BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011652
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 60 RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL 107
R+ E DV+E+ R +G ++ +KQ+ +E+S + Y S+++S
Sbjct: 75 RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSF 122
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA---------VDT 292
+D+ K G V EAL + + + + Y+VL++ + ++ D
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 293 FLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352
F +M + ++ + A + + + + ++K M + G+ P R+ L G
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 353 RGETDEAYRVFRRM 366
+G+ D+AY V M
Sbjct: 153 KGDADKAYEVDAHM 166
>pdb|4B4Y|A Chain A, Crystal Structure Of The Neuroglobin From The
Photosymbiotic Marine Acoel Symsagittifera Roscoffensis
Length = 154
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 64 EIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEH--SVRAYHSMIESLAK-----------I 110
+ VEDVL++F F F WA+ + + S + S +S+ K +
Sbjct: 30 DFVEDVLQQFMEENPETFQIFPWADASKTAKEMRSHPRFKSHAKSIGKVISDCLVDLNGV 89
Query: 111 RQYQIMWDLVNAMRTKRMLNVETF-----CIIMRKYARV 144
++++ + AM TK+ + E F CI+ + RV
Sbjct: 90 KKHEPKLSSLGAMHTKKKVPTELFGKLGGCILTQVVKRV 128
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
CN+ N L +G EA + ++LC AD+ + + + G +E+A ++++
Sbjct: 275 CNLA-NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 290 VDTFLEMEKNGILADVAMYN 309
+DTF EM +N I ADVA YN
Sbjct: 118 MDTFQEMNENPIYADVADYN 137
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 290 VDTFLEMEKNGILADVAMYN 309
+DTF EM +N I ADVA YN
Sbjct: 118 MDTFQEMNENPIYADVADYN 137
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 290 VDTFLEMEKNGILADVAMYN 309
+DTF EM +N I ADVA YN
Sbjct: 118 MDTFQEMNENPIYADVADYN 137
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 290 VDTFLEMEKNGILADVAMYN 309
+DTF EM +N I ADVA YN
Sbjct: 110 MDTFQEMNENPIYADVADYN 129
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 290 VDTFLEMEKNGILADVAMYN 309
+DTF EM +N I ADVA YN
Sbjct: 110 MDTFQEMNENPIYADVADYN 129
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 51 DTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110
D L + GI V P+I+ NAG + +F+W + Q++ + + +E + K
Sbjct: 324 DEILSRRGILVVPDILA-------NAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMK- 375
Query: 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT 153
+ + + M+ K NV+ MR A + ++ Y
Sbjct: 376 KAFN------DVMKVKEKYNVD-----MRTAAYILAIDRVAYA 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,259,380
Number of Sequences: 62578
Number of extensions: 543764
Number of successful extensions: 1462
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 25
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)