453 LLIKEG 458
            ++  G
Sbjct: 683 AVLDNG 688



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 182/377 (48%), Gaps = 5/377 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +Q +   V +Y ++I SLAK         L + M  + +  +V  + I++  + +   + 
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 236

Query: 149 EAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSIL 206
            A   +  +++   V  N+ ++N +++ LCK     ++ EI+  MK +    D  TYS L
Sbjct: 237 NASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 296

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G     NL  A  +++EM + G +PD+V Y  M++   +AGR++E L + K M+   C
Sbjct: 297 IHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC 356

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           R T   Y++L+       ++++A+  +  + +    AD   Y  L+   CK         
Sbjct: 357 R-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALS 415

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +L++  +     ++   + ++NGL   G  DE   V  +M K  C+ +      +I  F 
Sbjct: 416 ILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFV 475

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  +LE A + +  M  K   P++ T++ LINGL      S++  L+++M+ KG +P+  
Sbjct: 476 RASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMI 535

Query: 446 TFGKLRKLLIKEGREDV 462
           T+  L   L +  + D+
Sbjct: 536 TYSLLMNGLCQGKKLDM 552



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 171/385 (44%), Gaps = 39/385 (10%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           +SP+ V  +L+  +N  + A   F    +   Y H+   +H +++ L   +    +  +V
Sbjct: 8   LSPKRVIKLLKSEKNPHS-ALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIV 66

Query: 121 NAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCK 178
             +RT++    E   + +++ YA+    ++A+  F  M + +G    + ++N LL+AL +
Sbjct: 67  ELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
           S    +A+  F               +  E  G  PNL                    TY
Sbjct: 127 SNKWDEAESFF---------------LYFETMGLSPNLQ-------------------TY 152

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I++ + C+  + D+A  ++  M      P  F Y  L+++      + DA+  F EM +
Sbjct: 153 NILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 212

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKD-MNSKGVAPNSRTCNIILNGLIGRGETD 357
            G+  DVA YN LI  F K     N   + +  +    V PN  + N+++NGL   G+ D
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFD 272

Query: 358 EAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E++ ++ RM K     D  TY+ +I   C  G L+ A +V+K M      P +  ++ ++
Sbjct: 273 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTML 332

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIR 441
           NG    G + +   L + M ++G R
Sbjct: 333 NGYLRAGRIEECLELWKVMEKEGCR 357



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 357 DEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           D+A  +F+RM ++  C+    +Y  ++    +  + ++A   + Y +     P++ T+++
Sbjct: 95  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 154

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           LI   C K     +  LL  M E+G  P   ++G L   L K G   D LK   E
Sbjct: 155 LIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 209


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 193/381 (50%), Gaps = 12/381 (3%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           +  +R+Y+S++ +L +  ++           T  +  N++T+ I+++   R ++ ++A  
Sbjct: 111 QPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKE 170

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             N M + G + ++ ++  L+++L K+  +  A ++FD M +R + PD   Y+IL++G+ 
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFF 230

Query: 212 KDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
           K  ++  A EI+  ++      P+I +Y +M++ LCK G+ DE+  I   M         
Sbjct: 231 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
           + YS L+H       ++ A   + EM +NG+  DV +YN ++  + +A + +    + K 
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKV 350

Query: 331 MNSKGVAPNSRTC---NIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQ 386
           M  +G     RT    NI++ GL    + DEA  ++  +  K C AD+ TY +++   C+
Sbjct: 351 MEKEGC----RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCK 406

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G L KA  + +  +  R       +S +INGLC +G + +   +L+ M + G +P+   
Sbjct: 407 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHV 466

Query: 447 FGKLRKLLIKEGR-EDVLKFL 466
              +    ++  + ED L+F 
Sbjct: 467 CNAVINGFVRASKLEDALRFF 487



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 182/357 (50%), Gaps = 2/357 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ +Y+ MI  L K  ++   +++ + M+  +R  ++ T+  ++        ++ A   +
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVY 313

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M + GV+ ++  +N +L+   ++  + +  E++  M+        +Y+IL+ G  ++ 
Sbjct: 314 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 373

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I+  + +  C  D +TYG++V  LCK G +++AL I++  ++      +F YS
Sbjct: 374 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYS 433

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            +++    E R+++      +M K+G   +  + NA+I  F +A+K ++  R   +M SK
Sbjct: 434 SMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSK 493

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G  P   T N ++NGL       EAY + + M+ K  + +  TY++++   CQG +L+ A
Sbjct: 494 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             +W     K F P +   +++I+GLC  G V D+  L  +M ++   P+  T   L
Sbjct: 554 LNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTL 610



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 182/377 (48%), Gaps = 5/377 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +Q +   V +Y ++I SLAK         L + M  + +  +V  + I++  + +   + 
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 236

Query: 149 EAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSIL 206
            A   +  +++   V  N+ ++N +++ LCK     ++ EI+  MK +    D  TYS L
Sbjct: 237 NASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 296

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G     NL  A  +++EM + G +PD+V Y  M++   +AGR++E L + K M+   C
Sbjct: 297 IHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC 356

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           R T   Y++L+       ++++A+  +  + +    AD   Y  L+   CK         
Sbjct: 357 R-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALS 415

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +L++  +     ++   + ++NGL   G  DE   V  +M K  C+ +      +I  F 
Sbjct: 416 ILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFV 475

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  +LE A + +  M  K   P++ T++ LINGL      S++  L+++M+ KG +P+  
Sbjct: 476 RASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMI 535

Query: 446 TFGKLRKLLIKEGREDV 462
           T+  L   L +  + D+
Sbjct: 536 TYSLLMNGLCQGKKLDM 552



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 171/385 (44%), Gaps = 39/385 (10%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           +SP+ V  +L+  +N  + A   F    +   Y H+   +H +++ L   +    +  +V
Sbjct: 8   LSPKRVIKLLKSEKNPHS-ALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIV 66

Query: 121 NAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCK 178
             +RT++    E   + +++ YA+    ++A+  F  M + +G    + ++N LL+AL +
Sbjct: 67  ELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
           S    +A+  F               +  E  G  PNL                    TY
Sbjct: 127 SNKWDEAESFF---------------LYFETMGLSPNLQ-------------------TY 152

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            I++ + C+  + D+A  ++  M      P  F Y  L+++      + DA+  F EM +
Sbjct: 153 NILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 212

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKD-MNSKGVAPNSRTCNIILNGLIGRGETD 357
            G+  DVA YN LI  F K     N   + +  +    V PN  + N+++NGL   G+ D
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFD 272

Query: 358 EAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E++ ++ RM K     D  TY+ +I   C  G L+ A +V+K M      P +  ++ ++
Sbjct: 273 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTML 332

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIR 441
           NG    G + +   L + M ++G R
Sbjct: 333 NGYLRAGRIEECLELWKVMEKEGCR 357



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 38/308 (12%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V  +  ++  Y R  ++EE +  + VM+K G  + + ++N L+  L ++  V +A  I+
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIW 382

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + + ++    DS TY +L+ G  K+  L +A  I  E  +   + D   Y  M++ LC+ 
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 442

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DE  G++  M    C+P   + + +++ +   +++EDA+  F  M   G    V  Y
Sbjct: 443 GRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 502

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---------------------C---- 343
           N LI    KA +F   Y ++K+M  KG  PN  T                     C    
Sbjct: 503 NTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 344 ----------NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEK 392
                     NII++GL   G+ ++A +++  M  + C  +  T+  +++ F +  + E+
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFER 622

Query: 393 AFKVWKYM 400
           A K+W ++
Sbjct: 623 ASKIWDHI 630



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 154/333 (46%), Gaps = 11/333 (3%)

Query: 61  VSPEIV--EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL---AKIRQYQI 115
           VSP++V    +L  +  AG +  C   W   ++    +V +Y+ +I  L   AK+ +   
Sbjct: 321 VSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAIS 380

Query: 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175
           +W+L+         +  T+ +++    +   + +A+      +      +  A++ +++ 
Sbjct: 381 IWELLPEKDC--CADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMING 438

Query: 176 LCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LC+   + +   + D M K    P+    + ++ G+ +   L  A   F  MV  GC P 
Sbjct: 439 LCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPT 498

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTY  +++ L KA R  EA  +VK M     +P    YS+L++      +++ A++ + 
Sbjct: 499 VVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWC 558

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           +  + G   DV M+N +I   C + K ++  ++  +M  +   PN  T N ++ G     
Sbjct: 559 QALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVR 618

Query: 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
           + + A +++  +++   + ++ Y M  +  CQG
Sbjct: 619 DFERASKIWDHILQ-SWSSSNCYYM--EHTCQG 648



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 357 DEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           D+A  +F+RM ++  C+    +Y  ++    +  + ++A   + Y +     P++ T+++
Sbjct: 95  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 154

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           LI   C K     +  LL  M E+G  P   ++G L   L K G   D LK   E
Sbjct: 155 LIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 209


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 184/416 (44%), Gaps = 38/416 (9%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL+   +RV   +V +V+ K      +   FF+WA K++NY+H    Y ++I  L  +
Sbjct: 78  ERALEVLMLRVDHWLVREVM-KTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELV 136

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
            QY  MW ++  M                       V   +     M+           +
Sbjct: 137 EQYGEMWKMIQEM-----------------------VRSPICVVTPME----------LS 163

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            ++  L  +K + KA  IF  +K R   P ++ Y+ ++     +    +  E++ EM + 
Sbjct: 164 QVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNE 223

Query: 230 G-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           G C PD VTY  ++   CK GR D A+ ++  M     +PT+ IY++++  +   + +  
Sbjct: 224 GHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHG 283

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+  F EM       DV  Y  LI    KA +    Y    +M  +G  P++   N ++N
Sbjct: 284 ALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMIN 343

Query: 349 GLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIK-MFCQGGELEKAFKVWKYMKLKRFI 406
            L   G  D+  ++F  M +  C  +  TY  +IK +F     + + F  ++ MK     
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGIS 403

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           PS  T+S+LI+G C    +  + +LLE+M EKG  P    +  L   L K  R D+
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 191/405 (47%), Gaps = 8/405 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  +  V+    NA  +  A   F +  K +  + + +AY+SMI  L    QY+ + +
Sbjct: 157 VTPMELSQVIRMLGNAKMIGKAITIF-YQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHE 215

Query: 119 LVNAMRTKRMLNVET--FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M  +     +T  +  ++  + ++ + + A+   N M++ G+      +  ++S  
Sbjct: 216 LYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLF 275

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  NV  A  +F+ M+  +  PD  TY+ L+ G GK   +  A   + EM   GC PD 
Sbjct: 276 FKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDT 335

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           V    M++ L KAGR+D+ L + + M  + C P    Y+ ++   +  ++R+ +    F 
Sbjct: 336 VVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFE 395

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            M+ +GI      Y+ LI  FCK N+ +    +L++M+ KG  P       +++ L    
Sbjct: 396 RMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 355 ETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             D A  +F+ + + C  + A  Y +MIK   + G L+ A  ++  M      P+++ ++
Sbjct: 456 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYN 515

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            L++GL    ++ ++   +  M E G  P   ++  +   L K G
Sbjct: 516 ALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTG 560



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 131/281 (46%), Gaps = 3/281 (1%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFI-PD 199
            +  ++++ +  F  M       N+  +N ++ AL +SK+ V +    F+ MK   I P 
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPS 405

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TYSIL++G+ K   + +A  +  EM + G  P    Y  ++D L KA R D A  + +
Sbjct: 406 PFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 465

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            +       ++ +Y+V++   G   R++DA++ F EM K G   +V  YNAL+    +A 
Sbjct: 466 ELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARAC 525

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
                   ++ M   G  P+  + NIILNGL   G    A  +   M     + DA +Y 
Sbjct: 526 MLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYN 585

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            ++      G  E+A ++ K M    F   + T+S ++  +
Sbjct: 586 TVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 116/266 (43%), Gaps = 36/266 (13%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQI 115
           SGI  SP     +++ F     +        E  ++ +     AY S+I++L K ++Y +
Sbjct: 400 SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 116 MWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
             +L   ++      +   + ++++   +  ++++A+  F+ M K G T N+ A+N L+S
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            L ++           CM D                        A    R+M + GC PD
Sbjct: 520 GLARA-----------CMLDE-----------------------ALTTMRKMQEHGCLPD 545

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           I +Y I+++ L K G    A+ ++ +M ++  +P +  Y+ ++         E+A +   
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMK 605

Query: 295 EMEKNGILADVAMYNALIGAFCKANK 320
           EM   G   D+  Y++++ A  K ++
Sbjct: 606 EMNALGFEYDLITYSSILEAIGKVDQ 631


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 224/501 (44%), Gaps = 57/501 (11%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIR 60
           M+    SR++  +  ++ L   ++  P+   L  + +++  +   P+            R
Sbjct: 12  MLCSTQSRHRPKTTAVALLHSNSTGSPNN-PLPESYTVTPPIKPWPQ------------R 58

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQ----I 115
           + P+ +  ++ + +N   LA   F++A K Q N+ H+   Y S+I  L++ R +     +
Sbjct: 59  LYPKRLVSMITRQQNL-DLALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELL 117

Query: 116 MWDL------------VNAMRTKRMLNVETFCIIMRKYARVQ--KVEEAVYTFNVM---- 157
           + DL            +N +R   +     F   +R + R+Q   V+ +V + N +    
Sbjct: 118 LSDLHKSQIKCGENIFINVIRNYGLAGKPDFA--LRTFIRIQDFNVQRSVRSLNTLLNAF 175

Query: 158 -----------------QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPD 199
                             KYGV  N+   N L+ ALCK  +V  A ++ D M     IP+
Sbjct: 176 VQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPN 235

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TY+ +L G+    ++  A ++F E+ D G  PD  TY I+++  C+ GR+ +A+ ++ 
Sbjct: 236 VVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMD 295

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M      P    Y V+V  Y  E +  +A +   +M +   +   A+   +I   C+A 
Sbjct: 296 DMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAG 355

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379
           K +    + K M  K   P++   + +++ L   G+  EA ++F    +       TY  
Sbjct: 356 KIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNT 415

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I   C+ GEL +A K+W  M  K + P+  T+++LI G    G   +   +LE+M++  
Sbjct: 416 LIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNR 475

Query: 440 IRPSGETFGKLRKLLIKEGRE 460
             P+  T+  L + L K G E
Sbjct: 476 CMPNKSTYAILIEELCKMGME 496



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 109/201 (54%), Gaps = 2/201 (0%)

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           I+  ++  YG+  + + A+ TF+ ++   +   V   N L+ AF +  ++  V+ + K+ 
Sbjct: 132 IFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNC 191

Query: 332 NSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGE 389
            SK GV PN  TCNI++  L  + + + A +V   M  +    +  TYT ++  +   G+
Sbjct: 192 RSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGD 251

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +  A KV+  +  + ++P   T+++L+NG C++G ++D+  L++DM E G+ P+  T+G 
Sbjct: 252 MVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGV 311

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           + +   KE +    + L + M
Sbjct: 312 MVEAYCKEKKAGEARNLLDDM 332



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 47/284 (16%)

Query: 113 YQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           Y    D+VNA +    L       +  T+ I+M  Y    ++ +A+   + M + GV  N
Sbjct: 246 YSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPN 305

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDR------------------------------ 195
              +  ++ A CK K   +A+ + D M +R                              
Sbjct: 306 EVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWK 365

Query: 196 ------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
                  +PD+   S L+    K+  +  AR++F E  + G  P ++TY  ++  +C+ G
Sbjct: 366 RMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF-ERGAIPSLLTYNTLIAGMCEKG 424

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            + EA  +   M     +P +F Y++L+  +      ++ +    EM  N  + + + Y 
Sbjct: 425 ELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYA 484

Query: 310 ALIGAFCKANKFKNVYRVLK-DMNSKGVAPNSRTCNIILNGLIG 352
            LI   CK      V +V+   M S GV  +S + ++ LN  +G
Sbjct: 485 ILIEELCKMGMEGEVDKVVSMAMASGGV--DSDSWDLFLNKAVG 526


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 172/378 (45%), Gaps = 21/378 (5%)

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           + +QI+ ++   MR   + +  T+  ++    + +KVE++   F  M++ GV  ++  + 
Sbjct: 435 KAFQILKEM---MRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+ + CK+  + +A+  FD M+     P+  TY+ LL  + K   L +A +IF  MVD 
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDA 551

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM----------------DSTVCRPTSFIY 273
            C P+ VTY  ++D LCKAG + +A  + + +                D+    P    Y
Sbjct: 552 ACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTY 611

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             L+       ++ DA +    M   G   +  +Y+ALI  FCK  K  N   V   M  
Sbjct: 612 GALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTK 671

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEK 392
            G  P+  T   +++ +   G  D A +V   M+   C  +  TYT MI    + GE+EK
Sbjct: 672 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEK 731

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +   M+ K   P++ T++ LI+GL   G    S  L + M  KG  P+  T+  L  
Sbjct: 732 ALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLIN 791

Query: 453 LLIKEGREDVLKFLQEKM 470
                G  D    L ++M
Sbjct: 792 HCCAAGLLDEAHLLLDEM 809



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 150/316 (47%), Gaps = 24/316 (7%)

Query: 176 LCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LC      KA +I  + M+  F+PD+ TY+ ++    +   + ++  +F+EM   G NPD
Sbjct: 427 LCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPD 486

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           + TY I++D  CKAG +++A      M S  C P    Y+ L+H Y    ++  A D F 
Sbjct: 487 VYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFH 546

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM----------------NSKGVAP 338
            M       +   Y+ALI   CKA + +    V + +                ++  +AP
Sbjct: 547 RMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAP 606

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           N  T   +++GL    +  +A+ +   M+   CE +   Y  +I  FC+ G+++ A +V+
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF 666

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M    ++PS+HT++ LI+ +   G +  +  +L +M+     P+  T+  +   L K 
Sbjct: 667 LRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKV 726

Query: 458 GREDVLKFLQEKMNLL 473
           G       +++ +NLL
Sbjct: 727 GE------IEKALNLL 736



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 152/369 (41%), Gaps = 38/369 (10%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           ++  C +  K        E+ + F       +  N+  +  L+  LCK++ V  A E+ D
Sbjct: 573 IQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLD 632

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M      P+   Y  L++G+ K   +  A+E+F  M   G  P + TY  ++D + K G
Sbjct: 633 AMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDG 692

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R+D A+ ++  M +  C P    Y+ ++        IE A++    ME+ G   +V  Y 
Sbjct: 693 RLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYT 752

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM--- 366
           ALI    K  K     ++ K MNSKG APN  T  +++N     G  DEA+ +   M   
Sbjct: 753 ALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHT 812

Query: 367 -----------------------IKLCE--------ADADTYTMMIKMFCQGGELEKAFK 395
                                  + L E          A  Y M+I  F + G LE A +
Sbjct: 813 HWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALE 872

Query: 396 VWKYM---KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           + K +        + S   ++ LI  LC    V ++  L  +M  KGI P    F  L K
Sbjct: 873 LHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVK 932

Query: 453 LLIKEGRED 461
            LI+  + D
Sbjct: 933 GLIEVNKWD 941



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 166/384 (43%), Gaps = 25/384 (6%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           MI  L +   +      ++ MR    + NV T+  ++  + + ++        N+M   G
Sbjct: 277 MISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEG 336

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAR 220
              N + FN L+   C + +   A ++F+ M     P     Y+I +        LP A 
Sbjct: 337 CNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAE 396

Query: 221 ------EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                 +++ EM+   C  + V        LC  G+ ++A  I+K M      P +  Y+
Sbjct: 397 LLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYT 456

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++       ++E +   F EM++ G+  DV  Y  LI +FCKA   +       +M S 
Sbjct: 457 KVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSV 516

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G +PN  T   +L+  +   +  +A+ +F RM+   C  +A TY+ +I   C+ GE++KA
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKA 576

Query: 394 FKVWKYM----------------KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +V++ +                      P++ T+  LI+GLC    VSD+  LL+ M+ 
Sbjct: 577 CEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLA 636

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
            G  P+   +  L     K G+ D
Sbjct: 637 AGCEPNQIVYDALIDGFCKIGKID 660



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 153/330 (46%), Gaps = 8/330 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I+ L K ++     +L++AM       N   +  ++  + ++ K++ A   F
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF 666

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
             M K G   ++  +  L+  + K   +  A ++  + + D   P+  TY+ +++G  K 
Sbjct: 667 LRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKV 726

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             + +A  +   M + GC+P++VTY  ++D L K G+ D +L + K M+S  C P    Y
Sbjct: 727 GEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTY 786

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            VL++       +++A     EM+       +  Y+  +  F K  KF     +L++M S
Sbjct: 787 RVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSK--KFIASLGLLEEMES 844

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA----DADTYTMMIKMFCQGGE 389
               P +    ++++     G  + A  + + ++++  +        Y  +I+  C   +
Sbjct: 845 HETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQ 904

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           +E+AF ++  M  K  +P +  F  L+ GL
Sbjct: 905 VEEAFTLYTEMTRKGIVPDLIVFVSLVKGL 934



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 167/420 (39%), Gaps = 51/420 (12%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT------KRMLNVETFCI 136
           FF WAE+Q  Y H+   Y ++ E L      +    L+  +        +R+LNV     
Sbjct: 120 FFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNV----- 174

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV----RKAQEIFD-- 190
           ++R+  R    +EA+     ++ +G   +   +N L+  L  +  V    R  +E+    
Sbjct: 175 LVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASG 234

Query: 191 -CM--------------------------KDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
            CM                          K+ F  D+   + ++ G  +      A    
Sbjct: 235 FCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFL 294

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             M    C P++VTY  ++    K  +      I+  M +  C P   +++ LVH Y   
Sbjct: 295 HRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNA 354

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN------VYRVLKDMNSKGVA 337
                A   F  M   G       YN  IG+ C   +  N      V +V ++M +    
Sbjct: 355 GDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCV 414

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
            N          L G G+ ++A+++ + M+ K    D  TYT +I   CQ  ++EK+F +
Sbjct: 415 LNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLL 474

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
           ++ MK     P ++T+++LI+  C  G++  +    ++M   G  P+  T+  L    +K
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 138/301 (45%), Gaps = 38/301 (12%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I+   KI +     ++   M +   + +V T+  ++ +  +  +++ A+   + M 
Sbjct: 646 YDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEML 705

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
                 N+  +  ++  L K   + KA  +   M+++   P+  TY+ L++G GK     
Sbjct: 706 NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKAD 765

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----------------------- 254
            + ++F++M   GC P+ VTY ++++  C AG +DEA                       
Sbjct: 766 ASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAV 825

Query: 255 ----------LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD---TFLEMEKNGI 301
                     LG+++ M+S    P + +Y +L+ ++    R+E A++     +E+  +  
Sbjct: 826 QGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLN 885

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           +    MY +LI A C A++ +  + +  +M  KG+ P+      ++ GLI   + DEA +
Sbjct: 886 MTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQ 945

Query: 362 V 362
           +
Sbjct: 946 L 946



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 117/246 (47%), Gaps = 7/246 (2%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y +MI+ L+K+ + +   +L++ M  K    NV T+  ++    +  K + ++  F
Sbjct: 712 NVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLF 771

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKD 213
             M   G   N   +  L++  C +  + +A  + D MK    P   + Y   ++G+ K 
Sbjct: 772 KQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSK- 830

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM---DSTVCRPTS 270
                +  +  EM      P    YG+++D   KAGR++ AL + K +    S++   ++
Sbjct: 831 -KFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTST 889

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            +Y+ L+    + +++E+A   + EM + GI+ D+ ++ +L+    + NK+    ++   
Sbjct: 890 GMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYG 949

Query: 331 MNSKGV 336
              +GV
Sbjct: 950 RCHEGV 955


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 204/466 (43%), Gaps = 64/466 (13%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFR--------NAGTLAFCFFK-WAEKQQNYEHSV 97
            +VL    DQ  +  +  ++ D+L  F         NA     C  + W   Q   E  V
Sbjct: 185 NLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMV 244

Query: 98  RA--------YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
            A        + ++I  L +   ++ + ++   M       +V  +  I+    + +++E
Sbjct: 245 AAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLE 304

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILL 207
            A    N M  YG++ N+  +N LL  LC +    +A+ +   M D+  P D  T++IL+
Sbjct: 305 VARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILV 364

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +   ++  + R  E+  +M++ GC PD++TY  +++  CK G +DEA+ +++SM +  CR
Sbjct: 365 DFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCR 424

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  Y++++       R  DA +   +M + G   +   +N LI   CK    +    +
Sbjct: 425 PNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 484

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------------------- 368
           LK M   G +P+  + + +++GL   G TDEA  +   M+K                   
Sbjct: 485 LKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSG 544

Query: 369 -----------------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
                               +DA  Y  +I   C+ GE ++A +   YM     +P+  T
Sbjct: 545 EGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNEST 604

Query: 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           +++LI GL  +G V ++  +L ++  K         G LRK L+K 
Sbjct: 605 YTILIRGLASEGFVKEAQEILTELCSK---------GALRKHLMKH 641



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 136/336 (40%), Gaps = 38/336 (11%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAR 220
           V  N   +  L+ ALC    +  A  + D M  R   P    Y + LE   +      A 
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-------------------- 260
            + R++   GC  D+    +++  +C  G VDEA+ +++                     
Sbjct: 167 GVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRG 226

Query: 261 ----------------MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
                           M +  C P    +S L+         E   +   +M ++G   D
Sbjct: 227 LCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPD 286

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           V MY  +I   CK  + +    +L  M S G++PN    N +L GL      +EA  +  
Sbjct: 287 VRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLA 346

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
            M  K C  D  T+ +++   CQ G +++  +V + M     +P + T++ +ING C +G
Sbjct: 347 EMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEG 406

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           ++ ++ +LL  M   G RP+  ++  + K L    R
Sbjct: 407 LIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAER 442



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 5/235 (2%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  MV   C+AG++  A  +  S+      P ++ Y  LV       RI DA+    +M 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVPVA---PNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G      MY+  + A C+A+ F+    VL+D++ +G A +   CN++L  +  +G  D
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVD 198

Query: 358 EAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           EA R+ R ++    CE D  +Y  +++  C          + + M      P++ TFS L
Sbjct: 199 EAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTL 258

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I  LC  G+      +   M E G  P    +  +   + KE R +V + +  +M
Sbjct: 259 IGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM 313


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 189/403 (46%), Gaps = 18/403 (4%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIM 138
           A    +  E+  +   +V  Y+++I+ L K  ++    +L   M+ K +  ++ T+  ++
Sbjct: 236 ALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMI 295

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FI 197
             +    +  +A      M +  +  ++  F+ L++A  K     +A+E++D M  R  I
Sbjct: 296 NGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSII 355

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P + TYS +++G+ K   L  A  +F      GC+PDI+T+  ++   C+A RVD+ + +
Sbjct: 356 PSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKL 415

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M        +  Y+ L+H +     +  A D   EM  +G+  +V   N L+   C 
Sbjct: 416 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCD 475

Query: 318 ANKFKNVYRVLKDMNSK-----------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             K K+   + K M              GV P+ +T NI++ GLI  G+  EA  ++  M
Sbjct: 476 NGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535

Query: 367 I-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
             +    D  TY+ MI   C+   L++A +++  M  K F P + TF+ LI G C  G+V
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMV 595

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKL----RKLLIKEGREDVLK 464
            D   L  +M ++GI     T+  L    RK+   +G  D+ +
Sbjct: 596 DDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQ 638



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 174/384 (45%), Gaps = 27/384 (7%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--------NVETFCIIMRKYARVQKVEEA 150
            Y ++++ + K      M D V+A+   R +        NV  +  I+    +  +  +A
Sbjct: 219 TYGTIVDGMCK------MGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDA 272

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
              F  MQ+  +  ++  +N +++  C S     A+++   M +R I PD  T+S L+  
Sbjct: 273 HNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINA 332

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K+     A E++ EM+     P  VTY  M+D  CK  R+D A  +     +  C P 
Sbjct: 333 FVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPD 392

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              ++ L+  Y    R++D +    EM + G++A+   Y  LI  FC+         +L+
Sbjct: 393 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 452

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL------------CEADADTY 377
           +M S GV PN  TCN +L+GL   G+  +A  +F+ M K              E D  TY
Sbjct: 453 EMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTY 512

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I      G+  +A ++++ M  +  +P   T+S +I+GLC +  + ++  + + M  
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 572

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
           K   P   TF  L     K G  D
Sbjct: 573 KSFSPDVVTFNTLITGYCKAGMVD 596



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 183/378 (48%), Gaps = 6/378 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           SV  +  ++  + ++ +  ++  L   M   RM  N  +F I+M+ +    K+  A+ TF
Sbjct: 80  SVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTF 139

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + K G    +  FN LL  LC    + +A ++F  M     P+  T++ L+ G  ++ 
Sbjct: 140 GKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCK---PNVVTFTTLMNGLCREG 196

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIY 273
            +  A  +   M++ G  P+ +TYG +VD +CK G    AL +++ M+  +   P   IY
Sbjct: 197 RVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIY 256

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + ++     + R  DA + F+EM++  I  D+  YN +I  FC + ++ +  ++L++M  
Sbjct: 257 NTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE 316

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + P+  T + ++N  +  G+  EA  ++  M+ +       TY+ MI  FC+   L+ 
Sbjct: 317 RKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDA 376

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  ++     K   P + TF+ LI G C    V D   LL +M E G+  +  T+  L  
Sbjct: 377 AEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIH 436

Query: 453 LLIKEGREDVLKFLQEKM 470
              + G  +  + L ++M
Sbjct: 437 GFCQVGDLNAAQDLLQEM 454



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 181/379 (47%), Gaps = 23/379 (6%)

Query: 80  AFCFF-KWAEKQQNYEH--------SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML- 129
            FC   +W++ +Q  +          V  + ++I +  K  ++    +L + M  + ++ 
Sbjct: 297 GFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIP 356

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +  T+  ++  + +  +++ A + F +    G + ++  FN L++  C++K V    ++ 
Sbjct: 357 STVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLL 416

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +   + ++ TY+ L+ G+ +  +L  A+++ +EM+ +G  P++VT   ++D LC  
Sbjct: 417 HEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDN 476

Query: 249 GRVDEALGIVKSM-----DSTVCRPTSFI------YSVLVHTYGVENRIEDAVDTFLEME 297
           G++ +AL + K+M     D    RP + +      Y++L+     E +  +A + + EM 
Sbjct: 477 GKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMP 536

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             GI+ D   Y+++I   CK ++     ++   M SK  +P+  T N ++ G    G  D
Sbjct: 537 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVD 596

Query: 358 EAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +   +F  M  +   ADA TY  +I  F +   ++ A  +++ M      P   T   ++
Sbjct: 597 DGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNML 656

Query: 417 NGLCDKGIVSDSCVLLEDM 435
            GL  K  +  +  +LED+
Sbjct: 657 TGLWSKEELERAVAMLEDL 675



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 157/370 (42%), Gaps = 30/370 (8%)

Query: 64  EIVEDVLEKFRNAGTLAFCFF--------KWAEKQQNYEH--------SVRAYHSMIESL 107
           ++++++LE+  N   + F           K+ E ++ Y+         S   Y SMI+  
Sbjct: 309 QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGF 368

Query: 108 AKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
            K  +      +     TK    ++ TF  ++  Y R ++V++ +   + M + G+  N 
Sbjct: 369 CKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANT 428

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFRE 225
             +  L+   C+  ++  AQ++   M    + P+  T + LL+G   +  L  A E+F+ 
Sbjct: 429 ITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 226 M------VDT-----GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           M      +D      G  PD+ TY I++  L   G+  EA  + + M      P +  YS
Sbjct: 489 MQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++     ++R+++A   F  M       DV  +N LI  +CKA    +   +  +M  +
Sbjct: 549 SMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQR 608

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+  ++ T   ++ G       D A  +F+ MI      D  T   M+       ELE+A
Sbjct: 609 GIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERA 668

Query: 394 FKVWKYMKLK 403
             + + +++ 
Sbjct: 669 VAMLEDLQMS 678



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 18/244 (7%)

Query: 32  LDAAKSISKIMLSS---PKVV-----LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83
           L+AA+ + + M+SS   P VV     LD   D   ++       D LE F+ A   +   
Sbjct: 444 LNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLK-------DALEMFK-AMQKSKMD 495

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
              +      E  V+ Y+ +I  L    ++    +L   M  + ++ +  T+  ++    
Sbjct: 496 IDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSK 201
           +  +++EA   F+ M     + ++  FN L++  CK+  V    E+F  M  R  + D+ 
Sbjct: 556 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAI 615

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY  L+ G+ K  N+  A +IF+EM+ +G  PD +T   M+  L     ++ A+ +++ +
Sbjct: 616 TYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675

Query: 262 DSTV 265
             +V
Sbjct: 676 QMSV 679



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 39/256 (15%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L  G+ +   L  A ++F  MV +   P ++ +  ++ V+ + GR D  + + K M+   
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKME--- 108

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
                                       L M  N        +  L+  FC  +K     
Sbjct: 109 ---------------------------MLRMPCNAY-----SFTILMKCFCSCSKLPFAL 136

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
                +   G  P   T N +L+GL       EA  +F +M   C+ +  T+T ++   C
Sbjct: 137 STFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM---CKPNVVTFTTLMNGLC 193

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE-KGIRPSG 444
           + G + +A  +   M      P+  T+  +++G+C  G    +  LL  M E   I P+ 
Sbjct: 194 REGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNV 253

Query: 445 ETFGKLRKLLIKEGRE 460
             +  +   L K+GR 
Sbjct: 254 VIYNTIIDGLWKDGRH 269


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 177/380 (46%), Gaps = 38/380 (10%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  T  I++  Y +  + ++     + M+K  V  ++   N ++ A  ++ +   A  +
Sbjct: 93  VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 152

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            D M  + + P   TY+ +L+G  +     +A E+F+EM D G  PD+ ++ I++   C+
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G ++EAL I K M     +P    +S L+  +    +++ A+    EM   G++ D  +
Sbjct: 213 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI 272

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG--------------- 352
           Y  +IG FC+A    +  RV  +M   G  P+  T N +LNGL                 
Sbjct: 273 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 332

Query: 353 --------------------RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
                                G+ D+A ++F  M+ +    D  TY  +I   C+ G+L+
Sbjct: 333 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 392

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           KA  +W  M  +   P+  T+S+LI+  C+KG V D+   L++MI KGI P+  T+  + 
Sbjct: 393 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 452

Query: 452 KLLIKEGR-EDVLKFLQEKM 470
           K   + G      KFLQ+ M
Sbjct: 453 KGYCRSGNVSKGQKFLQKMM 472



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 186/385 (48%), Gaps = 3/385 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
            +  Y+S+++ L +   +   W++   M    +  +V +F I++  + RV ++EEA+  +
Sbjct: 164 GIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIY 223

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M+  G+  +L +F+ L+    +   +  A      M+    +PD   Y++++ G+ + 
Sbjct: 224 KEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRA 283

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  EMV  GC PD+VTY  +++ LCK  R+ +A G++  M      P    +
Sbjct: 284 GLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTF 343

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H Y +E +++ A+  F  M    +  D+  YN LI   C+         +  DM+S
Sbjct: 344 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS 403

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T +I+++    +G+ ++A+     MI K    +  TY  +IK +C+ G + K
Sbjct: 404 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSK 463

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             K  + M + +  P + T++ LI+G   +  + D+  LL  M ++ ++P   T+  L  
Sbjct: 464 GQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLIN 523

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEP 477
                G      ++ EKM     EP
Sbjct: 524 GFSVHGNVQEAGWIFEKMCAKGIEP 548



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 163/308 (52%), Gaps = 2/308 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++  + R   + +A+   + M   G   ++  +N LL+ LCK + +  A+ + + M+
Sbjct: 273 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 332

Query: 194 DRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R +P D  T++ L+ G+  +  L +A ++F  M++    PDIVTY  ++D +C+ G +D
Sbjct: 333 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 392

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M S    P    YS+L+ ++  + ++EDA     EM   GIL ++  YN++I
Sbjct: 393 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 452

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
             +C++       + L+ M    V+P+  T N +++G I   +  +A+++   M K   +
Sbjct: 453 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 512

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY M+I  F   G +++A  +++ M  K   P  +T+  +ING    G   ++  L
Sbjct: 513 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 572

Query: 432 LEDMIEKG 439
            ++M+++G
Sbjct: 573 HDEMLQRG 580



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 149/325 (45%), Gaps = 13/325 (4%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP------DSKTYSILLEGWGKDPNL 216
           T     F+ L+    +S+  R+A E F  + D  +P      ++   ++   GW   P+L
Sbjct: 22  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGW---PHL 78

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A + +R +  +    +  T  IMV   CKA   D+   ++  M+     P    ++V+
Sbjct: 79  --AADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVM 136

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V         E A+     M   G+   +  YN+++   C++  +   + V K+M+  GV
Sbjct: 137 VDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGV 196

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
           AP+ R+  I++ G    GE +EA ++++ M  +  + D  +++ +I +F + G+++ A  
Sbjct: 197 APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMA 256

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
             + M+    +P    ++++I G C  G++SD+  + ++M+  G  P   T+  L   L 
Sbjct: 257 YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 316

Query: 456 KEGR-EDVLKFLQEKMNLLVKEPLC 479
           KE R  D    L E     V   LC
Sbjct: 317 KERRLLDAEGLLNEMRERGVPPDLC 341



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 111/249 (44%), Gaps = 37/249 (14%)

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-------------- 302
           IV S+  +   P   ++ +L+ TY    +  +A + F  +  + +               
Sbjct: 12  IVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALS 71

Query: 303 -------------------ADVAMY--NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                              ++V  Y  N ++  +CKA +F  V  V+ +M  + V P+  
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N++++     G+ + A  +   M+ K  +    TY  ++K  C+ G  +KA++V+K M
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 191

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P + +F++LI G C  G + ++  + ++M  +GI+P   +F  L  L  + G+ 
Sbjct: 192 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKM 251

Query: 461 D-VLKFLQE 468
           D  + +L+E
Sbjct: 252 DHAMAYLRE 260


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 187/379 (49%), Gaps = 6/379 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V +Y S+I  L+ + + ++   ++  M R     NV TF  +M+ Y    +V E V  +
Sbjct: 281 NVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLW 340

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFI-PDSKTYSILLEGWGK 212
            VM   GV  N+  +N LL+ LC S N+ +A ++   M KD F  P+  TYS L+ G+ K
Sbjct: 341 RVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVK 400

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             +L  A E++ +MV+ G  P++V Y  MVDVLCK    D+A  ++ +M +  C PT   
Sbjct: 401 AGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVT 460

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           ++  +       R+  A+    +M++ G L D   YN L+      N+ K    +++++ 
Sbjct: 461 FNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELE 520

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELE 391
            + V  N  T N ++ G    G+ +   +V  RM +   + DA T  ++I  + + G++ 
Sbjct: 521 ERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVR 580

Query: 392 KAFKVWKYMKL-KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            A +    +   K   P +   + L+ G+C+   + ++ V L  M+ KGI P+  T+  L
Sbjct: 581 TAIQFLDRITAGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVL 640

Query: 451 -RKLLIKEGREDVLKFLQE 468
            R    K G    ++ L +
Sbjct: 641 VRGFFKKLGHMGPIRILDD 659



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 183/418 (43%), Gaps = 38/418 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A   F++      ++H+   YH MIE L +  +   +  +++ M+ +R+  + ++F  ++
Sbjct: 56  ALQHFQYLTNTLAFKHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVL 115

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC--KSKNVRKAQEIFDCMKDRF 196
             Y      + A+  F  ++++G    +  +N LL AL             +++ M+   
Sbjct: 116 NSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEG 175

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           + P+  TY++LL+   K+  L  A ++  EM   GC PD V+Y  +V  +C+ GRV+EA 
Sbjct: 176 MEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAR 235

Query: 256 ---------GIVKSMDSTVCR-----------------------PTSFIYSVLVHTYGVE 283
                    G+V   ++ +C                        P    YS ++      
Sbjct: 236 EVARRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDV 295

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
             +E A+    +M + G   +V  +++L+  +    +      + + M  +GV PN    
Sbjct: 296 GEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVY 355

Query: 344 NIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
           N +LNGL   G   EA  V  RM K   C  +  TY+ ++  F + G+L+ A +VW  M 
Sbjct: 356 NTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMV 415

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
                P++  ++ +++ LC   +   +  L+++M   G  P+  TF    K L   GR
Sbjct: 416 NCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGR 473



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 128/315 (40%), Gaps = 27/315 (8%)

Query: 29  TEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSP-EIVEDVLEKFRNAGTLAFCFFKWA 87
            EA+D    + K     P V   + L    ++    +   +V  K  N G          
Sbjct: 369 AEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGV--------- 419

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQK 146
                   +V  Y SM++ L K   +   + L++ M T      V TF   ++      +
Sbjct: 420 ------RPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGR 473

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSI 205
           V  A+   + MQ+YG   +   +N LL  L     +++A E+   +++R +  +  TY+ 
Sbjct: 474 VLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNT 533

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           ++ G+          ++   M+  G  PD +T  +++    K G+V  A+  +  + +  
Sbjct: 534 VMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAG- 592

Query: 266 CRPTSFIYSVLVHT---YGVENR--IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
                    ++ HT   +G+ N   IE+A+    +M   GI  ++A ++ L+  F K   
Sbjct: 593 ---KELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGFFKKLG 649

Query: 321 FKNVYRVLKDMNSKG 335
                R+L D+  KG
Sbjct: 650 HMGPIRILDDILGKG 664


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 189/420 (45%), Gaps = 22/420 (5%)

Query: 70  LEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML 129
           L++ R      F FFKWA+   +Y HS+ +  SMI  L K R ++    +++ M  + +L
Sbjct: 51  LKQHRYEPFFIFHFFKWAQSIPHYTHSLHSSWSMIHMLTKHRHFKTAQQVLDKMAQREIL 110

Query: 130 ------------------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                             N      I+  YA+ +   +AV  F  M    +  +L A   
Sbjct: 111 SSPSVLTSLVRIHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTV 170

Query: 172 LLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L+++L K        +++  M +D  +P+   Y+ L+    K  ++ RA  I  EM   G
Sbjct: 171 LMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKG 230

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             PDI TY  ++ + CK G   EAL +   M+          Y+ L++ +  E ++ +A+
Sbjct: 231 VVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAM 290

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F E+ K+ I   V  Y  LI  +CKAN+F+   R+ + M +KG+ P   T N IL  L
Sbjct: 291 RMFGEI-KDAIPNHVT-YTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKL 348

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G   +A ++   M  +  +AD+ T   +I  +C+ G+L  A K    M      P+ 
Sbjct: 349 CSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNS 408

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            T+  LI+G C    +  +  LL  M++ G  P+  T+  +     K+   D +  L ++
Sbjct: 409 FTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDE 468



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 161/346 (46%), Gaps = 5/346 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+ +I + +K R  +    ++N M  K ++ ++ T+  ++  Y +     EA+   
Sbjct: 199 NIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQ 258

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
           + M++ G+  ++ ++N L+   CK   +R+A  +F  +KD  IP+  TY+ L++G+ K  
Sbjct: 259 DKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDA-IPNHVTYTTLIDGYCKAN 317

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A  +   MV  G  P +VTY  ++  LC  GR+ +A  ++  M     +  S   +
Sbjct: 318 EFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCN 377

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ Y     +  A+    +M + G+  +   Y ALI  FCK ++ ++   +L  M   
Sbjct: 378 TLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDA 437

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEK 392
           G +PN RT + I++    +  TD    +    +    C  +   Y  +I+  C+   +E 
Sbjct: 438 GFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFC-LNISLYRALIRRLCKIERIEC 496

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           A K+  +M+ K        ++ L       G  + +  +LE+M  +
Sbjct: 497 AEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARR 542



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 201/473 (42%), Gaps = 36/473 (7%)

Query: 16  ISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRN 75
           I  L ++   + + + LD  K   + +LSSP V+  T+L +  I   PE+         N
Sbjct: 85  IHMLTKHRHFKTAQQVLD--KMAQREILSSPSVL--TSLVR--IHDDPEV---------N 129

Query: 76  AGTLAFCFFKWAEKQQNYEHSVRAYHSM---------------IESLAKIRQYQIMWDLV 120
           +  L++    +A+ +  ++ +V+ +  M               + SL K     ++W + 
Sbjct: 130 SHVLSWIVIHYAKSKMTHD-AVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVY 188

Query: 121 NAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
             M    ++ N+  +  ++   ++ + VE A +  N M+  GV  ++  +N L++  CK 
Sbjct: 189 KRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKK 248

Query: 180 KNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
               +A  + D M+   I  D  +Y+ L+ G+ K+  +  A  +F E+ D    P+ VTY
Sbjct: 249 GLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDAI--PNHVTY 306

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++D  CKA   +EAL + + M +    P    Y+ ++     + RI DA     EM +
Sbjct: 307 TTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSE 366

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
             + AD    N LI A+CK     +  +    M   G+ PNS T   +++G     E + 
Sbjct: 367 RKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELES 426

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  +   M+      +  TY+ ++  +C+    +    +      K F  ++  +  LI 
Sbjct: 427 AKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIR 486

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            LC    +  +  LL  M  KGI      +  L     K G  +    + E+M
Sbjct: 487 RLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEM 539



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 2/231 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFN 155
           V  Y+S++  L    + +    L++ M  +++      C  ++  Y ++  +  A+    
Sbjct: 338 VVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKT 397

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M + G+T N   +  L+   CK+  +  A+E+   M D  F P+ +TYS +++ + K  
Sbjct: 398 KMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKD 457

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N      +  E +  G   +I  Y  ++  LCK  R++ A  ++  M+       S IY+
Sbjct: 458 NTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEGKGISGDSVIYT 517

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            L  +Y        A D   EM +  ++  V +Y          NK   ++
Sbjct: 518 SLAFSYWKSGNTNAASDMLEEMARRRLMITVKIYRCFSALDASQNKVSQMF 568


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 193/394 (48%), Gaps = 6/394 (1%)

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMR 139
           F FF+WA++Q  Y H+   +  M+  L++ R +     +V  M  + +      F  +M 
Sbjct: 112 FEFFRWADRQWKYRHAPEVFDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQFAHLML 171

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-P 198
            Y+R  K+  A+    +MQK G   ++   N  ++ L  +  V KA E  + M+   + P
Sbjct: 172 SYSRAGKLRSAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDP 231

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D  TY+ L++G      +  A E+   M+  GC PD ++Y  ++  LCK  RV E   ++
Sbjct: 232 DVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLL 291

Query: 259 KSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           + M  D+ +  P    Y++L+H        ++A+    E E      D   Y+A++ +FC
Sbjct: 292 ERMRNDAGIF-PDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFC 350

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADAD 375
              +      ++ +M SKG  P+  T + +++G    GE D+A ++ + M K  C+ +  
Sbjct: 351 LNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTV 410

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           T+T ++   C+ G+  +A+++    + + + PS  T+SV+++G   +G + +SC ++  M
Sbjct: 411 THTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQM 470

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
           ++KG  P+      L   L KE +    K   E+
Sbjct: 471 LQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQ 504



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 168/344 (48%), Gaps = 4/344 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNV 156
           +Y +++  L K ++   +W+L+  MR    +  +  T+ +++   A+    +EA+     
Sbjct: 270 SYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRE 329

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
            +      +   ++ ++ + C +  + +A+EI   M  +   PD  TYS +++G+ +   
Sbjct: 330 SEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGE 389

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L +AR++ + M   GC P+ VT+  +++ LCK G+  EA  ++   +     P+   YSV
Sbjct: 390 LDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSV 449

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H +  E ++ ++ D  ++M + G        N LI A CK  K       ++   SKG
Sbjct: 450 IMHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKG 509

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
              N      +++G   +G+ + A  +   M +     D  TYT+++    + G++++A 
Sbjct: 510 CFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEAT 569

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            + + M  +  +P+  T+  +I+  C+KG V D   LL+ M+ K
Sbjct: 570 ALVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTK 613



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 14/283 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + +++  L K+ +    W+L+N    +       T+ +IM  + R  K+ E+      M 
Sbjct: 412 HTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQML 471

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G        N L+ ALCK +   +A++  + C       +   ++ ++ G+ +  +L 
Sbjct: 472 QKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLE 531

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  +M  T  +PD+VTY ++VD L + G++ EA  +V+ M +    PT   Y  ++
Sbjct: 532 SALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPTPVTYRTVI 591

Query: 278 HTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           H Y  +  +ED ++   +M  K G     + YN +I   C   K    Y +L  +     
Sbjct: 592 HRYCEKGAVEDLLNLLDKMLTKQGF---SSAYNQVIEKLCAFGKLSEAYNLLSKVLRSAS 648

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM--------IKLCE 371
             +++TC+I+++  + RG   ++Y V  RM        +KLC+
Sbjct: 649 KRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIPDLKLCQ 691


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 167/332 (50%), Gaps = 4/332 (1%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            ++ T   ++  + +  + +EAV   + M  +G   N+  +N +++ LCK++++  A E+F
Sbjct: 673  SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 732

Query: 190  DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             CM+ + I  D+ TY+ L+ G         A  + R+MV    +P+++ +  ++D   K 
Sbjct: 733  YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 792

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G + EA  + K M      P  F Y+ L++ + +   + DA   F  M   G   DV  Y
Sbjct: 793  GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTY 852

Query: 309  NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            N LI  FCK+ + ++  ++  +M  +G+  ++ T N +++G    G+ + A +VF RM+ 
Sbjct: 853  NTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVD 912

Query: 369  LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
             C    D  TY +++   C  G++EKA  + + ++       + T++++I GLC    + 
Sbjct: 913  -CGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLK 971

Query: 427  DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            ++  L   +  KG++P    +  +   L ++G
Sbjct: 972  EAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 1003



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 173/351 (49%), Gaps = 3/351 (0%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAV 151
           YE S+  + S++     + +    + LV  M ++    NV  +  ++    +  ++  A+
Sbjct: 137 YEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIAL 196

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW 210
              N M+K G+  ++  +N LL+ LC S     A  +  D MK    PD  T++ L++ +
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K  NL  A+E+++EM+ +  +P+ VTY  +++ LC  GR+ +A      M S  C P  
Sbjct: 257 VKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNV 316

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+  +     +++ +  F  M   G  AD+  YN LI  +C+  K +    +   
Sbjct: 317 VTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCW 376

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGE 389
           M S+ V P+  T  I+L+GL   GE + A   F  M +  +      Y +MI   C+  +
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           +EKA++++  + ++   P   T++++I GLC  G   ++  L+  M E+GI
Sbjct: 437 VEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 156/331 (47%), Gaps = 2/331 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ TF  ++  +  V ++ +A     +M K G   N+  +N L+  LCK+  +  A E+ 
Sbjct: 140 SIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELL 199

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+ + +  D  TY+ LL G         A  + R+M+    NPD+VT+  ++DV  K 
Sbjct: 200 NEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ 259

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +DEA  + K M  +   P +  Y+ +++   +  R+ DA  TF  M   G   +V  Y
Sbjct: 260 GNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY 319

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI  FCK        ++ + M+ +G   +  T N +++G    G+   A  +F  M+ 
Sbjct: 320 NTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVS 379

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           +    D  T+ +++   C  GE+E A   +  M+       +  ++++I+GLC    V  
Sbjct: 380 RRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEK 439

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +  L   +  +G++P   T+  +   L K G
Sbjct: 440 AWELFCRLPVEGVKPDARTYTIMILGLCKNG 470



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 16/370 (4%)

Query: 76  AGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134
            G  A  F  + EK +  + HS+R   +          + + +++V+   ++ + ++  F
Sbjct: 28  GGAAARAFSDYREKLRTGFLHSIRFEDA----------FALFFEMVH---SQPLPSIVDF 74

Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMK 193
             ++   A +++ E  +Y    M+ YG++ +L +F  L+   C+   +  A  +    MK
Sbjct: 75  TRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMK 134

Query: 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
             + P   T+  LL G+     +  A  +   MV +G  P++V Y  ++D LCK G ++ 
Sbjct: 135 LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNI 194

Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
           AL ++  M+          Y+ L+       R  DA     +M K  I  DV  + ALI 
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEA 372
            F K         + K+M    V PN+ T N I+NGL   G   +A + F  M  K C  
Sbjct: 255 VFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFP 314

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           +  TY  +I  FC+   +++  K+++ M  + F   + T++ LI+G C  G +  +  + 
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374

Query: 433 EDMIEKGIRP 442
             M+ + + P
Sbjct: 375 CWMVSRRVTP 384



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 167/393 (42%), Gaps = 8/393 (2%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           +LE+  N  T     F  A    +Y   +R        L  I+           ++++ +
Sbjct: 548 LLERGNNPETSLSRSFSGASHHHHYRERLR------NELHCIKFDDAFSLFCEMLQSRPI 601

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            ++  F  ++   A++ K +  +Y ++ M+  G++ +L +F  L+   C+   +  A  +
Sbjct: 602 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 661

Query: 189 FD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
               MK  F P   T   LL G+ +      A  +   M   G  P++V Y  +++ LCK
Sbjct: 662 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 721

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              ++ AL +   M+    R  +  Y+ L+       R  DA     +M K  I  +V  
Sbjct: 722 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 781

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           + ALI  F K         + K+M  + V PN  T N ++NG    G   +A  +F  M+
Sbjct: 782 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 841

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K C  D  TY  +I  FC+   +E   K++  M  +  +    T++ LI+G C  G ++
Sbjct: 842 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 901

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +  +   M++ G+ P   T+  L   L   G+
Sbjct: 902 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 934



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G + D+ ++ I++   C+  R+  AL ++  M      P+   +  L+H + + NRI DA
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDA 160

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
               + M K+G   +V +YN LI   CK  +      +L +M  KG+  +  T N +L G
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 350 LIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   G   +A R+ R M+K     D  T+T +I +F + G L++A +++K M      P+
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             T++ +INGLC  G + D+    + M  KG  P+  T+  L
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTL 322



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 149/323 (46%), Gaps = 52/323 (16%)

Query: 54   LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK--------QQNYEHSVRAYHSMIE 105
            +++ GIR        ++    N+G       +W +         ++  + +V  + ++I+
Sbjct: 735  MEKKGIRADAVTYNTLISGLSNSG-------RWTDAARLLRDMVKRKIDPNVIFFTALID 787

Query: 106  SLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
            +  K        +L   M R   + NV T+  ++  +     + +A Y F++M   G   
Sbjct: 788  TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP 847

Query: 165  NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF 223
            ++  +N L++  CKSK V    ++F  M  +  + D+ TY+ L+ G+ +   L  A+++F
Sbjct: 848  DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 907

Query: 224  REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
              MVD G +PDIVTY I++D LC  G++++AL +V+                        
Sbjct: 908  NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVE------------------------ 943

Query: 284  NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
                       +++K+ +  D+  YN +I   C+ +K K  + + + +  KGV P++   
Sbjct: 944  -----------DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 992

Query: 344  NIILNGLIGRGETDEAYRVFRRM 366
              +++GL  +G   EA ++ RRM
Sbjct: 993  ITMISGLCRKGLQREADKLCRRM 1015



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 1/242 (0%)

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  +F EMV +   P IV +  ++       R +  +   + M+        + +++L+H
Sbjct: 55  AFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH 114

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            +   +R+  A+    +M K G    +  + +L+  FC  N+  + + ++  M   G  P
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEP 174

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           N    N +++GL   GE + A  +   M K    AD  TY  ++   C  G    A ++ 
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           + M  +   P + TF+ LI+    +G + ++  L ++MI+  + P+  T+  +   L   
Sbjct: 235 RDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMH 294

Query: 458 GR 459
           GR
Sbjct: 295 GR 296



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 1/222 (0%)

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R ++A  +   M  +   P+   ++ L+       R E  +    +ME  GI  D+  + 
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI  FC+ ++      VL  M   G  P+  T   +L+G        +A+ +   M+K 
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS 170

Query: 370 C-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             E +   Y  +I   C+ GEL  A ++   M+ K     + T++ L+ GLC  G  SD+
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             +L DM+++ I P   TF  L  + +K+G  D  + L ++M
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEM 272



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 2/179 (1%)

Query: 97   VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
            V  Y+++I    K ++ +    L   M  + ++ +  T+  ++  Y +  K+  A   FN
Sbjct: 849  VVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 908

Query: 156  VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
             M   GV+ ++  +N LL  LC +  + KA  +  D  K     D  TY+I+++G  +  
Sbjct: 909  RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 968

Query: 215  NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             L  A  +FR +   G  PD + Y  M+  LC+ G   EA  + + M      P+  IY
Sbjct: 969  KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 1027


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 189/392 (48%), Gaps = 7/392 (1%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI--MWDL-VNAMRTKRMLNVETFCIIMRK 140
           F+   K + +   +R   +++  + ++R  +I   W L +  + +     +  F ++M  
Sbjct: 199 FRLVTKNK-FPVPIRGCENLLRRVVRLRPVEIERSWALYLEVLDSGYPPKIYFFNVLMHG 257

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PD 199
           + +   V  A   F+ + K G+   + +FN L+S  CKS +V +   +   M+   + PD
Sbjct: 258 FCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPD 317

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             T+S L+ G  K+  L     +F EM   G  P+ VT+  ++D  CK G+VD AL   +
Sbjct: 318 VFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQ 377

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M +   RP    Y+ L++       +++A     EM  +G+  D   +  LI   CK  
Sbjct: 378 MMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDG 437

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYT 378
             ++   + + M  +G+  +      +++GL   G   +A R+   M+    + D  TYT
Sbjct: 438 DMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYT 497

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           M+I  FC+ G+++  FK+ K M+    +P + T++ L+NGLC +G + ++ +LL+ M+  
Sbjct: 498 MVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNV 557

Query: 439 GIRPSGETFGKLRKLLIKEGRE-DVLKFLQEK 469
           G+ P+  T+  L     K G   DV  F  EK
Sbjct: 558 GVAPNDITYNILLDGHSKHGSSVDVDIFNSEK 589



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 110/232 (47%), Gaps = 5/232 (2%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEE 149
           Q     +  Y+++I  L K+   +    LVN M    +   + TF  ++    +   +E 
Sbjct: 382 QGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMES 441

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLE 208
           A+     M + G+  +  AF  L+S LC+   V  A  +  D +   F PD  TY+++++
Sbjct: 442 ALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVID 501

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
            + K  ++    ++ +EM   G  P +VTY  +++ LCK G++  A  ++ +M +    P
Sbjct: 502 CFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAP 561

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
               Y++L+  +   ++   +VD  +   + G++ D A Y AL+    K +K
Sbjct: 562 NDITYNILLDGH---SKHGSSVDVDIFNSEKGLVTDYASYTALVNESSKTSK 610


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 166/318 (52%), Gaps = 5/318 (1%)

Query: 146 KVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTY 203
           + ++AV  F    + G+ + +  +FN ++  +C+  N +KA E+ + M +    PD+ T+
Sbjct: 197 RAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITH 256

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +IL++G  +   + R  ++ R +   G C P++VTY  ++   CKAGR+++AL +   M 
Sbjct: 257 NILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDML 316

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
            +  RP +  Y+VL++ YG    +E AV  + ++       DV  +++LI  +C+  +  
Sbjct: 317 ESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLD 376

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMM 380
           +  R+ K+M    + PN  T +II++ L  +  + EA    R +    +    T  Y  +
Sbjct: 377 DAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPV 436

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I + C+GG++E+A  +   M+ K   P  +T+++LI G C KG + ++  L   M+E G 
Sbjct: 437 IDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGC 496

Query: 441 RPSGETFGKLRKLLIKEG 458
           RP   T       ++K G
Sbjct: 497 RPDKITVNSFISCVLKAG 514



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 151/307 (49%), Gaps = 6/307 (1%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           +++ +++ LC+S   R A ++FD M D+  ++PD+  +S +         L  A  +  +
Sbjct: 113 SYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTK 172

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRPTSFIYSVLVHTYGVEN 284
               G   +   Y  ++++L   GR  +A+ + +S +   +  P  + ++V++       
Sbjct: 173 ASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVG 232

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTC 343
             + A++    M + G   D   +N L+   C+A +    + +L+ +   GV  PN  T 
Sbjct: 233 NFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTY 292

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             +++G    G  ++A  V+  M++     +  TY ++I  + +  ++E A ++++ + L
Sbjct: 293 TSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLIL 352

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-D 461
           +R  P + TFS LI+G C  G + D+  + ++M +  I+P+  TF  +   L K+ R  +
Sbjct: 353 RRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAE 412

Query: 462 VLKFLQE 468
            L FL+E
Sbjct: 413 ALGFLRE 419



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 4/260 (1%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           +++ L + +Q     DL+  ++     M NV T+  ++  Y +  ++E+A+  +N M + 
Sbjct: 259 LVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLES 318

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   N   +N L++   K+ ++  A  ++   +  R  PD  T+S L++G+ +   L  A
Sbjct: 319 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDA 378

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVH 278
             I++EM      P++ T+ I++  LCK  R  EALG ++ ++      P +FIY+ ++ 
Sbjct: 379 MRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVID 438

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 ++E+A     +ME+ G   D   Y  LI   C   +      +   M   G  P
Sbjct: 439 ILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRP 498

Query: 339 NSRTCNIILNGLIGRGETDE 358
           +  T N  ++ ++  G  +E
Sbjct: 499 DKITVNSFISCVLKAGMPNE 518


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 176/375 (46%), Gaps = 37/375 (9%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++  + R  +V+ A     +M   G+  NL  FN +++ +CK+  +  A+++F
Sbjct: 184 NVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 243

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D  M++   PD  +Y+ L+ G+ K      A  +F EM   G  PD+VT+  ++ V+CKA
Sbjct: 244 DEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 303

Query: 249 GRV-----------------------------------DEALGIVKSMDSTVCRPTSFIY 273
           G +                                   D+AL  V+ M     +P+   Y
Sbjct: 304 GNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCY 363

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L++ Y +  R+++A +   EME  G+  DV  Y+ +I A+CK     + + + + M  
Sbjct: 364 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 423

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           KGV P++ T + ++  L       +A+ +F+ MIKL  + D  TYT +I   C+ G +E+
Sbjct: 424 KGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVER 483

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  +   M     +P + T+SVLINGL       ++  LL  +  +   P+   +  L  
Sbjct: 484 ALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMH 543

Query: 453 LLIKEGREDVLKFLQ 467
              K   + VL  L+
Sbjct: 544 CCRKAELKSVLALLK 558



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 182/383 (47%), Gaps = 6/383 (1%)

Query: 92  NYEHSVRAYHSMIESL--AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
            Y  SV AY++++ +L  A +   +  +D  + +      NV T+ I++R        +E
Sbjct: 111 GYVPSVLAYNAVLLALSDASLTSARRFFD--SMLSDGVAPNVYTYNILIRALCGRGHRKE 168

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A+     M+  G   N+  +N L++A  ++  V  A+ +   M D  + P+  T++ ++ 
Sbjct: 169 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVN 228

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G  K   +  AR++F EM+  G  PD V+Y  +V   CKAG   EAL +   M      P
Sbjct: 229 GMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 288

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               ++ L+H       +E AV    +M + G+  +   + ALI  FCK     +    +
Sbjct: 289 DVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAV 348

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQG 387
           + M    + P+    N ++NG    G  DEA  +   M  K  + D  TY+ +I  +C+ 
Sbjct: 349 RGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKN 408

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            +   AF++ + M  K  +P   T+S LI  LC++  +SD+ VL ++MI+ G++P   T+
Sbjct: 409 CDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTY 468

Query: 448 GKLRKLLIKEGREDVLKFLQEKM 470
             L     KEG  +    L +KM
Sbjct: 469 TSLIDGHCKEGNVERALSLHDKM 491



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 186/392 (47%), Gaps = 18/392 (4%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+     V  + S+I  + K    +    LV  MR + + +N  TF  ++  + +   ++
Sbjct: 283 QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 342

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+     M++  +  ++  +N L++  C    + +A+E+   M+ + + PD  TYS ++
Sbjct: 343 DALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTII 402

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
             + K+ +   A E+ ++M++ G  PD +TY  ++ VLC+  R+ +A  + K+M     +
Sbjct: 403 SAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQ 462

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  F Y+ L+  +  E  +E A+    +M K G+L DV  Y+ LI    K+ +     ++
Sbjct: 463 PDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL 522

Query: 328 L-KDMNSKGVAPNSR--------------TCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
           L K  + + +  N++              +   +L G   +G  +EA +V++ M+ +   
Sbjct: 523 LFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 582

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D   Y+++I   C+ G + KA    K M  + F P+  +   LI GL + G+V ++  +
Sbjct: 583 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQV 642

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVL 463
           ++ ++        E    L  L + EG  D +
Sbjct: 643 IQQLLNCCSLADAEASKALIDLNLNEGNVDAV 674



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 156/375 (41%), Gaps = 29/375 (7%)

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
           H  +   A++ Q  IM D+V            TF  ++    +   +E AV     M++ 
Sbjct: 272 HEALSVFAEMTQKGIMPDVV------------TFTSLIHVMCKAGNLEWAVTLVRQMRER 319

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRA 219
           G+  N   F  L+   CK   +  A      M+  R  P    Y+ L+ G+     +  A
Sbjct: 320 GLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEA 379

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
           RE+  EM   G  PD+VTY  ++   CK      A  + + M      P +  YS L+  
Sbjct: 380 RELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRV 439

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
              E R+ DA   F  M K G+  D   Y +LI   CK    +    +   M   GV P+
Sbjct: 440 LCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPD 499

Query: 340 SRTCNIILNGLIGRGETDEAYRV---------------FRRMIKLC-EADADTYTMMIKM 383
             T ++++NGL       EA ++               +  ++  C +A+  +   ++K 
Sbjct: 500 VVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKG 559

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC  G + +A KV++ M  + +      +SVLI+G C  G V  +    + M+++G  P+
Sbjct: 560 FCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPN 619

Query: 444 GETFGKLRKLLIKEG 458
             +   L + L + G
Sbjct: 620 STSTISLIRGLFENG 634



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +Q   + SV  Y+++I     + +     +L++ M  K +  +V T+  I+  Y +    
Sbjct: 352 RQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 411

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
             A      M + GV  +   ++ L+  LC+ K +  A  +F  M K    PD  TY+ L
Sbjct: 412 HSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 471

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G  K+ N+ RA  +  +MV  G  PD+VTY ++++ L K+ R  EA  ++  +     
Sbjct: 472 IDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEP 531

Query: 267 RPTSFIYSVLVH------------------TYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            P +  Y  L+H                    G+ N  +    + L+   N    D ++Y
Sbjct: 532 IPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN---LDGSVY 588

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + LI   C+A          K M  +G APNS +   ++ GL   G   EA +V ++++ 
Sbjct: 589 SVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLN 648

Query: 369 LCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
            C  ADA+    +I +    G ++    V   M     +PS
Sbjct: 649 CCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 689


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 177/380 (46%), Gaps = 38/380 (10%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           +N  T  I++  Y +  + ++     + M+K  V  ++   N ++ A  ++ +   A  +
Sbjct: 154 VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 213

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
            D M  + + P   TY+ +L+G  +     +A E+F+EM D G  PD+ ++ I++   C+
Sbjct: 214 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G ++EAL I K M     +P    +S L+  +    +++ A+    EM   G++ D  +
Sbjct: 274 VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI 333

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG--------------- 352
           Y  +IG FC+A    +  RV  +M   G  P+  T N +LNGL                 
Sbjct: 334 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 393

Query: 353 --------------------RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
                                G+ D+A ++F  M+ +    D  TY  +I   C+ G+L+
Sbjct: 394 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 453

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           KA  +W  M  +   P+  T+S+LI+  C+KG V D+   L++MI KGI P+  T+  + 
Sbjct: 454 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 513

Query: 452 KLLIKEGR-EDVLKFLQEKM 470
           K   + G      KFLQ+ M
Sbjct: 514 KGYCRSGNVSKGQKFLQKMM 533



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 186/385 (48%), Gaps = 3/385 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
            +  Y+S+++ L +   +   W++   M    +  +V +F I++  + RV ++EEA+  +
Sbjct: 225 GIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIY 284

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKD 213
             M+  G+  +L +F+ L+    +   +  A      M+    +PD   Y++++ G+ + 
Sbjct: 285 KEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRA 344

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +  EMV  GC PD+VTY  +++ LCK  R+ +A G++  M      P    +
Sbjct: 345 GLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTF 404

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H Y +E +++ A+  F  M    +  D+  YN LI   C+         +  DM+S
Sbjct: 405 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS 464

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           + + PN  T +I+++    +G+ ++A+     MI K    +  TY  +IK +C+ G + K
Sbjct: 465 REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSK 524

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
             K  + M + +  P + T++ LI+G   +  + D+  LL  M ++ ++P   T+  L  
Sbjct: 525 GQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLIN 584

Query: 453 LLIKEGREDVLKFLQEKMNLLVKEP 477
                G      ++ EKM     EP
Sbjct: 585 GFSVHGNVQEAGWIFEKMCAKGIEP 609



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 164/311 (52%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++  + R   + +A+   + M   G   ++  +N LL+ LCK + +  A+ + + M+
Sbjct: 334 YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 393

Query: 194 DRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R +P D  T++ L+ G+  +  L +A ++F  M++    PDIVTY  ++D +C+ G +D
Sbjct: 394 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 453

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M S    P    YS+L+ ++  + ++EDA     EM   GIL ++  YN++I
Sbjct: 454 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 513

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
             +C++       + L+ M    V+P+  T N +++G I   +  +A+++   M K   +
Sbjct: 514 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 573

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY M+I  F   G +++A  +++ M  K   P  +T+  +ING    G   ++  L
Sbjct: 574 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 633

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 634 HDEMLQRGFAP 644



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 2/283 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++++  L K R+      L+N MR + +  ++ TF  ++  Y    K+++A+  F+
Sbjct: 366 VVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFD 425

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M    +  ++  +N L+  +C+  ++ KA +++D M  R I P+  TYSIL++   +  
Sbjct: 426 TMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKG 485

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A     EM++ G  P+I+TY  ++   C++G V +    ++ M      P    Y+
Sbjct: 486 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 545

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+H Y  E+++ DA      MEK  +  DV  YN LI  F      +    + + M +K
Sbjct: 546 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 605

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
           G+ P+  T   ++NG +  G + EA+++   M++   A  D +
Sbjct: 606 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 149/325 (45%), Gaps = 13/325 (4%)

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP------DSKTYSILLEGWGKDPNL 216
           T     F+ L+    +S+  R+A E F  + D  +P      ++   ++   GW   P+L
Sbjct: 83  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGW---PHL 139

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A + +R +  +    +  T  IMV   CKA   D+   ++  M+     P    ++V+
Sbjct: 140 --AADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVM 197

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V         E A+     M   G+   +  YN+++   C++  +   + V K+M+  GV
Sbjct: 198 VDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGV 257

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
           AP+ R+  I++ G    GE +EA ++++ M  +  + D  +++ +I +F + G+++ A  
Sbjct: 258 APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMA 317

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
             + M+    +P    ++++I G C  G++SD+  + ++M+  G  P   T+  L   L 
Sbjct: 318 YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 377

Query: 456 KEGR-EDVLKFLQEKMNLLVKEPLC 479
           KE R  D    L E     V   LC
Sbjct: 378 KERRLLDAEGLLNEMRERGVPPDLC 402



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 111/249 (44%), Gaps = 37/249 (14%)

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-------------- 302
           IV S+  +   P   ++ +L+ TY    +  +A + F  +  + +               
Sbjct: 73  IVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALS 132

Query: 303 -------------------ADVAMY--NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
                              ++V  Y  N ++  +CKA +F  V  V+ +M  + V P+  
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
           T N++++     G+ + A  +   M+ K  +    TY  ++K  C+ G  +KA++V+K M
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 252

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
                 P + +F++LI G C  G + ++  + ++M  +GI+P   +F  L  L  + G+ 
Sbjct: 253 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKM 312

Query: 461 D-VLKFLQE 468
           D  + +L+E
Sbjct: 313 DHAMAYLRE 321


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 192/383 (50%), Gaps = 23/383 (6%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           N + +VR Y  ++ES            +V+A+    MLN   FC       R  K++E+ 
Sbjct: 307 NIDGAVRVYKEIVESSL----------VVDAVTHNAMLN--GFC-------RAGKIKESF 347

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
             + VM K    Q + ++N L+  L ++  V +A  I++ + K    P+S TY +L+ G 
Sbjct: 348 ELWMVMGKENC-QTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGL 406

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            K+  L +A +IF+E  D     D   Y  MVD LCK GR+DEA+ IV  MD    +   
Sbjct: 407 CKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDP 466

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
            + + L++ +   +++EDA++ F EME  G    +  YN LI   CKA +F   Y  +K+
Sbjct: 467 HVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKE 526

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
           M  K   P+  TC+++++GL    + + A  ++++ + K  + D   Y +++   C   +
Sbjct: 527 MLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCK 586

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           LE A +++ +MK    +P++ T + L+ GL        +  + + +++ G+ P   ++  
Sbjct: 587 LEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNI 646

Query: 450 LRKLLIKEGR-EDVLKFLQEKMN 471
             K L    R  D ++FL + +N
Sbjct: 647 TIKGLCSCSRISDAIEFLNDALN 669



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 176/363 (48%), Gaps = 2/363 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+ MI  L K  ++    ++   M + +R  ++ T+  ++        ++ AV  +
Sbjct: 256 NVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVY 315

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             + +  +  +    N +L+  C++  ++++ E++  M         +Y+IL++G  ++ 
Sbjct: 316 KEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENG 375

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I+  +   GC P+  TYG+++  LCK GR+++AL I K  +    +  ++ YS
Sbjct: 376 KVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYS 435

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            +V     E R+++A+    +M+K G   D  + N LI  F +A+K ++     ++M  K
Sbjct: 436 SMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECK 495

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G +P   + N ++ GL       EAY   + M+ K  + D  T ++++   CQ  ++E A
Sbjct: 496 GCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMA 555

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +W+    K F P +  +++L++GLC    + D+  L   M      P+  T   L + 
Sbjct: 556 LNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEG 615

Query: 454 LIK 456
           L K
Sbjct: 616 LYK 618



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 175/372 (47%), Gaps = 46/372 (12%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMR-----TKRMLNVETFCIIMRKYARVQKVEEAV 151
           VR+Y++++ +  ++ +    WD   +            N++T+ I+++   + Q++E+A+
Sbjct: 116 VRSYNTLLNAFVELNE----WDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAI 171

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGW 210
              + M    +  ++ ++  L++ + K  ++  A ++FD M  R  + D   Y++L++G+
Sbjct: 172 SLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGF 231

Query: 211 GKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
            K  +  + +EI+  +V D    P++VTY IM++ LCK GR DE                
Sbjct: 232 FKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDE---------------- 275

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
                              +++ +  M KN    D+  Y++LI   C+A       RV K
Sbjct: 276 -------------------SLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYK 316

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389
           ++    +  ++ T N +LNG    G+  E++ ++  M K       +Y ++IK   + G+
Sbjct: 317 EIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGK 376

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +E+A  +W+ +  K   P   T+ VLI+GLC  G ++ +  + ++  +   +     +  
Sbjct: 377 VEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSS 436

Query: 450 LRKLLIKEGRED 461
           +   L KEGR D
Sbjct: 437 MVDGLCKEGRMD 448



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 124/255 (48%), Gaps = 2/255 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY SM++ L K  +      +VN M  +   L+      ++  + R  K+E+A+  F  M
Sbjct: 433 AYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM 492

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDPNL 216
           +  G +  + ++N L+  LCK++   +A   + + ++  + PD  T S+L++G  ++  +
Sbjct: 493 ECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKI 552

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++++ +D G  PDI  Y I++  LC   ++++AL +   M  + C P     + L
Sbjct: 553 EMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTL 612

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +         E A + +  + K+G+  D+  YN  I   C  ++  +    L D  ++G+
Sbjct: 613 MEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGI 672

Query: 337 APNSRTCNIILNGLI 351
            P + T NI++   +
Sbjct: 673 LPTAVTWNILVRAAV 687



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 304 DVAMYNALIGAFCK---ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           DVA+   +I A+ K   +NK  + ++ ++D+   G  P  R+ N +LN  +   E D A 
Sbjct: 81  DVAL--TVIKAYAKNKMSNKALDTFQNMQDIF--GCKPGVRSYNTLLNAFVELNEWDRAE 136

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
              R    +    +  TY ++IK+ C+  ++EKA  +  +M  +   P + ++  LING+
Sbjct: 137 SFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGM 196

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
              G +  +  + ++M  +G+      +  L     K G  D  K + E++
Sbjct: 197 VKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERL 247


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 166/318 (52%), Gaps = 5/318 (1%)

Query: 146 KVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTY 203
           + ++AV  F    + G+ + ++ +FN ++  +C+  N++KA E+ + M +    PD+ T 
Sbjct: 61  RAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQ 120

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +IL++G  +   + +  E+ R +   G C P++VTY  ++   CKAGR+ +A  +   M 
Sbjct: 121 NILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDML 180

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
            +  RP +  Y+VL++ YG    +E AV  + ++  +    DV  +N+LI  +C+  +  
Sbjct: 181 QSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLD 240

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMM 380
           +  R+  +M    + PN  T +II++ L  +  + EA  + R +    +    T  Y  +
Sbjct: 241 DAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPI 300

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I + C+GG++++A  +   M+ K   P  +T+++LI G C KG + ++  L   M+E G 
Sbjct: 301 IDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGC 360

Query: 441 RPSGETFGKLRKLLIKEG 458
           RP   T       ++K G
Sbjct: 361 RPDNITINSFISCVLKAG 378



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 3/236 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y S+I    K  + +  + + N M ++    N  T+ +++  Y +   +E AV  +
Sbjct: 152 NVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMY 211

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             +  +    ++  FN L+   C+   +  A  I+  M    I P+  T+SI++      
Sbjct: 212 WQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQ 271

Query: 214 PNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
                A  + RE+ +     P    Y  ++D+LCK G+VDEA  IV  M+   C P  + 
Sbjct: 272 NRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYT 331

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
           Y++L+  + ++ RI +AV  F +M + G   D    N+ I    KA     V++++
Sbjct: 332 YTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIM 387



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 6/245 (2%)

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           +G  PD   +  +      AG +D A  ++       CR   + Y+ L++T     R +D
Sbjct: 5   SGYVPDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQD 64

Query: 289 AVDTFLEMEKNGILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           AV  F    ++G+ + DV  +N +I   C+    +    +++ M   G +P++ T NI++
Sbjct: 65  AVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILV 124

Query: 348 NGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +GL    + ++ + V RR+ +  +C  +  TYT +I  +C+ G ++ AF V+  M     
Sbjct: 125 DGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGT 184

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCV-LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVL 463
            P+  T++VLING   K +  +S V +   +I     P   TF  L     + G+ +D +
Sbjct: 185 RPNTVTYNVLINGY-GKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAM 243

Query: 464 KFLQE 468
           +   E
Sbjct: 244 RIWME 248



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 139/311 (44%), Gaps = 41/311 (13%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEA 150
           Y   V +++ +I+ + ++   Q   +LV  M T+   + +T    I++    RV++V + 
Sbjct: 78  YSPDVWSFNVVIKGVCRVGNLQKALELVERM-TEFGCSPDTITQNILVDGLCRVKQVNKG 136

Query: 151 VYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLE 208
                 +Q+ GV   N+  +  ++S  CK+  ++ A  ++ D ++    P++ TY++L+ 
Sbjct: 137 HEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLIN 196

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS----- 263
           G+GK  ++  A  ++ +++   C PD+VT+  ++D  C+ G++D+A+ I   M       
Sbjct: 197 GYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQP 256

Query: 264 ----------TVCR---------------------PTSFIYSVLVHTYGVENRIEDAVDT 292
                     ++C                      P +FIY+ ++       ++++A   
Sbjct: 257 NVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLI 316

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             +ME+ G   D   Y  LI   C   +      +   M   G  P++ T N  ++ ++ 
Sbjct: 317 VTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLK 376

Query: 353 RGETDEAYRVF 363
            G  +E +++ 
Sbjct: 377 AGMPNEVHQIM 387


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 182/386 (47%), Gaps = 6/386 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K+ N    + +Y+++I  L K ++ +   DL+  M       N  T+CI+M    +  +V
Sbjct: 2   KRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRV 61

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           EEA+     M++ G+  ++  ++ L+S  C    + + + +FD M ++ I P+   YS L
Sbjct: 62  EEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCL 121

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K      A  +   M + G  PD+ TY  M+  LCK GR  +AL +   M     
Sbjct: 122 INGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P++  Y+VL++    E  I DA   F  M + G   +V  YN LI   C   K     +
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 327 VLKDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKM 383
           +   +   G  V P+  T N ++ GL   G  D+A  ++  MI+     +  T  ++I  
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGE 301

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + + G ++KA ++WK +     +PS  T+SV+I+G C   +++ +  L   M   G+ P+
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPT 361

Query: 444 GETFGKLRKLLIKEGR-EDVLKFLQE 468
              +  L   L KE   E   +  QE
Sbjct: 362 LFDYNTLMASLCKESSLEQARRLFQE 387



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 121/216 (56%), Gaps = 1/216 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++  + ++  +  A   F+ M+  G++  L  +N L+++LCK  ++ +A+ +F  M
Sbjct: 329 TYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEM 388

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K+    PD+ +++I+++G  K  ++  A+E+  +M   G  PD  TY   ++ L K G++
Sbjct: 389 KESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQM 448

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           +EA G   SM ++   P + +Y  L+  +G+ + IE+ ++   +M   G++ D+ + N++
Sbjct: 449 EEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSI 508

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +   C + +  +V  +L + +S+     S +C+ +L
Sbjct: 509 LTFLCNSAEHLHVMELLPNFSSESSGGTSISCDKLL 544



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 154/337 (45%), Gaps = 5/337 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVE 148
           ++  E S   Y+ +I  L K       + +   M  K + L V ++  ++       K++
Sbjct: 178 EKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLD 237

Query: 149 EAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSI 205
           EA+  F+ + + G  V  ++  FN ++  LCK   + KA EI+D M +R    +  T  I
Sbjct: 238 EAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHI 297

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+  + K   + +A E+++ +   G  P   TY +M+D  CK   ++ A G+   M  + 
Sbjct: 298 LIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISG 357

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             PT F Y+ L+ +   E+ +E A   F EM+++    D   +N +I    KA    +  
Sbjct: 358 LSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAK 417

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
            +L DM   G+ P++ T +  +N L   G+ +EA   F  MI      D   Y  +IK F
Sbjct: 418 ELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGF 477

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
               E+E+   + + M     I  +   + ++  LC+
Sbjct: 478 GLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCN 514



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 135/286 (47%), Gaps = 5/286 (1%)

Query: 75  NAGTL--AFCFFKWAEKQQNY-EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-N 130
           N G L  A   F    +  NY E  V  ++++I+ L K  +     ++ + M  +    N
Sbjct: 232 NNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGN 291

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           + T  I++ +Y +   +++A+  +  + K G+  +   ++ ++   CK   +  A+ +F 
Sbjct: 292 LFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFS 351

Query: 191 CMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            MK     P    Y+ L+    K+ +L +AR +F+EM ++ C PD +++ IM+D   KAG
Sbjct: 352 RMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAG 411

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            +  A  ++  M      P ++ YS  ++      ++E+A   F  M  +GI  D  +Y+
Sbjct: 412 DIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYD 471

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           +LI  F   ++ + V  +L+ M   GV  +    N IL  L    E
Sbjct: 472 SLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAE 517



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M++  IL D+  YN +I   CK  + +    +L +M      PNS T  I+++GL   G 
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            +EA R+   M  K  E D   Y+ +I  FC  G L++   ++  M  K   P++  +S 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE----DVLKFLQEK 469
           LING C KG+  ++  +L  M E+GI+P   T+  +   L K+GR     D+   + EK
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 21/355 (5%)

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           + +QI+ ++   MR   + +  T+  ++    + ++V++A   F  M+K GV  ++  + 
Sbjct: 435 KAFQIVKEM---MRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYT 491

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+ + CK+  + +AQ  FD M+     P+  TY+ LL  + K   L +A +IF  MV  
Sbjct: 492 ILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGD 551

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM----------------DSTVCRPTSFIY 273
            C P+ +TY  ++D LCKAG + +A  +   +                D+    P    Y
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTY 611

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
             LV+      ++ DA D    M   G   +  +Y+AL+  FCK  +  +   V   M  
Sbjct: 612 GALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTK 671

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEK 392
            G  P+  T   +++ +   G  D A +V  +M+K  C  +  TYT M+   C+ GE EK
Sbjct: 672 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEK 731

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           A  +   M+ K   P++ T++ LI+GL   G V     L   M  KG  P+  T+
Sbjct: 732 ALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTY 786



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 154/312 (49%), Gaps = 18/312 (5%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++  + +   +E+A   F+ M+  G + N+  +  LL A  KSK + +A +IF
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN---------------- 232
             M  D   P++ TYS L++G  K   + +A E++ +++ T  N                
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTIS 605

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P++VTYG +V+ LCKA +V +A  ++ +M +  C P   +Y  LV  +     I+ A + 
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           FL M K G L  V  Y +LI    K  +     +VL  M      PN  T   +++GL  
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 353 RGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
            GET++A  +   M  K C  +  TYT +I    + G+++   +++  MK K   P+  T
Sbjct: 726 TGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVT 785

Query: 412 FSVLINGLCDKG 423
           + +LIN  C  G
Sbjct: 786 YRILINHCCAAG 797



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 160/356 (44%), Gaps = 38/356 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++    + QKV +A    + M   G   N   ++ L+   CK   +  AQE+F
Sbjct: 607 NVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVF 666

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M K  ++P   TY+ L++   KD  L  A ++  +M+   CNP++VTY  MVD LCK 
Sbjct: 667 LRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKT 726

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G  ++AL ++  M+   C P    Y+ L+   G   +++  ++ F++M+  G   +   Y
Sbjct: 727 GETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTY 786

Query: 309 NALIGAFCKAN------------------KFKNVYR---------------VLKDMNSKG 335
             LI   C A                   K+   YR               +L++M S  
Sbjct: 787 RILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHD 846

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE----ADADTYTMMIKMFCQGGELE 391
            AP +    ++++     G  + A  + + M+++      A  D +T +I+  C   ++E
Sbjct: 847 TAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVE 906

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +A  ++  M+ +  +P +  F  L+ GL ++   +++  L   + ++G+   G  F
Sbjct: 907 EAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGVNWEGNKF 962



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 19/310 (6%)

Query: 176 LCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           LC      KA +I  + M+  F+PD+ TY+ ++    +   + +A  +F+EM   G NPD
Sbjct: 427 LCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPD 486

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           + TY I++D  CKAG +++A      M S  C P    Y+ L+H Y    ++  A D F 
Sbjct: 487 VYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFH 546

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM----------------NSKGVAP 338
            M  +    +   Y+ALI   CKA + +    V   +                ++  ++P
Sbjct: 547 RMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISP 606

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVW 397
           N  T   ++NGL    +  +A+ +   M+   CE +   Y  ++  FC+ GE++ A +V+
Sbjct: 607 NVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVF 666

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M    ++PS+HT++ LI+ +   G +  +  +L  M++    P+  T+  +   L K 
Sbjct: 667 LRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKT 726

Query: 458 GR-EDVLKFL 466
           G  E  L  L
Sbjct: 727 GETEKALNLL 736



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 167/384 (43%), Gaps = 25/384 (6%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
           MI  L +   +      ++ MR    + NV T+  ++  + + +++       N+M   G
Sbjct: 277 MISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEG 336

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT-YSILLEGWGKDPNLPR-- 218
              + + FN L+   C +++   A ++F+ M     P     Y+I +        LP   
Sbjct: 337 CNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPE 396

Query: 219 ----AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A +++ EM+   C  + +        LC  G+ ++A  IVK M      P +  Y+
Sbjct: 397 LLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYT 456

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++       R++ A   F EM+K G+  DV  Y  LI +FCKA   +       +M S 
Sbjct: 457 KVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSA 516

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G +PN  T   +L+  +   +  +A  +F RM+   C  +A TY+ +I   C+ GE++KA
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKA 576

Query: 394 FKVWK-------------YMKLK---RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +V+              Y + K      P++ T+  L+NGLC    VSD+  LL+ M+ 
Sbjct: 577 CEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLA 636

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
            G  P+   +  L     K G  D
Sbjct: 637 AGCEPNQIVYDALVDGFCKVGEID 660



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 139/338 (41%), Gaps = 42/338 (12%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           ++ N+  +  L++ LCK++ V  A ++ D M      P+   Y  L++G+ K   +  A+
Sbjct: 604 ISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQ 663

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+F  M   G  P + TY  ++D + K GR+D A+ ++  M    C P    Y+ +V   
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
                 E A++    MEK G   +V  Y ALI    KA K      +   M +KG APN 
Sbjct: 724 CKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNY 783

Query: 341 RTCNIILNGLIGRGETD------------------EAYRV--------FRRMIKLCE--- 371
            T  I++N     G  D                  + YR         F   + L E   
Sbjct: 784 VTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEME 843

Query: 372 -----ADADTYTMMIKMFCQGGELEKAFKVWKYM-----KLKRFIPSMHTFSVLINGLCD 421
                  A  Y M+I  F + G LE A ++ K M      L      MHT   LI  LC 
Sbjct: 844 SHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHT--SLIQALCL 901

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              V ++  L  +M  +GI P    F  L K LI+  +
Sbjct: 902 SSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNK 939



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 172/422 (40%), Gaps = 55/422 (13%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK------RMLNVETFCI 136
           FF WAE+Q  Y+H+   Y ++ E L      +    L+  +         R+LNV     
Sbjct: 120 FFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNV----- 174

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD------ 190
           ++R+        EA+     ++ +G   +   +N L+  L  +  V  A  +        
Sbjct: 175 LVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASG 234

Query: 191 -CMKDRFIPDSKTYSILLEG-WGKDPNLPRAREIFR-------EMVD------------- 228
            CM DR    S   ++  EG WG   +L   RE F+       +M+              
Sbjct: 235 FCM-DRSTVGSFAQALCKEGRWGDALDLLE-REDFKLDTVLCTQMISGLMEASLFNEAMS 292

Query: 229 ----TGCN---PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
                 CN   P++VTY  ++    K  ++     I+  M +  C P+  +++ LVHTY 
Sbjct: 293 FLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYC 352

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN------VYRVLKDMNSKG 335
                  A   F  M   G      +YN  IG+ C   +  N        +V ++M    
Sbjct: 353 NAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVAS 412

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
              N          L G G+ ++A+++ + M+ K    DA TYT +I   CQ   ++KAF
Sbjct: 413 CVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAF 472

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            +++ MK     P ++T+++LI+  C  G++  +    ++M   G  P+  T+  L    
Sbjct: 473 LLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAY 532

Query: 455 IK 456
           +K
Sbjct: 533 LK 534



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 2/162 (1%)

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           SV+V   G     E  V  FL  E+  G     A Y+AL       +  +   R+L+++ 
Sbjct: 102 SVVVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIG 161

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELE 391
                   R  N+++     +G   EA     R+        A TY  ++++    G++E
Sbjct: 162 EDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVE 221

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
            AF+V K M    F     T       LC +G   D+  LLE
Sbjct: 222 MAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLE 263


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 172/354 (48%), Gaps = 6/354 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  +I  L      Q   ++++ M R     NV  +  +++ Y +  + E A+    +M
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              GV  +L  +N L+  LC++K V +A+ +   M ++ I P++ TY   +  + K   +
Sbjct: 513 IANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEI 572

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F++M+ +G  P+ V Y I++   C  G   EAL   K M      P    YS +
Sbjct: 573 QVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAI 632

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H+     + ++A+  FL+  K G++ DV +YN+LI  FCK    +   ++  +M   G+
Sbjct: 633 IHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI 692

Query: 337 APNSRTCNIILN--GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
            PN    N ++N  G    G   EA+++F  MI K    D   Y ++I    + G LEKA
Sbjct: 693 NPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKA 752

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
             ++   + K  + S+  F+ LI+  C  G V ++  L +DM++K + P+  T+
Sbjct: 753 LSLFHEAQQKS-VGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTY 805



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 158/328 (48%), Gaps = 2/328 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +EEA+   + M   G+  N+  +N ++  + K+  + KA  +F+ M
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
               I PD+ TY++L++G+ K  ++ +A E+  EM      P   TY +++  LC +  +
Sbjct: 408 LMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDL 467

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A  ++  M     +P  F+Y  L+  Y  E+R E A++    M  NG+L D+  YN L
Sbjct: 468 QKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCL 527

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I   C+A K +    +L DM  KG+ PN+ T    +N     GE   A R F+ M+    
Sbjct: 528 IIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGI 587

Query: 372 ADADT-YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
              +  YT++IK  C  G   +A   +K M  K  IP +  +S +I+ L   G   ++  
Sbjct: 588 VPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMG 647

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +    ++ G+ P    +  L     KEG
Sbjct: 648 VFLKFLKTGVVPDVFLYNSLISGFCKEG 675



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 181/382 (47%), Gaps = 12/382 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVEEAV 151
           +V  Y++MI  +AK  +      L N M    M  +E    T+ +++  Y +   + +A 
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEML---MAGIEPDTWTYNLLIDGYLKSHDMAKAC 436

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
                M+   +T +   ++ L+S LC S +++KA E+ D M ++   P+   Y  L++ +
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
            ++     A E+ + M+  G  PD+  Y  ++  LC+A +V+EA  ++  M     +P +
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y   ++ Y     I+ A   F +M  +GI+ +  +Y  LI   C            K 
Sbjct: 557 HTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKC 616

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M  KG+ P+ R  + I++ L   G+T EA  VF + +K     D   Y  +I  FC+ G+
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLIN--GLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +EKA +++  M      P++  ++ LIN  G C  G ++++  L ++MI KGI P G  +
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736

Query: 448 GKLRKLLIKEGR-EDVLKFLQE 468
             L     KEG  E  L    E
Sbjct: 737 CILIDGCGKEGNLEKALSLFHE 758



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 177/360 (49%), Gaps = 6/360 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQKVEEAVYT 153
           +V  Y ++I++  +  +Y++  +L+  M    +L  + FC   ++    R +KVEEA   
Sbjct: 485 NVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLP-DLFCYNCLIIGLCRAKKVEEAKML 543

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGK 212
              M + G+  N   +   ++   KS  ++ A+  F D +    +P++  Y+IL++G   
Sbjct: 544 LVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCD 603

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             N   A   F+ M++ G  PDI  Y  ++  L K G+  EA+G+      T   P  F+
Sbjct: 604 VGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFL 663

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG--AFCKANKFKNVYRVLKD 330
           Y+ L+  +  E  IE A   + EM  NGI  ++ +YN LI    +CK+      +++  +
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDE 723

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
           M SKG++P+     I+++G    G  ++A  +F    +        +  +I  FC+ G++
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKV 783

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +A +++  M  K+  P++ T+++LI+      ++ ++  L  DM  + I P+  T+  L
Sbjct: 784 IEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL 843



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 208/493 (42%), Gaps = 90/493 (18%)

Query: 60  RVSPEIVEDVLEKFRNAGTLAF-CFFKWAEKQQN---YEHS-------------VRAYHS 102
           +++PEIV  VL+K     ++    FF W+  + +   Y HS             +    +
Sbjct: 82  KLNPEIVCSVLQKSEIDDSVRLQNFFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADN 141

Query: 103 MIESLAKIRQ--YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF------ 154
           M+E L + R+   +I+  LV   R     N+  F I + K+  +  + EA   F      
Sbjct: 142 MLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISE 201

Query: 155 ----------NVMQK-------------YG------VTQNLAAFNGLLSALCKSKNVRKA 185
                     N+M+              YG      +  ++  +  ++ A CK  +V K 
Sbjct: 202 GFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG 261

Query: 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           + +   M+    P+  TY+  + G  +   +  A E+ + M++ G  PD  TY ++VD  
Sbjct: 262 KMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK  R  EA  I +SM S+   P  F Y+ L+  +  E  IE+A+    EM   G+  +V
Sbjct: 322 CKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNV 381

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             YNA+IG   KA +      +  +M   G+ P++ T N++++G +   +  +A  +   
Sbjct: 382 VTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAE 441

Query: 366 M-IKLCEADADTYTMMIKMFCQGGELEKAFKVW--------------------KYMKLKR 404
           M  +       TY+++I   C   +L+KA +V                      Y++  R
Sbjct: 442 MKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESR 501

Query: 405 F---------------IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           +               +P +  ++ LI GLC    V ++ +LL DM EKGI+P+  T+G 
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 450 LRKLLIKEGREDV 462
              L  K G   V
Sbjct: 562 FINLYSKSGEIQV 574



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 187/413 (45%), Gaps = 43/413 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++  + +   Y + I   +K  + Q+       M +  ++ N   + I+++ +  V    
Sbjct: 549 EKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTV 608

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           EA+ TF  M + G+  ++ A++ ++ +L K+   ++A  +F   +K   +PD   Y+ L+
Sbjct: 609 EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD--VLCKAGRVDEALGIVKSMDSTV 265
            G+ K+ ++ +A +++ EM+  G NP+IV Y  +++    CK+G + EA  +   M S  
Sbjct: 669 SGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKG 728

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P  +IY +L+   G E  +E A+  F E ++  +   ++ +N+LI +FCK  K     
Sbjct: 729 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEAR 787

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGET-DEAYRVFR-------------------- 364
            +  DM  K + PN  T  I+++   G+ E  +EA ++F                     
Sbjct: 788 ELFDDMVDKKLTPNIVTYTILIDAY-GKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 846

Query: 365 --------RMIKLCE--------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                   +MI L +         DA  Y +M   +C+ G+  +A K+     ++     
Sbjct: 847 YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLE 906

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              F  LI  LC +  +S    LL +M ++ +  S +T   L     K G ED
Sbjct: 907 DDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNED 959



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 152/347 (43%), Gaps = 75/347 (21%)

Query: 97  VRAYHSMIESLAKI-RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +RAY ++I SL+K  +  + M   +  ++T  + +V  +  ++  + +   +E+A   ++
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 156 VMQKYGVTQNLAAFNGLLS--ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212
            M   G+  N+  +N L++    CKS N+ +A ++FD M  + I PD   Y IL++G GK
Sbjct: 686 EMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGK 745

Query: 213 DPNLPRA----------------------------------REIFREMVDTGCNPDIVTY 238
           + NL +A                                  RE+F +MVD    P+IVTY
Sbjct: 746 EGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTY 805

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG-VENRIEDAVDTFLEME 297
            I++D   KA  ++EA  +   M++    P +  Y+ L+ +Y  + NR +  +  F +ME
Sbjct: 806 TILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFK-MISLFKDME 864

Query: 298 KNGILADVAMYNALIGAFCKANK-----------------------------------FK 322
             GI  D   Y  +  A+CK  K                                     
Sbjct: 865 ARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQIS 924

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            V  +L +M  + ++ +S+TCN +L G    G  DEA +V   M +L
Sbjct: 925 TVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRL 971



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 180/421 (42%), Gaps = 44/421 (10%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           SSP+ +L T   Q+     P+I  +V        ++ F FF       +Y+ +VR + SM
Sbjct: 15  SSPRRILSTFPFQT--TSFPQIWNNV--------SIHFMFFSTNNPFDHYDDTVREF-SM 63

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ----K 159
           I    K + +QI   L+N     R LN E  C +++K     +++++V   N       K
Sbjct: 64  I---LKRKDWQI---LLNNEDNVRKLNPEIVCSVLQK----SEIDDSVRLQNFFHWSSSK 113

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
               Q L +++ L   LC S  + +A    D M ++ +   K            P L   
Sbjct: 114 MSTPQYLHSYSILAIRLCNSGLIHQA----DNMLEKLLQTRK------------PPLEIL 157

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             + R   + G   ++  + I +D     G ++EA  +  +  S    PT    + L+  
Sbjct: 158 DSLVRCYREFG-GSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRD 216

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
               N +      +  M +  I+ DV  Y  +I A CK         VL +M  K   PN
Sbjct: 217 LLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPN 275

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             T N  + GL   G  DEA  V + M+ K    D  TYT+++  FC+    ++A  +++
Sbjct: 276 LFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFE 335

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M      P+  T++ LI+G   +G + ++  + ++MI +G++ +  T+  +   + K G
Sbjct: 336 SMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAG 395

Query: 459 R 459
            
Sbjct: 396 E 396



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 18/250 (7%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF-----------------IYSVLVHT 279
           +Y I+   LC +G + +A  +++ +  T   P                    ++ + +  
Sbjct: 122 SYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDK 181

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
           + V   + +A   F+     G    +   N L+    KAN     ++V   M    + P+
Sbjct: 182 FRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPD 241

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
             T   ++      G+  +   V   M K C+ +  TY   I   CQ G +++A +V K 
Sbjct: 242 VYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKL 301

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           M  K   P  HT+++L++G C +    ++ ++ E M   G+ P+  T+  L    IKEG 
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 460 -EDVLKFLQE 468
            E+ L+   E
Sbjct: 362 IEEALRIKDE 371


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 184/369 (49%), Gaps = 7/369 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
           E +V AY   I SL    +      L+  M+ +    NV+T+  ++   +R  K E A+ 
Sbjct: 304 EPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIG 363

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
            ++ M   G+      ++ L++ L        A  IF+ M     +P+++TY+++++G+ 
Sbjct: 364 VYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFC 423

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               + +A  IF +M+  G +P+++TY I++ +  K G ++ A+ +++ M     +  ++
Sbjct: 424 SIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTW 483

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+  +    ++E A   F EM ++GI  +V  YNA+I  +    K  +   +   M
Sbjct: 484 TYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKM 543

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
              G  P+S T N++++G        EA     +M+K     +  TYT  I   C+ G  
Sbjct: 544 VESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRT 603

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             AFK++  MK + + P++ T+S LI+GLC +G   D+  LL+D    G  P+ +T+  L
Sbjct: 604 SLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTL 659

Query: 451 RKLLIKEGR 459
            + L  +GR
Sbjct: 660 VRGLCGKGR 668



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 171/346 (49%), Gaps = 5/346 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y ++I  L    +++    +   M +   L N ET+ +I++ +  +  +++A   F+ M
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNL 216
            K G + N+  +N ++    K   +  A  + + MK   +  D+ TY+ L+ G+ +   L
Sbjct: 439 LKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKL 498

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +F EMV+ G +P++VTY  +++      +VD+AL +   M  +   P+S  Y+++
Sbjct: 499 EHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMM 558

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +   NRI +A +   +M K G+L +V  Y + I   CK  +    +++  +M  +  
Sbjct: 559 ISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396
            PN  T + +++GL   G+ ++A R+       CE + DTYT +++  C  G   +A ++
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAERLLDDG---CEPNVDTYTTLVRGLCGKGRCYEADQL 675

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            + MK K   PS   +  L+ G C    V  +  + + M+  G +P
Sbjct: 676 VESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQP 721



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 158/370 (42%), Gaps = 43/370 (11%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N+ TF  +++      KV+EA      +  YG   +   +  L+   CK+ N+  A E+F
Sbjct: 201 NLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMF 260

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M KD   P+S TYS L+ G   +  L  A ++  EM+D G  P +  Y I +  LC A
Sbjct: 261 DRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDA 320

Query: 249 GRVDEALGIVKSMDSTVCR-----------------------------------PTSFIY 273
           GR  EA+ ++  M    C                                    PT+  Y
Sbjct: 321 GRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTY 380

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L++   VE R E A+  F  M  +  L +   YN +I  FC     +    +   M  
Sbjct: 381 SALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLK 440

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM----IKLCEADADTYTMMIKMFCQGGE 389
            G +PN  T NII++    +G  + A R+   M    +KL   D  TY  +I  F +GG+
Sbjct: 441 AGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKL---DTWTYANLISGFSRGGK 497

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           LE AF ++  M      P++ T++ +ING      V D+  L   M+E G  PS  T+  
Sbjct: 498 LEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNM 557

Query: 450 LRKLLIKEGR 459
           +     K  R
Sbjct: 558 MISGFSKTNR 567



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 190/424 (44%), Gaps = 24/424 (5%)

Query: 41  IMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY 100
           I+LSSP     + L     ++ P  V ++L+   N  ++   FF W  +   ++H +  +
Sbjct: 56  IILSSPTWERSSELSHLIPKLKPHHVVNLLDTHNNTESV-LRFFHWVSRTHFFKHDMSCF 114

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
            SM+  L + R       L       R+L +++     R    V++V + +   N    +
Sbjct: 115 VSMLNRLVRDR-------LFVPADNVRILMIKS----CRNEGEVKRVIQVLSEINTTYDF 163

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRA 219
           G T  L +F+ LL  L K       ++++  M +  I P+  T++ +++       +  A
Sbjct: 164 GYT--LYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEA 221

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
             I   +   G  PD  TY  ++   CK G +D A  +   M    C P S  YS L++ 
Sbjct: 222 ELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALING 281

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
              E R+E+A+D   EM   GI   V  Y   I + C A +     ++L  M  +G  PN
Sbjct: 282 LCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPN 341

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-----ADTYTMMIKMFCQGGELEKAF 394
            +T   +++GL   G+ + A  V+ +M+    AD     A TY+ +I      G  E A 
Sbjct: 342 VQTYTALISGLSRDGKFEVAIGVYHKML----ADGLVPTAVTYSALINQLYVEGRFETAL 397

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++++M     +P+  T++V+I G C  G +  +  + + M++ G  P+  T+  +  + 
Sbjct: 398 TIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIY 457

Query: 455 IKEG 458
            K+G
Sbjct: 458 FKQG 461



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 175/394 (44%), Gaps = 5/394 (1%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCII 137
           LAF  F    K     +SV  Y ++I  L    + +   D++  M  K +   V  + I 
Sbjct: 255 LAFEMFDRMVKDGCDPNSV-TYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIP 313

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRF 196
           +       +  EAV     M+K G   N+  +  L+S L +      A  ++  M  D  
Sbjct: 314 IVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGL 373

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +P + TYS L+     +     A  IF  M+     P+  TY +++   C  G + +A  
Sbjct: 374 VPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATA 433

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           I   M      P    Y++++H Y  +  + +A+     M+ NG+  D   Y  LI  F 
Sbjct: 434 IFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFS 493

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DAD 375
           +  K ++ + +  +M   G++PN  T N I+NG +   + D+A  +F +M++      + 
Sbjct: 494 RGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSG 553

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY MMI  F +   + +A      M  +  +P++ T++  I+GLC  G  S +  +  +M
Sbjct: 554 TYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEM 613

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            ++   P+  T+  L   L +EG+ ED  + L +
Sbjct: 614 KKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD 647



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 146/316 (46%), Gaps = 13/316 (4%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIE---SLAKIRQ 112
           +G+++      +++  F   G L   F  + E  +     +V  Y+++I    ++AK+  
Sbjct: 476 NGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDD 535

Query: 113 -YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
              + W +V    +  + +  T+ +++  +++  ++ EA      M K G+  N+  +  
Sbjct: 536 ALALFWKMV---ESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTS 592

Query: 172 LLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
            +  LCK+     A +IF  MK R + P+  TYS L++G  ++     A      ++D G
Sbjct: 593 FIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAER----LLDDG 648

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C P++ TY  +V  LC  GR  EA  +V+SM     +P+  IY  L+        +E A+
Sbjct: 649 CEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESAL 708

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F  M   G    ++ Y ALI A CKAN  +    + + M  K    +     ++L+GL
Sbjct: 709 KIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGL 768

Query: 351 IGRGETDEAYRVFRRM 366
           +  GETD +  +   M
Sbjct: 769 LKEGETDLSLELLHVM 784



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 94/181 (51%), Gaps = 1/181 (0%)

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           D ++EM  +GI  ++  +NA+I   C   K +    ++  +   G  P++ T   ++ G 
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGH 247

Query: 351 IGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G  D A+ +F RM+K  C+ ++ TY+ +I   C  G LE+A  + + M  K   P++
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
           H +++ I  LCD G   ++  LL  M ++G  P+ +T+  L   L ++G+ +V   +  K
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367

Query: 470 M 470
           M
Sbjct: 368 M 368


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 211/465 (45%), Gaps = 28/465 (6%)

Query: 30  EALDAAKSISKIMLSSPKVVLDTALDQSGIR--VSPEIVEDVLEKFRNAG--TLAFCFFK 85
           EAL A    + ++  + K +L   +D   ++  ++ +++ + L  F   G  +L++ FF 
Sbjct: 10  EALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISE-LSLFSGYGGPSLSWSFFI 68

Query: 86  WAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV-------------- 131
           W +   + +HS+++   MI  L K + ++    L++ +  + +L+               
Sbjct: 69  WTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSED 128

Query: 132 -----ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
                  F  +M  YA+   + +++  F  ++  G+  +L A   LL++L K +      
Sbjct: 129 PEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVW 188

Query: 187 EIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           +IF  M K   + +   Y++L+    K  +  +A ++  EM + G  PDI TY  ++ V 
Sbjct: 189 KIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVY 248

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK     EAL +   M+ +   P    Y+  +H +  E R+ +A   F E+ K+ + A+ 
Sbjct: 249 CKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI-KDDVTANH 307

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
             Y  LI  +C+ N      R+ + M S+G +P   T N IL  L   G   EA R+   
Sbjct: 308 VTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTE 367

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M  K  E D  T   +I  +C+  ++  A KV K M        M+++  LI+G C    
Sbjct: 368 MSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLE 427

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           + ++   L  MIEKG  P   T+  L      + ++D + K L+E
Sbjct: 428 LENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEE 472



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 177/377 (46%), Gaps = 12/377 (3%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+ ++ + +K    +    L++ M  K +  ++ T+  ++  Y +     EA+   
Sbjct: 202 NIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQ 261

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
           + M++ GV  N+  +N  +    +   +R+A  +F  +KD    +  TY+ L++G+ +  
Sbjct: 262 DRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMN 321

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A  +   M   G +P +VTY  ++  LC+ GR+ EA  ++  M      P +   +
Sbjct: 322 DIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCN 381

Query: 275 VLVHTYGVENRIED---AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            L++ Y    +IED   AV    +M ++G+  D+  Y ALI  FCK  + +N    L  M
Sbjct: 382 TLINAYC---KIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSM 438

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGE 389
             KG +P   T + +++G   + + DE  ++     K  LC AD   Y  +I+  C+  +
Sbjct: 439 IEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLC-ADVALYRGLIRRICKLEQ 497

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           ++ A  +++ M+ K  +     F+ +       G V+++  L + M  + +  + + +  
Sbjct: 498 VDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKS 557

Query: 450 LRKLLIKEGREDVLKFL 466
           +       G  DVL+F 
Sbjct: 558 ISASY--AGDNDVLRFF 572


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 168/346 (48%), Gaps = 3/346 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ TF I++    R  K ++A      M+ YGV  N+  +N +++  C       A +IF
Sbjct: 216 SIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIF 275

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MKD+ + PD  TY+  +    K+  +  A  +  +++++G  P+ VTY  ++D  C  
Sbjct: 276 KTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNK 335

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +D+A      M +     + F Y++L+H   +E RIE+A D   EM + G+  DV  Y
Sbjct: 336 GDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTY 395

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N  I  +C+    K    +  +M  K + P   T   +++    R    EA   F++ IK
Sbjct: 396 NIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIK 455

Query: 369 L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D   +  +I   C  G +++AF++ K M   + +P   TF+ L+ G C +  V +
Sbjct: 456 EGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEE 515

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
           +  LL++M E+GI+P   ++  L     K G  +D L+   E ++L
Sbjct: 516 AKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSL 561



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 174/355 (49%), Gaps = 3/355 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y+++I       +++    +   M+ K +  +  T+   + +  + +++EEA    
Sbjct: 251 NVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVL 310

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKD 213
             + + G+  N   +N L+   C   ++ KA    D M +R I  S  TY++L+     +
Sbjct: 311 CKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLE 370

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A ++ +EM + G  PD+VTY I ++  C+ G   +AL +   M     RPT   Y
Sbjct: 371 KRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETY 430

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  +G  NR+ +A + F +  K G+L D+ M+NALI   C        +++LK+M++
Sbjct: 431 TSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDN 490

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
             V P+  T N ++ G     + +EA ++   M  +  + D  +Y  +I  + + G+++ 
Sbjct: 491 AKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKD 550

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           A +V+  M    F P++ T++ LI G    G    +  LL +M  KGI P   T+
Sbjct: 551 ALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 153/310 (49%), Gaps = 5/310 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           F+ LLSA C+ +   +A E  + MK+   IP ++T + LL    K   +  A  ++ EMV
Sbjct: 150 FDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMV 209

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
                  IVT+ IM+++LC+ G+  +A   +  M+    +P    Y+ +++ Y +  + E
Sbjct: 210 KMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFE 269

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
            A   F  M+   +  D   YN+ I   CK  + +    VL  +   G+ PN+ T N ++
Sbjct: 270 AASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALI 329

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +G   +G+ D+A+     M+ +   A   TY ++I        +E+A  + K M+ K   
Sbjct: 330 DGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVE 389

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           P + T+++ ING C  G    +  L ++M+EK IRP+ ET+  L  +    G+ + +   
Sbjct: 390 PDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF---GKRNRMSEA 446

Query: 467 QEKMNLLVKE 476
           +EK    +KE
Sbjct: 447 EEKFKKSIKE 456



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295
           + + +++   C+  + DEAL  +  M      P +   + L+      N+I+ A   + E
Sbjct: 148 LVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEE 207

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           M K  I + +  +N +I   C+  K+K     +  M   GV PN  T N ++NG   RG+
Sbjct: 208 MVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGK 267

Query: 356 TDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
            + A ++F+ M  K  + D  TY   I   C+   +E+A  V   +     +P+  T++ 
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQEK 469
           LI+G C+KG +  +    ++M+ +GI  S  T+  L   L  E R    ED++K ++EK
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 194/402 (48%), Gaps = 23/402 (5%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+N + +V AY+++I+SL K RQ    ++L + M TK +  ++ T+  ++     + + +
Sbjct: 194 QKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWK 253

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
                 N M    +  ++ +FN ++ ALCK   V +A ++ D M  R + P+  TY+ L+
Sbjct: 254 HVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALM 313

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG----------- 256
           +G      +  A ++F  MV  GC P++++Y  +++  CK  R+D+A+            
Sbjct: 314 DGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCY 373

Query: 257 -----IVKSMDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
                 VK  D+ VC+   P    Y+ L++ Y    RI+ A+  F EM +  ++ D   Y
Sbjct: 374 LNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 433

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           + LI   C   + ++   +  +M +    PN  T  I+L+ L       EA  + + +  
Sbjct: 434 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 493

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              + D     + I   C+ GELE A  ++  +  K   P + T+S++INGLC +G++ +
Sbjct: 494 SNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDE 553

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
           +  L  +M E G   +G  +  + +  ++       ++ LQE
Sbjct: 554 ASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQE 595



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 142/266 (53%), Gaps = 2/266 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M  +G+  N+   + L+++ C    V  A  +    +K    PD+ T++ L+ G   +  
Sbjct: 87  MDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGK 146

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +F +M+  G  PD+VTYG +++ LCK G    A+ ++ SM    C+P  F Y+ 
Sbjct: 147 IGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNT 206

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++ +   + ++ +A + F EM   GI  D+  YN+LI A C   ++K+V  +L +M    
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + P+  + N +++ L   G+  EA+ V  +MI+   E +  TYT ++   C   E+++A 
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLC 420
           KV+  M  K  +P++ +++ LING C
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYC 352



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 207/483 (42%), Gaps = 40/483 (8%)

Query: 5   YHSRN---KMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSG 58
           +HS++     I G IS   R    +P    +D  K   SI+K+   S  + L   +D  G
Sbjct: 32  FHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG 91

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQ 114
           I  +   +  ++  F +   + F F   A+  +  ++     + ++I  +    KI +  
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEAL 151

Query: 115 IMWD--LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
            ++D  +    R     +V T+  ++    +V     A+     M +     N+ A+N +
Sbjct: 152 HLFDKMIGEGFRP----DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTI 207

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           + +LCK + V +A  +F  M  + I PD  TY+ L+              +  EMVD+  
Sbjct: 208 IDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKI 267

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD+V++  +VD LCK G+V EA  +V  M      P    Y+ L+  + + + +++AV 
Sbjct: 268 MPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVK 327

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F  M   G + +V  YN LI  +CK  +          M+      N            
Sbjct: 328 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLN------------ 375

Query: 352 GRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                DEA +VF  M+ K C  +  +Y  +I  +C+   ++KA  ++  M  +  IP   
Sbjct: 376 ----MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTV 431

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T+S LI+GLC    + D+  L  +M+     P+  T+  L   L K       ++L E M
Sbjct: 432 TYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKN------RYLAEAM 485

Query: 471 NLL 473
            LL
Sbjct: 486 ALL 488



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 153/328 (46%), Gaps = 23/328 (7%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVE 148
           Q+  E +V  Y ++++    + +      + + M  K  M NV ++  ++  Y ++Q+++
Sbjct: 299 QRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRID 358

Query: 149 -------------------EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
                              EAV  F+ M   G   N+ ++N L++  CK + + KA  +F
Sbjct: 359 KAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 418

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M +   IPD+ TYS L+ G      L  A  +F EMV     P++VTY I++D LCK 
Sbjct: 419 GEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKN 478

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             + EA+ ++K+++ +   P   + ++ +        +E A D F  +   G+  DV  Y
Sbjct: 479 RYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTY 538

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + +I   C+        ++ ++M+  G   N    N I  G +   ET  A ++ + M+ 
Sbjct: 539 SIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVA 598

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFK 395
           +   ADA T T+ +KM    G L+++ K
Sbjct: 599 RGFSADASTMTLFVKMLSDDG-LDQSLK 625



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M NV ++  ++  Y ++Q++++A+Y F  M +  +  +   ++ L+  LC  + ++ A  
Sbjct: 392 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 451

Query: 188 IFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +F  M     IP+  TY ILL+   K+  L  A  + + +  +  +PDI    I +D +C
Sbjct: 452 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 511

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           +AG ++ A  +  ++ S   +P  + YS++++       +++A   F EM++NG   +  
Sbjct: 512 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGC 571

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +YN +   F + N+     ++L++M ++G + ++ T  + +  L   G      ++ R  
Sbjct: 572 IYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRNG 631

Query: 367 IK 368
            K
Sbjct: 632 CK 633


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 167/332 (50%), Gaps = 4/332 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ T   ++  + +  + +EAV   + M  +G   N+  +N +++ LCK++++  A E+F
Sbjct: 148 SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 207

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            CM+ + I  D+ TY+ L+ G         A  + R+MV    +P+++ +  ++D   K 
Sbjct: 208 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 267

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G + EA  + K M      P  F Y+ L++ + +   + DA   F  M   G   DV  Y
Sbjct: 268 GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTY 327

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI  FCK+ + ++  ++  +M  +G+  ++ T N +++G    G+ + A +VF RM+ 
Sbjct: 328 NTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVD 387

Query: 369 LCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            C    D  TY +++   C  G++EKA  + + ++       + T++++I GLC    + 
Sbjct: 388 -CGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLK 446

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           ++  L   +  KG++P    +  +   L ++G
Sbjct: 447 EAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 167/393 (42%), Gaps = 8/393 (2%)

Query: 69  VLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
           +LE+  N  T     F  A    +Y   +R        L  I+           ++++ +
Sbjct: 23  LLERGNNPETSLSRSFSGASHHHHYRERLR------NELHCIKFDDAFSLFCEMLQSRPI 76

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
            ++  F  ++   A++ K +  +Y ++ M+  G++ +L +F  L+   C+   +  A  +
Sbjct: 77  PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136

Query: 189 FD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
               MK  F P   T   LL G+ +      A  +   M   G  P++V Y  +++ LCK
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 196

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
              ++ AL +   M+    R  +  Y+ L+       R  DA     +M K  I  +V  
Sbjct: 197 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 256

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           + ALI  F K         + K+M  + V PN  T N ++NG    G   +A  +F  M+
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K C  D  TY  +I  FC+   +E   K++  M  +  +    T++ LI+G C  G ++
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 376

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +  +   M++ G+ P   T+  L   L   G+
Sbjct: 377 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 149/323 (46%), Gaps = 52/323 (16%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEK--------QQNYEHSVRAYHSMIE 105
           +++ GIR        ++    N+G       +W +         ++  + +V  + ++I+
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSG-------RWTDAARLLRDMVKRKIDPNVIFFTALID 262

Query: 106 SLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164
           +  K        +L   M R   + NV T+  ++  +     + +A Y F++M   G   
Sbjct: 263 TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP 322

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF 223
           ++  +N L++  CKSK V    ++F  M  +  + D+ TY+ L+ G+ +   L  A+++F
Sbjct: 323 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
             MVD G +PDIVTY I++D LC  G++++AL +V+                        
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVE------------------------ 418

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
                      +++K+ +  D+  YN +I   C+ +K K  + + + +  KGV P++   
Sbjct: 419 -----------DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 467

Query: 344 NIILNGLIGRGETDEAYRVFRRM 366
             +++GL  +G   EA ++ RRM
Sbjct: 468 ITMISGLCRKGLQREADKLCRRM 490



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 2/179 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I    K ++ +    L   M  + ++ +  T+  ++  Y +  K+  A   FN
Sbjct: 324 VVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 383

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
            M   GV+ ++  +N LL  LC +  + KA  +  D  K     D  TY+I+++G  +  
Sbjct: 384 RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 443

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            L  A  +FR +   G  PD + Y  M+  LC+ G   EA  + + M      P+  IY
Sbjct: 444 KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 188/378 (49%), Gaps = 3/378 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++  Y+ ++  L +  +      L++ M +  M  +  T+ I+     R  +    +  F
Sbjct: 263 NIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLF 322

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
               K GV       + LL+ LCK   V KA+++ + +     +P +  Y+ L+ G+ + 
Sbjct: 323 AESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A  IF +M      PD +TY  +++ LCK   V +A  +V  M+ +   P+   +
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 442

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+  YG   ++E       +M++ GI +DV  + +++ AFCK  K      +L DM  
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIY 502

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           K VAPN++  N I++  I  G+T++A+ +  +M      A   TY +++K  C+  ++++
Sbjct: 503 KDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDE 562

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   ++ +   P + +++ +I+  C+KG    +  LL++M + GIRP+  T+  L  
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVS 622

Query: 453 LLIKEGREDVLKFLQEKM 470
            L   GR   ++ L ++M
Sbjct: 623 ALASAGRVHDMECLYQQM 640



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 172/373 (46%), Gaps = 4/373 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y++MI+   K    +  + L + M       N+ T+ +++    R  +++E     + M 
Sbjct: 232 YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMA 291

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            + +  +   ++ L   L ++   R    +F + +K   +  + T SILL G  KD  + 
Sbjct: 292 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 351

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A ++   +V TG  P  V Y  +++  C+   +  A  I + M S   RP    Y+ L+
Sbjct: 352 KAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALI 411

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
           +       +  A D  +EMEK+G+   V  +N LI A+  A + +  + VL DM  KG+ 
Sbjct: 412 NGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIK 471

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKV 396
            +  +   ++      G+  EA  +   MI K    +A  Y  +I  + + G+ E+AF +
Sbjct: 472 SDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLL 531

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
            + MK      S+ T+++L+ GLC    + ++  L+  +  +G+RP   ++  +      
Sbjct: 532 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 591

Query: 457 EGRED-VLKFLQE 468
           +G  D  L+ LQE
Sbjct: 592 KGDTDKALELLQE 604



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 147/340 (43%), Gaps = 37/340 (10%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           ++N +++ L +S     A ++FD M D   +P+  TY+ +++G  K  +L     +  +M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQM 255

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +  G  P+IVTY +++  LC+AGR+DE   ++  M S    P  F YS+L          
Sbjct: 256 LHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES 315

Query: 287 EDAVDTFLEMEKNGIL-----------------------------------ADVAMYNAL 311
              +  F E  K G++                                       +YN L
Sbjct: 316 RTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTL 375

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  +C+    +  + + + M S+ + P+  T N ++NGL       +A  +   M K   
Sbjct: 376 INGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV 435

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           +   +T+  +I  +   G+LEK F V   M+ K     + +F  ++   C  G + ++  
Sbjct: 436 DPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVA 495

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +L+DMI K + P+ + +  +    I+ G  +    L EKM
Sbjct: 496 ILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKM 535



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 1/254 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ +Y++++ G  +      A ++F EMVD G  P+ +TY  M+D   K G ++    +
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 251

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M     +P    Y+VL+       R+++      EM  + +  D   Y+ L     +
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT- 376
             + + +  +  +   KGV   + TC+I+LNGL   G+  +A +V   ++          
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I  +CQ  +L  AF +++ MK +   P   T++ LINGLC   +V+ +  L+ +M 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 437 EKGIRPSGETFGKL 450
           + G+ PS ETF  L
Sbjct: 432 KSGVDPSVETFNTL 445



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           AFC F+  + +      +  Y+++I  L K+       DLV  M    +  +VETF  ++
Sbjct: 388 AFCIFEQMKSRHIRPDHI-TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRF 196
             Y    ++E+     + MQ+ G+  ++ +F  ++ A CK+  + +A  I D M  KD  
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD-V 505

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+++ Y+ +++ + +  +  +A  +  +M ++G +  IVTY +++  LC++ ++DEA  
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA-- 563

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
                          IY+                     +   G+  DV  YN +I A C
Sbjct: 564 ------------EELIYT---------------------LRNQGLRPDVVSYNTIISACC 590

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
                     +L++MN  G+ P  RT + +++ L   G   +   ++++M+ K  E  + 
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSS 650

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            Y +M+  + +     K   + K M  K
Sbjct: 651 IYGIMVDAYVRCENDSKVASLKKEMSEK 678



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQ 112
           +++SG+  S E    +++ +  AG L  CF   ++ QQ   +  V ++ S++++  K  +
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 489

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                 +++ M  K +  N + +  I+  Y      E+A      M+  GV+ ++  +N 
Sbjct: 490 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNL 549

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LL  LC+S  + +A+E+   ++++ + PD  +Y+ ++       +  +A E+ +EM   G
Sbjct: 550 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
             P + TY  +V  L  AGRV +   + + M      P+S IY ++V  Y
Sbjct: 610 IRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 3/172 (1%)

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           L  ++  N L+ +     +  +V      + + G  P++   N ++   +  G+ D A  
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 362 VFRRMIKLCEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
           + RRM +   A   DA +Y ++I    + G+   A KV+  M     +P+  T++ +I+G
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
               G +     L + M+  G +P+  T+  L   L + GR D  + L ++M
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM 290


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 174/363 (47%), Gaps = 5/363 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVM 157
           Y+++I       + Q   +++  MR +  +  +  T+  ++  + ++ ++E+AV  F+ M
Sbjct: 150 YNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEM 209

Query: 158 QKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPN 215
              G V  +   +N L+   C    +  A +  + M  R I  +  TY++L+     D  
Sbjct: 210 LTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDAR 269

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A  +  EM   G +PD+ TY I+++  CK G   +AL + + M     R T+  Y+ 
Sbjct: 270 ASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTS 329

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++ +  + ++++    F    K GI  DV MYNALI + C     +  Y ++ +M  K 
Sbjct: 330 LIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKR 389

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + P+  T N ++ G    G  DEA  +   M K   + D  +Y  +I  +   G+++ A 
Sbjct: 390 IPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDAL 449

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +V   M  K F P++ T++ LI GLC      D+  L+++M+ KGI P   T+  L + L
Sbjct: 450 RVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509

Query: 455 IKE 457
             E
Sbjct: 510 TTE 512



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 191/452 (42%), Gaps = 47/452 (10%)

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           +  SP +   +L     A   A     +A+ K  +    V + H ++ SL     + +  
Sbjct: 46  LSASPSLPHLLLTASAAARPHATSLRLYAQLKSLSVPIPVASLHPLLSSLPSAPAFALFA 105

Query: 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           D+    R +  L   TF I++R      K   A+     M +     N   +N +++  C
Sbjct: 106 DIY---RLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFC 158

Query: 178 KSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPD 234
               V+ A E+   M++R    PD  TY+ L+ GW K   +  A ++F EM+  G   P 
Sbjct: 159 ARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPS 218

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
            V Y  ++   C  G++D AL   + M       T   Y++L+H   ++ R  DA     
Sbjct: 219 AVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLE 278

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           EM+KNG   DV  YN LI  +CK    K    V ++M+ KGV   + T   ++     +G
Sbjct: 279 EMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKG 338

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           +  E  R+F   +K     D   Y  +I   C GG++E+A+++   M+ KR  P   T++
Sbjct: 339 QVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYN 398

Query: 414 VLINGLC-----------------------------------DKGIVSDSCVLLEDMIEK 438
            L+ G C                                    KG + D+  + ++M++K
Sbjct: 399 TLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDK 458

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           G  P+  T+  L + L K  + D  + L ++M
Sbjct: 459 GFNPTLMTYNALIQGLCKIRQGDDAENLMKEM 490



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 1/227 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++  Y +    ++A+  F  M + GV      +  L+    +   V++   +F
Sbjct: 288 DVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLF 347

Query: 190 D-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           +  +K    PD   Y+ L+       ++ RA EI  EM      PD +TY  ++   C  
Sbjct: 348 NVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLL 407

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DEA  ++  M     +P    Y+ L+  Y ++  I+DA+    EM   G    +  Y
Sbjct: 408 GRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTY 467

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           NALI   CK  +  +   ++K+M +KG+ P+  T   ++ GL    E
Sbjct: 468 NALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 192/398 (48%), Gaps = 21/398 (5%)

Query: 86  W-AEKQQN--YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRK 140
           W  EK +N  Y  + R Y +++  L KI       + +  M  KR L  NV  +  I+  
Sbjct: 166 WLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKM-VKRNLGPNVVVYNAILDG 224

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-KNVRKAQEIFDCM--KDRFI 197
             +   V EA+   + M    V  N+  +N L+  LC      R+   +F+ M  +   +
Sbjct: 225 LCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIV 284

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD +T+SIL++G+ K+  L RA  +   MV  G  P++VTY  ++   C   +++EA+ +
Sbjct: 285 PDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRV 344

Query: 258 VKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
              M  +   C P+   ++ L+H +     ++ A+    EM   G+  DV  + +LIG F
Sbjct: 345 FGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGF 404

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           C+  K      +   M   G  PN +TC ++L+GL+      EA  +FR M+K   + D 
Sbjct: 405 CEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDI 464

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y +M+   C+ G+L  A K+   + +K      +T++++I GLC +G++ D+  LL  
Sbjct: 465 VIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRK 524

Query: 435 MIEKGIRPSGETF-----GKLRKLLIKEGREDVLKFLQ 467
           M E G  P+  ++     G LRK  I   R    K+LQ
Sbjct: 525 MKENGCPPNKCSYNVFVQGLLRKYDIARSR----KYLQ 558



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 148/327 (45%), Gaps = 7/327 (2%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ F ++    A+ Q    A+    ++   G  + ++   N  ++ LC  +       + 
Sbjct: 74  IQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVL 133

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M K    P   T + ++ G   + ++  A  +  +M + G + +  TYG +V+ LCK 
Sbjct: 134 GLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKI 193

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G    AL  +K M      P   +Y+ ++        + +A+    EM    +  +V  Y
Sbjct: 194 GDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTY 253

Query: 309 NALIGAFC-KANKFKNVYRVLKDMNS-KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           N LI   C +   ++    +  +M + KG+ P+ +T +I+++G    G    A  V   M
Sbjct: 254 NCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFM 313

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM--KLKRFIPSMHTFSVLINGLCDKG 423
           +++  E +  TY  +I  +C   ++E+A +V+  M  + +  +PS+ T + LI+G C   
Sbjct: 314 VRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVK 373

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKL 450
            V  +  LL +M+ KG+ P   T+  L
Sbjct: 374 EVDKAMSLLSEMVGKGLDPDVFTWTSL 400



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 139/283 (49%), Gaps = 17/283 (6%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML---------NVETFCIIMRKYARV 144
           E +V  Y+S+I        Y +   +  AMR   ++         +V T   ++  + +V
Sbjct: 319 EPNVVTYNSLIAG------YCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKV 372

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTY 203
           ++V++A+   + M   G+  ++  +  L+   C+ K    A+E+F  MK+   +P+ +T 
Sbjct: 373 KEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTC 432

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +++L+G  K      A  +FR M+ +G + DIV Y IM+D +CK G++++A  ++  +  
Sbjct: 433 AVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLV 492

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
              +  S+ Y++++     E  ++DA +   +M++NG   +   YN  +    +      
Sbjct: 493 KGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIAR 552

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
             + L+ M  KG   ++ T  +++   +   E D++++ F ++
Sbjct: 553 SRKYLQIMKDKGFPVDATTAELLIR-FLSANEEDKSFKEFPQI 594



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 2/191 (1%)

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIIL 347
           AVD F  M        +  +N L G   K+  +     ++K ++S G  + +  T NI +
Sbjct: 58  AVDFFHRMLTLTPFPCIQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAI 117

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           N L    +T   + V   M K+  E    T   ++   C  G++  A  + + M+   + 
Sbjct: 118 NCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYH 177

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
            +  T+  L+NGLC  G  S +   L+ M+++ + P+   +  +   L K G       L
Sbjct: 178 CNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGL 237

Query: 467 QEKMNLLVKEP 477
             +M ++  EP
Sbjct: 238 LHEMGVVNVEP 248


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 185/377 (49%), Gaps = 3/377 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I  L K  +Y     +++ M    M  +  T+ I++ +  R   + +A   F+
Sbjct: 428 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 487

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   GV  +L +F+ L+  L K+  + +A + F  MK+    PD+  Y+IL+ G+ ++ 
Sbjct: 488 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 547

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A ++  EM++ GC  D+VTY  +++ LCK   + EA  +   M      P  + ++
Sbjct: 548 VMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 607

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ Y  +  +  AV  F  M +  +  DV  YN LI  FCK ++ + V  +  DM S+
Sbjct: 608 TLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 667

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
            + PN  +  I++NG    G   EA+R++  M+ K  EA   T   ++K +C+ G   KA
Sbjct: 668 RIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKA 727

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +    M LK  +P   T++ LING   +  +  +  L+  M   G+ P   T+  +   
Sbjct: 728 DEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 787

Query: 454 LIKEGREDVLKFLQEKM 470
             ++GR    + +  KM
Sbjct: 788 FSRQGRMQEAELIMLKM 804



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 55/414 (13%)

Query: 92  NYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRMLNVET-------------- 133
           N++HS++++ +MI  L + R+      ++  +V      R+  VE+              
Sbjct: 231 NFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV 290

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQ----------------------------------- 158
           F +++R Y + +K+ E    F V++                                   
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           + GV  N+   N +++ALCK++ +   +     M+++ + PD  TY+ L+  + +   L 
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+   M   G  P + TY  +++ LCK G+   A G++  M      P +  Y++L+
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 470

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 + + DA   F EM   G++ D+  ++ALIG   K        +  +DM + G+A
Sbjct: 471 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 530

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P++    I++ G    G   EA +V   M++  C  D  TY  ++   C+   L +A ++
Sbjct: 531 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADEL 590

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +  M  +   P  +TF+ LING    G ++ +  L E MI++ ++P   T+  L
Sbjct: 591 FTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 644



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 153/311 (49%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  + R   + EA+   + M + G   ++  +N +L+ LCK K + +A E+F  M 
Sbjct: 536 YTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMT 595

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R + PD  T++ L+ G+ KD N+ +A  +F  M+     PD+VTY  ++D  CK   ++
Sbjct: 596 ERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME 655

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +   +   M S    P    Y +L++ Y     + +A   + EM + G  A +   N ++
Sbjct: 656 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 715

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +C+A         L +M  KG+ P+  T N ++NG I     D A+ +  +M      
Sbjct: 716 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLL 775

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY +++  F + G +++A  +   M  +   P   T++ LING   +  + ++  +
Sbjct: 776 PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 835

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 836 HDEMLQRGFVP 846



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 8/284 (2%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+V T+  I+    + + + EA   F  M + GV  +   F  L++   K  N+ KA  +
Sbjct: 566 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F+ M  R + PD  TY+ L++G+ K   + +  E++ +M+     P+ ++YGI+++  C 
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 685

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV--DTFLE-MEKNGILAD 304
            G V EA  +   M       T    + +V  Y    R  +AV  D FL  M   GI+ D
Sbjct: 686 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPD 742

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
              YN LI  F K       + ++  M + G+ P+  T N+ILNG   +G   EA  +  
Sbjct: 743 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 802

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           +MI +    D  TYT +I        L++AF+V   M  + F+P
Sbjct: 803 KMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 124/289 (42%), Gaps = 37/289 (12%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +Q     V  Y++++  L K +      +L   M  + +  +  TF  ++  Y +   + 
Sbjct: 561 EQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMN 620

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILL 207
           +AV  F +M +  +  ++  +N L+   CK   + K  E++ D +  R  P+  +Y IL+
Sbjct: 621 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 208 EGWGKDPNLPRAREIFREMVDTG-------CN---------------------------- 232
            G+     +  A  ++ EMV+ G       CN                            
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 740

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD +TY  +++   K   +D A  +V  M+++   P    Y+V+++ +  + R+++A   
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
            L+M + G+  D + Y +LI      N  K  +RV  +M  +G  P+ +
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDK 849



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 18/205 (8%)

Query: 273 YSVLVHTYGVENRIEDAVDTFLEM-EKNGIL----------------ADVAMYNALIGAF 315
           +S ++H      R+ DA    L M  K+G+                 ++  +++ L+  +
Sbjct: 239 FSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY 298

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
            +A K +      + + SKG+  +   CN +L GL+  G  D A+ +++ +++   + + 
Sbjct: 299 VQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNV 358

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            T  +MI   C+  ++E        M+ K   P + T++ LIN  C +G++ ++  L++ 
Sbjct: 359 YTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDS 418

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR 459
           M  KG++P   T+  +   L K G+
Sbjct: 419 MSGKGLKPCVFTYNAIINGLCKTGK 443


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 207/469 (44%), Gaps = 71/469 (15%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFR--------NAGTLAFCFFK-WAEKQQNYEHSV 97
            +VL+   DQ  +  +  ++ D L  F         NA     C  K W   Q+  E  V
Sbjct: 233 NLVLNAICDQGSVDEALHLLRD-LPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV 291

Query: 98  R--------AYHSMIESLAKI----RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           R         ++++I  L +     R ++++  +V    T    ++  +  I+    +  
Sbjct: 292 RMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP---DIRMYATIIDGICKEG 348

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYS 204
            +E A    N M  YG+  N+  +N LL  LC ++   + +E+   M D+  P D  T++
Sbjct: 349 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 408

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           IL++ + ++  + R  E+  +M++ GC PD++TY  +++  CK G +DEA+ ++KSM + 
Sbjct: 409 ILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 468

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C+P +  Y++++       R  DA D   +M + G   +   +N LI   CK    +  
Sbjct: 469 GCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 528

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---------------- 368
             +LK M   G +P+  + + +++GL   G+TDEA  +   M+                 
Sbjct: 529 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 588

Query: 369 --------------------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                                  +DA  Y  +I   C+ GE E+A +   YM     +P+
Sbjct: 589 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 648

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             T+++LI GL  +G V ++  +L ++  K         G LRK L+K 
Sbjct: 649 ESTYTILIRGLASEGFVKEAQEMLTELCSK---------GALRKHLMKH 688



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 179/398 (44%), Gaps = 38/398 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           YH ++E+  +   ++    ++  +  +   L+V    +++        V+EA++    + 
Sbjct: 197 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP 256

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
            +G   ++ ++N +L  LC +K     QE+ + M +    P+  T++ L+    ++    
Sbjct: 257 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 316

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           R  E+  +MV+ GC PDI  Y  ++D +CK G ++ A  I+  M S   +P    Y+ L+
Sbjct: 317 RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 376

Query: 278 H----------------------------TYGV------ENRIEDAVDTFLE-MEKNGIL 302
                                        T+ +      +N + D V   LE M ++G +
Sbjct: 377 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCM 436

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  Y  +I  FCK         +LK M + G  PN+ +  I+L GL       +A  +
Sbjct: 437 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDL 496

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             +MI+  C  +  T+  +I   C+ G +E+A ++ K M +    P + ++S +I+GL  
Sbjct: 497 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 556

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            G   ++  LL  M+ KG+ P+   +  +   L +EGR
Sbjct: 557 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGR 594



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 147/356 (41%), Gaps = 40/356 (11%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPD 199
           Y R  ++E A     +     V  N   +  ++ ALC    +  A  + D M  R   P 
Sbjct: 137 YCRAGQLESA---RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPI 193

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
              Y ++LE   +      A  +  ++   GC  D+    ++++ +C  G VDEAL +++
Sbjct: 194 PPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLR 253

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            + S  C P    Y+ ++    +  R     +   EM +     ++  +N LI   C+  
Sbjct: 254 DLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNG 313

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI------------ 367
            F+ V+ VL  M   G  P+ R    I++G+   G  + A+ +  RM             
Sbjct: 314 LFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYN 373

Query: 368 ------------------------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
                                   K C  D  T+ +++  FCQ G +++  ++ + M   
Sbjct: 374 TLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH 433

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +P + T++ +ING C +G++ ++ +LL+ M   G +P+  ++  + K L    R
Sbjct: 434 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAER 489



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 4/234 (1%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  MV   C+AG+++ A  +  ++      P ++ Y  +V       RI DA+    EM 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPVP---PNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G      MY+ ++ A C+   F++  RVL+D++++G A +   CN++LN +  +G  D
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 246

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA  + R +    CE D  +Y  ++K  C         ++ + M      P++ TF+ LI
Sbjct: 247 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + LC  G+      +L  M+E G  P    +  +   + KEG  +V   +  +M
Sbjct: 307 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 209/435 (48%), Gaps = 18/435 (4%)

Query: 49  VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY------------EHS 96
           + D+     G   +P +   +L++  +   +A  + K +   Q              +  
Sbjct: 29  IFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNSMPDQALDIFQRMHEIFGCQPG 88

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           +R+Y+S++ +L +  ++           T  +  N++T+ I+++   R ++ ++A    N
Sbjct: 89  IRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLN 148

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   G + ++ ++  L+++L K+  +  A ++FD M +R + PD   Y+IL++G+ K  
Sbjct: 149 WMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKG 208

Query: 215 NLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
           ++  A EI+  ++      P+I +Y +M++ LCK G+ DE+  I   M         + Y
Sbjct: 209 DILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTY 268

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S L+H       ++ A   + EM +NG+  DV +YN ++  + +A + +    + K M  
Sbjct: 269 STLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEK 328

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           +G      + NI++ GL    + DEA  ++  +  K C AD+ TY +++   C+ G L K
Sbjct: 329 EGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNK 387

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A  + +  +  R       +S +INGLC +G + +   +L+ M + G +P+      +  
Sbjct: 388 ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVIN 447

Query: 453 LLIKEGR-EDVLKFL 466
             ++  + ED L+F 
Sbjct: 448 GFVRASKLEDALRFF 462



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 182/357 (50%), Gaps = 2/357 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMR-TKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ +Y+ MI  L K  ++   +++ + M+  +R  ++ T+  ++        ++ A   +
Sbjct: 229 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVY 288

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
             M + GV+ ++  +N +L+   ++  + +  E++  M+        +Y+IL+ G  ++ 
Sbjct: 289 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 348

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A  I+  + +  C  D +TYG++V  LCK G +++AL I++  ++      +F YS
Sbjct: 349 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYS 408

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            +++    E R+++      +M K+G   +  + NA+I  F +A+K ++  R   +M SK
Sbjct: 409 SMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSK 468

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G  P   T N ++NGL       EAY + + M+ K  + +  TY++++   CQG +L+ A
Sbjct: 469 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMA 528

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             +W     K F P +   +++I+GLC  G V D+  L  +M ++   P+  T   L
Sbjct: 529 LNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTL 585



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 173/358 (48%), Gaps = 38/358 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V  +  ++  Y R  ++EE +  + VM+K G  + + ++N L+  L ++  V +A  I+
Sbjct: 299 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIW 357

Query: 190 DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + + ++    DS TY +L+ G  K+  L +A  I  E  +   + D   Y  M++ LC+ 
Sbjct: 358 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 417

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR+DE  G++  M    C+P  ++ + +++ +   +++EDA+  F  M   G    V  Y
Sbjct: 418 GRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 477

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---------------------C---- 343
           N LI    KA +F   Y ++K+M  KG  PN  T                     C    
Sbjct: 478 NTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 537

Query: 344 ----------NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
                     NII++GL   G+ ++A +++  M +  C  +  T+  +++ F +  + E+
Sbjct: 538 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFER 597

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A K+W ++      P + ++++ + GLC    +SD+   L D +++G+ P+  T+  L
Sbjct: 598 ASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 655



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 182/376 (48%), Gaps = 5/376 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           Q +   V +Y ++I SLAK         L + M  + +  +V  + I++  + +   +  
Sbjct: 153 QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILN 212

Query: 150 AVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILL 207
           A   +  +++   V  N+ ++N +++ LCK     ++ EI+  MK +    D  TYS L+
Sbjct: 213 ASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLI 272

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G     NL  A  +++EM + G +PD+V Y  M++   +AGR++E L + K M+   CR
Sbjct: 273 HGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR 332

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
            T   Y++L+       ++++A+  +  + +    AD   Y  L+   CK         +
Sbjct: 333 -TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSI 391

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
           L++  +     ++   + ++NGL   G  DE   V  +M K  C+ +      +I  F +
Sbjct: 392 LEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVR 451

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
             +LE A + +  M  K   P++ T++ LINGL      S++  L+++M++KG +P+  T
Sbjct: 452 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMIT 511

Query: 447 FGKLRKLLIKEGREDV 462
           +  L   L +  + D+
Sbjct: 512 YSLLMNGLCQGKKLDM 527



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 118/256 (46%), Gaps = 2/256 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFNVM 157
           AY SMI  L +  +   +  +++ M           C  ++  + R  K+E+A+  F  M
Sbjct: 406 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNM 465

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
              G    +  +N L++ L K++   +A  +  + ++  + P+  TYS+L+ G  +   L
Sbjct: 466 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKL 525

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  ++ + ++ G  PD+  + I++  LC +G+V++AL +   M    C P    ++ L
Sbjct: 526 DMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTL 585

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +      E A   +  + + G+  D+  YN  +   C  ++  +    L D   +GV
Sbjct: 586 MEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGV 645

Query: 337 APNSRTCNIILNGLIG 352
            P + T NI++ G + 
Sbjct: 646 LPTAITWNILVQGYLA 661



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 357 DEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSV 414
           D+A  +F+RM ++  C+    +Y  ++    +  + ++A   + Y +     P++ T+++
Sbjct: 70  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 129

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           LI   C K     +  LL  M  +G  P   ++G L   L K G   D LK   E
Sbjct: 130 LIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 184


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 179/369 (48%), Gaps = 40/369 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK--AQE 187
           N+ TF I +    R  K+ +A      M+ +G++ N+  +N L+   CK  +  K    E
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 188 IF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
            F  + + ++  P+  T++ L++G+ KD N+  A++ F EM   G  P+IVTY  +++ L
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGL 318

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN------ 299
           C  G+++EA+ +   M     +P    Y+ L++ +  +  +++A   F ++ K       
Sbjct: 319 CNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNV 378

Query: 300 -----------------------------GILADVAMYNALIGAFCKANKFKNVYRVLKD 330
                                        GIL +V+ YN LI   C+    +    +L +
Sbjct: 379 ITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNE 438

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M +KG+  +  T NI+++GL    ++  A ++   M  L  + +  TY  ++  +C  G+
Sbjct: 439 MENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGK 498

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
           L+ A  V   M+ +R  P++ T++VLI G C    +  +  LL +M+EKG+ P+  T+  
Sbjct: 499 LKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDI 558

Query: 450 LRKLLIKEG 458
           +R  ++++G
Sbjct: 559 VRLEMLEKG 567



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 196/433 (45%), Gaps = 27/433 (6%)

Query: 70  LEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK 126
           L++  NAG    L   FFKW++K+    + +     ++  LA  ++Y  +   +++    
Sbjct: 48  LDQLLNAGVDSELVLRFFKWSQKEYRLSYGLEPTSKVLHFLANSKRYSKVRSFLDSFVKN 107

Query: 127 RMLNVET----------------FCIIMRKYARVQKVEE--AVYTFNVMQKYGVTQNLAA 168
               V +                  I M   A V+ +E   A   F   + YG   +L +
Sbjct: 108 EKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTS 167

Query: 169 FNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            N LLSAL K   +   + ++ + +K R   +  T++I + G  +   L +A +   +M 
Sbjct: 168 CNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMK 227

Query: 228 DTGCNPDIVTYGIMVDVLCK---AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
             G +P++VTY  +VD  CK   AG++ +A   +K M +    P    ++ L+  +  + 
Sbjct: 228 AWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDE 287

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            +  A   F EM+K G+  ++  YN+LI   C   K +    +   M   G+ PN  T N
Sbjct: 288 NVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYN 347

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            ++NG   +    EA +VF  + K     +  T+  MI  +C+ G +E+ F +   M  +
Sbjct: 348 ALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDE 407

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-DV 462
             +P++ T++ LI GLC K  +  +  LL +M  KG++    T+  L   L K  +  + 
Sbjct: 408 GILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA 467

Query: 463 LKFLQEKMNLLVK 475
            K L E  NL +K
Sbjct: 468 EKLLNEMFNLGLK 480



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 149/300 (49%), Gaps = 2/300 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  TF  ++  + + + V  A   F  MQK G+  N+  +N L++ LC +  + +A +++
Sbjct: 272 NEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLW 331

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           D M    + P+  TY+ L+ G+ K   +  A ++F ++      P+++T+  M+D  CK 
Sbjct: 332 DKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKE 391

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++E   +  SM      P    Y+ L+     +  ++ A +   EME  G+  DV  Y
Sbjct: 392 GMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTY 451

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI   CK +K +N  ++L +M + G+ PN  T N +++G    G+   A  V  RM K
Sbjct: 452 NILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEK 511

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              + +  TY ++IK +C+  +LE A  +   M  K   P+  T+ ++   + +KG   D
Sbjct: 512 ERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKGFSPD 571



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 165/346 (47%), Gaps = 5/346 (1%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           ++    +  K+ +  Y +  M K  +  NL  FN  ++ LC++  + KA++  + MK   
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG 230

Query: 197 I-PDSKTYSILLEGW---GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           I P+  TY+ L++G+   G    + +A    +EM+     P+ VT+  ++D  CK   V 
Sbjct: 231 ISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVA 290

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A    + M     +P    Y+ L++      ++E+A+D + +M   G+  ++  YNALI
Sbjct: 291 AAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALI 350

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCE 371
             FCK    K   +V  D++ + + PN  T N +++     G  +E + +   M+ +   
Sbjct: 351 NGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGIL 410

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +  TY  +I   C+  +L+ A ++   M+ K     + T+++LI+GLC      ++  L
Sbjct: 411 PNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKL 470

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           L +M   G++P+  T+  L      EG+      ++ +M    K+P
Sbjct: 471 LNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQP 516



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 138/270 (51%), Gaps = 6/270 (2%)

Query: 89  KQQNYEHSVRAYHSMIESL---AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           ++Q  + ++  Y+S+I  L    K+ +   +WD +  +  K   N+ T+  ++  + + +
Sbjct: 300 QKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKP--NIVTYNALINGFCKKK 357

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
            ++EA   F+ + K  +  N+  FN ++ A CK   + +   +   M D   +P+  TY+
Sbjct: 358 MMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYN 417

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+ G  +  +L  A+E+  EM + G   D+VTY I++D LCK  +   A  ++  M + 
Sbjct: 418 CLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNL 477

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
             +P    Y+ L+  Y +E +++ A++    MEK     +V  YN LI  +CK NK +  
Sbjct: 478 GLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAA 537

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
             +L +M  KG+ PN  T +I+   ++ +G
Sbjct: 538 NGLLNEMLEKGLNPNRTTYDIVRLEMLEKG 567


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 172/340 (50%), Gaps = 2/340 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I+     R  +    +  F    K GV       + LL+ LCK   V KA+++ + +
Sbjct: 123 TYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML 182

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
                +P +  Y+ L+ G+ +  +L  A  IF +M      PD +TY  +++ LCK   V
Sbjct: 183 VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMV 242

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            +A  +V  M+ +   P+   ++ L+  YG   ++E       +M++ GI +DV  + ++
Sbjct: 243 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 302

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           + AFCK  K      +L DM  K VAPN++  N I++  I  G+T++A+ +  +M     
Sbjct: 303 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            A   TY +++K  C+  ++++A ++   ++ +   P + +++ +I+  C+KG    +  
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           LL++M + GIRP+  T+  L   L   GR   ++ L ++M
Sbjct: 423 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 172/374 (45%), Gaps = 4/374 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y++MI+   K    +  + L + M       N+ T+ +++    R  +++E     + M
Sbjct: 53  TYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM 112

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
             + +  +   ++ L   L ++   R    +F + +K   +  + T SILL G  KD  +
Sbjct: 113 ASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKV 172

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A ++   +V TG  P  V Y  +++  C+   +  A  I + M S   RP    Y+ L
Sbjct: 173 AKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 232

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++       +  A D  +EMEK+G+   V  +N LI A+  A + +  + VL DM  KG+
Sbjct: 233 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 292

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
             +  +   ++      G+  EA  +   MI K    +A  Y  +I  + + G+ E+AF 
Sbjct: 293 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFL 352

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           + + MK      S+ T+++L+ GLC    + ++  L+  +  +G+RP   ++  +     
Sbjct: 353 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 412

Query: 456 KEGRED-VLKFLQE 468
            +G  D  L+ LQE
Sbjct: 413 NKGDTDKALELLQE 426



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 147/340 (43%), Gaps = 37/340 (10%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           ++N +++ L +S     A ++FD M D   +P+  TY+ +++G  K  +L     +  +M
Sbjct: 18  SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQM 77

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +  G  P+IVTY +++  LC+AGR+DE   ++  M S    P  F YS+L          
Sbjct: 78  LHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES 137

Query: 287 EDAVDTFLEMEKNGIL-----------------------------------ADVAMYNAL 311
              +  F E  K G++                                       +YN L
Sbjct: 138 RTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTL 197

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I  +C+    +  + + + M S+ + P+  T N ++NGL       +A  +   M K   
Sbjct: 198 INGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV 257

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           +   +T+  +I  +   G+LEK F V   M+ K     + +F  ++   C  G + ++  
Sbjct: 258 DPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVA 317

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +L+DMI K + P+ + +  +    I+ G  +    L EKM
Sbjct: 318 ILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKM 357



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 1/254 (0%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD+ +Y++++ G  +      A ++F EMVD G  P+ +TY  M+D   K G ++    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M     +P    Y+VL+       R+++      EM  + +  D   Y+ L     +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT- 376
             + + +  +  +   KGV   + TC+I+LNGL   G+  +A +V   ++          
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  +I  +CQ  +L  AF +++ MK +   P   T++ LINGLC   +V+ +  L+ +M 
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 437 EKGIRPSGETFGKL 450
           + G+ PS ETF  L
Sbjct: 254 KSGVDPSVETFNTL 267



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 142/311 (45%), Gaps = 41/311 (13%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           AFC F+  + +      +  Y+++I  L K+       DLV  M    +  +VETF  ++
Sbjct: 210 AFCIFEQMKSRHIRPDHI-TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 268

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRF 196
             Y    ++E+     + MQ+ G+  ++ +F  ++ A CK+  + +A  I D M  KD  
Sbjct: 269 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD-V 327

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+++ Y+ +++ + +  +  +A  +  +M ++G +  IVTY +++  LC++ ++DEA  
Sbjct: 328 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 387

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++ ++ +   RP                                   DV  YN +I A C
Sbjct: 388 LIYTLRNQGLRP-----------------------------------DVVSYNTIISACC 412

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADAD 375
                     +L++MN  G+ P  RT + +++ L   G   +   ++++M+ K  E  + 
Sbjct: 413 NKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSS 472

Query: 376 TYTMMIKMFCQ 386
            Y +M+  + +
Sbjct: 473 IYGIMVDAYVR 483



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ-NYEHSVRAYHSMIESLAKIRQ 112
           +++SG+  S E    +++ +  AG L  CF   ++ QQ   +  V ++ S++++  K  +
Sbjct: 252 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 311

Query: 113 YQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                 +++ M  K +  N + +  I+  Y      E+A      M+  GV+ ++  +N 
Sbjct: 312 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNL 371

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           LL  LC+S  + +A+E+   ++++ + PD  +Y+ ++       +  +A E+ +EM   G
Sbjct: 372 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 431

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
             P + TY  +V  L  AGRV +   + + M      P+S IY ++V  Y
Sbjct: 432 IRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 481



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%)

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
           DA +Y ++I    + G+   A KV+  M     +P+  T++ +I+G    G +     L 
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + M+  G +P+  T+  L   L + GR D  + L ++M
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM 112


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 195/389 (50%), Gaps = 12/389 (3%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCIIMRKYARVQKV 147
           +  + +V +Y+ ++E L K+ ++    +LV  M ++      ++ T+  ++  Y +  KV
Sbjct: 39  RGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKV 98

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
           EE+      +   G+  +   +  ++++LCKS  + +A E+ + M +    P   T++ L
Sbjct: 99  EESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTL 158

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G  ++ NL  A  + + M  +G   D+VTY  ++D LCKAGR+ EA  +++ M ++ C
Sbjct: 159 ISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGC 218

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    YS  V+      ++ +A     +M  +    +V  YN ++   CK+ K      
Sbjct: 219 APDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALE 278

Query: 327 VLKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
           +++ M +S G   N    + +++GL   G T EA  V   M +  C  D  TY+ ++   
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGL 338

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR--- 441
           C+ G++E+A +  + M ++   P+  T+  L++GLC  G ++++  ++E+M   G     
Sbjct: 339 CKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDH 398

Query: 442 --PSGETFGKLRKLLIKEGR-EDVLKFLQ 467
             PS  T+  L   L K GR +D LKF Q
Sbjct: 399 CPPSVSTYNALIGGLCKAGRIDDALKFFQ 427



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 173/387 (44%), Gaps = 40/387 (10%)

Query: 124 RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           RT    N  TF  ++  +++  +  +       M   G+  N+ ++NGLL  LCK +   
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH 62

Query: 184 KAQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           +A+E+   M     R  PD  TYS LL G+ K   +  +RE+ +E++  G  PD + Y  
Sbjct: 63  EAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           ++  LCK+ R+ EAL +++ M    C PT   ++ L+     E  +E A      M  +G
Sbjct: 123 VMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASG 182

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA----------------------- 337
           + ADV  YN L+   CKA + +   ++L+ M + G A                       
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAH 242

Query: 338 ------------PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKM 383
                       PN  T N IL+GL   G+ D A  +  +M     C  +   Y+ ++  
Sbjct: 243 QVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDG 302

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            C+ G  ++A  V + M      P + T+S L+NGLC  G + ++   + +M  +G +P+
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKM 470
             T+  L   L   GR    + + E+M
Sbjct: 363 AVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 149/303 (49%), Gaps = 9/303 (2%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           ++++I    + +  ++   L+  M    +  +V T+  +M    +  +++EA      M+
Sbjct: 155 FNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK 214

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
             G   ++ A++  +  LCKS  V  A ++ + M+D    P+  TY+ +L+G  K   + 
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKID 274

Query: 218 RAREIFREMVDT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            A E+  +M  + GC  ++V Y  +VD LCK GR  EA  ++++M    CRP    YS L
Sbjct: 275 TALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSL 334

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG- 335
           V+      +IE+AV+   EM   G   +   Y +L+   C   +     R++++M+S G 
Sbjct: 335 VNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGG 394

Query: 336 ----VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGEL 390
                 P+  T N ++ GL   G  D+A + F+RM  + C+ D  +Y+ +++   + G  
Sbjct: 395 GGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454

Query: 391 EKA 393
            +A
Sbjct: 455 LQA 457



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           MD T C P S  ++ LV+ +  + R  D       M   GI  +V  YN L+   CK  +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 321 FKNVYRVLKDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
           +     +++DM S+G    P+  T + +L+G    G+ +E+  + + +I +    DA  Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T ++   C+   L +A ++ + M      P++ TF+ LI+G C +  +  +  LL+ M  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            G++    T+  L   L K GR    + L E+M
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 178/356 (50%), Gaps = 19/356 (5%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y  +I  L    + +  + L   M+   ++ +V T+ I++  + +   +++A   F+ M
Sbjct: 462 TYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEM 521

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNL 216
              G T N+  +  L+ A  K+K +  A E+F+ M  +   P+  TY+ L++G  K   +
Sbjct: 522 LHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQI 581

Query: 217 PRAREIFREMV---------------DTGC-NPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            +A +I+  M                   C  P+++TYG +VD LCKA RV EA  ++ +
Sbjct: 582 EKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDT 641

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M +  C P   +Y  ++  +    +++DA + F +M + G   ++  Y++ I    K N+
Sbjct: 642 MLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNR 701

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTM 379
              V +VL  M      PN      +++GL   G+TDEAY++  +M  K C  +  TYT 
Sbjct: 702 LDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTA 761

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           MI  F + G++E+  ++++ M  K   P+  T+ VLIN  C  G++ ++  LL++M
Sbjct: 762 MIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEM 817



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 158/320 (49%), Gaps = 18/320 (5%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           KVE+A   F  M++ G+  ++  +  L+ + CK+  +++A++ FD M  +   P+  TY+
Sbjct: 475 KVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYT 534

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM--- 261
            L+  + K   +P A E+F  M+  GC P++VTY  ++D  CKAG++++A  I   M   
Sbjct: 535 ALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGD 594

Query: 262 ------------DSTVCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
                       D   C  P    Y  LV      NR+++A +    M  +G   +  +Y
Sbjct: 595 IESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVY 654

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           +A+I  FCK  K ++   V   M+ +G +PN  T +  ++ L      D   +V  +M++
Sbjct: 655 DAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLE 714

Query: 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
             C  +   YT M+   C+ G+ ++A+K+   M+ K   P++ T++ +I+G    G +  
Sbjct: 715 NSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQ 774

Query: 428 SCVLLEDMIEKGIRPSGETF 447
              L  DM  KG  P+  T+
Sbjct: 775 CLELFRDMCSKGCAPNFITY 794



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/485 (22%), Positives = 207/485 (42%), Gaps = 47/485 (9%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
           DA  +ISK + +   +       Q   +++  +V +V+   +N   L   FF WA +Q  
Sbjct: 76  DAISTISKALKTGFNIETHQFFRQFRNQLNDSLVVEVMNNVKNP-ELCVKFFLWAGRQIG 134

Query: 93  YEHSVRAYHSMIESLA-----------------KIRQYQIMWDLVNAMRTKRMLN----- 130
           Y H+ + +  +++ L                  K   ++++  L+N +  K   N     
Sbjct: 135 YSHTPQVFDKLLDLLGCNVNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNM 194

Query: 131 ----------------VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
                             T+  +++ + R  K++ A      M  Y    +    +    
Sbjct: 195 ALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAY 254

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           +LCK    R+A ++ D  +D F+PD+  Y+ ++ G  +      A +I   M  + C P+
Sbjct: 255 SLCKGGKCREAFDLIDEAED-FVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPN 313

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +VTY I++    + G++     I+  M +  C P   I++ L+H Y        A   F 
Sbjct: 314 VVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFK 373

Query: 295 EMEKNGILADVAMYNALIGAFCK------ANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           +M K G      +YN  IG+ C       ++    V +   +M   GV  N    +    
Sbjct: 374 KMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFAR 433

Query: 349 GLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L G G+ D+A+++   M+ K    D  TY+ +I   C   ++EKAF +++ MK    +P
Sbjct: 434 CLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVP 493

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           S++T+++LI+  C  G++  +    ++M+ KG  P+  T+  L    +K  +  V   L 
Sbjct: 494 SVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELF 553

Query: 468 EKMNL 472
           E M L
Sbjct: 554 EMMLL 558



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 173/393 (44%), Gaps = 22/393 (5%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           SV  Y  +I+S  K    Q      + M  K    NV T+  ++  Y + +++  A   F
Sbjct: 494 SVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELF 553

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK--------DRFI--------- 197
            +M   G   N+  +  L+   CK+  + KA +I+  M+        D++          
Sbjct: 554 EMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEG 613

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  TY  L++G  K   +  A E+   M+  GC P+ + Y  ++D  CK G++ +A  +
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEV 673

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M      P  + YS  +     +NR++  +    +M +N    +V +Y  ++   CK
Sbjct: 674 FTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCK 733

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             K    Y+++  M  KG  PN  T   +++G    G+ ++   +FR M  K C  +  T
Sbjct: 734 IGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFIT 793

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y ++I   C  G L++A+K+   MK   +   + +   +I G   + I S    LL+++ 
Sbjct: 794 YRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIG--LLDELS 851

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDV-LKFLQE 468
           E    P    +  L    IK GR +V L  L+E
Sbjct: 852 ENESVPVDSLYRILIDNYIKAGRLEVALDLLEE 884



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 174/385 (45%), Gaps = 25/385 (6%)

Query: 84  FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYA 142
           F   ++ +++      Y+ M+  L +   ++   D+++ MR+   + NV T+ I++    
Sbjct: 266 FDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCL 325

Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSK 201
           R  ++       ++M   G   N   FN L+ A CKS++   A ++F  M K    P   
Sbjct: 326 RKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYL 385

Query: 202 TYSILLEGWGKDPNLPRA------REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
            Y+I +     +   P +       + + EM+D G   + V        LC AG+ D+A 
Sbjct: 386 VYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAF 445

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            I+  M      P    YS ++      +++E A   F EM++NGI+  V  Y  LI +F
Sbjct: 446 KIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSF 505

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADA 374
           CKA   +   +   +M  KG  PN  T   +++  +   +   A  +F  M ++ C+ + 
Sbjct: 506 CKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNV 565

Query: 375 DTYTMMIKMFCQGGELEKAFKVW-------------KYMKLKRFI---PSMHTFSVLING 418
            TYT +I   C+ G++EKA +++             KY KL       P++ T+  L++G
Sbjct: 566 VTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDG 625

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPS 443
           LC    V ++  LL+ M+  G  P+
Sbjct: 626 LCKANRVKEAHELLDTMLAHGCEPN 650



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 179/415 (43%), Gaps = 54/415 (13%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++I +  K +Q  +  +L   M  +    NV T+  ++  + +  ++E+A   +
Sbjct: 529 NVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIY 588

Query: 155 ---------NVMQKYGVTQ-------NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
                    + M KY           N+  +  L+  LCK+  V++A E+ D M      
Sbjct: 589 ARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCE 648

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+   Y  +++G+ K   L  A+E+F +M + G +P++ TY   +D L K  R+D  L +
Sbjct: 649 PNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKV 708

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M    C P   IY+ +V       + ++A    L+ME+ G   +V  Y A+I  F K
Sbjct: 709 LSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGK 768

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF-------------- 363
           + K +    + +DM SKG APN  T  +++N     G  DEAY++               
Sbjct: 769 SGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILS 828

Query: 364 -RRMI---------------KLCEADA----DTYTMMIKMFCQGGELEKAFKVWKYM--K 401
            R++I               +L E ++      Y ++I  + + G LE A  + + +   
Sbjct: 829 HRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSS 888

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
               + + + ++ LI  L     V  +  L   MI K + P       L K LIK
Sbjct: 889 PSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIK 943



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 146/336 (43%), Gaps = 18/336 (5%)

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
            ++ M   GV  N    +     LC +    +A +I  + M   F+PD  TYS ++    
Sbjct: 412 AYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLC 471

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               + +A  +F EM   G  P + TY I++D  CKAG + +A      M    C P   
Sbjct: 472 DASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVV 531

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK---NVY-RV 327
            Y+ L+H Y    ++  A + F  M   G   +V  Y ALI   CKA + +    +Y R+
Sbjct: 532 TYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM 591

Query: 328 LKDMNSKGV------------APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
             D+ S  +             PN  T   +++GL       EA+ +   M+   CE + 
Sbjct: 592 RGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQ 651

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y  +I  FC+ G+L+ A +V+  M  + + P+++T+S  I+ L     +     +L  
Sbjct: 652 IVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSK 711

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           M+E    P+   + ++   L K G+ D    L  KM
Sbjct: 712 MLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKM 747



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 128/300 (42%), Gaps = 37/300 (12%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I+   KI + Q   ++   M  +    N+ T+   +    +  +++  +   + M 
Sbjct: 654 YDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKML 713

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           +   T N+  +  ++  LCK     +A ++   M+++   P+  TY+ +++G+GK   + 
Sbjct: 714 ENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIE 773

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA----------------------- 254
           +  E+FR+M   GC P+ +TY ++++  C  G +DEA                       
Sbjct: 774 QCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKII 833

Query: 255 ----------LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN--GIL 302
                     +G++  +      P   +Y +L+  Y    R+E A+D   E+  +    +
Sbjct: 834 EGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAV 893

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
           ++  +Y +LI     A+K      +   M SK V P       ++ GLI   +  EA ++
Sbjct: 894 SNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQEALQL 953


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 230/519 (44%), Gaps = 75/519 (14%)

Query: 8   RNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVE 67
           R+ M S   S L  + SS+   E        ++ +    K +LDT++        P +  
Sbjct: 101 RHYMFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLAT 160

Query: 68  DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK-------IRQYQIMWDLV 120
            +  K                K+ NY  ++   ++++ SL +       +   Q++ D  
Sbjct: 161 QIFNKM---------------KRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKD-- 203

Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
            +++   + N  +F I++  Y    KV++A+   N M ++G   +  ++N +L AL K +
Sbjct: 204 -SIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRR 262

Query: 181 NVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            +++A+++   MK + + P+  TY++L+ G+ +   L  A ++   M      P + TY 
Sbjct: 263 LLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYN 322

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH--------------------- 278
           ++V+  C  G++DEA  I   M+     P    Y+ L+                      
Sbjct: 323 MLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKK 382

Query: 279 -------TYGV-------ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
                  TY +       +  + +A  T  +ME+NG+  D   YN LIGA+CKA K    
Sbjct: 383 GVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKA 442

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-------DADTY 377
           +R++ +M SKG+  ++ T N IL+ L    + DEAY +      LC A       D  +Y
Sbjct: 443 FRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNL------LCSASKRGYILDEVSY 496

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I  + +  + ++A  +W  MK ++ +PS  T++ +I GLC    V  +   L +M+E
Sbjct: 497 GILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLE 556

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVK 475
            G+ P   T+  +      EG  E   +F  E +  L K
Sbjct: 557 NGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFK 595



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 186/409 (45%), Gaps = 39/409 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y++++++L K R  Q   DL+  M++K +  N  T+ +++  Y R+  ++EA     +M
Sbjct: 250 SYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIM 309

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEG---WG-- 211
            +  +   +  +N L++  C    + +A  I D M K   +PD  TY+ L++G   W   
Sbjct: 310 TRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDS 369

Query: 212 ------------------------------KDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
                                         K  N+  A     +M + G +PD VTY  +
Sbjct: 370 SEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTL 429

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +   CKAG++ +A  ++  M S   +  ++  + ++H   VE ++++A +      K G 
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGY 489

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           + D   Y  LI  + K  K      +  +M  + + P++ T N ++ GL    + D+A  
Sbjct: 490 ILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAID 549

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
               M++     D  TY ++I  FC  G +EKAF+    M    F P ++T ++L+ GLC
Sbjct: 550 KLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLC 609

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +G++  +  L   ++ KG      T+  +   L KEG+ E+    L E
Sbjct: 610 REGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTE 658



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 180/432 (41%), Gaps = 83/432 (19%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I+  ++ R    ++ L+  M  K +  N  T+ II++   +   + EA  T +
Sbjct: 353 VVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLD 412

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-------------------- 195
            M++ G++ +   +N L+ A CK+  + KA  + D M  +                    
Sbjct: 413 KMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEK 472

Query: 196 ----------------FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                           +I D  +Y IL+ G+ KD    RA  ++ EM +    P  +TY 
Sbjct: 473 KLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYN 532

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++  LC++ +VD+A+  +  M      P    Y++++H + +E  +E A     EM +N
Sbjct: 533 SVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIEN 592

Query: 300 -------------------GILA----------------DVAMYNALIGAFCKANKFKNV 324
                              G+L                 DV  YN +I + CK  KF+N 
Sbjct: 593 LFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENA 652

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384
           Y +L +M +K + P+  T  +I+  L   G   EA     +M++        +   +K+ 
Sbjct: 653 YDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVE----SGIVHDQNLKL- 707

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
              G+     +V ++   K        +S  IN LC++    D+  L  ++ ++G+  + 
Sbjct: 708 -GKGQNVLTSEVSEHFDFKSI-----AYSDQINELCNQHKYKDAMHLFVEVTKEGVALNK 761

Query: 445 ETFGKLRKLLIK 456
            T+  L + LIK
Sbjct: 762 YTYLNLMEGLIK 773



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 128/263 (48%), Gaps = 28/263 (10%)

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           +WD    M+ ++++ +  T+  ++    + +KV++A+   N M + G+  +   +N ++ 
Sbjct: 515 LWD---EMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIH 571

Query: 175 ALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
             C   NV KA +  + M ++ F PD  T +ILL G  ++  L +A ++F  +V  G + 
Sbjct: 572 GFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDI 631

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+VTY  ++  LCK G+ + A  ++  M++    P  + Y V++       RI++A +  
Sbjct: 632 DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFT 691

Query: 294 LEMEKNGILADVAM-----------------------YNALIGAFCKANKFKNVYRVLKD 330
           L+M ++GI+ D  +                       Y+  I   C  +K+K+   +  +
Sbjct: 692 LKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVE 751

Query: 331 MNSKGVAPNSRTCNIILNGLIGR 353
           +  +GVA N  T   ++ GLI R
Sbjct: 752 VTKEGVALNKYTYLNLMEGLIKR 774



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 38/281 (13%)

Query: 77  GTLAFCFFK----------WAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           G L   +FK          W E K++    S   Y+S+I  L + R+     D +N M  
Sbjct: 497 GILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLE 556

Query: 126 KRMLNVET-FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
             ++  ET + II+  +     VE+A    N M +     ++   N LL  LC+   + K
Sbjct: 557 NGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEK 616

Query: 185 AQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           A ++F+ +  K + I D  TY+ ++    K+     A ++  EM      PD  TY +++
Sbjct: 617 ALKLFNTLVSKGKDI-DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVII 675

Query: 243 DVLCKAGRVDEA---------LGIVKSMDSTVCRPT--------------SFIYSVLVHT 279
             L  AGR+ EA          GIV   +  + +                S  YS  ++ 
Sbjct: 676 AALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINE 735

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
              +++ +DA+  F+E+ K G+  +   Y  L+    K  K
Sbjct: 736 LCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRK 776


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 6/309 (1%)

Query: 145 QKVEEAV-YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD----RFIPD 199
           ++V+EA+      M ++G   N+ + N LL  LC  K V +A E+   M +       P+
Sbjct: 139 KRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPN 198

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TY+ +++G  K   + RA  + + M+D G   D+VTY  ++D LCKA  VD A G+++
Sbjct: 199 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQ 258

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            M     +P    Y+ ++        ++ A      M   G+  DV  YN +I   CKA 
Sbjct: 259 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQ 318

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
                  VL+ M  K V P+ +T N +++G +  GE  E  R    M  +  + D  TY+
Sbjct: 319 AVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
           +++   C+ G+  +A K++  M  K   P++  + +L++G   +G ++D   LL+ M+  
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 439 GIRPSGETF 447
           GI P+   F
Sbjct: 439 GISPNNYIF 447



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  I+    + Q V+ A      M   GV  ++  ++ ++  LCK++ V +A+ + 
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL 257

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M D+ + PD  TY+ +++G  K   + RA  + + M+D G  PD+VTY  ++D LCKA
Sbjct: 258 QHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 317

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             VD A G+++ M     +P    Y+ L+H Y      ++ V    EM   G+  DV  Y
Sbjct: 318 QAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTY 377

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           + L+   CK  K     ++   M  KG+ PN     I+L+G   RG   +   +   M+ 
Sbjct: 378 SLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVA 437

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                +   + +++  + +   +++A  ++  M      P + T+ +LI+ LC  G V D
Sbjct: 438 NGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDD 497

Query: 428 SCVLLEDMIEKGIRPSGETFGKL 450
           + +    MI  G+ P+   F  L
Sbjct: 498 AVLKFNQMINDGVTPNSVVFNSL 520



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 199/454 (43%), Gaps = 79/454 (17%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I+ L K +       ++  M  K +  +++T+  ++  Y    + +E V    
Sbjct: 304 VVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLE 363

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW---- 210
            M   G+  ++  ++ LL  LCK+    +A++IF CM  + I P+   Y ILL G+    
Sbjct: 364 EMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARG 423

Query: 211 ---------------GKDPN----------------LPRAREIFREMVDTGCNPDIVTYG 239
                          G  PN                +  A  IF  M   G +PD+VTYG
Sbjct: 424 AIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYG 483

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           I++D LCK GRVD+A+     M +    P S +++ LV+     +R E A + F EM   
Sbjct: 484 ILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ 543

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  +V  +N ++   C   +     R++  M   GV PN  + N ++ G    G TDEA
Sbjct: 544 GVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEA 603

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---------- 408
            ++   M+ +  + D  +Y  +++ +C+ G ++ A+ +++ M  K   P           
Sbjct: 604 AQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQG 663

Query: 409 -------------------------MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
                                    ++T+++++NGLC    V ++  + + +  K +RP+
Sbjct: 664 LFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPN 723

Query: 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
             TF  +  +L K GR+      ++ M+L    P
Sbjct: 724 IITFTIMIDVLFKGGRK------KDAMDLFASIP 751



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 172/347 (49%), Gaps = 7/347 (2%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG---VTQNLAAFNGLLSALCKSKNVRK 184
           M NV +   +++     ++VEEA+   + M + G    T N+  +N ++  LCK++ V +
Sbjct: 158 MPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDR 217

Query: 185 AQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A+ +   M D+ +  D  TYS +++G  K   + RA  + + M+D G  PD+VTY  ++D
Sbjct: 218 AEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIID 277

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            LCKA  VD A G+++ M     +P    Y+ ++        ++ A      M    +  
Sbjct: 278 GLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKP 337

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D+  YN LI  +    ++K V R L++M ++G+ P+  T +++L+ L   G+  EA ++F
Sbjct: 338 DIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIF 397

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
             MI K  + +   Y +++  +   G +     +   M      P+ + F++++     K
Sbjct: 398 YCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKK 457

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED--VLKFLQ 467
            ++ ++  +   M + G+ P   T+G L   L K GR D  VLKF Q
Sbjct: 458 AMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQ 504



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 175/403 (43%), Gaps = 38/403 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I+ L K +       ++  M  K +  +V T+  I+    + Q V+ A     
Sbjct: 234 VVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI------------------ 197
            M   GV  ++  +N ++  LCK++ V +A  +   M D+ +                  
Sbjct: 294 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTG 353

Query: 198 ------------------PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
                             PD  TYS+LL+   K+     AR+IF  M+  G  P++  YG
Sbjct: 354 EWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYG 413

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           I++      G + +   ++  M +    P ++I+++++  Y  +  I++A+  F  M ++
Sbjct: 414 ILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQH 473

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  DV  Y  LI A CK  +  +       M + GV PNS   N ++ GL      ++A
Sbjct: 474 GLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKA 533

Query: 360 YRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +F  M  +    +   +  ++   C  G++  A ++   M+     P++ +++ LI G
Sbjct: 534 EELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGG 593

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            C  G   ++  LL+ M+  G++P   ++  L +   K GR D
Sbjct: 594 HCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRID 636



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 162/335 (48%), Gaps = 13/335 (3%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK---SKNVRKAQEIFDCM----KDRFIPD 199
           +++A+  F+ +  +    ++ AFN LL+ + +   S     A  +F+ M     ++  PD
Sbjct: 30  IDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD 89

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI-V 258
             TYSIL   + +   +      F  ++ TG   + V    +++ LC A RVDEA+ I +
Sbjct: 90  LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAF 315
           + M    C P     + L+     E R+E+A++    M ++G      +V  YN +I   
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CKA        VL+ M  KGV  +  T + I++GL      D A  V + MI K  + D 
Sbjct: 210 CKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDV 269

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +I   C+   +++A  V ++M  K   P + T++ +I+GLC    V  +  +L+ 
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQH 329

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           MI+K ++P  +T+  L    +  G  ++V++ L+E
Sbjct: 330 MIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEE 364



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 37/377 (9%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+ I++    ++ +V++AV  FN M   GVT N   FN L+  LC      KA+E+F
Sbjct: 478 DVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELF 537

Query: 190 DCMKDRFI------------------------------------PDSKTYSILLEGWGKD 213
             M D+ +                                    P+  +Y+ L+ G    
Sbjct: 538 FEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLA 597

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                A ++   MV  G  PD+++Y  ++   CK GR+D A  + + M      P +  Y
Sbjct: 598 GRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           S ++       R  +A + +L M K+G   D+  YN ++   CK N     +++ + + S
Sbjct: 658 STILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCS 717

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
           K + PN  T  I+++ L   G   +A  +F  +       +  TY +M+K   Q G L++
Sbjct: 718 KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDE 777

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
              ++  M+     P     + +I  L  +G +  +   L  + E        T   L  
Sbjct: 778 FDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLIS 837

Query: 453 LLIKEGREDVLKFLQEK 469
           L  +E  ++  K L EK
Sbjct: 838 LFSREEYKNHAKSLPEK 854



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 9/212 (4%)

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP    YS+L   +    RIE     F  + K G   +  + N L+   C A +      
Sbjct: 87  RPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMD 146

Query: 327 VL-KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMI 381
           +L + M   G  PN  +CN +L GL      +EA  +   M +     C  +  TY  +I
Sbjct: 147 ILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTII 206

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
              C+   +++A  V ++M  K     + T+S +I+GLC    V  +  +L+ MI+KG++
Sbjct: 207 DGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVK 266

Query: 442 PSGETFGKLRKLLIK----EGREDVLKFLQEK 469
           P   T+  +   L K    +  E VL+ + +K
Sbjct: 267 PDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDK 298


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 182/370 (49%), Gaps = 45/370 (12%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAV 151
           S +A  S +  L    Q  ++  L+  +  KR L    NV  F I+++ + R   ++ A 
Sbjct: 236 SPKAISSCLNLLVDSNQVDLVRKLL--LYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAF 293

Query: 152 YTFNVMQ--KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILL 207
                M+  KY    N+  ++ L+  LC++  +++A E+F+ M  KD+ +PD  TY++L+
Sbjct: 294 EVVKEMRNSKYSYP-NVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLI 352

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+ ++    RAR +   M + GC P++  Y  +VD LCKAG++ +A G++  M S+  +
Sbjct: 353 NGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLK 412

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P +  Y+ L++ +    +I++A++   EM++N   AD   +N ++G  C+  +F     +
Sbjct: 413 PDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDM 472

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387
           ++ +  +GV  N  +  I+LN L                                   Q 
Sbjct: 473 IEKLPQQGVYLNKGSYRIVLNSLT----------------------------------QN 498

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            EL KA K+   M  + F+P   T + L+  LC +G+ +D+   L D+++ G +P  +++
Sbjct: 499 CELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSW 558

Query: 448 GKLRKLLIKE 457
             L  L+ ++
Sbjct: 559 ELLIDLICRD 568



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 141/295 (47%), Gaps = 15/295 (5%)

Query: 178 KSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           + K+ + A +IF+ + ++  F  ++ TY+ +L+   +         +  +M    C    
Sbjct: 142 REKDPQHALKIFNMVSEQKGFNHNNATYATILQKLAQFKKFQAVDRVLHQMTYEACK--- 198

Query: 236 VTYGIMVDVL---CKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVD 291
              G+ ++++    K G  ++      S+ + V  +P+    S  ++     N++ D V 
Sbjct: 199 FHEGVFINLMKHYSKCGFHEKVFDAFLSIQTIVREKPSPKAISSCLNLLVDSNQV-DLVR 257

Query: 292 TFLEMEKNGIL--ADVAMYNALIGAFCKANKFKNVYRVLKDM-NSKGVAPNSRTCNIILN 348
             L   K  ++   +V ++N L+   C+     + + V+K+M NSK   PN  T + +++
Sbjct: 258 KLLLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMD 317

Query: 349 GLIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           GL   G   EA+ +F  M+   +   D  TY ++I  FC+ G+ ++A  V ++MK     
Sbjct: 318 GLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCC 377

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           P++  +S L++GLC  G + D+  +L +M   G++P   T+  L     + G+ D
Sbjct: 378 PNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQID 432



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 9/218 (4%)

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKANKF 321
           S V +P   I+++LV  +     I+ A +   EM  +     +V  Y+ L+   C+  + 
Sbjct: 266 SLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRL 325

Query: 322 KNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
           K  + + ++M SK  + P+  T N+++NG    G+ D A  V   M    C  +   Y+ 
Sbjct: 326 KEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSA 385

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           ++   C+ G+L+ A  V   MK     P   T++ LIN     G + ++  LL +M E  
Sbjct: 386 LVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKEND 445

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            +    TF  +   L +EGR D      E ++++ K P
Sbjct: 446 CQADTVTFNVILGGLCREGRFD------EALDMIEKLP 477


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 41/409 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKV 147
           +Q ++H++  Y SM++ L    ++  M +L++ MR+     L    +   MR Y R  K+
Sbjct: 112 KQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKI 171

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           +EAV TF  M  +    ++ ++N +++ L +     +A +++  MKD+ +  D  TY+I 
Sbjct: 172 QEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIR 231

Query: 207 LEGWGKDP----------NLP-------------------------RAREIFREMVDTGC 231
           ++ + +            N+P                         RARE+F EM++   
Sbjct: 232 IKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCL 291

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIV-KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
            PD+ T+  +V  LCK G V E+  +  K +   VC P  F +++ +     E  ++ AV
Sbjct: 292 CPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVC-PNLFTFNIFIQGLCKEGSLDRAV 350

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
                + + G+  DV  YN +I   C+ ++       L  M + G  PN  T N I++G 
Sbjct: 351 RLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGY 410

Query: 351 IGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             +G   +A R+ +  + K  + D  TY  ++  FCQ G+ ++A  V+K    K   PS+
Sbjct: 411 CKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSI 470

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
             ++ LI GLC +G++  +  L+ +M EKG +P   T+  +   L K G
Sbjct: 471 IVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMG 519



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 161/330 (48%), Gaps = 3/330 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+C ++  + +    ++A+  F      G+  ++  +N L+  LC+   +  A ++ + M
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++   PD  TY++++ G  K   L  A  +  + +  GC PDI TY  +VD  C+  ++
Sbjct: 497 AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKL 556

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D A+ +V  M S    P    Y+ L++      + E+ ++ F  M + G   ++  YN +
Sbjct: 557 DSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTI 616

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I + C + K      +L +M SKG+ P+  +   ++ G    G+ D AY +FR M K  +
Sbjct: 617 IESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYD 676

Query: 372 AD--ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
                 TY ++I  F +   ++ A +++  MK     P  +T+ VLI+G C  G V+   
Sbjct: 677 VSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGY 736

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             L + IEKG  PS  TFG++   L  E +
Sbjct: 737 KFLLENIEKGFIPSLTTFGRVLNCLCVEHK 766



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 147/296 (49%), Gaps = 3/296 (1%)

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLE 208
           A+   N M + G   ++  +N +++ LCK   +  A  +  D +    IPD  TY+ L++
Sbjct: 489 ALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVD 548

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+ +   L  A E+   M   G  PD++TY  +++ LCK  + +E + I K+M    C P
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP 608

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
               Y+ ++ +     ++ +AVD   EM+  G+  DV  +  LI  FCK       Y + 
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF 668

Query: 329 KDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQ 386
           + M  +  V+  + T NII++    +     A R+F  M K  C+ D  TY ++I  FC+
Sbjct: 669 RGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCK 728

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            G + + +K       K FIPS+ TF  ++N LC +  V ++  ++  M++K I P
Sbjct: 729 TGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 174/362 (48%), Gaps = 3/362 (0%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEA 150
           N + SV +Y++++  L +   +     +   M+ K++  +V T+ I ++ + R  +   A
Sbjct: 185 NCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAA 244

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
           +     M   G   N  A+  +++   +  +  +A+E+FD M +    PD  T++ L+  
Sbjct: 245 LRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHA 304

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
             K   +  +  +F +++  G  P++ T+ I +  LCK G +D A+ ++  +     RP 
Sbjct: 305 LCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPD 364

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ ++     ++R+ +A +   +M   G   +   YN++I  +CK     +  R+LK
Sbjct: 365 VVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILK 424

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGG 388
           D   KG  P+  T   ++NG    G+ D+A  VF+  + K        Y  +IK  CQ G
Sbjct: 425 DAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQG 484

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
            +  A ++   M  K   P + T++++INGLC  G +SD+  L+ D I KG  P   T+ 
Sbjct: 485 LILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYN 544

Query: 449 KL 450
            L
Sbjct: 545 TL 546



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 143/308 (46%), Gaps = 2/308 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++    R  +V EA    + M   G   N   +N ++   CK   V  A  I 
Sbjct: 364 DVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRIL 423

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D +   F PD  TY  L+ G+ +D +  +A  +F++ +  G  P I+ Y  ++  LC+ 
Sbjct: 424 KDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQ 483

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +  AL ++  M    C+P  + Y+++++       + DA     +    G + D+  Y
Sbjct: 484 GLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTY 543

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N L+  +C+  K  +   ++  M S+G+ P+  T N +LNGL    +++E   +F+ M  
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTE 603

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K C  +  TY  +I+  C   ++ +A  +   MK K   P + +F  LI G C  G +  
Sbjct: 604 KGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDG 663

Query: 428 SCVLLEDM 435
           +  L   M
Sbjct: 664 AYGLFRGM 671



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 131/275 (47%), Gaps = 3/275 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y+ +I  L K+        L+    TK  + ++ T+  ++  Y R  K++ A+   N
Sbjct: 505 IWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVN 564

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   G+T ++  +N LL+ LCK+    +  EIF  M ++   P+  TY+ ++E      
Sbjct: 565 RMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSK 624

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIY 273
            +  A ++  EM   G  PD+V++G ++   CK G +D A G+ + M+       T+  Y
Sbjct: 625 KVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATY 684

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++++  +  +  ++ A+  F EM+KNG   D   Y  LI  FCK       Y+ L +   
Sbjct: 685 NIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIE 744

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           KG  P+  T   +LN L    +  EA  +   M++
Sbjct: 745 KGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQ 779



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 138/301 (45%), Gaps = 42/301 (13%)

Query: 9   NKMISGCISFLRRYNS---SEPSTEALDAAKSISKIMLS---SPKVVLDTALDQSGIRVS 62
           + +  GCI  +  YN+          LD+A  +   M S   +P V+    L     + +
Sbjct: 530 DAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTA 589

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
               E+V+E F+            A  ++    ++  Y+++IESL   ++     DL+  
Sbjct: 590 KS--EEVMEIFK------------AMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGE 635

Query: 123 MRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALCKSK 180
           M++K +  +V +F  ++  + +V  ++ A   F  M+K Y V+   A +N ++SA  +  
Sbjct: 636 MKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQL 695

Query: 181 NVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
           N++ A  +F  MK     PD+ TY +L++G+ K  N+ +  +   E ++ G  P + T+G
Sbjct: 696 NMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFG 755

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +++ LC   +V EA+GI                   +H    ++ + D V+T  E +K 
Sbjct: 756 RVLNCLCVEHKVQEAVGI-------------------IHLMVQKDIVPDTVNTIFEADKK 796

Query: 300 G 300
           G
Sbjct: 797 G 797



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           + G++ EA+   + MD   C P+ + Y+ +++          A   ++ M+   + +DV 
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
            Y   I +FC+  +     R+L++M   G   N+     ++ G    G+ D A  +F  M
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 367 IKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++ C   D  T+  ++   C+ G + ++ +++  +  +   P++ TF++ I GLC +G +
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSL 346

Query: 426 SDSCVLLEDMIEKGIRPSGETF-----GKLRKLLIKEGRE 460
             +  LL  +  +G+RP   T+     G  RK  + E  E
Sbjct: 347 DRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEE 386


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 190/391 (48%), Gaps = 15/391 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           +Q  +  V  Y+++I  L K  ++Q     +  +VN           T      K   VQ
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338

Query: 146 KVEEAV--YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
             E  V    FN     G   +   +  L+  LC      +A  +F+    + I P+   
Sbjct: 339 LAERIVGDAVFN-----GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           Y+ L++G      +  A ++  EM + G  P++ T+ I+V+ LCK G V +A G+VK M 
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
           S    P  F +++L+H Y  + ++E+A++    M  NG+  DV  YN+L+   CK +KF+
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
           +V    K M  KG APN  T NI+L  L    + DEA  +   M  K    DA T+  +I
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573

Query: 382 KMFCQGGELEKAFKVWKYM-KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             FC+ G+L+ A+ +++ M +  +   S  T++++I+   +K  V+ +  L ++M+++ +
Sbjct: 574 DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCL 633

Query: 441 RPSGETFGKLRKLLIKEGREDV-LKFLQEKM 470
            P G T+  +     K G  ++  KFL E M
Sbjct: 634 GPDGYTYRLMVDGFCKTGNVNLGYKFLLEMM 664



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 166/348 (47%), Gaps = 4/348 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I+ L    +      L N    K +  NV  +  +++  +    + EA    N M
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEM 417

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
            + G+   +  FN L++ LCK   V  A  +   M  + + PD  T++IL+ G+     +
Sbjct: 418 SEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKM 477

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A EI   M+D G +PD+ TY  +++ LCK  + ++ +   K+M    C P  F +++L
Sbjct: 478 ENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN-SKG 335
           + +     ++++A+    EM+   +  D   +  LI  FCK       Y + + M  +  
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAF 394
           V+ ++ T NII++    +     A ++F+ M+  C   D  TY +M+  FC+ G +   +
Sbjct: 598 VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGY 657

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           K    M    FIPS+ T   +IN LC +  V ++  ++  M++KG+ P
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 174/418 (41%), Gaps = 74/418 (17%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCI 136
           A   F    K+  ++H++  Y S+IE L    +++ M +++  MR      ML    +  
Sbjct: 23  ALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLE-GVYVG 81

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
            M+ Y R  KV+EAV  F  M  Y     + ++N ++S L  S    +A +++  M+DR 
Sbjct: 82  AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR- 140

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                                            G  PD+ ++ I +   CK  R   AL 
Sbjct: 141 ---------------------------------GITPDVYSFTIRMKSFCKTSRPHAALR 167

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++ +M S  C      Y  +V  +  EN   +  + F +M  +G+   ++ +N L+   C
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC 227

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-------- 368
           K    K   ++L  +  +GV PN  T N+ + GL  RGE D A R+   +I+        
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVI 287

Query: 369 --------LC--------------------EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
                   LC                    E D+ TY  +I  +C+GG ++ A ++    
Sbjct: 288 TYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDA 347

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
               F+P   T+  LI+GLC +G  + +  L  + + KGI+P+   +  L K L  +G
Sbjct: 348 VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQG 405



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 40/358 (11%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V ++   ++S  K  +      L+N M ++   +NV  +C ++  +       E    F 
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDP 214
            M   GV+  L+ FN LL  LCK  +V++ +++ D  +K   +P+  TY++ ++G  +  
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +   +++ G  PD++TY  ++  LCK  +  EA                    
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA-------------------- 305

Query: 275 VLVHTYGVENRIEDAVDTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
                           + +L +M   G+  D   YN LI  +CK    +   R++ D   
Sbjct: 306 ----------------EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVF 349

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
            G  P+  T   +++GL   GET+ A  +F   + K  + +   Y  +IK     G + +
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           A ++   M  K  IP + TF++L+NGLC  G VSD+  L++ MI KG  P   TF  L
Sbjct: 410 AAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNIL 467



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 14/290 (4%)

Query: 179 SKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
            K+  KA E+F+ M+    F     TY  ++E  G         E+  +M +   N   +
Sbjct: 17  QKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNH--M 74

Query: 237 TYGIMVDVL---CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
             G+ V  +    + G+V EA+ + + MD   C PT F Y+ ++         + A   +
Sbjct: 75  LEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY 134

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           + M   GI  DV  +   + +FCK ++     R+L +M+S+G   N      ++ G    
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEE 194

Query: 354 GETDEAYRVFRRM----IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
               E Y +F +M    + LC     T+  ++++ C+ G++++  K+   +  +  +P++
Sbjct: 195 NFKAEGYELFGKMLASGVSLC---LSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNL 251

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            T+++ I GLC +G +  +  ++  +IE+G +P   T+  L   L K  +
Sbjct: 252 FTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSK 301



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 120/282 (42%), Gaps = 38/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V+ ++ ++  L K+        LV  M +K    ++ TF I++  Y+   K+E A+   +
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD 485

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
           VM   GV  ++  +N LL+ LCK+       E +  M ++   P+  T++ILLE   +  
Sbjct: 486 VMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIY 273
            L  A  +  EM +   NPD VT+G ++D  CK G +D A  + + M+       ++  Y
Sbjct: 546 KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY 605

Query: 274 SVLVHTYG-------VENRIEDAVDT----------------------------FLEMEK 298
           ++++H +         E   ++ VD                              LEM +
Sbjct: 606 NIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME 665

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
           NG +  +     +I   C  ++      ++  M  KG+ P +
Sbjct: 666 NGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA 707


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 164/334 (49%), Gaps = 9/334 (2%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRF 196
           M+ Y+ V  +         M  +G+  N+   N L+++ C  + +  A  +    +K   
Sbjct: 72  MKHYSTVLSLSHQ------MDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGH 125

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  T++ L+ G   +  +     +F +M+  G  P++VTYG +++ LCK G    A+ 
Sbjct: 126 QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIR 185

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++SM+   C+P   +Y+ ++ +   + ++  A + F EM   GI   +  YN+LI A C
Sbjct: 186 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 245

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
              ++K+V  +L +M +  + PN    + +++ L   G+  EA+ V   MIK   E +  
Sbjct: 246 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 305

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY  ++   C   E+++A KV+  M  K F P + ++S LING C    +  +  L E+M
Sbjct: 306 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 365

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             K + P+  T+  L   L   GR +D +    E
Sbjct: 366 CRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHE 399



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 228/517 (44%), Gaps = 52/517 (10%)

Query: 3   KVYHSR----NKMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALD 55
             +HS+    N +     SF R  +   P + A D  K   SI+K+   S  + L   +D
Sbjct: 28  NTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIA-DFTKLLISITKMKHYSTVLSLSHQMD 86

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIR 111
             GI  +   +  ++  F +   L F F   A+  +  ++ ++  ++++I  L    KI 
Sbjct: 87  SFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIG 146

Query: 112 QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +   ++D    +      NV T+  ++    +V     A+     M++     ++  +  
Sbjct: 147 EVLHLFD--KMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTS 204

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           ++ +LCK + V +A  +F  M  + I P   TY+ L+              +  EMV++ 
Sbjct: 205 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P++V +  +VD LCK G+V EA  +V  M      P    Y+ L+  + + + +++AV
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F  M   G   DV  Y+ LI  +CK  + +    + ++M  K + PN+ T + +++GL
Sbjct: 325 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 384

Query: 351 IGRGETDEAYRVFRRMIK----------------LC--------------------EADA 374
              G   +A  +F  M+                 LC                    + D 
Sbjct: 385 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 444

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             YT++I   C+ GELE A  ++  +  K   P++ T++++INGLC +G+++++  L  +
Sbjct: 445 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 504

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQEKM 470
           M  KG  P+G T+  + +  ++       ++ LQE +
Sbjct: 505 MKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEML 541



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 186/387 (48%), Gaps = 8/387 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +Q N +  V  Y S+I+SL K RQ    ++L + M  + +  ++ T+  ++     + + 
Sbjct: 191 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 250

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           +      N M    +  N+  F+ ++ ALCK   V +A ++ D M  R + P+  TY+ L
Sbjct: 251 KHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 310

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G      +  A ++F  MV  G  PD+V+Y  +++  CK  R+++A+ + + M     
Sbjct: 311 MDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 370

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  YS L+H      R++DA+  F EM   G + D   Y  L+   CK  +      
Sbjct: 371 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIA 430

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +LK +    + P+ +   I+++G+   GE + A  +F  +  K    +  TYT+MI   C
Sbjct: 431 LLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC 490

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q G L +A K++  MK K + P+  T++++  G            LL++M+ +G      
Sbjct: 491 QQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVS 550

Query: 446 TFGKLRKLLIKEGREDVLK-----FLQ 467
           T   L ++L  +G +  +K     FLQ
Sbjct: 551 TSTVLVEMLSDDGLDQSVKQILSEFLQ 577


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 185/377 (49%), Gaps = 3/377 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I  L K  +Y     +++ M    M  +  T+ I++ +  R   + +A   F+
Sbjct: 324 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 383

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   GV  +L +F+ L+  L K+  + +A + F  MK+    PD+  Y+IL+ G+ ++ 
Sbjct: 384 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 443

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A ++  EM++ GC  D+VTY  +++ LCK   + EA  +   M      P  + ++
Sbjct: 444 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 503

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ Y  +  +  AV  F  M +  +  DV  YN LI  FCK ++ + V  +  DM S+
Sbjct: 504 TLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 563

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
            + PN  +  I++NG    G   EA+R++  M+ K  EA   T   ++K +C+ G   KA
Sbjct: 564 RIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKA 623

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +    M LK  +P   T++ LING   +  +  +  L+  M   G+ P   T+  +   
Sbjct: 624 DEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 683

Query: 454 LIKEGREDVLKFLQEKM 470
             ++GR    + +  KM
Sbjct: 684 FSRQGRMQEAELIMLKM 700



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 55/414 (13%)

Query: 92  NYEHSVRAYHSMIESLAKIRQY----QIMWDLVNAMRTKRMLNVET-------------- 133
           N++HS++++ +MI  L + R+      ++  +V      R+  VE+              
Sbjct: 127 NFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV 186

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQ----------------------------------- 158
           F +++R Y + +K+ E    F V++                                   
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
           + GV  N+   N +++ALCK++ +   +     M+++ + PD  TY+ L+  + +   L 
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A E+   M   G  P + TY  +++ LCK G+   A G++  M      P +  Y++L+
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 366

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                 + + DA   F EM   G++ D+  ++ALIG   K        +  +DM + G+A
Sbjct: 367 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 426

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           P++    I++ G    G   EA +V   M++  C  D  TY  ++   C+   L +A ++
Sbjct: 427 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 486

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +  M  +   P  +TF+ LING    G ++ +  L E MI++ ++P   T+  L
Sbjct: 487 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 540



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 153/311 (49%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  + R   + EA+   + M + G   ++  +N +L+ LCK K + +A E+F  M 
Sbjct: 432 YTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMT 491

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R + PD  T++ L+ G+ KD N+ +A  +F  M+     PD+VTY  ++D  CK   ++
Sbjct: 492 ERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME 551

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +   +   M S    P    Y +L++ Y     + +A   + EM + G  A +   N ++
Sbjct: 552 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 611

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +C+A         L +M  KG+ P+  T N ++NG I     D A+ +  +M      
Sbjct: 612 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLL 671

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY +++  F + G +++A  +   M  +   P   T++ LING   +  + ++  +
Sbjct: 672 PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 731

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 732 HDEMLQRGFVP 742



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 8/285 (2%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+V T+  I+    + + + EA   F  M + GV  +   F  L++   K  N+ KA  
Sbjct: 461 VLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVT 520

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +F+ M  R + PD  TY+ L++G+ K   + +  E++ +M+     P+ ++YGI+++  C
Sbjct: 521 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 580

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV--DTFLE-MEKNGILA 303
             G V EA  +   M       T    + +V  Y    R  +AV  D FL  M   GI+ 
Sbjct: 581 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVP 637

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D   YN LI  F K       + ++  M + G+ P+  T N+ILNG   +G   EA  + 
Sbjct: 638 DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIM 697

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            +MI +    D  TYT +I        L++AF+V   M  + F+P
Sbjct: 698 LKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 37/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++++  L K +      +L   M  + +  +  TF  ++  Y++   + +AV  F 
Sbjct: 464 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
           +M +  +  ++  +N L+   CK   + K  E++ D +  R  P+  +Y IL+ G+    
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 583

Query: 215 NLPRAREIFREMVDTG-------CN----------------------------PDIVTYG 239
            +  A  ++ EMV+ G       CN                            PD +TY 
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 643

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +++   K   +D A  +V  M+++   P    Y+V+++ +  + R+++A    L+M + 
Sbjct: 644 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIER 703

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           G+  D + Y +LI      N  K  +RV  +M  +G  P+ +
Sbjct: 704 GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDK 745



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 105/226 (46%), Gaps = 23/226 (10%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           ++  M+ +L ++ R+ +A  ++  M   S V R    I   LV TYG             
Sbjct: 134 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVE--IVESLVLTYG------------- 178

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
                   ++  +++ L+  + +A K +      + + SKG+  +   CN +L GL+  G
Sbjct: 179 -----NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVG 233

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             D A+ +++ +++   + +  T  +MI   C+  ++E        M+ K   P + T++
Sbjct: 234 WVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYN 293

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            LIN  C +G++ ++  L++ M  KG++P   T+  +   L K G+
Sbjct: 294 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 339


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 193/413 (46%), Gaps = 39/413 (9%)

Query: 61  VSPEIVEDVLE-KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           +SP  V  VL  + R     AF FF+WA++Q  Y H+                       
Sbjct: 93  LSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHA----------------------- 129

Query: 120 VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
                         F  +M  Y+R  K+  A+   ++MQK G   +++  N  ++ L  +
Sbjct: 130 ------------PEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVA 177

Query: 180 KNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             V KA E  + M+   + PD  TY+ L++G      +  A E+   M+  GC PD ++Y
Sbjct: 178 GRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISY 237

Query: 239 GIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
             ++  LCK  RV+E  G+++ M +     P    Y+VL+H        ++A++   E E
Sbjct: 238 YTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESE 297

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
                 D   Y+A++ +FC   +      ++ +M SKG  P+  T + +++G    GE D
Sbjct: 298 GKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELD 357

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           +A ++ + M K  C+ +  T+T ++   C+ G+  +A+++    + + + PS  T+SV++
Sbjct: 358 QARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVM 417

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
           +G   +G + +SC ++  M++KG  P+      L   L K+G+    K   E+
Sbjct: 418 HGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQ 470



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 160/352 (45%), Gaps = 37/352 (10%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNV 156
           +Y++++  L K ++ + +  L+  MR    L  +  T+ +++   A+    +EA+     
Sbjct: 236 SYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRE 295

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
            +      +   ++ ++ + C +  + +A+EI   M  +   PD  TYS +++G+ +   
Sbjct: 296 SEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGE 355

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L +AR++ + M    C P+ VT+  +++ LCK G+  EA  ++   +     P+   YSV
Sbjct: 356 LDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSV 415

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++H +  E +++++ D  ++M + G        N LI A CK  K       ++   SKG
Sbjct: 416 VMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKG 475

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
                                             C  +   +T +I  F + G+LE A  
Sbjct: 476 ----------------------------------CTINVVNFTTVIHGFSRQGDLESALS 501

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +   M L    P + T++V+++ L  KG + ++  L+E M+ +G+ P+  T+
Sbjct: 502 LMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTY 553



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 130/285 (45%), Gaps = 18/285 (6%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           + +++  L K+ +    W+L+N    +     + T+ ++M  + R  K++E+      M 
Sbjct: 378 HTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQML 437

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLP 217
           + G        N L+ ALCK     +A++  + C       +   ++ ++ G+ +  +L 
Sbjct: 438 QKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLE 497

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  +M  +  +PD+VTY ++VD L K GR+ EA G+V+ M +    PT   Y  ++
Sbjct: 498 SALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVI 557

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAM---YNALIGAFCKANKFKNVYRVLKDMNSK 334
           H Y      E      L      +LA   M   YN ++   C   K    Y +L  +   
Sbjct: 558 HRY-----CEKGNLEDLLNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRT 612

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAY----RVFRRM----IKLCE 371
               +++TC+I++   + RG   +AY    R+FRR     +KLC+
Sbjct: 613 ASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDVKLCQ 657


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 161/317 (50%), Gaps = 3/317 (0%)

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGK 212
           F +++K G   NL   N L+  LCK+ N+++A  +   M +R F+ D  TY+ L+ G  K
Sbjct: 547 FRLLEK-GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK 605

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +  +    ++  EMV  G  PD  TY +++  +C+ G++DEA+ +     S    P  + 
Sbjct: 606 EGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYT 665

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y V++  Y   ++IE+    F E+    +  +  +YN LI A+C+       +++  DM 
Sbjct: 666 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 725

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           SKG+ P + T + +++G+   G  ++A  +   M K     +   YT +I  +C+ G+++
Sbjct: 726 SKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMD 785

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           K   V + M      P+  T++V+I+G    G +  +  LL +M+ KGI P   T+  L 
Sbjct: 786 KVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLT 845

Query: 452 KLLIKEGREDVLKFLQE 468
               KEG+ +  K L E
Sbjct: 846 NGFCKEGKIEEGKLLAE 862



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 194/411 (47%), Gaps = 6/411 (1%)

Query: 56  QSGIRVSPE--IVEDVLEKFRNAGTL-AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ 112
           +SG+ V+    ++     +FRN G   A   F++   +  +  +V+    ++ SL K  +
Sbjct: 236 ESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFP-TVKTCTFLLSSLVKANE 294

Query: 113 YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
            +  + +   MR     +V  F   +  + +  KVE+A+  F  M+K GV+ N+  +N L
Sbjct: 295 LEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNL 354

Query: 173 LSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           +  LCK  N+ +A    + M KD       TYS+L+ G  K      A  + +E ++ G 
Sbjct: 355 IHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF 414

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P+ V Y  ++D  CK G + +AL I   M S    P S   + ++  +    ++E A  
Sbjct: 415 TPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAEC 474

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
              EM   G   +   +  +I   C  ++F++  R L++M  + + PN      ++ GL 
Sbjct: 475 ILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLC 534

Query: 352 GRGETDEAYRV-FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G+  +A  + FR + K   A+  T   +I   C+ G +++A ++ K M  + F+    
Sbjct: 535 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 594

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           T++ LI+G C +G V +   L  +M+++GI P   T+  L   + + G+ D
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 645



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 11/348 (3%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L +  +C   R          A+  F  +   GV   +     LLS+L K+  + K+  +
Sbjct: 246 LLIHVYCTQFRNVG----FRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV 301

Query: 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           F+ M+    PD   +S  +  + K   +  A ++F +M   G +P++VTY  ++  LCK 
Sbjct: 302 FETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKH 361

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +DEA    + M       T   YSVL++      +  +A     E  + G   +  +Y
Sbjct: 362 GNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVY 421

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI- 367
           N LI  +CK     +  R+  DM SKG+ PNS T N I+ G    G+ ++A  +   M+ 
Sbjct: 422 NTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 481

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           +    +   +T +I   C     E A +  + M L+   P+    + L+ GLC +G  SD
Sbjct: 482 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD 541

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475
           +  L   ++EKG   +  T   L   L K G       +QE + LL K
Sbjct: 542 AVELWFRLLEKGFGANLVTTNALIHGLCKTGN------MQEAVRLLKK 583



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 151/314 (48%), Gaps = 5/314 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKY 141
           +F+  EK   +  ++   +++I  L K    Q    L+  M  +  +L+  T+  ++   
Sbjct: 546 WFRLLEK--GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGC 603

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDS 200
            +  KVEE       M K G+  +   +N L+  +C+   + +A  +++  K R  +P+ 
Sbjct: 604 CKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNV 663

Query: 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260
            TY ++++G+ K   +    ++F E++      + V Y  ++   C+ G   EA  +   
Sbjct: 664 YTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDD 723

Query: 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           M S    PT+  YS L+H      R+EDA     EM K G+L +V  Y ALIG +CK  +
Sbjct: 724 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 783

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTM 379
              V  VL++M+S  + PN  T  ++++G    G+   A ++   M+ K    D  TY +
Sbjct: 784 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNV 843

Query: 380 MIKMFCQGGELEKA 393
           +   FC+ G++E+ 
Sbjct: 844 LTNGFCKEGKIEEG 857



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 179/379 (47%), Gaps = 16/379 (4%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEEAVY 152
           Y+++I+   K      M +L +A+R +  +       N  T   I++ + ++ ++E+A  
Sbjct: 421 YNTLIDGYCK------MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAEC 474

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
               M   G + N  AF  ++  LC +     A      M  R + P+    + L+ G  
Sbjct: 475 ILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLC 534

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K+     A E++  +++ G   ++VT   ++  LCK G + EA+ ++K M          
Sbjct: 535 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 594

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ L+     E ++E+      EM K GI  D   YN LI   C+  K      +  + 
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 654

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
            S+ + PN  T  ++++G     + +E  ++F  ++ +  E ++  Y  +I+ +C+ G  
Sbjct: 655 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 714

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +AFK+   M+ K   P+  T+S LI+G+C+ G + D+  L+++M ++G+ P+   +  L
Sbjct: 715 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 774

Query: 451 RKLLIKEGRED-VLKFLQE 468
                K G+ D V+  LQE
Sbjct: 775 IGGYCKLGQMDKVVNVLQE 793



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK---FKNVYRVLKDMNSKGVAPNSRT 342
           I  A+    E+ ++G+   VA  + LI  +C   +   F+N   V + + +KGV P  +T
Sbjct: 224 IASAMADLNEVGESGV--AVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKT 281

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           C  +L+ L+   E +++Y VF  M +    D   ++  I  FC+GG++E A +++  M+ 
Sbjct: 282 CTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEK 341

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
               P++ T++ LI+GLC  G + ++    E M++ G+  +  T+  L   L+K
Sbjct: 342 LGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 395


>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
          Length = 655

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 206/448 (45%), Gaps = 51/448 (11%)

Query: 1   MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLD-TALDQSGI 59
           M+ +   R++    CI  L    +   ST+     K I    LS+P +  + T+ D S +
Sbjct: 236 MLSLISPRHRNSFRCIQTLLYPFTQSFSTKPF---KPIEPEPLSNPIISPNSTSFDHSTV 292

Query: 60  RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           R         L  + N    A  FF W + Q  + H+   Y+ MI+ L K  ++ ++W L
Sbjct: 293 R-------QTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVL 345

Query: 120 VNAMRTKRML--NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           +  M+   +   N  TF  + ++YA    VEEA+  +   +++ + ++  +++ L+ ALC
Sbjct: 346 IQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNL-RDETSYSNLIDALC 404

Query: 178 KSKNVRKAQEIFDCMKDR----FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
           + K+V +A+E+F  +K+     F  D K Y+I+L GW K+                    
Sbjct: 405 EYKHVIEAEELF--LKESKDLVFNDDVKIYNIILRGWFKN-------------------- 442

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
                G++ +  CK+G+   A+ + K M     R     Y+ ++   G+   ++ ++  F
Sbjct: 443 -----GVVEE--CKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVF 495

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            E ++ G   +V  YN +I   C+  + +  Y V   M  KG APN  T +    G I +
Sbjct: 496 REXKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCFF-GCIEK 554

Query: 354 GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
            +  +  R F RMI        DTY M++K F + G L   F VWK M+ +   P    +
Sbjct: 555 PK--QILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAY 612

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           + LI+ L  KG+V  +    E+M+ KG+
Sbjct: 613 NALIDALVQKGMVDLARKYEEEMLAKGL 640



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 21/246 (8%)

Query: 218 RAREIFREMVDTGC--NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSFIYS 274
           RA E F + V T C  N    TY  M+D+L K    D    +++ M +  V  P    + 
Sbjct: 305 RALEFF-DWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFR 363

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV----LKD 330
            +   Y   + +E+A++ +   E+   L D   Y+ LI A C+   +K+V       LK+
Sbjct: 364 FVFKRYAAAHLVEEAMNAYYRTEEFN-LRDETSYSNLIDALCE---YKHVIEAEELFLKE 419

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDE--------AYRVFRRMIKL-CEADADTYTMMI 381
                   + +  NIIL G    G  +E        A ++++ M K     D   Y  +I
Sbjct: 420 SKDLVFNDDVKIYNIILRGWFKNGVVEECKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVI 479

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           +       ++ + +V++  K     P++ T++ +I  LC+ G + ++  + + M EKG  
Sbjct: 480 RAIGLSEGVDFSIRVFREXKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYA 539

Query: 442 PSGETF 447
           P+  T+
Sbjct: 540 PNVITY 545


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 180/385 (46%), Gaps = 25/385 (6%)

Query: 60  RVSPEI--VEDVLE------KFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           RVSP+I     V+       + R AG +A     W         SV  Y+S+I+   K  
Sbjct: 186 RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG-----LAPSVATYNSLIDGYCKKG 240

Query: 112 QYQIMWDLVNAMRTKRMLNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
               M+ +   M  K M+         TF +++  Y +      AV  F  M++ G+  +
Sbjct: 241 GAGNMYHV--DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS 298

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFR 224
           +  +N L+S LC    V +  ++ + M+D  + P+  T+  +L+G+ K   +  A +   
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
            M +    PD+V Y I++D   + G++++A+ + ++M      P    Y+ L+  +    
Sbjct: 359 GMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
               A     EM++ GI ADV  YN LIGA C   + +   ++L +M+  G+ PN  T N
Sbjct: 419 DWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYN 478

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKL 402
            I+ G   +G    AY +  RM K C   A+  TY + IK FCQ G++++A  +   M  
Sbjct: 479 TIIQGFCDKGNIKSAYEIRTRMEK-CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSD 427
           K  +P+  T+  +  G+ +KG   D
Sbjct: 538 KCLVPNGITYETIKEGMMEKGYTPD 562



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYT-- 153
           +  ++++I  L +I Q +   D+   ++   +  +V T+  ++  Y +        +   
Sbjct: 191 IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDM 250

Query: 154 -FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWG 211
               M + G++     F  L++  CK+ N   A  +F+ MK + I  S  TY+ L+ G  
Sbjct: 251 LLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLC 310

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
            +  +    ++  EM D G +P+ +T+G ++   CK G + +A   +  M      P   
Sbjct: 311 SEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           IY++L+  Y    ++EDA+     M K GI  +V  YN LI  F ++  +++   +L +M
Sbjct: 371 IYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGEL 390
             KG+  +  T N+++  L  +GE  +A ++   M ++  E +  TY  +I+ FC  G +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           + A+++   M+  R   ++ T++V I   C  G + ++  LL +M++K + P+G T+  +
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550

Query: 451 RKLLIKEG 458
           ++ ++++G
Sbjct: 551 KEGMMEKG 558



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 161/347 (46%), Gaps = 6/347 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKY 141
           F    E    +  S  + ++++  L   ++  +      +A+R +   ++ TF  ++   
Sbjct: 142 FLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGL 201

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK---SKNVRKAQEIFDCMKDRFI- 197
            R+ ++ +A      ++ +G+  ++A +N L+   CK   + N+     +   M +  I 
Sbjct: 202 CRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGIS 261

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P + T+ +L+ G+ K+ N   A  +F EM   G    +VTY  ++  LC  G+V+E + +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           ++ M+     P    +  ++  +  +  + DA D    M +  +  DV +Y  LI  + +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRR 381

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
             K ++   V + M  KG++PN  T N ++ G    G+   A  +   M  K  EAD  T
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           Y ++I   C  GE+ KA K+   M      P+  T++ +I G CDKG
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKG 488



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 43/340 (12%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           L+ AL ++    +A + F    +   R  P + + + LL G      +  A + FR  + 
Sbjct: 125 LVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALR 184

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVK---------------SMDSTVCR------ 267
              +PDI T+  ++  LC+ G++ +A  + K               S+    C+      
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 268 -----------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
                            PT+  + VL++ Y   +    AV  F EM++ GI A V  YN+
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KL 369
           LI   C   K +   +++++M   G++PN  T   +L G   +G   +A      M  + 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
            E D   YT++I  + + G++E A  V + M  K   P++ T++ LI G    G    + 
Sbjct: 365 VEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            LL++M EKGI     T+  L   L  +G     +K L E
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 267 RP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           RP TS + ++L    G + R++ A   F    +  +  D+  +N +I   C+  + +   
Sbjct: 153 RPSTSSVNALLAGLVGAK-RVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
            V KD+ + G+AP+  T N +++G   +G     Y V                M++K   
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV---------------DMLLKEMV 256

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           + G                  P+  TF VLING C     + +  + E+M ++GI  S  
Sbjct: 257 EAG----------------ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVV 300

Query: 446 TFGKLRKLLIKEGR-EDVLKFLQEKMNL 472
           T+  L   L  EG+ E+ +K ++E  +L
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDL 328



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 96/208 (46%), Gaps = 5/208 (2%)

Query: 61  VSPEIV--EDVLEKFRNAGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           V P++V    +++ +R  G +      K A  ++    +V  Y+ +I   ++   ++   
Sbjct: 365 VEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
            L++ M+ K +  +V T+ +++       +V +AV   + M + G+  N   +N ++   
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484

Query: 177 CKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
           C   N++ A EI   M K R   +  TY++ ++ + +   +  A ++  EM+D    P+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +TY  + + + + G   +  G   S  S
Sbjct: 545 ITYETIKEGMMEKGYTPDIRGCTVSQAS 572


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 190/398 (47%), Gaps = 36/398 (9%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138
           +A  FF WA++Q  Y H              IR+                   E F  +M
Sbjct: 210 VALRFFYWADRQWRYRHD------------PIRR------------------PEAFGYVM 239

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
             Y+R  K+  A+    +MQK G+  +L+  N  +  L     + KA    + M+   I 
Sbjct: 240 VSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIE 299

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  TY+ L++G+     L  A E+  EM   GC+PD ++Y  ++  LCK  R+ E   +
Sbjct: 300 PNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLL 359

Query: 258 VKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           ++ M  DS +  P    Y+  VH        ++A++   E E+     D   Y+A++ +F
Sbjct: 360 MEKMLKDSNLL-PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSF 418

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
           C+  +      ++ +M SKG  P+  T   ++NGL    + D+A ++ R+M K  C+ + 
Sbjct: 419 CREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNT 478

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            +YT ++   C+ G   +A ++    +   +IP+  T+SVL++G   +G  S++C L+ +
Sbjct: 479 VSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVRE 538

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLK-FLQEKMN 471
           MI+KG  P+      L + L +E + D  K F+++ +N
Sbjct: 539 MIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLN 576



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 174/381 (45%), Gaps = 39/381 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  +++ Y  + ++E+A+     M   G + +  ++  ++  LCK K +++ + + 
Sbjct: 301 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 360

Query: 190 DCM-KD------------------------------------RFIPDSKTYSILLEGWGK 212
           + M KD                                    RF  D   YS ++  + +
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           +  + +A+EI  EM   GC PD+VTY  +++ LC+  +VD+A  +++ M    C+P +  
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 480

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++         +A +     E++  + +   Y+ L+  F +  K      ++++M 
Sbjct: 481 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 540

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            KG  P     N+++  L    + DEA R   + +   C  +   +T +I  FCQ  +LE
Sbjct: 541 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 600

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +   M L    P + T++ +I+ L  KG + ++  L   M+  G+ P+  T+  + 
Sbjct: 601 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVI 660

Query: 452 KLLIKEGR-EDVLKFLQEKMN 471
               + GR ED+LK L++ ++
Sbjct: 661 HQYCRMGRVEDLLKLLEKMLS 681



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 192/399 (48%), Gaps = 11/399 (2%)

Query: 77  GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFC 135
           G  A  F + AE+++     V  Y +++ S  +  +     ++VN M +K  + +V T+ 
Sbjct: 389 GDEALEFLREAEERRFRVDKV-GYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYT 447

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKD 194
            ++    + +KV++A      M K+G   N  ++  LL+ LCK+ N  +A+E+ +   +D
Sbjct: 448 SVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEED 507

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            +IP++ TYS+L+ G+ ++     A ++ REM+  G  P  V   +++  LC+  +VDEA
Sbjct: 508 WWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA 567

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
              ++   +  C      ++ ++H +  ++ +E A+    +M  +    DV  Y  +I A
Sbjct: 568 KRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDA 627

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
             K  + +   ++   M   G+ P   T   +++     G  ++  ++  +M+   E   
Sbjct: 628 LGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT 687

Query: 375 DTYTMMIKMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             Y  +I+  C  G LE+A+K+  K ++    I + +T  +LI     KGI   S  +  
Sbjct: 688 -AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDA-NTCHMLIESYLSKGIPLMSYNVAC 745

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGRED-----VLKFLQ 467
            M  + + P  +   K+ K L+ EG+ +     +L+F++
Sbjct: 746 RMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVE 784


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 185/377 (49%), Gaps = 3/377 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I  L K  +Y     +++ M    M  +  T+ I++ +  R   + +A   F+
Sbjct: 167 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 226

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   GV  +L +F+ L+  L K+  + +A + F  MK+    PD+  Y+IL+ G+ ++ 
Sbjct: 227 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 286

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            +  A ++  EM++ GC  D+VTY  +++ LCK   + EA  +   M      P  + ++
Sbjct: 287 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 346

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ Y  +  +  AV  F  M +  +  DV  YN LI  FCK ++ + V  +  DM S+
Sbjct: 347 TLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 406

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
            + PN  +  I++NG    G   EA+R++  M+ K  EA   T   ++K +C+ G   KA
Sbjct: 407 RIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKA 466

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            +    M LK  +P   T++ LING   +  +  +  L+  M   G+ P   T+  +   
Sbjct: 467 DEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 526

Query: 454 LIKEGREDVLKFLQEKM 470
             ++GR    + +  KM
Sbjct: 527 FSRQGRMQEAELIMLKM 543



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 9/350 (2%)

Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCI-------IMRKYARVQKVEEAVYTFNVMQKYGV 162
           +R Y     L       R+L  +  C+       ++    +V  V+ A   +  + + GV
Sbjct: 34  VRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGV 93

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRARE 221
             N+   N +++ALCK++ +   +     M+++ + PD  TY+ L+  + +   L  A E
Sbjct: 94  QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFE 153

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +   M   G  P + TY  +++ LCK G+   A G++  M      P +  Y++L+    
Sbjct: 154 LMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECC 213

Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
             + + DA   F EM   G++ D+  ++ALIG   K        +  +DM + G+AP++ 
Sbjct: 214 RNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNV 273

Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
              I++ G    G   EA +V   M++  C  D  TY  ++   C+   L +A +++  M
Sbjct: 274 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 333

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
             +   P  +TF+ LING    G ++ +  L E MI++ ++P   T+  L
Sbjct: 334 TERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTL 383



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 153/311 (49%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  + R   + EA+   + M + G   ++  +N +L+ LCK K + +A E+F  M 
Sbjct: 275 YTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMT 334

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R + PD  T++ L+ G+ KD N+ +A  +F  M+     PD+VTY  ++D  CK   ++
Sbjct: 335 ERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME 394

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +   +   M S    P    Y +L++ Y     + +A   + EM + G  A +   N ++
Sbjct: 395 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 454

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
             +C+A         L +M  KG+ P+  T N ++NG I     D A+ +  +M      
Sbjct: 455 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLL 514

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY +++  F + G +++A  +   M  +   P   T++ LING   +  + ++  +
Sbjct: 515 PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 574

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 575 HDEMLQRGFVP 585



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 8/285 (2%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           +L+V T+  I+    + + + EA   F  M + GV  +   F  L++   K  N+ KA  
Sbjct: 304 VLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVT 363

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +F+ M  R + PD  TY+ L++G+ K   + +  E++ +M+     P+ ++YGI+++  C
Sbjct: 364 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 423

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV--DTFL-EMEKNGILA 303
             G V EA  +   M       T    + +V  Y    R  +AV  D FL  M   GI+ 
Sbjct: 424 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVP 480

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           D   YN LI  F K       + ++  M + G+ P+  T N+ILNG   +G   EA  + 
Sbjct: 481 DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIM 540

Query: 364 RRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            +MI +    D  TYT +I        L++AF+V   M  + F+P
Sbjct: 541 LKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 70/314 (22%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N   F +++R Y + +K+ E    F V++  G+  ++ A N LL  L K           
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKV---------- 75

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
                              GW     +  A EI++E+V +G   ++ T  IM++ LCK  
Sbjct: 76  -------------------GW-----VDLAWEIYQEVVRSGVQVNVYTLNIMINALCK-- 109

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
                                              +IE+      +ME+ G+  DV  YN
Sbjct: 110 ---------------------------------NQKIENTKSFLSDMEEKGVFPDVVTYN 136

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI A+C+    +  + ++  M+ KG+ P   T N I+NGL   G+   A  V   M+K+
Sbjct: 137 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 196

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
               D  TY +++   C+   +  A +++  M  +  +P + +FS LI  L   G +  +
Sbjct: 197 GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQA 256

Query: 429 CVLLEDMIEKGIRP 442
                DM   G+ P
Sbjct: 257 LKYFRDMKNAGLAP 270



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 37/282 (13%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y++++  L K +      +L   M  + +  +  TF  ++  Y++   + +AV  F 
Sbjct: 307 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 366

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
           +M +  +  ++  +N L+   CK   + K  E++ D +  R  P+  +Y IL+ G+    
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 426

Query: 215 NLPRAREIFREMVDTG-------CN----------------------------PDIVTYG 239
            +  A  ++ EMV+ G       CN                            PD +TY 
Sbjct: 427 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 486

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            +++   K   +D A  +V  M+++   P    Y+V+++ +  + R+++A    L+M + 
Sbjct: 487 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIER 546

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
           G+  D + Y +LI      N  K  +RV  +M  +G  P+ +
Sbjct: 547 GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDK 588



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
           C     ++ +LV TY    ++ +  + F  ++  G+   +   N+L+G   K       +
Sbjct: 23  CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 82

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMF 384
            + +++   GV  N  T NI++N L    + +        M  K    D  TY  +I  +
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 142

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C+ G LE+AF++   M  K   P + T++ +INGLC  G    +  +L++M++ G+ P  
Sbjct: 143 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 202

Query: 445 ETFGKL 450
            T+  L
Sbjct: 203 ATYNIL 208



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           +++ L+  + +A K +      + + SKG+  +   CN +L GL+  G  D A+ +++ +
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 367 IKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           ++   + +  T  +MI   C+  ++E        M+ K   P + T++ LIN  C +G++
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 148

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            ++  L++ M  KG++P   T+  +   L K G+
Sbjct: 149 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 164/334 (49%), Gaps = 9/334 (2%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRF 196
           M+ Y+ V  +         M  +G+  N+   N L+++ C  + +  A  +    +K   
Sbjct: 81  MKHYSTVLSLSHQ------MDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGH 134

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
            P+  T++ L+ G   +  +     +F +M+  G  P++VTYG +++ LCK G    A+ 
Sbjct: 135 QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIR 194

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +++SM+   C+P   +Y+ ++ +   + ++  A + F EM   GI   +  YN+LI A C
Sbjct: 195 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 254

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD 375
              ++K+V  +L +M +  + PN    + +++ L   G+  EA+ V   MIK   E +  
Sbjct: 255 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 314

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY  ++   C   E+++A KV+  M  K F P + ++S LING C    +  +  L E+M
Sbjct: 315 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 374

Query: 436 IEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
             K + P+  T+  L   L   GR +D +    E
Sbjct: 375 CRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHE 408



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 228/517 (44%), Gaps = 52/517 (10%)

Query: 3   KVYHSR----NKMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALD 55
             +HS+    N +     SF R  +   P + A D  K   SI+K+   S  + L   +D
Sbjct: 37  NTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIA-DFTKLLISITKMKHYSTVLSLSHQMD 95

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIR 111
             GI  +   +  ++  F +   L F F   A+  +  ++ ++  ++++I  L    KI 
Sbjct: 96  SFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIG 155

Query: 112 QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +   ++D    +      NV T+  ++    +V     A+     M++     ++  +  
Sbjct: 156 EVLHLFD--KMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTS 213

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           ++ +LCK + V +A  +F  M  + I P   TY+ L+              +  EMV++ 
Sbjct: 214 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P++V +  +VD LCK G+V EA  +V  M      P    Y+ L+  + + + +++AV
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F  M   G   DV  Y+ LI  +CK  + +    + ++M  K + PN+ T + +++GL
Sbjct: 334 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 393

Query: 351 IGRGETDEAYRVFRRMIK----------------LC--------------------EADA 374
              G   +A  +F  M+                 LC                    + D 
Sbjct: 394 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 453

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             YT++I   C+ GELE A  ++  +  K   P++ T++++INGLC +G+++++  L  +
Sbjct: 454 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 513

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQEKM 470
           M  KG  P+G T+  + +  ++       ++ LQE +
Sbjct: 514 MKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEML 550



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 186/387 (48%), Gaps = 8/387 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           +Q N +  V  Y S+I+SL K RQ    ++L + M  + +  ++ T+  ++     + + 
Sbjct: 200 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 259

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           +      N M    +  N+  F+ ++ ALCK   V +A ++ D M  R + P+  TY+ L
Sbjct: 260 KHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 319

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G      +  A ++F  MV  G  PD+V+Y  +++  CK  R+++A+ + + M     
Sbjct: 320 MDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 379

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P +  YS L+H      R++DA+  F EM   G + D   Y  L+   CK  +      
Sbjct: 380 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIA 439

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
           +LK +    + P+ +   I+++G+   GE + A  +F  +  K    +  TYT+MI   C
Sbjct: 440 LLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC 499

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           Q G L +A K++  MK K + P+  T++++  G            LL++M+ +G      
Sbjct: 500 QQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVS 559

Query: 446 TFGKLRKLLIKEGREDVLK-----FLQ 467
           T   L ++L  +G +  +K     FLQ
Sbjct: 560 TSTVLVEMLSDDGLDQSVKQILSEFLQ 586


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 176/342 (51%), Gaps = 3/342 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           KQ+N   ++  Y+S+I+ L K+ Q++ +  L++ M    +  NV TF I++    +  KV
Sbjct: 230 KQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKV 289

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           E+A      M + GV  ++  ++ ++   C    V +A+ +F+ ++D+ I P+  +YSIL
Sbjct: 290 EDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSIL 349

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ K  NL +A ++F E+   G  PD VTY  ++  L + GR+ +A  I   M     
Sbjct: 350 INGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGP 409

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P   ++S L+  Y     +E+A+  F ++E+N    +++ Y  +I   CK ++ +  + 
Sbjct: 410 TPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHA 469

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           + + + S G+ P+ RT N+++ G    G  DE   + R+M    C A+  TY ++++ F 
Sbjct: 470 IFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFF 529

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           +  ++ +     K M  + F     T  VLIN L +   + D
Sbjct: 530 RSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVD 571



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 189/398 (47%), Gaps = 4/398 (1%)

Query: 75  NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVET 133
           N  T A   FK   +++  E +   Y +++  L+K    +    L+  M       +V T
Sbjct: 146 NKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRT 205

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++    +   ++ A+   N M++  +  N+  +N L+  LCK     K + +   M 
Sbjct: 206 YSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMV 265

Query: 194 DRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +  I P+  T+SIL++G  K+  +  A E+ R M++ G  PDI+TY  ++D  C  G+VD
Sbjct: 266 NLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVD 325

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A  +   +     +P  F YS+L++ Y  +  +  A+  F E+ + G+  D   Y+ ++
Sbjct: 326 RARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTIL 385

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE- 371
               +  +  +  ++  +M   G  P+    + +L G    G  +EA  +F ++ +  E 
Sbjct: 386 HGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNRED 445

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +   YT++I   C+   + +A  +++ +     IP + T++V+I G C +G+  +   +
Sbjct: 446 TNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGI 505

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           L  M + G   +  T+  + +   +  +  +++ F++E
Sbjct: 506 LRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKE 543



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 184/361 (50%), Gaps = 4/361 (1%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R K + +V  F  + +    ++     V  F  M+  G+  + +  N + ++ C    +
Sbjct: 54  VRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRI 113

Query: 183 RKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNPDIVTYGI 240
             A  +        IP +  T++ LL G   +  +  A  +F+++V +  C P+ V YG 
Sbjct: 114 DCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGT 173

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           +++ L K G  ++ L +++ M+    +P    YS+++     +  ++ A++   EM++  
Sbjct: 174 VMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKN 233

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           I  ++  YN+LI   CK  +++ V  +L +M +  + PN  T +I+++GL   G+ ++A 
Sbjct: 234 IPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDAD 293

Query: 361 RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            V R MI K  E D  TY+ ++  +C  G++++A +V+  ++ K   P++ ++S+LING 
Sbjct: 294 EVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGY 353

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPL 478
           C K  ++ +  L  ++ +KG++P   T+  +   LI+ GR  D  K   E + +     +
Sbjct: 354 CKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDI 413

Query: 479 C 479
           C
Sbjct: 414 C 414



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 172/336 (51%), Gaps = 2/336 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           +M   ++    E+ +    +M++     ++  ++ ++ ALCK  N+  A  + + MK + 
Sbjct: 174 VMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKN 233

Query: 197 IPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           IP +  TY+ L++G  K     + + +  EMV+   NP++ T+ I++D LCK G+V++A 
Sbjct: 234 IPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDAD 293

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ M      P    YS ++  Y +  +++ A   F  +   GI  ++  Y+ LI  +
Sbjct: 294 EVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGY 353

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DA 374
           CK        ++  +++ KG+ P++ T + IL+GLI  G   +A ++F  M+++    D 
Sbjct: 354 CKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDI 413

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             ++ ++  + + G +E+A  ++  ++  R   ++  ++V+INGLC    V ++  + E 
Sbjct: 414 CLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEK 473

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +   G+ P   T+  +     +EG  D +K +  KM
Sbjct: 474 LPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKM 509



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 6/260 (2%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +F  MV     P ++ +  +   +         + + + M       +  I ++
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM-NSK 334
           + ++Y + +RI+ A        K GI  +V  +N L+G     NK  +   + K +   K
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
              PN      ++NGL  RG T++   + R M +   + D  TY+++I   C+   L+ A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             +   MK K   P++ T++ LI+GLC  G       LL +M+   I P+  TF  L   
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282

Query: 454 LIKEGR----EDVLKFLQEK 469
           L KEG+    ++V++ + EK
Sbjct: 283 LCKEGKVEDADEVMRHMIEK 302


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 207/469 (44%), Gaps = 71/469 (15%)

Query: 47  KVVLDTALDQSGIRVSPEIVEDVLEKFR--------NAGTLAFCFFK-WAEKQQNYEHSV 97
            +VL+   DQ  +  +  ++ D L  F         NA     C  K W   Q+  E  V
Sbjct: 196 NLVLNAICDQGSVDEALHLLRD-LPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV 254

Query: 98  R--------AYHSMIESLAKI----RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145
           R         ++++I  L +     R ++++  +V    T    ++  +  I+    +  
Sbjct: 255 RMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP---DIRMYATIIDGICKEG 311

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYS 204
            +E A    N M  YG+  N+  +N LL  LC ++   + +E+   M D+  P D  T++
Sbjct: 312 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           IL++ + ++  + R  E+  +M++ GC PD++TY  +++  CK G +DEA+ ++KSM + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
            C+P +  Y++++       R  DA D   +M + G   +   +N LI   CK    +  
Sbjct: 432 GCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 491

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---------------- 368
             +LK M   G +P+  + + +++GL   G+TDEA  +   M+                 
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 551

Query: 369 --------------------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                                  +DA  Y  +I   C+ GE E+A +   YM     +P+
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             T+++LI GL  +G V ++  +L ++  K         G LRK L+K 
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSK---------GALRKHLMKH 651



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 178/398 (44%), Gaps = 38/398 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           YH ++E+  +   ++    ++  +  +   L+V    +++        V+EA++    + 
Sbjct: 160 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP 219

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
            +G   ++ ++N +L  LC +K     QE+ + M +    P+  T++ L+    ++    
Sbjct: 220 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 279

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           R  E+  +MV+ GC PDI  Y  ++D +CK G ++ A  I+  M S   +P    Y+ L+
Sbjct: 280 RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 339

Query: 278 H----------------------------TYGV------ENRIEDAVDTFLE-MEKNGIL 302
                                        T+ +      +N + D V   LE M + G +
Sbjct: 340 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCM 399

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            DV  Y  +I  FCK         +LK M + G  PN+ +  I+L GL       +A  +
Sbjct: 400 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDL 459

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
             +MI+  C  +  T+  +I   C+ G +E+A ++ K M +    P + ++S +I+GL  
Sbjct: 460 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            G   ++  LL  M+ KG+ P+   +  +   L +EGR
Sbjct: 520 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGR 557



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 148/356 (41%), Gaps = 40/356 (11%)

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPD 199
           Y R  ++E A     +     V  N   +  ++ ALC    +  A  + D M  R   P 
Sbjct: 100 YCRAGQLESA---RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPI 156

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
              Y ++LE   +      A  +  ++   GC  D+    ++++ +C  G VDEAL +++
Sbjct: 157 PPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLR 216

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            + S  C P    Y+ ++    +  R     +   EM +     ++  +N LI   C+  
Sbjct: 217 DLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNG 276

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI------------ 367
            F+ V+ VL  M   G  P+ R    I++G+   G  + A+ +  RM             
Sbjct: 277 LFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYN 336

Query: 368 ------------------------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
                                   K C  D  T+ +++  FCQ G +++  ++ + M  +
Sbjct: 337 TLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLER 396

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +P + T++ +ING C +G++ ++ +LL+ M   G +P+  ++  + K L    R
Sbjct: 397 GCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAER 452



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 4/234 (1%)

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           Y  MV   C+AG+++ A  +  ++      P ++ Y  +V       RI DA+    EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVP---PNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
           + G      MY+ ++ A C+   F++  RVL+D++++G A +   CN++LN +  +G  D
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA  + R +    CE D  +Y  ++K  C         ++ + M      P++ TF+ LI
Sbjct: 210 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           + LC  G+      +L  M+E G  P    +  +   + KEG  +V   +  +M
Sbjct: 270 SYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y + IE+  K R +     +   MR +   +N  T+ +++    R   VEEA     
Sbjct: 243 VYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKE 302

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            M  YG++ +   +  L++ LCK   +++A+ + D M      P+   Y  L++G+ K+ 
Sbjct: 303 EMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEG 362

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               A +I +EM+  G  P+ + Y  ++  LCK G++  A  ++K M     RP +F Y+
Sbjct: 363 KTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYN 422

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  +  ++  + A +   EM  +GIL +V  Y  +I   C+  + K    +L++M S+
Sbjct: 423 PLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISE 482

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+ PN+     ++ G    G    A     +M K     D   Y  +IK     G +E+A
Sbjct: 483 GLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEA 542

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            + +  ++ +  +P   T+S LI+G C  G +  +  LL  M+  G++P+ +T+  L
Sbjct: 543 EEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDL 599



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 162/325 (49%), Gaps = 2/325 (0%)

Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
           +++  Y +   V  A     +M   G+       NGLL  L ++  +    ++   M+  
Sbjct: 178 VLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGA 237

Query: 196 FI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
            I PD  TYS  +E   K  +   A+++F EM    C  + VTY +M+  LC++G V+EA
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
            G  + M      P +F Y  L++     +R+++A     EM  +G+  ++ +Y  L+  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEAD 373
           F K  K    + +LK+M S GV PN    + ++ GL   G+   A ++ + MIK+    D
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY  +++   Q  + + AF++   M+    +P+++++ ++INGLC  G   ++  LLE
Sbjct: 418 TFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEG 458
           +MI +G++P+   +  L     KEG
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEG 502



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 179/375 (47%), Gaps = 18/375 (4%)

Query: 68  DVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127
           ++L + RN+G L                +V +Y  MI  L +  + +   +L+  M ++ 
Sbjct: 439 ELLNEMRNSGILP---------------NVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 128 M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186
           +  N   +  ++  +++   +  A      M K  V  +L  +N L+  L     + +A+
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 187 EIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
           E +  ++ R  +PD  TYS L+ G+ K  NL +A ++ R+M+++G  P+  TY  +++  
Sbjct: 544 EYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGY 603

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
            K+   ++   I++SM  +  +P + IY +++        +E A     E+EKNG++ D+
Sbjct: 604 FKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDL 663

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
            +Y++LI   CK    +    +L +M  +G+ P     N +++G    G+   A  VF  
Sbjct: 664 HIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDS 723

Query: 366 MI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           ++ K    +  TYT +I   C+ G++  AF ++K M  +   P    ++VL  G  D   
Sbjct: 724 ILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAAD 783

Query: 425 VSDSCVLLEDMIEKG 439
           +  +  L E+M  +G
Sbjct: 784 LEQALFLTEEMFNRG 798



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 186/400 (46%), Gaps = 40/400 (10%)

Query: 84  FKWAEKQQNYEHSVRA--YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRK 140
           F + E+  +Y  S  A  Y +++  L K  + +    L++ M    +  N+  +  ++  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPD 199
           + +  K  EA      M   GV  N   ++ L+  LCK   + +A ++  + +K    PD
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           + TY+ L++G  +  +   A E+  EM ++G  P++ +YGIM++ LC+ G   EA  +++
Sbjct: 418 TFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVE-----------------------------------N 284
            M S   +P +F+Y+ L+  +  E                                    
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVG 537

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R+E+A + + +++K G++ D   Y+ LI  +CK    +   ++L+ M + G+ PN+ T  
Sbjct: 538 RMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYT 597

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +L G     + ++   + + M+   +  D   Y ++I+   +   +E AF V   ++  
Sbjct: 598 DLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN 657

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
             +P +H +S LI+GLC    +  +  LL++M ++G+ P 
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPG 697



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 166/376 (44%), Gaps = 58/376 (15%)

Query: 125 TKRMLNVETFCI--IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           TK  ++ + FC   +++  + V ++EEA   +  +QK G+  +   ++GL+   CK+ N+
Sbjct: 515 TKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNL 574

Query: 183 RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            KA ++   M +  + P++ TY+ LLEG+ K  +  +   I + M+ +G  PD   YGI+
Sbjct: 575 EKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIV 634

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +  L ++  ++ A  ++  ++     P   IYS L+        +E AV    EM K G+
Sbjct: 635 IRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGL 694

Query: 302 LADVAMYNALIGAFCKA-------NKFKNV----------------------------YR 326
              +  YNALI  FC++       N F ++                            + 
Sbjct: 695 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFD 754

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386
           + K+M  +G+AP++   N++  G     + ++A  +   M     A+   +  ++  FC+
Sbjct: 755 LYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCK 814

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS------------------ 428
            G+L++  K+   M  +  +P+  T   +++     G + ++                  
Sbjct: 815 RGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATD 874

Query: 429 --CVLLEDMIEKGIRP 442
              +L  DMI KG+ P
Sbjct: 875 RFSLLFTDMINKGLIP 890



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 1/229 (0%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P      ++VD   K G V  A  +V  M      PT    + L+      + +E    
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWK 229

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
               ME  GIL DV  Y+  I A CKA  F    +V ++M  +  A N  T N++++GL 
Sbjct: 230 LKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLC 289

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G  +EA+     M+      DA TY  ++   C+G  L++A  +   M      P++ 
Sbjct: 290 RSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIV 349

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            +  L++G   +G  +++  +L++MI  G++P+   +  L + L K G+
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQ 398



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 21/244 (8%)

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P    +  +   LC A    +A G++  M      P   + S+       ++R      +
Sbjct: 113 PSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLVLASIQRAIQDTDHRSRSPSPS 172

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
                        A+ + L+  + K    +N  +V+  M   G+AP  R CN +L  L+ 
Sbjct: 173 ------------TAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLL- 219

Query: 353 RGETDEAYRVFRRMIKLCEA-----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
                +A  +  ++    E      D  TY+  I+  C+  + + A KV++ M+ +    
Sbjct: 220 ---RADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAM 276

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           +  T++V+I+GLC  G V ++    E+M++ G+ P   T+G L   L K  R    K L 
Sbjct: 277 NEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALL 336

Query: 468 EKMN 471
           ++M+
Sbjct: 337 DEMS 340


>gi|242074540|ref|XP_002447206.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
 gi|241938389|gb|EES11534.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
          Length = 446

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 5/308 (1%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDCMKDR 195
           ++ + A    V++A+  F+        ++ A+F+ L+ ALC  + V +A  + F      
Sbjct: 117 LLNRLAAANLVDDALRAFDSTAASIGLRDEASFHLLVDALCDHRRVDEADHLCFGKDPPP 176

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F P +KT+++LL GW K     R R+++ +M   G   D+ +Y I +D L K+G+  +  
Sbjct: 177 FPPGTKTHNLLLRGWAKTRAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKTF 236

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + K M     R  +  Y+  +H  G+   ++ AV  + +M   G   + A YN ++  F
Sbjct: 237 KVFKEMKQKGVRIDTVAYNTAIHAVGLAQGVDSAVRLYRQMVDAGCKPNTATYNGIVKLF 296

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK  +FK  Y  ++ M+  G  P+  T +     L       E   +F +M+ + C+   
Sbjct: 297 CKEGRFKEGYAFVQQMHKTGCKPDVLTYHCFFQFL---SRPQEVLGLFEKMLERGCQPRM 353

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           DTY M+IK F + G L   F VWK M+ +   P    ++ LI+ L  KG+V  +    E+
Sbjct: 354 DTYVMLIKRFGRWGFLRPVFIVWKAMEEQGLSPDAFAYNALIDALLQKGMVDLARKYDEE 413

Query: 435 MIEKGIRP 442
           M+ KG+ P
Sbjct: 414 MLAKGLSP 421



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 33/245 (13%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
             +T  +++R +A+ +        +  M + GV ++L +++  + AL KS    K  ++F
Sbjct: 180 GTKTHNLLLRGWAKTRAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKTFKVF 239

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK + +  D+  Y+  +   G    +  A  ++R+MVD GC P+  TY  +V + CK 
Sbjct: 240 KEMKQKGVRIDTVAYNTAIHAVGLAQGVDSAVRLYRQMVDAGCKPNTATYNGIVKLFCKE 299

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYS--------------------------------VL 276
           GR  E    V+ M  T C+P    Y                                 +L
Sbjct: 300 GRFKEGYAFVQQMHKTGCKPDVLTYHCFFQFLSRPQEVLGLFEKMLERGCQPRMDTYVML 359

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +G    +      +  ME+ G+  D   YNALI A  +        +  ++M +KG+
Sbjct: 360 IKRFGRWGFLRPVFIVWKAMEEQGLSPDAFAYNALIDALLQKGMVDLARKYDEEMLAKGL 419

Query: 337 APNSR 341
           +P  R
Sbjct: 420 SPKPR 424



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 116/270 (42%), Gaps = 33/270 (12%)

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D  ++ ++VD LC   RVDEA  +    D     P +  +++L+  +            +
Sbjct: 145 DEASFHLLVDALCDHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKTRAWARLRQLW 204

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M++ G+  D+  Y+  + A  K+ K    ++V K+M  KGV  ++   N  ++ +   
Sbjct: 205 FDMDRRGVAKDLHSYSIYMDALAKSGKPWKTFKVFKEMKQKGVRIDTVAYNTAIHAVGLA 264

Query: 354 GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK-------------VWKY 399
              D A R++R+M+   C+ +  TY  ++K+FC+ G  ++ +              V  Y
Sbjct: 265 QGVDSAVRLYRQMVDAGCKPNTATYNGIVKLFCKEGRFKEGYAFVQQMHKTGCKPDVLTY 324

Query: 400 MKLKRFI-------------------PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
               +F+                   P M T+ +LI      G +    ++ + M E+G+
Sbjct: 325 HCFFQFLSRPQEVLGLFEKMLERGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEEQGL 384

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P    +  L   L+++G  D+ +   E+M
Sbjct: 385 SPDAFAYNALIDALLQKGMVDLARKYDEEM 414


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 181/371 (48%), Gaps = 10/371 (2%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           G   S ++   V+  +R  G    A   F +  K+   + SV+ Y+ ++++L    + Q+
Sbjct: 106 GFHCSEDLFISVISVYRQVGLAERAVEMF-YRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164

Query: 116 MWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           ++ +   M R     NV T+ ++++   +  KV+ A      M   G   +  ++  ++S
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
           ++C+   V++ +E    + +RF P    Y+ L+ G  K+ +   A E+ REMV+ G +P+
Sbjct: 225 SMCEVGLVKEGRE----LAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPN 280

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           +++Y  +++VLC +G+++ A   +  M    C P  +  S LV    +     DA+D + 
Sbjct: 281 VISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWN 340

Query: 295 EMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           +M +  G+  +V  YN L+  FC          V   M   G +PN RT   ++NG   R
Sbjct: 341 QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKR 400

Query: 354 GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           G  D A  ++ +M+   C  +   YT M++  C+  + ++A  + + M  +   PS+ TF
Sbjct: 401 GSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTF 460

Query: 413 SVLINGLCDKG 423
           +  I GLCD G
Sbjct: 461 NAFIKGLCDAG 471



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 198/422 (46%), Gaps = 16/422 (3%)

Query: 49  VLDTALDQSGIRV-SPEIVE----DVLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYH 101
           VL+T L+ + +   SP   E    DV+++ R      LA  FFK       ++H+   + 
Sbjct: 21  VLNTNLNVNHLLTESPNHAEIKELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFE 80

Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKY 160
            MI  LA   Q   +  L+  M+ +     E  F  ++  Y +V   E AV  F  ++++
Sbjct: 81  VMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEF 140

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219
           G   ++  +N +L  L     ++    ++ D  +D F P+  TY++LL+   K+  +  A
Sbjct: 141 GCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGA 200

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279
           +++  EM + GC PD V+Y  ++  +C+ G V E   + +  +     P   +Y+ L++ 
Sbjct: 201 KKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFE-----PVVSVYNALING 255

Query: 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
              E+  + A +   EM + GI  +V  Y+ LI   C + + +  +  L  M  +G  PN
Sbjct: 256 LCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPN 315

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVW 397
             T + ++ G   RG T +A  ++ +MI+    + +   Y  +++ FC  G + KA  V+
Sbjct: 316 IYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVF 375

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
            +M+     P++ T+  LING   +G +  +  +   M+  G  P+   +  + + L + 
Sbjct: 376 SHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRH 435

Query: 458 GR 459
            +
Sbjct: 436 SK 437



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 189/410 (46%), Gaps = 42/410 (10%)

Query: 88  EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQK 146
           E  + +E  V  Y+++I  L K   Y+  ++L+  M  K +  NV ++  ++       +
Sbjct: 237 ELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQ 296

Query: 147 VEEA---------------VYTFNVMQK---------------------YGVTQNLAAFN 170
           +E A               +YT + + K                     +G+  N+ A+N
Sbjct: 297 IELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYN 356

Query: 171 GLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+   C   N+ KA  +F  M++    P+ +TY  L+ G+ K  +L  A  I+ +M+ +
Sbjct: 357 TLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTS 416

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC P++V Y  MV+ LC+  +  EA  +++ M    C P+   ++  +       R++ A
Sbjct: 417 GCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWA 476

Query: 290 VDTFLEMEK-NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
              F +ME+ +    ++  YN L+    KAN+ +  Y + +++  +GV  +S T N +L+
Sbjct: 477 EKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLH 536

Query: 349 GLIGRGETDEAYR-VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR--F 405
           G    G    A + V + M+     D  T  M+I  +C+ G+ E+A ++   +   R  +
Sbjct: 537 GSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKW 596

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
            P + +++ +I GLC      D  +LLE MI  GI PS  T+  L    I
Sbjct: 597 RPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFI 646



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 148/309 (47%), Gaps = 4/309 (1%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M + G++ N+ +++ L++ LC S  +  A      M  R   P+  T S L++G      
Sbjct: 272 MVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGT 331

Query: 216 LPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
              A +++ +M+   G  P++V Y  +V   C  G + +A+ +   M+   C P    Y 
Sbjct: 332 TFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYG 391

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++ +     ++ AV  + +M  +G   +V +Y  ++ A C+ +KFK    +++ M+ +
Sbjct: 392 SLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKE 451

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEK 392
             AP+  T N  + GL   G  D A +VFR+M +   C  +  TY  ++    +   +E+
Sbjct: 452 NCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEE 511

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A+ + + + ++    S  T++ L++G C+ G+   +  L+  M+  G  P   T   +  
Sbjct: 512 AYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIIL 571

Query: 453 LLIKEGRED 461
              K+G+ +
Sbjct: 572 AYCKQGKAE 580



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 8/258 (3%)

Query: 216 LPRAREIFREMVDTGC-NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           +P A   F+ + ++       +T+ +M+  L   G+VD    +++ M       +  ++ 
Sbjct: 56  VPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFI 115

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  Y      E AV+ F  +++ G    V +YN ++      N+ + +Y V +DM   
Sbjct: 116 SVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRD 175

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G  PN  T N++L  L    + D A ++   M  K C  DA +YT +I   C+ G +++ 
Sbjct: 176 GFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEG 235

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            ++      +RF P +  ++ LINGLC +     +  L+ +M+EKGI P+  ++  L  +
Sbjct: 236 REL-----AERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINV 290

Query: 454 LIKEGR-EDVLKFLQEKM 470
           L   G+ E    FL + +
Sbjct: 291 LCNSGQIELAFSFLTQML 308


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 9/406 (2%)

Query: 20  RRYNSSEPSTEALDAA-KSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT 78
           RR    +P+   LD     I KI    P    + AL+   +++   +V +VL K      
Sbjct: 50  RRVLRKDPNARKLDERFIRILKIFKWGPDA--EKALEVLKLKLDIRLVREVL-KIDVEVH 106

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCII 137
           +   FFKWA K++N+EH    Y ++I  L + R    +W  +  M ++   +       I
Sbjct: 107 VKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEI 166

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD--CMKDR 195
           ++   RV+ V +A+  F  ++          +N ++  L +  +  K  E+++  C +  
Sbjct: 167 VKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGH 226

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             PD+ TYS L+  +GK      A  +F EM + G  P    Y  ++ +  K G+V+EAL
Sbjct: 227 CFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEAL 286

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +V  M    C PT + Y+ L+   G   R+EDA   +  M K+G   DV + N LI   
Sbjct: 287 NLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINIL 346

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-GRGETDEAYRVFRRMIKLCEADA 374
            ++++ K    + ++M      PN  T N I+  L   +    EA     RM K     +
Sbjct: 347 GRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPS 406

Query: 375 D-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
             TY+++I  FC+   +EKA  + + M  K F P    +  LIN L
Sbjct: 407 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSL 452



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 169/370 (45%), Gaps = 39/370 (10%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           K+   + + + Y +++    K+ + +   +LV+ MR +R +  V T+  ++R   +  +V
Sbjct: 258 KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRV 317

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--------------- 192
           E+A   +  M K G   ++   N L++ L +S  +++A E+F+ M               
Sbjct: 318 EDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTI 377

Query: 193 ----------------------KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
                                 KD  +P S TYSIL++G+ K   + +A  +  EM + G
Sbjct: 378 IKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 437

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P    Y  +++ L KA R + A  + + +       +  +Y+V++  +G   R  +A+
Sbjct: 438 FPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAM 497

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
             F EM+K G + DV  YNALI    +A+     + + + M   G  P+  + NIILNGL
Sbjct: 498 GLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGL 557

Query: 351 IGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
              G    A  +F +M     + DA +Y  ++    + G  E+A K+ K M  K F   +
Sbjct: 558 ARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDL 617

Query: 410 HTFSVLINGL 419
            T+S ++  +
Sbjct: 618 ITYSSILEAV 627



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 41/289 (14%)

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K  F  DS TY  L+    ++  +       ++MV + C         +V +L +   V+
Sbjct: 118 KRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVN 177

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNAL 311
           +AL I   +    CRPT+  Y+ ++     E   E   + + EM   G    D   Y+AL
Sbjct: 178 KALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSAL 237

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I AF K N+  +  R+  +M   G+ P                                 
Sbjct: 238 ISAFGKLNRDDSAVRLFDEMKENGLQPT-------------------------------- 265

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
             A  YT ++ ++ + G++E+A  +   M+++R +P+++T++ LI GL   G V D+  +
Sbjct: 266 --AKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGV 323

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK---FLQEKMNLLVKEP 477
            ++M++ G +P       L  +L   GR D LK    L E+M LL   P
Sbjct: 324 YKNMLKDGCKPDVVLMNNLINIL---GRSDRLKEAVELFEEMRLLNCTP 369



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 36/228 (15%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  +VE+A+     M + G     AA+  L+++L K+K    A E+F  +
Sbjct: 409 TYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQEL 468

Query: 193 KD---------------------RF---------------IPDSKTYSILLEGWGKDPNL 216
           K+                     RF               IPD   Y+ L+ G  +   +
Sbjct: 469 KENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMM 528

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  +FR M + GCNPDI ++ I+++ L + G    A+ +   M S+  +P +  Y+ +
Sbjct: 529 DEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTV 588

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
           +         E+A     EM   G   D+  Y++++ A  K ++ +N+
Sbjct: 589 LGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDEDRNM 636


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 149/301 (49%), Gaps = 5/301 (1%)

Query: 173 LSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           ++ LCK   + +A EIF  M+++   PDS TY+IL+ G  KD  L     +  EM   G 
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P +VTY  ++   C AGRVD A+ I+  M+     P +  Y+ L+        +E A+ 
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAIL 217

Query: 292 TFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              EM+  G     +V  Y  LI   C+   F+     L +M   G  PN+ T   +++G
Sbjct: 218 VLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L  +G   EA  +   M+ + CE D   Y  +I   C+ GEL+ A ++   M  K   P 
Sbjct: 278 LCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQ 467
           + T++ LI GLCD G++ ++  L+++M  KGI P+  T+  L     +  R D  L+ + 
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVN 397

Query: 468 E 468
           E
Sbjct: 398 E 398



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 147/313 (46%), Gaps = 4/313 (1%)

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYS 204
           ++ EA+  F  M++ G   +   +N L++ LCK   +     + D M+ R F P   TY+
Sbjct: 106 QIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYT 165

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-- 262
            L+ G+     +  A +I  EM   G  P+ VTY  ++  LC  G V+ A+ ++K M   
Sbjct: 166 TLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLR 225

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
              C P    Y+ L+H    +   E  ++   EM  +G   + A Y ALI   C+   F 
Sbjct: 226 GNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFL 285

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
               +L +M + G   +    N +++GL   GE D A  +   M+ K    D  TYT +I
Sbjct: 286 EAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLI 345

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
           +  C  G L++A  + + M+ K  +P+  T++ LING         +  L+ +M   G+ 
Sbjct: 346 QGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLM 405

Query: 442 PSGETFGKLRKLL 454
           P+G+ +  L K L
Sbjct: 406 PAGDIYKILFKSL 418



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +P +  I+R  +    + D+++Y   ++ LCK G++ EA+ I + M+     P SF Y++
Sbjct: 72  IPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNI 131

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++    + ++E  V    EM+  G    V  Y  LI  FC A +      +L +M  +G
Sbjct: 132 LINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRG 191

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----CEADADTYTMMIKMFCQGGELE 391
           + PN+ T   ++ GL   GE + A  V + M KL    C  +  TYT +I   CQ G  E
Sbjct: 192 ITPNTVTYTALIQGLCDCGEVERAILVLKEM-KLRGNECCPNVVTYTQLIHGLCQKGLFE 250

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
              +    M +    P+  T++ LI+GLC KG   ++ VLL +M+  G       +  L 
Sbjct: 251 MGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLI 310

Query: 452 KLLIKEGREDVLKFLQ 467
             L K G  D  + +Q
Sbjct: 311 DGLCKMGELDFAREMQ 326



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 5/291 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A   F+  E++ +   S   Y+ +I  L K  Q ++   L++ M+ +     V T+  ++
Sbjct: 110 AMEIFREMEEKGSAPDSF-TYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLI 168

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR--- 195
             +    +V+ A+   + M+  G+T N   +  L+  LC    V +A  +   MK R   
Sbjct: 169 HGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNE 228

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
             P+  TY+ L+ G  +        E   EM+ +GC P+  TY  ++  LC+ G   EA 
Sbjct: 229 CCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAA 288

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++  M +  C     IY+ L+        ++ A +  + M + G+  DV  Y +LI   
Sbjct: 289 VLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGL 348

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
           C A        ++++M +KG+ PNS T   ++NG      TD A ++   M
Sbjct: 349 CDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEM 399



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 114/266 (42%), Gaps = 4/266 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKV 147
           + + +  +V  Y ++I       +     D+++ M  + +  N  T+  +++      +V
Sbjct: 153 QARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEV 212

Query: 148 EEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYS 204
           E A+     M+  G     N+  +  L+  LC+        E  D M      P++ TY+
Sbjct: 213 ERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYT 272

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            L+ G  +  +   A  +  EMV  GC  D+V Y  ++D LCK G +D A  +   M   
Sbjct: 273 ALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEK 332

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P  F Y+ L+        +++A+    EM   GI+ +   Y  LI  F +A++  + 
Sbjct: 333 GVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHA 392

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGL 350
            +++ +M S G+ P      I+   L
Sbjct: 393 LQLVNEMKSNGLMPAGDIYKILFKSL 418


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 187/384 (48%), Gaps = 9/384 (2%)

Query: 74  RNAGTLAFCFFKWA---EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN 130
           RN    A  F+++A   E+++N +  + +  +MI +L +  +  I   +          N
Sbjct: 209 RNECDKAVGFYEFAVKRERRKNEQGKLAS--AMISTLGRYGKVTIAKRIFETAFAGGYGN 266

Query: 131 -VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEI 188
            V  F  ++  Y R    EEA+  FN M++YG+  NL  +N ++ A  K     ++  + 
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           FD M+   + PD  T++ LL    +      AR +F EM +     D+ +Y  ++D +CK
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICK 386

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G++D A  I+  M      P    YS ++  +    R ++A++ F EM   GI  D   
Sbjct: 387 GGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN L+  + K  + +    +L++M S G+  +  T N +L G   +G+ DE  +VF  M 
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506

Query: 368 K-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           +     +  TY+ +I  + +GG  ++A ++++  K       +  +S LI+ LC  G+V 
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566

Query: 427 DSCVLLEDMIEKGIRPSGETFGKL 450
            +  L+++M ++GI P+  T+  +
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSI 590



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 163/349 (46%), Gaps = 25/349 (7%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVY 152
           E  V +Y+++++++ K  Q  + ++++  M  KR M NV ++  ++  +A+  + +EA+ 
Sbjct: 371 EQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALN 430

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD----RFIPDSKTYSILLE 208
            F  M+  G+  +  ++N LLS   K   V +++E  D +++        D  TY+ LL 
Sbjct: 431 LFGEMRYLGIALDRVSYNTLLSIYTK---VGRSEEALDILREMASVGIKKDVVTYNALLG 487

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
           G+GK       +++F EM      P+++TY  ++D   K G   EA+ I +   S   R 
Sbjct: 488 GYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRA 547

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
              +YS L+        +  AV    EM K GI  +V  YN++I AF ++          
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS---- 603

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388
            D ++ G  P S +    L+ L    ET E  RV +   +L     +  T      C+ G
Sbjct: 604 ADYSNGGSLPFSSSA---LSALT---ET-EGNRVIQLFGQLTTESNNRTTKD----CEEG 652

Query: 389 --ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
             EL    +V++ M      P++ TFS ++N         D+ +LLE++
Sbjct: 653 MQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 5/240 (2%)

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M+  L + G+V  A  I ++  +     T + +S L+  YG     E+A+  F  M++ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 301 ILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           +  ++  YNA+I A  K   +FK V +   +M   GV P+  T N +L  +  RG   EA
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLL-AVCSRGGLWEA 357

Query: 360 YR-VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
            R +F  M  +  E D  +Y  ++   C+GG+++ AF++   M +KR +P++ ++S +I+
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKE 476
           G    G   ++  L  +M   GI     ++  L  +  K GR E+ L  L+E  ++ +K+
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKK 477


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 179/374 (47%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ ++  L +  +      L++ M +++M+ +  T+ I+    +R    +  +  F    
Sbjct: 273 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 332

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           K GVT      + LL+ LCK   V  A+E+   + +   +P    Y+ L+ G+ +   L 
Sbjct: 333 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 392

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A   F +M      PD +TY  +++ LCKA R+  A  ++  M      PT   ++ L+
Sbjct: 393 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 452

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             YG   ++E       EM++NG+  +V  Y +++ AFCK  K      +L DM  K V 
Sbjct: 453 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 512

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN++  N I++  +  G  D+A+ +  +M          TY ++IK  C   ++ +A ++
Sbjct: 513 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 572

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              +   R IP   +++ LI+  C +G +  +  L + M + GI+ +  T+ +L   L  
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 632

Query: 457 EGREDVLKFLQEKM 470
            GR + +++L +KM
Sbjct: 633 AGRLNEMEYLYQKM 646



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +E      + M  +G+  N   +N LLS LC++  + +   + D M
Sbjct: 237 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 296

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
              + +PD  TYSIL +G  ++ +      +F + +  G      T  I+++ LCK G+V
Sbjct: 297 ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKV 356

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  +++S+ +    PT  IY+ L++ Y     +E A  TF +M+   I  D   YNAL
Sbjct: 357 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 416

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I   CKA +  N   +L +M   GV P   T N +++     G+ ++ + V   M +   
Sbjct: 417 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 476

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + +  +Y  ++  FC+ G++ +A  +   M  K  +P+   ++ +I+   + G    + +
Sbjct: 477 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 536

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L+E M   GI PS  T+  L K L  + +
Sbjct: 537 LVEKMKSNGISPSIVTYNLLIKGLCNQSQ 565



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 159/360 (44%), Gaps = 38/360 (10%)

Query: 149 EAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           EAV     M + G    N  ++N +++ + ++     A E+FD M +R  +P+  TY+ +
Sbjct: 182 EAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTM 241

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G  K  +L     +  +MV  G  P+ +TY +++  LC+AGR+ E   ++  M S   
Sbjct: 242 IDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKM 301

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  F YS+L          +  +  F +  KNG+       + L+   CK  K      
Sbjct: 302 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEE 361

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM----IK------------LC 370
           VL+ + + G+ P     N ++NG    GE + A+  F +M    IK            LC
Sbjct: 362 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 421

Query: 371 EAD--------------------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           +A+                     +T+  +I  + + G+LEK F V   M+     P++ 
Sbjct: 422 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVV 481

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++  ++N  C  G + ++  +L+DM  K + P+ + +  +    ++ G  D    L EKM
Sbjct: 482 SYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 541



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 155/332 (46%), Gaps = 48/332 (14%)

Query: 114 QIMWDLVNA--MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +++  LVNA  + T+ + N      ++  Y +  ++E A  TF  M+   +  +   +N 
Sbjct: 361 EVLQSLVNAGLVPTRVIYNT-----LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 415

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L++ LCK++ +  AQ++   M+D  + P  +T++ L++ +G+   L +   +  EM + G
Sbjct: 416 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 475

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P++V+YG +V+  CK G++ EA+ I+  M      P + +Y+ ++  Y VE+   D  
Sbjct: 476 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY-VEHGPNDQA 534

Query: 291 DTFLE-MEKNGI-----------------------------------LADVAMYNALIGA 314
              +E M+ NGI                                   + D   YN LI A
Sbjct: 535 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 594

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEA 372
            C          + + M+  G+    RT + +++GL G G  +E   ++++M++  +  +
Sbjct: 595 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPS 654

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +A  + +M++ + + G   KA  + K M  KR
Sbjct: 655 NA-IHNIMVEAYSKYGNEIKAEDLRKEMLQKR 685



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 150/319 (47%), Gaps = 3/319 (0%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIR 111
           +L  +G+  +  I   ++  +   G L   F  + + K ++ +     Y+++I  L K  
Sbjct: 365 SLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 424

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +     DL+  M+   +   VETF  ++  Y R  ++E+     + MQ+ G+  N+ ++ 
Sbjct: 425 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 484

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            +++A CK+  + +A  I D M  +  +P+++ Y+ +++ + +     +A  +  +M   
Sbjct: 485 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 544

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G +P IVTY +++  LC   ++ EA  I+ S+ +    P +  Y+ L+        I+ A
Sbjct: 545 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 604

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +D    M K GI + V  Y+ LI     A +   +  + + M    V P++   NI++  
Sbjct: 605 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 664

Query: 350 LIGRGETDEAYRVFRRMIK 368
               G   +A  + + M++
Sbjct: 665 YSKYGNEIKAEDLRKEMLQ 683



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 4/227 (1%)

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVH 278
           R  F  +   G  PD   +   V     AG + EA+G+++ M       P +F Y+V++ 
Sbjct: 149 RRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIA 208

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 R  DAV+ F EM +  +L +   YN +I    K    +  +R+   M   G+ P
Sbjct: 209 GMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKP 268

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           N+ T N++L+GL   G   E   +   M  +    D  TY+++     + G+ +    ++
Sbjct: 269 NAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 328

Query: 398 -KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            KY+K    I   +T S+L+NGLC  G VS +  +L+ ++  G+ P+
Sbjct: 329 GKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 374



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 2/153 (1%)

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTY 377
           +  +V R    + S G  P++   N  +   +  G+  EA  + RRM +      +A +Y
Sbjct: 144 RHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSY 203

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            ++I    + G    A +V+  M  +  +P+  T++ +I+G    G +     L + M+ 
Sbjct: 204 NVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVC 263

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            G++P+  T+  L   L + GR      L ++M
Sbjct: 264 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 296


>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
 gi|223943161|gb|ACN25664.1| unknown [Zea mays]
 gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
 gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
          Length = 535

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 193/401 (48%), Gaps = 9/401 (2%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A  FF         +     Y SMI  LAK R + +   L++ MR + + ++ +    + 
Sbjct: 118 AVAFFHHVSPSLPADSLPDLYASMIVLLAKHRHFGLARHLLDEMRERAVPISRQLILALT 177

Query: 139 RKYARVQKVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI 197
           R+Y R +   EA   F  M++YG    + A    LL+AL K +   +AQ +FD  +  F 
Sbjct: 178 RRYVRAEMPSEAADLFRRMEEYGAGAPDPATLASLLAALSKKRLASEAQALFDSCRTVFT 237

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD   Y+ ++  W +   L  A  +F EM  +G  P++ TY  ++D + +AG+V  A  +
Sbjct: 238 PDVVLYTAVVHAWCRAGRLDEAERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQEL 297

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
           +  M  + C P +  ++ ++ ++    R E  +    +M++     DV  YN LI   C 
Sbjct: 298 LCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCG 357

Query: 318 ANK--FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
             +       +VL  M +K   P+  T N +   L+  G    A++++ +M +L C+ + 
Sbjct: 358 KGQGNLDAALKVLDKMTAKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNV 417

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  ++++F +   ++   ++ K M  +   P+MHT++ LI   C +G    +   L++
Sbjct: 418 VTYNCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHTYAALIEAFCGRGNWKRAHTTLKE 477

Query: 435 MI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474
           MI EK  +PS +    +  LL K G+   LK  +E + L+V
Sbjct: 478 MIEEKSFKPSKQVRDMVLVLLRKAGQ---LKKHEELVELMV 515



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 136/337 (40%), Gaps = 42/337 (12%)

Query: 147 VEEAVYTFNVMQKYGVTQNLA-AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI 205
           + EAV  F+ +       +L   +  ++  L K ++   A+ + D M++R +P S+   +
Sbjct: 115 LPEAVAFFHHVSPSLPADSLPDLYASMIVLLAKHRHFGLARHLLDEMRERAVPISRQLIL 174

Query: 206 LLEGWGKDPNLP-RAREIFREMVDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
            L        +P  A ++FR M + G   PD  T   ++  L K     EA  +  S   
Sbjct: 175 ALTRRYVRAEMPSEAADLFRRMEEYGAGAPDPATLASLLAALSKKRLASEAQALFDS--- 231

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
             CR T F                                DV +Y A++ A+C+A +   
Sbjct: 232 --CR-TVFT------------------------------PDVVLYTAVVHAWCRAGRLDE 258

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIK 382
             RV  +M   G+ PN  T   +++ +   G+   A  +  +MI   C  +  T+  +++
Sbjct: 259 AERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAIMR 318

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL--LEDMIEKGI 440
              + G  E+  +V   M+  R  P + T++ LI   C KG  +    L  L+ M  K  
Sbjct: 319 SHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGNLDAALKVLDKMTAKKC 378

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
            P   TF  + +LL+  G       L EKM  L  +P
Sbjct: 379 VPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKP 415


>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 173/355 (48%), Gaps = 3/355 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKV 147
           ++  + H   +Y S+I  LAK R +  +  ++  +R + +   E+ F  +++ Y +   V
Sbjct: 73  QEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMALIQHYGKAGWV 132

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206
           ++AV  F+ +  +   + + + N L++ L  +  + KA+  FD  KD R  P+S +++IL
Sbjct: 133 DKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNIL 192

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+    +   A ++F EM++    P +VTY  ++  LC+   + +A  +++ M     
Sbjct: 193 IKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIKKRI 252

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP +  + +L+          +A     +ME  G    +  Y  L+    K  K      
Sbjct: 253 RPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKIDEAKI 312

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +L +M  + + P+    NI++N L   G   EAYR    M +K C+ +A TY M++  FC
Sbjct: 313 LLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIVDGFC 372

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           + G+ +    V   M   R  P+  TF  +++GL   G +  +C +LE M +K +
Sbjct: 373 RIGDFDSGLNVLNAMLASRHSPTPATFVRMVSGLIKGGNLDHACFVLEVMGKKKL 427



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 152/306 (49%), Gaps = 2/306 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT- 202
           ++  EEA+  F+  Q+ G   +  +++ L+  L KS+N     +I   ++ R +   ++ 
Sbjct: 59  IEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESL 118

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +  L++ +GK   + +A ++F ++    C   I +   +++VL   G +++A        
Sbjct: 119 FMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAK 178

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               RP S  +++L+  +  +   E A   F EM +  +   V  YN+LIG  C+ N   
Sbjct: 179 DMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMG 238

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV-FRRMIKLCEADADTYTMMI 381
               +L+DM  K + PN+ T  +++ GL   GE +EA ++ F    + C+     Y +++
Sbjct: 239 KATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLM 298

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G++++A  +   MK +R  P    +++L+N LC +G V ++   L +M  KG +
Sbjct: 299 SDLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCK 358

Query: 442 PSGETF 447
           P+  T+
Sbjct: 359 PNAATY 364



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 15/296 (5%)

Query: 86  WAEKQQNYEHSVRAYHSM--IESL----------AKIRQYQIMWDLVNAMRTKRMLNVET 133
           W +K  +  H + ++  +  I+SL           ++ + +  +D    MR +   N  +
Sbjct: 131 WVDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRP--NSVS 188

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           F I+++ +      E A   F+ M +  V  ++  +N L+  LC++ ++ KA  +  D +
Sbjct: 189 FNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMI 248

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K R  P++ T+ +L++G   +     A+++  +M   GC P +V YG+++  L K G++D
Sbjct: 249 KKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKID 308

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++  M     +P   IY++LV+    E R+ +A  T  EM+  G   + A Y  ++
Sbjct: 309 EAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIV 368

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             FC+   F +   VL  M +   +P   T   +++GLI  G  D A  V   M K
Sbjct: 369 DGFCRIGDFDSGLNVLNAMLASRHSPTPATFVRMVSGLIKGGNLDHACFVLEVMGK 424



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 16/282 (5%)

Query: 202 TYSILLEGWGKDPNLPRAREI---------FREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           T+    + W + P L   +EI         F +  + G   D  +Y  ++  L K+   D
Sbjct: 39  THKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFD 98

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
               I++ +     R    ++  L+  YG    ++ AVD F ++     +  +   N LI
Sbjct: 99  AVDQILRLVRYRNVRCRESLFMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQSLNTLI 158

Query: 313 GAFC---KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
                  +  K K+ +   KDM    + PNS + NI++ G + + + + A +VF  M+++
Sbjct: 159 NVLVDNGELEKAKSFFDGAKDMR---LRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 215

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             +    TY  +I   C+  ++ KA  + + M  KR  P+  TF +L+ GLC  G  +++
Sbjct: 216 EVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEA 275

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             L+ DM  +G +P    +G L   L K G+ D  K L  +M
Sbjct: 276 KKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKIDEAKILLGEM 317


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 3/389 (0%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVE 132
           RN   L  C       +Q  E SV  Y S+I+   K    +  + L   M R   + +V 
Sbjct: 392 RNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVV 451

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
              +++   +R   ++EA+  F    K G+T N   FN L+    + K  R   +++  M
Sbjct: 452 VCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILM 511

Query: 193 K-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
              + IPD  TY++L++G  +   L  A  +F +++  G +PD + Y  ++D  CK    
Sbjct: 512 GMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDP 571

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
              L I K M S    P   IY+VL++ +  E  +E+ ++   E+ K G+  D+  YN +
Sbjct: 572 ATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTM 631

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  +C    F    ++ + +      PN+ T  I+++     G  D+A  +F  M+ +  
Sbjct: 632 ICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGP 691

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E +  TY+ +I  + +    E AF++++ M   R  P++ ++S+LI+GLC KG++ ++ +
Sbjct: 692 EPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASL 751

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +  I + + P    +G L +   K GR
Sbjct: 752 AFQCAIGRHLLPDVIAYGILIRGYCKVGR 780



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 170/381 (44%), Gaps = 41/381 (10%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           ++V  F  IM  Y RV  + +A+  +  M K G++ N+  ++ L++ LC++  V +A  +
Sbjct: 343 MDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGV 402

Query: 189 F-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F   +K    P   TYS L++G+ K  NL     ++  M+  G  PD+V   ++++ L +
Sbjct: 403 FGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSR 462

Query: 248 AGRVDEALG-------------------------------------IVKSMDSTVCRPTS 270
            G +DEAL                                      I+  M   +  P  
Sbjct: 463 QGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI--PDV 520

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+VLV     + R+++A+  F ++ K G   D  +Y  LI  FCK        ++ K 
Sbjct: 521 VTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKL 580

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M S G+ P+    N+++N     G  +    + R +IK   E D  TY  MI  +C    
Sbjct: 581 MQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKI 640

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
             KA K+++ +K  R  P+  TF++LI+  C  G + D+ ++   M+E+G  P+  T+  
Sbjct: 641 FSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSC 700

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           L     K    +    L EKM
Sbjct: 701 LIDGYFKTENTESAFELYEKM 721



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 186/439 (42%), Gaps = 49/439 (11%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY------- 113
           + P  +E V+ + R+  T A  FF+WAE      H V+++  +   L + R +       
Sbjct: 53  LQPAHLEPVVFQLRSNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVF 112

Query: 114 ----------QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
                     +++ +   + R         +  ++  Y R   V+ AV TF  M K GV+
Sbjct: 113 DRMVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVS 172

Query: 164 ------------------------------QNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
                                         + L  +  + ++  K   V K       + 
Sbjct: 173 ISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALV 232

Query: 194 DR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R  +P     + +L+G      +  A + F  MV +G +P++VT+  +++V CK  R+D
Sbjct: 233 ERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLD 292

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  +   M      P   IYS+L++      ++E+    F      G+  DV ++++++
Sbjct: 293 EAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIM 352

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
            A+ +         V   M  +G++PN  T +I++NGL   G   EA  VF +++K   E
Sbjct: 353 DAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLE 412

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
               TY+ +I  FC+   L   F ++  M  K  +P +   S+LINGL  +G++ ++   
Sbjct: 413 PSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRF 472

Query: 432 LEDMIEKGIRPSGETFGKL 450
               +++G+  +   F  L
Sbjct: 473 FFQAVKRGLTLNNYLFNAL 491



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 208/460 (45%), Gaps = 25/460 (5%)

Query: 31  ALDAAKSISKIMLS----SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           A+D    +SK+ +S    +   +LD  +D   I V   I+E+  E  +  G   F F  +
Sbjct: 159 AVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDV---ILENYEEMCKGLGVYEFVFNSF 215

Query: 87  -----AEKQQNYEHS---------VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNV 131
                 EK  N+  +         +   + +++ L    Q  +  D  + M R+    N+
Sbjct: 216 LKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNL 275

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
            TF  ++  Y +  +++EA   +N+M + G+  +L  ++ L++ L ++  + +   +F  
Sbjct: 276 VTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSM 335

Query: 192 MKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
              R +  D   +S +++ + +  +L +A E++  M+  G +P++VTY I+++ LC+ GR
Sbjct: 336 ALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGR 395

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V EA G+   +      P+   YS L+  +     + D    +  M + G + DV + + 
Sbjct: 396 VLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSM 455

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKL 369
           LI    +        R       +G+  N+   N +++G      T +  +++  M +  
Sbjct: 456 LINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYK 515

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              D  TYT+++K   + G L++A  ++  +  K F P    +  LI+G C K   +   
Sbjct: 516 VIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGL 575

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
            + + M   GI P    +  L  +  +EG  E+VL+ L+E
Sbjct: 576 QIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLRE 615



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 65  IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
           +V+ + E+ R    LA  FF+  +K  + +H +  Y ++I+   K R       +   M+
Sbjct: 526 LVKGLAEQGRLDEALAL-FFQLLKKGFSPDHII--YCTLIDGFCKKRDPATGLQIFKLMQ 582

Query: 125 TKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           +  +  ++  + +++  + R   VE  +     + KYG+  ++  +N ++   C  K   
Sbjct: 583 SNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFS 642

Query: 184 KAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           KA ++F+ +K  R  P++ T++IL++ + KD  +  A  IF  M++ G  P+I+TY  ++
Sbjct: 643 KAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D   K    + A  + + M      P    YS+L+     +  +E+A   F       +L
Sbjct: 703 DGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLL 762

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
            DV  Y  LI  +CK  +      +   M   G+ P+
Sbjct: 763 PDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 36/278 (12%)

Query: 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
           K + +V T+ ++++  A   +++EA+  F  + K G + +   +  L+   CK ++    
Sbjct: 515 KVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATG 574

Query: 186 QEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG----- 239
            +IF  M+   I PD   Y++L+  + ++  +    E+ RE++  G  PDIVTY      
Sbjct: 575 LQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICG 634

Query: 240 ------------------------------IMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                                         I++D  CK GR+D+A+ I  SM      P 
Sbjct: 635 YCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPN 694

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              YS L+  Y      E A + + +M  + +  ++  Y+ LI   CK    +      +
Sbjct: 695 ILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQ 754

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
               + + P+     I++ G    G   EA  ++  M+
Sbjct: 755 CAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHML 792



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 24/299 (8%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           G+   + +F G+   L + +    A  +FD M  +F                  NL    
Sbjct: 84  GLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQF-----------------GNLEVLG 126

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E      + G NP  V Y  ++   C+ G VD A+     M       + +  S ++   
Sbjct: 127 EFHGSFRNYGSNPSTV-YSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLL 185

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              +RI+  ++ + EM K      + +Y  +  +F K  + +      + +  +G+ P  
Sbjct: 186 IDSDRIDVILENYEEMCKG-----LGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKI 240

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKY 399
             CN IL GL    +   A   F  M++   + +  T++ +I ++C+   L++AF ++  
Sbjct: 241 VDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNL 300

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           M  K  +P +  +S+LINGL   G + +   L    + +G++     F  +    ++ G
Sbjct: 301 MIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVG 359



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 8/192 (4%)

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           S +YS L+H Y     ++ AVDTF  M K G+       + ++     +++   +    +
Sbjct: 140 STVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYE 199

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQG 387
           +M  KG+         + N  + RGE ++     R +++  L     D    ++K  C G
Sbjct: 200 EM-CKGLG----VYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDC-NKILKGLCMG 253

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            ++  A   +  M      P++ TFS LIN  C +  + ++  L   MIEKGI P    +
Sbjct: 254 NQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIY 313

Query: 448 GKLRKLLIKEGR 459
             L   L + G+
Sbjct: 314 SILINGLFRAGK 325



 Score = 38.1 bits (87), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 10/159 (6%)

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
            +Y+ L+  +C+             M+  GV+ +    + +L+ LI     D     +  
Sbjct: 141 TVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEE 200

Query: 366 MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC---DK 422
           M K        Y  +   F + GE+EK     + +  +  +P +   + ++ GLC     
Sbjct: 201 MCK----GLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQI 256

Query: 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           G+ SD     + M+  G  P+  TF  L  +  KE R D
Sbjct: 257 GVASD---FFDMMVRSGPSPNLVTFSTLINVYCKELRLD 292


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 179/375 (47%), Gaps = 3/375 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ ++  L +  +      L++ M +++M+ +  T+ I+    +R    +  +  F   
Sbjct: 87  TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 146

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
            K GVT      + LL+ LCK   V  A+E+   + +   +P    Y+ L+ G+ +   L
Sbjct: 147 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 206

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A   F +M      PD +TY  +++ LCKA R+  A  ++  M      PT   ++ L
Sbjct: 207 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 266

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  YG   ++E       EM++NG+  +V  Y +++ AFCK  K      +L DM  K V
Sbjct: 267 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 326

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN++  N I++  +  G  D+A+ +  +M          TY ++IK  C   ++ +A +
Sbjct: 327 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 386

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
           +   +   R IP   +++ LI+  C +G +  +  L + M + GI+ +  T+ +L   L 
Sbjct: 387 IINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLG 446

Query: 456 KEGREDVLKFLQEKM 470
             GR + +++L +KM
Sbjct: 447 GAGRLNEMEYLYQKM 461



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +E      + M  +G+  N   +N LLS LC++  + +   + D M
Sbjct: 52  TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 111

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
              + +PD  TYSIL +G  ++ +      +F + +  G      T  I+++ LCK G+V
Sbjct: 112 ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKV 171

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  +++S+ +    PT  IY+ L++ Y     +E A  TF +M+   I  D   YNAL
Sbjct: 172 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 231

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I   CKA +  N   +L +M   GV P   T N +++     G+ ++ + V   M +   
Sbjct: 232 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 291

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + +  +Y  ++  FC+ G++ +A  +   M  K  +P+   ++ +I+   + G    + +
Sbjct: 292 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 351

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L+E M   GI PS  T+  L K L  + +
Sbjct: 352 LVEKMKSNGISPSIVTYNLLIKGLCNQSQ 380



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIF 223
           N  ++N +++ + ++     A E+FD M +R  +P+  TY+ +++G  K  +L     + 
Sbjct: 14  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 73

Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283
            +MV  G  P+ +TY +++  LC+AGR+ E   ++  M S    P  F YS+L       
Sbjct: 74  DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 133

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
              +  +  F +  KNG+       + L+   CK  K      VL+ + + G+ P     
Sbjct: 134 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 193

Query: 344 NIILNGLIGRGETDEAYRVFRRM----IK------------LCEAD-------------- 373
           N ++NG    GE + A+  F +M    IK            LC+A+              
Sbjct: 194 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 253

Query: 374 ------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                  +T+  +I  + + G+LEK F V   M+     P++ ++  ++N  C  G + +
Sbjct: 254 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPE 313

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  +L+DM  K + P+ + +  +    ++ G  D    L EKM
Sbjct: 314 AVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 356



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 153/331 (46%), Gaps = 46/331 (13%)

Query: 114 QIMWDLVNA--MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +++  LVNA  + T+ + N      ++  Y +  ++E A  TF  M+   +  +   +N 
Sbjct: 176 EVLQSLVNAGLVPTRVIYNT-----LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 230

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L++ LCK++ +  AQ++   M+D  + P  +T++ L++ +G+   L +   +  EM + G
Sbjct: 231 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 290

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P++V+YG +V+  CK G++ EA+ I+  M      P + +Y+ ++  Y VE+   D  
Sbjct: 291 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY-VEHGPNDQA 349

Query: 291 DTFLE-MEKNGI-----------------------------------LADVAMYNALIGA 314
              +E M+ NGI                                   + D   YN LI A
Sbjct: 350 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 409

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
            C          + + M+  G+    RT + +++GL G G  +E   ++++M++     +
Sbjct: 410 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPS 469

Query: 375 DT-YTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  + +M++ + + G   KA  + K M  KR
Sbjct: 470 NAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 500



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 3/327 (0%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIR 111
           +L  +G+  +  I   ++  +   G L   F  + + K ++ +     Y+++I  L K  
Sbjct: 180 SLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 239

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +     DL+  M+   +   VETF  ++  Y R  ++E+     + MQ+ G+  N+ ++ 
Sbjct: 240 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 299

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            +++A CK+  + +A  I D M  +  +P+++ Y+ +++ + +     +A  +  +M   
Sbjct: 300 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 359

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G +P IVTY +++  LC   ++ EA  I+ S+ +    P +  Y+ L+        I+ A
Sbjct: 360 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 419

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +D    M K GI + V  Y+ LI     A +   +  + + M    V P++   NI++  
Sbjct: 420 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 479

Query: 350 LIGRGETDEAYRVFRRMIKLCEADADT 376
               G   +A  + + M++      DT
Sbjct: 480 YSKYGNEIKAEDLRKEMLQKRNNHDDT 506


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 174/361 (48%), Gaps = 7/361 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I+S  K +     +DL + M  K++  NV TF  ++  +  V +++EAV   N
Sbjct: 194 VIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLN 253

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M    V  N+  FN L+  LCK   V+KA  +   M K    P+  TY+ L++G+    
Sbjct: 254 EMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVK 313

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            + +A+ +F  +   G  P++ +Y +M++ LCK   VDEA+ + K M      P +  YS
Sbjct: 314 EVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYS 373

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+       RI D  D   E+   G  A++  YN+L+   CK ++      +L  M  +
Sbjct: 374 SLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDE 433

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGELE 391
           G+ P+  T   +++GL   G   +A R+++ +  LC+    +   YT+MI   C+ G  +
Sbjct: 434 GIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDL--LCKGYPLNIRMYTVMINGLCKEGFFD 491

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           +A  +   M+    +P   T+  LI+ L        +  LL +MI +    SG+   + +
Sbjct: 492 EALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARESDCSGKEQSREK 551

Query: 452 K 452
           K
Sbjct: 552 K 552



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 179/395 (45%), Gaps = 36/395 (9%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
           A   F       N+   +  ++ ++ SL K+  ++I       M  K             
Sbjct: 36  AVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELK------------- 82

Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199
                  ++  ++TFN++       +L   N   S + K             +K  + PD
Sbjct: 83  ------GIQPEMFTFNIL--INCFSHLCQLNFAFSMVAK------------ILKLGYQPD 122

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
           + T + LL G   +  +  A      ++    + D V+YG +++ LCK+G    AL +++
Sbjct: 123 TVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLR 182

Query: 260 SMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
            ++   + RP   +Y+ ++ ++  +  + DA D + EM    I  +V  +N+LI  FC  
Sbjct: 183 KIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIV 242

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTY 377
            + K    +L +M+   V PN  T NI+++GL   GE  +A  V   MIK   E +  TY
Sbjct: 243 GQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTY 302

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T ++  +    E+ KA  V+  + L+   P++H++SV+INGLC   +V ++  L ++M  
Sbjct: 303 TSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHL 362

Query: 438 KGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           K + P+  T+  L   L K GR  DV   + E  N
Sbjct: 363 KNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINN 397



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 158/309 (51%), Gaps = 5/309 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  ++S+I     + Q +    L+N M    +  NV TF I++    +  +V++A    
Sbjct: 228 NVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVL 287

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           +VM K GV  N+  +  L+      K V KA+ +F+ +  R + P+  +YS+++ G  K+
Sbjct: 288 SVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKN 347

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI- 272
             +  A ++F+EM      P+ VTY  ++D LCK+GR+ +   ++  +++   +P + I 
Sbjct: 348 KMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNR-GQPANIIT 406

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L++     ++++ A+    +M+  GI  D++ Y  L+   CK  + K+  R+ +D+ 
Sbjct: 407 YNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLL 466

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELE 391
            KG   N R   +++NGL   G  DEA  +  +M    C  DA TY  +I    +  +  
Sbjct: 467 CKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNG 526

Query: 392 KAFKVWKYM 400
           KA K+ + M
Sbjct: 527 KAVKLLREM 535



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 284 NRIEDAVDTFLE-MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           + ++DAV +F   +  N     +  +N ++ +  K N FK      + M  KG+ P   T
Sbjct: 31  DNLDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFT 90

Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            NI++N      + + A+ +  +++KL  + D  T   +++  C  G++++A     ++ 
Sbjct: 91  FNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVI 150

Query: 402 LKRFIPSMHTFSVLINGLCDKG 423
            KRF     ++  LINGLC  G
Sbjct: 151 RKRFHLDQVSYGTLINGLCKSG 172


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 165/316 (52%), Gaps = 10/316 (3%)

Query: 154 FNVMQKYGVT--QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGW 210
            N   +YG+     L +++ ++  LCK +   +A+E+F  MK + I PD  +Y+ L+ G+
Sbjct: 288 LNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGF 347

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                  +A+ +F EM+D G  PD+ T  +++D+LCK G+V EA  +++ +    C P  
Sbjct: 348 CLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDV 407

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              + LV    +++RI  A   FL+M+K G + +V     L+   C++   K    + K+
Sbjct: 408 VTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKN 467

Query: 331 MNSK------GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKM 383
           M S          PN+ + +II++GL   G  DEA  +F+ M  L    D  +YT +I  
Sbjct: 468 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHG 527

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           FC+ G+ + A  ++  M      P + TFSVLI+ LC +G V ++  LLE MI++G  P+
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 587

Query: 444 GETFGKLRKLLIKEGR 459
             T+  L K L    R
Sbjct: 588 TVTYTTLVKGLCMNDR 603



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 85/449 (18%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           ++ +Y  +I+ L K R+     +L   M+ + M+ +V ++  ++  + R  K E+A   F
Sbjct: 120 TLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLF 179

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD---------------------CMK 193
           N M   G+  ++   + L+  LCK   V +A E+ +                     CMK
Sbjct: 180 NEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMK 239

Query: 194 DRFI---------------PDSKTYSILLEGWGKDPNLPRAREIFREMV-DTG-----CN 232
            R                 PD+  Y  L++G  +  N+  A ++ +EM+ DTG     C 
Sbjct: 240 HRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCK 299

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P +++Y I++D LCK  R DEA  + K M +    P    Y+ L+H + +  + E A   
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
           F EM   GI  DV   + LI   CK  K     ++L+ +  +G  P+  TC  ++ GL  
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCM 419

Query: 353 RGETDEAYRVFRRMIKL------------------------------------------C 370
           +    +A ++F +M KL                                          C
Sbjct: 420 KHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINC 479

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + +A +Y+++I   C+ G  ++A +++K MK    IP + +++ LI+G C  G   D+  
Sbjct: 480 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 539

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L  +M++ G++P   TF  L  +L KEG+
Sbjct: 540 LFNEMVDIGVQPDVTTFSVLIDMLCKEGK 568



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 157/310 (50%), Gaps = 14/310 (4%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVM----QKYGVT--QNLAAFNGLLSALCKSKN 181
           M NV T   +M+   +   ++ A+     M      YG+    N  +++ ++  LCK   
Sbjct: 439 MPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGR 498

Query: 182 VRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
             +A+E+F  MK    IPD  +Y+ L+ G+ +      A+ +F EMVD G  PD+ T+ +
Sbjct: 499 EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 558

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           ++D+LCK G+V EA  +++ M    C P +  Y+ LV    + +RI +A   F++M+K G
Sbjct: 559 LIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG 618

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNS------KGVAPNSRTCNIILNGLIGRG 354
            L DV  Y  L+   C+    K    + K M S          P+  + +II++GL   G
Sbjct: 619 CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHG 678

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             DEA  +F+ M  L    +  +YT +I  FC+ G+LE A  ++  M  +    +  T+S
Sbjct: 679 REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYS 738

Query: 414 VLINGLCDKG 423
           V+I+G C +G
Sbjct: 739 VMIHGFCKEG 748



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 151/283 (53%), Gaps = 10/283 (3%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N + +  +Y  +I+ L K  +     +L   M+   ++ +V ++  ++  + R  K ++A
Sbjct: 478 NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 537

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
            Y FN M   GV  ++  F+ L+  LCK   V +A E+ + M  R  IP++ TY+ L++G
Sbjct: 538 KYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG 597

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS------ 263
              +  +  A ++F +M   GC PD+VTYG ++  LC+ G +  AL + K M S      
Sbjct: 598 LCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYG 657

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
           T  +P    YS+++       R ++A + F EM+  G++ +V  Y +LI  FC++ K ++
Sbjct: 658 TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLED 717

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
              +  +M  +GV  N+ T +++++G    G+ D+A  +F++M
Sbjct: 718 AKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKM 758



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 165/346 (47%), Gaps = 14/346 (4%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA-- 185
           +L++ T+  +++      ++ EA   F  M+K G   +  A+  L+  LC++  +  A  
Sbjct: 42  ILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALH 101

Query: 186 --QEIFDCMKDRFI---PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
             QE+ +      I   P   +YSI+++G  KD     ARE+F+EM   G  PD+++Y  
Sbjct: 102 LHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTS 161

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           ++   C++G+ ++A  +   M     R      S+L+     E ++ +A +    M + G
Sbjct: 162 LIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRG 221

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
            + D+  Y+ LI   C  ++     R+   M   G  P++     ++ GL   G  + A 
Sbjct: 222 CILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTAL 281

Query: 361 RVFRRMIK-------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           ++ + M+         C+    +Y+++I   C+    ++A +++K MK +  +P + +++
Sbjct: 282 QLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYT 341

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            LI+G C  G    +  L  +M++ GI+P   T   L  +L K+G+
Sbjct: 342 TLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGK 387



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 137/282 (48%), Gaps = 8/282 (2%)

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  T  +L++ + K+  +  A E+   MV  GC  DIVTY  ++  LC   R+ EA  +
Sbjct: 8   PDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM----EKNGILADVAM--YNAL 311
             SM    CRP +  Y  L+       +I  A+    EM     + GI     +  Y+ +
Sbjct: 68  FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSII 127

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I   CK  +      + K+M ++G+ P+  +   +++G    G+ ++A  +F  M+ +  
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGI 187

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            +D  T +M+I + C+ G++ +A ++ + M  +  I  + T+S LI GLC K  +S++  
Sbjct: 188 RSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATR 247

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           L   M + G RP    +G L K L + G     L+  QE +N
Sbjct: 248 LFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLN 289



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 7/241 (2%)

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           M+  G  PD+ T G+++D+ CK G+V EA  +++ M    C      YS L+    +++R
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV----LKDMNSKGV--APN 339
           I +A   F+ M+K G   D   Y  L+   C+  K      +    L D +  G+   P 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
             + +II++GL      DEA  +F+ M  +    D  +YT +I  FC+ G+ EKA  ++ 
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            M        + T S+LI+ LC +G V ++  LLE MI++G      T+  L K L  + 
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKH 240

Query: 459 R 459
           R
Sbjct: 241 R 241



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 9/177 (5%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           N  T+  +++      ++ EA   F  MQK G   ++  +  L+  LC++ N++ A E+ 
Sbjct: 587 NTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 646

Query: 190 DCM-------KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
             M          F PD  +YSI+++G  K      ARE+F+EM   G  P++++Y  ++
Sbjct: 647 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLI 706

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
              C++G++++A  +   M     +  +  YSV++H +  E +I+ A+  F +ME N
Sbjct: 707 HGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL--FQKMEAN 761



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 55/100 (55%)

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  T  ++I MFC+ G++ +A ++ + M  +  I  + T+S LI GLC K  +S++  
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           L   M + G RP    +G L K L + G+ ++   L ++M
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEM 106


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 179/374 (47%), Gaps = 3/374 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+ ++  L +  +      L++ M +++M+ +  T+ I+    +R    +  +  F    
Sbjct: 136 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 195

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLP 217
           K GVT      + LL+ LCK   V  A+E+   + +   +P    Y+ L+ G+ +   L 
Sbjct: 196 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 255

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A   F +M      PD +TY  +++ LCKA R+  A  ++  M      PT   ++ L+
Sbjct: 256 GAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 315

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             YG   ++E       EM++NG+  +V  Y +++ AFCK  K      +L DM  K V 
Sbjct: 316 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 375

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKV 396
           PN++  N I++  +  G  D+A+ +  +M          TY ++IK  C   ++ +A ++
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435

Query: 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
              +   R IP   +++ LI+  C +G +  +  L + M + GI+ +  T+ +L   L  
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 495

Query: 457 EGREDVLKFLQEKM 470
            GR + +++L +KM
Sbjct: 496 AGRLNEMEYLYQKM 509



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 2/329 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + +   +E      + M  +G+  N   +N LLS LC++  + +   + D M
Sbjct: 100 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 159

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
              + +PD  TYSIL +G  ++ +      +F + +  G      T  I+++ LCK G+V
Sbjct: 160 ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKV 219

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  +++S+ +    PT  IY+ L++ Y     +E A  TF +M+   I  D   YNAL
Sbjct: 220 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 279

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I   CKA +  N   +L +M   GV P   T N +++     G+ ++ + V   M +   
Sbjct: 280 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 339

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + +  +Y  ++  FC+ G++ +A  +   M  K  +P+   ++ +I+   + G    + +
Sbjct: 340 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 399

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           L+E M   GI PS  T+  L K L  + +
Sbjct: 400 LVEKMKSNGISPSIVTYNLLIKGLCNQSQ 428



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 159/360 (44%), Gaps = 38/360 (10%)

Query: 149 EAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSIL 206
           EAV     M + G    N  ++N +++ + ++     A E+FD M +R  +P+  TY+ +
Sbjct: 45  EAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTM 104

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G  K  +L     +  +MV  G  P+ +TY +++  LC+AGR+ E   ++  M S   
Sbjct: 105 IDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKM 164

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P  F YS+L          +  +  F +  KNG+       + L+   CK  K      
Sbjct: 165 VPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEE 224

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM----IK------------LC 370
           VL+ + + G+ P     N ++NG    GE + A+  F +M    IK            LC
Sbjct: 225 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC 284

Query: 371 EAD--------------------ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
           +A+                     +T+  +I  + + G+LEK F V   M+     P++ 
Sbjct: 285 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVV 344

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++  ++N  C  G + ++  +L+DM  K + P+ + +  +    ++ G  D    L EKM
Sbjct: 345 SYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 404



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 155/332 (46%), Gaps = 48/332 (14%)

Query: 114 QIMWDLVNA--MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
           +++  LVNA  + T+ + N      ++  Y +  ++E A  TF  M+   +  +   +N 
Sbjct: 224 EVLQSLVNAGLVPTRVIYNT-----LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 278

Query: 172 LLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           L++ LCK++ +  AQ++   M+D  + P  +T++ L++ +G+   L +   +  EM + G
Sbjct: 279 LINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENG 338

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
             P++V+YG +V+  CK G++ EA+ I+  M      P + +Y+ ++  Y VE+   D  
Sbjct: 339 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY-VEHGPNDQA 397

Query: 291 DTFLE-MEKNGI-----------------------------------LADVAMYNALIGA 314
              +E M+ NGI                                   + D   YN LI A
Sbjct: 398 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 457

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEA 372
            C          + + M+  G+    RT + +++GL G G  +E   ++++M++  +  +
Sbjct: 458 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPS 517

Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +A  + +M++ + + G   KA  + K M  KR
Sbjct: 518 NA-IHNIMVEAYSKYGNEIKAEDLRKEMLQKR 548



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 3/327 (0%)

Query: 53  ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIR 111
           +L  +G+  +  I   ++  +   G L   F  + + K ++ +     Y+++I  L K  
Sbjct: 228 SLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 287

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +     DL+  M+   +   VETF  ++  Y R  ++E+     + MQ+ G+  N+ ++ 
Sbjct: 288 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYG 347

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            +++A CK+  + +A  I D M  +  +P+++ Y+ +++ + +     +A  +  +M   
Sbjct: 348 SIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 407

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G +P IVTY +++  LC   ++ EA  I+ S+ +    P +  Y+ L+        I+ A
Sbjct: 408 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 467

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +D    M K GI + V  Y+ LI     A +   +  + + M    V P++   NI++  
Sbjct: 468 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEA 527

Query: 350 LIGRGETDEAYRVFRRMIKLCEADADT 376
               G   +A  + + M++      DT
Sbjct: 528 YSKYGNEIKAEDLRKEMLQKRNNHDDT 554



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 4/227 (1%)

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFIYSVLVH 278
           R  F  +   G  PD   +   V     AG + EA+G+++ M       P +F Y+V++ 
Sbjct: 12  RRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIA 71

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                 R  DAV+ F EM +  +L +   YN +I    K    +  +R+   M   G+ P
Sbjct: 72  GMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKP 131

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           N+ T N++L+GL   G   E   +   M  +    D  TY+++     + G+ +    ++
Sbjct: 132 NAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 191

Query: 398 -KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            KY+K    I   +T S+L+NGLC  G VS +  +L+ ++  G+ P+
Sbjct: 192 GKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 237



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCE 371
           A     +  +V R    + S G  P++   N  +   +  G+  EA  + RRM +     
Sbjct: 1   ALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP 60

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +A +Y ++I    + G    A +V+  M  +  +P+  T++ +I+G    G +     L
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            + M+  G++P+  T+  L   L + GR      L ++M
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 159


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 177/364 (48%), Gaps = 3/364 (0%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNV 156
           R ++ M  + AK    +    + N MR + +  +V +F  ++    ++ +V++AV  FN 
Sbjct: 337 RIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQ 396

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   GVT N+  F+ L+  LC      KA+E+F  + D+ I  D+  ++ L+     +  
Sbjct: 397 MINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGR 456

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A+ +   M+  G  P++++Y  +V   C  GR+DEA  ++  M S   +P  F Y++
Sbjct: 457 VMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTI 516

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y    R++DA   F EM   G+   VA YN ++    +  +F     +  +M +  
Sbjct: 517 LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR 576

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
              +  T NIILNGL      DEA+++FRR+  K  + D+ T+ +MI    +GG  E A 
Sbjct: 577 TKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAM 636

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  +     +P + T+ ++   L ++G + +   L   M + G  P+      L + L
Sbjct: 637 DLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRL 696

Query: 455 IKEG 458
           +  G
Sbjct: 697 LHRG 700



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 10/365 (2%)

Query: 96  SVRAYHSMIE-------SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVE 148
           SVRA++ ++        S A  R   +   +     +K   N  T+ I++  + R+ ++E
Sbjct: 48  SVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLE 107

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSIL 206
                F ++ K G   N+   + LL  LC +K V +A +I       F   PD   Y+ +
Sbjct: 108 HGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTV 167

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+ ++  + +A  +F EM+D G  P++VTY  ++D LCKA  VD A G+ + M     
Sbjct: 168 INGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGV 227

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +P +  Y+ L+H Y    + ++ V    EM  +G+  D   Y  L+   CK  + +    
Sbjct: 228 KPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARL 287

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFC 385
               M  KG+ P+     I+L+G   +G   E +     M+      +   + +M   + 
Sbjct: 288 FFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYA 347

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +   +E+A  ++  M+ +   P + +F  LI+ LC  G V D+ +    MI +G+ P+  
Sbjct: 348 KKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIF 407

Query: 446 TFGKL 450
            F  L
Sbjct: 408 VFSSL 412



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 37/341 (10%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y    K +E V     M  +G+  +   +  LL  LCK+   R+A+  FD M
Sbjct: 233 TYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSM 292

Query: 193 KDRFI-PDSKTYSILLEGW-------------------GKDPN----------------L 216
             + I PD   Y+ILL G+                   G  PN                +
Sbjct: 293 FRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMI 352

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A  IF +M   G +PD+V++G ++D LCK GRVD+A+     M +    P  F++S L
Sbjct: 353 EEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSL 412

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           V+      + E A + F E+   GI  D   +N L+   C   +     R++  M   GV
Sbjct: 413 VYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGV 472

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFK 395
            PN  + N ++ G    G  DEA ++   M+    + +  TYT++++ +C+   ++ A+ 
Sbjct: 473 RPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYS 532

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           +++ M +K   P + T++ +++GL   G  S++  L  +MI
Sbjct: 533 LFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMI 573



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 167/402 (41%), Gaps = 72/402 (17%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V  +  ++  + R  +VE+A   F  M   G+  N+  +  ++  LCK++ V +A+ +F
Sbjct: 160 DVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVF 219

Query: 190 DCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M DR + PD+ TY+ L+ G+          ++  EM   G  PD +TY +++D LCK 
Sbjct: 220 QQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKN 279

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE--------------------NR--- 285
           GR  EA     SM     +P   IY++L+H Y  +                    NR   
Sbjct: 280 GRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIF 339

Query: 286 ------------IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
                       IE+A+  F +M + G+  DV  + ALI A CK  +  +       M +
Sbjct: 340 NIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMIN 399

Query: 334 KGVAPN-----------------------------SRTC------NIILNGLIGRGETDE 358
           +GV PN                                C      N ++  L   G   E
Sbjct: 400 EGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVME 459

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A R+   MI++    +  +Y  ++   C  G +++A K+   M      P+  T+++L+ 
Sbjct: 460 AQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLR 519

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           G C    V D+  L  +M+ KG+ P   T+  +   L + GR
Sbjct: 520 GYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGR 561



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 169/369 (45%), Gaps = 5/369 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V AY+++I    +  Q +  ++L   M  + +  NV T+  ++    + Q V+ A   F 
Sbjct: 161 VVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQ 220

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   GV  +   +N L+     +   ++  ++ + M    + PD  TY++LL+   K+ 
Sbjct: 221 QMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNG 280

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
               AR  F  M   G  PD+  Y I++      G + E    +  M      P   I++
Sbjct: 281 RCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFN 340

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           ++   Y  +  IE+A+  F +M + G+  DV  + ALI A CK  +  +       M ++
Sbjct: 341 IMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINE 400

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEK 392
           GV PN    + ++ GL   G+ ++A  +F  ++   +C  DA  +  ++   C  G + +
Sbjct: 401 GVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGIC-VDAVFFNTLMCNLCNEGRVME 459

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A ++   M      P++ +++ L+ G C  G + ++  LL+ M+  G++P+  T+  L +
Sbjct: 460 AQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLR 519

Query: 453 LLIKEGRED 461
              K  R D
Sbjct: 520 GYCKARRVD 528



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 10/285 (3%)

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
            ++ + Q + DL+  +R     NV ++  ++  +    +++EA    +VM   G+  N  
Sbjct: 455 GRVMEAQRLIDLM--IRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512

Query: 168 AFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +  LL   CK++ V  A  +F + +     P   TY+ +L G  +      A E++  M
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +++    DI TY I+++ LCK   VDEA  + + + S   +  S  +++++       R 
Sbjct: 573 INSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           EDA+D F  +   G++ DV  Y  +     +         +   M   G APNS   N +
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNAL 692

Query: 347 LNGLIGRGETDEA----YRVFRRMIKLCEADADTYTMMIKMFCQG 387
           +  L+ RG+   A    Y++  +   L   +A T +M+I ++ +G
Sbjct: 693 VRRLLHRGDISRAGVYLYKLDEKNFSL---EASTTSMLISLYSRG 734



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 276 LVHTYGVENRIEDAVDTFLEMEK---NGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           +V   G  +  E  V  F  M +   + +  +   Y+ LIG FC+  + ++ +     + 
Sbjct: 58  VVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLIL 117

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFR-RMIKL-CEADADTYTMMIKMFCQGGEL 390
             G   N    + +L GL      DEA  +   RM +  C  D   Y  +I  F + G++
Sbjct: 118 KTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQV 177

Query: 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           EKA+ ++  M  +   P++ T++ +I+GLC   +V  +  + + MI++G++P   T+  L
Sbjct: 178 EKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCL 237

Query: 451 RKLLIKEGR-EDVLKFLQEKMNLLVKEPLC 479
               +  G+ ++V++ L+E M+    EP C
Sbjct: 238 IHGYLSTGKWKEVVQMLEE-MSTHGLEPDC 266


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 167/318 (52%), Gaps = 5/318 (1%)

Query: 146 KVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTY 203
           + ++AV  F    + G+ + ++ +FN ++  +C+  N +KA E+ + M +    PD+ T+
Sbjct: 194 RAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITH 253

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +IL++G  +   + +  E+ R +   G C P+ VTY  ++   CKAG++++A+ +   M 
Sbjct: 254 NILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDML 313

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
            +  RP +  Y+VL++ YG    +E AV  + ++       DV  +++LI  +C+  +  
Sbjct: 314 ESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLD 373

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT--YTMM 380
           +  R+ K+M    + PN  T +II++ L  +  + EA  + R +    +    T  Y  +
Sbjct: 374 DAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPV 433

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I + C+GG++++A  +   MK K   P  +T+++LI G C KG + ++  L   M+E G 
Sbjct: 434 IDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGC 493

Query: 441 RPSGETFGKLRKLLIKEG 458
           RP   T       ++K G
Sbjct: 494 RPDNITVNSFVSCVLKAG 511



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 147/303 (48%), Gaps = 6/303 (1%)

Query: 172 LLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           +++ LC+S   R A ++FD M D+  ++P++  +S +         L  A  +  +    
Sbjct: 114 VIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRL 173

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRPTSFIYSVLVHTYGVENRIED 288
           GC  +   Y  +++ L   GR  +A+ + +S +   +  P  + ++V++         + 
Sbjct: 174 GCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQK 233

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIIL 347
           A++    M + G   D   +N L+   C+A +    + VL+ +   GV  PN+ T   ++
Sbjct: 234 ALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVI 293

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +G    G+ ++A  V+  M++     +  TY ++I  + +  ++E A ++++ + L+   
Sbjct: 294 SGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCP 353

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-DVLKF 465
           P + TFS LI+G C  G + D+  + ++M    I+P+  TF  +   L K+ R  + L  
Sbjct: 354 PDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDI 413

Query: 466 LQE 468
           L+E
Sbjct: 414 LRE 416



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 131/264 (49%), Gaps = 6/264 (2%)

Query: 219 AREIFREMVD-TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           A ++F +M+D +G  P+   +  +      AG +D A  ++       C    + Y+ L+
Sbjct: 127 ALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPYAYNYLL 186

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           ++     R +DAV  F    ++G+ + DV  +N +I   C+   F+    +++ M   G 
Sbjct: 187 NSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGC 246

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAF 394
           +P++ T NI+++GL    + ++ + V RR+ +  +C  +A TYT +I  +C+ G++E A 
Sbjct: 247 SPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAM 306

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV-LLEDMIEKGIRPSGETFGKLRKL 453
            V+  M      P+  T++VLING   K +  +S V +   +I +   P   TF  L   
Sbjct: 307 SVYNDMLESGTRPNTVTYNVLINGY-GKALDMESAVRMYRQLILRHCPPDVVTFSSLIDG 365

Query: 454 LIKEGREDVLKFLQEKMNLLVKEP 477
             + G+ D  K + ++M L   +P
Sbjct: 366 YCRCGQLDDAKRIWKEMGLHHIQP 389



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 3/241 (1%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S+I    K  + +    + N M  +    N  T+ +++  Y +   +E AV  +  + 
Sbjct: 289 YTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI 348

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
                 ++  F+ L+   C+   +  A+ I+  M    I P+  T+SI++    K     
Sbjct: 349 LRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSA 408

Query: 218 RAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            A +I RE+ + T   P    Y  ++D+LCK G+VDEA  IV  M    C P  + Y++L
Sbjct: 409 EALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTIL 468

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  + ++ RI +A+  F +M + G   D    N+ +    KA     V +++   +  G+
Sbjct: 469 IIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGL 528

Query: 337 A 337
           A
Sbjct: 529 A 529


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 173/350 (49%), Gaps = 5/350 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y+++I+SL K +      DL + M  KR+  +V T+  ++     V +++EAV 
Sbjct: 201 QPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVG 260

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK--TYSILLEGW 210
            FN M    +  ++  FN L+  LCK   ++KA+ +   M  + + DS   TY+ L++G+
Sbjct: 261 LFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGV-DSNIVTYNSLMDGY 319

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                  +A  +F  M   G  PD+ +Y IM++ LCK   VDEA+ + K M S    P +
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNT 379

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+ L+       RI DA D   EM   G  ADV  Y++L+ A CK ++      ++  
Sbjct: 380 VTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITK 439

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADADTYTMMIKMFCQGGE 389
           +  +G+ PN  T  I+++GL   G   +A  V++  +IK    D   Y +M+   C+ G 
Sbjct: 440 IKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGL 499

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
            ++A  +   M+    IP   T+  L+  L +      +  LL +MI +G
Sbjct: 500 FDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 155/311 (49%), Gaps = 2/311 (0%)

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEI-FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           V  N+  +N ++ +LCK K V  A ++  + +  R  PD  TY+ L+ G      L  A 
Sbjct: 200 VQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAV 259

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +F +M+     PD+ T+ I+VD LCK G + +A  ++  M           Y+ L+  Y
Sbjct: 260 GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
            +  +   A   F  M + G+  DV  Y+ +I   CK         + K+M+SK +APN+
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNT 379

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T N +++GL+  G   +A+ +   M    + AD  TY+ ++   C+  +++KA  +   
Sbjct: 380 VTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITK 439

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           +K +   P+++T+++L++GLC  G + D+  + +D++ KG     + +  +   L KEG 
Sbjct: 440 IKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGL 499

Query: 460 EDVLKFLQEKM 470
            D    L  KM
Sbjct: 500 FDEALSLVSKM 510



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 3/338 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDR 195
           I+    ++     A+     M+   +  +L  FN L++  C   ++  A  +     K  
Sbjct: 70  ILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLG 129

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F PD+ T + L++G   +  +  A     +++  G + D V+YG +++ LCK G    AL
Sbjct: 130 FHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAAL 189

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            +++ +D  + +P   +Y+ ++ +   +  +  A D   EM    I  DV  Y  LI   
Sbjct: 190 QVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGC 249

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
               + K    +   M  K + P+  T NI+++GL   GE  +A  V   MIK   +++ 
Sbjct: 250 LIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNI 309

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  ++  +    +  KA  V+  M  +   P + ++S++INGLC   +V ++  L ++
Sbjct: 310 VTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKE 369

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           M  K + P+  T+  L   L+K GR  D    + E  N
Sbjct: 370 MHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHN 407



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 125/254 (49%), Gaps = 2/254 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVE 148
           +Q  + ++  Y+S+++    ++Q      + N M R     +V+++ I++    + + V+
Sbjct: 302 KQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVD 361

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILL 207
           EAV  F  M    +  N   +N L+  L K   +  A ++ + M +R  P D  TYS LL
Sbjct: 362 EAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLL 421

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           +   K+  + +A  +  ++ D G  P+I TY I+VD LCK GR+ +A  + + +      
Sbjct: 422 DALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYH 481

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
               +Y+V+V+    E   ++A+    +ME NG + D   Y  L+ A  + +K     ++
Sbjct: 482 LDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKL 541

Query: 328 LKDMNSKGVAPNSR 341
           L++M  +G A  S 
Sbjct: 542 LREMIVQGSAVGSN 555



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 3/231 (1%)

Query: 232 NP--DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           NP   I  +  ++  L K      A+   K M+    +P  F +++L++ +     +  A
Sbjct: 59  NPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFA 118

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
                ++ K G   D      LI   C   K +       D+ +KG   +  +   ++NG
Sbjct: 119 FSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLING 178

Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   GET  A +V R++   L + +   Y  +I   C+   +  A  +   M +KR  P 
Sbjct: 179 LCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPD 238

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           + T++ LI G    G + ++  L   M+ K I+P   TF  L   L KEG 
Sbjct: 239 VVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGE 289



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 344 NIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N IL+ L+       A    ++M +K  + D  T+ ++I  FC  G L  AF V   +  
Sbjct: 68  NKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFK 127

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
             F P   T + LI GLC  G V ++    +D+I KG      ++G L   L K G    
Sbjct: 128 LGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRA 187

Query: 463 LKFLQEKMNLLVKEP 477
              +  K++ L+ +P
Sbjct: 188 ALQVLRKIDGLLVQP 202


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 23/394 (5%)

Query: 94  EHSVRAYHSMIESLAKIRQYQ----IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE 149
           E  +  Y+S+I  L    +      ++ +LV   R     N  T+  ++    R +++++
Sbjct: 77  EPDLVTYNSLIHGLCMANRMDDAGLVLQELV---RNGFAPNHITYSTLVIWNCRRRRLDQ 133

Query: 150 AVYTFNVMQKYGVTQNLAAF----NGLLSALCKSK--NVRKAQEIFDCMKDRFIPDSKTY 203
           A      M   G   NL  +     G   A C+S     R   E+ +  +   IPD  TY
Sbjct: 134 ARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGR---IPDVVTY 190

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           +  + G  K   L +  E+  EM   G  PD+VT+  ++  LCKA R+D+A  + K M  
Sbjct: 191 NTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLE 250

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE---MEKNGILADVAMYNALIGAFCKANK 320
             C P S  YS+++      NR+ D VD  LE     K G + +V  +NA IGA C++ K
Sbjct: 251 RGCVPDSLTYSIMLDNLSRANRL-DTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGK 309

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYT 378
           F     +L  M   G  PN  + N +++GL   G  D+A+++ R+M+    C+ D   + 
Sbjct: 310 FPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFN 369

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRF-IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +I  FC+ G L +A ++   MK K   +P + T++ LI+G    G +  + +LL++M  
Sbjct: 370 TLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQA 429

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
            G +P+  T+  L     K G  +  + L ++M+
Sbjct: 430 VGCKPNVVTYAALINGYAKHGMYEEAESLFDEMS 463



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 178/413 (43%), Gaps = 63/413 (15%)

Query: 82  CFFKWAEKQ-QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140
           C F + E + Q+  +  R    MIES                    R+ +V T+   +  
Sbjct: 156 CIFGFCEARCQSSRYECRDGDEMIES-------------------GRIPDVVTYNTFISG 196

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPD 199
             +  K+++ +     M + G+  ++  F  ++S LCK+  +  A ++F  M +R  +PD
Sbjct: 197 LCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 256

Query: 200 SKTYSILLEGWGKDPNL-------------------------------------PRAREI 222
           S TYSI+L+   +   L                                     P A+ I
Sbjct: 257 SLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNI 316

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYSVLVHTYG 281
              M+++G  P++++Y  ++D LCK+G VD+A  + + M DS  C+P    ++ L+  + 
Sbjct: 317 LLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFC 376

Query: 282 VENRIEDAVDTFLEME-KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              R+  A    +EM+ KN  + DV  YN LI    K    K    +L++M + G  PN 
Sbjct: 377 KAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNV 436

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T   ++NG    G  +EA  +F  M  K C  D  TY  ++  F + G + KA  V++ 
Sbjct: 437 VTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQ 496

Query: 400 MKLKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           +K K     P   T+ +LI+G C          LL++M  +G      T+  L
Sbjct: 497 LKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVL 549



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 171/351 (48%), Gaps = 12/351 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLV---NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           Y  M+++L++  +   + +++    AM+   ++ V T    +    R  K   A      
Sbjct: 260 YSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLG 319

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PDSKTYSILLEGWGKDP 214
           M + G   NL ++N ++  LCKS NV  A ++   M D     PD   ++ L+ G+ K  
Sbjct: 320 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAG 379

Query: 215 NLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            L +A ++  EM     C PD+VTY  ++D   K G + +A  +++ M +  C+P    Y
Sbjct: 380 RLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTY 439

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA---NKFKNVYRVLKD 330
           + L++ Y      E+A   F EM   G   D+  YN ++ AF KA   +K + VY+ LK+
Sbjct: 440 AALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKN 499

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGE 389
             S   +P++ T  I+++G     +T++   + + M  +    D+ TY ++I    +  E
Sbjct: 500 KTSY-CSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEE 558

Query: 390 L-EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +  KA  V++ M  +  +PS   F+ L+      G V+ +  ++++M EKG
Sbjct: 559 VPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKG 609



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 137/280 (48%), Gaps = 13/280 (4%)

Query: 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           TY+ L++G  K  +L  A+ + ++M D GC P++VTY  ++D LCKA R  +A+  VK M
Sbjct: 12  TYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRM 71

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
             + C P    Y+ L+H   + NR++DA     E+ +NG   +   Y+ L+   C+  + 
Sbjct: 72  LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRL 131

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNII--LNGLIGRGET--DEAYRVFRRMIKLCEA----D 373
                ++++M  +G       CN++  ++ + G  E     +    R   ++ E+    D
Sbjct: 132 DQARGLIREMILRG-----SVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPD 186

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             TY   I   C+ G+L+K  ++ + M      P + TF  +I+GLC    + D+  + +
Sbjct: 187 VVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFK 246

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            M+E+G  P   T+  +   L +  R D +  + E M  +
Sbjct: 247 GMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAM 286



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 156/355 (43%), Gaps = 41/355 (11%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPN 215
           M   G   ++  +  L+  LCKS ++  AQ +   M D    P+  TY+ L++G  K   
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A +  + M+ +GC PD+VTY  ++  LC A R+D+A  +++ +      P    YS 
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 276 LVHTYGVENRIEDA-------------------VDTFL------------------EMEK 298
           LV       R++ A                   +D                     EM +
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIE 180

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
           +G + DV  YN  I   CKA K      +L++M+  G+ P+  T   I++GL      D+
Sbjct: 181 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDD 240

Query: 359 AYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPSMHTFSVL 415
           A++VF+ M+ + C  D+ TY++M+    +   L+   +V ++M+  +   +  ++T +  
Sbjct: 241 AFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAF 300

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I  LC  G    +  +L  MIE G  P+  ++  +   L K G  D    L  KM
Sbjct: 301 IGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 355


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 181/352 (51%), Gaps = 4/352 (1%)

Query: 96  SVRAYH-SMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153
           + R  H S +E+  K+R++     ++  MR +   LN  T+ +++    R   VEEA   
Sbjct: 220 AARGRHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 279

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGK 212
              M+ YG+  +   +  L++ LCKS+   +A+ + D M      P+   Y+ L++G+ +
Sbjct: 280 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 339

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           + N   A ++ +EMV  G  P+ +TY  +V  LCK G++D A  ++K M     RP +  
Sbjct: 340 EGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTIT 399

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y++++  +   +  +DA     EME  GI  +V  Y+ +I   C++ + +    +L++M 
Sbjct: 400 YNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT 459

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELE 391
           +KG+ PN+     +++G    G    A  +F +M K+    D   Y  +I    + G +E
Sbjct: 460 TKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVE 519

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           ++ K +  M+ +  +P+  T+S LI+G    G +  +  L++ M++ G++P+
Sbjct: 520 ESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 571



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 182/397 (45%), Gaps = 38/397 (9%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y ++I  L K R+      L++ M    +  NV  +  ++  + R    +EA      M 
Sbjct: 295 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 354

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
             GV  N   ++ L+  LCK   + +A  +   M +D   PD+ TY++++EG  +  +  
Sbjct: 355 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKK 414

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +  EM + G +P++ TY IM+  LC++G  ++A  +++ M +   +P +F+Y+ L+
Sbjct: 415 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 474

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
             Y  E  +  A + F +M K  +L D+  YN+LI    K  + +   +    M  +G+ 
Sbjct: 475 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 534

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRM------------IKLCEA------------- 372
           PN  T + +++G +  G+ + A ++ +RM            I L E+             
Sbjct: 535 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 594

Query: 373 -----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                      D   Y ++I      G +E AF+V   ++    +P +H +S LI+GLC 
Sbjct: 595 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 654

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
                 +  +L++M +KG+ P+   +  L   L K G
Sbjct: 655 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 691



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 164/376 (43%), Gaps = 39/376 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+ I++    +  + E+A      M   G+  N   +  L+S  C+  NV  A EIF
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 490

Query: 190 DCM-KDRFIPDSKT-----------------------------------YSILLEGWGKD 213
           D M K   +PD                                      YS L+ G+ K+
Sbjct: 491 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 550

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            +L  A ++ + M+DTG  P+ V Y  +++   K+  +++     KSM        + IY
Sbjct: 551 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 610

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
            +L+H       +E A      +EKNG + DV +Y++LI   CK    +  + +L +M+ 
Sbjct: 611 GILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSK 670

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KGV PN    N +++GL   G+   A  VF  ++ K    +  TYT +I   C+ G++  
Sbjct: 671 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISN 730

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           AF ++  M      P    +SVL  G    G +  +  L+E+M  +G   S  +F  L  
Sbjct: 731 AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVD 789

Query: 453 LLIKEGR-EDVLKFLQ 467
              K G+ ++ LK L 
Sbjct: 790 GFCKRGKMQETLKLLH 805



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 159/335 (47%), Gaps = 2/335 (0%)

Query: 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RF 196
           +  Y +V++ + A      M++ G   N   +N L++ LC+S  V +A      M+D   
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 288

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           +PD  TY  L+ G  K      A+ +  EM      P++V Y  ++D   + G  DEA  
Sbjct: 289 VPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFK 348

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++K M +   +P    Y  LV       +++ A     +M ++    D   YN +I    
Sbjct: 349 MIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHF 408

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADAD 375
           + +  K+ +R+L +M + G++PN  T +I+++GL   GE ++A  +   M  K  + +A 
Sbjct: 409 RHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAF 468

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
            Y  +I  +C+ G +  A +++  M     +P ++ ++ LI GL   G V +S      M
Sbjct: 469 VYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM 528

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            E+G+ P+  T+  L    +K G  +  + L ++M
Sbjct: 529 QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 563



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 22/337 (6%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           ML+   + I++   +    +E A    + ++K G   ++  ++ L+S LCK+ +  KA  
Sbjct: 604 MLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 663

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           I D M  + + P+   Y+ L++G  K  ++  AR +F  ++  G  P+ VTY  ++D  C
Sbjct: 664 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC 723

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           K G +  A  +   M +T   P +F+YSVL         +E A+    EM   G  A ++
Sbjct: 724 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 782

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR- 365
            +N L+  FCK  K +   ++L  +  +G+ PN+ T   I++GL   G+  E + +F   
Sbjct: 783 SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 842

Query: 366 ------------------MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
                             MI   +   D    MI+  C+ G L+KA  +   +  K    
Sbjct: 843 QQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 902

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IRPS 443
              ++  +++ LC KG +S++  LL++M ++G ++P+
Sbjct: 903 GCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPT 939



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 159/362 (43%), Gaps = 2/362 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S+I  L+K+ + +        M+ + +L  E T+  ++  Y +   +E A      M 
Sbjct: 505 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 564

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLP 217
             G+  N   +  LL +  KS ++ K    F  M D+ +  D++ Y IL+       N+ 
Sbjct: 565 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 624

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A  +   +   G  PD+  Y  ++  LCK    ++A GI+  M      P    Y+ L+
Sbjct: 625 AAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALI 684

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337
                   I  A + F  +   G++ +   Y +LI   CK     N + +  +M + G+ 
Sbjct: 685 DGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGIT 744

Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
           P++   +++  G    G+ ++A  +   M     A   ++  ++  FC+ G++++  K+ 
Sbjct: 745 PDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLL 804

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             +  +  +P+  T   +I+GL + G +S+   +  ++ +K    +   F  L   +I +
Sbjct: 805 HVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQ 864

Query: 458 GR 459
           G+
Sbjct: 865 GK 866



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412
           R      + V +R ++   A    +   ++ +C+  E + A KV   M+ +    +  T+
Sbjct: 202 RSGHGSQHSVLQRAVEGSAARG-RHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTY 260

Query: 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +VLI GLC  G V ++    +DM + G+ P G T+G L   L K  R +  K L ++M+
Sbjct: 261 NVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 319


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 175/338 (51%), Gaps = 6/338 (1%)

Query: 125 TKRMLNVETFC-----IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           T+R LN E+ C      ++    + Q +E+++ +F +M   G + +  +FN  L  L KS
Sbjct: 27  TQRNLNSESVCGRPRDAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKS 86

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
            N+ +    F     R   D  ++ I ++ + ++ N+ +  E+  +M   G +P++  Y 
Sbjct: 87  GNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYT 146

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           I+++  C+ G +D+A  +   MD        +IY+++++ +  +   +D  + + +M+  
Sbjct: 147 ILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLV 206

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+L ++  YN+LI  +C+  K    ++V  +++ +GVA N+ T NI++ GL  +G+  +A
Sbjct: 207 GVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKA 266

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             +  RM +        T+ M++   C  G+L+KA    + +KL    P++ T+++LI+G
Sbjct: 267 EGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISG 326

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456
               G  S    L+ +M ++GI PS  T+  L    ++
Sbjct: 327 FSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/430 (21%), Positives = 197/430 (45%), Gaps = 40/430 (9%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           + +  S  ++++ ++ LAK       W        +   +V +F I ++ +     V + 
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKG 126

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM------------------ 192
                 M+  GV+ N+  +  L+ A C++ ++ +A+ +F  M                  
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 193 -------KDRF-----------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
                  KD F           +P+  TY+ L+  + +D  L  A ++F E+   G   +
Sbjct: 187 FFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACN 246

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
            VTY I++  LC+ G+V +A G+++ M      PT+  +++L+       +++ A+    
Sbjct: 247 AVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLE 306

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           +++  G+   +  YN LI  F K      V  ++++M  +G++P+  T  I++N  +   
Sbjct: 307 KLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSD 366

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
           + ++AY +F  M ++    D  TY ++I   C  G + +A K++K M      P+   ++
Sbjct: 367 DIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYN 426

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-DVLKFLQEKMNL 472
            +ING C +     +   LE+M++ G+ P+  ++    ++L K+G+  +  + L+E    
Sbjct: 427 TMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEA 486

Query: 473 LVKEP--LCD 480
            +K P  LC 
Sbjct: 487 GLKPPESLCS 496



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 3/269 (1%)

Query: 78  TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCI 136
           +LAF  F    K+    ++V  Y+ +I  L +  Q      L+  M+   +     TF +
Sbjct: 229 SLAFKVFDEISKRGVACNAV-TYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNM 287

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           +M       ++++A+     ++  G+   L  +N L+S   K  N     E+   M+DR 
Sbjct: 288 LMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRG 347

Query: 197 IPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           I  SK TY+IL+  + +  ++ +A E+F  M   G  PD  TYG+++  LC  G + EA 
Sbjct: 348 ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + KSM     +P   IY+ +++ Y  E     A+    EM KNG+  +VA Y + I   
Sbjct: 408 KLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQIL 467

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           CK  K     R+LK+M   G+ P    C+
Sbjct: 468 CKDGKSIEAKRLLKEMTEAGLKPPESLCS 496


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 179/365 (49%), Gaps = 2/365 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
           Y+ +I  LA+  + +    LV+ MR  +  +  TF  ++  Y     VE+A      M+ 
Sbjct: 271 YNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMEN 330

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPR 218
            G+   +  +N ++  + +S NV  A+  F  M+    +PD  TY+ L+ G+ K  NL  
Sbjct: 331 EGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKE 390

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  +F ++   G  P ++TY I++D  C+ G ++EA    + M    C+P    Y++L++
Sbjct: 391 ALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMN 450

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
                  +    + F EM   G+  D   YN  I A          +++ + M S+G++ 
Sbjct: 451 GSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISS 510

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           ++ T NI L+GL   G   +AY ++ +M+    + D  TYT +I   C+ G L +A  ++
Sbjct: 511 DTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIF 570

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
             M +    PS  T++V I+  C +G +  +    + M+E+G+RP+  T+  L   L + 
Sbjct: 571 DGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRM 630

Query: 458 GREDV 462
           GR ++
Sbjct: 631 GRTNL 635



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            V T+  I+    R   VE A   F  M+  G+  +L  +N L++  CK+ N+++A  +F
Sbjct: 336 TVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLF 395

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
            D  +    P   TY+ILL+G+ +  +L  AR   +EMV+ GC PD+ TY I+++   K 
Sbjct: 396 GDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKV 455

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
             +         M S   +P  F Y+  +    +     +A      M   GI +D   Y
Sbjct: 456 RNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTY 515

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N  +   CK+   K+ Y +   M S G+ P+  T   +++    RG   EA  +F  M +
Sbjct: 516 NIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLV 575

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                 A TYT+ I  +C+ G L  A+  ++ M  +   P+  T++VLI+ LC  G  + 
Sbjct: 576 SGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNL 635

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           +     +M+E+G+ P+  T+  L     KEG  E+ ++   E
Sbjct: 636 AYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSE 677



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 164/348 (47%), Gaps = 3/348 (0%)

Query: 123 MRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181
           MR   +L ++ T+  ++  Y +   ++EA++ F  +++ G+  ++  +N LL   C+  +
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD 422

Query: 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
           + +A+     M ++   PD  TY+IL+ G  K  NL   RE F EM+  G  PD   Y  
Sbjct: 423 LEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNT 482

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
            +      G   EA  + + M S      +  Y++ +        ++DA   +++M  +G
Sbjct: 483 RISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG 542

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           +  D   Y  LI A C+  + +    +   M   G+ P++ T  + ++    RG    AY
Sbjct: 543 LQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAY 602

Query: 361 RVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
             F++M++     +  TY ++I   C+ G    A++ +  M  +   P+ +T+++LI+G 
Sbjct: 603 GWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGN 662

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467
           C +G   ++  L  +M + GI P   T   L K   +   +  +++++
Sbjct: 663 CKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQYME 710



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 113 YQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165
           Y  + DL  A R K+ +       +V T+ I+M    +V+ +      F+ M   G+  +
Sbjct: 417 YCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPD 476

Query: 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFR 224
             A+N  +SA     +  +A ++ + M  R I  D+ TY+I L+G  K  NL  A  ++ 
Sbjct: 477 CFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWM 536

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           +MV  G  PD +TY  ++   C+ GR+ EA  I   M  +   P++  Y+V +H Y    
Sbjct: 537 KMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRG 596

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            +  A   F +M + G+  +   YN LI A C+  +    Y+   +M  +G++PN  T  
Sbjct: 597 NLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYT 656

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQG 387
           ++++G    G  +EA R++  M +     D  T+  + K F +G
Sbjct: 657 LLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEG 700



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 12/235 (5%)

Query: 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV--CRPTSFIYSVLV 277
           R ++ EM+  G  P IVTY  ++D   + GRVD+A  +++ M++    C P+   Y+V++
Sbjct: 216 RSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVI 275

Query: 278 HTYGVENRIEDAVDTF--LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +    +  +E A      + M K    A    +N LI  +      +    +  +M ++G
Sbjct: 276 NGLARKGELEKAAQLVDRMRMSKK---ASAFTFNPLITGYFARGSVEKAGALQLEMENEG 332

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + P   T N I++G+   G  + A   F  M  +    D  TY  +I  +C+ G L++A 
Sbjct: 333 IVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEA- 391

Query: 395 KVWKYMKLKR--FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            +W +  LKR    PS+ T+++L++G C  G + ++    ++M+E+G +P   T+
Sbjct: 392 -LWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTY 445



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 2/178 (1%)

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPNS 340
           E R +D    + EM + GI   +  YN L+ +F +  +     ++L++M ++  G  P+ 
Sbjct: 209 EARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSD 268

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400
            T N+++NGL  +GE ++A ++  RM    +A A T+  +I  +   G +EKA  +   M
Sbjct: 269 VTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEM 328

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           + +  +P++ T++ +I+G+   G V  + +   +M   G+ P   T+  L     K G
Sbjct: 329 ENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAG 386



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F EM  +G+   +   N ++ A     ++ ++  V  +M   G+ P+  T N +L+   
Sbjct: 183 AFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFF 242

Query: 352 GRGETDEAYRVFRRM---IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
             G  D+A ++ R M      C     TY ++I    + GELEKA ++   M++ +   S
Sbjct: 243 REGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKA-S 301

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV--LKFL 466
             TF+ LI G   +G V  +  L  +M  +GI P+  T+  +   + + G  +   +KF+
Sbjct: 302 AFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFV 361

Query: 467 QEK-MNLL 473
           + + M LL
Sbjct: 362 EMRAMGLL 369


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 172/352 (48%), Gaps = 3/352 (0%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           N++  V +Y  +I++L K R+     DL   M+ + M   V ++  ++  +    K EEA
Sbjct: 237 NFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEA 296

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEG 209
              FN M   GV  N+  FN L+  LCK   V +A+++ + M  R  +P+  TY+ L+EG
Sbjct: 297 KRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 356

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           +    +L  ARE+F  M   GC PD++ Y ++++  CK  +V+EA+ +   M     RP 
Sbjct: 357 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPD 416

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y  L+       ++ DA   F  M+  GI  D+ +Y   +   CK         +  
Sbjct: 417 VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFN 476

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
            + S  +  +    N +++GL   G+ + A+ +F ++ +   + D  TY +MI  FC+GG
Sbjct: 477 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGG 536

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           ++ KA  +++ M+     P   T++ LI G  +   +     LL  M+++ +
Sbjct: 537 QVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDV 588



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/506 (23%), Positives = 214/506 (42%), Gaps = 63/506 (12%)

Query: 27  PSTEALDAAKSISKIMLSSPKVV-----LDTALDQSGIRVSPE------IVEDVLEKFRN 75
           PS  ++      S +   SP +        +A+    + VSP+        +  L  F +
Sbjct: 9   PSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLH 68

Query: 76  -------AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128
                    T AF FF       N    + ++  ++  LAKI+ Y  ++ L N MR   +
Sbjct: 69  NCKTGNITATQAFQFFHLM-MYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGI 127

Query: 129 ------LNVETFCI---------------IMRK--------YARV-------QKVEEAVY 152
                 LN+   C+               I+R+        Y  +        ++ +A  
Sbjct: 128 SPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAAL 187

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-------RFIPDSKTYSI 205
            F  MQK G T N   +  L+  LC++ N+  A ++   M +        F P   +YSI
Sbjct: 188 LFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSI 247

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +++   KD     AR++F EM   G  P +++Y  ++   C  G+ +EA  +   M +  
Sbjct: 248 IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG 307

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
            +P    ++VL+     E ++ +A D    M + GI+ ++  YN+LI  FC      +  
Sbjct: 308 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAR 367

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMF 384
            +   M SKG  P+     +++NG     + +EA +++  M+++ +  D  TY  ++   
Sbjct: 368 ELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGL 427

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
            QGG++  A K++  MK+      ++ + + +NGLC  G + ++  L   +    I+   
Sbjct: 428 FQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDI 487

Query: 445 ETFGKLRKLLIKEGREDVLKFLQEKM 470
           E F  L   L K G+ +    L EK+
Sbjct: 488 ECFNCLIDGLCKAGKLETAWELFEKL 513



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 2/250 (0%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           Q+    ++  Y+S+IE    +       +L  +M +K    +V  + +++  Y +  KVE
Sbjct: 340 QRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVE 399

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILL 207
           EA+  +N M + G   ++  +  LL+ L +   V  A+++F  MK   IP D   Y I L
Sbjct: 400 EAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFL 459

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G  K+  L  A E+F ++       DI  +  ++D LCKAG+++ A  + + +     +
Sbjct: 460 NGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQ 519

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P    Y++++H +    ++  A   F +MEKNG   D   Y  LI  F ++ K + V  +
Sbjct: 520 PDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVEL 579

Query: 328 LKDMNSKGVA 337
           L  M  + V+
Sbjct: 580 LHMMVQRDVS 589



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 2/214 (0%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E  V  Y  +I    K  + +    L N M +  +  +V+T+  ++    +  KV +A  
Sbjct: 379 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 438

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWG 211
            F VM+ YG+  +L  +   L+ LCK+  + +A E+F+ +K   I  D + ++ L++G  
Sbjct: 439 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLC 498

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K   L  A E+F ++      PD+VTY IM+   C+ G+V +A  + + M+   C P   
Sbjct: 499 KAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKI 558

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
            Y+ L+  +    ++E  V+    M +  +  DV
Sbjct: 559 TYATLIRGFFESKKLEKVVELLHMMVQRDVSLDV 592



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 144/330 (43%), Gaps = 46/330 (13%)

Query: 82  CFFKWAEKQ--------QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVE 132
           C  KW E +        Q  + +V  ++ +I+ L K  +     DL+  M  + ++ N+ 
Sbjct: 289 CGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLL 348

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  +  V  +  A   F  M   G   ++  +  L++  CK+  V +A ++++ M
Sbjct: 349 TYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGM 408

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            +    PD KTY  LL G  +   +  A+++F  M   G   D+  YGI ++ LCK G +
Sbjct: 409 LQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCL 468

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
            EA+                                   + F +++   I  D+  +N L
Sbjct: 469 FEAM-----------------------------------ELFNKLKSYNIKLDIECFNCL 493

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC 370
           I   CKA K +  + + + +  + + P+  T NI+++     G+  +A  +F++M K  C
Sbjct: 494 IDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGC 553

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
             D  TY  +I+ F +  +LEK  ++   M
Sbjct: 554 TPDKITYATLIRGFFESKKLEKVVELLHMM 583



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 35/168 (20%)

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
           ++ +  L+    K   +  V+ +   M   G++P+  T NI+LN L       E   V  
Sbjct: 96  LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMA 155

Query: 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
            +++                                  + +IP + T++ LI GLC +  
Sbjct: 156 GILR----------------------------------RGYIPDIVTYTTLIKGLCMEHR 181

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQEKMN 471
           +S + +L   M + G  P+  T+G L K L + G   + LK  QE +N
Sbjct: 182 ISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLN 229


>gi|115459468|ref|NP_001053334.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|21741854|emb|CAD41444.1| OSJNBa0019D11.15 [Oryza sativa Japonica Group]
 gi|113564905|dbj|BAF15248.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|116310729|emb|CAH67525.1| OSIGBa0131L05.6 [Oryza sativa Indica Group]
 gi|125549050|gb|EAY94872.1| hypothetical protein OsI_16672 [Oryza sativa Indica Group]
 gi|125591012|gb|EAZ31362.1| hypothetical protein OsJ_15488 [Oryza sativa Japonica Group]
 gi|215697100|dbj|BAG91094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 464

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 190/422 (45%), Gaps = 17/422 (4%)

Query: 51  DTALDQSGIRVSPEIVEDVLEK--FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLA 108
           +  L   GI  + E+ E VL      +    A  FF W+ +  + +H+  A++ +++ L 
Sbjct: 35  EAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGR--SVKHTGYAWNLLVDILG 92

Query: 109 KIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166
           K    + MWD V  M  +   ++ V TF  I   Y     + +AV  F+VM KYGV  + 
Sbjct: 93  KADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLRKAVEAFDVMGKYGVEPDA 152

Query: 167 AAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
            A N LLSA+C+ +   + AQ++F+  K    PD+ T+ ILLE W K+ N  RA+  F E
Sbjct: 153 VALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILLEAWEKEGNAQRAKSTFGE 212

Query: 226 MV-----DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           M+     D G  P    Y   +  L +  +  EAL  ++ M S  C P    ++  +   
Sbjct: 213 MIVRVGWDAGNMP---AYDAFLSTLVRGDQFGEALKFLQVMRSKGCLPGLKFFARAIDLV 269

Query: 281 GVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
             +    +++  +  M    G++ ++ MYNA+I   C         R+L +M   GV  +
Sbjct: 270 VRKRDYANSLAIWQMMISDAGLVPNLPMYNAMIDLCCSVGDTDYALRMLDEMPFNGVFAD 329

Query: 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY-TMMIKMFCQGGELEKAFKVWK 398
             T N IL GLI + +  EA      M K  +  + T     I MF +      A  VW 
Sbjct: 330 FITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAISMFSKEFNPSAAIDVWH 389

Query: 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +   +  P+  +   LI GL D G  ++     ++M++ GI     T   +++   K G
Sbjct: 390 CIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIELPQSTIDNMKRTFDKVG 449

Query: 459 RE 460
           + 
Sbjct: 450 KH 451


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 2/344 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+   F  ++  +     +  A   F  MQK G+  +      L++ LC++  +++A  +
Sbjct: 355 LDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRV 414

Query: 189 FDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              M D+ +  D  TY++L++G+ K  N+  A  +  EMV     P++VTY  + D LCK
Sbjct: 415 LQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCK 474

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G V  A  ++  M +       + Y+ L++       +E A+    EME  G   DV  
Sbjct: 475 QGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYT 534

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI   CK+ +F   + +L++M  KG+ P+  T N+++NG    G  +   ++   M+
Sbjct: 535 YTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWML 594

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K    +  TY  ++K +C    ++   +++K M  +   P+ +T+++LI G C    + 
Sbjct: 595 EKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMK 654

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           ++    ++MIEKG+R +  ++  L +LL K+ +    +   +KM
Sbjct: 655 EALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKM 698



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 163/360 (45%), Gaps = 42/360 (11%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206
           ++EA+  F  +      +N+ + N LL AL  +  ++ A + FD M     PD  TY  +
Sbjct: 240 LDEAIALFRELPD----KNVCSHNILLKALLSAGRLKDACQHFDEMSSP--PDVVTYGTM 293

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           + G+     L  A ++  EM   G   +   Y  ++ +LC  G+V +AL +++ M     
Sbjct: 294 VHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGV 353

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
              + +++ ++  +  +  +  A   F EM+K G+ AD   + ALI   C+A + K   R
Sbjct: 354 ALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADR 413

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI----------------KLC 370
           VL++M  KG+  +  T  ++++G   RG   EA+RV   M+                 LC
Sbjct: 414 VLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLC 473

Query: 371 --------------------EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
                               E +  TY  +I   C+ G LE+A ++   M+       ++
Sbjct: 474 KQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVY 533

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T++ LI+ LC  G    +  +L++M++KGI+PS  T+  L       GR +  K L E M
Sbjct: 534 TYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWM 593



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 2/243 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y ++ + L K    +   +L++ M  K + LNV T+  ++    +   +E+A+   
Sbjct: 461 NVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIM 520

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
             M+  G   ++  +  L+  LCKS    +A  +   M D+ I P   TY++L+ G+   
Sbjct: 521 TEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMS 580

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +   +++   M++    P++VTY  ++   C    +     I K M S    P    Y
Sbjct: 581 GRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTY 640

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L+  +     +++A+    EM + G+    + Y+ALI    K  KF         M +
Sbjct: 641 NILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRN 700

Query: 334 KGV 336
           +G+
Sbjct: 701 EGL 703



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 117/272 (43%), Gaps = 26/272 (9%)

Query: 45  SPKVVLDTALD-----QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA 99
           +P VV  TAL      Q  +R + E++ ++  K                     E +V  
Sbjct: 459 APNVVTYTALSDGLCKQGDVRAANELLHEMCNK-------------------GLELNVYT 499

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+S+I  L K    +    ++  M       +V T+  ++    +  + + A      M 
Sbjct: 500 YNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEML 559

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLP 217
             G+  ++A +N L++  C S  V   +++ + M ++ + P+  TY+ L++ +  D N+ 
Sbjct: 560 DKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMK 619

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
              EI++ M      P+  TY I++   CKA  + EAL   + M     R T+  YS L+
Sbjct: 620 STTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALI 679

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
                + +  +A   F +M   G+ A+  +Y+
Sbjct: 680 RLLNKKKKFSEARVFFDKMRNEGLTAEPDVYS 711


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 165/334 (49%), Gaps = 4/334 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL   G R+       VL++  N    A  FF W ++Q  ++H    Y +M+ +L + 
Sbjct: 304 EEALHNFGFRMDAYQANQVLKQMDNYAN-ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRA 362

Query: 111 RQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
           +Q+  +  L++ M +     N  T+  ++  Y R   + EA+  F  MQ+ G   +   +
Sbjct: 363 KQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTY 422

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
             L+    K+  +  A +++  M+   + PD+ TYS+++   GK  +LP A  +F EMV 
Sbjct: 423 CTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVG 482

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC P++VT+ IM+ +  KA   + AL + + M +   +P    YS+++   G    +E+
Sbjct: 483 QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEE 542

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A   F EM++   + D  +Y  L+  + KA   +  ++  ++M   G+ PN  TCN +L+
Sbjct: 543 AEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLS 602

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMI 381
             +      EAY + + M+ L       TYT+++
Sbjct: 603 TFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 636



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 151/347 (43%), Gaps = 20/347 (5%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNV-MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           VE    I+R++      EEA++ F   M  Y   Q L   +   +AL            F
Sbjct: 287 VENVSGILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANAL----------GFF 336

Query: 190 DCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             +K +  F  D  TY+ ++   G+         +  EMV  GC P+ VTY  ++    +
Sbjct: 337 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGR 396

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           A  ++EA+ + K M    C P    Y  L+  +     ++ A+D +  M+  G+  D   
Sbjct: 397 ANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFT 456

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y+ +I    KA      +R+  +M  +G  PN  T NI++         + A +++R M 
Sbjct: 457 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 516

Query: 368 KLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
               + D  TY++++++    G LE+A  V+  M+ K ++P    + +L++     G V 
Sbjct: 517 NAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVE 576

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            +    ++M+  G+RP+  T   L    ++  R      + E  NLL
Sbjct: 577 KAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHR------MSEAYNLL 617


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 3/389 (0%)

Query: 74  RNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVE 132
           RN   L  C       +Q  E SV  Y S+I+   K    +  + L   M R   + +V 
Sbjct: 392 RNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVV 451

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
              +++   +R   ++EA+  F    K G+T N   FN L+    + K  R   +++  M
Sbjct: 452 VCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILM 511

Query: 193 K-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
              + IPD  TY++L++G  +   L  A  +F +++  G +PD + Y  ++D  CK    
Sbjct: 512 GMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDP 571

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
              L I K M S    P   IY+VL++ +  E  +E+ ++   E+ K G+  D+  YN +
Sbjct: 572 ATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTM 631

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLC 370
           I  +C    F    ++ + +      PN+ T  I+++     G  D+A  +F  M+ +  
Sbjct: 632 ICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGP 691

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           E +  TY+ +I  + +    E AF++++ M   R  P++ ++S+LI+GLC KG++ ++ +
Sbjct: 692 EPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASL 751

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             +  I + + P    +G L +   K GR
Sbjct: 752 AFQCAIGRHLLPDVIAYGILIRGYCKVGR 780



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 170/381 (44%), Gaps = 41/381 (10%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           ++V  F  IM  Y RV  + +A+  +  M K G++ N+  ++ L++ LC++  V +A  +
Sbjct: 343 MDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGV 402

Query: 189 F-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F   +K    P   TYS L++G+ K  NL     ++  M+  G  PD+V   ++++ L +
Sbjct: 403 FGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSR 462

Query: 248 AGRVDEALG-------------------------------------IVKSMDSTVCRPTS 270
            G +DEAL                                      I+  M   +  P  
Sbjct: 463 QGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI--PDV 520

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
             Y+VLV     + R+++A+  F ++ K G   D  +Y  LI  FCK        ++ K 
Sbjct: 521 VTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKL 580

Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE 389
           M S G+ P+    N+++N     G  +    + R +IK   E D  TY  MI  +C    
Sbjct: 581 MQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKI 640

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
             KA K+++ +K  R  P+  TF++LI+  C  G + D+ ++   M+E+G  P+  T+  
Sbjct: 641 FSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSC 700

Query: 450 LRKLLIKEGREDVLKFLQEKM 470
           L     K    +    L EKM
Sbjct: 701 LIDGYFKTENTESAFELYEKM 721



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 186/439 (42%), Gaps = 49/439 (11%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY------- 113
           + P  +E V+ + R+  T A  FF+WAE      H V+++  +   L + R +       
Sbjct: 53  LQPAHLEPVVFQLRSNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVF 112

Query: 114 ----------QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
                     +++ +   + R         +  ++  Y R   V+ AV TF  M K GV+
Sbjct: 113 DRMVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVS 172

Query: 164 ------------------------------QNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
                                         + L  +  + ++  K   V K       + 
Sbjct: 173 ISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALV 232

Query: 194 DR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R  +P     + +L+G      +  A + F  MV +G +P++VT+  +++V CK  R+D
Sbjct: 233 ERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLD 292

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  +   M      P   IYS+L++      ++E+    F      G+  DV ++++++
Sbjct: 293 EAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIM 352

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
            A+ +         V   M  +G++PN  T +I++NGL   G   EA  VF +++K   E
Sbjct: 353 DAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLE 412

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
               TY+ +I  FC+   L   F ++  M  K  +P +   S+LINGL  +G++ ++   
Sbjct: 413 PSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRF 472

Query: 432 LEDMIEKGIRPSGETFGKL 450
               +++G+  +   F  L
Sbjct: 473 FFQAVKRGLTLNNYLFNAL 491



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 208/460 (45%), Gaps = 25/460 (5%)

Query: 31  ALDAAKSISKIMLS----SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKW 86
           A+D    +SK+ +S    +   +LD  +D   I V   I+E+  E  +  G   F F  +
Sbjct: 159 AVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDV---ILENYEEMCKGLGVYEFVFNSF 215

Query: 87  -----AEKQQNYEHS---------VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNV 131
                 EK  N+  +         +   + +++ L    Q  +  D  + M R+    N+
Sbjct: 216 LKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNL 275

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
            TF  ++  Y +  +++EA   +N+M + G+  +L  ++ L++ L ++  + +   +F  
Sbjct: 276 VTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSM 335

Query: 192 MKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
              R +  D   +S +++ + +  +L +A E++  M+  G +P++VTY I+++ LC+ GR
Sbjct: 336 ALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGR 395

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
           V EA G+   +      P+   YS L+  +     + D    +  M + G + DV + + 
Sbjct: 396 VLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSM 455

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKL 369
           LI    +        R       +G+  N+   N +++G      T +  +++  M +  
Sbjct: 456 LINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYK 515

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              D  TYT+++K   + G L++A  ++  +  K F P    +  LI+G C K   +   
Sbjct: 516 VIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGL 575

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQE 468
            + + M   GI P    +  L  +  +EG  E+VL+ L+E
Sbjct: 576 QIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLRE 615



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 65  IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124
           +V+ + E+ R    LA  FF+  +K  + +H +  Y ++I+   K R       +   M+
Sbjct: 526 LVKGLAEQGRLDEALAL-FFQLLKKGFSPDHII--YCTLIDGFCKKRDPATGLQIFKLMQ 582

Query: 125 TKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183
           +  +  ++  + +++  + R   VE  +     + KYG+  ++  +N ++   C  K   
Sbjct: 583 SNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFS 642

Query: 184 KAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
           KA ++F+ +K  R  P++ T++IL++ + KD  +  A  IF  M++ G  P+I+TY  ++
Sbjct: 643 KAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           D   K    + A  + + M      P    YS+L+     +  +E+A   F       +L
Sbjct: 703 DGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLL 762

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
            DV  Y  LI  +CK  +      +   M   G+ P+
Sbjct: 763 PDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 36/278 (12%)

Query: 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185
           K + +V T+ ++++  A   +++EA+  F  + K G + +   +  L+   CK ++    
Sbjct: 515 KVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATG 574

Query: 186 QEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG----- 239
            +IF  M+   I PD   Y++L+  + ++  +    E+ RE++  G  PDIVTY      
Sbjct: 575 LQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICG 634

Query: 240 ------------------------------IMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
                                         I++D  CK GR+D+A+ I  SM      P 
Sbjct: 635 YCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPN 694

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              YS L+  Y      E A + + +M  + +  ++  Y+ LI   CK    +      +
Sbjct: 695 ILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQ 754

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
               + + P+     I++ G    G   EA  ++  M+
Sbjct: 755 CAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHML 792



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 24/299 (8%)

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220
           G+   + +F G+   L + +    A  +FD M  +F                  NL    
Sbjct: 84  GLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQF-----------------GNLEVLG 126

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E      + G NP  V Y  ++   C+ G VD A+     M       + +  S ++   
Sbjct: 127 EFHGSFRNYGSNPSTV-YSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLL 185

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              +RI+  ++ + EM K      + +Y  +  +F K  + +      + +  +G+ P  
Sbjct: 186 IDSDRIDVILENYEEMCKG-----LGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKI 240

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKY 399
             CN IL GL    +   A   F  M++   + +  T++ +I ++C+   L++AF ++  
Sbjct: 241 VDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNL 300

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           M  K  +P +  +S+LINGL   G + +   L    + +G++     F  +    ++ G
Sbjct: 301 MIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVG 359



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 8/192 (4%)

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
           S +YS L+H Y     ++ AVDTF  M K G+       + ++     +++   +    +
Sbjct: 140 STVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYE 199

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQG 387
           +M  KG+         + N  + RGE ++     R +++  L     D    ++K  C G
Sbjct: 200 EM-CKGLG----VYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDC-NKILKGLCMG 253

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            ++  A   +  M      P++ TFS LIN  C +  + ++  L   MIEKGI P    +
Sbjct: 254 NQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIY 313

Query: 448 GKLRKLLIKEGR 459
             L   L + G+
Sbjct: 314 SILINGLFRAGK 325



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
            +Y+ L+  +C+             M+  GV+ +    + +L+ LI     D     +  
Sbjct: 141 TVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEE 200

Query: 366 MIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
           M K        Y  +   F + GE+EK     + +  +  +P +   + ++ GLC    +
Sbjct: 201 MCK----GLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQI 256

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
             +    + M+  G  P+  TF  L  +  KE R D
Sbjct: 257 GVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLD 292


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 169/349 (48%), Gaps = 15/349 (4%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           + +V  Y ++I SL K +     +DL + M  KR+  +V T+  +M     V +++EAV 
Sbjct: 116 QPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVG 175

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
            FN M    +  ++  FN L+  LCK   ++KA+ +   M K    PD  TY+ L++G+ 
Sbjct: 176 LFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYF 235

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                 +A  +F  M   G  PD+ +Y +M++ LCK   VDEA+ ++K M S    P + 
Sbjct: 236 LVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTV 295

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            YS L+       RI DA D   EM   G  ADV  YN+L+ A CK ++      +L  +
Sbjct: 296 TYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKI 355

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391
             +G+ P+  T  I+++GL   G   +A  V++              ++IK +      +
Sbjct: 356 KDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQ-------------ILLIKGYHLDSLFD 402

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           KA  +   M+     P+  TF +LI  L +  +   +  LL +MI +G+
Sbjct: 403 KALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 169/381 (44%), Gaps = 45/381 (11%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII-MRKYARVQKVEEAVYTFN 155
           +  +H++I    ++    I  DLVN       LN+   C   + +     KV+E ++  +
Sbjct: 21  INHFHTVISLSHQMELRGIQTDLVN-------LNILVNCFCHLGQVCLNDKVKETLHFHD 73

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            +   G   N  ++  L+  LCK+   R A ++   +    + P+   YS ++    KD 
Sbjct: 74  DVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDK 133

Query: 215 NLPRAREIFREMVDTGCNPDIVTY-----------------------------------G 239
            +  A +++ +M+    +PD++TY                                    
Sbjct: 134 LVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFN 193

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           I+VD LCK G + +A  ++  M      P    Y+ L+  Y +  +   A   F  M + 
Sbjct: 194 ILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARR 253

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  DV  Y+ +I   CK         +LK+M+SK +APN+ T + +++GL   G   +A
Sbjct: 254 GVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDA 313

Query: 360 YRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
           + +   M    + AD  TY  ++   C+  +++KA  +   +K +   P ++T+++L++G
Sbjct: 314 WDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDG 373

Query: 419 LCDKGIVSDSCVLLEDMIEKG 439
           LC  G + D+  + + ++ KG
Sbjct: 374 LCKNGRLKDAQEVYQILLIKG 394



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 1/236 (0%)

Query: 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284
           +++  G   + V+YG ++D LCKAG    A+ +++++D  + +P   +YS ++++   + 
Sbjct: 74  DVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDK 133

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
            + DA D + +M    I  DV  YN L+       + K    +   M  K + P+  T N
Sbjct: 134 LVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFN 193

Query: 345 IILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           I+++GL   GE  +A  V   MIK   + D  TY  ++  +    +  KA  V+  M  +
Sbjct: 194 ILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARR 253

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              P +H++SV+INGLC   +V ++  LL++M  K + P+  T+  L   L K GR
Sbjct: 254 GVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGR 309



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 25/237 (10%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVE 148
           +Q+ +  V  Y+S+++    ++Q      + N M R     +V ++ +++    + + V+
Sbjct: 217 KQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVD 276

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILL 207
           EAV     M    +  N   ++ L+  L KS  +  A ++ + M +R  P D  TY+ LL
Sbjct: 277 EAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLL 336

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV---------------- 251
           +   K+  + +A  +  ++ D G  PDI TY I+VD LCK GR+                
Sbjct: 337 DALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYH 396

Query: 252 -----DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED-AVDTFLEMEKNGIL 302
                D+AL ++  M+   C P    + +L+     EN + D AV+   EM   G+L
Sbjct: 397 LDSLFDKALSLLSKMEDNGCTPNPVTFEILIRAL-FENDMNDKAVELLREMIARGLL 452



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 7/199 (3%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA------NKF 321
           PT F +  +  +    N     +    +ME  GI  D+   N L+  FC        +K 
Sbjct: 6   PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKV 65

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMM 380
           K       D+ +KG   N  +   +++GL   GET  A +V R +   L + +   Y+ +
Sbjct: 66  KETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTI 125

Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
           I   C+   +  AF ++  M LKR  P + T++ L+ G    G + ++  L   M+ K I
Sbjct: 126 IYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNI 185

Query: 441 RPSGETFGKLRKLLIKEGR 459
           +P   TF  L   L KEG 
Sbjct: 186 KPDIYTFNILVDGLCKEGE 204


>gi|226492862|ref|NP_001141929.1| uncharacterized protein LOC100274078 [Zea mays]
 gi|194706478|gb|ACF87323.1| unknown [Zea mays]
 gi|414585156|tpg|DAA35727.1| TPA: hypothetical protein ZEAMMB73_571639 [Zea mays]
          Length = 442

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 150/308 (48%), Gaps = 5/308 (1%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI-FDCMKDR 195
           ++ + A    +++A++ F          +  +F+ L+ ALC  + V +A  + F      
Sbjct: 113 LLNRLAAANLIDDALHAFESTAASIGLCDEVSFHILVDALCDHRRVDEADHLCFGKDPPP 172

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           F P +KT+++LL GW K     R R+++ +M   G   D+ +Y I +D L K+G+  +A 
Sbjct: 173 FPPGTKTHNLLLRGWAKAHAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKAF 232

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            + K M     R  +  Y+  +H  G+   ++ AV  + +M   G   ++A YNA+I  F
Sbjct: 233 KVFKEMKQRGIRIDTVAYNTAIHAVGMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLF 292

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           CK  +FK  Y  ++ M   G  P+  T +     L       E   +F +M+ + C+   
Sbjct: 293 CKEGRFKEGYAFVQQMRKTGCKPDVLTYHCFFQYL---SRPQEVLGLFEKMLERGCQPRM 349

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
           DTY M+IK F + G L   F VWK M+ +   P    ++ LI+ L  KG+V  +    E 
Sbjct: 350 DTYVMLIKRFGRWGFLRPVFIVWKAMEEQGLSPDAFAYNALIDALLQKGMVDLARKYDEK 409

Query: 435 MIEKGIRP 442
           M+ KG+ P
Sbjct: 410 MLAKGLSP 417



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 33/245 (13%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
             +T  +++R +A+          +  M + GV ++L +++  + AL KS    KA ++F
Sbjct: 176 GTKTHNLLLRGWAKAHAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVF 235

Query: 190 DCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             MK R I  D+  Y+  +   G    +  A  ++R+MVD GC P+I TY  ++ + CK 
Sbjct: 236 KEMKQRGIRIDTVAYNTAIHAVGMAQGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKE 295

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYS--------------------------------VL 276
           GR  E    V+ M  T C+P    Y                                 +L
Sbjct: 296 GRFKEGYAFVQQMRKTGCKPDVLTYHCFFQYLSRPQEVLGLFEKMLERGCQPRMDTYVML 355

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +  +G    +      +  ME+ G+  D   YNALI A  +        +  + M +KG+
Sbjct: 356 IKRFGRWGFLRPVFIVWKAMEEQGLSPDAFAYNALIDALLQKGMVDLARKYDEKMLAKGL 415

Query: 337 APNSR 341
           +P  R
Sbjct: 416 SPKPR 420



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 119/270 (44%), Gaps = 33/270 (12%)

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D V++ I+VD LC   RVDEA  +    D     P +  +++L+  +   +        +
Sbjct: 141 DEVSFHILVDALCDHRRVDEADHLCFGKDPPPFPPGTKTHNLLLRGWAKAHAWARLRQLW 200

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
            +M++ G+  D+  Y+  + A  K+ K    ++V K+M  +G+  ++   N  ++ +   
Sbjct: 201 FDMDRRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQRGIRIDTVAYNTAIHAVGMA 260

Query: 354 GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK----------- 401
              D A R++R+M+   C+ +  TY  +IK+FC+ G  ++ +   + M+           
Sbjct: 261 QGVDSAVRLYRQMVDAGCKPNIATYNAIIKLFCKEGRFKEGYAFVQQMRKTGCKPDVLTY 320

Query: 402 --------------------LKRFI-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
                               L+R   P M T+ +LI      G +    ++ + M E+G+
Sbjct: 321 HCFFQYLSRPQEVLGLFEKMLERGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEEQGL 380

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            P    +  L   L+++G  D+ +   EKM
Sbjct: 381 SPDAFAYNALIDALLQKGMVDLARKYDEKM 410


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 174/356 (48%), Gaps = 4/356 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYT- 153
           +V +Y ++I +  +  Q+    +L+N M+ +R+  ++ T+  ++   AR     E +   
Sbjct: 168 TVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGL 227

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGK 212
           F  M+  G+  ++  +N LL A        +A+ +F  M +   +PD  TYS L++ +GK
Sbjct: 228 FAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGK 287

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L +  E+ REM   G  PDI +Y ++++   + G + EA+G+ + M +  C   +  
Sbjct: 288 LNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAAT 347

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YSVL++ YG   R +D  D FLEM+ +    D   YN LI  F +   FK V  +  DM 
Sbjct: 348 YSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMA 407

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + V PN +T   ++      G  ++A ++   M  K     +  YT +I+ F Q    E
Sbjct: 408 EENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYE 467

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +A  ++  M      P++ T++ LI+     G+  ++  +L  M E G++    +F
Sbjct: 468 EALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSF 523



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 182/379 (48%), Gaps = 4/379 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y  ++++  K+ + + + +L+  M     L ++ ++ +++  YA +  ++EA+  F 
Sbjct: 275 INTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFR 334

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            MQ  G   N A ++ LL+   K       +++F  MK     PD+ TY+IL++ +G+  
Sbjct: 335 QMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGG 394

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                  +F +M +    P++ TY  ++    K G  ++A  I+  M+     P+S  Y+
Sbjct: 395 YFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYT 454

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  +G     E+A+  F  M + G    V  YN+LI AF +   +K    +L  MN  
Sbjct: 455 GVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES 514

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           G+  +  + N ++      G+ +EA + +  M K  CE +  T   ++ ++C  G +++ 
Sbjct: 515 GLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEG 574

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            + ++ +K    +PS+  + +++        ++D+  L++ MI   +    +  G++ K 
Sbjct: 575 EEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKG 634

Query: 454 -LIKEGREDVLKFLQEKMN 471
               E    +++++ +K+N
Sbjct: 635 DFDDESNWQIVEYVFDKLN 653



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 132/278 (47%), Gaps = 3/278 (1%)

Query: 203 YSILLEGWGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           ++++ + + +  +  R+  +F+ M     C P+   + IM+ +L + G +D+   +   M
Sbjct: 101 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEM 160

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN-K 320
            S     T + Y+ +++ YG   +   +++    M++  +   +  YN +I A  +    
Sbjct: 161 PSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLD 220

Query: 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTM 379
           ++ +  +  +M  +G+ P+  T N +L     RG  DEA  VFR M +     D +TY+ 
Sbjct: 221 WEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSY 280

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +++ F +   LEK  ++ + M+    +P + +++VL+    + G + ++  +   M   G
Sbjct: 281 LVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAG 340

Query: 440 IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
              +  T+  L  L  K GR D ++ L  +M +   +P
Sbjct: 341 CVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDP 378



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/287 (18%), Positives = 118/287 (41%), Gaps = 38/287 (13%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++N E +++ Y  +I +  K   Y+    ++  M  K ++ + + +  ++  + +    E
Sbjct: 408 EENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYE 467

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSILL 207
           EA+  FN M + G    +  +N L+ A  +    ++A+ I   M +  +  D  +++ ++
Sbjct: 468 EALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVI 527

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
           E + +      A + + EM    C P+ +T   ++ + C AG VDE     + + ++   
Sbjct: 528 EAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGIL 587

Query: 268 PTSFIYSVLVHTYGVENRIEDAVD------------------------------------ 291
           P+   Y +++  Y   +R+ DA +                                    
Sbjct: 588 PSVMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEY 647

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            F ++   G    +  YNAL+ A     + +   RVL + + +G+ P
Sbjct: 648 VFDKLNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKRGLFP 694


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 188/386 (48%), Gaps = 9/386 (2%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF----CIIMRKYARVQKVEEAVYT 153
             Y  +I+ L K R       LV+ M     +N++ +    CI +     V  +E+A   
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEM-VSHGINIKPYMYDCCICVMSKEGV--MEKAKAL 369

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGK 212
           F+ M   G+     A+  L+   C+ KNVR+  E+   MK R I  S  TY  +++G   
Sbjct: 370 FDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS 429

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             +L  A  I +EM+ +GC P++V Y  ++    +  R  +A+ ++K M      P  F 
Sbjct: 430 SGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+       R+++A    +EM +NG+  +   Y A I  + +A++F +  + +K+M 
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
             GV PN   C  ++N    +G+  EA   +R M+ +    DA TYT+++    +  +++
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++++ M+ K   P + ++ VLING    G +  +  + ++M+E+G+ P+   +  L 
Sbjct: 610 DAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 452 KLLIKEGREDVLKFLQEKMNLLVKEP 477
               + G  +  K L ++M++    P
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHP 695



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 211/462 (45%), Gaps = 32/462 (6%)

Query: 28  STEALDAAKSISKIMLSS---PKVVLDTALDQSGIRVSP-EIVEDVLEKFRNAGTLA--F 81
           S+  LD A +I K M++S   P VV+ T L ++ ++ S       VL++ +  G     F
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 82  CF------------------FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
           C+                  F     +   + +   Y + I    +  ++      V  M
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM 548

Query: 124 RTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           R   +L  +  C  ++ +Y +  KV EA   +  M   G+  +   +  L++ L K+  V
Sbjct: 549 RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 183 RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A+EIF  M+ + I PD  +Y +L+ G+ K  N+ +A  IF EMV+ G  P+++ Y ++
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +   C++G +++A  ++  M      P +  Y  ++  Y     + +A   F EM+  G+
Sbjct: 669 LGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           + D  +Y  L+   C+ N  +    +    N KG A ++   N ++N +   G+T+    
Sbjct: 729 VPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALINWVFKFGKTELKTE 787

Query: 362 VFRRMI-----KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           V  R++     +  + +  TY +MI   C+ G LE A +++  M+    +P++ T++ L+
Sbjct: 788 VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           NG    G  ++   + ++ I  GI P    +  +    +KEG
Sbjct: 848 NGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEG 889



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/469 (21%), Positives = 182/469 (38%), Gaps = 79/469 (16%)

Query: 59  IRVSPEIVEDVLEKFR-NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           I ++PE+V  VL   R +  +    FF W + Q+  E  + ++  +   L     ++   
Sbjct: 58  IEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKAL 117

Query: 118 DLVNAMRTKRMLNVET--------------------FCIIMRKYARVQKVEEAVYTFNV- 156
            +V  M  +     E                     F I+   Y     +EEAV+ F+  
Sbjct: 118 SVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSS 177

Query: 157 ----------------------------------MQKYGVTQNLAAFNGLLSALCKSKNV 182
                                             M +  V  ++  ++ L+ A C++ NV
Sbjct: 178 MGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNV 237

Query: 183 RKAQEIFDCMKDRF----------------------IPDSKTYSILLEGWGKDPNLPRAR 220
           +  +++    +  F                      +P   TY +L++G  K   L  A+
Sbjct: 238 QLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAK 297

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +  EM   G + D  TY +++D L K    D A G+V  M S       ++Y   +   
Sbjct: 298 SLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVM 357

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             E  +E A   F  M  +G++     Y +LI  +C+    +  Y +L +M  + +  + 
Sbjct: 358 SKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISP 417

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T   ++ G+   G+ D AY + + MI   C  +   YT +IK F Q      A +V K 
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           MK +   P +  ++ LI GL     + ++   L +M+E G++P+  T+G
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 164/376 (43%), Gaps = 46/376 (12%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEE 149
           Q      + Y  ++  L K  +     ++   MR K +  +V ++ +++  ++++  +++
Sbjct: 586 QGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A   F+ M + G+T N+  +N LL   C+S  + KA+E+ D M  + + P++ TY  +++
Sbjct: 646 ASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID 705

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-------- 260
           G+ K  +L  A  +F EM   G  PD   Y  +VD  C+   V+ A+ I  +        
Sbjct: 706 GYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASS 765

Query: 261 ---------------------------MDSTVCR---PTSFIYSVLVHTYGVENRIEDAV 290
                                      MD +  R   P    Y++++     E  +E A 
Sbjct: 766 TAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAK 825

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           + F +M+   ++  V  Y +L+  + K  +   ++ V  +  + G+ P+    ++I+N  
Sbjct: 826 ELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAF 885

Query: 351 IGRGETDEAYRVFRRMIKL------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  G T +A  +  +M         C+    T   ++  F + GE+E A KV + M   +
Sbjct: 886 LKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945

Query: 405 FIPSMHTFSVLINGLC 420
           +IP   T   LIN  C
Sbjct: 946 YIPDSATVIELINESC 961



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 38/248 (15%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           LC  G  ++AL +V+ M      P + ++S +V               F+    +G+L  
Sbjct: 107 LCNFGSFEKALSVVERMIER-NWPVAEVWSSIVR----------CSQEFVGKSDDGVL-- 153

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
              +  L   +      +    V        + P    C ++L+ L+     D  + V++
Sbjct: 154 ---FGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYK 210

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELE---------------------KAFKVWKYMKL 402
            M+ +    D  TY M+I   C+ G ++                      A K+ + M  
Sbjct: 211 GMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMIC 270

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           K  +P  +T+ VLI+GLC    + D+  LL +M   G+     T+  L   L+K    D 
Sbjct: 271 KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADA 330

Query: 463 LKFLQEKM 470
            K L  +M
Sbjct: 331 AKGLVHEM 338


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 189/433 (43%), Gaps = 7/433 (1%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL+   +RV   +V +V+ K      +   FF+WA K++NYEH    Y ++I  L  +
Sbjct: 45  EKALEVLMLRVDHWLVREVM-KTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVV 103

Query: 111 RQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
            QY  MW ++  M    +  V       ++R     + V +A+  F  ++         A
Sbjct: 104 EQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQA 163

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           +N ++  L       K  ++++ M  +    PD+ TYS L+  + K      A ++  EM
Sbjct: 164 YNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEM 223

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            + G  P    Y +++ +  K      AL + + M    CRP  F Y+ L+   G   RI
Sbjct: 224 KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 283

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A   F EM++ G   D    N +I    KA +  +  ++ ++M +    P+  T N I
Sbjct: 284 DEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTI 343

Query: 347 LNGLI-GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           +  L   +    E    F RM +      + TY+++I  FC+   +EKA  + + M  K 
Sbjct: 344 IKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKG 403

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
           F P    +  LI+ L        +C L +++ E     S   +  + K L K GR D   
Sbjct: 404 FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAI 463

Query: 465 FLQEKMNLLVKEP 477
            + ++MN L   P
Sbjct: 464 NMFDEMNKLGCAP 476



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 206/455 (45%), Gaps = 43/455 (9%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  + DV+    NA  +  A   F +  K +  +   +AY+SMI  L    QY+ +  
Sbjct: 124 VTPTELSDVVRMLGNAKMVRQAITIF-YQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQ 182

Query: 119 LVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M T+     +  T+  ++  + ++ + + A+   N M++ G+      +  L++  
Sbjct: 183 LYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALF 242

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  +   A  +F+ M+ ++  PD  TY+ L+ G GK   +  A   F EM   GC PD 
Sbjct: 243 FKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDT 302

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           V    M++ L KAGR+D+A+ + + M++  C P+   Y+ ++   +  ++R  +    F 
Sbjct: 303 VFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFE 362

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---------------- 338
            M+++GI      Y+ LI  FCK N+ +    +L++M+ KG  P                
Sbjct: 363 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 422

Query: 339 -------------------NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
                              ++R   +++  L   G  D+A  +F  M KL C  D   Y 
Sbjct: 423 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN 482

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++    + G L++A    + M+    IP ++++++++NGL   G    +  +L +M + 
Sbjct: 483 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 542

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            +RP   ++  +   L   G  +    L ++MN L
Sbjct: 543 TVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTL 577



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 135/283 (47%), Gaps = 7/283 (2%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI---FDCMKDRFI- 197
            +  ++++A+  F  M+      ++  +N ++ AL +SK+  +A E+   F+ MK+  I 
Sbjct: 313 GKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKS--RASEVPSWFERMKESGIS 370

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P S TYSIL++G+ K   + +A  +  EM + G  P    Y  ++D L KA R D A  +
Sbjct: 371 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 430

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
            + +       ++ +Y+V++   G   R++DA++ F EM K G   DV  YNAL+    +
Sbjct: 431 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 490

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADT 376
                     ++ M   G  P+  + NIILNGL   G    A  +   M +     D  +
Sbjct: 491 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVS 550

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           Y  ++      G  E+A K+ K M    F   + T+S ++  +
Sbjct: 551 YNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 593



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 74/264 (28%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ I++  + +  ++E+A+     M + G     AA+  L+ AL K+K    A E+F  +
Sbjct: 375 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL 434

Query: 193 KDRF------------------------------------IPDSKTYSILLEGWGKDPNL 216
           K+                                       PD   Y+ L+ G  +   L
Sbjct: 435 KENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGML 494

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A    R M + GC PDI +Y I+++ L K G    A+ ++ +M  +  RP        
Sbjct: 495 DEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRP-------- 546

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
                                      DV  YN ++GA   A  F+   +++K+MN+ G 
Sbjct: 547 ---------------------------DVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF 579

Query: 337 APNSRTCNIILNGLIGRGETDEAY 360
             +  T + IL  +   G+ D  Y
Sbjct: 580 EYDLITYSSILEAI---GKVDHEY 600


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 188/386 (48%), Gaps = 9/386 (2%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF----CIIMRKYARVQKVEEAVYT 153
             Y  +I+ L K R       LV+ M     +N++ +    CI +     V  +E+A   
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEM-VSHGINIKPYMYDCCICVMSKEGV--MEKAKAL 369

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGK 212
           F+ M   G+     A+  L+   C+ KNVR+  E+   MK R I  S  TY  +++G   
Sbjct: 370 FDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS 429

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             +L  A  I +EM+ +GC P++V Y  ++    +  R  +A+ ++K M      P  F 
Sbjct: 430 SGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+       R+++A    +EM +NG+  +   Y A I  + +A++F +  + +K+M 
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
             GV PN   C  ++N    +G+  EA   +R M+ +    DA TYT+++    +  +++
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A ++++ M+ K   P + ++ VLING    G +  +  + ++M+E+G+ P+   +  L 
Sbjct: 610 DAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 452 KLLIKEGREDVLKFLQEKMNLLVKEP 477
               + G  +  K L ++M++    P
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHP 695



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 211/462 (45%), Gaps = 32/462 (6%)

Query: 28  STEALDAAKSISKIMLSS---PKVVLDTALDQSGIRVSP-EIVEDVLEKFRNAGTLA--F 81
           S+  LD A +I K M++S   P VV+ T L ++ ++ S       VL++ +  G     F
Sbjct: 429 SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIF 488

Query: 82  CF------------------FKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123
           C+                  F     +   + +   Y + I    +  ++      V  M
Sbjct: 489 CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM 548

Query: 124 RTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           R   +L  +  C  ++ +Y +  KV EA   +  M   G+  +   +  L++ L K+  V
Sbjct: 549 RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 183 RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A+EIF  M+ + I PD  +Y +L+ G+ K  N+ +A  IF EMV+ G  P+++ Y ++
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           +   C++G +++A  ++  M      P +  Y  ++  Y     + +A   F EM+  G+
Sbjct: 669 LGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           + D  +Y  L+   C+ N  +    +    N KG A ++   N ++N +   G+T+    
Sbjct: 729 VPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTAPFNALINWVFKFGKTELKTE 787

Query: 362 VFRRMI-----KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           V  R++     +  + +  TY +MI   C+ G LE A +++  M+    +P++ T++ L+
Sbjct: 788 VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           NG    G  ++   + ++ I  GI P    +  +    +KEG
Sbjct: 848 NGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEG 889



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/469 (21%), Positives = 183/469 (39%), Gaps = 79/469 (16%)

Query: 59  IRVSPEIVEDVLEKFR-NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
           I ++PE+V  VL   R +  +    FF W + Q+  E  + ++  +   L     ++   
Sbjct: 58  IEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKAL 117

Query: 118 DLVNAMRTKRMLNVET--------------------FCIIMRKYARVQKVEEAVYTFNV- 156
            +V  M  +     E                     F I+   Y   + +EEAV+ F+  
Sbjct: 118 SVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKEYIEEAVFVFSSS 177

Query: 157 ----------------------------------MQKYGVTQNLAAFNGLLSALCKSKNV 182
                                             M +  V  ++  ++ L+ A C++ NV
Sbjct: 178 MGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNV 237

Query: 183 RKAQEIFDCMKDRF----------------------IPDSKTYSILLEGWGKDPNLPRAR 220
           +  +++    +  F                      +P   TY +L++G  K   L  A+
Sbjct: 238 QLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAK 297

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
            +  EM   G + D  TY +++D L K    D A G+V  M S       ++Y   +   
Sbjct: 298 SLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVM 357

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
             E  +E A   F  M  +G++     Y +LI  +C+    +  Y +L +M  + +  + 
Sbjct: 358 SKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISP 417

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
            T   ++ G+   G+ D AY + + MI   C  +   YT +IK F Q      A +V K 
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           MK +   P +  ++ LI GL     + ++   L +M+E G++P+  T+G
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 163/369 (44%), Gaps = 46/369 (12%)

Query: 98  RAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNV 156
           + Y  ++  L K  +     ++   MR K +  +V ++ +++  ++++  +++A   F+ 
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M + G+T N+  +N LL   C+S  + KA+E+ D M  + + P++ TY  +++G+ K  +
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS--------------- 260
           L  A  +F EM   G  PD   Y  +VD  C+   V+ A+ I  +               
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNAL 772

Query: 261 --------------------MDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
                               MD +  R   P    Y++++     E  +E A + F +M+
Sbjct: 773 INWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQ 832

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
              ++  V  Y +L+  + K  +   ++ V  +  + G+ P+    ++I+N  +  G T 
Sbjct: 833 NANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTT 892

Query: 358 EAYRVFRRMIKL------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
           +A  +  +M         C+    T   ++  F + GE+E A KV + M   ++IP   T
Sbjct: 893 KALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952

Query: 412 FSVLINGLC 420
              LIN  C
Sbjct: 953 VIELINESC 961



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 10/290 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           ++    +V  Y+ ++    +  + +   +L++ M  K +  N  T+C I+  Y +   + 
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208
           EA   F+ M+  G+  +   +  L+   C+  +V +A  IF   K      +  ++ L+ 
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774

Query: 209 GWGKDPNLPRAREIFREMVDTGCN----PDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
              K        E+   ++D   +    P+ VTY IM+D LCK G ++ A  +   M + 
Sbjct: 775 WVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNA 834

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              PT   Y+ L++ Y    R  +    F E    GI  D  MY+ +I AF K       
Sbjct: 835 NLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894

Query: 325 YRVLKDMNSK-----GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
             ++  M +K     G   +  TC  +L+G    GE + A +V   M++L
Sbjct: 895 LVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRL 944



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 38/248 (15%)

Query: 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304
           LC  G  ++AL +V+ M      P + ++S +V               F+    +G+L  
Sbjct: 107 LCNFGSFEKALSVVERMIER-NWPVAEVWSSIVR----------CSQEFVGKSDDGVL-- 153

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
              +  L   +      +    V        + P    C ++L+ L+     D  + V++
Sbjct: 154 ---FGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYK 210

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELE---------------------KAFKVWKYMKL 402
            M+ +    D  TY M+I   C+ G ++                      A K+ + M  
Sbjct: 211 GMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMIC 270

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           K  +P  +T+ VLI+GLC    + D+  LL +M   G+     T+  L   L+K    D 
Sbjct: 271 KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADA 330

Query: 463 LKFLQEKM 470
            K L  +M
Sbjct: 331 AKGLVHEM 338


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 192/410 (46%), Gaps = 6/410 (1%)

Query: 63  PEIVE--DVLEKFRNAGTLAFCFFKWAEK-QQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           P++V    V+  F   G L   +  + E   Q    +V  Y+S+I +L K +      ++
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 145

Query: 120 VNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
           +  M ++  M +  T+  I+  +    + +EA+     M+  GV  ++  +N L+  LCK
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 205

Query: 179 SKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237
           +    +A++IFD M  R + P+  TY  LL+G+     L     +   MV  G +P+   
Sbjct: 206 NGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 265

Query: 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297
           + I+V    K  +V+EA+ +   M      P +  Y  ++       R+EDA+  F +M 
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 325

Query: 298 KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357
             G+     +YN+LI   C  NK++    ++ +M  +G+  N+   N I++     G   
Sbjct: 326 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 385

Query: 358 EAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           E+ ++F  M+++  + D  TY+ +I  +C  G++++A K+   M      P   T+S LI
Sbjct: 386 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLI 445

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFL 466
           NG C    + D+ VL  +M   G+ P   T+  + + L +  R    K L
Sbjct: 446 NGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 495



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 156/307 (50%), Gaps = 5/307 (1%)

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYS 204
           E+A + F+ + + G+  ++ ++N LL+ LC     ++A E+   M D      PD  +YS
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
            ++ G+ K+ +L +    + EM+D   +P++VTY  ++  LCKA  VD+A+ ++ +M  +
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
              P    Y+ +VH +    + ++A+    +M  +G+  DV  YN+L+   CK  +    
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 212

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKM 383
            ++   M  +G+ P   T   +L G   +G   E + +   M++     +   +++++  
Sbjct: 213 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 272

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
           + +  ++E+A  V+  M+ +   P+  T+  +I  LC  G V D+ +  E MI++G+ P 
Sbjct: 273 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 332

Query: 444 GETFGKL 450
              +  L
Sbjct: 333 NIVYNSL 339



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 171/381 (44%), Gaps = 38/381 (9%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y ++++  A       M  L++ M R     N   F I++  YA+ +KVEEA+  F+
Sbjct: 228 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 287

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M++ G+  N   +  ++  LCKS  V  A   F+ M D  + P +  Y+ L+ G     
Sbjct: 288 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 347

Query: 215 NLPRAREIFREMVD-----------------------------------TGCNPDIVTYG 239
              RA E+  EM+D                                    G  PDI+TY 
Sbjct: 348 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
            ++D  C AG++DEA  ++ SM S   +P    YS L++ Y   +R++DA+  F EME +
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESS 467

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  D+  YN ++    +  +      +   +   G      T NIIL+GL     TD+A
Sbjct: 468 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDA 527

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
            R+F+ +  +  + +A T+ +MI    + G  ++A  ++        +P+  T+ ++   
Sbjct: 528 LRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 587

Query: 419 LCDKGIVSDSCVLLEDMIEKG 439
           +  +G++ +   L   M + G
Sbjct: 588 IIGQGLLEELDQLFLSMEDNG 608



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 162/352 (46%), Gaps = 2/352 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V ++  ++  + +   +++   T+N M    ++ N+  +N +++ALCK++ V KA E+ 
Sbjct: 87  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 146

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M K   +PD  TY+ ++ G+        A    ++M   G  PD+VTY  ++D LCK 
Sbjct: 147 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 206

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           GR  EA  I  SM     +P    Y  L+  Y  +  + +       M +NGI  +  ++
Sbjct: 207 GRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 266

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           + L+ A+ K  K +    V   M  +G+ PN+ T   ++  L   G  ++A   F +MI 
Sbjct: 267 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 326

Query: 369 LCEADAD-TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
              +  +  Y  +I   C   + E+A ++   M  +    +   F+ +I+  C +G V +
Sbjct: 327 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 386

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLC 479
           S  L + M+  G++P   T+  L       G+ D    L   M  +  +P C
Sbjct: 387 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 438



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 140/291 (48%), Gaps = 4/291 (1%)

Query: 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMV 242
           A+ +FD +  R IPD  +Y+ILL G   +     A E+   M D G  C PD+V+Y  ++
Sbjct: 36  ARHVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVI 95

Query: 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           +   K G +D+       M      P    Y+ ++        ++ A++    M K+G++
Sbjct: 96  NGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVM 155

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
            D   YN+++  FC + + K     LK M S GV P+  T N +++ L   G   EA ++
Sbjct: 156 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 215

Query: 363 FRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
           F  M K   + +  TY  +++ +   G L +   +   M      P+ + FS+L+     
Sbjct: 216 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAK 275

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           +  V ++ ++   M ++G+ P+  T+G +  +L K GR ED + + ++ ++
Sbjct: 276 QEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 326



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 143/314 (45%), Gaps = 19/314 (6%)

Query: 100 YHSMIESLAK---IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           ++S+I+S  K   + + + ++DL+  +  K   ++ T+  ++  Y    K++EA      
Sbjct: 371 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKP--DIITYSTLIDGYCLAGKMDEATKLLAS 428

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G+  +   ++ L++  CK   ++ A  +F  M+   + PD  TY+I+L+G  +   
Sbjct: 429 MVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRR 488

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A+E++  +  +G   ++ TY I++  LCK    D+AL + +++     +  +  +++
Sbjct: 489 TAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNI 548

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++       R ++A D F+    NG++ +   Y  +          + + ++   M   G
Sbjct: 549 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 608

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI--KLCEADADTYTMMIKMFCQGGELEKA 393
              +S   N I+  L+ RGE   A   +  MI  K    +A T ++ I +   G      
Sbjct: 609 CTVDSGMLNFIVRELLQRGEITRA-GTYLSMIDEKHFSLEASTASLFIDLLSGG------ 661

Query: 394 FKVWKYMKLKRFIP 407
               KY +  RF+P
Sbjct: 662 ----KYQEYHRFLP 671


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 169/342 (49%), Gaps = 3/342 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            V T+ +++    +V++V EA      M   GV  N+  +N L+  LC+        ++ 
Sbjct: 195 GVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLL 254

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M+  R  PD  TY+ ++ G  K   +    ++  E +  G   +++TY  +++  CK 
Sbjct: 255 EKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKG 314

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G +  AL +++ M      P    ++ ++H +    ++  A+    +M   G+  +   +
Sbjct: 315 GDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTF 374

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-I 367
           N+LI   C   + K   R+L  M   GV P+ +T  I ++ L   G+ +EA+ +F  + +
Sbjct: 375 NSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPM 434

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
           K  +A    YT ++  +CQ G+++ AF + + M  +  +P +HT++ LI+GLC    +  
Sbjct: 435 KGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDR 494

Query: 428 SCVLLEDMIEKGIRPSGETFGKL-RKLLIKEGREDVLKFLQE 468
           +  LL+ M ++GI P+  TF  L +++L  +   D  K  ++
Sbjct: 495 AIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQ 536



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 152/341 (44%), Gaps = 3/341 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVM-QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
           T+  +M    R   +  A   F  M +++G   +  ++  L+  LC +  +  A  +F  
Sbjct: 127 TYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAK 186

Query: 192 MKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
           M   +  P   TY++LL+G  K   +  A  +  EMV+ G  P++VTY  ++  LC+ GR
Sbjct: 187 MSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGR 246

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
            D+   +++ M+     P  + Y+ +VH      ++        E    G+  +V  YNA
Sbjct: 247 FDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNA 306

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL- 369
           LI  +CK    K    VL+ M    V P  +T N +++G    G+  +A     +M    
Sbjct: 307 LINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAG 366

Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429
              +  T+  +I   C  GE + A ++   M+    +P   T+++ I+ LCD+G + ++ 
Sbjct: 367 LSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAH 426

Query: 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            L   +  KGI+     +  L     + G  D    L EKM
Sbjct: 427 SLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKM 467



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 37/296 (12%)

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG------------ 239
           +K    P+  TY+ L+    K   L  AR     M + G  PD  TY             
Sbjct: 82  LKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLL 141

Query: 240 ------------------------IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
                                   I++  LC AGR+D+A  +   M    CRP    Y+V
Sbjct: 142 AAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTV 201

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+       R+ +A     EM   G++ +V  YNALIG  C+  +F +V ++L+ M  + 
Sbjct: 202 LLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQR 261

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAF 394
            +P+  T   +++GL   G+     +V    I K    +  TY  +I  +C+GG+++ A 
Sbjct: 262 HSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAAL 321

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            V + MK  R  P + TF+ +I+G C  G V  +   L  M   G+ P+  TF  L
Sbjct: 322 DVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSL 377



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 164/408 (40%), Gaps = 56/408 (13%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L V T+  ++  Y +   ++ A+    +M++  V   +  FN ++   C    V KA   
Sbjct: 299 LEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAF 358

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
              M    + P++ T++ L+ G         A  +   M + G  PD  TY I +D LC 
Sbjct: 359 LTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCD 418

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G+++EA  +   +     +  + IY+ LVH Y     I+ A     +M     + DV  
Sbjct: 419 EGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHT 478

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI   CK  +      +L  M  +G+ P + T NI++  ++   +  +A +++ +MI
Sbjct: 479 YNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMI 538

Query: 368 KL-CEADADTYTM-------------------------------------MIKMFCQGGE 389
              C+ D  TYT+                                     +IK +   G 
Sbjct: 539 SSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGL 598

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG--------------IVSDSCVLLEDM 435
            EKAF     M      P   T+S+L+N +C+K                V +   L E M
Sbjct: 599 KEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQM 658

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM---NLLVKEPLCD 480
            E    P   T+  L + L  + R + +++L  KM   ++L+ E + D
Sbjct: 659 CESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSD 706



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 2/197 (1%)

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
           R+   + +F  M K+G   +   YN LI A CK     +    L  M   G+AP++ T N
Sbjct: 70  RLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYN 129

Query: 345 IILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
            ++ GL   G    A  +F +M +   A  D  +YT++IK  C  G ++ A +V+  M  
Sbjct: 130 CLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSR 189

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
               P +HT++VL++GLC    V ++  LL +M+ KG+ P+  T+  L   L +EGR D 
Sbjct: 190 GWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDD 249

Query: 463 LKFLQEKMNLLVKEPLC 479
           +  L EKM +    P C
Sbjct: 250 VTKLLEKMEIQRHSPDC 266



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/467 (19%), Positives = 173/467 (37%), Gaps = 124/467 (26%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+++I    K    +   D++  M+  R+   V+TF  ++  +    KV +A+    
Sbjct: 301 VLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLT 360

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
            M   G++ N   FN L+S  C     + A  + D M++   +PD +TY+I ++    + 
Sbjct: 361 QMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEG 420

Query: 215 NLPRAREIF-----------------------------------REMVDTGCNPDIVTYG 239
            L  A  +F                                    +M    C PD+ TY 
Sbjct: 421 QLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYN 480

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF------ 293
            ++D LCK  R+D A+ ++  M      PT+  +++L+     + +  DA   +      
Sbjct: 481 TLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISS 540

Query: 294 -------------------------------LEMEKNGILADVAMYNALIGAFCKANKFK 322
                                          +EM + G+  DV  YNA+I A+  A   +
Sbjct: 541 GCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKE 600

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE----------AYRVFRRMI-KLCE 371
             +     M S  + P+  T +I+LN +  + ++D             R  + +  ++CE
Sbjct: 601 KAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCE 660

Query: 372 ADA----DTYTMMIKMFCQGGELEK----------------------------------- 392
           +DA     TY  +++  C    LE+                                   
Sbjct: 661 SDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYRE 720

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           A + ++ M  + F P + +  +L++GLCD G    +  +  DM+  G
Sbjct: 721 ACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMAVSIFSDMLGLG 767



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 149/374 (39%), Gaps = 60/374 (16%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y S++    ++      + L+  M ++  M +V T+  ++    +V++++ A+   + M+
Sbjct: 444 YTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMK 503

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI-----LLEGWGK 212
           K G+      FN L+  +   K    A ++++ M      PD +TY++       EG  K
Sbjct: 504 KQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATK 563

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
           + N+  A     EM + G  PD+ TY  ++     AG  ++A      M S    P    
Sbjct: 564 EENIDMA---VVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTT 620

Query: 273 YSVL------------------------------------------VHTY-----GVEN- 284
           YS+L                                          + TY     G+ N 
Sbjct: 621 YSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQ 680

Query: 285 -RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
            R+E+     L+M+ N IL D  M + L+G +C    ++      + M  +   P  ++C
Sbjct: 681 CRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSC 740

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
            ++L+GL   G+   A  +F  M+ L    D   + ++I    + G      ++   M  
Sbjct: 741 CLLLSGLCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDA 800

Query: 403 KRFIPSMHTFSVLI 416
           K+ + S  T++ L+
Sbjct: 801 KKCVASTRTYASLV 814



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 2/215 (0%)

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           +A R+   L    +M  +   P    Y+ L++ +     + DA    + M + G+  D  
Sbjct: 67  RAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTF 126

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
            YN L+   C+A        +   M  + G   +  +  I++ GL   G  D+A RVF +
Sbjct: 127 TYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAK 186

Query: 366 MIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424
           M +  C     TYT+++   C+   + +A  +   M  K  +P++ T++ LI GLC +G 
Sbjct: 187 MSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGR 246

Query: 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             D   LLE M  +   P   T+ ++   L K G+
Sbjct: 247 FDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGK 281


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 180/371 (48%), Gaps = 13/371 (3%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           QQN       ++ ++ SL K + Y  +  L   M  + +  N+    I++  + ++  + 
Sbjct: 55  QQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIP 114

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-----------RFI 197
            A      + K G   N    N L+  LC +  +     I   +KD              
Sbjct: 115 SAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENIN 174

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           PD  T++IL++G+ K+  +  A+ +   M+  G  P +VTY  ++D      +V++A  I
Sbjct: 175 PDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSI 234

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
             +M      P    YS+L++ +     +++A++   EM    I+ +V  Y++LI   CK
Sbjct: 235 FNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCK 294

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADT 376
           + K     +++ +M+ +G  PN  T + IL+ L    + D A  +  +M  +  + +  T
Sbjct: 295 SGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYT 354

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           YT++IK  CQ G+LE A KV++ + +K    +++T++V+I G CDKG+  ++  LL  M 
Sbjct: 355 YTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKME 414

Query: 437 EKGIRPSGETF 447
           + G  P+ +T+
Sbjct: 415 DNGCIPNAKTY 425



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 153/303 (50%), Gaps = 2/303 (0%)

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
           I  K+  V K+++AV  FN M    +  ++  F  L+   CK   V++A+ +   M  + 
Sbjct: 148 IHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQG 207

Query: 197 I-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
           I P   TY+ L++G+     + +A+ IF  M   G +PDI +Y I+++  CK   +DEA+
Sbjct: 208 IKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAM 267

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            ++K M      P    YS L+       +I  A+    EM   G   ++  Y++++ A 
Sbjct: 268 ELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 327

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR-MIKLCEADA 374
           CK ++  N   +L  M ++G+ PN  T  I++ GL   G+ ++A +VF   ++K    + 
Sbjct: 328 CKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNV 387

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TYT+MI+ FC  G  ++A  +   M+    IP+  T+ ++I  L  K     +  LL +
Sbjct: 388 YTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCE 447

Query: 435 MIE 437
           MIE
Sbjct: 448 MIE 450



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 182/381 (47%), Gaps = 21/381 (5%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT-KRML-------N 130
           L + F   ++K  +++  +  + + I   +    +    D+ +A+    R+L       N
Sbjct: 3   LRYGFVPVSKKFHSFQFLINTHFNFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPN 62

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           +E F  I+    + +     +Y    M+  G+  NL   N L+++ C+  ++  A  +  
Sbjct: 63  IE-FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLT 121

Query: 191 -CMKDRFIPDSKTYSILLEGW---GKDPN-------LPRAREIFREMVDTGCNPDIVTYG 239
             +K  + P++ T + L++G    GK  +       L  A ++F +M+    NPD+ T+ 
Sbjct: 122 KILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFT 181

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
           I+VD  CK GRV EA  ++  M     +P    Y+ L+  Y +  ++  A   F  M + 
Sbjct: 182 ILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQL 241

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G+  D+  Y+ LI  FCK         +LK+M+ K + PN  T + +++GL   G+   A
Sbjct: 242 GVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYA 301

Query: 360 YRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
            ++   M    +  +  TY+ ++   C+  +++ A  +   MK +   P+M+T+++LI G
Sbjct: 302 LKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKG 361

Query: 419 LCDKGIVSDSCVLLEDMIEKG 439
           LC  G + D+  + ED++ KG
Sbjct: 362 LCQSGKLEDARKVFEDLLVKG 382



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 1/239 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           V T+  +M  Y  V++V +A   FN M + GV+ ++ +++ L++  CK K + +A E+  
Sbjct: 212 VVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLK 271

Query: 191 CMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M  +  IP+  TYS L++G  K   +  A ++  EM D G  P+IVTY  ++D LCK  
Sbjct: 272 EMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 331

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           +VD A+ ++  M +   +P  + Y++L+       ++EDA   F ++   G   +V  Y 
Sbjct: 332 QVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYT 391

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            +I  FC    F     +L  M   G  PN++T  II+  L  + E + A ++   MI+
Sbjct: 392 VMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +++Y  +I    KI+      +L+  M  K+++ NV T+  ++    +  K+  A+   +
Sbjct: 247 IQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVD 306

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   G   N+  ++ +L ALCK+  V  A  +   MK++ I P+  TY+IL++G  +  
Sbjct: 307 EMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSG 366

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  AR++F +++  G N ++ TY +M+   C  G  DEAL ++  M+   C P +  Y 
Sbjct: 367 KLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYE 426

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
           +++ +   ++  E A     EM +      VA+ N LI +
Sbjct: 427 IIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIAS 466



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 60/314 (19%)

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSI 205
           V++AV  FN + +   T     FN +L +L KSK+      +   M+ R I P+    +I
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           L+  + +  ++P A  +  +++  G  P+ +T   ++  LC  G++ +   IV       
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIV------- 155

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
                              +++DAVD F +M    I  DV  +  L+  FCK  + K   
Sbjct: 156 ------------------GKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAK 197

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385
            VL  M  +G+ P   T N +++G     + ++A  +F  M +L  +             
Sbjct: 198 NVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVS------------- 244

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
                                P + ++S+LING C   ++ ++  LL++M  K I P+  
Sbjct: 245 ---------------------PDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVV 283

Query: 446 TFGKLRKLLIKEGR 459
           T+  L   L K G+
Sbjct: 284 TYSSLIDGLCKSGK 297



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
           T+   N ++DAV  F  + +         +N ++G+  K+  +  V  + + M  +G+ P
Sbjct: 36  TFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKP 95

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQG---------- 387
           N   CNI++N     G    A+ V  +++K+  + +  T   +IK  C            
Sbjct: 96  NLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIV 155

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           G+L+ A  ++  M L+   P ++TF++L++G C +G V ++  +L  M+ +GI+P   T+
Sbjct: 156 GKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTY 215

Query: 448 GKL 450
             L
Sbjct: 216 NSL 218


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 208/438 (47%), Gaps = 26/438 (5%)

Query: 58  GIRVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           G  ++  I+  VL      G  +++ FFKW E   N++HS+++  +MI +LAK +Q++  
Sbjct: 60  GSNLTSTILNQVLLNLSLDGCCVSWAFFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTA 119

Query: 117 WDLVNAMRTKRML------------------NVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
            +L+  +  +  L                  N +    ++  YA  +  ++A+  F  M+
Sbjct: 120 QNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMR 179

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLP 217
            +G   +L A   LL++L K++      +++  M +   +P+   +++L+    K  ++ 
Sbjct: 180 VHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVE 239

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
           +A ++  EM      PD+ TY  ++ + CK G   EALGI   M+     P    Y+ L+
Sbjct: 240 KAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI 299

Query: 278 HTYGVE-NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           + +  E N +E+A+     ME  G+   V  YN+++   C+  K K+  R+L +M+ + V
Sbjct: 300 YGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 359

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFK 395
            P++ TCN ++N     G+   A +V ++M++   + D  T+  +I  FC+  E++ A +
Sbjct: 360 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 419

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
               M    F PS  T+S L++   D+        L +++  KG+      +  L + L 
Sbjct: 420 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 479

Query: 456 K----EGREDVLKFLQEK 469
           K    E  E +   +Q K
Sbjct: 480 KIDKIESAERIFTLMQGK 497



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 1/198 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKT 202
           V  +EEA+    VM+  G+   +  +N +L  LC+   ++ A  + + M +R + PD+ T
Sbjct: 306 VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVT 365

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
            + L+  + K  ++  A ++ ++M++ G  PD  T+  ++   CK   VD A   +  M 
Sbjct: 366 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML 425

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
                P+   YS LV +Y  ++  E  +    E+ + G+  D+++Y ALI   CK +K +
Sbjct: 426 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 485

Query: 323 NVYRVLKDMNSKGVAPNS 340
           +  R+   M  KG+  +S
Sbjct: 486 SAERIFTLMQGKGMKGDS 503



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 148/361 (40%), Gaps = 39/361 (10%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEE 149
             ++  + A   ++ SLAK R   ++W +   M R   + N+  F +++    +   VE+
Sbjct: 181 HGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEK 240

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLE 208
           A    N M+   +  +L  +N L+S  CK     +A  I D M+   + PD  TY+ L+ 
Sbjct: 241 AEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIY 300

Query: 209 GWGKDPN------------------------------------LPRAREIFREMVDTGCN 232
           G+ ++ N                                    +  A  +  EM +    
Sbjct: 301 GFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 360

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD VT   +++  CK G +  A+ + K M     +P  F +  L+H +   + ++ A + 
Sbjct: 361 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 420

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
             EM   G     + Y+ L+ ++   +  + V R+  +++ KG+  +      ++  L  
Sbjct: 421 LFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 480

Query: 353 RGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411
             + + A R+F  M  K  + D+  YT +   + + G+   A  +   M  +R + ++  
Sbjct: 481 IDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKI 540

Query: 412 F 412
           +
Sbjct: 541 Y 541



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 2/221 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFN 155
           V  Y+S++  L +  + +    L+N M  +++      C  ++  Y ++  +  A+    
Sbjct: 328 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK 387

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE-IFDCMKDRFIPDSKTYSILLEGWGKDP 214
            M + G+  +   F  L+   CK   V  A+E +F+ +   F P   TYS L++ +    
Sbjct: 388 KMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQD 447

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           N      +  E+   G   DI  Y  ++  LCK  +++ A  I   M     +  S +Y+
Sbjct: 448 NKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYT 507

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
            L + Y    +   A D   EM+K  ++  + +Y     ++
Sbjct: 508 SLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASY 548



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 34/149 (22%)

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381
           ++  +V + M   G  P+   C ++LN L     T+  ++V+++M+++            
Sbjct: 169 QDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRV------------ 216

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
                                   +P++H F+VLI+  C  G V  +  LL +M  + I 
Sbjct: 217 ----------------------GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIF 254

Query: 442 PSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           P   T+  L  L  K+G       +Q++M
Sbjct: 255 PDLFTYNTLISLYCKKGMHYEALGIQDRM 283


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 206/455 (45%), Gaps = 43/455 (9%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  + D++    NA  +  A   F +  K +  + + +AY+SMI  L    QY+ + +
Sbjct: 153 VTPMELSDIIRMLGNAKMISKAVAIF-YQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHE 211

Query: 119 LVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M  +     +  T+  ++  + ++ + + A+   N M+  G+      +  L++  
Sbjct: 212 LYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALF 271

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  NV  A  +F+ M+ ++  PD  TY+ L+ G GK      A   F EM   GC PD 
Sbjct: 272 FKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDT 331

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           V    M++ L KAGR+D+A+ + + M +  C P+   Y+ ++   +  ++RI +    F 
Sbjct: 332 VVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFE 391

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---------------- 338
            M+ +GI      Y+ LI  FCK N+ +    +L++M+ KG  P                
Sbjct: 392 RMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 451

Query: 339 -------------------NSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYT 378
                              ++R   +++  L   G  D+A  +F  M KL C  +   Y 
Sbjct: 452 RYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYN 511

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            ++    + G L++A    + M+    IP ++++++++NGL   G    +  +L +M + 
Sbjct: 512 ALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 571

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
            I+P   ++  +   +   G  +    L ++MN+L
Sbjct: 572 AIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVL 606



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 175/401 (43%), Gaps = 6/401 (1%)

Query: 83  FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRK 140
           FF+WA K++NYEH    Y ++I  L  + QY  MW ++  M    +  V    +  I+R 
Sbjct: 105 FFRWAAKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRM 164

Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIP 198
               + + +AV  F  ++         A+N ++  L       K  E+++ M +     P
Sbjct: 165 LGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFP 224

Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
           D+ TYS L+  + K      A  +  EM D G  P    Y +++ +  K   V  ALG+ 
Sbjct: 225 DTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLF 284

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + M    CRP  F Y+ L+   G   R ++A + F EM + G   D  + N +I    KA
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKA 344

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-GRGETDEAYRVFRRMIKLCEADAD-T 376
            +  +  ++ ++M +    P+  T N I+  L   +    E    F RM     + +  T
Sbjct: 345 GRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFT 404

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y+++I  FC+    EKA  + + M  K F P    +  LI+ L        +  L +++ 
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK 464

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           E     S   +  + K L K GR D    L ++MN L   P
Sbjct: 465 ENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTP 505



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 6/336 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI--IMRKYARVQK 146
           + Q     V  Y  +I  L K  ++   ++  + MR +     +T  I  ++    +  +
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMR-REGCRPDTVVINNMINFLGKAGR 346

Query: 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFI-PDSKTYS 204
           +++AV  F  M       ++  +N ++ AL +SK+ + +    F+ MK   I P   TYS
Sbjct: 347 LDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYS 406

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
           IL++G+ K     +A  +  EM + G  P    Y  ++D L KA R D A  + + +   
Sbjct: 407 ILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKEN 466

Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
               ++ +Y+V++   G   R++DAV+ F EM K G   +V  YNAL+    +A      
Sbjct: 467 CGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEA 526

Query: 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKM 383
              ++ M   G  P+  + NIILNGL   G    A  +   M +   + DA +Y  ++  
Sbjct: 527 LTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGA 586

Query: 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
               G  E+A K+ K M +  F   + T+S ++  +
Sbjct: 587 MSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAI 622



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           AY S+I++L K ++Y I  +L   ++      +   + ++++   +  ++++AV  F+ M
Sbjct: 439 AYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM 498

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217
            K G T N+ A+N                                   L+ G  +   L 
Sbjct: 499 NKLGCTPNVYAYNA----------------------------------LMSGLARAGMLD 524

Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
            A    R M + GC PDI +Y I+++ L K G    A+ ++ +M  +  +P +  Y+ ++
Sbjct: 525 EALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVL 584

Query: 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
                    E+A     EM   G   D+  Y++++ A  K +
Sbjct: 585 GAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVD 626


>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 198/437 (45%), Gaps = 54/437 (12%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P  ++ +L K +N   L+  FF W +      H++  +  ++  L K R ++    + 
Sbjct: 66  LTPFKIQHILLKLQNDAVLSLKFFNWVQTHNPNSHTLHTHSFLLHILTKNRNFKTAQSIF 125

Query: 121 NAMRT------KRMLNVETFC--------IIMRKYARVQKVEEAVYTFNVMQKYG----- 161
           + + T      + +L+  T C         + + +A + K+  A  TF  M++YG     
Sbjct: 126 SKIITTNSNLFESLLHSYTLCNSSPLVFDTLFKTFAHMNKLRNATDTFVKMKEYGFFPTV 185

Query: 162 ------------------------------VTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
                                         ++ N+   N ++SA CK   + KA E+ + 
Sbjct: 186 ESCNAFLSSMLYLKRPELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEK 245

Query: 192 MKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAG 249
           MKD    P+  T++ L+ G+     L  A ++   M+   G  P++VT+  +++  CK G
Sbjct: 246 MKDMGLCPNVVTFNSLISGYCDKGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEG 305

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           ++ EA  +   M      P    Y+ L++ +G     E  +  F EME+N + AD+  YN
Sbjct: 306 KLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYN 365

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI   CK  K K    ++K+++   + PN+ T + ++ G   R  ++ A+ V+R M++ 
Sbjct: 366 GLILGLCKEGKTKKAAYMVKELDKGNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRS 425

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVSD 427
               + +T+ M+   FC+  + + A +V + M L+RF+ P     S + +GLC  G    
Sbjct: 426 GFSPNENTFRMLASAFCKNEDFDGAVQVLRDM-LERFMTPDSSILSEVYSGLCRCGRKQF 484

Query: 428 SCVLLEDMIEKGIRPSG 444
           + +L  ++  K + P G
Sbjct: 485 ALMLCSEIEAKRLLPQG 501



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 117/280 (41%), Gaps = 18/280 (6%)

Query: 198 PDSKT---YSILLEGWGKDPNLPRAREIFREMVDTG-------------CNPDIVTYGIM 241
           P+S T   +S LL    K+ N   A+ IF +++ T              CN   + +  +
Sbjct: 97  PNSHTLHTHSFLLHILTKNRNFKTAQSIFSKIITTNSNLFESLLHSYTLCNSSPLVFDTL 156

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
                   ++  A      M      PT    +  + +     R E  V  + +M +N I
Sbjct: 157 FKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYLKRPELVVSFYRQMRRNRI 216

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             +V   N ++ A+CK  +      VL+ M   G+ PN  T N +++G   +G    A +
Sbjct: 217 SPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLLGLALK 276

Query: 362 VFRRMI--KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           V   M+       +  T+  +I  FC+ G+L +A +V+  MKL    P++ T++ LING 
Sbjct: 277 VRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGF 336

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
              G       L E+M    ++    T+  L   L KEG+
Sbjct: 337 GQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGK 376



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKV 147
           K  N   +V  Y+++I    +    ++   L   M R K   ++ T+  ++    +  K 
Sbjct: 318 KLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKT 377

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSIL 206
           ++A Y    + K  +  N + F+ L++  C   N  +A  ++  M +  F P+  T+ +L
Sbjct: 378 KKAAYMVKELDKGNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTFRML 437

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
              + K+ +   A ++ R+M++    PD      +   LC+ GR   AL +   +++   
Sbjct: 438 ASAFCKNEDFDGAVQVLRDMLERFMTPDSSILSEVYSGLCRCGRKQFALMLCSEIEAKRL 497

Query: 267 RPTSF 271
            P  F
Sbjct: 498 LPQGF 502


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 173/369 (46%), Gaps = 40/369 (10%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN-----------------G 171
           L+V  +  I+  Y+R  K E AV  F  M + G++  L  +N                 G
Sbjct: 207 LDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILG 266

Query: 172 LL-------------------SALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
           LL                   SA  +   + +A+E F  +K + + P + TY+ LL+ +G
Sbjct: 267 LLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFG 326

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K      A  I +EM D  C PD VTY  +V    +AG  +E   ++ +M     +P + 
Sbjct: 327 KAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAV 386

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+ +++ YG   +++ A+  + +M+++G   +V  YNA++G   K ++ + + ++L DM
Sbjct: 387 TYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDM 446

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGE 389
              G APN  T N +L+    +G      RVF+ M K C  E D DT+  +I    + G 
Sbjct: 447 KVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEM-KSCGFEPDRDTFNTLITASGRCGS 505

Query: 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449
              A K++  M    F PS+ T++ L+N L  +G    +  +++DM  KG +PS  ++  
Sbjct: 506 DIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSL 565

Query: 450 LRKLLIKEG 458
           +     K G
Sbjct: 566 ILNSYAKGG 574



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 3/296 (1%)

Query: 185 AQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A ++FD +  D +  D + Y+ +L  + +     RA  IF +M ++G +P +VTY +M+D
Sbjct: 193 ASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLD 252

Query: 244 VLCKAGRV-DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL 302
           V  K GR  ++ LG++  M S       F  S ++   G E  +++A + F+ ++  G  
Sbjct: 253 VYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYA 312

Query: 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362
                YNAL+  F KA  +     ++K+M      P++ T N ++   +  G  +E   +
Sbjct: 313 PGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAAL 372

Query: 363 FRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
              M +   + +A TYT MI  + +  +++KA  ++  MK     P++ T++ ++  L  
Sbjct: 373 IDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGK 432

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           K    +   +L DM   G  P+  T+  +  +   +G    +K + ++M     EP
Sbjct: 433 KSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEP 488



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 161/349 (46%), Gaps = 7/349 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y +MI +  +  Q      L + M+      NV T+  I+    +  + EE +     M
Sbjct: 387 TYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDM 446

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRK-AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPN 215
           +  G   N   +N +LS +C +K + K  + +F  MK   F PD  T++ L+   G+  +
Sbjct: 447 KVDGCAPNRITWNTMLS-MCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGS 505

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
              A +I+ EM++ G  P + TY  +++ L + G    A  ++K M +   +P+   YS+
Sbjct: 506 DIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSL 565

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++++Y     ++       ++    I     +   LI A  K      + R  + +   G
Sbjct: 566 ILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHG 625

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTMMIKMFCQGGELEKA 393
             P+    N +L+    +   D A+ +   +I+ C  + D  TY  ++ ++ +GGE  KA
Sbjct: 626 YKPDLVVFNSMLSMFSRKNMHDRAHEIMH-LIQECGLQPDLVTYNSLMDLYARGGECWKA 684

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            ++ + ++       + +++ +I G C +G++ ++   L +MI +GIRP
Sbjct: 685 EEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRP 733



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 117/270 (43%), Gaps = 37/270 (13%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYAR----- 143
           +  +  SV  Y++++ +LA+   ++    ++  M+ K     ET + +I+  YA+     
Sbjct: 518 EAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVK 577

Query: 144 -VQKVEEAVY-----------------------------TFNVMQKYGVTQNLAAFNGLL 173
            + ++E+ +Y                              F  +QK+G   +L  FN +L
Sbjct: 578 GINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSML 637

Query: 174 SALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
           S   +     +A EI   +++    PD  TY+ L++ + +     +A EI RE+ ++G  
Sbjct: 638 SMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDK 697

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
            D+++Y  ++   C+ G + EAL  +  M S   RP    Y+  V  Y  +    +  + 
Sbjct: 698 SDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEV 757

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFK 322
              M K+    +   Y  ++  +CKA KFK
Sbjct: 758 LSYMTKHDCRPNELTYKIVVDGYCKAKKFK 787



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 37/299 (12%)

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
           +TF  ++    R     +A   ++ M + G T ++A +N LL+AL +  + R A+ +   
Sbjct: 491 DTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKD 550

Query: 192 MKDR-FIPDSKTYSILLEGWGKD-------------------PN---------------- 215
           MK++ F P   +YS++L  + K                    P+                
Sbjct: 551 MKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRA 610

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L      F+ +   G  PD+V +  M+ +  +    D A  I+  +     +P    Y+ 
Sbjct: 611 LAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNS 670

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+  Y        A +   E++ +G  +D+  YN +I  FC+        R L +M S+G
Sbjct: 671 LMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRG 730

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           + P   T N  + G   +G   E   V   M K  C  +  TY +++  +C+  + ++A
Sbjct: 731 IRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEA 789



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 128/304 (42%), Gaps = 8/304 (2%)

Query: 171 GLLSALCKSKNVRKAQEIFDCM-----KDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           G+L AL  S +  +A  +F+ +           D++   ++    G++     A ++F  
Sbjct: 140 GVLKALDLSGDCERAILLFEWLVLNLGTGNVNLDNQAVELMARILGRESQHSIASKLFDV 199

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285
           +     + D+  Y  ++    + G+ + A+ I + M+ +   PT   Y+V++  YG   R
Sbjct: 200 IPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGR 259

Query: 286 IEDAVDTFL-EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344
             + +   L EM   G+  D    + +I A  +             + S+G AP + T N
Sbjct: 260 SWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYN 319

Query: 345 IILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
            +L      G   EA  + + M    C  DA TY  ++  + + G  E+   +   M   
Sbjct: 320 ALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTEN 379

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDV 462
              P+  T++ +IN       V  +  L + M E G  P+  T+  +  +L K+ + E++
Sbjct: 380 GIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEM 439

Query: 463 LKFL 466
           +K L
Sbjct: 440 MKIL 443



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 2/177 (1%)

Query: 87  AEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQ 145
           A ++  Y+  +  ++SM+   ++   +    ++++ ++   +  ++ T+  +M  YAR  
Sbjct: 620 ALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGG 679

Query: 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYS 204
           +  +A      +Q  G   +L ++N ++   C+   + +A      M  R I P   TY+
Sbjct: 680 ECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYN 739

Query: 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
             + G+          E+   M    C P+ +TY I+VD  CKA +  EA+  V ++
Sbjct: 740 TFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTI 796


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 201/471 (42%), Gaps = 59/471 (12%)

Query: 47  KVVLDTALDQSGIR------VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAY 100
           KVV +   D  G+       ++P  V  VL + +    LAF FFKW+  +  ++HSV +Y
Sbjct: 86  KVVHNDLWDDPGLEKLFDLTLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESY 145

Query: 101 --------------------HSMIESLAKIRQYQIMWD--------------LVNAMRTK 126
                                 M+ S A    + ++W               L + +   
Sbjct: 146 CIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDL 205

Query: 127 RMLNVETFCI-----------------IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            ML     C                  ++ ++A++ K ++    F  M   G    +  +
Sbjct: 206 GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTY 265

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N ++  +CK  +V  A+ +F+ MK R  +PD+ TY+ +++G+GK   L      F EM D
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 325

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
             C PD++TY  +++  CK G++   L   + M     +P    YS LV  +  E  ++ 
Sbjct: 326 MCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQ 385

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+  +++M + G++ +   Y +LI A CK     + +R+  +M   GV  N  T   +++
Sbjct: 386 AIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALID 445

Query: 349 GLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           GL       EA  +F +M       +  +Y  +I  F +   +++A ++   +K +   P
Sbjct: 446 GLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 505

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            +  +   I GLC    +  + V++ +M E GI+ +   +  L     K G
Sbjct: 506 DLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG 556



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 170/379 (44%), Gaps = 10/379 (2%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAVYTF 154
            Y+SMI+   K+ +     D V      + +    +V T+  ++  + +  K+   +  +
Sbjct: 299 TYNSMIDGFGKVGRLD---DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFY 355

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
             M+  G+  N+ +++ L+ A CK   +++A + + D  +   +P+  TY+ L++   K 
Sbjct: 356 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 415

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            NL  A  +  EM+  G   ++VTY  ++D LC A R+ EA  +   MD+    P    Y
Sbjct: 416 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASY 475

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H +     ++ A++   E++  GI  D+ +Y   I   C   K +    V+ +M  
Sbjct: 476 NALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE 535

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
            G+  NS     +++     G   E   +   M +L  E    T+ ++I   C+   + K
Sbjct: 536 CGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSK 595

Query: 393 AFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           A   +  +     + +    F+ +I+GLC    V  +  L E M++KG+ P    +  L 
Sbjct: 596 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 655

Query: 452 KLLIKEGREDVLKFLQEKM 470
               K+G       L++KM
Sbjct: 656 DGNFKQGNVLEALALRDKM 674



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I++  KI      + L N M +     NV T+  ++      ++++EA   F  M
Sbjct: 404 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM 463

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNL 216
              GV  NLA++N L+    K+KN+ +A E+ + +K R I PD   Y   + G      +
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKI 523

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A+ +  EM + G   + + Y  ++D   K+G   E L ++  M       T   + VL
Sbjct: 524 EAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVL 583

Query: 277 VHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           +        +  AVD F  +  + G+ A+ A++ A+I   CK N+ +    + + M  KG
Sbjct: 584 IDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKG 643

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           + P+      +++G   +G   EA  +  +M ++  + D   YT ++       +L+KA
Sbjct: 644 LVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 126/276 (45%), Gaps = 3/276 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTF 154
           ++ +Y+++I    K +      +L+N ++ + +  ++  +   +     ++K+E A    
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 530

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKD 213
           N M++ G+  N   +  L+ A  KS N  +   + D MK+  I  +  T+ +L++G  K+
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKN 590

Query: 214 PNLPRAREIFREMV-DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
             + +A + F  +  D G   +   +  M+D LCK  +V+ A  + + M      P    
Sbjct: 591 KLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTA 650

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           Y+ L+     +  + +A+    +M + G+  D+  Y +L+      N+ +     L++M 
Sbjct: 651 YTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMI 710

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
            +G+ P+   C  +L      G  DEA  +   ++K
Sbjct: 711 GEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMK 746


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 148/293 (50%), Gaps = 2/293 (0%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           +N L+  LC       A  + + M  R  +PD  TY+ILLE   K     +A ++  EM 
Sbjct: 169 YNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMH 228

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D GC PDIVTY ++++ +C+ GRV++A+  +K++ S  C P +  Y++++       R E
Sbjct: 229 DKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWE 288

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           DA     EM   G   +V  +N LI   C+    +    VL+ M   G  PNS + N +L
Sbjct: 289 DAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLL 348

Query: 348 NGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
           +    + +  +A      M+ + C  D  +Y  ++   C+ GE++ A ++   +K K   
Sbjct: 349 HAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCS 408

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P + +++ +I+GL   G   ++  LL++M  KG++P   T+  +   L +E R
Sbjct: 409 PVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDR 461



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 14/303 (4%)

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           VED +E  +N  +               E +  +Y+ +++ L    +++    L+  M  
Sbjct: 252 VEDAMEFLKNLPSYGC------------EPNTVSYNIVLKGLFTAERWEDAEKLMEEMAH 299

Query: 126 KRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           K    NV TF +++    R   VE A+     M +YG T N  ++N LL A CK K + K
Sbjct: 300 KGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHK 359

Query: 185 AQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A E  + M  R   PD  +Y+ LL    ++  +  A E+  ++ D GC+P +++Y  ++D
Sbjct: 360 AMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVID 419

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            L KAG+  EAL ++  M S   +P    YS +      E+RIE+AV TF +++  GI  
Sbjct: 420 GLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRP 479

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
             A+YNA++   CK  +  N   +   M S G  PN  T  I++ GL   G   EA  +F
Sbjct: 480 TAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELF 539

Query: 364 RRM 366
            ++
Sbjct: 540 AQL 542



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 169/385 (43%), Gaps = 38/385 (9%)

Query: 94  EHSVRAYHSMIESL-AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           E     Y+++I  L  + R    +  L +  R   + +V T+ I++    +    ++A+ 
Sbjct: 163 EPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMK 222

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWG 211
             + M   G   ++  +N +L+ +C+   V  A E    +      P++ +Y+I+L+G  
Sbjct: 223 LLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLF 282

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
                  A ++  EM   GC P++VT+ +++  LC+ G V+ A+ +++ M    C P S 
Sbjct: 283 TAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSL 342

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC--------------- 316
            Y+ L+H +  + +I  A++    M   G   D+  YN L+ A C               
Sbjct: 343 SYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQL 402

Query: 317 --------------------KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
                               KA K K    +L +M SKG+ P+  T + I +GL      
Sbjct: 403 KDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRI 462

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           +EA R F ++  +     A  Y  ++   C+  E   A  ++ YM     +P+  T+++L
Sbjct: 463 EEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTIL 522

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGI 440
           + GL  +G+V ++  L   +  +G+
Sbjct: 523 VEGLAYEGLVKEARELFAQLCSRGV 547



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 148/302 (49%), Gaps = 4/302 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           +N +++  C +  +  A+ +   M     PD+ TY+ L+ G         A  +  +M  
Sbjct: 137 YNAMVAGYCGAGQLDAARRLVADMPVE--PDAYTYNTLIRGLCGRGRTSNALAVLEDMFR 194

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            GC PD+VTY I+++  CK     +A+ ++  M    C P    Y+V+++    E R+ED
Sbjct: 195 RGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVED 254

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A++    +   G   +   YN ++     A ++++  +++++M  KG  PN  T N++++
Sbjct: 255 AMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLIS 314

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            L  RG  + A  V  +M +  C  ++ +Y  ++  FC+  ++ KA +  + M  +   P
Sbjct: 315 FLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYP 374

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
            + +++ L+  LC  G V  +  LL  + +KG  P   ++  +   L K G+ ++ L+ L
Sbjct: 375 DIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELL 434

Query: 467 QE 468
            E
Sbjct: 435 DE 436



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD++ Y  MV   C AG++D A  +V  M      P ++ Y+ L+       R  +A+ 
Sbjct: 131 GPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALA 187

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
              +M + G L DV  Y  L+ A CK + +K   ++L +M+ KG AP+  T N++LNG+ 
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G  ++A    + +    CE +  +Y +++K        E A K+ + M  K   P++ 
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVV 307

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457
           TF++LI+ LC +G+V  +  +LE M + G  P+  ++  L     K+
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQ 354



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 16/231 (6%)

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIY----SVLVHTYGVENRIEDAVDTFLEMEKN 299
           VL + G +D+AL +V S+      P S       + L+       R  DA      +  +
Sbjct: 76  VLVRRGELDDALRLVDSLAGL--NPPSPAAVGPCAALIKKLCASGRTADARRV---LAAS 130

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   DV +YNA++  +C A +     R++ DM    V P++ T N ++ GL GRG T  A
Sbjct: 131 G--PDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNA 185

Query: 360 YRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418
             V   M +  C  D  TYT++++  C+    ++A K+   M  K   P + T++V++NG
Sbjct: 186 LAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245

Query: 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFG-KLRKLLIKEGREDVLKFLQE 468
           +C +G V D+   L+++   G  P+  ++   L+ L   E  ED  K ++E
Sbjct: 246 ICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEE 296


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 194/411 (47%), Gaps = 22/411 (5%)

Query: 63  PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122
           P+++  VL   RN   +A  FF+WAE+Q  ++ S  +Y  +++ LA+             
Sbjct: 47  PKLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILAR----------NGL 96

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           MR+        +C+ M K   V K+E  V       +  +       + LL    K   +
Sbjct: 97  MRS-------AYCV-MEKVVSV-KMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLL 147

Query: 183 RKAQEIFDCMKDR-FIPDSKTYSILLEGW-GKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
            K   +F  M  +  +PD K  + +L     +D N+  ARE++  MV+ G  P +VTY  
Sbjct: 148 EKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNT 207

Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
           M+D  CK G V EAL ++  M +  C P    Y+VLV+       +E A +   +M + G
Sbjct: 208 MLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLG 267

Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
           +   V  Y+ LI  +C+  + +   R+ ++M S+G  P   T N I+ GL   G   +A 
Sbjct: 268 LEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDAR 327

Query: 361 RVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
           ++   M+ K    D  +Y  +I  + + G + +AF ++  ++ +   PS+ T++ LI+GL
Sbjct: 328 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGL 387

Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           C  G +  +  L ++MI+ G  P   TF    +   K G   + K L ++M
Sbjct: 388 CRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEM 438



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 21/352 (5%)

Query: 43  LSSPKVVLDTALDQSGIRVSPEIVE--DVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRA 99
           +S  + +LD  ++++   + P++V    ++  +   G +   F  +AE + ++   SV  
Sbjct: 323 VSDARKLLDVMVNKN---LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVT 379

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRML-------NVETFCIIMRKYARVQKVEEAVY 152
           Y+++I+ L +      + DL  AMR K  +       +V TF   +R + ++  +  A  
Sbjct: 380 YNTLIDGLCR------LGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKE 433

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWG 211
            F+ M   G+  +  A+   +    K  +  KA  + + M  R F PD  TY++ ++G  
Sbjct: 434 LFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLH 493

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K  NL  A E+ ++M+  G  PD VTY  ++     AG + +A  +   M S    P+  
Sbjct: 494 KLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVV 553

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+VL+H+Y V  R++ A+  F EM + G+  +V  YNALI   CK  K    Y    +M
Sbjct: 554 TYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEM 613

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIK 382
            +KG++PN  T  I++N     G   EA R+++ M+ +  + D+ T+  ++K
Sbjct: 614 QAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLK 665



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 182/375 (48%), Gaps = 3/375 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
           +V  Y++++  L K  +      L++ M  K ++ ++ ++  ++  Y R+  + EA   F
Sbjct: 306 TVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLF 365

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKD 213
             ++   +  ++  +N L+  LC+  ++  A  + D M K    PD  T++  + G+ K 
Sbjct: 366 AELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKM 425

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            NLP A+E+F EM++ G  PD   Y   +    K G   +A G+ + M +    P    Y
Sbjct: 426 GNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITY 485

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +V +        +++A +   +M  NG++ D   Y ++I A   A   +    +  +M S
Sbjct: 486 NVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLS 545

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG+ P+  T  ++++    RG    A   F  M  K    +  TY  +I   C+  ++++
Sbjct: 546 KGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQ 605

Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
           A+  +  M+ K   P+ +T+++LIN  C+ G   ++  L +DM+++ I+P   T   L K
Sbjct: 606 AYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLK 665

Query: 453 LLIKEGREDVLKFLQ 467
            L K+ +  V++ L+
Sbjct: 666 HLNKDYKLHVVRHLE 680



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 143/319 (44%), Gaps = 2/319 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF- 189
           V T+  ++  + +   V+EA+     MQ  G + N   +N L++ L  S  + +A+E+  
Sbjct: 202 VVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQ 261

Query: 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
           D ++        TY  L+ G+ +   +  A  +  EM+  G  P +VTY  ++  LCK G
Sbjct: 262 DMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWG 321

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           RV +A  ++  M +    P    Y+ L++ Y     I +A   F E+    +   V  YN
Sbjct: 322 RVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYN 381

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-K 368
            LI   C+        R+  +M   G  P+  T    + G    G    A  +F  M+ +
Sbjct: 382 TLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNR 441

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             + D   Y   I    + G+  KAF + + M  + F P + T++V I+GL   G + ++
Sbjct: 442 GLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEA 501

Query: 429 CVLLEDMIEKGIRPSGETF 447
             L++ M+  G+ P   T+
Sbjct: 502 SELVKKMLYNGLVPDHVTY 520


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 4/356 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYT- 153
           SV +Y ++I S  +  QY++  +L+  M+ +++  ++ T+  ++   AR     E + + 
Sbjct: 176 SVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSL 235

Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGK 212
           F  M+  G+  ++  +N LL+A        +A+ +F  M +   +PD  TY  L+E +GK
Sbjct: 236 FAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGK 295

Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
              L +  E+ +EM  +G  PDI +Y ++++     G +  A+G+ + M    C P +  
Sbjct: 296 LNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVT 355

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS+L++ YG   R +D  + FLEM+ +    DV  YN LI  F +   FK V  +  DM 
Sbjct: 356 YSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMV 415

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELE 391
            + V PN  T   ++      G  ++A ++   M  K        YT +I+ + Q    E
Sbjct: 416 EENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYE 475

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           +A  ++  M      P++ T++ LIN     G+  +S  ++  M E G+    ++F
Sbjct: 476 EALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSF 531



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 169/359 (47%), Gaps = 3/359 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           +  Y +++E+  K+ + + + +L+  M +   L ++ ++ +++  YA    +  A+  F 
Sbjct: 283 ITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFR 342

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDP 214
            MQ+     N   ++ LL+           +E+F  MK     PD  TY++L+E +G+  
Sbjct: 343 QMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGG 402

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
                  +F +MV+    P++ TY  ++    K G  ++A  I+  MD     P++  Y+
Sbjct: 403 YFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYT 462

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++  YG     E+A+  F  M + G    V  YN+LI  F +   +K    ++  M   
Sbjct: 463 GVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGES 522

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKA 393
           GVA +  + N ++ G    G+ +EA + +  + K   + D  T+  ++ ++C  G ++++
Sbjct: 523 GVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDES 582

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
            + ++ ++    +PS+  + ++I          D+  +L++M+   +    +  GK+ K
Sbjct: 583 EEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMK 641



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 149/308 (48%), Gaps = 8/308 (2%)

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV-DTGC 231
           LS+L    ++ +  EIF   K++   +   ++++ + + +  +  R+  +F+ M     C
Sbjct: 84  LSSLPPRGSIARCLEIF---KNKLSLND--FALVFKEFAQRGDWQRSLRLFKYMQRQIWC 138

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            P+   Y I++ +L + G ++++  I + M +     + F Y+ L+++YG   + E +++
Sbjct: 139 KPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLE 198

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKAN-KFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
               M+K  +   +  YN +I +  +    ++ +  +  +M  +G+ P+  T N +LN  
Sbjct: 199 LLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNAC 258

Query: 351 IGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             RG  DEA  VFR M +     D  TY  +++ F +  +LEK  ++ K M+    +P +
Sbjct: 259 ANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDI 318

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            +++VL+     KG +  +  +   M E    P+  T+  L  L    GR D ++ L  +
Sbjct: 319 SSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLE 378

Query: 470 MNLLVKEP 477
           M +   EP
Sbjct: 379 MKVSNTEP 386



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 116/254 (45%), Gaps = 19/254 (7%)

Query: 96  SVRAYHSMIESLAKIRQYQ---IMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
           S +AY  +IE+  +   Y+   +M++ +N M +K    VET+  ++  +AR    +E+  
Sbjct: 457 STKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKP--TVETYNSLINMFARGGLYKESEA 514

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWG 211
               M + GV ++  +FNG++    +     +A + + +  K RF PD +T+  +L  + 
Sbjct: 515 IMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYC 574

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
               +  + E FRE+  +G  P ++ Y +M+ V  ++ R D+A  +   +D  V    S 
Sbjct: 575 TAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEV---LDEMVTNKVSN 631

Query: 272 IYSVL-------VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324
           I+ V+          Y     +E   D   ++   G    +  YN L+ A     + +  
Sbjct: 632 IHQVVGKMMKGDYDDYSNWQMVEYVFD---KLNSEGCGLGMRFYNTLLEALWWLGQKERA 688

Query: 325 YRVLKDMNSKGVAP 338
            RVL +   +G+ P
Sbjct: 689 ARVLSEAIKRGLFP 702


>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
 gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 170/368 (46%), Gaps = 5/368 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWA-EKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           ++ E+V  VL    N+GT +F FF WA     +Y+ +   +  ++++LA+ R+Y  MW +
Sbjct: 70  LNSELVFRVLRACSNSGTESFRFFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKV 129

Query: 120 VNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAFNGLLSALC 177
           +  M+T+ + ++ ET   I+++Y +   V+ AV  FN   K     Q +  +N LL ALC
Sbjct: 130 LLQMKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALC 189

Query: 178 KSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
           + K    A  +   M +    PD KTY  L+ GW     +  A+E   EM   G NP + 
Sbjct: 190 EVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLR 249

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
              ++V+ L  AG ++ A  +V+ M      P    ++ L+        ++  ++ F E+
Sbjct: 250 GRDLLVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEV 309

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
            K G+  D+  Y  LI A  K  +    +R+L      G  P       IL G+  RG+ 
Sbjct: 310 CKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQF 369

Query: 357 DEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           D+A+  F  M  K    +   YTM+I M  +GG    A      M      P    F ++
Sbjct: 370 DDAFCFFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMV 429

Query: 416 INGLCDKG 423
            +GL + G
Sbjct: 430 TDGLKNCG 437



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 4/232 (1%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSFIYSVLVHTYGVENRIEDAV 290
           +P+ +++  ++    K G VD A+ I      ++ C  T  +Y+ L+           A 
Sbjct: 141 SPETISF--IIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAY 198

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
                M + G+  D   Y  L+  +C A K K     L++M+ KG  P  R  ++++ GL
Sbjct: 199 ALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGL 258

Query: 351 IGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
           +  G  + A  + R+M K     D  T+  +I + C  GE++    ++  +      P +
Sbjct: 259 LNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDI 318

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
           +T+ +LI      G + ++  LL   IE G  P    +G + K + K G+ D
Sbjct: 319 NTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFD 370



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 132/309 (42%), Gaps = 6/309 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMV 227
           F  L+  L +++      ++   MK + +  S +T S +++ +GK   +  A  IF +  
Sbjct: 110 FEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCS 169

Query: 228 DT-GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            +  C   +  Y  ++  LC+      A  +++ M      P    Y  LV  +    ++
Sbjct: 170 KSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKM 229

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           ++A +   EM + G    +   + L+     A   ++   +++ M  +G  P+  T N +
Sbjct: 230 KEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSL 289

Query: 347 LNGLIGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
           ++ +   GE D    +F  + KL  C  D +TY ++I    + G +++AF++        
Sbjct: 290 IDVICNSGEVDFCINIFHEVCKLGLC-PDINTYKILIPATSKVGRIDEAFRLLHCCIEDG 348

Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVL 463
            +P    +  ++ G+C +G   D+     DM  KG  P+   +  L  +  + GR  D  
Sbjct: 349 HVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAA 408

Query: 464 KFLQEKMNL 472
            +L E   L
Sbjct: 409 NYLMEMAEL 417


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 184/416 (44%), Gaps = 38/416 (9%)

Query: 51  DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
           + AL+   +RV   +V +V+ K      +   FF+WA K++NY+H    Y ++I  L  +
Sbjct: 78  ERALEVLMLRVDHWLVREVM-KTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELV 136

Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
            QY  MW ++  M                       V   +     M+           +
Sbjct: 137 EQYGEMWKMIQEM-----------------------VRSPICVVTPME----------LS 163

Query: 171 GLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            ++  L  +K + KA  IF  +K R   P ++ Y+ ++     +    +  E++ EM + 
Sbjct: 164 QVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNE 223

Query: 230 G-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
           G C+PD VTY  ++   CK GR D A+ ++  M     +PT+ IY++++  +   + +  
Sbjct: 224 GHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHG 283

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A+  F EM       DV  Y  LI    KA +    Y    +M  +   P++   N ++N
Sbjct: 284 ALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMIN 343

Query: 349 GLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIK-MFCQGGELEKAFKVWKYMKLKRFI 406
            L   G  D+  ++F  M +  C  +  TY  +IK +F     + + F  ++ MK     
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGIS 403

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV 462
           PS  T+S+LI+G C    +  + +LLE+M EKG  P    +  L   L K  R D+
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 191/405 (47%), Gaps = 8/405 (1%)

Query: 61  VSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWD 118
           V+P  +  V+    NA  +  A   F +  K +  + + +AY+SMI  L    QY+ + +
Sbjct: 157 VTPMELSQVIRMLGNAKMIGKAITIF-YQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHE 215

Query: 119 LVNAMRTKRMLNVET--FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           L N M  +   + +T  +  ++  + ++ + + A+   N M++ G+      +  ++S  
Sbjct: 216 LYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLF 275

Query: 177 CKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI 235
            K  NV  A  +F+ M+  +  PD  TY+ L+ G GK   +  A   + EM    C PD 
Sbjct: 276 FKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDT 335

Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT-YGVENRIEDAVDTFL 294
           V    M++ L KAGR+D+ L + + M  + C P    Y+ ++   +  ++R+ +    F 
Sbjct: 336 VVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFE 395

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
            M+ +GI      Y+ LI  FCK N+ +    +L++M+ KG  P       +++ L    
Sbjct: 396 RMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 455

Query: 355 ETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             D A  +F+ + + C  + A  Y +MIK   + G L+ A  ++  M      P+++ ++
Sbjct: 456 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYN 515

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            L++GL    ++ ++   +  M E G  P   ++  +   L K G
Sbjct: 516 ALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTG 560



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 131/281 (46%), Gaps = 3/281 (1%)

Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFI-PD 199
            +  ++++ +  F  M       N+  +N ++ AL +SK+ V +    F+ MK   I P 
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPS 405

Query: 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259
             TYSIL++G+ K   + +A  +  EM + G  P    Y  ++D L KA R D A  + +
Sbjct: 406 PFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 465

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
            +       ++ +Y+V++   G   R++DA++ F EM K G   +V  YNAL+    +A 
Sbjct: 466 ELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARAC 525

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYT 378
                   ++ M   G  P+  + NIILNGL   G    A  +   M     + DA +Y 
Sbjct: 526 MLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYN 585

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
            ++      G  E+A ++ K M    F   + T+S ++  +
Sbjct: 586 TVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 116/266 (43%), Gaps = 36/266 (13%)

Query: 57  SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQI 115
           SGI  SP     +++ F     +        E  ++ +     AY S+I++L K ++Y +
Sbjct: 400 SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 116 MWDLVNAMRTK-RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
             +L   ++      +   + ++++   +  ++++A+  F+ M K G T N+ A+N L+S
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519

Query: 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            L ++           CM D                        A    R+M + GC PD
Sbjct: 520 GLARA-----------CMLDE-----------------------ALTTMRKMQEHGCLPD 545

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           I +Y I+++ L K G    A+ ++ +M ++  +P +  Y+ ++         E+A +   
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMK 605

Query: 295 EMEKNGILADVAMYNALIGAFCKANK 320
           EM   G   D+  Y++++ A  K ++
Sbjct: 606 EMNALGFEYDLITYSSILEAIGKVDQ 631


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 163/331 (49%), Gaps = 2/331 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV  F I+M  + ++  V  A   F+ + + G+  ++ +FN L+S  C+SKNV +   + 
Sbjct: 225 NVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLK 284

Query: 190 DCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M+ +R  PD  TYS L+ G  K+  +  A  +F EM + G  P+ VT+  ++D  CK 
Sbjct: 285 SVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKH 344

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++D AL   + M     RP    Y+ L++    +  +++A     EM  NG   D   +
Sbjct: 345 GKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITF 404

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
             L+   CK     +   +   M  +G+  +      +++GL   G   +A R+ + M+ 
Sbjct: 405 TTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLS 464

Query: 369 LCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D  TYTM+I  FC+ G+++   K+ K M+    +P + T++ L+NG C +G + +
Sbjct: 465 AGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKN 524

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           + +LL  M+   + P+  TF  L     K G
Sbjct: 525 AKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 212/470 (45%), Gaps = 37/470 (7%)

Query: 24  SSEPSTEALDA----AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL 79
           SS+P  +  D     ++SI+ I  ++P    D +L+ +  R+ P +    +    N   L
Sbjct: 18  SSKPHYKNHDILYTISESINTIHNNNPNP--DYSLNPTLKRILPSLTSHHITNLINLNPL 75

Query: 80  A------FCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAM------ 123
           +      F FF +   +  + H++  Y +M   L+      + + +   +++ M      
Sbjct: 76  SLPPLSLFSFFNYLASRPPFRHTLHNYSTMAHFLSSHNLLSQTHSLFLFIISKMGHHSST 135

Query: 124 ------------RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                         +   +V  F  ++  Y   + +E+A+    +++K   +  +   + 
Sbjct: 136 SLISSLIQTVPTHHRHNHSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDY 195

Query: 172 LLSALCK-SKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           LL  + K ++      E + + +   + P+   ++IL+ G+ K  ++  AR +F E+   
Sbjct: 196 LLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRR 255

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G  P +V++  ++   C++  V+E   +   M+S    P  F YS L++    E+R+E+A
Sbjct: 256 GLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEA 315

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              F EM + G++ +   +  LI   CK  K     R  + M  +G+ P+  T N ++NG
Sbjct: 316 NGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALING 375

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
           L   G+  EA ++   MI    + D  T+T ++   C+ G+++ A ++   M  +     
Sbjct: 376 LCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELD 435

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
              F+ LI+GLC  G V D+  +L+DM+  G +P   T+  +     K+G
Sbjct: 436 DVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKG 485



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 150/287 (52%), Gaps = 4/287 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I  L K  + +    L + M    ++ N  TF  ++    +  K++ A+  F 
Sbjct: 296 VFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFE 355

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
           +M+  G+  +L  +N L++ LC+  ++++A+++ + M  + F PD  T++ L++G  KD 
Sbjct: 356 IMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDG 415

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A EI   MV+ G   D V +  ++  LC+ GRV +A  ++K M S   +P    Y+
Sbjct: 416 DMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYT 475

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++  +  +  ++       EM+++G +  V  YNAL+  FCK  + KN   +L  M + 
Sbjct: 476 MVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNM 535

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381
            V PN  T NI+L+G    G + + +++F     L  +D  +YT ++
Sbjct: 536 EVVPNDITFNILLDGHCKHGSSVD-FKIFNGEKGLV-SDYASYTALV 580



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 107/204 (52%), Gaps = 1/204 (0%)

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
           P  +++++L+H +     + +A   F E+ + G+   V  +N LI  +C++   +  + +
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
              M S+ ++P+  T + ++NGL      +EA  +F  M ++    +  T+T +I   C+
Sbjct: 284 KSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCK 343

Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446
            G+++ A + ++ MK +   P + T++ LINGLC  G + ++  LL +MI  G +P   T
Sbjct: 344 HGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKIT 403

Query: 447 FGKLRKLLIKEGREDVLKFLQEKM 470
           F  L     K+G  D    ++++M
Sbjct: 404 FTTLMDGCCKDGDMDSALEIKDRM 427



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 8/197 (4%)

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK-NVYRVLK 329
            ++  L+  Y     IEDA+     ++KN     V   + L+    K N+   + +    
Sbjct: 156 LVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWEFYL 215

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF----RRMIKLCEADADTYTMMIKMFC 385
           ++   G  PN    NI+++G    G+   A  VF    RR ++       ++  +I  +C
Sbjct: 216 EVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLR---PSVVSFNTLISGYC 272

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +   +E+ F +   M+ +R  P + T+S LINGLC +  V ++  L ++M E G+ P+G 
Sbjct: 273 RSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGV 332

Query: 446 TFGKLRKLLIKEGREDV 462
           TF  L     K G+ D+
Sbjct: 333 TFTTLIDGQCKHGKIDL 349



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 4/189 (2%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DC 191
           TF  +M    +   ++ A+   + M + G+  +  AF  L+S LC+   VR A+ +  D 
Sbjct: 403 TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDM 462

Query: 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           +     PD  TY+++++ + K  ++    ++ +EM   G  P +VTY  +++  CK G++
Sbjct: 463 LSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQM 522

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             A  ++ +M +    P    +++L+  +        +VD  +   + G+++D A Y AL
Sbjct: 523 KNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG---SSVDFKIFNGEKGLVSDYASYTAL 579

Query: 312 IGAFCKANK 320
           +    K +K
Sbjct: 580 VNESIKISK 588


>gi|115469690|ref|NP_001058444.1| Os06g0694600 [Oryza sativa Japonica Group]
 gi|53791827|dbj|BAD53893.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|53792848|dbj|BAD53881.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|113596484|dbj|BAF20358.1| Os06g0694600 [Oryza sativa Japonica Group]
          Length = 484

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 159/318 (50%), Gaps = 2/318 (0%)

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215
           V  + G    +A  N LL A C    V +A+ +F    D + PD++T++ LL G+ +  N
Sbjct: 153 VWARAGREFGVAELNALLRAFCARGRVAEARALFHRYCDAYPPDARTFNTLLLGFKEAGN 212

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM-DSTVCRPTSFIYS 274
                  + + V  G  PD V+Y + +D  CK GR  +AL ++  M     CRPT  +++
Sbjct: 213 AQALDLFYHDAVLRGFVPDAVSYCVRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFT 272

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L++  G+      A   F EM + G+  D   +NAL+GA+ +A   ++   V+ +M  K
Sbjct: 273 TLIYGAGIVRNAIRARQLFDEMGQWGVTPDRGAHNALMGAYVRARDLQSGMTVMSEMERK 332

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI-KMFCQGGELEKA 393
           G+  +  + N +L G    G+ +  ++V+ +M+          TM++ K+FC+    +  
Sbjct: 333 GIGLDDVSYNTMLCGFQRIGDLEGIWKVYSKMVGSGFMPRTRTTMLLMKVFCENARPDLG 392

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
            ++W Y+  K  +P  H   VL+ GLC +G+V ++     +MIE G+ P+   F  L   
Sbjct: 393 LELWDYLLGKGCVPHRHALDVLVTGLCCRGVVLEAYRCFREMIEMGMTPTERAFRVLEGF 452

Query: 454 LIKEGREDVLKFLQEKMN 471
           L ++   + L+ +++ M 
Sbjct: 453 LKRKREFEKLEEIRQMMK 470


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 165/338 (48%), Gaps = 3/338 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCM 192
           F  I+    +V++    +     M  +G+  N+   N L+++ C    V  A  +    +
Sbjct: 77  FAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKIL 136

Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           K    PD+ +++ L++G   +  +  A  +F +M+  G  PD+V Y  +++ LCK G   
Sbjct: 137 KLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTS 196

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
            A+ +++SM+   C+P   +Y  L+H+   + +   A + F EM   GI  ++   N+L+
Sbjct: 197 AAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLV 256

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CE 371
            A C   ++K+V  +L +M    + PN+ +   +++ L   G   +A+ V   M +   E
Sbjct: 257 YALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVE 316

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TYT +I   C   E+++A KV+  M  K   P++ +++ LING C    +  +  L
Sbjct: 317 PDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYL 376

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            E+M  + + P+  T+  L   L   GR +D +   +E
Sbjct: 377 FEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFRE 414



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 38/385 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           ++ N +  V  Y ++I SL K RQ    ++L + M TK +  N+ T   ++     + + 
Sbjct: 206 EKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEW 265

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSIL 206
           +      N M    +  N  +   ++ ALCK   V +A ++ D M    + PD  TY+ L
Sbjct: 266 KHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTAL 325

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G      +  A ++F  MV  GC P++ +Y  +++  CK  R+D+A+ + + M     
Sbjct: 326 IDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKL 385

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEM------------------------------ 296
            P +  Y+ L+H      R++DA+  F EM                              
Sbjct: 386 IPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMA 445

Query: 297 -----EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
                E + +  D+ +Y  +I   C+A + ++   +  +++SKG+ PN  T NI+ +GL 
Sbjct: 446 LLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLC 505

Query: 352 GRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
            RG  DEA ++F  M +  C AD  TY  + + F +  E  +A ++ + M  + F   + 
Sbjct: 506 KRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVS 565

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDM 435
           T ++L+  L D G+       LEDM
Sbjct: 566 TTTLLVGMLSDDGLDQSEAHKLEDM 590



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 182/384 (47%), Gaps = 4/384 (1%)

Query: 91  QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKVEE 149
           + ++  V  Y ++I  L K         L+ +M       +V  +  ++    + ++  +
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLE 208
           A   F+ M   G++ N+   N L+ ALC     +    + + M D + +P++ + + +++
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268
              K+  + +A ++   M  +G  PD+VTY  ++D  C    +DEA+ +   M    C P
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAP 352

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328
             F Y+ L++ Y    R++ A+  F EM +  ++ +   YN LI   C   + ++   + 
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412

Query: 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQG 387
           ++M + G  P+  T  I+L+ L      D+A  + + +     + D   YT++I   C+ 
Sbjct: 413 REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRA 472

Query: 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           GELE A  ++  +  K   P++ T++++ +GLC +G++ ++  L  +M E      G T+
Sbjct: 473 GELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 532

Query: 448 GKLRKLLIKEGRED-VLKFLQEKM 470
             + +  ++       ++ L+E +
Sbjct: 533 NTITQGFLRNNETSRAIQLLEEML 556



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 1/244 (0%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   F  M+     P IV +  ++  + K  R    L + + MDS       +  +V
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L++++   NR+  A     ++ K G   D A +  LI   C   +      +   M  +G
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
             P+      ++NGL   G T  A R+ R M K  C+ D   Y  +I   C+  +  +AF
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
            ++  M  K   P++ T + L+  LC+ G       LL +M++  I P+  +   +   L
Sbjct: 235 NLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDAL 294

Query: 455 IKEG 458
            KEG
Sbjct: 295 CKEG 298



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 1/178 (0%)

Query: 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343
           N ++DA+ +F  M        +  +  ++ +  K  ++  V  + + M+S G+  N  T 
Sbjct: 53  NTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
           N+++N        + A+ V  +++KL C+ D  ++T +IK  C  G++ +A  ++  M  
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE 460
           + F P +  ++ LINGLC  G  S +  LL  M +   +P    +G L   L K+ ++
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQ 230


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/512 (23%), Positives = 206/512 (40%), Gaps = 86/512 (16%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVS-PEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           + A  + K++ S P+       D        P    ++L++  N   L+  FF W   Q 
Sbjct: 95  EIAAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNV-FLSLRFFLWLSSQP 153

Query: 92  NY-EHSV---RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
            +  H V   + + +++E+ A +     ++    +     + N       +R       V
Sbjct: 154 EFLPHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENY------IRCVCEGGLV 207

Query: 148 EEAVYTFNVMQKYGVTQNLAAFN------------------------------------- 170
           EEAVYTF+++++ G    +  +N                                     
Sbjct: 208 EEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVG 267

Query: 171 GLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+ A C    V +A EI    ++D   P +  ++ L+ G+ K+ N  R  E+   M+  
Sbjct: 268 YLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVK 327

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
             NPDI TY  +++  CK     +A  +  ++      P   +Y+ L+H +    ++EDA
Sbjct: 328 NRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDA 387

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              + EM   G L +   YN LI  FCK        ++ K M   G    + +CN ++ G
Sbjct: 388 SKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILG 447

Query: 350 LIGRGETDEAYRVFRRM------------------------------------IKLCEAD 373
           L   G TDEAY  FR M                                     K  +  
Sbjct: 448 LCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPS 507

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             +Y  +I+  CQ G +++A ++W  M  +   P + T   +I+GLC++G V +    L 
Sbjct: 508 TSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLI 567

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            M++  ++P  ETF KL + LI+ G+E +L+ 
Sbjct: 568 TMLKSNLKPQKETFYKLIQSLIQIGKELLLEL 599



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 3/242 (1%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P+  +    +  +C+ G V+EA+     +     RP    ++    +     R +    
Sbjct: 188 SPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWK 247

Query: 292 TFLEMEKNGILADVAMYNA--LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +  M + G+  DV +     LI AFC  NK    Y +L+     G+ P +   N +++G
Sbjct: 248 LYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISG 307

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                       +   MI K    D  TY  +I  FC+     +AF+V+  +K + + P 
Sbjct: 308 FCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPD 367

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           M  ++ LI+G C  G + D+  L  +MI+KG  P+  ++  L     K G  D    L +
Sbjct: 368 MVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYK 427

Query: 469 KM 470
           KM
Sbjct: 428 KM 429


>gi|242046988|ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
 gi|241924617|gb|EER97761.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
          Length = 551

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 206/453 (45%), Gaps = 29/453 (6%)

Query: 44  SSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSM 103
           SS  V L+  L++  + + P +V  VL    ++ T A  F+ WAE +  ++H+  A   +
Sbjct: 78  SSDSVELE--LERLHVDLDPFVVNRVLRSVSDSET-AVQFYWWAESRPGFDHTQFAIAYI 134

Query: 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
           +  L     + ++ + +  +R++ + L+   + I++  Y R  K +  + TF+ M   G 
Sbjct: 135 VSLLFIDSNFFLLSEFLERVRSQGVTLHRSLYRILLSGYVRAGKFDSVIQTFDEMVTSGC 194

Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRARE 221
            +    +N  +  L K+      ++ +    D+ F   S TYS  +    +   +     
Sbjct: 195 REFGVDYNRFIGVLVKNCCFDLVEKYYGVALDKGFCLTSFTYSRWISALCQSDRIELVER 254

Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
           +  +M   GC PDI    I VD LCK  R+ +AL ++++M+     P    Y+ +V    
Sbjct: 255 LLADMDKFGCFPDIWACNIYVDYLCKQNRLHDALMMLENMEMRGTGPDVVTYTTIVGCLC 314

Query: 282 VENRIEDAVDTFLEMEKNGI-----------------------LADVAMYNALIGAFCKA 318
              +  +AV+ + EM + G+                         D+   N LI AFCKA
Sbjct: 315 DNKQFAEAVELWEEMMRRGVKPDIISCGVLIFGLCKNHMEVGGFCDIVSCNILIDAFCKA 374

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTY 377
            K  +  ++ K+M  KG+  ++ T   ++NGL G G  + A  +F +M+K     + + Y
Sbjct: 375 KKVTSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYCNLAEEIFEQMLKAQVVPNVNLY 434

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
            +M+   C+ G+ E+A K++  M  K   P + TF+ LI  L       ++  L  DM  
Sbjct: 435 NIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDVITFNTLIYWLGKSSRAIEAVDLFRDMRA 494

Query: 438 KGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +G+ P   TF  L   L++EG+  +   + E M
Sbjct: 495 RGVEPDSLTFRYLISGLLEEGKATLAYEVWEYM 527



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEI 188
           +V T+  I+      ++  EAV  +  M + GV  ++ +   L+  LCK+   V    +I
Sbjct: 302 DVVTYTTIVGCLCDNKQFAEAVELWEEMMRRGVKPDIISCGVLIFGLCKNHMEVGGFCDI 361

Query: 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             C            +IL++ + K   +  A ++F+EM   G   D VTYG +++ L   
Sbjct: 362 VSC------------NILIDAFCKAKKVTSALKLFKEMGYKGIQADAVTYGTLINGLYGV 409

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G  + A  I + M      P   +Y++++H      + E A   FL+M +  +  DV  +
Sbjct: 410 GYCNLAEEIFEQMLKAQVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDVITF 469

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N LI    K+++      + +DM ++GV P+S T   +++GL+  G+   AY V+  M++
Sbjct: 470 NTLIYWLGKSSRAIEAVDLFRDMRARGVEPDSLTFRYLISGLLEEGKATLAYEVWEYMME 529



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 4/210 (1%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNLAAFNGLLSALCKSKNVRKAQE 187
           VE +  +MR+  +   +   V  F + + +   G   ++ + N L+ A CK+K V  A +
Sbjct: 323 VELWEEMMRRGVKPDIISCGVLIFGLCKNHMEVGGFCDIVSCNILIDAFCKAKKVTSALK 382

Query: 188 IFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           +F  M  + I  D+ TY  L+ G         A EIF +M+     P++  Y IM+  LC
Sbjct: 383 LFKEMGYKGIQADAVTYGTLINGLYGVGYCNLAEEIFEQMLKAQVVPNVNLYNIMLHNLC 442

Query: 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
           KAG+ ++A  I   M      P    ++ L++  G  +R  +AVD F +M   G+  D  
Sbjct: 443 KAGQFEQAQKIFLQMIQKEVSPDVITFNTLIYWLGKSSRAIEAVDLFRDMRARGVEPDSL 502

Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
            +  LI    +  K    Y V + M   G+
Sbjct: 503 TFRYLISGLLEEGKATLAYEVWEYMMENGI 532



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 126 KRMLNVETFC------IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           K  + V  FC      I++  + + +KV  A+  F  M   G+  +   +  L++ L   
Sbjct: 350 KNHMEVGGFCDIVSCNILIDAFCKAKKVTSALKLFKEMGYKGIQADAVTYGTLINGLYGV 409

Query: 180 KNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
                A+EIF+ M K + +P+   Y+I+L    K     +A++IF +M+    +PD++T+
Sbjct: 410 GYCNLAEEIFEQMLKAQVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDVITF 469

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             ++  L K+ R  EA+ + + M +    P S  +  L+     E +   A + +  M +
Sbjct: 470 NTLIYWLGKSSRAIEAVDLFRDMRARGVEPDSLTFRYLISGLLEEGKATLAYEVWEYMME 529

Query: 299 NGILADVAMYNALIGAFCKANK 320
           NGI+ D  + + LI      NK
Sbjct: 530 NGIILDRDVSDRLISMLKSKNK 551


>gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g07740, mitochondrial; Flags: Precursor
 gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana]
 gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana]
 gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana]
 gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 180/374 (48%), Gaps = 4/374 (1%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET-FCIIMRKYARVQKV 147
           ++  + H   +Y S+I  LAK R +  +  ++  +R + +   E+ F  +++ Y +   V
Sbjct: 73  QEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSV 132

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206
           ++A+  F+ +  +   + + + N L++ L  +  + KA+  FD  KD R  P+S +++IL
Sbjct: 133 DKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNIL 192

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+    +   A ++F EM++    P +VTY  ++  LC+   + +A  +++ M     
Sbjct: 193 IKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRI 252

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           RP +  + +L+     +    +A     +ME  G    +  Y  L+    K  +      
Sbjct: 253 RPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKL 312

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFC 385
           +L +M  + + P+    NI++N L       EAYRV   M +K C+ +A TY MMI  FC
Sbjct: 313 LLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFC 372

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR-PSG 444
           +  + +    V   M   R  P+  TF  ++ GL   G +  +C +LE M +K +   SG
Sbjct: 373 RIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSG 432

Query: 445 ETFGKLRKLLIKEG 458
                L  L IK+G
Sbjct: 433 AWQNLLSDLCIKDG 446



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 154/306 (50%), Gaps = 2/306 (0%)

Query: 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT- 202
           ++  EEA+  F+  Q+ G   +  +++ L+  L KS+N     +I   ++ R +   ++ 
Sbjct: 59  IEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESL 118

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +  L++ +GK  ++ +A ++F ++    C   I +   +++VL   G +++A        
Sbjct: 119 FMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAK 178

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               RP S  +++L+  +  +   E A   F EM +  +   V  YN+LIG  C+ +   
Sbjct: 179 DMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMG 238

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV-FRRMIKLCEADADTYTMMI 381
               +L+DM  K + PN+ T  +++ GL  +GE +EA ++ F    + C+     Y +++
Sbjct: 239 KAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILM 298

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
               + G +++A  +   MK +R  P +  +++L+N LC +  V ++  +L +M  KG +
Sbjct: 299 SDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCK 358

Query: 442 PSGETF 447
           P+  T+
Sbjct: 359 PNAATY 364



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 128/282 (45%), Gaps = 16/282 (5%)

Query: 202 TYSILLEGWGKDPNLPRAREI---------FREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           T+    + W + P L   +EI         F +  + G   D  +Y  ++  L K+   D
Sbjct: 39  THKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFD 98

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
               I++ +     R    ++  L+  YG    ++ A+D F ++     +  +   N LI
Sbjct: 99  AVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLI 158

Query: 313 GAFC---KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
                  +  K K+ +   KDM    + PNS + NI++ G + + + + A +VF  M+++
Sbjct: 159 NVLVDNGELEKAKSFFDGAKDMR---LRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 215

Query: 370 -CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             +    TY  +I   C+  ++ KA  + + M  KR  P+  TF +L+ GLC KG  +++
Sbjct: 216 EVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEA 275

Query: 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             L+ DM  +G +P    +G L   L K GR D  K L  +M
Sbjct: 276 KKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEM 317


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 179/366 (48%), Gaps = 24/366 (6%)

Query: 79  LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY-QIMWDLVNAMRTKRMLNV------ 131
           L   +F W++K+    HS+     M+ SLA  ++Y +I   L N ++  +   V      
Sbjct: 77  LTLRYFTWSQKELKLSHSLELTFRMLHSLAYAKKYSKIRSFLDNCVQNDKNYPVSFIFHA 136

Query: 132 -----ETFC-------IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
                ++FC       I++   A+  K       F     YG+  ++ + N L+S L K 
Sbjct: 137 ISVSGDSFCANSIIVDILVWADAKNLKTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVK- 195

Query: 180 KNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
             + KA  I   MK D   P+  T++IL++G+  D N+  A ++F EM   G  P++VTY
Sbjct: 196 --MYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTY 253

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
             +++ LC  G+V+EA  +   M ++   P    ++ L++ +     ++ A + F +M K
Sbjct: 254 NSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPK 313

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
             I  +V  YN LI A+CK    ++ + + + M  KGV P+  T N ++ GL  +G+ + 
Sbjct: 314 QRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEG 373

Query: 359 A-YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  RV     K  +AD  TY +++   C  GE++K  ++   M  K   PS  T++ +I+
Sbjct: 374 ARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMID 433

Query: 418 GLCDKG 423
           G   +G
Sbjct: 434 GYSKEG 439



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 36/227 (15%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++       KV EA    + M    +  N+   N LL+  CK+K V++A E+F
Sbjct: 249 NVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELF 308

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
           + M K R  P+  TY+IL++ + KD N+  A  ++R M+  G  PD+ TY  ++  LC+ 
Sbjct: 309 EDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRK 368

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G ++                            G  NR+        EM+   + AD+  Y
Sbjct: 369 GDLE----------------------------GARNRVS-------EMDTKHLKADLITY 393

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355
           N L+ + C   + K   R+L +M  KG+ P+  T N +++G    G 
Sbjct: 394 NILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGN 440



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           ++ KA  + K MK     P+  TF++LI+G C+   VS +  +  +M  +G++P+  T+ 
Sbjct: 195 KMYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYN 254

Query: 449 KLRKLLIKEGREDVLKFLQEKM 470
            L   L   G+ +    L+++M
Sbjct: 255 SLINGLCNNGKVNEATTLRDQM 276


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 159/342 (46%), Gaps = 3/342 (0%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  Y R   +E+A      M  +    +  A N L+ ALC+   V  A  + D M
Sbjct: 130 TYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGM 189

Query: 193 KDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
             R   PD  TY+ILL+   K     +A E+   M   GC P+ VTY +++D +C+ G V
Sbjct: 190 LCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDV 249

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
           D+A  ++ S+ S  C+P +  Y+ ++  +    R  DA +   EM +     + A  N +
Sbjct: 250 DQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVI 309

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-C 370
           I   C+    + V   L+ M+  G   N  T N +++G+  +G  D A  +   M    C
Sbjct: 310 INTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGC 369

Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
           + D  TY  ++K  C     E A ++   M     +P   TF+ +I+  C KG++  +  
Sbjct: 370 KPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFE 429

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMN 471
           + + M EKG  P+  T+  +   L K G+ E  L+ L E  N
Sbjct: 430 VFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMAN 471



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 167/364 (45%), Gaps = 2/364 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y+ ++++  K R Y+   +L++ MR +    N  T+ +I+    R   V++A    N
Sbjct: 198 VVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLN 257

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            +   G   N   +N +L   C  +    A EI D M ++   P+  T ++++    +  
Sbjct: 258 SLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKG 317

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L +      +M   GC  ++VTY  ++  +C+ G VD AL ++ +M S  C+P    Y+
Sbjct: 318 LLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYN 377

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            ++      +R EDA +  ++M +N  L D + +N +I  +C+       + V K M  K
Sbjct: 378 TVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEK 437

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394
           G  PNS T + I+ GL   G+ ++A  +   M          Y ++ +   +  ++E+  
Sbjct: 438 GCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVV 497

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454
           +V   ++     P    ++ ++ GLC  G    +  +L DM+  G  P   T+  L + L
Sbjct: 498 QVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGL 557

Query: 455 IKEG 458
             EG
Sbjct: 558 FYEG 561



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           NV T+  ++        V+ A+   + MQ +G   ++  +N +L  LC +     A+E+ 
Sbjct: 337 NVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELM 396

Query: 190 DCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
             M ++  +PD+ T++ ++  W +   + +A E+F++M + GCNP+  TY  ++  L KA
Sbjct: 397 IKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKA 456

Query: 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
           G++++AL ++  M +     T  +Y VL  +   E++IE+ V    +++ +GI     +Y
Sbjct: 457 GKMEQALELLNEMANKGFN-TDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLY 515

Query: 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368
           N ++   C+  K      VL DM S G  P+  T  I++ GL   G + EA  +  R   
Sbjct: 516 NTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSR--- 572

Query: 369 LCEAD 373
           LC  D
Sbjct: 573 LCSRD 577



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 126/264 (47%), Gaps = 14/264 (5%)

Query: 212 KDPNLPRAREIFREMVDTG-----------CNPDIV--TYGIMVDVLCKAGRVDEALGIV 258
           + P++P A  + R++   G           C P+    TYG +VD  C+AG +++A  +V
Sbjct: 92  RPPDVPLANRLVRDLCRRGRPADAARVVEACGPEATAATYGALVDGYCRAGLLEDARRVV 151

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
             M + V   +++ ++ L+H      R+ DA+     M   G   DV  YN L+ A CK 
Sbjct: 152 GGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKG 211

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
             ++    ++  M ++G  PN+ T N+I++ +   G+ D+A  +   +  + C+ +   Y
Sbjct: 212 RGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNY 271

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
             ++K FC       A ++   M  +   P+  T +V+IN LC KG++    + LE M +
Sbjct: 272 NTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSK 331

Query: 438 KGIRPSGETFGKLRKLLIKEGRED 461
            G   +  T+  +   + ++G  D
Sbjct: 332 HGCTANVVTYNAVISGMCEQGNVD 355



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 99/211 (46%), Gaps = 1/211 (0%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           Y+++++ L    +++   +L+  M +  R+ +  TF  I+  + +   + +A   F  M 
Sbjct: 376 YNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMP 435

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           + G   N   ++ ++  L K+  + +A E+ + M ++     K Y +L E   K+  +  
Sbjct: 436 EKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEE 495

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
             ++  ++ D+G +P  V Y  ++  LC+ G+ D A+ ++  M S  C P    Y +L+ 
Sbjct: 496 VVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIE 555

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
               E   ++A +    +    +L++  + N
Sbjct: 556 GLFYEGYSKEARELLSRLCSRDVLSNSLIKN 586


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 174/369 (47%), Gaps = 14/369 (3%)

Query: 96  SVRAYHSMIESLAKIR---QYQIMWDLVNAMRTKRMLNVE----TFCIIMRKYARVQKVE 148
           SVRA++ ++ ++++ R     +++  L N M  +  + V     T+ I++  + R+ +++
Sbjct: 50  SVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFTYTILIGCFCRMGRLK 109

Query: 149 EAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSI 205
                F ++ K G   N    F+ LL  LC +K V +A +I       F   PD  +YSI
Sbjct: 110 HGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSI 169

Query: 206 LLEGWGKDPNLPRAREIFREMVDTG---CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           LL+G+  +     A E+   M D G     P++VTY  ++D LCKA  VD A G+ + M 
Sbjct: 170 LLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMI 229

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               RP +  Y+ L+H Y    + ++ V    EM  +G+  D  +Y  L+   CK  +  
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCT 289

Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMI 381
               +   +  KG+ PN     I+L+G    G   E +     M+      D   + +M 
Sbjct: 290 EARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMF 349

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
             + +   +++A  ++  M+ +R  P++ T+  LI+ LC  G V D+ +    MI++G+ 
Sbjct: 350 CAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMT 409

Query: 442 PSGETFGKL 450
           P    F  L
Sbjct: 410 PDIFVFSSL 418



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 165/343 (48%), Gaps = 3/343 (0%)

Query: 119 LVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
           + + MR +R+  N+ T+  ++    ++ +V++AV  FN M   G+T ++  F+ L+  LC
Sbjct: 364 IFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLC 423

Query: 178 KSKNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
                 KA+E+F  + D+ I  D+  ++ L+    ++  +  A+ +   M+  G  PD++
Sbjct: 424 TVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVI 483

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           +Y  +VD  C  GR+DEA  ++  + S   +P    Y+ L+H Y    RI+DA   F EM
Sbjct: 484 SYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREM 543

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              G+  DV  YN ++    +  +F     +   M +     N  T NII+NGL      
Sbjct: 544 LMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFV 603

Query: 357 DEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415
           DEA+++F  +  K  + D  T  +MI    +GG  E A  ++  +     +P + T+ ++
Sbjct: 604 DEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLI 663

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
              L  +G + +   L   M E G  P+      L + L+  G
Sbjct: 664 AENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRG 706



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 166/339 (48%), Gaps = 2/339 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F I+   YA+   ++EA++ F+ M++  ++ N+  +  L+ ALCK   V  A   F+ M 
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 194 DR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           D    PD   +S L+ G        +A E+F E++D G   D V +  ++  LC+ GRV 
Sbjct: 405 DEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVM 464

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++  M     RP    Y+ LV  + +  RI++A      +   G+  D   YN L+
Sbjct: 465 EAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLL 524

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
             +CKA +  + Y + ++M  KG+ P+  T N IL+GL   G   EA  ++  MI    +
Sbjct: 525 HGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQ 584

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            +  TY ++I   C+   +++AFK++  +  K     + T +++I  L   G   D+  L
Sbjct: 585 MNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDL 644

Query: 432 LEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
              +   G+ P  ET+  + + LIKEG  + L  L   M
Sbjct: 645 FATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAM 683



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 38/383 (9%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
           ++  +V  Y ++I+ L K +       +   M  K +  N  T+  ++  Y  + K +E 
Sbjct: 197 SHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEV 256

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEG 209
           V     M  +G+  +   +  LL  LCK+    +A+ IFD +  + I P+   Y ILL G
Sbjct: 257 VQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHG 316

Query: 210 WGKDPNLPRAREIFREMVDTGCNPD----------------------------------- 234
           +  + +L         MV  G +PD                                   
Sbjct: 317 YATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPN 376

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
           IVTYG ++D LCK GRVD+A+     M      P  F++S LV+     ++ E A + F 
Sbjct: 377 IVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFF 436

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           E+   GI  D   +N L+   C+  +     R++  M   GV P+  + N +++G    G
Sbjct: 437 EVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTG 496

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
             DEA ++   ++ +  + D  TY  ++  +C+   ++ A+ +++ M +K   P + T++
Sbjct: 497 RIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYN 556

Query: 414 VLINGLCDKGIVSDSCVLLEDMI 436
            +++GL   G  S++  L   MI
Sbjct: 557 TILHGLFQTGRFSEAKELYLSMI 579



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 164/338 (48%), Gaps = 7/338 (2%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG---VTQNLAAFNGLLSALCKSKNVRKAQ 186
           +V ++ I+++ +   ++ EEA+   ++M   G    T N+  +  ++  LCK++ V +A+
Sbjct: 163 DVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAK 222

Query: 187 EIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245
            +F  M D+ + P++ TY+ L+ G+          ++ +EM   G  PD   Y +++D L
Sbjct: 223 GVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYL 282

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE-MEKNGILAD 304
           CK GR  EA  I  S+     +P   IY +L+H Y  E  + + + +FL+ M  NG+  D
Sbjct: 283 CKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSE-MHSFLDLMVGNGVSPD 341

Query: 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
             ++N +  A+ K         +   M  + ++PN  T   +++ L   G  D+A   F 
Sbjct: 342 HHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFN 401

Query: 365 RMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
           +MI +    D   ++ ++   C   + EKA +++  +  +        F+ L+  LC +G
Sbjct: 402 QMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREG 461

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            V ++  L++ M+  G+RP   ++  L       GR D
Sbjct: 462 RVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRID 499



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 144/307 (46%), Gaps = 14/307 (4%)

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
            ++ + Q + DL+  +R     +V ++  ++  +    +++EA    +V+   G+  +  
Sbjct: 461 GRVMEAQRLIDLM--LRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKV 518

Query: 168 AFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
            +N LL   CK++ +  A  +F + +     PD  TY+ +L G  +      A+E++  M
Sbjct: 519 TYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSM 578

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +++    +I TY I+++ LCK   VDEA  +  S+ S   +   F  ++++       R 
Sbjct: 579 INSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRK 638

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           EDA+D F  +   G++ DV  Y  +     K    + +  +   M   G APNSR  N +
Sbjct: 639 EDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNAL 698

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +  L+ RG+ + A     ++  K    +A T +M+I ++ +G          +Y +L + 
Sbjct: 699 VRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRG----------EYQQLAKS 748

Query: 406 IPSMHTF 412
           +P  + F
Sbjct: 749 LPEKYHF 755



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 22/261 (8%)

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR-------P 268
           L  A ++F EM+       +  +  ++  + +A R   A  +V S+ + + R       P
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTAVSRA-RCSSASELVVSLFNRMIRECSIKVAP 90

Query: 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKANKFKNVYRV 327
           +SF Y++L+  +    R++     F  + K G  + D  +++ L+   C A +      +
Sbjct: 91  SSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDI 150

Query: 328 L-KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD--------TYT 378
           L + M   G  P+  + +I+L G       +EA  +   M      D D        TYT
Sbjct: 151 LLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMAD----DGDGSHTPNVVTYT 206

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I   C+   +++A  V+++M  K   P+ HT++ LI+G    G   +   +L++M   
Sbjct: 207 TVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTH 266

Query: 439 GIRPSGETFGKLRKLLIKEGR 459
           G++P    +  L   L K GR
Sbjct: 267 GLQPDCYIYAVLLDYLCKNGR 287



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC-NIILNGLIGRGETDEAYRVF-RR 365
           Y  LIG FC+  + K+ +     +   G   N     + +L GL      DEA  +  RR
Sbjct: 95  YTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRR 154

Query: 366 MIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK---RFIPSMHTFSVLINGLCD 421
           M +  C  D  +Y++++K FC     E+A ++   M         P++ T++ +I+GLC 
Sbjct: 155 MPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQEKMNLLVKEPLC 479
             +V  +  + + MI+KG+RP+  T+  L    +  G+ ++V++ LQE M+    +P C
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQE-MSTHGLQPDC 272


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 208/512 (40%), Gaps = 86/512 (16%)

Query: 33  DAAKSISKIMLSSPKVVLDTALDQSGIRVS-PEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
           + A  + K++ S P+       D        P    ++L++  N   L+  FF W   Q 
Sbjct: 59  EIAAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNV-FLSLRFFLWLSSQP 117

Query: 92  NY-EHSV---RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147
            +  H V   + + +++E+ A +     ++    +     + N       +R       V
Sbjct: 118 EFLPHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENY------IRCVCEGGLV 171

Query: 148 EEAVYTFNVMQKYGV-----TQNLA---------------AFNG---------------- 171
           EEAVYTF+++++ G      T N A                + G                
Sbjct: 172 EEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVG 231

Query: 172 -LLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L+ A C    V +A EI    ++D   P +  ++ L+ G+ K+ N  R  E+   M+  
Sbjct: 232 YLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVK 291

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
             NPDI TY  +++  CK     +A  +  ++      P   +Y+ L+H +    ++EDA
Sbjct: 292 NRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDA 351

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
              + EM   G L +   YN LI  FCK        ++ K M   G    + +CN ++ G
Sbjct: 352 SKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILG 411

Query: 350 LIGRGETDEAYRVFRRM------------------------------------IKLCEAD 373
           L   G TDEAY  FR M                                     K  +  
Sbjct: 412 LCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPS 471

Query: 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
             +Y  +I+  CQ G +++A ++W  M  +   P + T   +I+GLC++G V +    L 
Sbjct: 472 TSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLI 531

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
            M++  ++P  ETF KL + LI+ G+E +L+ 
Sbjct: 532 TMLKSNLKPQKETFYKLIQSLIQIGKELLLEL 563



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 3/242 (1%)

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +P+  +    +  +C+ G V+EA+     +     RP    ++    +     R +    
Sbjct: 152 SPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWK 211

Query: 292 TFLEMEKNGILADVAMYNA--LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
            +  M + G+  DV +     LI AFC  NK    Y +L+     G+ P +   N +++G
Sbjct: 212 LYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISG 271

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
                       +   MI K    D  TY  +I  FC+     +AF+V+  +K + + P 
Sbjct: 272 FCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPD 331

Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
           M  ++ LI+G C  G + D+  L  +MI+KG  P+  ++  L     K G  D    L +
Sbjct: 332 MVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYK 391

Query: 469 KM 470
           KM
Sbjct: 392 KM 393


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 183/380 (48%), Gaps = 39/380 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V T+  ++    +  K +EA      +   G+  +   +N L++  CK   V+ A+ I 
Sbjct: 285 DVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERIL 344

Query: 190 -DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV------------ 236
            + + + F+PD  TY  L++G   +    RA  +F E +  G  P+++            
Sbjct: 345 VNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQ 404

Query: 237 -----------------------TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
                                  T+ I+V+ LCK G V +A G+VK M S    P  F +
Sbjct: 405 GLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTF 464

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           ++L+H Y  + ++E+A++    M  NG+  DV  YN+L+   CK +K+++V    K M  
Sbjct: 465 NILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVE 524

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEK 392
           KG APN  T NI+L  L    + D+A  +   M  K    DA T+  +I  FC+ G+L+ 
Sbjct: 525 KGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDG 584

Query: 393 AFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
           A+ +++ M+    +  S  T++++I+   +K  V+ +  L ++M+++ + P G T+  + 
Sbjct: 585 AYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMV 644

Query: 452 KLLIKEGREDV-LKFLQEKM 470
               K G  D+  KFL E M
Sbjct: 645 DGFCKTGNVDLGYKFLLEMM 664



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 4/348 (1%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y S+I+ L    +      L N    K +  NV  +  +++  +    + EA    + M
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEM 417

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
            + G+   +  FN L++ LCK   V  A  +   M  + + PD  T++IL+ G+     +
Sbjct: 418 SEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKM 477

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A EI   M+D G +PD+ TY  +++ LCK  + ++ +   K+M    C P  F +++L
Sbjct: 478 ENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS-KG 335
           + +    ++++ A+    EM+   +  D   +  LI  FCK       Y + + M     
Sbjct: 538 LESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYM 597

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAF 394
           V+ ++ T NII++    +     A ++F+ M+  C   D  TY +M+  FC+ G ++  +
Sbjct: 598 VSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGY 657

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           K    M    FIPS+ T   +IN LC +  V ++  ++  M++KG+ P
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 174/418 (41%), Gaps = 74/418 (17%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---RMLNVETFCI 136
           A   F    K+  ++H++  Y S+IE L    +++ M +++  MR      ML    +  
Sbjct: 23  ALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLE-GVYVG 81

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196
            M+ Y R  KV+EAV  F  M  Y     + ++N ++S L  S    +A +++  M+DR 
Sbjct: 82  AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR- 140

Query: 197 IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256
                                            G  PD+ ++ I +   C+  R   AL 
Sbjct: 141 ---------------------------------GITPDVYSFTIRMKSFCRTSRPHAALR 167

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           ++ +M S  C      Y  +V  +  EN  ++  + F +M  +G+   ++ +N L+   C
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLC 227

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-------- 368
           K    K   ++L  +  +GV PN  T N  + GL  +GE D A R+  R+I         
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVV 287

Query: 369 --------LC--------------------EADADTYTMMIKMFCQGGELEKAFKVWKYM 400
                   LC                    E D+ TY  +I  +C+GG ++ A ++    
Sbjct: 288 TYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNA 347

Query: 401 KLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
               F+P   T+  LI+GLC +G  + +  L  + + KGI+P+   +  L K L  +G
Sbjct: 348 VFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQG 405



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 4/372 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V ++   ++S  +  +      L+N M ++   +NV  +C ++  +      +E    F 
Sbjct: 146 VYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFG 205

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDP 214
            M   GV+  L+ FN LL  LCK  +V++ +++ D  +K   +P+  TY+  ++G  +  
Sbjct: 206 KMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKG 265

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +   ++D G  PD+VTY  ++  LCK  +  EA   +  + +    P SF Y+
Sbjct: 266 ELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYN 325

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
            L+  Y     ++ A    +    NG + D   Y +LI   C   +      +  +   K
Sbjct: 326 TLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGK 385

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G+ PN    N ++ GL  +G   EA ++   M  K    +  T+ +++   C+ G +  A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453
             + K M  K + P + TF++LI+G   +  + ++  +L+ M++ G+ P   T+  L   
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNG 505

Query: 454 LIKEGR-EDVLK 464
           L K  + EDV++
Sbjct: 506 LCKTSKYEDVME 517



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 44/285 (15%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V+ ++ ++  L K+        LV  M +K    ++ TF I++  Y+   K+E A+   +
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD 485

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDP 214
           VM   GV  ++  +N LL+ LCK+       E +  M ++   P+  T++ILLE   +  
Sbjct: 486 VMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYH 545

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS----TVCRPTS 270
            L +A  +  EM +   NPD VT+G ++D  CK G +D A  + + M+     +   PT 
Sbjct: 546 KLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPT- 604

Query: 271 FIYSVLVHTYG-------VENRIEDAVDT----------------------------FLE 295
             Y++++H +         E   ++ VD                              LE
Sbjct: 605 --YNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLE 662

Query: 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
           M +NG +  +     +I   C  ++      ++  M  KG+ P +
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA 707



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 41/288 (14%)

Query: 179 SKNVRKAQEIFDCMK--DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236
            K+  KA E+F+ M+  D F     TY  ++E  G         E+  +M     N   +
Sbjct: 17  QKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNH--M 74

Query: 237 TYGIMVDVL---CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
             G+ V  +    + G+V EA+ + + MD   C PT F Y+ ++         + A   +
Sbjct: 75  LEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVY 134

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
           + M   GI  DV  +   + +FC+ ++     R+L +M+S+G   N      ++ G    
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEE 194

Query: 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
              DE Y +F                  KM   G  L                  + TF+
Sbjct: 195 NFKDEGYELFG-----------------KMLASGVSL-----------------CLSTFN 220

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
            L++ LC KG V +   LL+ +I++G+ P+  T+    + L ++G  D
Sbjct: 221 KLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELD 268


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 190/394 (48%), Gaps = 4/394 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A+  F+  +K     + V  Y ++I+SLAK  + + +  L+  M ++ + +++ T+  +M
Sbjct: 293 AYALFREMDKVGAAPNHV-TYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALM 351

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
               +  K +E   T        ++ N   +  L+ ALCK+ NV +A+++   M+++ I 
Sbjct: 352 DWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSIS 411

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T+S ++ G+ K   L +A E  R M + G NP++VTYG ++D   K    D AL +
Sbjct: 412 PNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEV 471

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M     +   FI   LV+      +IE+A+  F +   +G+  D   Y  LI    K
Sbjct: 472 YHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFK 531

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
           A      ++  +++  + + P++   N+ +N L   G+  EA      M  +  + D  T
Sbjct: 532 AGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQST 591

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  MI   C+ GE  KA K+   MK+    P++ T++ L+ GL   G V  +  LL +M+
Sbjct: 592 YNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMV 651

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             G  PS  T  ++ +   +  R DV+  + E M
Sbjct: 652 SAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWM 685



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 166/352 (47%), Gaps = 15/352 (4%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           ++V  +  ++  + R  +V+ A    ++M++ GV  N+A +   +   C++K V +A ++
Sbjct: 202 MDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDL 261

Query: 189 FDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           ++ M ++  + D  T S L+ G  +D     A  +FREM   G  P+ VTY  ++D L K
Sbjct: 262 YEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAK 321

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
           AGR  E L ++  M S         Y+ L+   G + + ++  DT      + +  +   
Sbjct: 322 AGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVT 381

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI A CKA+      +VL +M  K ++PN  T + ++NG + RG  D+A   ++RM+
Sbjct: 382 YTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE-YKRMM 440

Query: 368 K--LCEADADTYTMMIKMFCQGGELEKAFKVWKYM-----KLKRFIPSMHTFSVLINGLC 420
           K      +  TY  +I  F +    + A +V+  M     K+ +FI        L+NGL 
Sbjct: 441 KERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI-----VDSLVNGLR 495

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMN 471
             G + ++  L +D    G+      +  L   L K G      KF QE M+
Sbjct: 496 QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 158/354 (44%), Gaps = 43/354 (12%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSIL-LEGWGKD 213
           M K GV  +    N LL+ LC++  V  A  + D       ++  + T S+L + G+G  
Sbjct: 126 MCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRAGGITPWMSSAGTLSLLDIAGFG-- 183

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
            + P A  +   M   G   D+V Y  +V   C+AG+VD A G++  M      P    Y
Sbjct: 184 -DTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATY 242

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           +  +  Y     +E+A D +  M +NG+L DV   +AL+   C+  +F   Y + ++M+ 
Sbjct: 243 TPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302

Query: 334 KGVAPNSRT-CNII-----------LNGLIG-----------------------RGETDE 358
            G APN  T C +I           L  L+G                       +G+TDE
Sbjct: 303 VGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE 362

Query: 359 AYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
                R  +      +  TYT++I   C+   +++A +V   M+ K   P++ TFS +IN
Sbjct: 363 VKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVIN 422

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKM 470
           G   +G++  +      M E+GI P+  T+G L     K +G++  L+   + +
Sbjct: 423 GFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDML 476



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 176/400 (44%), Gaps = 16/400 (4%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           G++V+  IV+ ++   R  G +  A   FK A         V  Y ++I+ L K      
Sbjct: 479 GVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVN-YTTLIDGLFKAGDMPT 537

Query: 116 MWDLVNAMRTKRML------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            +     +  + ML      NV   C+ M     + K +EA      M+  G+  + + +
Sbjct: 538 AFKFGQELMDRNMLPDAVVYNVFINCLCM-----LGKFKEAKSFLTEMRNMGLKPDQSTY 592

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N ++ + C+     KA ++   MK   I P+  TY+ L+ G      + +A+ +  EMV 
Sbjct: 593 NTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVS 652

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P  +T+  ++    ++ R+D  L I + M +        +Y+ L+           
Sbjct: 653 AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRK 712

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     EM  +GI  D   +NALI   CK++   N +     M  + ++PN  T N +L 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           GL   G   EA  V   M K   E +  TY ++     +     +A +++  M  K F+P
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            + T++ LI+     G+++ +  L +DM ++G+ P+  T+
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTY 872



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 184/412 (44%), Gaps = 10/412 (2%)

Query: 55  DQSGIRVSPEIVE--DVLEKFRNAGTLAFCF-FKWAEKQQNYEHSVRAYHSMIESLAKIR 111
           D SG  +S + V    +++    AG +   F F      +N       Y+  I  L  + 
Sbjct: 509 DASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLG 568

Query: 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170
           +++     +  MR   +  +  T+  ++  + R  +  +A+   + M+   +  NL  +N
Sbjct: 569 KFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYN 628

Query: 171 GLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
            L++ L  +  V KA+ + + M    F P S T+  +L+   +   L    +I   M++ 
Sbjct: 629 TLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNA 688

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G + DI  Y  ++ VLC  G   +A  +++ M  +   P +  ++ L+  +   + +++A
Sbjct: 689 GLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNA 748

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
             T+ +M    I  ++A +N L+G      +      VL +M   G+ PN+ T +I+  G
Sbjct: 749 FATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATG 808

Query: 350 LIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
              +    EA R++  M+ K       TY  +I  F + G + +A +++K M+ +   P+
Sbjct: 809 HGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPT 868

Query: 409 MHTFSVLINGLCD--KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
             T+ +L++G      G     C  L+DM EKG  PS  T   + +   K G
Sbjct: 869 SCTYDILVSGWSRIRNGTEVKKC--LKDMKEKGFSPSKGTLSFICRAFSKPG 918



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 122/280 (43%), Gaps = 35/280 (12%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G+  ++  +N LL  LC     RKA  + + M    I PD+ T++ L+ G  K  +
Sbjct: 685 MMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSH 744

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   + +M+    +P+I T+  ++  L   GR+ EA  ++  M+ +   P +  Y +
Sbjct: 745 LDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDI 804

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L   +G ++   +A+  + EM   G +  V+ YNALI  F KA        + KDM  +G
Sbjct: 805 LATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRG 864

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395
           V P S T +I+++G          +   R                      G E++K  K
Sbjct: 865 VHPTSCTYDILVSG----------WSRIR---------------------NGTEVKKCLK 893

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
               MK K F PS  T S +       G+   +  LL+++
Sbjct: 894 ---DMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 9/299 (3%)

Query: 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           A+ N LL + C+ + +R A  +    +    P +  Y+ILL       + P    +  EM
Sbjct: 74  ASLNALLYSHCRLRLLRPAIALLRSSR----PTTVAYNILLAALSDHAHAP---AVLAEM 126

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
              G   D VT   ++  LC+ G+VD A  +           +S     L+   G  +  
Sbjct: 127 CKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRAGGITPWMSSAGTLSLLDIAGFGD-T 185

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
             A+     M   G+  DV  YN L+  FC+A +      VL  M   GV PN  T    
Sbjct: 186 PAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPF 245

Query: 347 LNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
           +         +EA+ ++  M++     D  T + ++   C+ G   +A+ +++ M     
Sbjct: 246 IVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGA 305

Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464
            P+  T+  LI+ L   G   +   LL +M+ +G+     T+  L   L K+G+ D +K
Sbjct: 306 APNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVK 364


>gi|359474664|ref|XP_003631508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g80550, mitochondrial-like [Vitis vinifera]
          Length = 384

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 170/343 (49%), Gaps = 15/343 (4%)

Query: 56  QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSV-RAYHSMIESLAKIRQYQ 114
           QS   +SP  +   L  + N    A  FF W + Q  + H    +Y+ MI+ L+K  ++ 
Sbjct: 23  QSSPIISP--LRQTLSCYANDWKRALEFFNWVQTQSGFNHPTDTSYNRMIDILSKFFEFY 80

Query: 115 IMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
           ++W L+  M+ +   + N  TFCI+ + YA    VEEA+  ++  +++   ++   ++ L
Sbjct: 81  LVWVLIQRMKARPSCVPNHATFCIVFKHYASAHLVEEAMNAYDRTEEFNF-KDETRYSNL 139

Query: 173 LSALCKSKNVRKAQEIF--DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM-VDT 229
           + ALC+ K+V +A+E+F  +     F  D K Y ++L GW K     + RE + EM   +
Sbjct: 140 IDALCEYKHVIEAEELFIRESKDLVFNDDVKIYDMILRGWFKMGXWKKCREFWEEMDWRS 199

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           GC   + +Y I +D+ CK GR   A+ + K M +   R     Y+ ++   G+   ++ +
Sbjct: 200 GCK-SLCSYSIYMDIQCKGGRPWRAVKLYKEMKTXGIRLDVVAYNAVIRAIGLSEGVDFS 258

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +  + EM++ G   +V  Y+ +I   C+  + +  Y VL  M  K  APN  T +     
Sbjct: 259 IRVYREMKELGCEPNVVTYDTIIKLLCEHGRIREAYGVLDQMREKDCAPNVMTYHCFFGC 318

Query: 350 LIGRGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGEL 390
           L    +  + +R+F RMI         DTY M++K F + G L
Sbjct: 319 L---EKPKQIFRMFDRMINSVGGLGRMDTYVMLMKKFGRWGIL 358



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 22/258 (8%)

Query: 215 NLPRAREIFREM-VDTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDS-TVCRPTSF 271
           +  RA E F  +   +G N P   +Y  M+D+L K         +++ M +   C P   
Sbjct: 41  DWKRALEFFNWVQTQSGFNHPTDTSYNRMIDILSKFFEFYLVWVLIQRMKARPSCVPNHA 100

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV--LK 329
            + ++   Y   + +E+A++ +   E+     D   Y+ LI A C+   +K+V     L 
Sbjct: 101 TFCIVFKHYASAHLVEEAMNAYDRTEEFN-FKDETRYSNLIDALCE---YKHVIEAEELF 156

Query: 330 DMNSKGVAPNS--RTCNIILNGLIGRGETDEAYRVFRRM------IKLCEADADTYTMMI 381
              SK +  N   +  ++IL G    G   +    +  M        LC     +Y++ +
Sbjct: 157 IRESKDLVFNDDVKIYDMILRGWFKMGXWKKCREFWEEMDWRSGCKSLC-----SYSIYM 211

Query: 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441
            + C+GG   +A K++K MK       +  ++ +I  +     V  S  +  +M E G  
Sbjct: 212 DIQCKGGRPWRAVKLYKEMKTXGIRLDVVAYNAVIRAIGLSEGVDFSIRVYREMKELGCE 271

Query: 442 PSGETFGKLRKLLIKEGR 459
           P+  T+  + KLL + GR
Sbjct: 272 PNVVTYDTIIKLLCEHGR 289


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 214/466 (45%), Gaps = 41/466 (8%)

Query: 50  LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
           LD  LD     ++P I  +V+    N   LA  FF+ +    N  HS R Y  ++ SL++
Sbjct: 91  LDACLDYFSKTLTPSIAFEVVRGLNNP-ELALKFFQLSRVNLNLCHSFRTYSFLLRSLSE 149

Query: 110 IRQYQ-------------------IMWDLVNAMRTKRMLNVETFCI------------IM 138
           +  ++                   ++  LV++       N+    +            ++
Sbjct: 150 MGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVDGVEFSLVVYNKLL 209

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
            +  R  +V+EAV  F          +  +FN L+  LC+   V KA E+F+ M+     
Sbjct: 210 NQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCS 269

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDVLCKAGRVDEALG 256
           PD  TY+ L+ G+ +   + R  ++ +E++     +PD+VTY  ++   CK G++++A  
Sbjct: 270 PDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASI 329

Query: 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316
           +  +M S+  +P +F +++L++ +G    +  A + + EM   G   D+  + +LI   C
Sbjct: 330 LFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHC 389

Query: 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADA 374
           +  K +   ++  ++N++ ++PN  T  I+ N L       EA R F R +K     A  
Sbjct: 390 RTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEA-RGFLRDLKWRHIVAQP 448

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
             Y  +I  FC+ G +++A  +   M+ KR  P   T+++LI G C KG +S++  +   
Sbjct: 449 FMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNR 508

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGRED----VLKFLQEKMNLLVKE 476
           M+  G  P   T   L   L+K G  +    +++   E  NL +K 
Sbjct: 509 MLGTGCAPDSITMTSLISCLLKAGMPNEAYRIMQIASEDFNLGLKS 554


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 165/319 (51%), Gaps = 7/319 (2%)

Query: 146 KVEEAVYTFNVMQKYGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKT 202
           +V++AV  F    + GV + ++ +FN ++  +CK  +V+KA E+ + M D F   PD+ T
Sbjct: 213 RVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERM-DEFGCSPDTVT 271

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
           ++IL+ G  +   + + RE+ R +   G C P++VTY  ++   CKAGR+++A+ +   M
Sbjct: 272 HNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDM 331

Query: 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321
            +    P    Y+VL++ YG    +  AV  + +M     L DV  +++LI  +C+  + 
Sbjct: 332 VAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQL 391

Query: 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--ADADTYTM 379
            +  ++  +M    + PN+ T  II++    +  + EA    ++M    +    A  Y  
Sbjct: 392 DDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNP 451

Query: 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +I + C+GG++++A  +   M+ K   P  +T+++LI G C KG ++++      M+E G
Sbjct: 452 VIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETG 511

Query: 440 IRPSGETFGKLRKLLIKEG 458
             P           L+K G
Sbjct: 512 CSPDSIVVNSFISCLLKSG 530



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 150/311 (48%), Gaps = 7/311 (2%)

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFRE 225
           ++  ++S +C+S     A ++FD M D+  + P+++  S L         L  A  +  +
Sbjct: 129 SYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSK 188

Query: 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS-MDSTVCRPTSFIYSVLVHTYGVEN 284
               GC+ +   Y  ++D+    GRV +A+ + +  +   V  P  + ++V++       
Sbjct: 189 ASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVG 248

Query: 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTC 343
            ++ A++    M++ G   D   +N L+   C+A +      VL+ +   GV  PN  T 
Sbjct: 249 DVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTY 308

Query: 344 NIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402
             +++G    G  ++A  V+  M+ +    +  TY ++I  + + G +  A  V++ M L
Sbjct: 309 TSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMIL 368

Query: 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRE-D 461
           +R +P + TFS LI+G C  G + D+  +  +M +  I+P+  TF  +     K+ R  +
Sbjct: 369 RRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGE 428

Query: 462 VLKFLQEKMNL 472
            L FL+ KMN+
Sbjct: 429 ALHFLK-KMNM 438



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 2/239 (0%)

Query: 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187
           M NV T+  ++  Y +  ++E+A+  +N M   G + N+  +N L++   K+ N+  A  
Sbjct: 302 MPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVA 361

Query: 188 IFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246
           ++  M   R +PD  T+S L++G+ +   L  A +I+ EM      P+  T+ I++   C
Sbjct: 362 VYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFC 421

Query: 247 KAGRVDEALGIVKSMD-STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           K  R  EAL  +K M+  T   P +FIY+ ++       ++++A    +EME+ G   D 
Sbjct: 422 KQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDK 481

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364
             Y  LI   C   +          M   G +P+S   N  ++ L+  G   E   + R
Sbjct: 482 YTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIMR 540


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 195/420 (46%), Gaps = 12/420 (2%)

Query: 61  VSPEIVED--VLEKFRNAG--TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIM 116
           V P++V    VL  F+N    + A  +F+   K  N        + +I  L K  QY   
Sbjct: 256 VGPDLVTHNIVLSAFKNGSQYSKAIAYFE-MMKGANIAPDTFTLNIVIHCLVKDGQYGEA 314

Query: 117 WDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
            +L+N+MR KR     +V T+  IM  Y    KVE+    F++M   GV  N+ ++N LL
Sbjct: 315 IELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALL 374

Query: 174 SALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN 232
            A         A  IF  +K   + PD  +Y+ LL  +G+     +ARE F+EM    C 
Sbjct: 375 GAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCR 434

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           P+IV+Y  ++D    AG   EA+ ++  M+     P     S L+   G   +I   +DT
Sbjct: 435 PNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITK-IDT 493

Query: 293 FLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            LE  K+ GI  ++  YN+ IG++     +     +   M +  V P++ T NI+++GL 
Sbjct: 494 ILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLC 553

Query: 352 GRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G+  E+ + F  M+ L      + Y+ +I  + + G+L +A   +  MK    +P + 
Sbjct: 554 KVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVL 613

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           T++ +I    D G   ++  L ++M    ++P       L + L +  + + +  L E M
Sbjct: 614 TYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELM 673



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 165/345 (47%), Gaps = 12/345 (3%)

Query: 110 IRQYQIMWDLVNAMRTKR-MLNVETFC-------IIMRKYARVQKVEEAVYTFNVMQKYG 161
           IR+      L +A+   R M N E +C       +++R +AR  ++++A   F  MQ++ 
Sbjct: 126 IREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWR 185

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAR 220
              +   +N L+ A  ++   R A  I D M    IP S+ TY+ ++   G   N  +A 
Sbjct: 186 CKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKAL 245

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+ ++M   G  PD+VT+ I++       +  +A+   + M      P +F  ++++H  
Sbjct: 246 ELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCL 305

Query: 281 GVENRIEDAVDTFLEM--EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
             + +  +A++    M  ++     DV  Y +++ ++    K ++   V   M ++GV P
Sbjct: 306 VKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKP 365

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVW 397
           N  + N +L     RG   +A  +F+ + +     D  +YT ++  + + G+ EKA + +
Sbjct: 366 NIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAF 425

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
           K M+     P++ +++ LI+     G+  ++  LL +M + GI P
Sbjct: 426 KEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPP 470



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 167/375 (44%), Gaps = 11/375 (2%)

Query: 76  AGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVE 132
           AG+L  A   F+W + Q+NY      Y  MI   A+  Q      L   M+  R   + +
Sbjct: 132 AGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDAD 191

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
            +  ++  +AR  +   A+   + M +  +  +   +N +++A   + N +KA E+   M
Sbjct: 192 IYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 251

Query: 193 -KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
            ++   PD  T++I+L  +       +A   F  M      PD  T  I++  L K G+ 
Sbjct: 252 TRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQY 311

Query: 252 DEALGIVKSM--DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            EA+ ++ SM    T C P    Y+ ++H+Y V  ++ED    F  M   G+  ++  YN
Sbjct: 312 GEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYN 371

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK- 368
           AL+GA+       +   + K +   G+ P+  +   +LN     G+ ++A   F+ M K 
Sbjct: 372 ALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKN 431

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN--GLCDKGIVS 426
            C  +  +Y  +I  +   G  ++A  +   M+     P + + S L+   G C +    
Sbjct: 432 SCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKI 491

Query: 427 DSCVLLEDMIEKGIR 441
           D+  +LE    +GI+
Sbjct: 492 DT--ILEAAKSRGIK 504



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/424 (20%), Positives = 178/424 (41%), Gaps = 40/424 (9%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRKYARVQKV 147
           KQ      V +Y +++ +  +  Q +   +    MR      N+ ++  ++  Y      
Sbjct: 394 KQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMF 453

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP-DSKTYSIL 206
           +EA+   + M+K G+  ++ + + LL+A  + + + K   I +  K R I  +   Y+  
Sbjct: 454 KEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSG 513

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           +  +    +  +A E++  M+ +  NPD VTY I++  LCK G+  E+L   + M     
Sbjct: 514 IGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRI 573

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
             T  +YS L+ +Y  + ++ +A  TF  M+++G L DV  Y A+I A+     ++N + 
Sbjct: 574 PLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWD 633

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------------------ 368
           + K+M    V P++  C+ ++  L  RG   E       ++K                  
Sbjct: 634 LFKEMEGNTVQPDAIICSSLMEAL-NRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASC 692

Query: 369 -------------------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
                              L      T   ++    + G+ E   K++  M        +
Sbjct: 693 SMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGV 752

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
            T++VL+  L   G       +L+ M + G+ P+   +  +   + ++   D +  +QEK
Sbjct: 753 STYTVLLRNLLAVGKWRKYIEVLQWMEDAGVSPTLYMYQNVLPYIWRDNSMDYVTLMQEK 812

Query: 470 MNLL 473
           +N L
Sbjct: 813 INSL 816



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 142/298 (47%), Gaps = 5/298 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           F  L+  +  + +++ A  +F  MK++  +   +  Y +++    +   + +AR +F EM
Sbjct: 122 FPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEM 181

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
            +  C PD   Y  ++    +AG+   A+ I+  M      P+   Y+ +++  G     
Sbjct: 182 QEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNW 241

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           + A++   +M +NG+  D+  +N ++ AF   +++       + M    +AP++ T NI+
Sbjct: 242 KKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIV 301

Query: 347 LNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403
           ++ L+  G+  EA  +   M +    C  D  TYT ++  +   G++E    V+  M  +
Sbjct: 302 IHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAE 361

Query: 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
              P++ +++ L+     +G+ +D+  + + + + G+RP   ++  L     + G+ +
Sbjct: 362 GVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPE 419


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 198/434 (45%), Gaps = 38/434 (8%)

Query: 60  RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDL 119
           ++S  +V  +L   +N G  A  FF WA  +Q++ H+V  Y+   E+L +  Q +  + L
Sbjct: 54  QLSQRLVGVILHMVKN-GESAMVFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRL 112

Query: 120 VNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
                 + ++ +  T+ I++R      K++ A   +  M   G+   +     LL+ALCK
Sbjct: 113 FKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCK 172

Query: 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238
           S N+  A   F+ M    IP + T++IL++G  +   +  A   F EM  T   P+  TY
Sbjct: 173 SGNLELALRYFEKMSS--IPCAATWTILIDGLFRAIRVDEACYYFEEMKHTAI-PNNWTY 229

Query: 239 GIMVDVLCKAGRVDEALGIVKSMD-STVCRPTSFI------------------------- 272
            ++++ L KAG+V EA  +++ M   T+   TS I                         
Sbjct: 230 TVVINGLVKAGKVAEAERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQ 289

Query: 273 -----YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
                Y+ L+H +     I+ A +   EM+ N  + D+  Y+ LI   C+A +      +
Sbjct: 290 GDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDL 349

Query: 328 LKDM-NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFC 385
           L  + N     PN  + N +++G       ++AY++F  M+   +  D  TY+ +I+  C
Sbjct: 350 LGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLC 409

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G   +A    + M  K+ +P +  +S +I+GLC  G +  +  + + M+  G +P+  
Sbjct: 410 NAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLA 469

Query: 446 TFGKLRKLLIKEGR 459
            +  L   L K GR
Sbjct: 470 VYNSLIYGLCKTGR 483



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 175/347 (50%), Gaps = 13/347 (3%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+  ++  + R+Q+++ A      M+      ++  ++ L++ LC++K + +A+++   +
Sbjct: 294 TYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTL 353

Query: 193 K--DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
           +  D   P+  +Y+ L++G+ K   +  A ++F EMV  G +PD+VTY  ++  LC AGR
Sbjct: 354 RNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGR 413

Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
             EA   ++ M      P   +YS ++        ++ A   F  M  NG   ++A+YN+
Sbjct: 414 ASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNS 473

Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA----YRVFRRM 366
           LI   CK  +  +    +K+M  +G +P+  T   ++ GL     TDEA     R   + 
Sbjct: 474 LIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQG 533

Query: 367 IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
           I++ E   +   ++  + C    LE+A +V + +      P+   ++ +I  LC +  ++
Sbjct: 534 IEISETSCN--VVIASLRC----LEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLA 587

Query: 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQEKMNL 472
           ++  LLEDMI  GI+P G T   L   + ++ +  V + FL+E + L
Sbjct: 588 EARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRL 634



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 42/363 (11%)

Query: 96  SVRAYHSMIESLAKIRQ----YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV 151
           +V +Y+++I+  +K  +    YQ+  ++V A +     +V T+  ++R      +  EA 
Sbjct: 362 NVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHP---DVVTYSTLIRGLCNAGRASEAH 418

Query: 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGW 210
                M    +   +  ++ ++S LC++  +  A  +FD M  +   P+   Y+ L+ G 
Sbjct: 419 SYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGL 478

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI-VKSMDS------ 263
            K   L  A+   +EM + GC+PD VTYG ++  LC+  R DEA  + V+S++       
Sbjct: 479 CKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISE 538

Query: 264 TVCR-------------------------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
           T C                          PT+F Y+ ++ +   EN + +A     +M  
Sbjct: 539 TSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIG 598

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            GI  D +  +AL+GA C+ +K       L++M   G  P+  T + +LN L   G+  E
Sbjct: 599 AGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSE 658

Query: 359 AYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           A+ V RR+I    C  D   Y  +I  +    ++E+A  V + +K K  I S+  ++ L+
Sbjct: 659 AHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLL 718

Query: 417 NGL 419
            GL
Sbjct: 719 KGL 721



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
           ET C ++   A ++ +E+A     V+   G +     +  ++ +LCK  N+ +A+++ + 
Sbjct: 538 ETSCNVV--IASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLED 595

Query: 192 MKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
           M    I PD  T   L+    +      A     EMV  G  P + TY  +++ L KAG+
Sbjct: 596 MIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGK 655

Query: 251 VDEALGIVKSMDS-TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
             EA  +++ + S T C P    Y  L+  Y  ++++E+A +   E++    +  +  YN
Sbjct: 656 PSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYN 715

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            L+    +    + VY +L++M       N  T NI++ G    G+TD A RV   M K+
Sbjct: 716 TLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKKV 775

Query: 370 CEADA 374
               A
Sbjct: 776 LTPSA 780



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%)

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
           TY    +   + G+ E+A++++K    +  IP   T+ +LI GLC+ G +  +C L E+M
Sbjct: 92  TYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEM 151

Query: 436 IEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471
           +++G+RP   T   L   L K G  ++     EKM+
Sbjct: 152 VDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMS 187



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 169 FNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
           + GL++A      V +A+ +   +K ++ I     Y+ LL+G  +  NL    E+ REM 
Sbjct: 679 YVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMK 738

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
                 +  T+ I++   C+ G+ D A+ ++  M   V  P++ I   LV       R +
Sbjct: 739 RNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKK-VLTPSAAIIKFLVDELARAEREQ 797

Query: 288 DAVD 291
           ++ D
Sbjct: 798 ESKD 801


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 159/315 (50%), Gaps = 3/315 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPN 215
           M  +G+  N+   + L+++ C    V  A  +    +K    PD+ T++ L+ G   +  
Sbjct: 87  MDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGK 146

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           +  A  +F +M+  G  PD+VTYG +++ LCK G    A+ ++ SM    C+P  F Y+ 
Sbjct: 147 IGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNT 206

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           ++ +   + ++ +A + F EM   GI  D+  YN+LI A C   ++K+V  +L +M    
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAF 394
           + P+  + N +++ L   G+  EA+ V  +MI+   E +  TYT ++   C   E+++A 
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL-RKL 453
           KV+  M  K  +P++ +++ LING C    +  +  L  +M  + + P   T+  L   L
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 386

Query: 454 LIKEGREDVLKFLQE 468
              E  +D +    E
Sbjct: 387 CHVERLQDAIALFHE 401



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 219/514 (42%), Gaps = 54/514 (10%)

Query: 5   YHSRN---KMISGCISFLRRYNSSEPSTEALDAAK---SISKIMLSSPKVVLDTALDQSG 58
           +HS++     I G IS   R    +P    +D  K   SI+K+   S  + L   +D  G
Sbjct: 32  FHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG 91

Query: 59  IRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESL---AKIRQYQ 114
           I  +   +  ++  F +   + F F   A+  +  ++     + ++I  +    KI +  
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEAL 151

Query: 115 IMWD--LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
            ++D  +    R     +V T+  ++    +V     A+     M +     N+ A+N +
Sbjct: 152 HLFDKMIGEGFRP----DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTI 207

Query: 173 LSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           + +LCK + V +A  +F  M  + I PD  TY+ L+              +  EMVD+  
Sbjct: 208 IDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKI 267

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
            PD+V++  +VD LCK G+V EA  +V  M      P    Y+ L+  + + + +++AV 
Sbjct: 268 MPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVK 327

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            F  M   G + +V  YN LI  +CK  +      +  +M  + + P++ T + +++GL 
Sbjct: 328 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 387

Query: 352 GRGETDEAYRVFRRMIK----------------LC--------------------EADAD 375
                 +A  +F  M+                 LC                    + D  
Sbjct: 388 HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 447

Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435
              + I   C+ GELE A  ++  +  K   P + T+S++INGLC +G++ ++  L  +M
Sbjct: 448 VNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREM 507

Query: 436 IEKGIRPSGETFGKLRKLLIKEGRED-VLKFLQE 468
            E G   +G  +  + +  ++       ++ LQE
Sbjct: 508 DENGCTLNGCIYNTITRGFLRNNETSRAIQLLQE 541



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 153/302 (50%), Gaps = 4/302 (1%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFN 155
           V ++++++++L K  +     D+V+ M  + +  NV T+  +M  +  + +++EAV  F+
Sbjct: 271 VVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD 330

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDP 214
            M   G   N+ ++N L++  CK + + KA  +F  M +   IPD+ TYS L+ G     
Sbjct: 331 TMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVE 390

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
            L  A  +F EMV     P++VTY I++D LCK   + EA+ ++K+++ +   P   + +
Sbjct: 391 RLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNN 450

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           + +        +E A D F  +   G+  DV  Y+ +I   C+        ++ ++M+  
Sbjct: 451 IAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDEN 510

Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGELEKA 393
           G   N    N I  G +   ET  A ++ + M+ +   ADA T T+ +KM    G L+++
Sbjct: 511 GCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG-LDQS 569

Query: 394 FK 395
            K
Sbjct: 570 LK 571


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 16/358 (4%)

Query: 93  YEHSVRAYHSMIESLAKIRQYQIMWDLVNAM-RTKRMLNVETFCIIMRKYARVQKVEEAV 151
           Y+ S+  + S++       +    + LV +M ++    NV  +  ++    +   V  A+
Sbjct: 131 YDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIAL 190

Query: 152 YTFNVMQKYG-VTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEG 209
              N M+K G +  +L  +N LL+ LC S   R+A  I  D  K R  PD  T++ L++ 
Sbjct: 191 ELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDA 250

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + K  NL  A+E++++M+ +   P+ VTY  +++ LC  GR+  A      M S  C P 
Sbjct: 251 FVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPN 310

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
              Y+ L++ +    R+ED +  F  M + G++ D   YN LI  +C+  K +    +  
Sbjct: 311 VVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFS 370

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-------TYTMMIK 382
            M S GV P+  T  I+L+GL   GE   A      M+K  +  +         Y +MI 
Sbjct: 371 WMVSCGVTPDIITHCILLHGLCVNGEIGSA------MVKFNDMRSGEKYLGIVAYNIMIH 424

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             C+  ++E+A++++  + ++   P   T++++I GLC  G   ++  L   M E GI
Sbjct: 425 GLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 175/354 (49%), Gaps = 3/354 (0%)

Query: 93   YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAV 151
            ++ S+    S++    +  ++Q    LV++M    +  NV  +  ++    + + +  A+
Sbjct: 681  FQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNAL 740

Query: 152  YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGW 210
              F  M+K G+  +   +N L+S LC S     A  +  D +K +  P+   ++ L++ +
Sbjct: 741  EIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTF 800

Query: 211  GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
             K+ NL  A+ +++EM+    +P+I+TY  +++  C  GR+ +A  +   M S  C P  
Sbjct: 801  VKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDV 860

Query: 271  FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
              Y+ L+  +    R+ED +  F EM   G++ D   YN LI  +C+A K     +V   
Sbjct: 861  VTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNR 920

Query: 331  MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389
            M   GV P+  T NI+L+ L   G+ ++A  +   + K   + D  TY ++I+  C+  +
Sbjct: 921  MVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDK 980

Query: 390  LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
            +++A+ +++ +  K        +  +I+GLC  G+  ++  L   M E G  PS
Sbjct: 981  VKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPS 1034



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 156/333 (46%), Gaps = 5/333 (1%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           ++ TF  ++  +    ++ +A      M K G   N+  +N L+  LCK+ +V  A E+ 
Sbjct: 134 SIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELL 193

Query: 190 DCM--KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           + M  K R   D  TY+ LL G        +A  I R+M     NPD+ T+  ++D   K
Sbjct: 194 NEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVK 253

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G +DEA  + K M  +   P +  Y+ L++   +  R+  A  TF  M   G   +V  
Sbjct: 254 QGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVT 313

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI  FCK+ + ++  ++ + M  +G+  ++ T N +++G    G+   A  +F  M+
Sbjct: 314 YNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMV 373

Query: 368 KLCEADAD--TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425
             C    D  T+ +++   C  GE+  A   +  M+       +  ++++I+GLC    V
Sbjct: 374 S-CGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKV 432

Query: 426 SDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
            ++  L   +  +G++P   T+  +   L K G
Sbjct: 433 EEAWELFCRLPVEGVKPDARTYTIMILGLCKNG 465



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 152/339 (44%), Gaps = 2/339 (0%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           ++++ + ++  F  ++   A++ K +  +Y F+ M+  G++ +L +F  L+   C+    
Sbjct: 607 LQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRF 666

Query: 183 RKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +    MK  F P   T   LL G+ +      A  +   M + G  P++V Y  +
Sbjct: 667 SLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTV 726

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           ++ LCK   ++ AL I   M+       +  Y+ L+       R  DA     +M K  I
Sbjct: 727 INGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKI 786

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             +V  + ALI  F K         + K+M  + V PN  T N ++NG   +G   +A  
Sbjct: 787 DPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKH 846

Query: 362 VFRRMI-KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +F  M+ K C  D  TY  +I  FC+   +E   K++  M  +  +    T++ LI+G C
Sbjct: 847 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYC 906

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
             G ++ +  +   M++ G+ P   T+  L   L   G+
Sbjct: 907 QAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGK 945



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 159/359 (44%), Gaps = 43/359 (11%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWD-----LVNAMRTKRMLNVETFCIIMRKYARVQKVEEA 150
           S RAY    E L     + I ++      +  ++++ + +V  F  ++   A +++ E  
Sbjct: 25  SARAYSGYREKLRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETV 84

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210
           +Y    M+ +G++ +L +F  L+   C+                                
Sbjct: 85  IYFSQQMELFGISHDLYSFTILIHCFCRCSR----------------------------- 115

Query: 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
                L  A  I  +M+  G +P IVT+G ++   C   R+ +A  +V SM  +   P  
Sbjct: 116 -----LSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNV 170

Query: 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNALIGAFCKANKFKNVYRVLK 329
            +Y+ L+        +  A++   EMEK G LA D+  YN L+   C + +++   R+L+
Sbjct: 171 VVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILR 230

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC-EADADTYTMMIKMFCQGG 388
           DM  + + P+  T   +++  + +G  DEA  ++++M++     +  TY  +I   C  G
Sbjct: 231 DMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHG 290

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            L  A K +  M  K   P++ T++ LING C    V D   L + M  +G+   G+TF
Sbjct: 291 RLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGL--VGDTF 347



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 3/241 (1%)

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G + D+ ++ I++   C+  R+  AL I+  M      P+   +  L+H + + NRI DA
Sbjct: 95  GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA 154

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILN 348
                 M K+G   +V +YN LI   CK         +L +M  KG +A +  T N +L 
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLT 214

Query: 349 GLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           GL   GE  +A R+ R M K     D  T+T +I  F + G L++A +++K M      P
Sbjct: 215 GLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGP 274

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFL 466
           +  T++ LINGLC  G +  +    + M  KG  P+  T+  L     K  R ED +K  
Sbjct: 275 NTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLF 334

Query: 467 Q 467
           Q
Sbjct: 335 Q 335



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 108/213 (50%), Gaps = 1/213 (0%)

Query: 130  NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
            N+ T+  ++  +    ++ +A + F++M   G   ++  +N L++  CKSK V    ++F
Sbjct: 824  NILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 883

Query: 190  DCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248
              M  +  + D+ TY+ L+ G+ +   L  A+++F  MVD G  PDIVTY I++D LC  
Sbjct: 884  CEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNN 943

Query: 249  GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY 308
            G++++AL +V+ +           Y++++      +++++A   F  + + G+  D   Y
Sbjct: 944  GKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAY 1003

Query: 309  NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
              +I   C+    +   ++   M   G  P+ R
Sbjct: 1004 ITMISGLCRNGLRREADKLCTRMKEDGFMPSER 1036



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 2/223 (0%)

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
           R ++AL +   M  +   P+   ++ L+       R E  +    +ME  GI  D+  + 
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369
            LI  FC+ ++      +L  M   G  P+  T   +L+G   R    +A+ +   M+K 
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS 164

Query: 370 C-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSD 427
             E +   Y  +I   C+ G++  A ++   M+ K R    + T++ L+ GLC  G    
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           +  +L DM ++ I P   TF  L    +K+G  D  + L ++M
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM 267



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 2/179 (1%)

Query: 97   VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
            V  Y+++I    K ++ +    L   M  + ++ +  T+  ++  Y +  K+  A   FN
Sbjct: 860  VVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 919

Query: 156  VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDP 214
             M   GV  ++  +N LL  LC +  + KA  +  D  K++   D  TY+I+++G  ++ 
Sbjct: 920  RMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRND 979

Query: 215  NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +FR +   G   D + Y  M+  LC+ G   EA  +   M      P+  IY
Sbjct: 980  KVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 174/381 (45%), Gaps = 38/381 (9%)

Query: 116 MWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174
           M DL+N M    +  N   F I    YA+   +++A+  FN M+++G++ +  ++  L+ 
Sbjct: 14  MHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALID 73

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--- 230
           ALCK   V  A+  F+ M +  + P+   +S L+ G        +  E+F EM++ G   
Sbjct: 74  ALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHP 133

Query: 231 ---------CN-----------------------PDIVTYGIMVDVLCKAGRVDEALGIV 258
                    CN                       PD+++Y  ++D  C AG +DEA  ++
Sbjct: 134 NIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL 193

Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
           + M S   +P SF Y+ L+H Y    RI+ A   F +M  NGI   V  YN ++    + 
Sbjct: 194 EGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQT 253

Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTY 377
            +F     +  +M + G      T N ILNGL      DEA+++F+ +  K  + +  T+
Sbjct: 254 KRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 313

Query: 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437
           T+MI    +GG  E A  ++  +     +P + T+ V+   L ++G + +   L   M +
Sbjct: 314 TIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEK 373

Query: 438 KGIRPSGETFGKLRKLLIKEG 458
            G  P+ +    L + L+  G
Sbjct: 374 NGTAPNSQMLNALVRRLLHRG 394



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 4/279 (1%)

Query: 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
            ++ + Q + D +  M  +   +V ++  ++  +     ++EA      M   G+  N  
Sbjct: 149 GRVMEGQRLVDSIECMGVRP--DVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSF 206

Query: 168 AFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226
           ++N LL   CK+  +  A  +F  M  +   P   TY+ +L G  +      A+E++  M
Sbjct: 207 SYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 266

Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
           +++G    I TY  +++ LCK+  VDEA  + +S+ S   +     +++++       R 
Sbjct: 267 INSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 326

Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
           EDA+D F  +  NG++ DV  Y  +     +    +    +   M   G APNS+  N +
Sbjct: 327 EDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 386

Query: 347 LNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMF 384
           +  L+ RG+   A     ++  +    +A T +M+I +F
Sbjct: 387 VRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIF 425



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 1/255 (0%)

Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265
           +L G+G    L    ++   MV  G +P+   + I      K G +D+A+ I   M    
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325
             P +  Y  L+       R++DA   F +M   G+  ++ ++++L+   C  +K++ V 
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMF 384
            +  +M + G+ PN    N IL  L   G   E  R+   +  +    D  +Y  +I   
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444
           C  G +++A K+ + M      P+  +++ L++G C  G +  +  L   M+  GI P  
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGV 240

Query: 445 ETFGKLRKLLIKEGR 459
            T+  +   L +  R
Sbjct: 241 VTYNTILHGLFQTKR 255


>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
 gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 200/430 (46%), Gaps = 15/430 (3%)

Query: 40  KIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA 99
           ++ L   +V    ALD+  ++   ++V   +   R+    +   FKW EK    +  +  
Sbjct: 92  RVALLPSEVEAVAALDEFDVKADLDLVYSAIWVLRDDWKSSLLAFKWGEKVGAIDEEI-- 149

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
            + MI  L   +++   W L+  +    + +++   +++ +YA   +  +A+ TF++M+K
Sbjct: 150 CNLMIWVLGNHKKFSTAWSLIRELHGSLLNSMQAMLVMIDRYAYANEASKAIKTFHMMEK 209

Query: 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW-GKDPNLPR 218
           + +T +  AF+ LL++LCK  N+ +A+E     K  F   +++++I+L GW     ++  
Sbjct: 210 FRLTPDQEAFHVLLNSLCKYGNIEEAEEFMFVNKKLFPLGTESFNIILNGWCNVTVDVFE 269

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A+ I+REM      PD  +Y  M+    K G + ++L     M      P+  +Y+ L +
Sbjct: 270 AKRIWREMSKCCILPDSTSYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLAY 329

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
               EN   +A+    ++++ G+  D   YN+LI   C+A K      VL  M    ++P
Sbjct: 330 VLTRENCFNEALKILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTEDNISP 389

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK---AFK 395
              T     +  I   ++  ++ + +RM +  +    T    + MF +  ELE+   A  
Sbjct: 390 TIET----YHSFIQAADSKMSFELLKRMRQ--DGLGPTEGTFLIMFNKSFELEEPEYALN 443

Query: 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI--RPSGETFGKLRKL 453
           VW  MK     PS   +SVLI GL   G +  +  L ++MI  G    P  +T  K   L
Sbjct: 444 VWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELYDEMILHGFIAHPKIKTLLKEPDL 503

Query: 454 -LIKEGREDV 462
             I E R+ V
Sbjct: 504 GSIDEARQQV 513



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 8/236 (3%)

Query: 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298
            +M+ VL    +   A  +++ +  ++      +  V++  Y   N    A+ TF  MEK
Sbjct: 151 NLMIWVLGNHKKFSTAWSLIRELHGSLLNSMQAML-VMIDRYAYANEASKAIKTFHMMEK 209

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ETD 357
             +  D   ++ L+ + CK    +     +  +N K     + + NIILNG      +  
Sbjct: 210 FRLTPDQEAFHVLLNSLCKYGNIEEAEEFMF-VNKKLFPLGTESFNIILNGWCNVTVDVF 268

Query: 358 EAYRVFRRMIKLC-EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416
           EA R++R M K C   D+ +YT MI  F + G L  + + +  MK + +IPS+  ++ L 
Sbjct: 269 EAKRIWREMSKCCILPDSTSYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLA 328

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR----EDVLKFLQE 468
             L  +   +++  +LE + E G+RP   T+  L   L + G+    +DVL  + E
Sbjct: 329 YVLTRENCFNEALKILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTE 384


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 194/392 (49%), Gaps = 7/392 (1%)

Query: 92  NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEA 150
            +   + A +  I+ L K  +      +V  MR K  + +V T+  ++      ++  EA
Sbjct: 255 GFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEA 314

Query: 151 VYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT-YSILLEG 209
           V  +  M K G+  ++ A   L+  LCK+  V +A E+   M    I  S + Y+ L+ G
Sbjct: 315 VGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISG 374

Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
           + +  ++ +A  I   M   GC P +VTY I+++  C  G +++A  ++  M+++   P 
Sbjct: 375 FWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPD 434

Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
            + Y+ L+      ++++ A     +  + G   D+   N LI AFCK  K K+   + K
Sbjct: 435 RYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFK 494

Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG 388
           +M+ KG+  ++ T   ++NGL   G  + A  +F +M+K   + + + Y +M+   C+ G
Sbjct: 495 EMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVG 554

Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448
           +L++A K++ +M  K  +P + T++ LI  L       ++  L +DM  KG+ P   TF 
Sbjct: 555 DLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFK 614

Query: 449 KLRKLLIKEGRE----DVLKFLQEKMNLLVKE 476
            L   L+ EGR     +V +++ E   +L +E
Sbjct: 615 YLINGLLDEGRSTLAYEVWEYMMENGIILDRE 646



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 172/389 (44%), Gaps = 4/389 (1%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
           L++  I + P +V  V+    ++ T A  F+ WAE +  ++HS  A   ++  L     +
Sbjct: 78  LERLDIELDPFVVNLVVRGLSDSET-AVRFYWWAESRPGFDHSQFAIAYIVSLLFVDGNF 136

Query: 114 QIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172
            ++ + +  +R++ + L+   + I++  Y R  K +  + TF+ M   G  +    +N  
Sbjct: 137 ALLSEFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRY 196

Query: 173 LSALCKSKNVRKAQEIFD-CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231
           +  L K+      ++ +   +         TYS  +    +   +    E+  +M   G 
Sbjct: 197 IGVLIKNCCFDLVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGF 256

Query: 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291
           +PDI    I +D LCK  R+ +AL +V+ M      P    Y+ +V       R  +AV 
Sbjct: 257 SPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVG 316

Query: 292 TFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI 351
            + EM K G+  DV    ALI   CK +K +  + +   M S  +  +    N +++G  
Sbjct: 317 LWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFW 376

Query: 352 GRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410
             G  D+AY +   M    CE    TY +++  +C  G +EKA  +   M+     P  +
Sbjct: 377 RAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRY 436

Query: 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           +++ L+ GLC    +  +   + D +E G
Sbjct: 437 SYNQLLKGLCKTHQLDKAFAFVSDHMEVG 465



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 2/224 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
           +Y+ +++ L K  Q    +  V + M      ++ +  I++  + +V+KV+ A+  F  M
Sbjct: 437 SYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEM 496

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G+  +   +  L++ L        A+E+F+ M K +  P+   Y+I+L    K  +L
Sbjct: 497 DYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDL 556

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            RA++IF  M+     PDIVTY  ++  L K  R  EAL + K M +    P S  +  L
Sbjct: 557 KRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYL 616

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           ++    E R   A + +  M +NGI+ D  +   LI      NK
Sbjct: 617 INGLLDEGRSTLAYEVWEYMMENGIILDREVSERLISVLKLKNK 660


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 41/337 (12%)

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
           N +L+++C   N++ A+ +   MK   +P+  TY+ +L  + K      A  +  +M   
Sbjct: 229 NIVLNSMCIEGNLKGAKHMIHKMKSCSLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKN 288

Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
           G   D+ TY IM+D LCK  R   A  ++K M      P    Y+ L+  +  E+++  A
Sbjct: 289 GVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLA 348

Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
           +  F EM + G+   +A Y  LI  +C+        RVL +M   GV P+  T + +LN 
Sbjct: 349 IHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLN- 407

Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGE------------------- 389
               G   EA+ V+  M K  C  D  TY  +++  C+GG                    
Sbjct: 408 ----GSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAID 463

Query: 390 ----------------LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433
                           L++A  + + M    FIP +HT+++L++G C KG +  + +LL+
Sbjct: 464 QKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQ 523

Query: 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            M+EKG+ P   T+  L K LIKEG+     +L +++
Sbjct: 524 MMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEI 560



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 191/399 (47%), Gaps = 21/399 (5%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIM 138
           A C  +  EK    E  V  Y+ MI+ L K+++    + L+  MR   +   E T+  ++
Sbjct: 278 AMCVLEDMEKN-GVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLI 336

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
           + +    K+  A++ FN M + G+  +LA +  L+   C++  + +A  +   M+   + 
Sbjct: 337 KGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVK 396

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P   TYS +L G     ++  A  ++  M   GC+PD+ TY  ++  LCK G + +A   
Sbjct: 397 PSEVTYSAMLNG-----SVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQA--- 448

Query: 258 VKSMDSTVCRPTSFIYSVL-VHTYGVENR--IEDAVDTFLEMEKNGILADVAMYNALIGA 314
            + M   V  P++     L     G+ N   +++A+D   +M     + D+  Y  L+  
Sbjct: 449 KEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSG 508

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--- 371
           FC+  K      +L+ M  KG+ P+  T   +L GLI  G+   A  +F+ +I  C+   
Sbjct: 509 FCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEII--CKEGM 566

Query: 372 -ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
            AD   Y  M+  + + G+L K       M   +  P+  ++++L++G   KG +S S  
Sbjct: 567 YADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIY 626

Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
           L +DM+ KGI+P+  T+  L   L K G  E  +KFL +
Sbjct: 627 LYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDK 665



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 170/368 (46%), Gaps = 38/368 (10%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFN-VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ-E 187
           ++ T+  +++   +  +V+ A Y F  ++ K G+  +  A+N +++   K+  + K +  
Sbjct: 533 DIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMT 592

Query: 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           I+D  +++  P+  +Y+IL+ G  K  +L R+  ++++MV  G  P  VTY +++  L K
Sbjct: 593 IYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSK 652

Query: 248 AG-----------------------------------RVDEALGIVKSMDSTVCRPTSFI 272
            G                                   R+ +AL +   M      P+S  
Sbjct: 653 HGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKT 712

Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
           YS +++    +N ++ + D   +M ++G+      Y ALI A C+       +R+ ++M 
Sbjct: 713 YSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMT 772

Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-DTYTMMIKMFCQGGELE 391
           + G+ P     + I+ GL   G+ +E   VF  +I+        T+T ++   C+  ++ 
Sbjct: 773 ALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKIS 832

Query: 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451
            A  +   M+       + T++VLI GLC    VSD+  L E+M  KG+RP+  T+  L 
Sbjct: 833 DALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLT 892

Query: 452 KLLIKEGR 459
           + +   GR
Sbjct: 893 EAIYGTGR 900



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 156/346 (45%), Gaps = 4/346 (1%)

Query: 118 DLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
           DL   M T   + ++ T+ I++  + R  K+  AV    +M + G+  ++  +  LL  L
Sbjct: 485 DLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGL 544

Query: 177 CKSKNVRKAQEIFD--CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234
            K   V+ A  +F     K+    D   Y+ ++ G+ K   L +      +M      P+
Sbjct: 545 IKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPN 604

Query: 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294
             +Y I++    K G +  ++ + K M     +PT+  Y +L+        IE AV    
Sbjct: 605 PASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLD 664

Query: 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354
           +M   GI  D   ++ LI AF + ++  +  ++   M    ++P+S+T + ++NGLI + 
Sbjct: 665 KMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKN 724

Query: 355 ETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS 413
               +  V R M++   E     Y  +I   C+ G++  AF++ + M     +P+    S
Sbjct: 725 WLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADS 784

Query: 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
            ++ GL   G V +  ++   +I  G+ P+  TF  L   L KE +
Sbjct: 785 SIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAK 830



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 122/267 (45%), Gaps = 36/267 (13%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           T+ +++   ++   +E AV   + M   G+  +  +F+ L++A  +   +  A ++F+CM
Sbjct: 642 TYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCM 701

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
           K  ++ P SKTYS ++ G  +   L  + ++ R+MV++G  P    Y  +++  C+ G +
Sbjct: 702 KWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDI 761

Query: 252 D---------EALGIVKS--MDSTVCR------------------------PTSFIYSVL 276
           +          ALGIV +   DS++ R                        PT   ++ L
Sbjct: 762 NGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTL 821

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H    E +I DA+     ME  G+  DV  YN LI   CK     +   + ++M SKG+
Sbjct: 822 MHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGL 881

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVF 363
            PN  T   +   + G G T E  ++ 
Sbjct: 882 RPNVTTYTTLTEAIYGTGRTLEGEKLL 908



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 73/406 (17%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158
           A H++  S    R  Q     + A  T R   VE+  I +    R + +    Y F  + 
Sbjct: 21  ASHALYTSRLPARSRQPAHTRIGATTTTRAHGVESSIISVLTMHRWETLNHMAYKFGKLD 80

Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
           K      L     +LS++ +   + +   I+ CM  + +  +K +S             +
Sbjct: 81  KGHGKLALK----ILSSIVQRSGLERITHIY-CMAAQILTQAKMHS-------------Q 122

Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
           A  + + +  TG +       +   +LC   R               C     ++ +LV+
Sbjct: 123 AMSLLKHLAMTGFSCS----AVFSSLLCTISR---------------CDSNPLVFDLLVN 163

Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338
            Y  E R+ DA    L M+  G  A     NA++ A  +  + K+V+  LK+   +    
Sbjct: 164 AYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVWFFLKEGLVRKFPL 223

Query: 339 NSRTCNIILNGLIGRGETDEAYRVFRRM-------------------------IKLC--- 370
           +  TCNI+LN +   G    A  +  +M                           +C   
Sbjct: 224 DVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCSLPNVITYNTILHWYVKKGRFKAAMCVLE 283

Query: 371 -------EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423
                  EAD  TY +MI   C+      A+ + K M+     P   T++ LI G  D+ 
Sbjct: 284 DMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDES 343

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            +  +  +  +M+ +G++PS  T+  L     + G  ++ L+ L E
Sbjct: 344 KMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYE 389



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 3/195 (1%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTF 154
           S + Y +MI  L +    Q   D++  M    +    T  I ++    R   +  A    
Sbjct: 709 SSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLK 768

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKD 213
             M   G+     A + ++  L K   V +   +F   ++   +P   T++ L+ G  K+
Sbjct: 769 EEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKE 828

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A  +   M   G   D+VTY +++  LCK   V +AL + + M S   RP    Y
Sbjct: 829 AKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTY 888

Query: 274 SVLVHT-YGVENRIE 287
           + L    YG    +E
Sbjct: 889 TTLTEAIYGTGRTLE 903


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 183/389 (47%), Gaps = 9/389 (2%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           K   YE       ++I  L K+         +  M  +   L+V  +  ++    +   V
Sbjct: 123 KDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMV 182

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSIL 206
            EA+  F+ M   G+  NL  +N L+  LC     ++A  +  + M+   +PD +T++++
Sbjct: 183 FEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 242

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
              + K   + RA+ IF  M   G   ++VTY  ++   C   ++ +A+ +   M    C
Sbjct: 243 AGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGC 302

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
            P    Y+ L+H +     +  A+    EM  NG+  DV  ++ LIG FCKA K      
Sbjct: 303 LPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKE 362

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           +   M+  G  P+ +TC IIL+GL       EA  +FR + K+  + D   Y++++   C
Sbjct: 363 LFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMC 422

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
             G+L  A +++ Y+  K     + T++++INGLC +G++ D+  LL  M E G  P   
Sbjct: 423 SSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDEC 482

Query: 446 TF-----GKLRKLLIKEGREDVLKFLQEK 469
           T+     G LR+  I +  +  L F++ K
Sbjct: 483 TYNVFVQGLLRRYEISKSTK-YLMFMKGK 510



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 3/322 (0%)

Query: 99  AYHSMIESLAKIRQYQIMWDLV-NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+ +I  L    +++    L+ N MR   M +V+TF +I  ++ +   +  A   F+ M
Sbjct: 203 TYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFM 262

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNL 216
              G+  N+  +N ++ A C    ++ A E+FD M +   +P+  TY+ L+ GW +  N+
Sbjct: 263 GHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNM 322

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
            +A     EMV+ G +PD+VT+  ++   CKAG+   A  +   M      P     +++
Sbjct: 323 NKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAII 382

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +      +   +A+  F E+EK     D+ +Y+ ++   C + K  +   +   ++SKGV
Sbjct: 383 LDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGV 442

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFK 395
             +  T NI++NGL   G  D+A  +  +M +  C  D  TY + ++   +  E+ K+ K
Sbjct: 443 KIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTK 502

Query: 396 VWKYMKLKRFIPSMHTFSVLIN 417
              +MK K F  +  T  +LIN
Sbjct: 503 YLMFMKGKGFRANATTTKLLIN 524



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 160/353 (45%), Gaps = 3/353 (0%)

Query: 110 IRQYQIMWDLVNAMRT-KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168
           ++   +  D  + M T K    V+ F ++    A+++    A+     M   GV  N++ 
Sbjct: 4   VKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVST 63

Query: 169 FNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
            N +++ LC+  +      +   M K    P   T++ ++ G   + N+ +A      + 
Sbjct: 64  HNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLK 123

Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287
           D G   D  T G +++ LCK G    AL  +K M+   C      YS +V     +  + 
Sbjct: 124 DMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVF 183

Query: 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347
           +A+D F +M   GI  ++  YN LI   C  +++K    +L +M  KG+ P+ +T N+I 
Sbjct: 184 EALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIA 243

Query: 348 NGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406
              +  G    A  +F  M  +  E +  TY  +I   C   +++ A +V+  M  K  +
Sbjct: 244 GRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCL 303

Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459
           P++ T++ LI+G C+   ++ +   L +M+  G+ P   T+  L     K G+
Sbjct: 304 PNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGK 356



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 136/272 (50%), Gaps = 3/272 (1%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           EH+V  Y+S+I +   + Q +   ++ + M  K  L N+ T+  ++  +   + + +A+Y
Sbjct: 268 EHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMY 327

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPDSKTYSILLEGWG 211
               M   G+  ++  ++ L+   CK+     A+E+F  M K   +PD +T +I+L+G  
Sbjct: 328 FLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLF 387

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           K      A  +FRE+     + DI+ Y I+++ +C +G++++AL +   + S   +    
Sbjct: 388 KCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVV 447

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
            Y+++++    E  ++DA D  ++ME+NG   D   YN  +    +  +     + L  M
Sbjct: 448 TYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFM 507

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
             KG   N+ T  +++N      E + A++VF
Sbjct: 508 KGKGFRANATTTKLLINYFSANKE-NRAFQVF 538


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 161/319 (50%), Gaps = 2/319 (0%)

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
           ++ +  +M  Y  V   E+ +  F  +++ G   ++ ++  L++   K   + KA E+  
Sbjct: 446 IDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSK 505

Query: 191 CMKDRFIPDS-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M+   I  + KTYS+L+ G+ K  +   A  IF ++V  G  PD+V Y  ++   C  G
Sbjct: 506 MMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMG 565

Query: 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309
            +D A+ +VK M     RPTS  +  ++H +     ++ A+D F  M ++G +  V  +N
Sbjct: 566 TMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFN 625

Query: 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IK 368
           ALI    +  + +    +L +M   GV+PN  T   I++G    G+T +A+  F ++  +
Sbjct: 626 ALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDE 685

Query: 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             + D  TY  ++K  C+ G ++ A  V K M  +    +   +++LI+G   +G V ++
Sbjct: 686 GLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEA 745

Query: 429 CVLLEDMIEKGIRPSGETF 447
             L++ M + G++P   T+
Sbjct: 746 ADLMQQMKQGGVKPDIHTY 764



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 196/406 (48%), Gaps = 4/406 (0%)

Query: 54  LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQ 112
           ++  GI    +I   +++ +   G    C   +   K+  +  SV +Y  +I   AK+ +
Sbjct: 437 MEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGK 496

Query: 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171
                ++   M +  +  N++T+ +++  + +++    A   F  + K G+  ++  +N 
Sbjct: 497 ISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNN 556

Query: 172 LLSALCKSKNVRKAQ-EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG 230
           ++ A C    + +A   + +  K+R  P S+T+  ++ G+ +   + RA ++F  M  +G
Sbjct: 557 IIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSG 616

Query: 231 CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290
           C P + T+  ++  L +  ++++A+ I+  M      P    Y+ ++H Y        A 
Sbjct: 617 CIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAF 676

Query: 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
           + F ++   G+  DV  Y AL+ A CK+ + ++   V K+M+++ +  N+   NI+++G 
Sbjct: 677 EYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGW 736

Query: 351 IGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409
             RG+  EA  + ++M +   + D  TYT  I   C+ G++ +A K+ + M+     P++
Sbjct: 737 ARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNV 796

Query: 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455
            T++ LI+G     +   +    ++M   G++P    +  L   L+
Sbjct: 797 KTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALL 842



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 146/315 (46%), Gaps = 41/315 (13%)

Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
           TF  I+  +AR  +++ A+  F++M++ G    +  FN L+  L + + + KA EI D M
Sbjct: 588 TFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 647

Query: 193 KDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251
               + P+  TY+ ++ G+    +  +A E F ++ D G   D+ TY  ++   CK+GR+
Sbjct: 648 ALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRM 707

Query: 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311
             AL + K M +      +F+Y++L+  +     + +A D   +M++ G+  D+  Y + 
Sbjct: 708 QSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSF 767

Query: 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE 371
           I A CKA       +++++M + GV PN +T                             
Sbjct: 768 INACCKAGDMLRASKMMEEMETSGVKPNVKT----------------------------- 798

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV- 430
                YT +I  + +    EKA + ++ MKL    P    +  L+  L  +  V+++ V 
Sbjct: 799 -----YTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAYVR 853

Query: 431 -----LLEDMIEKGI 440
                + ++MIE G+
Sbjct: 854 PGILSICKEMIESGL 868



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 175/387 (45%), Gaps = 11/387 (2%)

Query: 85  KWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144
           KW E++     S +A+  ++E+     Q +   D+V+A    +  +   + +++  YAR 
Sbjct: 268 KWHEERDG---SRKAFRRVLET-----QPENWQDVVSAFERIKKPSRREYGLMVSYYARR 319

Query: 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTY 203
             +  A  TF  M+  G+      +  L+ A    +++ +A      MK+  +  S  TY
Sbjct: 320 GDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTY 379

Query: 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263
           SI++ G+ K  N   A   F+E  D   + + + YG M+   C+   +D+A  +V+ M+ 
Sbjct: 380 SIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEG 439

Query: 264 TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323
                   IY  ++  Y +    E  +  F  +++ G    V  Y  LI  + K  K   
Sbjct: 440 EGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISK 499

Query: 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIK 382
              V K M S G+  N +T ++++NG +   +   A+ +F  ++K   + D   Y  +I+
Sbjct: 500 ALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIR 559

Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
            FC  G +++A  + K M+ +R  P+  TF  +I+G    G +  +  + + M   G  P
Sbjct: 560 AFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIP 619

Query: 443 SGETFGKL-RKLLIKEGREDVLKFLQE 468
           +  TF  L   L+ K   E  ++ L E
Sbjct: 620 TVHTFNALILGLVEKRQMEKAIEILDE 646



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 172/374 (45%), Gaps = 3/374 (0%)

Query: 89  KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKV 147
           + +  E +   Y S+I + A  R  +        M+ + + +++ T+ II+  +A++   
Sbjct: 333 RARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNA 392

Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSIL 206
           + A   F   +      N   +  ++ A C++ N+ +A+ +   M+   I      Y  +
Sbjct: 393 DAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTM 452

Query: 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC 266
           ++G+    N  +   +F  + + G  P +V+YG ++++  K G++ +AL + K M+S   
Sbjct: 453 MDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGI 512

Query: 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326
           +     YS+L++ +       +A   F ++ K+G+  DV +YN +I AFC          
Sbjct: 513 KHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAIC 572

Query: 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFC 385
           ++K+M  +   P SRT   I++G    GE   A  VF  M +  C     T+  +I    
Sbjct: 573 MVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLV 632

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445
           +  ++EKA ++   M L    P+ HT++ +++G    G    +      + ++G++    
Sbjct: 633 EKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVY 692

Query: 446 TFGKLRKLLIKEGR 459
           T+  L K   K GR
Sbjct: 693 TYEALLKACCKSGR 706



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 13  SGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
           SGCI  +  +N       AL       + M  + +++ + AL  +G+  +      ++  
Sbjct: 615 SGCIPTVHTFN-------ALILGLVEKRQMEKAIEILDEMAL--AGVSPNEHTYTTIMHG 665

Query: 73  FRNAGTLAFCFFKWAE-KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-N 130
           +   G     F  + + + +  +  V  Y +++++  K  + Q    +   M  + +  N
Sbjct: 666 YAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN 725

Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
              + I++  +AR   V EA      M++ GV  ++  +   ++A CK+ ++ +A ++ +
Sbjct: 726 TFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMME 785

Query: 191 CMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249
            M+   + P+ KTY+ L+ GW +     +A   F+EM   G  PD   Y  ++  L    
Sbjct: 786 EMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRA 845

Query: 250 RVDEA 254
            V EA
Sbjct: 846 TVTEA 850


>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 212/451 (47%), Gaps = 53/451 (11%)

Query: 21  RYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLA 80
           +Y+ + P   A      I+ ++LS   + +  +L ++  ++S   +  +++ + + G + 
Sbjct: 87  KYHHTTPCYTA------ITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVK 140

Query: 81  FCFFKWAEKQQNYEHS--VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML--NVETFCI 136
              F W  + +  E+   + +Y+S++  L ++   ++  +  + +  + ++  +V T+  
Sbjct: 141 AAIF-WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTT 199

Query: 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KD 194
           ++R Y ++  +E A   F+VM    V  NL A+N +++  CK  ++  A+ +FD M   +
Sbjct: 200 MIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCKKGDMESARLVFDRMMSGE 256

Query: 195 RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254
             +P+  TY+ L++G+ K   L  A++   EM++ GC P+ +TY  M+  LC  GRVDEA
Sbjct: 257 DCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA 316

Query: 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA 314
             ++  M     +     +  ++    V  + + AV     + +  +  DV  Y  +I  
Sbjct: 317 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING 376

Query: 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK------ 368
           FCK  K      +LK+M ++G+ P   + N +   L+  GE D A  + ++M +      
Sbjct: 377 FCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN 436

Query: 369 ----------LCEA---------------------DADTYTMMIKMFCQGGELEKAFKVW 397
                     LC A                     D   Y+ ++K +C+ G +E   ++ 
Sbjct: 437 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIA 496

Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428
             M  K+++  + +FSVL+  LC KG V+++
Sbjct: 497 HEMVTKKYVIGLESFSVLVKQLCAKGKVTEA 527



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 205/466 (43%), Gaps = 46/466 (9%)

Query: 45  SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ----NYEHSVRAY 100
           SPK +    LDQ  + +   IV  V+ +  N     F FF WA         Y H+   Y
Sbjct: 37  SPKNISSQPLDQFSLCLGSNIVTKVIYEQTNPYHALF-FFNWASNPNPNPNKYHHTTPCY 95

Query: 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160
            ++ + L       I   L   ++    L+      +++ Y     V+ A++ F+  ++ 
Sbjct: 96  TAITDVLLSHSLISIAASL---LKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQI 152

Query: 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIP-DSKTYSILLEGWGK------ 212
                L ++N LL  L +  +++ A+E F   +K+  +P D  TY+ ++ G+ K      
Sbjct: 153 ENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN 212

Query: 213 ----------DPNL----------------PRAREIF-REMVDTGCNPDIVTYGIMVDVL 245
                      PNL                  AR +F R M    C P+ VTY  ++D  
Sbjct: 213 AKKVFDVMTVKPNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGY 272

Query: 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305
           CK G ++EA   +  M +  CRP    Y+ +++   +  R+++A     +M  NG   +V
Sbjct: 273 CKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV 332

Query: 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRR 365
           + + +++   C   KF      L+++    + P+ ++  +++NG    G++DEA  + + 
Sbjct: 333 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE 392

Query: 366 M-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKG 423
           M  +  +    ++  + ++  + GEL++A  + K M     +P+  +++ +I GLC  KG
Sbjct: 393 MRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG 452

Query: 424 IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-EDVLKFLQE 468
            + D   L++ MI  G       +  L K   +EG  E+V++   E
Sbjct: 453 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE 498



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 139/318 (43%), Gaps = 39/318 (12%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNV 156
           AY++MI    K    +    + + M +    + N  T+  ++  Y +  ++EEA    N 
Sbjct: 228 AYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNE 287

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK-DRFIPDSKTYSILLEGWGKDPN 215
           M   G   N   +N ++  LC +  V +A+ +   M+ + F  +  T+  +L+G      
Sbjct: 288 MMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 347

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF---- 271
             +A    R +++   NPD+ +Y ++++  CK G+ DEA+ ++K M +   +PT F    
Sbjct: 348 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA 407

Query: 272 IYSVLVH------------------------TYGV--------ENRIEDAVDTFLEMEKN 299
           ++ +LV                         +Y          + R++D  D    M ++
Sbjct: 408 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 467

Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
           G   D  MY+ L+  +C+    +NV ++  +M +K       + ++++  L  +G+  EA
Sbjct: 468 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEA 527

Query: 360 YRVFRRMIKLCEADADTY 377
            ++F    +    D D+Y
Sbjct: 528 EKLFDTCSRCPAVDVDSY 545



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 18/272 (6%)

Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
           +++    W  +PN P   +       T C      Y  + DVL     +  A  ++K+ +
Sbjct: 70  HALFFFNWASNPN-PNPNKYHHT---TPC------YTAITDVLLSHSLISIAASLLKNSN 119

Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
               + + F  S L+  YG    ++ A+  F + ++    A +  YN+L+G   + N  K
Sbjct: 120 ----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK 175

Query: 323 NVYRVLKDMNSKGV-APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381
                   +  + V  P+  T   ++ G    G  + A +VF  M    + +   Y  MI
Sbjct: 176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT--VKPNLLAYNTMI 233

Query: 382 KMFCQGGELEKAFKVW-KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
             FC+ G++E A  V+ + M  +  +P+  T++ LI+G C KG + ++   + +M+ +G 
Sbjct: 234 NGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGC 293

Query: 441 RPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472
           RP+  T+  +   L   GR D  K L  KM L
Sbjct: 294 RPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 325


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 159/311 (51%), Gaps = 2/311 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + I++  Y R   + EA+   + M + G   ++ A+N +L+ LCK K +  A  +FD M 
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMV 422

Query: 194 DR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R  +PD  T++ L+ G  K+ N+ +A  +F  M      PDIVTY I++D  CK   ++
Sbjct: 423 ERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEME 482

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M S    P    Y++LV+ Y     + +A   + EM + GI   +   N +I
Sbjct: 483 KANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVI 542

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCE 371
             +C++         L  M S+GV P+S T N ++NG +     D+A+ +  +M  K  +
Sbjct: 543 KGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQ 602

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY +++  FC+ G +++A  + + M  +   P   T++ LING   +  + ++   
Sbjct: 603 PDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRF 662

Query: 432 LEDMIEKGIRP 442
            ++M+++G  P
Sbjct: 663 HDEMLQRGFVP 673



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 186/415 (44%), Gaps = 38/415 (9%)

Query: 94  EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVY 152
           E +V   + M+ +L K  +   +   +  M  K +  ++ T+  ++  Y R   + EA  
Sbjct: 182 ELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFE 241

Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWG 211
             N M   G+   L  +N +++ LCK     +A+ +F+ M      PD+ TY+ LL    
Sbjct: 242 VMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESC 301

Query: 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271
           ++ N   A++IF +M+  G +PD++++  ++ V  + G +D+AL   + M ++   P + 
Sbjct: 302 RNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNV 361

Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
           IY++L++ Y     + +A++   +M + G   DV  YN ++   CK     +   +  +M
Sbjct: 362 IYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM 421

Query: 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADADTYTMMIKMFCQGGEL 390
             +GV P+  T   +++G    G   +A  +F  M  K  + D  TY ++I  FC+  E+
Sbjct: 422 VERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEM 481

Query: 391 EKA-----------------------------------FKVWKYMKLKRFIPSMHTFSVL 415
           EKA                                   F++W  M  K   P++ T + +
Sbjct: 482 EKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTV 541

Query: 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
           I G C  G +S +   L  MI +G+ P   T+  L    +K    D   FL  KM
Sbjct: 542 IKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 38/390 (9%)

Query: 99  AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157
            Y+++I  L K  +Y     + N M +  +  +  T+  ++ +  R     EA   F+ M
Sbjct: 257 TYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDM 316

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNL 216
              GV+ +L +F+ L+    ++ ++ +A   F  MK    +PD+  Y+IL+ G+ ++  +
Sbjct: 317 LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMM 376

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
             A EI  +M++ GC  D+V Y  +++ LCK   + +A  +   M      P    ++ L
Sbjct: 377 SEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
           +H +  E  +  A+  F  M +  I  D+  YN LI  FCK  + +    +  +M S+ +
Sbjct: 437 IHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKI 496

Query: 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIK----------------LCEA-------- 372
            PN  +  I++NG    G   EA+R++  MI+                 C +        
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADE 556

Query: 373 ------------DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
                       D+ TY  +I  F +G  ++KAF +   M+ K   P + T++V++NG C
Sbjct: 557 FLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFC 616

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            +G + ++ ++L  MIE+GI P   T+  L
Sbjct: 617 RQGRMQEAELILRKMIERGIDPDRSTYTTL 646



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 10/331 (3%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           F +++R Y + +K+ E   TF ++++ G   ++ A N LL  L K   V  A E+++ + 
Sbjct: 118 FDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIA 177

Query: 194 DRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
              I  +  T +I++    KD  +   +    +M   G   DIVTY  +++  C+ G + 
Sbjct: 178 RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLG 237

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           EA  ++ SM     +PT F Y+ +++    + R   A   F EM   G+  D   YN L+
Sbjct: 238 EAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL 297

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRM-I 367
              C+ N F     +  DM  +GV+P+     I  + LIG     G  D+A   FR M  
Sbjct: 298 VESCRNNNFLEAKDIFSDMLHRGVSPDL----ISFSSLIGVSSRNGHLDQALMYFRDMKT 353

Query: 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427
                D   YT++I  +C+ G + +A ++   M  +     +  ++ ++NGLC K +++D
Sbjct: 354 SGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLAD 413

Query: 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458
           +  L ++M+E+G+ P   TF  L     KEG
Sbjct: 414 ANALFDEMVERGVVPDFCTFTTLIHGHCKEG 444



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 2/281 (0%)

Query: 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188
           L+V  +  I+    + + + +A   F+ M + GV  +   F  L+   CK  N+ KA  +
Sbjct: 393 LDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSL 452

Query: 189 FDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
           F  M  + I PD  TY+IL++G+ K   + +A E++ EM+     P+ ++Y I+V+  C 
Sbjct: 453 FGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCN 512

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G V EA  +   M     +PT    + ++  Y     +  A +   +M   G+  D   
Sbjct: 513 LGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSIT 572

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           YN LI  F K       + ++  M +KG+ P+  T N+ILNG   +G   EA  + R+MI
Sbjct: 573 YNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMI 632

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
            +  + D  TYT +I  +     L++AF+    M  + F+P
Sbjct: 633 ERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVP 673



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 3/351 (0%)

Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC-IIMRKYARVQKVEEAVYTFNVMQKYG 161
           +I S  + R+     D    +R K  L     C  ++    ++  V+ A   +N + + G
Sbjct: 121 LIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSG 180

Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAR 220
           +  N+   N +++ALCK   +   +     M+ + I  D  TY+ L+  + ++  L  A 
Sbjct: 181 IELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAF 240

Query: 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY 280
           E+   M   G  P + TY  +++ LCK GR   A G+   M S    P +  Y+ L+   
Sbjct: 241 EVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVES 300

Query: 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
              N   +A D F +M   G+  D+  +++LIG   +           +DM + G+ P++
Sbjct: 301 CRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDN 360

Query: 341 RTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY 399
               I++NG    G   EA  +  +M++  C  D   Y  ++   C+   L  A  ++  
Sbjct: 361 VIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDE 420

Query: 400 MKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
           M  +  +P   TF+ LI+G C +G +  +  L   M +K I+P   T+  L
Sbjct: 421 MVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 151/354 (42%), Gaps = 74/354 (20%)

Query: 123 MRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           +R+KR+ + +T  + M + + V +VE      ++    GV  NL  F+ L+ +  +++ +
Sbjct: 74  VRSKRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGV-DNLV-FDLLIRSYVQARKL 131

Query: 183 RKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
            +  + F  ++ + F+      + LL G  K   +  A E++ E+  +G   ++ T  IM
Sbjct: 132 NEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIM 191

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+ LCK                                   +++I+D     ++ME+ GI
Sbjct: 192 VNALCK-----------------------------------DHKIDDVKPFLIDMEQKGI 216

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
            AD+  YN LI A+C+       + V+  M+ KG+ P   T N ++NGL  +G    A  
Sbjct: 217 FADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKG 276

Query: 362 VFRRMIKL-CEADADTYTMMIKMFC----------------------------------- 385
           VF  M+ +    D  TY  ++   C                                   
Sbjct: 277 VFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSS 336

Query: 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439
           + G L++A   ++ MK    +P    +++LING C  G++S++  + + M+E+G
Sbjct: 337 RNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQG 390



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 7/211 (3%)

Query: 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN 319
           SM ST C   + ++ +L+ +Y    ++ +  DTF  + + G L  +   N+L+G   K  
Sbjct: 106 SMSST-CGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMG 164

Query: 320 KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYT 378
                + V  ++   G+  N  T NI++N L    + D+       M  K   AD  TY 
Sbjct: 165 WVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYN 224

Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
            +I  +C+ G L +AF+V   M  K   P++ T++ +INGLC KG    +  +  +M+  
Sbjct: 225 TLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSI 284

Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469
           G+ P   T+     LL++  R +   FL+ K
Sbjct: 285 GLSPDTTTY---NTLLVESCRNN--NFLEAK 310



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 128/287 (44%), Gaps = 37/287 (12%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVE 148
           +Q     V AY++++  L K +       L + M  + ++ +  TF  ++  + +   + 
Sbjct: 388 EQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMG 447

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
           +A+  F +M +  +  ++  +N L+   CK+  + KA E+++ M  R I P+  +Y+IL+
Sbjct: 448 KALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILV 507

Query: 208 EGW-------------------GKDP----------------NLPRAREIFREMVDTGCN 232
            G+                   G  P                +L +A E   +M+  G  
Sbjct: 508 NGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVG 567

Query: 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292
           PD +TY  +++   K   +D+A  ++  M++   +P    Y+V+++ +  + R+++A   
Sbjct: 568 PDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELI 627

Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339
             +M + GI  D + Y  LI  +   +  K  +R   +M  +G  P+
Sbjct: 628 LRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 164/312 (52%), Gaps = 2/312 (0%)

Query: 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193
           + +++  + R   + +A+   + M   G   ++  +N LL+ LCK + +  A+ + + M+
Sbjct: 19  YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMR 78

Query: 194 DRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
           +R +P D  T++ L+ G+  +  L +A ++F  M++    PDIVTY  ++D +C+ G +D
Sbjct: 79  ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLD 138

Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
           +A  +   M S    P    YS+L+ ++  + ++EDA     EM   GIL ++  YN++I
Sbjct: 139 KANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 198

Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCE 371
             +C++       + L+ M    V+P+  T N +++G I   +  +A+++   M K   +
Sbjct: 199 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 258

Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431
            D  TY M+I  F   G +++A  +++ M  K   P  +T+  +ING    G   ++  L
Sbjct: 259 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 318

Query: 432 LEDMIEKGIRPS 443
            ++M+++G  P 
Sbjct: 319 HDEMLQRGFAPD 330



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 138/283 (48%), Gaps = 1/283 (0%)

Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
            +PD   Y++++ G+ +   +  A  +  EMV  GC PD+VTY  +++ LCK  R+ +A 
Sbjct: 12  LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAE 71

Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
           G++  M      P    ++ L+H Y +E +++ A+  F  M    +  D+  YN LI   
Sbjct: 72  GLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGM 131

Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI-KLCEADA 374
           C+         +  DM+S+ + PN  T +I+++    +G+ ++A+     MI K    + 
Sbjct: 132 CRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNI 191

Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
            TY  +IK +C+ G + K  K  + M + +  P + T++ LI+G   +  + D+  LL  
Sbjct: 192 MTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 251

Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477
           M ++ ++P   T+  L       G      ++ EKM     EP
Sbjct: 252 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 294



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 141/284 (49%), Gaps = 2/284 (0%)

Query: 96  SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTF 154
            V  Y++++  L K R+      L+N MR + +  ++ TF  ++  Y    K+++A+  F
Sbjct: 50  DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 109

Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKD 213
           + M    +  ++  +N L+  +C+  ++ KA +++D M  R I P+  TYSIL++   + 
Sbjct: 110 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 169

Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
             +  A     EM++ G  P+I+TY  ++   C++G V +    ++ M      P    Y
Sbjct: 170 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 229

Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
           + L+H Y  E+++ DA      MEK  +  DV  YN LI  F      +    + + M +
Sbjct: 230 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCA 289

Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY 377
           KG+ P+  T   ++NG +  G + EA+++   M++   A  D +
Sbjct: 290 KGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 333



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 2/293 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPN 215
           M+ +G+  +   +  ++   C++  +  A  + D M     +PD  TY+ LL G  K+  
Sbjct: 7   MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 66

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A  +  EM + G  PD+ T+  ++   C  G++D+AL +  +M +   RP    Y+ 
Sbjct: 67  LLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 126

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L+     +  ++ A D + +M    I  +   Y+ LI + C+  + ++ +  L +M +KG
Sbjct: 127 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 186

Query: 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAF 394
           + PN  T N I+ G    G   +  +  ++M +     D  TY  +I  + +  ++  AF
Sbjct: 187 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 246

Query: 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
           K+   M+ ++  P + T+++LING    G V ++  + E M  KGI P   T+
Sbjct: 247 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 299



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 6/256 (2%)

Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282
            REM   G  PD V Y +++   C+AG + +AL +   M    C P    Y+ L++    
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
           E R+ DA     EM + G+  D+  +  LI  +C   K     ++   M ++ + P+  T
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 343 CNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
            N +++G+  +G+ D+A  ++  M  +    +  TY+++I   C+ G++E AF     M 
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR-E 460
            K  +P++ T++ +I G C  G VS     L+ M+   + P   T+  L    IKE +  
Sbjct: 184 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 243

Query: 461 DVLKFLQEKMNLLVKE 476
           D  K L    N++ KE
Sbjct: 244 DAFKLL----NMMEKE 255


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 191/413 (46%), Gaps = 38/413 (9%)

Query: 61  VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
           ++P I  +V+++F +   L   FF+++    +  H+   Y  ++ +L K+        + 
Sbjct: 74  LNPSIAFEVIKRFSDP-LLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVF 132

Query: 121 NAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
           + MR+  +L +     +++  YAR+ K++ A    N +  YG+  +   +N LL+ L K 
Sbjct: 133 DCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQ 192

Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
             V +A                   +LL               FRE ++    PD+ ++ 
Sbjct: 193 NLVDEA-------------------VLL---------------FREHLEPYFVPDVYSFN 218

Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE-MEK 298
           I++  LC+ G +D+A    ++M +  C P    Y+ L++ +   N I    D   E M  
Sbjct: 219 ILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLI 278

Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE 358
            G+  DV  Y ++I  +CK    K    +  +M S G+ PN  T N++++G    G    
Sbjct: 279 KGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRS 338

Query: 359 AYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
           A  ++ +M+ L C  D  T+T +I  +C+ GE+ +  K+W+ MK++   P+++T++VLIN
Sbjct: 339 AMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLIN 398

Query: 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
            LC +  + ++   L  +    + P    +  +     K G+ D   F+  +M
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEM 451



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 150/312 (48%), Gaps = 3/312 (0%)

Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189
           +V +F I++R   R+ ++++A   F  M  +G   ++ ++N L++  C+   + K  ++ 
Sbjct: 213 DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLL 272

Query: 190 --DCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
             D +     PD  TY+ ++ G+ K  ++  A E+F EMV +G  P+  T+ +++D   K
Sbjct: 273 KEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGK 332

Query: 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307
            G +  A+ + + M    C P    ++ L+  Y  E  +   +  + EM+   +  +V  
Sbjct: 333 VGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYT 392

Query: 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367
           Y  LI A CK N+ +     L+ + S  V P     N +++G    G+ DEA  +   M 
Sbjct: 393 YAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQ 452

Query: 368 -KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426
            K C  D  T+T++I   C  G + +A   +  M     +P   T + LI+ L   G+ +
Sbjct: 453 EKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPN 512

Query: 427 DSCVLLEDMIEK 438
           ++  + +  ++K
Sbjct: 513 EASQIKQAALQK 524



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 167/344 (48%), Gaps = 5/344 (1%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNY-EHSVRAYHSMIESLAKIRQYQIM 116
           GI+VSP +  ++L        +      + E  + Y    V +++ +I  L +I +    
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 117 WDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFNV-MQKYGVTQNLAAFNGLLS 174
           ++    M       ++ ++  ++  + RV ++ +        M   GV+ ++  +  ++S
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 175 ALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
             CK  +++ A E+FD M    I P+  T+++L++G+GK  N+  A  ++ +M+  GC P
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLP 353

Query: 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTF 293
           D+VT+  ++D  C+ G V++ L + + M      P  + Y+VL++    ENRI +A +  
Sbjct: 354 DVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFL 413

Query: 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353
             ++ + ++    +YN +I  FCKA K      ++ +M  K   P+  T  I++ G   +
Sbjct: 414 RHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMK 473

Query: 354 GETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKV 396
           G   EA   F +MI++ C  D  T   +I    + G   +A ++
Sbjct: 474 GRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 110/239 (46%), Gaps = 2/239 (0%)

Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
           TY +++  LCK G  D A  +   M S    P S I  +LV +Y    +++ A +   E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356
              GI     +YN L+    K N       + ++       P+  + NI++ GL   GE 
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 357 DEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKY-MKLKRFIPSMHTFSV 414
           D+A+  F+ M    C  D  +Y  +I  FC+  E+ K   + K  M +K   P + T++ 
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473
           +I+G C  G +  +  L ++M+  GI+P+  TF  L     K G       + EKM LL
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 158/329 (48%), Gaps = 37/329 (11%)

Query: 125 TKRMLN--VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
           TKR L   V +F  ++  Y +V  ++E     + M+K     ++  ++ L++ALCK   +
Sbjct: 267 TKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326

Query: 183 RKAQEIFDCMKDR-FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
             A  +FD M  R  IP+   ++ L+ G  ++  +   +E +++M+  G  PDIV Y  +
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           V+  CK G +  A  IV  M     RP    Y+ L+  +     +E A++   EM++NGI
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
             D   ++AL+   CK  +  +  R L++M   G+ P                       
Sbjct: 447 ELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP----------------------- 483

Query: 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
                      D  TYTMM+  FC+ G+ +  FK+ K M+    +PS+ T++VL+NGLC 
Sbjct: 484 -----------DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCK 532

Query: 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
            G + ++ +LL+ M+  G+ P   T+  L
Sbjct: 533 LGQMKNADMLLDAMLNIGVVPDDITYNTL 561



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 181/409 (44%), Gaps = 21/409 (5%)

Query: 81  FCFFKWAEKQQNYEHSVRAYHSMIESLA---KIRQYQIMWDLVNAMRTKRM--------- 128
           F FFK+   Q  +  +V  Y  +   LA      + Q + +LV + + K           
Sbjct: 102 FAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLV 161

Query: 129 -LNVETFC-----IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182
            + V   C      +M  Y  +  + +A+  F + +K+     +     LL  + K    
Sbjct: 162 EMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPT 221

Query: 183 RKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
                 +  + D   P +   ++IL+  + K+ N+  A+++F E+      P +V++  +
Sbjct: 222 GTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTL 281

Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
           ++  CK G +DE   +   M+ +  RP  F YS L++    EN+++ A   F EM K G+
Sbjct: 282 INGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGL 341

Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361
           + +  ++  LI    +  +   +    + M SKG+ P+    N ++NG    G+   A  
Sbjct: 342 IPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARN 401

Query: 362 VFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
           +   MI+     D  TYT +I  FC+GG++E A ++ K M           FS L+ G+C
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461

Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDV-LKFLQE 468
            +G V D+   L +M+  GI+P   T+  +     K+G      K L+E
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKE 510



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 3/296 (1%)

Query: 90  QQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVE 148
           +++ + +V +++++I    K+      + L + M   R   +V T+  ++    +  K++
Sbjct: 268 KRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMD 327

Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILL 207
            A   F+ M K G+  N   F  L+    ++  +   +E +  M  + + PD   Y+ L+
Sbjct: 328 GAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLV 387

Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
            G+ K+ +L  AR I   M+  G  PD +TY  ++D  C+ G V+ AL I K MD     
Sbjct: 388 NGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIE 447

Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
                +S LV     E R+ DA     EM + GI  D   Y  ++ AFCK    +  +++
Sbjct: 448 LDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKL 507

Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIK 382
           LK+M S G  P+  T N++LNGL   G+   A  +   M+ +     D TY  +++
Sbjct: 508 LKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 124/255 (48%), Gaps = 2/255 (0%)

Query: 97  VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML-NVETFCIIMRKYARVQKVEEAVYTFN 155
           V  Y ++I +L K  +      L + M  + ++ N   F  ++  ++R  +++    ++ 
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQ 369

Query: 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDP 214
            M   G+  ++  +N L++  CK+ ++  A+ I D M  R + PD  TY+ L++G+ +  
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429

Query: 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS 274
           ++  A EI +EM   G   D V +  +V  +CK GRV +A   ++ M     +P    Y+
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489

Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
           +++  +  +   +       EM+ +G +  V  YN L+   CK  + KN   +L  M + 
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549

Query: 335 GVAPNSRTCNIILNG 349
           GV P+  T N +L G
Sbjct: 550 GVVPDDITYNTLLEG 564



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE--TFCIIMRKYARVQKVEEAVYTFNVM 157
           Y++++    K        ++V+ M  +R L  +  T+  ++  + R   VE A+     M
Sbjct: 383 YNTLVNGFCKNGDLVAARNIVDGM-IRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441

Query: 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-DCMKDRFIPDSKTYSILLEGWGKDPNL 216
            + G+  +   F+ L+  +CK   V  A+    + ++    PD  TY+++++ + K  + 
Sbjct: 442 DQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDA 501

Query: 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276
               ++ +EM   G  P +VTY ++++ LCK G++  A  ++ +M +    P    Y+ L
Sbjct: 502 QTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTL 561

Query: 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320
           +  +   +R  ++   +++  + GI+AD+A Y +++    +A+K
Sbjct: 562 LEGH---HRHANSSKRYIQKPEIGIVADLASYKSIVNELDRASK 602


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 190/394 (48%), Gaps = 4/394 (1%)

Query: 80  AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIM 138
           A+  F+  +K     + V  Y ++I+SLAK  + + +  L+  M ++ + +++ T+  +M
Sbjct: 293 AYALFREMDKVGAAPNHV-TYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALM 351

Query: 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI- 197
               +  K +E   T        ++ N   +  L+ ALCK+ NV +A+++   M+++ I 
Sbjct: 352 DWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSIS 411

Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257
           P+  T+S ++ G+ K   L +A E  R M + G NP++VTYG ++D   K    D AL +
Sbjct: 412 PNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEV 471

Query: 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
              M     +   FI   LV+      +IE+A+  F +   +G+  D   Y  LI    K
Sbjct: 472 YHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFK 531

Query: 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADT 376
           A      ++  +++  + + P++   N+ +N L   G+  EA      M  +  + D  T
Sbjct: 532 AGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQST 591

Query: 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436
           Y  MI   C+ GE  KA K+   MK+    P++ T++ L+ GL   G V  +  LL +M+
Sbjct: 592 YNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMV 651

Query: 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470
             G  PS  T  ++ +   +  R DV+  + E M
Sbjct: 652 SAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWM 685



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 210/476 (44%), Gaps = 21/476 (4%)

Query: 6   HSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEI 65
           H R +++   I+ LR   SS P+T A +   +       +P V+ +    + G+      
Sbjct: 83  HCRLRLLRPAIALLR---SSRPTTVAYNILLAALSDHAHAPAVLAEMC--KRGVPFDGVT 137

Query: 66  VEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125
           V  +L      G +             +   V  ++++I    ++        + + M  
Sbjct: 138 VNTLLAGLCRNGQVDAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTA 197

Query: 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184
           + + ++V  +  ++  + R  +V+ A    ++M++ GV  N+A +   +   C++K V +
Sbjct: 198 QGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEE 257

Query: 185 AQEIFDCM-KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVD 243
           A ++++ M ++  + D  T S L+ G  +D     A  +FREM   G  P+ VTY  ++D
Sbjct: 258 AFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLID 317

Query: 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA 303
            L KAGR  E L ++  M S         Y+ L+   G + + ++  DT      + +  
Sbjct: 318 SLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSP 377

Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363
           +   Y  LI A CKA+      +VL +M  K ++PN  T + ++NG + RG  D+A   +
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE-Y 436

Query: 364 RRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYM-----KLKRFIPSMHTFSVLI 416
           +RM+K      +  TY  +I  F +    + A +V+  M     K+ +FI        L+
Sbjct: 437 KRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI-----VDSLV 491

Query: 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMN 471
           NGL   G + ++  L +D    G+      +  L   L K G      KF QE M+
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 176/400 (44%), Gaps = 16/400 (4%)

Query: 58  GIRVSPEIVEDVLEKFRNAGTL--AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQI 115
           G++V+  IV+ ++   R  G +  A   FK A         V  Y ++I+ L K      
Sbjct: 479 GVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVN-YTTLIDGLFKAGDMPT 537

Query: 116 MWDLVNAMRTKRML------NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
            +     +  + ML      NV   C+ M     + K +EA      M+  G+  + + +
Sbjct: 538 AFKFGQELMDRNMLPDAVVYNVFINCLCM-----LGKFKEAKSFLTEMRNMGLKPDQSTY 592

Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVD 228
           N ++ + C+     KA ++   MK   I P+  TY+ L+ G      + +A+ +  EMV 
Sbjct: 593 NTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVS 652

Query: 229 TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288
            G +P  +T+  ++    ++ R+D  L I + M +        +Y+ L+           
Sbjct: 653 AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRK 712

Query: 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348
           A     EM  +GI  D   +NALI   CK++   N +     M  + ++PN  T N +L 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 349 GLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407
           GL   G   EA  V   M K   E +  TY ++     +     +A +++  M  K F+P
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
            + T++ LI+     G+++ +  L +DM ++G+ P+  T+
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTY 872



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 1/194 (0%)

Query: 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPN 215
           M   G+  ++  +N LL  LC     RKA  + + M    I PD+ T++ L+ G  K  +
Sbjct: 685 MMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSH 744

Query: 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275
           L  A   + +M+    +P+I T+  ++  L   GR+ EA  ++  M+ +   P +  Y +
Sbjct: 745 LDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDI 804

Query: 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335
           L   +G ++   +A+  + EM   G +  V+ YNALI  F KA        + KDM  +G
Sbjct: 805 LATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRG 864

Query: 336 VAPNSRTCNIILNG 349
           V P S T +I+++G
Sbjct: 865 VHPTSCTYDILVSG 878


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,904,101,415
Number of Sequences: 23463169
Number of extensions: 277984950
Number of successful extensions: 902597
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6020
Number of HSP's successfully gapped in prelim test: 6075
Number of HSP's that attempted gapping in prelim test: 731581
Number of HSP's gapped (non-prelim): 62279
length of query: 480
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 334
effective length of database: 8,933,572,693
effective search space: 2983813279462
effective search space used: 2983813279462
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)