Query 011652
Match_columns 480
No_of_seqs 671 out of 3181
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 03:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.9E-61 4E-66 481.8 55.4 415 60-477 367-787 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.1E-61 1.1E-65 478.6 57.9 426 47-477 389-845 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.6E-57 5.6E-62 449.8 44.7 412 47-475 142-559 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 9.2E-57 2E-61 456.3 45.9 407 48-471 207-652 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3.8E-56 8.1E-61 441.5 44.5 411 51-476 110-526 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.8E-55 3.9E-60 446.9 45.5 419 47-477 171-623 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.3E-27 1.6E-31 243.0 51.9 400 62-471 464-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-26 8.7E-31 237.5 53.1 397 69-475 437-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 4E-22 8.7E-27 186.3 34.2 301 106-445 44-354 (389)
10 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.9E-26 175.1 34.5 371 95-476 114-488 (966)
11 PRK11788 tetratricopeptide rep 99.9 8.3E-22 1.8E-26 184.2 34.4 293 176-474 45-348 (389)
12 PRK15174 Vi polysaccharide exp 99.9 2E-20 4.4E-25 183.1 43.6 318 79-403 60-381 (656)
13 PRK11447 cellulose synthase su 99.9 9.1E-20 2E-24 190.8 49.5 382 79-472 287-739 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.1E-19 1.1E-23 174.0 51.7 389 79-475 145-573 (615)
15 PRK15174 Vi polysaccharide exp 99.9 4.1E-20 9E-25 181.0 41.9 335 98-439 43-382 (656)
16 PRK10049 pgaA outer membrane p 99.9 1.4E-19 3E-24 181.1 45.3 408 58-476 10-459 (765)
17 KOG4626 O-linked N-acetylgluco 99.9 2.8E-20 6.1E-25 166.7 34.9 386 63-461 116-507 (966)
18 PRK11447 cellulose synthase su 99.9 7.4E-19 1.6E-23 184.0 49.9 367 103-475 275-702 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.9 4.5E-17 9.7E-22 160.3 47.6 369 99-476 129-540 (615)
20 PRK10049 pgaA outer membrane p 99.9 1.4E-17 3E-22 166.8 43.9 376 94-477 12-426 (765)
21 PRK14574 hmsH outer membrane p 99.8 7.4E-16 1.6E-20 151.7 48.7 401 68-476 73-516 (822)
22 PRK14574 hmsH outer membrane p 99.8 1E-15 2.2E-20 150.8 46.8 392 78-477 51-483 (822)
23 KOG4422 Uncharacterized conser 99.8 2.7E-15 5.8E-20 129.4 40.9 399 38-440 122-592 (625)
24 KOG2002 TPR-containing nuclear 99.8 8.6E-16 1.9E-20 145.3 37.7 393 79-476 254-748 (1018)
25 PRK09782 bacteriophage N4 rece 99.8 6.8E-14 1.5E-18 140.9 51.1 189 282-476 521-709 (987)
26 PRK09782 bacteriophage N4 rece 99.8 3.3E-14 7.2E-19 143.1 46.1 356 109-475 354-742 (987)
27 KOG2003 TPR repeat-containing 99.8 1.1E-15 2.4E-20 132.8 28.4 391 61-458 199-708 (840)
28 KOG0495 HAT repeat protein [RN 99.8 4.4E-13 9.5E-18 121.9 41.9 412 52-476 468-883 (913)
29 KOG4422 Uncharacterized conser 99.7 6.8E-13 1.5E-17 114.8 40.8 339 128-472 204-589 (625)
30 KOG2076 RNA polymerase III tra 99.7 1.4E-13 3.1E-18 129.7 37.8 373 79-464 157-546 (895)
31 PRK10747 putative protoheme IX 99.7 6.9E-14 1.5E-18 129.5 34.5 128 339-472 262-389 (398)
32 TIGR00540 hemY_coli hemY prote 99.7 6.7E-14 1.5E-18 130.4 32.9 131 339-470 262-396 (409)
33 PRK10747 putative protoheme IX 99.7 2.1E-13 4.5E-18 126.4 35.9 283 144-437 97-389 (398)
34 KOG2076 RNA polymerase III tra 99.7 9.9E-13 2.1E-17 124.1 39.5 409 62-473 172-655 (895)
35 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.2E-18 128.1 33.1 290 143-437 96-398 (409)
36 PF13429 TPR_15: Tetratricopep 99.7 1.5E-16 3.3E-21 140.8 12.2 262 205-472 13-276 (280)
37 KOG1915 Cell cycle control pro 99.7 5.2E-12 1.1E-16 110.8 39.2 388 79-475 91-538 (677)
38 PF13429 TPR_15: Tetratricopep 99.7 2.6E-16 5.6E-21 139.3 12.5 225 205-435 49-274 (280)
39 KOG0495 HAT repeat protein [RN 99.7 8.1E-12 1.7E-16 113.9 39.3 389 79-476 424-849 (913)
40 COG3071 HemY Uncharacterized e 99.7 1.9E-12 4.1E-17 111.4 32.8 290 144-442 97-394 (400)
41 KOG2003 TPR repeat-containing 99.7 5.4E-13 1.2E-17 116.3 29.5 160 270-434 558-718 (840)
42 KOG2002 TPR-containing nuclear 99.7 1.1E-11 2.4E-16 118.0 40.5 317 79-401 148-479 (1018)
43 KOG1126 DNA-binding cell divis 99.7 7.1E-14 1.5E-18 127.6 24.1 286 182-476 335-623 (638)
44 KOG1155 Anaphase-promoting com 99.6 1.3E-11 2.8E-16 108.2 36.2 357 95-466 162-529 (559)
45 KOG1126 DNA-binding cell divis 99.6 2.6E-13 5.7E-18 124.0 25.9 286 146-444 334-626 (638)
46 COG2956 Predicted N-acetylgluc 99.6 5.7E-12 1.2E-16 105.3 30.3 220 110-333 48-277 (389)
47 COG2956 Predicted N-acetylgluc 99.6 1.8E-12 3.9E-17 108.2 27.1 290 143-438 47-347 (389)
48 COG3071 HemY Uncharacterized e 99.6 6.2E-11 1.4E-15 102.3 36.4 292 109-407 96-394 (400)
49 KOG1915 Cell cycle control pro 99.6 1.3E-10 2.8E-15 102.3 38.6 384 79-473 159-585 (677)
50 KOG1155 Anaphase-promoting com 99.6 2E-11 4.4E-16 107.0 33.0 330 129-473 162-495 (559)
51 KOG0547 Translocase of outer m 99.6 5.9E-11 1.3E-15 104.8 34.2 386 79-474 133-567 (606)
52 PRK12370 invasion protein regu 99.5 8.3E-11 1.8E-15 114.0 30.4 249 182-438 277-535 (553)
53 PRK12370 invasion protein regu 99.5 6.5E-11 1.4E-15 114.7 29.6 268 126-403 251-535 (553)
54 PF12569 NARP1: NMDA receptor- 99.5 3.3E-10 7.2E-15 106.1 32.9 293 102-402 9-333 (517)
55 TIGR02521 type_IV_pilW type IV 99.5 1E-10 2.2E-15 101.1 26.9 199 271-473 32-232 (234)
56 TIGR02521 type_IV_pilW type IV 99.5 4.7E-11 1E-15 103.1 24.8 196 97-295 31-228 (234)
57 KOG1173 Anaphase-promoting com 99.5 1.2E-09 2.7E-14 98.4 33.5 287 163-456 241-534 (611)
58 PF12569 NARP1: NMDA receptor- 99.4 8.9E-10 1.9E-14 103.3 32.1 291 137-435 10-331 (517)
59 KOG4318 Bicoid mRNA stability 99.4 1.8E-11 3.9E-16 115.3 20.7 89 153-253 12-101 (1088)
60 KOG1156 N-terminal acetyltrans 99.4 1.2E-08 2.6E-13 93.7 37.0 381 79-474 59-469 (700)
61 KOG1840 Kinesin light chain [C 99.4 2.6E-10 5.5E-15 105.6 26.7 240 235-474 199-480 (508)
62 KOG0547 Translocase of outer m 99.4 4.6E-09 9.9E-14 93.1 32.6 357 102-476 120-535 (606)
63 KOG1129 TPR repeat-containing 99.4 3.6E-11 7.8E-16 100.7 18.6 228 204-437 227-457 (478)
64 KOG4162 Predicted calmodulin-b 99.4 5.1E-08 1.1E-12 91.4 39.4 131 343-475 653-785 (799)
65 KOG1173 Anaphase-promoting com 99.4 1.2E-09 2.6E-14 98.5 27.8 285 130-420 243-533 (611)
66 KOG1129 TPR repeat-containing 99.4 1.2E-10 2.5E-15 97.8 19.9 231 239-475 227-460 (478)
67 KOG2047 mRNA splicing factor [ 99.4 5.9E-08 1.3E-12 89.2 38.7 29 132-160 249-277 (835)
68 KOG3785 Uncharacterized conser 99.4 1.2E-08 2.5E-13 87.0 29.9 380 79-477 40-494 (557)
69 KOG2047 mRNA splicing factor [ 99.3 4.4E-07 9.6E-12 83.6 40.6 384 81-471 122-613 (835)
70 KOG1174 Anaphase-promoting com 99.3 2.4E-08 5.2E-13 86.8 30.7 282 80-368 215-499 (564)
71 KOG4318 Bicoid mRNA stability 99.3 9.4E-10 2E-14 104.1 24.0 338 89-457 17-392 (1088)
72 KOG1174 Anaphase-promoting com 99.3 4.1E-07 8.9E-12 79.4 38.3 301 133-439 196-501 (564)
73 KOG1156 N-terminal acetyltrans 99.3 1.2E-07 2.6E-12 87.3 34.8 400 61-472 72-510 (700)
74 COG3063 PilF Tfp pilus assembl 99.3 8.8E-09 1.9E-13 82.6 24.2 194 276-473 41-236 (250)
75 COG3063 PilF Tfp pilus assembl 99.3 8.2E-09 1.8E-13 82.8 23.8 197 99-298 37-235 (250)
76 cd05804 StaR_like StaR_like; a 99.3 8.3E-08 1.8E-12 88.6 34.8 199 97-297 6-213 (355)
77 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-11 3.4E-16 76.3 6.7 49 372-420 1-49 (50)
78 KOG1840 Kinesin light chain [C 99.3 7.8E-09 1.7E-13 95.9 26.7 238 199-436 198-477 (508)
79 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 76.1 6.6 50 407-456 1-50 (50)
80 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.5E-13 89.9 26.5 226 214-448 40-274 (296)
81 KOG4340 Uncharacterized conser 99.2 1E-08 2.2E-13 85.2 22.8 328 99-436 12-373 (459)
82 KOG4340 Uncharacterized conser 99.2 4.4E-08 9.6E-13 81.5 25.7 398 57-473 4-443 (459)
83 PRK11189 lipoprotein NlpI; Pro 99.2 1.9E-08 4E-13 89.4 25.7 93 134-227 67-159 (296)
84 cd05804 StaR_like StaR_like; a 99.2 2.5E-07 5.3E-12 85.5 34.1 305 130-437 5-335 (355)
85 KOG2376 Signal recognition par 99.2 1.4E-06 3.1E-11 79.6 36.1 107 79-194 30-138 (652)
86 KOG0548 Molecular co-chaperone 99.2 2.2E-07 4.8E-12 83.8 29.2 366 79-456 20-471 (539)
87 KOG3785 Uncharacterized conser 99.1 3E-07 6.4E-12 78.6 27.4 350 104-470 29-454 (557)
88 PF04733 Coatomer_E: Coatomer 99.1 9.2E-09 2E-13 90.0 17.8 80 356-436 183-263 (290)
89 PF04733 Coatomer_E: Coatomer 99.1 1.5E-08 3.2E-13 88.7 18.9 252 138-403 8-265 (290)
90 PRK04841 transcriptional regul 99.1 1.6E-06 3.6E-11 90.6 36.6 336 140-475 383-762 (903)
91 KOG0548 Molecular co-chaperone 99.1 2E-06 4.4E-11 77.8 31.2 321 95-421 68-471 (539)
92 KOG1914 mRNA cleavage and poly 99.0 1.8E-05 3.9E-10 71.9 35.3 408 60-472 17-500 (656)
93 KOG4162 Predicted calmodulin-b 99.0 6.3E-07 1.4E-11 84.4 25.6 311 114-438 461-783 (799)
94 KOG0624 dsRNA-activated protei 99.0 8E-06 1.7E-10 69.9 29.3 304 129-439 36-371 (504)
95 PRK04841 transcriptional regul 99.0 7.8E-06 1.7E-10 85.6 36.3 333 107-439 384-761 (903)
96 KOG1128 Uncharacterized conser 99.0 2.3E-07 4.9E-12 86.8 21.7 218 239-476 402-619 (777)
97 PLN02789 farnesyltranstransfer 98.9 1.7E-06 3.7E-11 76.9 25.5 211 103-317 43-267 (320)
98 KOG1125 TPR repeat-containing 98.9 3.1E-07 6.6E-12 83.7 20.6 252 208-466 293-564 (579)
99 KOG0985 Vesicle coat protein c 98.9 2.5E-05 5.5E-10 76.1 34.1 203 200-436 1104-1306(1666)
100 KOG1125 TPR repeat-containing 98.9 3.8E-07 8.2E-12 83.1 20.1 252 175-430 294-563 (579)
101 KOG1070 rRNA processing protei 98.9 1.7E-06 3.7E-11 86.6 26.0 232 235-470 1458-1697(1710)
102 KOG1127 TPR repeat-containing 98.9 6.8E-06 1.5E-10 79.8 29.1 146 79-227 510-657 (1238)
103 KOG0624 dsRNA-activated protei 98.9 3.2E-05 6.9E-10 66.3 33.8 303 96-404 37-371 (504)
104 KOG1070 rRNA processing protei 98.9 3.3E-06 7.1E-11 84.7 27.2 247 186-435 1444-1697(1710)
105 KOG1128 Uncharacterized conser 98.9 3.6E-07 7.9E-12 85.5 19.3 218 200-437 398-615 (777)
106 PLN02789 farnesyltranstransfer 98.8 6.3E-06 1.4E-10 73.3 26.0 204 179-386 50-267 (320)
107 KOG3617 WD40 and TPR repeat-co 98.8 5.5E-06 1.2E-10 78.8 25.5 240 96-367 725-994 (1416)
108 KOG3616 Selective LIM binding 98.8 4.1E-06 8.8E-11 78.7 24.4 319 97-467 589-931 (1636)
109 KOG3617 WD40 and TPR repeat-co 98.8 3.6E-05 7.7E-10 73.5 30.3 211 96-332 756-994 (1416)
110 KOG3081 Vesicle coat complex C 98.8 7.2E-06 1.6E-10 67.7 22.7 236 139-389 16-256 (299)
111 KOG2376 Signal recognition par 98.8 0.00012 2.5E-09 67.6 39.1 353 106-471 88-518 (652)
112 KOG0985 Vesicle coat protein c 98.8 7.9E-05 1.7E-09 72.8 32.2 267 165-473 1103-1370(1666)
113 TIGR03302 OM_YfiO outer membra 98.8 1.3E-06 2.9E-11 75.3 18.6 187 94-299 30-232 (235)
114 PRK14720 transcript cleavage f 98.8 5.9E-06 1.3E-10 82.0 24.7 238 129-420 29-268 (906)
115 COG5010 TadD Flp pilus assembl 98.8 5.5E-06 1.2E-10 68.4 20.5 159 101-261 70-228 (257)
116 PRK10370 formate-dependent nit 98.7 5.6E-06 1.2E-10 68.5 20.9 153 277-444 23-178 (198)
117 COG5010 TadD Flp pilus assembl 98.7 5.6E-06 1.2E-10 68.3 19.8 159 274-435 70-228 (257)
118 KOG3616 Selective LIM binding 98.7 4.5E-05 9.7E-10 72.0 27.6 167 173-363 739-905 (1636)
119 PRK14720 transcript cleavage f 98.7 8.7E-06 1.9E-10 80.8 24.5 240 95-385 29-268 (906)
120 KOG1127 TPR repeat-containing 98.7 5.1E-05 1.1E-09 74.0 28.7 180 79-263 476-658 (1238)
121 TIGR03302 OM_YfiO outer membra 98.7 2.8E-06 6.1E-11 73.2 18.9 185 129-334 31-232 (235)
122 KOG2053 Mitochondrial inherita 98.7 0.00044 9.5E-09 67.1 40.5 213 49-265 31-256 (932)
123 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.7E-13 54.8 4.1 32 404-435 2-33 (34)
124 PRK15179 Vi polysaccharide bio 98.7 1.3E-05 2.8E-10 78.7 24.4 146 301-450 82-228 (694)
125 KOG3081 Vesicle coat complex C 98.7 1.9E-05 4.1E-10 65.3 20.7 248 175-437 17-270 (299)
126 PF12854 PPR_1: PPR repeat 98.7 4.5E-08 9.8E-13 54.4 4.0 32 230-261 2-33 (34)
127 PRK15359 type III secretion sy 98.6 3E-06 6.5E-11 66.2 15.7 106 100-206 27-132 (144)
128 KOG1914 mRNA cleavage and poly 98.6 0.00037 7.9E-09 63.8 34.1 374 95-473 18-464 (656)
129 PRK10370 formate-dependent nit 98.6 2.1E-06 4.5E-11 71.0 15.2 119 110-229 52-173 (198)
130 COG4783 Putative Zn-dependent 98.6 7.5E-05 1.6E-09 67.4 24.8 149 278-448 314-463 (484)
131 PRK15359 type III secretion sy 98.6 7E-06 1.5E-10 64.2 16.7 95 343-438 27-121 (144)
132 PRK15179 Vi polysaccharide bio 98.6 9.3E-06 2E-10 79.7 20.8 146 93-240 82-227 (694)
133 TIGR02552 LcrH_SycD type III s 98.5 6.2E-06 1.4E-10 64.1 13.9 94 134-228 20-113 (135)
134 COG4783 Putative Zn-dependent 98.5 7.9E-05 1.7E-09 67.2 22.0 181 250-436 252-435 (484)
135 KOG3060 Uncharacterized conser 98.5 0.00019 4.2E-09 59.1 21.9 128 100-228 55-182 (289)
136 TIGR02552 LcrH_SycD type III s 98.4 1.5E-05 3.3E-10 61.9 14.5 111 83-196 5-115 (135)
137 KOG3060 Uncharacterized conser 98.4 0.00025 5.5E-09 58.4 21.1 162 135-299 56-220 (289)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.7E-05 1.2E-09 68.7 17.6 124 274-402 173-296 (395)
139 PF09976 TPR_21: Tetratricopep 98.3 0.00014 3.1E-09 57.1 16.3 115 353-469 24-143 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.3E-05 1.2E-09 68.9 15.5 124 238-368 172-296 (395)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00011 2.5E-09 57.6 15.2 125 99-225 14-143 (145)
142 KOG2053 Mitochondrial inherita 98.1 0.011 2.3E-07 58.0 43.0 168 60-230 73-256 (932)
143 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 46.9 4.0 33 202-234 2-34 (35)
144 TIGR00756 PPR pentatricopeptid 98.1 7.1E-06 1.5E-10 46.3 4.5 33 411-443 2-34 (35)
145 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00018 3.9E-09 54.3 12.9 102 99-200 4-110 (119)
146 PF10037 MRP-S27: Mitochondria 98.0 8.7E-05 1.9E-09 67.8 12.6 118 339-456 65-185 (429)
147 PF05843 Suf: Suppressor of fo 98.0 0.0001 2.2E-09 64.9 12.7 130 98-228 2-135 (280)
148 PF13812 PPR_3: Pentatricopept 98.0 9.1E-06 2E-10 45.5 3.9 33 201-233 2-34 (34)
149 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.7E-10 44.9 4.4 32 411-442 3-34 (34)
150 cd00189 TPR Tetratricopeptide 98.0 0.00014 3E-09 52.2 11.3 93 100-193 3-95 (100)
151 PF10037 MRP-S27: Mitochondria 98.0 0.00017 3.7E-09 66.0 13.6 122 161-282 61-185 (429)
152 PF14938 SNAP: Soluble NSF att 98.0 0.00059 1.3E-08 60.3 16.8 125 349-473 123-266 (282)
153 PF05843 Suf: Suppressor of fo 98.0 0.00021 4.6E-09 62.9 13.0 142 306-451 2-147 (280)
154 cd00189 TPR Tetratricopeptide 97.9 0.00022 4.7E-09 51.1 11.3 91 380-472 6-96 (100)
155 PLN03088 SGT1, suppressor of 97.9 0.00044 9.5E-09 63.2 15.3 88 349-437 11-98 (356)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00059 1.3E-08 51.4 13.8 96 343-438 5-105 (119)
157 PF08579 RPM2: Mitochondrial r 97.9 0.00034 7.5E-09 49.9 10.8 79 378-456 29-116 (120)
158 PRK15363 pathogenicity island 97.9 0.00095 2.1E-08 51.6 14.1 94 344-438 39-132 (157)
159 KOG0553 TPR repeat-containing 97.9 0.00025 5.3E-09 60.1 11.3 98 314-414 90-187 (304)
160 KOG0550 Molecular chaperone (D 97.9 0.018 3.9E-07 51.4 22.9 277 105-404 57-351 (486)
161 PF08579 RPM2: Mitochondrial r 97.8 0.00038 8.2E-09 49.7 10.0 76 277-352 32-116 (120)
162 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.022 4.8E-07 51.4 32.6 131 341-475 398-533 (660)
163 PRK10866 outer membrane biogen 97.8 0.0085 1.8E-07 51.4 20.1 53 177-229 43-98 (243)
164 PLN03088 SGT1, suppressor of 97.8 0.00066 1.4E-08 62.1 14.1 96 105-201 10-105 (356)
165 PRK15363 pathogenicity island 97.8 0.0012 2.6E-08 51.0 12.9 97 97-194 35-131 (157)
166 KOG2041 WD40 repeat protein [G 97.8 0.04 8.6E-07 52.6 28.4 123 95-226 690-822 (1189)
167 PF12895 Apc3: Anaphase-promot 97.8 5.7E-05 1.2E-09 52.8 5.2 20 415-434 31-50 (84)
168 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.4E-10 41.6 3.4 29 202-230 2-30 (31)
169 PRK02603 photosystem I assembl 97.7 0.0026 5.5E-08 51.7 15.2 83 133-215 37-121 (172)
170 PF14938 SNAP: Soluble NSF att 97.7 0.011 2.4E-07 52.4 20.2 61 274-334 159-225 (282)
171 PRK10153 DNA-binding transcrip 97.7 0.0035 7.7E-08 60.0 17.7 142 300-447 332-489 (517)
172 PF12895 Apc3: Anaphase-promot 97.7 9.2E-05 2E-09 51.8 5.4 80 353-434 2-83 (84)
173 PRK10153 DNA-binding transcrip 97.7 0.0041 8.8E-08 59.6 18.0 140 335-476 332-485 (517)
174 PRK02603 photosystem I assembl 97.7 0.0033 7.1E-08 51.0 15.3 89 306-394 36-126 (172)
175 CHL00033 ycf3 photosystem I as 97.7 0.001 2.3E-08 53.7 12.2 79 133-211 37-117 (168)
176 PF01535 PPR: PPR repeat; Int 97.7 6.8E-05 1.5E-09 40.8 3.6 29 411-439 2-30 (31)
177 PRK10866 outer membrane biogen 97.7 0.03 6.6E-07 48.1 23.0 65 96-160 31-98 (243)
178 PF04840 Vps16_C: Vps16, C-ter 97.7 0.039 8.6E-07 49.3 26.2 79 312-399 184-262 (319)
179 KOG1258 mRNA processing protei 97.7 0.056 1.2E-06 50.9 29.5 352 95-464 43-420 (577)
180 PF12688 TPR_5: Tetratrico pep 97.6 0.0024 5.2E-08 47.5 12.4 89 139-227 9-102 (120)
181 COG4235 Cytochrome c biogenesi 97.6 0.0037 8E-08 53.5 14.8 115 114-229 139-256 (287)
182 CHL00033 ycf3 photosystem I as 97.6 0.0016 3.4E-08 52.7 12.4 79 307-385 37-117 (168)
183 COG4235 Cytochrome c biogenesi 97.6 0.0042 9.1E-08 53.2 15.0 100 339-439 155-257 (287)
184 PF07079 DUF1347: Protein of u 97.6 0.05 1.1E-06 49.3 35.8 386 79-471 24-522 (549)
185 PF14559 TPR_19: Tetratricopep 97.6 0.00035 7.5E-09 46.5 6.9 52 352-403 3-54 (68)
186 KOG0550 Molecular chaperone (D 97.6 0.013 2.8E-07 52.2 17.6 294 134-456 52-369 (486)
187 PF14559 TPR_19: Tetratricopep 97.6 0.00036 7.7E-09 46.5 6.6 53 108-160 2-54 (68)
188 COG4700 Uncharacterized protei 97.6 0.01 2.2E-07 46.8 15.0 128 95-223 87-216 (251)
189 PF13414 TPR_11: TPR repeat; P 97.5 0.00069 1.5E-08 45.2 7.7 65 409-474 3-68 (69)
190 KOG0553 TPR repeat-containing 97.5 0.0022 4.8E-08 54.6 11.7 89 106-195 90-178 (304)
191 PF13432 TPR_16: Tetratricopep 97.5 0.00068 1.5E-08 44.6 7.1 58 103-160 3-60 (65)
192 KOG2041 WD40 repeat protein [G 97.5 0.1 2.2E-06 50.0 26.0 60 375-434 1022-1082(1189)
193 PF12688 TPR_5: Tetratrico pep 97.5 0.01 2.2E-07 44.2 14.0 13 284-296 15-27 (120)
194 PF06239 ECSIT: Evolutionarily 97.4 0.0037 8.1E-08 50.8 11.7 88 372-459 45-153 (228)
195 KOG1130 Predicted G-alpha GTPa 97.4 0.0022 4.8E-08 56.9 11.2 131 343-473 198-344 (639)
196 PF13432 TPR_16: Tetratricopep 97.4 0.00089 1.9E-08 44.0 6.6 56 381-437 4-59 (65)
197 PF13414 TPR_11: TPR repeat; P 97.3 0.0012 2.5E-08 44.1 6.8 64 96-159 2-66 (69)
198 KOG1538 Uncharacterized conser 97.3 0.15 3.2E-06 48.6 21.9 41 149-192 618-658 (1081)
199 PF13525 YfiO: Outer membrane 97.3 0.038 8.2E-07 46.2 17.0 61 100-160 8-71 (203)
200 PF06239 ECSIT: Evolutionarily 97.3 0.0062 1.3E-07 49.6 11.5 104 198-320 45-153 (228)
201 PRK15331 chaperone protein Sic 97.3 0.028 6.2E-07 43.8 14.4 87 350-437 47-133 (165)
202 KOG2796 Uncharacterized conser 97.2 0.096 2.1E-06 44.0 18.5 131 273-403 180-315 (366)
203 COG4700 Uncharacterized protei 97.2 0.069 1.5E-06 42.3 18.5 131 302-434 86-218 (251)
204 KOG1130 Predicted G-alpha GTPa 97.2 0.0035 7.5E-08 55.7 10.1 282 139-436 25-342 (639)
205 KOG2796 Uncharacterized conser 97.2 0.099 2.1E-06 43.9 21.0 131 307-438 179-315 (366)
206 PF04840 Vps16_C: Vps16, C-ter 97.2 0.14 3.1E-06 45.8 24.2 111 340-469 177-287 (319)
207 PF03704 BTAD: Bacterial trans 97.2 0.021 4.5E-07 44.9 13.9 72 376-448 64-140 (146)
208 PF13525 YfiO: Outer membrane 97.2 0.048 1E-06 45.5 16.4 22 381-402 148-169 (203)
209 PF03704 BTAD: Bacterial trans 97.1 0.006 1.3E-07 47.9 10.2 71 99-169 64-139 (146)
210 PRK10803 tol-pal system protei 97.1 0.013 2.9E-07 50.7 12.7 95 100-194 146-245 (263)
211 KOG1538 Uncharacterized conser 97.1 0.31 6.7E-06 46.5 21.7 40 219-261 619-658 (1081)
212 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.24 5.2E-06 45.1 25.8 376 79-468 27-490 (660)
213 PRK15331 chaperone protein Sic 97.0 0.066 1.4E-06 41.9 14.2 90 313-403 45-134 (165)
214 PRK10803 tol-pal system protei 97.0 0.024 5.3E-07 49.1 13.1 87 351-437 154-245 (263)
215 PF13371 TPR_9: Tetratricopept 97.0 0.007 1.5E-07 40.8 7.8 54 383-437 4-57 (73)
216 PF13371 TPR_9: Tetratricopept 96.9 0.0096 2.1E-07 40.1 7.9 57 105-161 3-59 (73)
217 COG3898 Uncharacterized membra 96.8 0.35 7.6E-06 43.3 33.3 119 312-438 270-392 (531)
218 PF13281 DUF4071: Domain of un 96.7 0.42 9.2E-06 43.4 19.6 167 271-438 142-334 (374)
219 COG3898 Uncharacterized membra 96.7 0.43 9.3E-06 42.7 29.4 287 178-477 96-396 (531)
220 PF08631 SPO22: Meiosis protei 96.7 0.42 9.2E-06 42.2 24.1 163 306-470 85-272 (278)
221 PF10300 DUF3808: Protein of u 96.6 0.17 3.6E-06 48.4 17.0 121 353-474 246-377 (468)
222 PF13281 DUF4071: Domain of un 96.6 0.51 1.1E-05 42.9 20.7 166 237-404 143-335 (374)
223 PF13424 TPR_12: Tetratricopep 96.6 0.0078 1.7E-07 41.2 6.1 64 410-473 6-75 (78)
224 KOG2280 Vacuolar assembly/sort 96.6 0.76 1.7E-05 44.8 33.0 114 337-468 681-794 (829)
225 PF12921 ATP13: Mitochondrial 96.6 0.048 1E-06 41.1 10.4 47 371-417 49-96 (126)
226 PF08631 SPO22: Meiosis protei 96.6 0.47 1E-05 41.9 25.5 122 108-229 4-150 (278)
227 PF10300 DUF3808: Protein of u 96.5 0.13 2.9E-06 49.0 15.6 178 149-333 175-375 (468)
228 KOG1920 IkappaB kinase complex 96.5 1.2 2.6E-05 46.0 23.9 24 378-401 1003-1026(1265)
229 COG4105 ComL DNA uptake lipopr 96.5 0.42 9E-06 40.4 19.8 181 99-298 36-232 (254)
230 KOG1585 Protein required for f 96.5 0.36 7.8E-06 40.3 15.4 203 238-467 34-250 (308)
231 PF13424 TPR_12: Tetratricopep 96.5 0.009 1.9E-07 40.9 5.7 63 375-437 6-74 (78)
232 PF12921 ATP13: Mitochondrial 96.5 0.088 1.9E-06 39.7 11.3 55 404-458 47-102 (126)
233 PF09205 DUF1955: Domain of un 96.5 0.23 4.9E-06 37.0 13.5 61 344-404 90-150 (161)
234 PF13512 TPR_18: Tetratricopep 96.4 0.12 2.6E-06 39.5 11.3 82 97-178 10-94 (142)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.059 1.3E-06 49.5 11.1 65 339-403 74-141 (453)
236 PF07079 DUF1347: Protein of u 96.3 0.85 1.8E-05 41.8 33.7 120 321-449 396-530 (549)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.14 3E-06 47.1 13.5 66 95-160 73-141 (453)
238 KOG2280 Vacuolar assembly/sort 96.3 1.2 2.6E-05 43.5 28.7 340 56-434 425-795 (829)
239 PF04053 Coatomer_WDAD: Coatom 96.3 0.21 4.6E-06 47.0 15.1 108 131-264 295-402 (443)
240 smart00299 CLH Clathrin heavy 96.2 0.4 8.7E-06 37.2 14.2 32 111-142 21-52 (140)
241 KOG2114 Vacuolar assembly/sort 96.2 1.2 2.6E-05 44.2 19.3 139 107-261 378-516 (933)
242 KOG1920 IkappaB kinase complex 96.1 2.1 4.5E-05 44.4 22.9 25 169-193 793-819 (1265)
243 KOG0543 FKBP-type peptidyl-pro 96.0 0.18 3.9E-06 45.3 12.5 94 376-472 259-354 (397)
244 COG3118 Thioredoxin domain-con 96.0 0.93 2E-05 39.2 17.0 122 106-228 143-264 (304)
245 PF04053 Coatomer_WDAD: Coatom 95.9 0.24 5.1E-06 46.6 13.6 156 244-434 270-427 (443)
246 KOG3941 Intermediate in Toll s 95.9 0.28 6.1E-06 41.8 12.3 86 389-474 87-189 (406)
247 KOG1585 Protein required for f 95.9 0.87 1.9E-05 38.1 17.2 208 96-328 30-250 (308)
248 KOG4555 TPR repeat-containing 95.9 0.26 5.6E-06 36.6 10.5 90 349-439 52-145 (175)
249 KOG0543 FKBP-type peptidyl-pro 95.8 0.11 2.4E-06 46.6 10.3 138 104-263 215-354 (397)
250 COG1729 Uncharacterized protei 95.8 0.2 4.4E-06 42.6 11.3 97 99-196 144-245 (262)
251 PRK11906 transcriptional regul 95.8 0.9 2E-05 42.1 16.1 115 114-229 275-401 (458)
252 PF13428 TPR_14: Tetratricopep 95.8 0.036 7.7E-07 32.8 5.0 36 100-135 4-39 (44)
253 KOG2610 Uncharacterized conser 95.7 0.85 1.8E-05 40.1 14.6 153 141-295 113-272 (491)
254 KOG2114 Vacuolar assembly/sort 95.5 1.7 3.6E-05 43.2 17.4 140 244-400 377-516 (933)
255 COG1729 Uncharacterized protei 95.5 0.32 7E-06 41.5 11.3 95 343-438 145-244 (262)
256 PRK11906 transcriptional regul 95.4 0.97 2.1E-05 41.9 15.0 80 357-437 321-400 (458)
257 COG4105 ComL DNA uptake lipopr 95.4 1.4 3.1E-05 37.4 19.0 18 244-261 80-97 (254)
258 PF09205 DUF1955: Domain of un 95.3 0.85 1.8E-05 34.1 12.2 136 282-441 14-152 (161)
259 KOG1258 mRNA processing protei 95.3 2.9 6.3E-05 40.0 32.7 186 269-458 296-489 (577)
260 COG3629 DnrI DNA-binding trans 95.2 0.32 6.8E-06 42.2 10.7 77 99-175 155-236 (280)
261 COG3118 Thioredoxin domain-con 95.2 1.9 4E-05 37.4 16.6 167 47-218 119-290 (304)
262 PF13428 TPR_14: Tetratricopep 95.1 0.1 2.2E-06 30.8 5.4 27 377-403 4-30 (44)
263 smart00299 CLH Clathrin heavy 95.1 1.2 2.6E-05 34.5 16.3 83 276-366 13-95 (140)
264 PF02259 FAT: FAT domain; Int 95.1 2.8 6E-05 38.6 18.0 64 409-472 146-212 (352)
265 PF13512 TPR_18: Tetratricopep 94.9 1.1 2.3E-05 34.4 11.4 71 350-420 20-93 (142)
266 KOG2610 Uncharacterized conser 94.9 1.2 2.6E-05 39.1 13.0 156 106-261 112-273 (491)
267 PF13170 DUF4003: Protein of u 94.8 2.7 5.9E-05 37.3 18.6 128 147-276 78-223 (297)
268 COG0457 NrfG FOG: TPR repeat [ 94.8 2.2 4.8E-05 36.0 28.2 87 350-437 177-264 (291)
269 KOG3941 Intermediate in Toll s 94.7 0.74 1.6E-05 39.4 11.1 126 186-331 54-185 (406)
270 PF13170 DUF4003: Protein of u 94.7 3 6.4E-05 37.1 20.4 127 287-415 79-223 (297)
271 PF04184 ST7: ST7 protein; In 94.6 4 8.7E-05 38.3 17.9 62 341-402 260-323 (539)
272 PF09613 HrpB1_HrpK: Bacterial 94.6 1.8 3.8E-05 34.0 13.1 52 352-403 22-73 (160)
273 KOG4555 TPR repeat-containing 94.5 1.3 2.9E-05 33.0 10.7 93 382-475 51-146 (175)
274 COG0457 NrfG FOG: TPR repeat [ 94.5 2.6 5.7E-05 35.6 29.9 225 249-475 37-267 (291)
275 COG3629 DnrI DNA-binding trans 94.4 0.72 1.6E-05 40.0 10.8 60 342-401 155-214 (280)
276 KOG1941 Acetylcholine receptor 94.3 3.6 7.9E-05 36.8 14.6 51 348-398 130-186 (518)
277 PF13176 TPR_7: Tetratricopept 94.2 0.097 2.1E-06 29.3 3.6 27 447-473 2-28 (36)
278 KOG1941 Acetylcholine receptor 94.1 3.3 7.1E-05 37.0 14.1 200 97-297 43-273 (518)
279 KOG4570 Uncharacterized conser 93.5 2.2 4.7E-05 37.3 11.7 98 336-437 60-163 (418)
280 PF10602 RPN7: 26S proteasome 93.5 3.4 7.5E-05 33.5 13.3 95 98-194 37-141 (177)
281 KOG1550 Extracellular protein 93.3 8.1 0.00018 38.1 17.2 182 251-439 228-427 (552)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 0.5 1.1E-05 33.0 6.2 59 149-207 25-83 (103)
283 PF10602 RPN7: 26S proteasome 93.2 1.8 4E-05 35.1 10.7 61 342-402 38-101 (177)
284 TIGR02561 HrpB1_HrpK type III 93.1 3.2 6.9E-05 32.0 11.6 18 351-368 55-72 (153)
285 PF02284 COX5A: Cytochrome c o 93.1 0.47 1E-05 33.5 6.0 60 149-208 28-87 (108)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 93.0 0.89 1.9E-05 31.8 7.2 60 322-381 24-83 (103)
287 PF13431 TPR_17: Tetratricopep 93.0 0.16 3.4E-06 27.9 3.0 29 365-393 4-32 (34)
288 PF00637 Clathrin: Region in C 92.8 0.0053 1.2E-07 48.0 -4.4 83 276-365 13-95 (143)
289 PF13176 TPR_7: Tetratricopept 92.7 0.32 6.9E-06 27.1 4.1 26 411-436 1-26 (36)
290 PF13431 TPR_17: Tetratricopep 92.7 0.17 3.7E-06 27.8 2.9 20 130-149 12-31 (34)
291 PF10345 Cohesin_load: Cohesin 92.7 12 0.00026 37.5 28.9 88 385-472 372-481 (608)
292 COG3947 Response regulator con 92.6 6.4 0.00014 34.2 14.2 58 203-261 282-339 (361)
293 KOG2396 HAT (Half-A-TPR) repea 92.6 9.3 0.0002 35.9 33.7 100 370-472 455-558 (568)
294 PF13929 mRNA_stabil: mRNA sta 92.5 4.1 8.9E-05 35.4 12.1 113 79-191 146-263 (292)
295 PF04184 ST7: ST7 protein; In 92.4 9.7 0.00021 35.9 16.3 59 310-368 264-323 (539)
296 COG4649 Uncharacterized protei 92.2 5 0.00011 31.9 13.8 139 304-443 58-201 (221)
297 PF02284 COX5A: Cytochrome c o 92.1 2.9 6.3E-05 29.7 8.8 59 323-381 28-86 (108)
298 PF07719 TPR_2: Tetratricopept 92.0 0.62 1.3E-05 25.3 4.7 29 447-475 4-32 (34)
299 KOG0276 Vesicle coat complex C 91.9 2 4.2E-05 41.1 10.2 132 133-296 616-747 (794)
300 COG2976 Uncharacterized protei 91.9 6 0.00013 32.2 13.4 91 347-439 96-189 (207)
301 COG4785 NlpI Lipoprotein NlpI, 91.5 7 0.00015 32.3 15.3 84 180-264 79-162 (297)
302 PF00515 TPR_1: Tetratricopept 91.3 0.82 1.8E-05 24.8 4.7 27 411-437 3-29 (34)
303 PF00515 TPR_1: Tetratricopept 91.0 0.68 1.5E-05 25.2 4.2 28 447-474 4-31 (34)
304 KOG4570 Uncharacterized conser 90.9 5 0.00011 35.2 10.8 49 285-333 115-163 (418)
305 COG4649 Uncharacterized protei 90.8 7.1 0.00015 31.1 15.9 137 96-233 58-200 (221)
306 COG2909 MalT ATP-dependent tra 90.0 24 0.00053 35.9 28.9 224 246-469 426-684 (894)
307 KOG1586 Protein required for f 89.6 11 0.00025 31.6 18.5 53 354-406 128-186 (288)
308 PF07719 TPR_2: Tetratricopept 89.4 1.1 2.3E-05 24.2 4.2 27 411-437 3-29 (34)
309 PF09613 HrpB1_HrpK: Bacterial 89.3 9.2 0.0002 30.1 13.6 53 108-160 21-73 (160)
310 PF07035 Mic1: Colon cancer-as 89.2 9.8 0.00021 30.3 15.3 32 222-253 16-47 (167)
311 COG2976 Uncharacterized protei 89.1 7 0.00015 31.8 9.7 92 379-475 94-190 (207)
312 KOG0890 Protein kinase of the 89.1 48 0.001 38.1 29.8 62 410-474 1671-1732(2382)
313 PF07035 Mic1: Colon cancer-as 89.1 10 0.00022 30.3 14.6 101 152-261 15-115 (167)
314 COG4455 ImpE Protein of avirul 89.0 2.7 5.8E-05 34.7 7.4 55 103-157 7-61 (273)
315 PF11207 DUF2989: Protein of u 89.0 4.9 0.00011 32.9 9.0 70 323-393 124-197 (203)
316 PRK11619 lytic murein transgly 88.9 28 0.0006 35.1 28.7 117 318-436 254-373 (644)
317 PF11207 DUF2989: Protein of u 88.6 5.3 0.00011 32.7 8.9 71 183-254 123-197 (203)
318 PF08424 NRDE-2: NRDE-2, neces 88.0 20 0.00044 32.5 15.4 79 147-226 47-128 (321)
319 PF13374 TPR_10: Tetratricopep 87.7 1.7 3.8E-05 24.8 4.6 26 411-436 4-29 (42)
320 KOG4234 TPR repeat-containing 87.4 11 0.00023 30.9 9.8 95 348-445 103-202 (271)
321 PF13374 TPR_10: Tetratricopep 87.4 1.8 3.8E-05 24.7 4.4 31 445-475 3-33 (42)
322 KOG4234 TPR repeat-containing 87.4 10 0.00022 31.0 9.6 92 313-404 103-198 (271)
323 PF13181 TPR_8: Tetratricopept 86.9 2.5 5.3E-05 22.8 4.6 30 446-475 3-32 (34)
324 COG5187 RPN7 26S proteasome re 86.9 20 0.00044 31.2 16.3 28 97-124 115-142 (412)
325 COG4455 ImpE Protein of avirul 86.5 6.4 0.00014 32.6 8.2 75 308-383 4-81 (273)
326 PF13929 mRNA_stabil: mRNA sta 86.5 22 0.00047 31.2 15.6 64 370-433 198-262 (292)
327 KOG0276 Vesicle coat complex C 86.3 12 0.00026 36.1 11.0 130 273-434 617-746 (794)
328 KOG4642 Chaperone-dependent E3 86.1 20 0.00043 30.4 11.1 118 315-434 20-142 (284)
329 KOG0890 Protein kinase of the 86.1 72 0.0016 36.8 29.3 151 102-259 1388-1542(2382)
330 PF04097 Nic96: Nup93/Nic96; 85.8 41 0.00089 33.8 21.8 88 242-334 265-356 (613)
331 KOG4077 Cytochrome c oxidase, 85.8 4.3 9.4E-05 30.1 6.3 57 150-206 68-124 (149)
332 KOG2063 Vacuolar assembly/sort 85.5 37 0.00081 35.1 14.7 38 280-317 601-638 (877)
333 PF00637 Clathrin: Region in C 85.5 0.39 8.4E-06 37.4 1.1 53 138-190 14-66 (143)
334 KOG4648 Uncharacterized conser 85.3 5.8 0.00013 35.2 7.9 53 313-367 105-158 (536)
335 TIGR02561 HrpB1_HrpK type III 85.2 16 0.00034 28.4 13.7 52 109-160 22-73 (153)
336 COG4785 NlpI Lipoprotein NlpI, 85.2 21 0.00045 29.8 16.5 63 166-228 99-161 (297)
337 COG3947 Response regulator con 84.8 8.2 0.00018 33.5 8.4 60 133-193 281-340 (361)
338 PF06552 TOM20_plant: Plant sp 84.6 12 0.00027 30.0 8.8 62 370-439 65-137 (186)
339 PF02259 FAT: FAT domain; Int 84.6 32 0.0007 31.5 25.5 66 268-333 144-212 (352)
340 COG1747 Uncharacterized N-term 84.3 39 0.00084 32.2 22.3 182 196-384 62-249 (711)
341 COG1747 Uncharacterized N-term 84.1 40 0.00086 32.2 25.4 95 234-333 65-159 (711)
342 KOG4648 Uncharacterized conser 84.0 3.8 8.2E-05 36.3 6.3 95 348-445 105-199 (536)
343 KOG1464 COP9 signalosome, subu 83.9 27 0.00059 30.1 17.2 119 145-263 41-173 (440)
344 KOG2471 TPR repeat-containing 83.3 42 0.00091 31.8 15.1 106 350-457 250-382 (696)
345 PF13181 TPR_8: Tetratricopept 82.6 4.4 9.5E-05 21.8 4.4 27 411-437 3-29 (34)
346 KOG4077 Cytochrome c oxidase, 81.9 11 0.00023 28.2 6.9 56 324-379 68-123 (149)
347 COG5159 RPN6 26S proteasome re 80.9 35 0.00077 29.7 10.7 32 239-270 129-164 (421)
348 cd08819 CARD_MDA5_2 Caspase ac 80.9 12 0.00026 25.8 6.5 65 116-185 21-85 (88)
349 PRK09687 putative lyase; Provi 80.9 39 0.00086 29.9 27.4 232 95-349 35-276 (280)
350 PF07575 Nucleopor_Nup85: Nup8 80.9 63 0.0014 32.2 16.4 29 93-122 145-173 (566)
351 TIGR03504 FimV_Cterm FimV C-te 80.7 4.5 9.8E-05 23.8 3.9 23 380-402 5-27 (44)
352 PF08424 NRDE-2: NRDE-2, neces 80.4 45 0.00098 30.2 17.9 117 358-475 49-185 (321)
353 TIGR03504 FimV_Cterm FimV C-te 80.4 4.5 9.9E-05 23.8 3.9 26 414-439 4-29 (44)
354 KOG1586 Protein required for f 80.1 36 0.00077 28.8 20.9 23 346-368 160-182 (288)
355 PF07163 Pex26: Pex26 protein; 80.1 30 0.00066 30.1 10.0 21 277-297 125-145 (309)
356 PF07721 TPR_4: Tetratricopept 79.8 3 6.6E-05 21.0 2.7 20 449-468 6-25 (26)
357 KOG1550 Extracellular protein 79.3 70 0.0015 31.7 24.6 46 114-159 229-277 (552)
358 PF13174 TPR_6: Tetratricopept 79.1 6.5 0.00014 20.8 4.2 23 415-437 6-28 (33)
359 PF09477 Type_III_YscG: Bacter 78.3 23 0.0005 25.6 9.2 87 75-169 20-106 (116)
360 PF07163 Pex26: Pex26 protein; 78.1 36 0.00078 29.6 9.9 90 274-363 87-181 (309)
361 PF13174 TPR_6: Tetratricopept 77.5 5.8 0.00013 21.0 3.7 26 135-160 4-29 (33)
362 PF10579 Rapsyn_N: Rapsyn N-te 77.4 9.4 0.0002 25.8 5.1 19 448-466 47-65 (80)
363 PHA02875 ankyrin repeat protei 77.3 66 0.0014 30.4 15.0 77 176-259 9-89 (413)
364 KOG1464 COP9 signalosome, subu 76.6 50 0.0011 28.6 18.8 203 195-397 21-254 (440)
365 KOG4507 Uncharacterized conser 76.2 17 0.00038 35.0 8.3 86 144-229 620-705 (886)
366 PRK09687 putative lyase; Provi 76.2 56 0.0012 29.0 27.7 137 304-455 141-278 (280)
367 PRK14956 DNA polymerase III su 75.4 66 0.0014 30.9 12.0 36 130-165 247-282 (484)
368 PF10579 Rapsyn_N: Rapsyn N-te 75.2 19 0.00042 24.3 6.1 54 379-433 12-67 (80)
369 KOG0686 COP9 signalosome, subu 74.9 71 0.0015 29.6 13.6 93 167-261 151-255 (466)
370 PF11846 DUF3366: Domain of un 74.7 22 0.00048 29.3 8.1 32 406-437 141-172 (193)
371 PF06552 TOM20_plant: Plant sp 74.2 45 0.00098 27.0 9.1 62 113-176 51-123 (186)
372 KOG2471 TPR repeat-containing 73.6 85 0.0018 29.9 13.0 108 278-386 248-381 (696)
373 KOG4642 Chaperone-dependent E3 71.7 63 0.0014 27.5 10.8 119 278-400 18-143 (284)
374 KOG2066 Vacuolar assembly/sort 71.6 1.2E+02 0.0026 30.8 28.3 102 104-212 363-467 (846)
375 KOG4507 Uncharacterized conser 71.4 36 0.00079 33.0 9.1 88 211-299 618-705 (886)
376 COG5159 RPN6 26S proteasome re 71.4 71 0.0015 28.0 14.8 126 206-331 9-151 (421)
377 PF11846 DUF3366: Domain of un 70.4 27 0.00059 28.8 7.6 52 352-403 120-173 (193)
378 TIGR02508 type_III_yscG type I 69.9 38 0.00082 24.3 7.6 51 209-265 48-98 (115)
379 PF07575 Nucleopor_Nup85: Nup8 68.6 39 0.00085 33.6 9.5 25 352-376 507-532 (566)
380 PF04097 Nic96: Nup93/Nic96; 68.2 1.4E+02 0.003 30.1 19.2 43 171-213 116-158 (613)
381 KOG2908 26S proteasome regulat 68.2 93 0.002 28.1 10.4 58 311-368 81-143 (380)
382 cd08819 CARD_MDA5_2 Caspase ac 68.0 38 0.00082 23.5 6.9 67 393-465 21-87 (88)
383 smart00028 TPR Tetratricopepti 67.6 11 0.00024 19.0 3.4 26 411-436 3-28 (34)
384 cd00280 TRFH Telomeric Repeat 66.8 56 0.0012 26.5 7.9 23 137-159 117-139 (200)
385 PF11848 DUF3368: Domain of un 66.5 26 0.00056 21.1 5.2 33 420-452 13-45 (48)
386 cd00280 TRFH Telomeric Repeat 66.0 64 0.0014 26.2 8.2 40 380-422 117-156 (200)
387 PHA02875 ankyrin repeat protei 66.0 1.2E+02 0.0026 28.6 15.6 114 137-259 38-156 (413)
388 PRK10941 hypothetical protein; 64.6 1E+02 0.0022 27.2 10.6 58 345-402 186-243 (269)
389 TIGR02508 type_III_yscG type I 64.3 51 0.0011 23.7 9.4 87 76-170 20-106 (115)
390 KOG0376 Serine-threonine phosp 64.2 18 0.00039 33.9 5.6 83 316-400 15-98 (476)
391 PF13762 MNE1: Mitochondrial s 63.8 68 0.0015 25.0 10.0 78 170-247 43-127 (145)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 62.2 66 0.0014 24.3 8.5 41 115-155 81-123 (126)
393 PF14689 SPOB_a: Sensor_kinase 61.9 22 0.00049 22.8 4.3 26 411-436 25-50 (62)
394 PRK11619 lytic murein transgly 61.3 1.9E+02 0.0042 29.3 35.6 181 213-398 254-463 (644)
395 smart00386 HAT HAT (Half-A-TPR 61.2 22 0.00047 18.4 4.3 24 356-379 3-26 (33)
396 PF07064 RIC1: RIC1; InterPro 60.9 1.1E+02 0.0025 26.6 16.5 64 414-477 184-253 (258)
397 PRK10941 hypothetical protein; 60.5 1.2E+02 0.0026 26.7 10.4 56 103-158 187-242 (269)
398 PRK15180 Vi polysaccharide bio 60.2 1.6E+02 0.0035 28.1 27.1 103 353-456 711-825 (831)
399 KOG2297 Predicted translation 60.0 1.3E+02 0.0028 26.8 17.5 72 315-394 265-341 (412)
400 PF14853 Fis1_TPR_C: Fis1 C-te 59.9 34 0.00075 21.1 4.7 39 414-454 6-44 (53)
401 KOG0292 Vesicle coat complex C 59.8 1.2E+02 0.0027 31.2 10.6 128 316-472 654-781 (1202)
402 PF09986 DUF2225: Uncharacteri 59.0 1.1E+02 0.0024 25.8 10.3 22 418-439 174-195 (214)
403 COG5108 RPO41 Mitochondrial DN 58.7 91 0.002 31.0 9.3 75 310-386 33-115 (1117)
404 PRK13184 pknD serine/threonine 58.5 2.6E+02 0.0055 29.9 26.2 324 100-436 478-867 (932)
405 KOG2396 HAT (Half-A-TPR) repea 58.3 1.8E+02 0.0039 28.0 31.6 89 82-173 92-181 (568)
406 PF11848 DUF3368: Domain of un 58.3 38 0.00083 20.3 5.1 29 144-172 15-43 (48)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 58.1 79 0.0017 23.9 7.7 60 63-122 65-124 (126)
408 PF10345 Cohesin_load: Cohesin 57.2 2.2E+02 0.0048 28.7 36.6 123 71-193 108-252 (608)
409 PF11663 Toxin_YhaV: Toxin wit 56.7 13 0.00029 28.1 2.9 31 387-419 108-138 (140)
410 COG2909 MalT ATP-dependent tra 55.9 2.6E+02 0.0056 29.1 28.8 262 104-365 367-684 (894)
411 PF04190 DUF410: Protein of un 54.7 1.5E+02 0.0032 26.0 17.2 27 372-398 88-114 (260)
412 PF14853 Fis1_TPR_C: Fis1 C-te 54.5 49 0.0011 20.4 6.0 33 378-412 5-37 (53)
413 COG5108 RPO41 Mitochondrial DN 54.2 74 0.0016 31.6 7.9 92 135-228 32-131 (1117)
414 PF11663 Toxin_YhaV: Toxin wit 54.1 16 0.00034 27.7 2.9 34 419-454 105-138 (140)
415 PF12862 Apc5: Anaphase-promot 53.7 76 0.0017 22.4 7.2 20 382-401 49-68 (94)
416 PF12862 Apc5: Anaphase-promot 53.5 77 0.0017 22.3 7.0 23 137-159 47-69 (94)
417 PF09454 Vps23_core: Vps23 cor 53.1 42 0.00091 21.8 4.4 48 96-143 7-54 (65)
418 KOG1308 Hsp70-interacting prot 53.1 24 0.00051 31.7 4.3 48 354-401 128-175 (377)
419 PF13762 MNE1: Mitochondrial s 52.2 1.1E+02 0.0024 23.8 10.6 26 395-420 101-126 (145)
420 PRK10564 maltose regulon perip 51.7 35 0.00075 30.2 5.0 29 413-441 261-289 (303)
421 PF14689 SPOB_a: Sensor_kinase 51.4 43 0.00093 21.5 4.3 46 425-472 6-51 (62)
422 KOG4567 GTPase-activating prot 50.6 1.2E+02 0.0027 26.9 8.0 58 325-386 263-320 (370)
423 PRK10564 maltose regulon perip 50.1 41 0.00089 29.7 5.2 30 134-163 260-289 (303)
424 COG0735 Fur Fe2+/Zn2+ uptake r 50.0 1E+02 0.0023 24.0 7.1 60 398-458 10-69 (145)
425 PRK09857 putative transposase; 49.7 1.8E+02 0.0038 26.1 9.3 64 379-443 211-274 (292)
426 KOG2063 Vacuolar assembly/sort 49.6 3.4E+02 0.0074 28.6 17.8 39 209-247 600-638 (877)
427 KOG3364 Membrane protein invol 49.6 1.2E+02 0.0026 23.3 9.5 68 371-438 29-100 (149)
428 PF10255 Paf67: RNA polymerase 49.4 93 0.002 29.2 7.7 56 346-401 128-191 (404)
429 COG5191 Uncharacterized conser 48.7 32 0.0007 30.4 4.3 80 92-172 102-182 (435)
430 KOG0686 COP9 signalosome, subu 47.6 2.4E+02 0.0052 26.4 15.5 63 201-263 151-215 (466)
431 PRK12798 chemotaxis protein; R 47.3 2.5E+02 0.0054 26.4 20.6 198 248-446 125-332 (421)
432 KOG2422 Uncharacterized conser 47.2 2.9E+02 0.0063 27.2 14.9 154 179-332 251-446 (665)
433 PRK09857 putative transposase; 47.0 1.5E+02 0.0033 26.5 8.5 66 343-408 209-274 (292)
434 KOG4567 GTPase-activating prot 46.4 1.3E+02 0.0027 26.9 7.4 58 290-352 263-320 (370)
435 PF10815 ComZ: ComZ; InterPro 46.2 59 0.0013 19.9 3.8 34 50-83 17-50 (56)
436 PRK13342 recombination factor 46.0 2.7E+02 0.0058 26.4 19.4 34 388-421 244-277 (413)
437 PF10366 Vps39_1: Vacuolar sor 45.9 1.2E+02 0.0025 22.2 7.2 27 411-437 41-67 (108)
438 PF00244 14-3-3: 14-3-3 protei 45.8 2E+02 0.0042 24.8 10.9 40 206-245 7-46 (236)
439 KOG0687 26S proteasome regulat 45.6 2.3E+02 0.005 25.6 15.3 89 83-173 56-150 (393)
440 COG0735 Fur Fe2+/Zn2+ uptake r 45.4 60 0.0013 25.3 5.1 41 104-144 27-68 (145)
441 KOG0991 Replication factor C, 45.3 2E+02 0.0043 24.7 15.7 134 276-419 136-282 (333)
442 PF11123 DNA_Packaging_2: DNA 44.7 85 0.0018 20.9 4.7 33 355-387 12-44 (82)
443 KOG2066 Vacuolar assembly/sort 44.6 3.7E+02 0.008 27.6 27.3 77 96-178 391-467 (846)
444 PF04910 Tcf25: Transcriptiona 44.5 2.6E+02 0.0057 25.9 18.2 57 242-298 110-167 (360)
445 PRK14951 DNA polymerase III su 44.4 3.5E+02 0.0076 27.3 11.4 35 130-165 250-284 (618)
446 PF11817 Foie-gras_1: Foie gra 44.1 1.7E+02 0.0038 25.3 8.4 21 276-296 184-204 (247)
447 KOG2659 LisH motif-containing 44.0 2E+02 0.0044 24.4 9.8 66 92-157 21-90 (228)
448 COG4259 Uncharacterized protei 43.6 1.2E+02 0.0026 21.7 6.3 40 117-156 57-97 (121)
449 KOG0128 RNA-binding protein SA 43.3 4E+02 0.0086 27.6 30.9 98 95-194 111-218 (881)
450 PF09454 Vps23_core: Vps23 cor 43.1 93 0.002 20.3 4.9 49 129-178 6-54 (65)
451 KOG4814 Uncharacterized conser 42.9 2.3E+02 0.005 28.3 9.2 58 377-435 397-454 (872)
452 PRK13342 recombination factor 42.6 3E+02 0.0066 26.1 17.6 21 249-269 244-264 (413)
453 PF11838 ERAP1_C: ERAP1-like C 42.5 2.6E+02 0.0056 25.2 18.2 78 114-194 147-229 (324)
454 KOG0403 Neoplastic transformat 42.4 3.1E+02 0.0067 26.1 17.4 266 170-456 218-586 (645)
455 PF09986 DUF2225: Uncharacteri 42.4 2.1E+02 0.0045 24.1 11.7 23 381-403 172-194 (214)
456 TIGR02397 dnaX_nterm DNA polym 41.9 2.8E+02 0.006 25.5 11.5 41 134-176 247-287 (355)
457 PF10475 DUF2450: Protein of u 41.9 2.6E+02 0.0055 25.0 10.1 26 371-396 194-219 (291)
458 PF00244 14-3-3: 14-3-3 protei 41.8 2.3E+02 0.0049 24.4 10.2 59 275-333 6-65 (236)
459 KOG1839 Uncharacterized protei 41.5 4.2E+02 0.009 29.1 11.5 150 247-396 944-1121(1236)
460 PRK08691 DNA polymerase III su 41.2 4.1E+02 0.009 27.2 11.7 35 130-165 245-279 (709)
461 PRK11639 zinc uptake transcrip 40.9 1.6E+02 0.0035 23.7 7.1 35 111-145 39-74 (169)
462 PRK15180 Vi polysaccharide bio 40.8 3.4E+02 0.0073 26.1 28.3 117 79-199 308-424 (831)
463 PF10366 Vps39_1: Vacuolar sor 40.8 1.4E+02 0.0031 21.8 7.3 26 169-194 42-67 (108)
464 PF15297 CKAP2_C: Cytoskeleton 40.5 2.6E+02 0.0056 25.6 8.7 65 356-420 119-186 (353)
465 cd07153 Fur_like Ferric uptake 40.1 87 0.0019 23.0 5.2 39 107-145 10-49 (116)
466 PRK14970 DNA polymerase III su 40.0 3.1E+02 0.0067 25.4 10.3 38 134-173 238-275 (367)
467 PF04090 RNA_pol_I_TF: RNA pol 39.5 2.2E+02 0.0048 23.6 11.2 50 341-390 42-92 (199)
468 PRK14962 DNA polymerase III su 38.9 3.8E+02 0.0081 26.1 14.8 39 142-180 254-292 (472)
469 PF01475 FUR: Ferric uptake re 38.9 76 0.0016 23.6 4.7 44 138-181 14-57 (120)
470 KOG0376 Serine-threonine phosp 38.7 70 0.0015 30.3 5.2 57 104-160 11-67 (476)
471 KOG1308 Hsp70-interacting prot 38.6 39 0.00085 30.4 3.4 91 178-270 126-217 (377)
472 PF09868 DUF2095: Uncharacteri 38.5 1.5E+02 0.0032 21.8 5.6 29 104-132 68-96 (128)
473 PF11817 Foie-gras_1: Foie gra 38.5 1.8E+02 0.004 25.1 7.7 21 346-366 184-204 (247)
474 PRK09111 DNA polymerase III su 38.3 4.3E+02 0.0094 26.6 14.5 29 136-165 264-292 (598)
475 PF09868 DUF2095: Uncharacteri 38.1 1.6E+02 0.0034 21.7 5.7 24 138-161 68-91 (128)
476 PRK11639 zinc uptake transcrip 38.1 1.9E+02 0.0042 23.2 7.2 57 369-426 21-77 (169)
477 KOG1839 Uncharacterized protei 38.1 3.9E+02 0.0085 29.3 10.8 26 129-154 971-996 (1236)
478 PF14561 TPR_20: Tetratricopep 37.7 1.4E+02 0.0031 20.9 9.0 32 371-402 19-50 (90)
479 PRK14961 DNA polymerase III su 37.3 3.4E+02 0.0075 25.2 10.4 36 129-165 244-279 (363)
480 PF09477 Type_III_YscG: Bacter 37.2 1.7E+02 0.0036 21.5 9.5 30 163-194 68-97 (116)
481 COG5187 RPN7 26S proteasome re 37.1 3E+02 0.0065 24.4 13.7 25 342-366 117-141 (412)
482 PF04190 DUF410: Protein of un 37.0 2.9E+02 0.0063 24.2 17.9 14 109-122 2-15 (260)
483 PLN03025 replication factor C 36.0 3.3E+02 0.0072 24.6 14.9 34 131-165 225-258 (319)
484 cd07153 Fur_like Ferric uptake 35.9 1.1E+02 0.0024 22.5 5.2 47 380-426 6-52 (116)
485 PF14669 Asp_Glu_race_2: Putat 35.8 2.5E+02 0.0055 23.2 13.6 171 264-434 2-206 (233)
486 KOG0545 Aryl-hydrocarbon recep 35.3 3E+02 0.0064 23.9 9.8 91 347-438 185-293 (329)
487 PF14561 TPR_20: Tetratricopep 35.1 1.6E+02 0.0034 20.7 8.6 30 129-158 20-49 (90)
488 KOG3364 Membrane protein invol 35.0 2.1E+02 0.0046 22.1 8.2 65 129-194 30-99 (149)
489 PF15297 CKAP2_C: Cytoskeleton 34.8 3.6E+02 0.0078 24.7 9.5 65 113-177 119-186 (353)
490 PRK06645 DNA polymerase III su 34.7 4.5E+02 0.0098 25.8 11.3 36 129-165 256-291 (507)
491 KOG0687 26S proteasome regulat 34.7 3.5E+02 0.0076 24.5 15.3 161 32-194 38-209 (393)
492 PF09670 Cas_Cas02710: CRISPR- 34.7 3.9E+02 0.0085 25.0 13.0 55 313-368 139-197 (379)
493 PF12926 MOZART2: Mitotic-spin 34.3 1.6E+02 0.0035 20.5 8.5 43 152-194 29-71 (88)
494 PF10475 DUF2450: Protein of u 34.2 3.4E+02 0.0074 24.2 14.0 23 268-290 195-217 (291)
495 KOG4279 Serine/threonine prote 33.8 5.5E+02 0.012 26.5 15.0 113 253-368 181-315 (1226)
496 PRK09462 fur ferric uptake reg 33.5 2.3E+02 0.005 22.1 7.4 32 113-144 33-65 (148)
497 KOG0545 Aryl-hydrocarbon recep 33.4 3.2E+02 0.0069 23.7 10.8 62 343-404 233-294 (329)
498 COG0790 FOG: TPR repeat, SEL1 33.4 3.4E+02 0.0074 24.0 21.2 203 145-357 55-289 (292)
499 PF12069 DUF3549: Protein of u 33.4 3.8E+02 0.0083 24.5 11.9 137 309-454 170-308 (340)
500 PRK09462 fur ferric uptake reg 33.3 2.3E+02 0.0051 22.0 7.7 36 389-424 32-67 (148)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-61 Score=481.80 Aligned_cols=415 Identities=17% Similarity=0.289 Sum_probs=343.6
Q ss_pred CCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 137 (480)
..+...+..++..+.+.++ .|+++|++|....-..++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 3445567777777776665 78888888876655567777788888888888888888888887764 678888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCCh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNL 216 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 216 (480)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ +..||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 888888888888888888888888888888888888888888888888888888876 6778888888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCccHHHHHHHHHHhhccCCHHHHHHHHH
Q 011652 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS--TVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCC
Q 011652 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEAD 373 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 373 (480)
.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ +..|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887 77888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||..++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 454 LIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
|.+.|++++|.+++++|.+.+..|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCC
Confidence 888888888888888887766554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-61 Score=478.63 Aligned_cols=426 Identities=18% Similarity=0.301 Sum_probs=400.0
Q ss_pred chhHHHHHhhCCCC-CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIR-VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123 (480)
Q Consensus 47 ~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 123 (480)
+..+...|...|+. ++.-....++..|...+. .|+.+|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|
T Consensus 389 Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45666778888864 555566677888877665 89999987742 89999999999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChh
Q 011652 124 RTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSK 201 (480)
Q Consensus 124 ~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 201 (480)
.+.|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. +..||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999987 8899999
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVD--TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999999999999999999986 679999999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 360 YRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.++|++|.+ +..||..+|+.|+.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999988 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhhhCCC
Q 011652 439 GIRPSGETFGKLRKLLIK----E-------------------GREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 439 ~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~l~~~~ 477 (480)
|+.||..+|+.++..|.+ . +..+.|..++++|.+.+..|
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999876542 1 22467999999999877665
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-57 Score=449.78 Aligned_cols=412 Identities=19% Similarity=0.276 Sum_probs=388.5
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
..+++..+.+.|+.|+..+++.++..+.+.+. .|.++|+.+. .||..+|+.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45788888899999999999999999998887 8999999884 2689999999999999999999999999999
Q ss_pred hCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 125 TKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 125 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
+.++ |+..+|..++.+|++.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+.|.. +|..+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~ 293 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAW 293 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999974 599999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
|.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|
T Consensus 374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999975 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 364 RRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 364 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
+.|.+ +..|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+. .
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~ 524 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--G 524 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--C
Confidence 99986 88999999999999999999999999998876 56799999999999999999999999999999754 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 442 P-SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
| +..+|..+++.|.+.|++++|.+++++|.+.+.
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5 467899999999999999999999999988653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.2e-57 Score=456.30 Aligned_cols=407 Identities=16% Similarity=0.238 Sum_probs=360.9
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011652 48 VVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
.+++..+.+.|+.++..+++.++..+.+.++ .|.++|+.+. .+|..+||.+|.+|++.|++++|.++|++|..
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4666777778888888888888888888887 7999999874 26889999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH
Q 011652 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204 (480)
Q Consensus 126 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (480)
.+. |+..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHH
Confidence 998 99999999999999999999999999999999999999999999999999999999999999997 47999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.++.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH----------------
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN---------------- 348 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---------------- 348 (480)
++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988865 4666777777777777777777777777764 36666666665555
Q ss_pred -------------------HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 349 -------------------GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 349 -------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
+|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 455555555555555554 688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
.||+.++.+|++.|++++|.++|++|. +.|+.|+..+|..++.+|.+.|++++|.+++++|.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999999999999999999999999998 67999999999999999999999999999999884
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-56 Score=441.49 Aligned_cols=411 Identities=17% Similarity=0.243 Sum_probs=324.4
Q ss_pred HHHHhhC-CCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011652 51 DTALDQS-GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127 (480)
Q Consensus 51 ~~~l~~~-~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 127 (480)
...|... +..|+..++..++..|.+.+. .|.+++..+.+ .|+.||..+|+.++..|++.|+++.|.++|++|.+
T Consensus 110 f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-- 186 (697)
T PLN03081 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-- 186 (697)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--
Confidence 3444443 366777777777777776555 57777777644 36777788888888888888888888888877754
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 206 (480)
++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+ +..||..+|+.|
T Consensus 187 -~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 187 -RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred -CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 466778888888888888888888888887777778888888888888888888777777777766 677788888888
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH
Q 011652 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (480)
+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 8888888888888888888753 577888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
++|.+++..|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888764 57788888888888888888888888888
Q ss_pred Hh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 367 IK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 367 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
.+ +..||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+.
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~ 494 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTV 494 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCH
Confidence 77 7888888888888888888888888888888865 578888888888888888888888888877665 577888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+|.+++.+|...|+++.|.++++++.++.+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 88888888888888888888888888766554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-55 Score=446.90 Aligned_cols=419 Identities=17% Similarity=0.193 Sum_probs=381.3
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
+..+...|...|+.|+..++..+++.|...+. .+.+++..+.+ .|+.|++.+|+.+|.+|++.|+++.|.++|++|.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 249 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC
Confidence 34566677788999999999999999987665 68888888855 4888999999999999999999999999999996
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhH
Q 011652 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTY 203 (480)
Q Consensus 125 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 203 (480)
. ++..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+ +..||..+|
T Consensus 250 ~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 250 R---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred C---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 5 477899999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 999999999999999999999997 4799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 58899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------CCCHHHHH
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF------------------------------IPSMHTFS 413 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~p~~~~~~ 413 (480)
++|..+.+||..+|+.++.+|++.|.++.+.+++..+.+.|+ .||..+|+
T Consensus 479 ~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n 558 (857)
T PLN03077 479 RQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN 558 (857)
T ss_pred HHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH
Confidence 999988889998887766555554444444444444433332 47889999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhhCCC
Q 011652 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN-LLVKEP 477 (480)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~l~~~~ 477 (480)
.++.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|.+++|.++++.|. +.+..|
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998 455555
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.3e-27 Score=243.00 Aligned_cols=400 Identities=12% Similarity=0.063 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
++..+..+...+...++ .|.+.|+.+....+ .+...+..+...+...|++++|.+.|+.+....+.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 33444444444433333 55666655543322 344455555555555555555555555555555545555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
.+.+.|+.++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+....+.+..+|..+..++...|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554433 334444444555555555555555555555444444445555555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---------------------------------C
Q 011652 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV---------------------------------C 266 (480)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------------~ 266 (480)
...|+++.+.. +.+...+..+..++...|++++|...++++.+.. .
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555554432 1133344444444555555555555555444432 0
Q ss_pred CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
+.+...+..+...+...|++++|...|+.+...+ |+..++..+...+.+.|++++|...+..+.+... .+...+..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 2333444444455555555555555555554432 2223444445555555555555555555554422 244455555
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011652 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
...|...|+.++|..+|+++.+..+.++.++..+...+...|+ .+|...++++..... -+..++..+...+...|+++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHH
Confidence 5555555666666666666555555555555666666666555 556666665554432 13445555666666667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 427 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+|..+++++++.+.. +..++..+..++.+.|++++|.+++++|.
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777765532 66666667777777777777777776664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4e-26 Score=237.45 Aligned_cols=397 Identities=14% Similarity=0.110 Sum_probs=291.9
Q ss_pred HHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q 011652 69 VLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146 (480)
Q Consensus 69 ~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 146 (480)
+...+...++ .|+++++.+....+ .++.+|..+...+...|++++|.+.|+++....+.+...+..+...+...|+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 3444444444 89999988865533 6788999999999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
+++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++....+.+...+..++..+.+.|++++|..+++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998875 6678899999999999999999999999998877778889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH
Q 011652 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (480)
.+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 8754 4467889999999999999999999999998764 4567778888999999999999999999887653 22455
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHH---------------------------------HHHHHHhC
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI---------------------------------ILNGLIGR 353 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---------------------------------l~~~~~~~ 353 (480)
++..++..+...|++++|..+++.+.+.+. .+...+.. +..++.+.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHC
Confidence 555555555555555555555555554422 13333444 44444455
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
|+.++|.+.++.+.+..+.+...+..+...|...|++++|.+.|+++.+... ++...+..+...+...|+ .+|+..++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 5555555555555544455555555555556666666666666666555432 345555555666666665 55666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 434 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++.+.. +.++.++..+..++...|++++|.+.++++.+..+
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 655432 22344455566666677777777777777766554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4e-22 Score=186.26 Aligned_cols=301 Identities=16% Similarity=0.133 Sum_probs=166.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCh
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 182 (480)
.+...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445667777788888777777766667777777777777777777777777766431111 23456666677777777
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHH
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~ 258 (480)
++|..+|+++.+..+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.+.+
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777776654555666666666777777777777777666654322211 12233344444555555555555
Q ss_pred HHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+++.+.. +.+.. .+..+...+.+.|++++|...++++.+.+...
T Consensus 204 ~~al~~~-p~~~~-----------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAAD-PQCVR-----------------------------------ASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHC-cCCHH-----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 5544432 22233 34444444445555555555555544432211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
...++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...+..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 1233444555555555555555555555442 223333455555555555555555555555543 2555555555544
Q ss_pred HHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 011652 419 LCD---KGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 419 ~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
+.. .|+.+++..++++|.+.++.|++.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 443 335555555555555544444443
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-21 Score=175.12 Aligned_cols=371 Identities=16% Similarity=0.102 Sum_probs=316.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHH-HHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA-FNGLL 173 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll 173 (480)
.-.++|..+.+.+-..|++++|+.+++.+.+..+...+.|..+..++...|+.+.|.+.|....+. .|+... .+.+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 356789999999999999999999999999999988999999999999999999999999998875 465544 34455
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 252 (480)
..+...|++++|...+.+..+..+--...|+.|...+-..|++..|++.|++..+. .|+ ...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 56667899999999999888765656788999999999999999999999999874 454 567888999999999999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|...+.+..... +.....+..+...|...|+.+.|+..|++..+.... -...|+.|..++-..|++.+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999887763 445677888888899999999999999999876322 36789999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHT 411 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~ 411 (480)
..... .....+.|...+...|.++.|..+|....+-.+.-....+.|...|-+.|++++|...+++..+. .|+ ...
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda 424 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADA 424 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHH
Confidence 86322 45678889999999999999999999999877777788999999999999999999999998874 465 468
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|+.+...|-..|+.+.|...+.+++.. .|.. ...+.|...|...|+..+|..-++...++++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999874 4553 45778888999999999999999999888764
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.3e-22 Score=184.15 Aligned_cols=293 Identities=15% Similarity=0.118 Sum_probs=216.5
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD---IVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 252 (480)
+...|++++|...|.++.+..+.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455566666666666554444555566666666666666666666666654321111 234566667777777777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD----VAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777776643 44566677777777777777777777777776543322 224556777888999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
+++.+.... +...+..+...+.+.|++++|.++++++.+..+.+ ..++..++.+|...|++++|...++++.+.. |
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 999876422 45577788899999999999999999998743333 4678899999999999999999999998864 6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhh
Q 011652 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK---EGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~l~ 474 (480)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 6677788999999999999999999999875 6888899888877765 568999999999998643
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2e-20 Score=183.13 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=166.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+.+++.+....+ .+...+..++......|++++|...++++....|.+...+..+...+...|++++|+..++++.
T Consensus 60 ~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 60 VGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred hhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555443332 2344444444555556666666666666666555555555566666666666666666666655
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (480)
+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....++...+
T Consensus 138 ~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 138 LAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred HhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHH
Confidence 542 334455555555566666666666666555443333333333322 245556666666666655544322233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED----AVDTFLEMEKNGILADVAMYNALIGA 314 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~ 314 (480)
..+...+...|++++|+..++...... +.+...+..+...+...|++++ |...+++..+.. +.+...+..+...
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 293 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344455555666666666666555543 3344455555555555665553 555555555432 1244455555555
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
+...|++++|...+++..+.... +...+..+..++.+.|++++|...++.+....+.+...+..+..++...|+.++|.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 56666666666666655554222 23344445555555666666666665555433333333333445555556666666
Q ss_pred HHHHHHHhC
Q 011652 395 KVWKYMKLK 403 (480)
Q Consensus 395 ~~~~~~~~~ 403 (480)
+.|++..+.
T Consensus 373 ~~l~~al~~ 381 (656)
T PRK15174 373 SVFEHYIQA 381 (656)
T ss_pred HHHHHHHHh
Confidence 666655543
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=9.1e-20 Score=190.76 Aligned_cols=382 Identities=10% Similarity=0.044 Sum_probs=242.7
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHH------------HHHHHHHHh
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFC------------IIMRKYARV 144 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~------------~li~~~~~~ 144 (480)
.|...|+.+.+..+ .+...+..+...+.+.|++++|+..|++..+..+ +....|. .....+.+.
T Consensus 287 ~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 66777766655432 3566777777777777777777777777766555 1211111 123345566
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 011652 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+..+.+...+..+...+. .++.++|..+++
T Consensus 365 g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 77777777777776654 4455566666677777777777777777776644445555544444432 223344444443
Q ss_pred HHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011652 225 EMVDTGCN--------PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 225 ~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
.+...... .....+..+...+...|++++|++.+++..+.. +.+...+..+...|...|++++|...++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32211000 001122233444555666666666666666543 334455555666666666666666666666
Q ss_pred HHCCCCCCHHHHHH--------------------------------------------HHHHHHHcCCHhHHHHHHHHHH
Q 011652 297 EKNGILADVAMYNA--------------------------------------------LIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 297 ~~~~~~~~~~~~~~--------------------------------------------li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.+... .+...+.. ....+...|+.++|..+++.
T Consensus 522 l~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-- 598 (1157)
T PRK11447 522 AQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-- 598 (1157)
T ss_pred HHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--
Confidence 54321 12222222 23344455566666655541
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 412 (480)
.+.+...+..+...+.+.|+.++|+..++.+.+..|.+...+..++..|...|++++|.+.++.+..... .+...+
T Consensus 599 ---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~ 674 (1157)
T PRK11447 599 ---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQ 674 (1157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHH
Confidence 2334556677888889999999999999999988788899999999999999999999999998876532 255667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR--P---SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
..+..++...|++++|.+++++++..... | +...+..+...+...|++++|.+.+++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999999999864322 2 224566678888899999999999988864
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=5.1e-19 Score=173.99 Aligned_cols=389 Identities=13% Similarity=0.043 Sum_probs=284.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+..|+.+.... |++..|..+..+|.+.|++++|++.++...+.++.+..+|..+..++...|++++|+..|....
T Consensus 145 ~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 145 KAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7899998876543 5677888889999999999999999999998888888889999999999999999988887665
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC----------------------------CCC-ChhhHHHHHHH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----------------------------FIP-DSKTYSILLEG 209 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~-~~~~~~~l~~~ 209 (480)
..+-..+.. ...++..+........+...++.-... ..+ ....+..+...
T Consensus 222 ~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 222 IIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 443111111 111111111100011111111110000 000 00111111111
Q ss_pred ---hhcCCChhHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 210 ---WGKDPNLPRAREIFREMVDTG-CNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 210 ---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+++..... +.....|..+..++...|
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCC
Confidence 122467899999999998764 223 35567888888899999999999999998764 344668888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|+..++
T Consensus 380 ~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 380 DPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988764 336788888999999999999999999999987433 55677778888999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM------HTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...+..+.++..++.+...+...|++++|.+.|++........+. ..++.....+...|++++|..++++....
T Consensus 458 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999887888999999999999999999999999998876422111 11222222344469999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 439 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
. +.+...+..+...+.+.|++++|.+++++..++..
T Consensus 538 ~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 538 D-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 4 23445688899999999999999999999887754
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.1e-20 Score=180.96 Aligned_cols=335 Identities=11% Similarity=0.047 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
.-...++..+.+.|++++|..+++......+-+...+..++.+....|++++|+..++.+.+.. |.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445567778899999999999999999988778888888888899999999999999999875 567788888999999
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
..|++++|...+++.....+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999998767788899999999999999999999999887654332 2333333 347889999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHHh
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN----VYRVLKDMNS 333 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 333 (480)
++.+......++......+..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776534445555666788899999999999999998764 3367788888999999999986 8999999988
Q ss_pred CCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 011652 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTF 412 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~ 412 (480)
..+. +...+..+...+...|++++|...++++....+.+...+..+..++.+.|++++|...++.+...+ |+. ..+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 6433 567888899999999999999999999998778888889999999999999999999999998764 444 334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
..+..++...|+.++|...|+++.+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445678899999999999999998754
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.4e-19 Score=181.07 Aligned_cols=408 Identities=10% Similarity=0.033 Sum_probs=312.7
Q ss_pred CCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011652 58 GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
...+++..+...+......++ .|++++..+.... +.+...+..+...+.+.|++++|.++|++.....|.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 346677777777776665555 8888888876522 257778999999999999999999999999998888888899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
.++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+..|.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999998874 55666 88888899999999999999999999878888888888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHhhhC-CCCccHH-HH----HH
Q 011652 216 LPRAREIFREMVDTGCNPDI------VTYGIMVDVLC-----KAGRV---DEALGIVKSMDST-VCRPTSF-IY----SV 275 (480)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 275 (480)
.+.|+..++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998886654 2221 11122222222 12234 7788888888754 1122221 11 11
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---NSRTCNIILNGLI 351 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 351 (480)
.+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22335678999999999999999988753221 1234566666789
Q ss_pred hCCChHHHHHHHHHHHhcCCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 352 GRGETDEAYRVFRRMIKLCEA------------D---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
..|++++|..+++.+....++ + ...+..+...+...|++++|.++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 999999999999999875432 2 2355677888899999999999999998764 33678889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 417 NGLCDKGIVSDSCVLLEDMIEKGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+...|++++|++.++++++.. |+ ...+...+..+.+.|++++|..+++++.+..++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998754 44 556667777889999999999999999887654
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.8e-20 Score=166.73 Aligned_cols=386 Identities=13% Similarity=0.112 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 011652 63 PEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140 (480)
Q Consensus 63 ~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 140 (480)
.+.+..+-..+...++ .|+.+++.+.+..+ ..+..|..+..++...|+.+.|.+.|.+..+.+|........+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 3455556666666666 79999988876654 5789999999999999999999999999998887555556667777
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHH
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (480)
.-..|+..+|...|.+.++.. +--..+|+.|...+-..|+...|++.|++..+-.+.-...|-.|...|...+.+++|.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 778999999999999888753 3335678999999999999999999999998866666789999999999999999999
Q ss_pred HHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 221 EIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
..|.+.... .| ..+.+..+.-.|...|..+-|+..+++..+.. +.-...|+.+..++-..|+..+|.+.|.+....
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998865 34 46778888888999999999999999998864 334778999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHH
Q 011652 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 300 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
. +.-....+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..+++..+..|.-...|+
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 3 235678889999999999999999999999875 343 457888999999999999999999999986667778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIK 456 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 456 (480)
.+...|-..|+.+.|.+.+.+.+..+ |. ...++.|...|-..|+..+|+.-+++.+. ++||. ..+..++.++.-
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 99999999999999999999998865 43 57889999999999999999999999986 45654 345555555544
Q ss_pred cCCHH
Q 011652 457 EGRED 461 (480)
Q Consensus 457 ~g~~~ 461 (480)
..+|.
T Consensus 503 vcdw~ 507 (966)
T KOG4626|consen 503 VCDWT 507 (966)
T ss_pred Hhccc
Confidence 34433
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=7.4e-19 Score=184.00 Aligned_cols=367 Identities=10% Similarity=0.010 Sum_probs=280.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-CHHHH------------
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAF------------ 169 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 169 (480)
....+...|++++|+..|++..+..+.+..++..+...+.+.|++++|+..|++..+..... ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 35567789999999999999999988889999999999999999999999999998764221 11112
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
......+.+.|++++|...|+++....+.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 122446778999999999999999877778888999999999999999999999999976422 4556666776664 56
Q ss_pred CHHHHHHHHHHhhhCCCC--------ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 250 RVDEALGIVKSMDSTVCR--------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
+.++|..+++.+...... .....+..+...+...|++++|+..|++..+... .+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 789999988776432100 0122355667788899999999999999988643 2567788888999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH----------------------------------
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI---------------------------------- 367 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------------------------- 367 (480)
++|...++++.+.... +...+..+...+...++.++|...++.+.
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999999875322 23233222223334444444444433221
Q ss_pred ------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 368 ------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 368 ------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
+..+.+...+..+...+.+.|++++|.+.|+++.+... .+...+..++..+...|++++|.+.++.+.+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 02456667778889999999999999999999998753 377889999999999999999999999887643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+......+..++...|++++|.++++++.+..+
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 3455667788889999999999999999887643
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.5e-17 Score=160.29 Aligned_cols=369 Identities=9% Similarity=-0.076 Sum_probs=271.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+......+.+.|++++|+..|++.....+ ++..|..+..+|.+.|++++|++.++...+.. +.+..++..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345667788999999999999999887654 67789999999999999999999999999875 5567889999999999
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC----------------------------
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG---------------------------- 230 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 230 (480)
.|++++|..-|.........+......++..+.. ..+........+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999988876644212221111111111111 01111111111100
Q ss_pred ---CCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHhhhCC--CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 231 ---CNPD-IVTYGIMVDV---LCKAGRVDEALGIVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 231 ---~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
..+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+..++...|++++|+..+++..+...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 0000 0011111111 122468999999999998764 233456788888899999999999999999987632
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 302 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...|++..+..+.+...+..+.
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 24667888888999999999999999999886433 5678888999999999999999999999998888889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE------TFGKLRKLLI 455 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~ 455 (480)
.++.+.|++++|...+++..... +.+...|..+...+...|++++|.+.|++..+.....+.. .+......+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998764 2367889999999999999999999999998753221111 1122222334
Q ss_pred hcCCHHHHHHHHHHHHhhhCC
Q 011652 456 KEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 456 ~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..|++++|.+++++..++++.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCC
Confidence 469999999999998887654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.4e-17 Score=166.80 Aligned_cols=376 Identities=12% Similarity=0.069 Sum_probs=290.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
+.++....-.+.+....|+.++|++++.......+.+...+..+...+...|++++|.++|+...+.. |.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35666666778888999999999999999987666778889999999999999999999999998864 55677788888
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.++...|++++|...++++....+.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999999987777888 999999999999999999999999986433 45556667888888999999
Q ss_pred HHHHHHHhhhCCCCccH------HHHHHHHHHhh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHH
Q 011652 254 ALGIVKSMDSTVCRPTS------FIYSVLVHTYG-----VENRI---EDAVDTFLEMEKN-GILADVA-MYN----ALIG 313 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li~ 313 (480)
|++.++.... .|+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999987664 2221 11122222222 22334 7788888888754 2223221 111 1133
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD----ADTYTMMIKMFCQGG 388 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 388 (480)
.+...|++++|...|+.+.+.+.. |+. ....+...+...|++++|+..|+.+....+.+ ......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999987532 332 22335678999999999999999988743322 355677778889999
Q ss_pred CHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRF-----------IPS---MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999887531 123 2345667788999999999999999998764 44677788899999
Q ss_pred HhcCCHHHHHHHHHHHHhhhCCC
Q 011652 455 IKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 455 ~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
...|++++|.+.+++..++.+..
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999887653
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=7.4e-16 Score=151.68 Aligned_cols=401 Identities=11% Similarity=0.025 Sum_probs=288.2
Q ss_pred HHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q 011652 68 DVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145 (480)
Q Consensus 68 ~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 145 (480)
.++..+...+. .|+..++.... +-+.+......+...+...|++++|+++|+++.+..|.++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 44444433343 78888887762 222345555555667888899999999999998888877888888888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH
Q 011652 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
+.++|++.++.+... .|+...+..++..+...++..+|++.++++.+..|.+...+..+...+.+.|-...|.++..+
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 999999998888775 455555555555555566666688888888887777888888888888888888888877665
Q ss_pred HHHcCCCCChhhH------HHHHHHH---H--hcCC---HHHHHHHHHHhhhC-CCCccH-H----HHHHHHHHhhccCC
Q 011652 226 MVDTGCNPDIVTY------GIMVDVL---C--KAGR---VDEALGIVKSMDST-VCRPTS-F----IYSVLVHTYGVENR 285 (480)
Q Consensus 226 ~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~ 285 (480)
-.+. +.+....+ ...++.- . ...+ .+.|+.-++.+... +..|.. . ...-.+-++...|+
T Consensus 229 ~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 229 NPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred Cccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 3321 11111101 1111110 0 1112 34455555555542 112322 1 22244567788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhCCChHHHH
Q 011652 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV-----APNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
+.++++.|+.+...+.+....+-.++..+|...++.++|..++..+..... .++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999999888776677888999999999999999999999876531 223333577888999999999999
Q ss_pred HHHHHHHhcCC------------CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011652 361 RVFRRMIKLCE------------ADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 361 ~~~~~~~~~~~------------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (480)
.+++.+.+..| ||+ ..+..++..+...|+..+|++.++++....+ -|......+...+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCH
Confidence 99999987322 221 2345567788899999999999999987653 4888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 426 SDSCVLLEDMIEKGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 426 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+|...++.+... .|+ ..+....+.++...|++++|..+.+++.+..++
T Consensus 467 ~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 467 RKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 9999999777664 344 455667888888999999999999888777654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1e-15 Score=150.76 Aligned_cols=392 Identities=12% Similarity=0.081 Sum_probs=289.3
Q ss_pred HHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSV-RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
..|+..|+.+.+..+ .+. .++ .++..+...|+.++|+..+++.....+........+...+...|++++|+++|++
T Consensus 51 ~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 51 APVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred HHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 389999988876644 222 233 8888888999999999999999844445566666667899999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChh
Q 011652 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (480)
+.+.. |.++..+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++++.+... -+..
T Consensus 128 aL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e 204 (822)
T PRK14574 128 SLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEE 204 (822)
T ss_pred HHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHH
Confidence 99876 55677788888899999999999999999987633 444455555555556677679999999998742 2567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH------HHHHHHh-----hccCC---HHHHHHHHHHHHHC-CC
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY------SVLVHTY-----GVENR---IEDAVDTFLEMEKN-GI 301 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~g~---~~~a~~~~~~~~~~-~~ 301 (480)
.+..++.++.+.|-...|.++..+-...- .+....+ ...++.- ....+ .+.|+.-++.+... +.
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 77888899999999999988877644321 1111111 1111110 01122 34455555555541 12
Q ss_pred CCCH-HHH----HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC------
Q 011652 302 LADV-AMY----NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC------ 370 (480)
Q Consensus 302 ~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 370 (480)
.|.. ..| .-.+-++...|++.++.+.++.+...+.+....+-..+..+|...+++++|+.+++.+....
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~ 363 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN 363 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC
Confidence 2322 222 23345778899999999999999988866566688899999999999999999999997622
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF-----------IPS--M-HTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+++......|..+|...+++++|..+++.+.+... .|| - ..+..++..+...|+..+|++.++++.
T Consensus 364 ~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 364 SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444467899999999999999999999987321 122 2 234456777889999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 437 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
... +-|......+...+...|++.+|++.++....+.+.+
T Consensus 444 ~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 444 STA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 764 5588889999999999999999999998888876653
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=2.7e-15 Score=129.39 Aligned_cols=399 Identities=15% Similarity=0.175 Sum_probs=267.6
Q ss_pred HHHHHhCC---CchhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH-----HHHHHHHHHhhc---C---------------
Q 011652 38 ISKIMLSS---PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT-----LAFCFFKWAEKQ---Q--------------- 91 (480)
Q Consensus 38 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~a~~~~~~~~~~---~--------------- 91 (480)
+.+.+.+. ....+...|++.|++.++.+-..+++...-... .-.+-|-.+... .
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 44555444 456788999999999999998888875432211 111112111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
-.+.+..+|..+|.++++--..+.|.+++++...... .+..+|+.+|.+-.-... .++..+|....+.||..|+|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 1224667888888888888888888888888877666 888888888876554332 67788888888888888899
Q ss_pred HHHHHHHccCChhh----HHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhH-HHHHHHHHHH----cCCCC----Chh
Q 011652 171 GLLSALCKSKNVRK----AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR-AREIFREMVD----TGCNP----DIV 236 (480)
Q Consensus 171 ~ll~~~~~~~~~~~----a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~ 236 (480)
+++.+.++.|+++. |.+++.+|++ ++.|...+|..+|..+++.++..+ |..++.+... ..++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 88888888887665 4556667777 888888888888888888887644 4444444432 22222 344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCcc---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTV----CRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
.|...+..|.+..+.+-|.++..-+.... +.|+ ...|..+....|.....+.....|+.|.-+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 56677788888888888888776664321 1222 3345667777788888888888888888777778888888
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-Ch---H----------HHHHHHHHHHh------c
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ET---D----------EAYRVFRRMIK------L 369 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~---~----------~a~~~~~~~~~------~ 369 (480)
.++++..-.|.++-.-+++.++...|...+...-.-++..+++.. +. + -|..+++.... .
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 888888888888888888888888775555555444444444433 11 0 01111111111 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-F---IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 440 (480)
........+.++-.+.+.|+.++|.+++..+.+.+ - .|.......++..-...+....|..+++-|...+.
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34455667777788888889999988888885442 1 23333444566666777888888888888876543
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.6e-16 Score=145.27 Aligned_cols=393 Identities=14% Similarity=0.140 Sum_probs=263.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
.+.+++..+...++ .++.+.+.|.+.+.-.|++..++.+...+..... .-...|..+.++|-..|++++|...|.
T Consensus 254 ~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 68888887766655 6888888899999999999999999999877653 445668999999999999999999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC----ChhHHHHHHHHHHHcCC
Q 011652 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP----NLPRAREIFREMVDTGC 231 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~ 231 (480)
...+..-......+..+...+.+.|+++.+...|+.+....+.+..+..+|...|...+ ..+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 88775422224455668889999999999999999998877778888888888877765 3455555555544432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC---CCCCC
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN---GILAD 304 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 304 (480)
+.|...|..+...+-.. +...++..+... ...+..+.....|.+...+...|+++.|...|+..... ...++
T Consensus 411 ~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 22444444444444332 222223333322 22233344444555555555555555555555444322 00111
Q ss_pred H------H-HHH--------------------------HHHHHHHHc-------CCHhHHHHHHHHHHhCC---------
Q 011652 305 V------A-MYN--------------------------ALIGAFCKA-------NKFKNVYRVLKDMNSKG--------- 335 (480)
Q Consensus 305 ~------~-~~~--------------------------~li~~~~~~-------~~~~~a~~~~~~~~~~~--------- 335 (480)
. . -|| ..|.+|.+. +...+|...+++....+
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 1 0 111 011122222 33444444444433211
Q ss_pred --------------------------CCCChhhHHHHHHHHH------------hCCChHHHHHHHHHHHhcCCCCHHHH
Q 011652 336 --------------------------VAPNSRTCNIILNGLI------------GRGETDEAYRVFRRMIKLCEADADTY 377 (480)
Q Consensus 336 --------------------------~~p~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (480)
..+|..+.-.|.+.|. ..+..++|+++|..+.+..|.|...-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 1123333333333332 22456788888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-GIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 456 (480)
+.+.-.++..|++.+|..+|.++.+.... ...+|..+..+|...|++..|+++|+..... .-..+..+...|.+++.+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987542 5568999999999999999999999998854 445577788999999999
Q ss_pred cCCHHHHHHHHHHHHhhhCC
Q 011652 457 EGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 457 ~g~~~~a~~~~~~~~~l~~~ 476 (480)
.|++.+|.+.+.....+.+.
T Consensus 729 ~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCCc
Confidence 99999999998888776654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=6.8e-14 Score=140.86 Aligned_cols=189 Identities=11% Similarity=0.026 Sum_probs=111.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011652 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 361 (480)
..|++++|...|+++... +|+...+..+...+.+.|+.++|...+++..+.+.. +...+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHH
Confidence 444444444444444322 222223333344445555555555555555543211 11122222223334466777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
.+++..+.. |+...|..+..++.+.|++++|...+++....... +...+..+..++...|+.++|+..+++..+.. +
T Consensus 598 ~~~~AL~l~-P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P 674 (987)
T PRK09782 598 DLTRSLNIA-PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-P 674 (987)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 766666533 34667777777777777777777777777766522 55666677777777777777777777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
-+...+..+..++...|++++|...+++..++++.
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34556667777777788888888887777776654
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.3e-14 Score=143.09 Aligned_cols=356 Identities=10% Similarity=-0.020 Sum_probs=272.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHccCC---hh
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-G-VTQNLAAFNGLLSALCKSKN---VR 183 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~---~~ 183 (480)
..+...++...++.|-+..+-+......+.-.....|+.++|.++|+..... + ...+....+-++..|.+.+. ..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4467777777777777776667777888888888999999999999988762 1 23345556678888887766 33
Q ss_pred hHHHH----------------------HHHhhc---CCCC--ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChh
Q 011652 184 KAQEI----------------------FDCMKD---RFIP--DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236 (480)
Q Consensus 184 ~a~~~----------------------~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (480)
++..+ .+.... ..++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 122222 2345 67788888888887 8899999988888765 36655
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 316 (480)
....+...+...|++++|...++++... +|+...+..+..++...|++++|...+++..+.. +.....+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4444555667899999999999998665 4445556677788899999999999999998764 223333333444455
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011652 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 396 (480)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++.....|.+...+..+..++...|++++|...
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 669999999999999986 456778899999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+++..+... -+...+..+..++...|++++|...+++..+.. |+. .+.........+..+++.|.+-+++.-.+.+
T Consensus 666 l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 666 LERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999998753 367889999999999999999999999999753 444 4444556666667777777777666555443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=132.76 Aligned_cols=391 Identities=13% Similarity=0.145 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----HHH
Q 011652 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LN----VET 133 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~ 133 (480)
++-.++..+.+.+..... +|+..++.+.+..-|+.....--.+-+.+.+.+.+.+|+..|+-....-| .+ ...
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 333334444444443333 78889988877766655545555567788899999999999987766544 33 344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc--C-----------CCCCh
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--R-----------FIPDS 200 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-----------~~~~~ 200 (480)
.+.+...+.+.|.++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|..|.. + ..|+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 556666788999999999999998875 57777666666677788999999999998864 1 12222
Q ss_pred hhHHHHH-----HHhhcCCC--hhHHHHHHHHHHHcCCCCChhh---H------------------HHHHHHHHhcCCHH
Q 011652 201 KTYSILL-----EGWGKDPN--LPRAREIFREMVDTGCNPDIVT---Y------------------GIMVDVLCKAGRVD 252 (480)
Q Consensus 201 ~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~ 252 (480)
...+..+ .-+-+.+. .++++-.--+++.--+.|+-.. | ..-..-+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222211 11111111 1111111111111112222100 0 00122356677777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHH------------------------------------HHhhccCCHHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLV------------------------------------HTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~g~~~~a~~~~~~~ 296 (480)
.|++++..+.+.+-+.-...-+.|- ......|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 7777777665543221111111110 1112346777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHH
Q 011652 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376 (480)
Q Consensus 297 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 376 (480)
......-....|| +.-.+-..|+.++|+..|-++... +..+..++..+...|....+...|++++-+....+|.|+.+
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 6542221122222 222455566777776666554432 11133444444444555555555555555444444444444
Q ss_pred HH----------------------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hh
Q 011652 377 YT----------------------------------MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL-CD 421 (480)
Q Consensus 377 ~~----------------------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~ 421 (480)
.. -|...|....-++++..+|++..- +.|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 44 444444444555555555554433 346666666555443 34
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
.|+++.|+.+++....+ ++.|...+..|++.+...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 46666666666665542 4455555555665555555
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=4.4e-13 Score=121.92 Aligned_cols=412 Identities=12% Similarity=0.064 Sum_probs=328.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011652 52 TALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNY--EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127 (480)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 127 (480)
..|+..|+.++.+....=...|...+. -+..+...+..- |. ..--.+|+.-...|.+.+-++-|..+|....+-.
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 345567777777766666666665555 233333322211 11 1234688888899999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
+.+...|......--..|..+....+|++....- +-....|......+...|++..|..++.+.-+..+.+...|..-+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 8788888888888788899999999999998863 555666777778888899999999999999887777889999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
..-..+..++.|..+|.+.... .|+...|..-++.---.++.++|.+++++..+.- +.-...|-.+...+-+.++.+
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999998864 5677777777777777899999999999988762 334566778888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
.|...|..-.+. ++..+..|-.+...=-+.|..-.|..++++..-+++. +...|...|+.-.+.|+.+.|..++.++.
T Consensus 703 ~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888776554 4445667777777778888999999999999887655 77889999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 011652 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 447 (480)
+.++.+...|..-|....+.++-......+++- ..|++....+...|-...+++.|.+.|.+....+ ..+..+|
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 999999999999888888887766665555543 2477788888888989999999999999999865 3356789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+.+.+.+.|.-++-.+++.+.....+.
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999888766543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=6.8e-13 Score=114.83 Aligned_cols=339 Identities=14% Similarity=0.156 Sum_probs=252.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 206 (480)
|.+.+++..+|.++++--..+.|.++|++......+.+..+||.+|.+-.-..+ .+++.+|.. +..||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 357889999999999999999999999999887779999999999987654333 788888877 889999999999
Q ss_pred HHHhhcCCChhH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHhhh----CCC----CccHHHH
Q 011652 207 LEGWGKDPNLPR----AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE-ALGIVKSMDS----TVC----RPTSFIY 273 (480)
Q Consensus 207 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~----~~~~~~~ 273 (480)
+++..+.|+++. |.+++.+|++-|++|...+|..+|..+++.++..+ +..++.++.. ..+ +.+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999888754 4444444432 222 2345667
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNG----ILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
...+..|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....++.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888889899998888776665321 2222 234666777888889999999999999998888999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-CH--------H----H-HHHH-------HHHHHhCC
Q 011652 347 LNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG-EL--------E----K-AFKV-------WKYMKLKR 404 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~--------~----~-a~~~-------~~~~~~~~ 404 (480)
+++..-.|.++-..++|..+.. +..-+......++..+++.. +. . + |..+ -.++....
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999888888877 44444444444444444433 11 1 1 1111 11223333
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG----IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
......+.++-.+.+.|+.++|.++|.-+...+ ..|.......+++...+.....+|...++-+..
T Consensus 520 --~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 520 --WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred --CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345567777778899999999999999986543 233344444666777778888888888887744
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.4e-13 Score=129.66 Aligned_cols=373 Identities=12% Similarity=0.087 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|.+++..+.++.+ .....|..|...|-..|+.+++...+-.....++.+...|..+.....+.|++++|.-+|.+.+
T Consensus 157 eA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45555544444433 3444555555555555555555555444444444444555555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh-----hHHHHHHHhhcCCChhHHHHHHHHHHHc-CCC
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-----TYSILLEGWGKDPNLPRAREIFREMVDT-GCN 232 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 232 (480)
+.. |++....---...|-+.|+...|..-|.++....+|... .-..+++.+...++-+.|.+.++..... +-.
T Consensus 235 ~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 443 333333333344445555555555555554443222111 1112233344444444444444444331 112
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.+...++.++..+.+...++.+......+......+|..-+..-= ...... ..+.. ...+..++..++. +.
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----~~~~~~---~~~~~-~~~~~s~~l~v~r-l~ 384 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----RRREEP---NALCE-VGKELSYDLRVIR-LM 384 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----hccccc---ccccc-CCCCCCccchhHh-Hh
Confidence 233444445555555555555544444443311111110000000 000000 00000 0001111111211 11
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCC
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 389 (480)
-++......+....+.....+....| +...|.-+..++...|++.+|+.+|..+.. ..-.+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 12233333333333344444433222 334455555555555555555555555554 122234455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHH
Q 011652 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI--------EKGIRPSGETFGKLRKLLIKEGRED 461 (480)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~ 461 (480)
+++|.+.++.+..... -+...-..|...+-+.|+.++|.+.+..+. ..+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 5555555555554321 133333444444555555555555555532 1223344444444445555555554
Q ss_pred HHH
Q 011652 462 VLK 464 (480)
Q Consensus 462 ~a~ 464 (480)
+-.
T Consensus 544 ~fi 546 (895)
T KOG2076|consen 544 EFI 546 (895)
T ss_pred HHH
Confidence 433
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=6.9e-14 Score=129.55 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
++.....+...+...|+.++|.+.+++..+ .++++... ++.+....++.+++.+..+...+... -|...+..+...
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 344444455555555555555555555444 23333211 12222233555555555555544331 133444455555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
|.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+.+++-..
T Consensus 338 ~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555542 35555555555555555555555555555443
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=6.7e-14 Score=130.37 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF--CQGGELEKAFKVWKYMKLKRFIPSM--HTFSV 414 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ 414 (480)
+...+..+...+...|+.++|.+.+++..+..+.+......++..+ ...++.+.+.+.++...+... -|. ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444444555555555555555555555543333322110111111 223445555555555444321 122 34445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555556666666666654333233455555555555666666666666555554
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=2.1e-13 Score=126.37 Aligned_cols=283 Identities=10% Similarity=0.085 Sum_probs=200.2
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH--HHHHHhhcCCChhHHH
Q 011652 144 VQKVEEAVYTFNVMQKYGVTQNLAA-FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS--ILLEGWGKDPNLPRAR 220 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 220 (480)
.|+++.|.+.+....+.+ +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777766655432 12222 323334446777777777777777653 33332222 3356677777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH-------HHHHHHHHHhhccCCHHHHHHHH
Q 011652 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-------FIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
..++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777765422 4566667777777778888888777777776543222 12333333334444556666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 011652 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+.+.+. .+.++.....+...+...|+.++|..++.+..+. .|+... .++.+....++.+++.+..+...+..|.|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 666443 2447778888899999999999999999998875 444422 23344446699999999999999988899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+..+..+.+.+.+.+++++|.+.|+.+.+.. |+...+..+...+.+.|+.++|..++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998864 8999999999999999999999999998764
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=9.9e-13 Score=124.10 Aligned_cols=409 Identities=10% Similarity=0.043 Sum_probs=279.5
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
.+..+..+-..+.+.|+ .++.++-.+... -+.|...|-.+.....+.|++++|.-.|.+..+..|++...+.--+.
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44455556666666666 455554433333 33577999999999999999999999999999999999888888899
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHccCChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcC
Q 011652 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG----LLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 213 (480)
.|-+.|+...|...|.++.....+.|..-... .+..+...++-+.|.+.++.... ....+...+++++..+.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 99999999999999999988653333333333 34556677778999999988776 5566778899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhH----------------------H----HHHHHHHhcCCHHHHHHHHHHhhhCC--
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTY----------------------G----IMVDVLCKAGRVDEALGIVKSMDSTV-- 265 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~----------------------~----~l~~~~~~~g~~~~a~~~~~~~~~~~-- 265 (480)
..++.|......+.....++|..-+ . .++-++......+....+........
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 9999999999888763222222211 1 12223344444444444555555544
Q ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHH
Q 011652 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345 (480)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 345 (480)
..-+...|..+.++|...|.+.+|+.+|..+......-+...|-.+..+|...|.++.|...++..+...+. +...--.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~ 488 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARIT 488 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhh
Confidence 333466788888899999999999999999887755556778888888999999999999999988876222 3344555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHH
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIK---------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMHT 411 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~ 411 (480)
|...+.+.|+.++|.+.+..+.. ...|...........+.+.|+.++-..+..+|...... |+..-
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k 568 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKK 568 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 66677888999999988888542 23455555566677778888888877777776653211 11111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------------------H----HHHHHHHHHHHhcCCHHHHHHH
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS---------------------G----ETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------------~----~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
-.....+-...+...+-......|...+...+ . ..+..++.++.+.|++++|..+
T Consensus 569 ~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~v 648 (895)
T KOG2076|consen 569 KRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSV 648 (895)
T ss_pred HHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11111111223445555555666666643210 0 1234556778888888888888
Q ss_pred HHHHHhh
Q 011652 467 QEKMNLL 473 (480)
Q Consensus 467 ~~~~~~l 473 (480)
...+...
T Consensus 649 v~~a~~~ 655 (895)
T KOG2076|consen 649 VFTALEA 655 (895)
T ss_pred HHHHHhh
Confidence 7776553
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.5e-13 Score=128.08 Aligned_cols=290 Identities=10% Similarity=0.039 Sum_probs=188.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-hhHHHHHHHhhcCCChhHHH
Q 011652 143 RVQKVEEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 220 (480)
..|+++.|.+.+....+.. |+ ...+-....++...|+.+.|.+.+.+..+..+.+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777776665542 33 22333445556666777777777777654322221 23333466666677777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHh---hccCCHHHHHHHHHHHH
Q 011652 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY---GVENRIEDAVDTFLEME 297 (480)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~ 297 (480)
..++.+.+.++. +...+..+...+...|++++|.+++..+.+.+..++......-..++ ...+..+...+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777765422 44556666777777777777777777777665332222111111111 22222222333444443
Q ss_pred HCCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 011652 298 KNGI---LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---CNIILNGLIGRGETDEAYRVFRRMIKLCE 371 (480)
Q Consensus 298 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 371 (480)
+... +.+...+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.++...+..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3211 1377788888889999999999999999998863 33331 12222223445778888999988888777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 372 ADA--DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 372 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777 788899999999999999999999644444458888899999999999999999999998653
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.5e-16 Score=140.78 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=90.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
.+...+.+.|++++|++++++......+| +...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555556666666666664443332112 33334444445555666666666666666554 2244445555555 566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRV 362 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 362 (480)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677776666655443 2345556666666777777777777777765432 234555666667777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
++++.+..|.|......++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|+.+|++..... +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 777777666677777777777777777777777776665542 2344566677777777777777777777777643 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
|+.+...+..++...|+.++|.++.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666667777777777777777777766543
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.2e-12 Score=110.83 Aligned_cols=388 Identities=12% Similarity=0.041 Sum_probs=291.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|..+|+.+..... .+...|...+..-.+++.+..|..++++....-|--...|...+..--..|++..|.++|++..
T Consensus 91 RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 69999999876553 6888999999999999999999999999988776455667777777788999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-CC-CCChh
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GC-NPDIV 236 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ 236 (480)
+. .|+..+|++.+..=.+-+.++.|..++++..-- .|++.+|--....=.+.|++..|..+|+...+. |- ..+..
T Consensus 169 ~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 75 799999999999999999999999999998764 489999999999999999999999999887643 10 01122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC-------------------------------------------CCCccHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDST-------------------------------------------VCRPTSFIY 273 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~ 273 (480)
.+.+....-.+...++.|.-+|.-.... .-+.|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 2333332222333444444443322211 113455566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH---HHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADV--AMYNALIG-----AF---CKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-----~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
-..++.-...|+.+...++|++.... ++|-. ..|...|- ++ ....+.+.+.++++...+. ++....||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 66777777889999999999998865 34421 11222221 11 2367888899999888874 33345566
Q ss_pred HHHHHH----HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 344 NIILNG----LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 344 ~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+--. ..++.++..|.+++..+. |.-|-..++...|..-.+.++++.+.+++++..+-+.. |..+|......-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI-G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI-GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 554443 356788999999998877 45677788888899999999999999999999987744 778888888877
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 420 CDKGIVSDSCVLLEDMIEKG-IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
...|+.+.|..+|+-+++.. +......|.+.|+.-...|.++.|..+++++.+...
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 88899999999999988653 333345688888888899999999999999887643
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.6e-16 Score=139.33 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.+.......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+. .++...+...+..+...+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 3333333444444444444444433221 22233333333 3444444444444433322 123333344444444444
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
+++++..+++.+.... .+.+...|..+...+.+.|+.++|...+++..+..+. |......++..+...|+.+++.+++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4444444444433221 1223444444444445555555555555554443211 2334444444444555555544444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
+...+..+.++..+..+..+|...|+.++|...+++...... .|+.....+..++...|+.++|.++.+++
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT---------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 444443344444444555555555555555555555444321 14444444455555555555555544443
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=8.1e-12 Score=113.88 Aligned_cols=389 Identities=10% Similarity=0.043 Sum_probs=250.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM----RTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 153 (480)
.|.++++.+.+. .+.+...|.+-...--.+|+.+....++++- ...|. .+...|..=...|-..|..-.+..+
T Consensus 424 nAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 424 NAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 477788887654 3468888888888888889998888887764 44566 7777777777777777777777777
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 154 FNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 154 ~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
....+..|+... ..+|+.-...|.+.+.++-|..+|....+-++-+...|......--..|..++...+|++....-
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~- 580 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC- 580 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence 777766665432 34666666777777777777777777776666666667666666666666777777777766542
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (480)
+-....|.....-+-..|+...|..++....+.. +.+...|-..+..-....+++.|..+|.+.... .|+...|.--
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 2244445555555666677777777776666554 335566666666666666677777666666543 3445555444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
+..---.++.++|.+++++..+. .|+ ...|..+.+.+-+.++.+.|.+.|..-.+.+|..+..|-.|...--+.|++
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 44444456666666666666554 223 234555555555566666666666555555555555565555555555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------------------------CCC
Q 011652 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-----------------------------GIR 441 (480)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------------~~~ 441 (480)
-+|..++++..-++.. +...|...|+.-.+.|+.+.|..++.++++. ...
T Consensus 736 ~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 736 VRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred hhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 6666666655554432 5555555666656666655555544444321 124
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.|+.++..+...+....+++.|+++|++..+.+..
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 56777888888888899999999999998887654
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=1.9e-12 Score=111.43 Aligned_cols=290 Identities=11% Similarity=0.073 Sum_probs=198.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHH
Q 011652 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREI 222 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (480)
.|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-..+.+..+ ...++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666666555 22334444455555666666667666666655 2344555566666666666777777766
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH-------HHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-------FIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++++.+.+.. .........++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665433 4455566666777777777777777777666544332 3455566655555556665566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHH
Q 011652 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 375 (480)
.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+ .. ..-.+.+.++...-.+..+.-.+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5443 334566677778888899999999999999888876665 22 222356777888777777777777777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
.+.+|.+.|.+.+.+.+|...|+...+.+ |+..+|..+..++.+.|+..+|.++.++....-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999777654 888999999999999999999999888877443333
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=5.4e-13 Score=116.31 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011652 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 349 (480)
..+...+...|....+..+|++++-+.... ++.|+.....+...|-+.|+-..|++.+-+-.+- ++-+..+...+...
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 333344444555555555555555544332 4456777777777788888877777776555443 34467777888888
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC-QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
|....-+++++.+|++.. .+.|+..-|..++..|. +.|++.+|..+++....+ ++-|......|++.+...|. .++
T Consensus 636 yidtqf~ekai~y~ekaa-liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~ 712 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAA-LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDA 712 (840)
T ss_pred HHhhHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhH
Confidence 888888888888888765 46799999988876655 589999999999998775 55688888888888877773 344
Q ss_pred HHHHHH
Q 011652 429 CVLLED 434 (480)
Q Consensus 429 ~~~~~~ 434 (480)
.++-.+
T Consensus 713 key~~k 718 (840)
T KOG2003|consen 713 KEYADK 718 (840)
T ss_pred HHHHHH
Confidence 444333
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.1e-11 Score=117.98 Aligned_cols=317 Identities=11% Similarity=0.041 Sum_probs=139.7
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.|.+.|..+.++++ +++-.+---.......+++..|..+|......++ .-+.....+...+++.|+.+.|+..|.+.
T Consensus 148 ~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 34455555444433 3333333333333444555555555555444443 22222223334445555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCC---hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC--
Q 011652 158 QKYGVTQNLAAFNGLLSALCKSKN---VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-- 232 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 232 (480)
.+.+ |.++.++..|...-....+ +..+..++...-...+.++.+.+.|.+.+.-.|+++.++.+...+......
T Consensus 226 lqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 226 LQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 5433 1222222222222111121 333444444443334445555555555555555555555555555432100
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.-...|-.+.++|-..|++++|..+|.+..+....-....+.-+...+...|+++.+...|+.+.+.. +.+..+...+.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG 383 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 01223444555555555555555555555443211112223344555555555555555555554431 12333444444
Q ss_pred HHHHHcC----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 011652 313 GAFCKAN----KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMIKM 383 (480)
Q Consensus 313 ~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~ 383 (480)
..|...+ ..+.|..++.+..+.- ..|...|-.+...+... ++..++..+..+.. +.++.+...|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 4443332 2344444444444332 11334444444443332 22222444444332 233445555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011652 384 FCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~ 401 (480)
+...|++++|...|....
T Consensus 462 hf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcChHHHHHHHHHHh
Confidence 555555555555555544
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=7.1e-14 Score=127.58 Aligned_cols=286 Identities=12% Similarity=0.063 Sum_probs=146.1
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH-
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIV- 258 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~- 258 (480)
..+|...|..+.....-+..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+-.+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 4455555555444333344444555556666666666666666555432 01134455554433321 1111111
Q ss_pred HHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+..+....+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 334555666666666666666666666666553211 4455555555555555666666666555543111
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+-..|-.+...|.+.++++.|+-.|+.+.+..|.+.+....+...+-+.|+.++|+++++++...+.+ |+..-..-+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 12233334445566666666666666666555555555556666666666666666666666554433 33333334444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+...+++++|+..++++.+. ++.+...+..+.+.|.+.|+.+.|..-+--+..+++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 55556666666666666552 1222334445555666666666666655555555543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-11 Score=108.15 Aligned_cols=357 Identities=11% Similarity=0.041 Sum_probs=216.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHH--HHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF--NGL 172 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 172 (480)
.|+..+-...-.+.+.|....|+..|......-|....+|..|...... ++....+.. |.+.+.... -.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchHHHHHHH
Confidence 3444444444556677888888888888877666665556555444322 112222221 222221111 123
Q ss_pred HHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcC
Q 011652 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN--PDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 249 (480)
..++....+.+++.+-.+.... +++-+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 4455555667777776666666 45555555555555666677788888888888765311 155666665533 222
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
+-.-+ -+-+.....+ +--+.|+..+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|..-++
T Consensus 312 ~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21111 1111111111 233456667777777777888888888877776432 45567777777777777888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
..++-++. |-..|-.+.++|.-.+.+.-|+-.|+++.+--|.|...|.+|..+|.+.++.++|.+.|......|-. +.
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 77776433 66777778888887788888888888777766777778888888888888888888888877766533 55
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS--GETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
..+..+...|-+.++.++|...|++.++. |...+ ......|..-+.+.+++++|...
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 67777777787778888877777766541 32212 11122244445556666555543
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.6e-13 Score=123.96 Aligned_cols=286 Identities=14% Similarity=0.093 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHhhcCCChhHHHHH
Q 011652 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREI 222 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (480)
+..+|+..|+.+.+. +..+..+...+..+|...+++++|+++|+.+.+. ...+.++|.+.+=.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567777778775554 2334466667777888888888888888877662 223556666665544221 12222
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 223 F-REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
+ +.+.+.. +-...+|..+.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 2233321 2256788888888888888888888888887764 336777888888888888888888888877653
Q ss_pred CCCHHHHH---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHH
Q 011652 302 LADVAMYN---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 302 ~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
++..|+ -+...|.+.++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++++++....+.|+..--
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 444444 4556788888888888888888876544 5667777777788888888888888888886677777766
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
..+..+...+++++|+..++++++.- +-+...|..+...|.+.|+.+.|+.-|.-+.+...++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 67777788888888888888888753 224566777788888888888888888888776544443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=5.7e-12 Score=105.30 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChh
Q 011652 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL------AAFNGLLSALCKSKNVR 183 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~ 183 (480)
.++.++|.++|-+|.+.++.+.++..+|.+.|-+.|..+.|+.+.+.+.++ ||. .+...|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 456677777777777766666666677777777777777777777776653 321 22334455556666666
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
.|+.+|..+.+...--......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 6666666666532333444555666666666666666666665554333221 112222333333444455555555
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
+..+.+ +.++..-..+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432 2222233333444444444444444444444443222233344444444444444444444444444
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.8e-12 Score=108.21 Aligned_cols=290 Identities=15% Similarity=0.140 Sum_probs=206.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC----CChhhHHHHHHHhhcCCChhH
Q 011652 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI----PDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 218 (480)
-+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..++|+++.+.+..... .-......|.+-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567889999998888754 45566777888899999999999999988876311 112345567778888899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHhhccCCHHHHHHHHH
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT----SFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
|+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999998887542 2455677788899999999999999888887764443 2345556666667788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH
Q 011652 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 374 (480)
+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+.++.+. .+..
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-~~g~ 282 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-NTGA 282 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-cCCc
Confidence 88765322 333334455677888899999999988888866555677888888888899999888888887762 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD---KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 438 (480)
..-..+.+........+.|...+.+-... +|+...+..++..-.. .|...+-+..++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44445555555555666666665554443 3888888888876543 35566677777777643
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=6.2e-11 Score=102.25 Aligned_cols=292 Identities=11% Similarity=0.003 Sum_probs=235.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 188 (480)
-.|+|.+|+++..+-.+.+......|..-+++--..|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36999999999999887776566667777888889999999999999998864366777777888889999999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI-------VTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
++++.+..+.++.+.....++|.+.|++.....++.++.+.|.--+. .+|+.+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 99999877889999999999999999999999999999998866543 35666666666556656655566665
Q ss_pred hhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh
Q 011652 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341 (480)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 341 (480)
... .+.++..-..++.-+...|+.++|.++..+..+.+..|+ ...+ -.+.+-++...-.+..+.-.+... -++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~-~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHP-EDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCC-CChh
Confidence 443 245566677888889999999999999999998877665 2222 245567777777777777665522 2557
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
.+.++...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++....-.+|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999997665 67999999999999999999999999999876543333
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.3e-10 Score=102.30 Aligned_cols=384 Identities=11% Similarity=0.095 Sum_probs=267.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
-|.++|+... ..+|+...|++.|+.-.+.+.++.|..+|++..--. |+..+|....+---+.|+...|..+|+...
T Consensus 159 gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3677774332 245788888888888888888888888888776433 677777777777777788888888887776
Q ss_pred hc-CC-CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCC--hhhHHHHHHHhhcCCChhHHHHH--------HHHH
Q 011652 159 KY-GV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD--SKTYSILLEGWGKDPNLPRAREI--------FREM 226 (480)
Q Consensus 159 ~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~ 226 (480)
+. |- ..+...+.+....=.++..++.|.-+|.-.....|.+ ...|..+...=-+.|+.....+. |+.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 53 10 1112234444444445666777777777776655544 45566665555556665444433 3444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH-H------HHHHHHHHh---hccCCHHHHHHHHHHH
Q 011652 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-F------IYSVLVHTY---GVENRIEDAVDTFLEM 296 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~------~~~~l~~~~---~~~g~~~~a~~~~~~~ 296 (480)
.+.+ +-|-.+|--.++.-...|+.+...+++++....- +|-. . .|.-+-.++ ....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4443 3366777778888888899999999999998764 4421 1 121111111 3567899999999998
Q ss_pred HHCCCCCCHHHHHHHHHHH----HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 011652 297 EKNGILADVAMYNALIGAF----CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 297 ~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
.+. ++....||.-+=-.| .++.+...|.+++..... ..|-..+|...|..-.+.++++.+..++++..+-.|.
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 873 444555665544444 467789999999988764 5788889999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF-IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+..+|......-...|+.+.|..+|.-+.+... ......|-..|..-...|.++.|..+++++++.. +...+|.+..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHH
Confidence 999999999988999999999999999887521 1123456666776678899999999999999753 3344666665
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHHHhh
Q 011652 452 KLLI-----KEG-----------REDVLKFLQEKMNLL 473 (480)
Q Consensus 452 ~~~~-----~~g-----------~~~~a~~~~~~~~~l 473 (480)
..-. ..| ....|..++++....
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 4333 333 456777777776553
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2e-11 Score=106.96 Aligned_cols=330 Identities=9% Similarity=0.014 Sum_probs=238.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh--hHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK--TYSIL 206 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l 206 (480)
.|...+......+.+.|....|++.|...... .|-.-.+|..|.... .+.+.+..+ ..+.+.+.. .---+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VVGLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----HhcCcccchHHHHHHH
Confidence 44444444555566778888888888777653 244444554444332 233333222 222222211 11224
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHhhccC
Q 011652 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC--RPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 284 (480)
..++-...+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++..-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 455566668888888888888888776655555566667778899999999999988741 125566766654433222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
...---.....+.+ -.+.|...+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+.++
T Consensus 314 kLs~LA~~v~~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22111111111111 23456777778888899999999999999987544 45678888899999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
++.+..|.|...|-.|.++|.-.+...-|+-.|++...... -|...|.+|..+|.+.++.++|++.|.+....| ..+.
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 99999999999999999999999999999999999998753 388999999999999999999999999999866 3467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
..+..+.+.+.+.++.++|...+++-.+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88999999999999999999999887663
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.9e-11 Score=104.78 Aligned_cols=386 Identities=13% Similarity=0.077 Sum_probs=238.9
Q ss_pred HHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHS-VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.|+++|+|+.... |+ +.-|......|...|+|++..+--....+.+|.-..++..-.+++-..|++++|+.=..-.
T Consensus 133 eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 133 EAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred HHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 6888888876553 45 7778888888888888888888777777776655666666666777777777765332211
Q ss_pred H-hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh-----------------------c-
Q 011652 158 Q-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG-----------------------K- 212 (480)
Q Consensus 158 ~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~- 212 (480)
- -.|+. +..+--.+=+.+-+.+ ...+.+-+..=....-|+.....+....+. .
T Consensus 210 ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 210 CILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 1 11111 1111000000000000 011111111000011122222222222110 0
Q ss_pred ----CCChhHHHHHHHHHHHcC-CCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 011652 213 ----DPNLPRAREIFREMVDTG-CNPD-----------IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 213 ----~~~~~~a~~~~~~~~~~~-~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
...+..|.+.+.+-.... ..++ ..+...-...+.-.|+.-.|..-|+..+.....++ ..|.-+
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~ 366 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKR 366 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHH
Confidence 112233333332221100 0111 11111122233446788888888888887753333 337777
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
..+|....+.++....|.+....+.. ++.+|..-.+.+.-.+++++|..-|++.+...+. +...|-.+..+..+.+.+
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKI 444 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHH
Confidence 78889999999999999998876543 5667777777788888999999999998886333 455666666677788899
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--HHHHHHHHhcCChHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMHTF--SVLINGLCDKGIVSDSC 429 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~--~~l~~~~~~~g~~~~A~ 429 (480)
++++..|++..+.+|..+..|+.....+...+++++|.+.|+..++.... .++..+ -.++. +.-.+++..|.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~ 523 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHH
Confidence 99999999999999999999999999999999999999999988765311 122222 12221 12348899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.+++++.+.+.+ ....+..+...-...|+.++|.++|++...+-
T Consensus 524 ~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 524 NLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999875433 34457888888899999999999999876654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=8.3e-11 Score=113.99 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=132.1
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhh---------cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWG---------KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+++|...|++..+..|.+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHH
Confidence 445555555555544444444444443322 223456666666666654322 4455555556666666777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|...+++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...++++.
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7777776666654 334555666666666667777777777766655322 12222223334555666777777776665
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHT 411 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~ 411 (480)
....+-+...+..+..++...|+.++|...++++....+.+....+.+...|...| ++|...++.+.+. ...|....
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG 511 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch
Confidence 54221133345555566666777777777776655544444444555555556555 3566655555432 11122122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 512 ~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 512 L--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 22334444555555444 665543
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=6.5e-11 Score=114.73 Aligned_cols=268 Identities=10% Similarity=0.035 Sum_probs=158.1
Q ss_pred CCCCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------ccCChhhHHHHHHH
Q 011652 126 KRMLNVETFCIIMRKYAR-----VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC---------KSKNVRKAQEIFDC 191 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~ 191 (480)
..+.+.+.|...+++-.. .+..++|+++|++..+.. |.+...|..+..++. ..+++++|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 333555555555554322 123567777777777653 334445555544433 22346777777777
Q ss_pred hhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHH
Q 011652 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271 (480)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (480)
..+..+.+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.... +..
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 77766667777777777777777888888888777765422 3556666777777778888888888777766422 222
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHH
Q 011652 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGL 350 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 350 (480)
.+..++..+...|++++|...+++..+...+.+...+..+..++...|+.++|...+.++... .|+ ....+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 233334445556777888887777765432223445566666777788888888887776554 233 23334444455
Q ss_pred HhCCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 351 IGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
...| +.|...++.+.+. ..+....+ +-..|.-.|+.+.+... +++.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 5555 4666666666552 11221222 33444455666555555 666654
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=3.3e-10 Score=106.10 Aligned_cols=293 Identities=14% Similarity=0.172 Sum_probs=180.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-- 179 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 179 (480)
.....+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567888999999999988655544556677788889999999999999999999986 55555666666665222
Q ss_pred ---CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 180 ---KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP-RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 180 ---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
.+.+....+++++.... |.......+.-.+.....+. .+..++..+...|++ .+|+.+-..|....+..-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25677788888887655 33333333322222222332 455566677777765 35666666666555555555
Q ss_pred HHHHHhhhC----C----------CCccH--HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 011652 256 GIVKSMDST----V----------CRPTS--FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-VAMYNALIGAFCKA 318 (480)
Q Consensus 256 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 318 (480)
+++...... + -+|+. .++..+...|...|++++|++.+++.+++. |+ +..|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 555554321 1 12333 233445566666777777777777766652 33 55666666667777
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHH------H--HHHHHHHHHhcCC
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADAD------T--YTMMIKMFCQGGE 389 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~------~--~~~l~~~~~~~g~ 389 (480)
|++.+|...++.....+.. |...=+..+..+.+.|+.++|.+++....+ +..|... . ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777776665443 555555566666677777777777666655 2122111 1 1344566666677
Q ss_pred HHHHHHHHHHHHh
Q 011652 390 LEKAFKVWKYMKL 402 (480)
Q Consensus 390 ~~~a~~~~~~~~~ 402 (480)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666554
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1e-10 Score=101.08 Aligned_cols=199 Identities=15% Similarity=0.063 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011652 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 350 (480)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344455555555666666666665555432 123445555555666666666666666666554322 334455555566
Q ss_pred HhCCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 351 IGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
...|++++|.+.++.+... .+.....+..+..++...|++++|.+.+++...... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666551 223344556666777777777777777777766532 2455666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 429 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...++++.+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777777665 2344555656667777777777777777766544
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=4.7e-11 Score=103.15 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45555566666666666666666666665555555556666666666666666666666665543 33444555555555
Q ss_pred HccCChhhHHHHHHHhhcC--CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
...|++++|.+.+++.... .+.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666655431 1112233444444444555555555555544433211 223344444444444444444
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
...+++.... .+.+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 122233333333444444444444444333
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-09 Score=98.39 Aligned_cols=287 Identities=11% Similarity=0.031 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
..++.....-..-+...+++.+..++++.+.+..+++...+..-|.++...|+..+-..+=.++.+.- +-...+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 44455555556666777888888888888888878888888888888888888888777777777653 33577888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
--|...|+..+|.+.|.+....+ +.-...|..+..+|+-.|..|+|...+....+.= +-..--+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 77777888888888888776654 2335567788888888888888888877765431 001111222334577788888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------CEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
.|.+.|.+.....+ -|+...+-+.-.....+.+.+|..+|+..... .+--..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 88888888876532 26666666666666778888888888877641 11134467888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.+++......+ +..++..+.-.|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 88888876533 778888888888888888888888888874 56777766666654443
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=8.9e-10 Score=103.27 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=143.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC---
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD--- 213 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 213 (480)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+....|.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 344556667777777776554432 2333444555566666677777777777776666565666666666655222
Q ss_pred --CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH
Q 011652 214 --PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD-EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 214 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
.+.+...++|+++...- |.......+.-.+.....+. .+..++..+...|+|+ +|+.+-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 23455566666655432 33333322221222211222 3334444455555322 3444444444444444444
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhC
Q 011652 291 DTFLEMEKN----G----------ILADV--AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGR 353 (480)
Q Consensus 291 ~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 353 (480)
+++...... + -+|+. .++..+...|...|++++|...+++..+. .|+ +..|..-.+.+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 444443221 0 11222 23334445555556666666666655554 232 34455555555556
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCh
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH------TF--SVLINGLCDKGIV 425 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~ 425 (480)
|++.+|.+.++.+......|...-+-.+..+.++|++++|.+++......+..|-.. +| .....+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 666666666666555445555555555555556666666666655555444322211 11 1223445555555
Q ss_pred HHHHHHHHHH
Q 011652 426 SDSCVLLEDM 435 (480)
Q Consensus 426 ~~A~~~~~~~ 435 (480)
..|++-|...
T Consensus 322 ~~ALk~~~~v 331 (517)
T PF12569_consen 322 GLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=1.8e-11 Score=115.34 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.- ..+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555666666666666666666666666666 6666654 33445556666666666666655544
Q ss_pred CCChhhHHHHHHHHHhcCCHHH
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.|...||..+..+|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 4566666666666666666544
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.2e-08 Score=93.70 Aligned_cols=381 Identities=13% Similarity=0.096 Sum_probs=203.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
+|...-....+... .+.+.|+.+.-.+...+++++|+..|......++.|...|.-+.-.-++.|+++........+.
T Consensus 59 ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 59 EAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred HHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45444444433222 4556666666666666677777777777766666666666666666666666666666665555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC--CCChhhHHHHH------HHhhcCCChhHHHHHHHHHHHcC
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILL------EGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
+.. +.....|..+..++.-.|+...|..+++...+.. .|+...|.... ....+.|..+.|.+.+..-...
T Consensus 137 ql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 137 QLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred Hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 532 2233445566666666677777777776666522 34444443322 2334456666666655544322
Q ss_pred CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH-HHHHHHhhccCCHHHHH-HHHHHHHHCCCCCCHHH
Q 011652 231 CNPDIVT-YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY-SVLVHTYGVENRIEDAV-DTFLEMEKNGILADVAM 307 (480)
Q Consensus 231 ~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~ 307 (480)
+ .|... -.+-...+.+.+++++|..++..+... .||...| ..+..++.+-.+.-++. .+|....+.- |....
T Consensus 215 i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~ 289 (700)
T KOG1156|consen 215 I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHEC 289 (700)
T ss_pred H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--ccccc
Confidence 1 12222 223345566667777777777777665 3443333 33344443222222333 4444444321 11111
Q ss_pred HHHHHHHHHH-cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh---c------------CC
Q 011652 308 YNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---L------------CE 371 (480)
Q Consensus 308 ~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------------~~ 371 (480)
-..+-..... ..-.+....++..+.+.|+++- +..+...|-.....+-..++.-.+.. + -+
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0000001111 1112233344555555555432 23333322222211111122211111 1 14
Q ss_pred CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011652 372 ADADTY--TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 372 ~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 448 (480)
|+...| ..+++.|-+.|+++.|...++...++- |+. ..|..-.+.+.+.|+.++|..++++..+.+ .||...-.
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INs 443 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINS 443 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHH
Confidence 555544 456777778888888888888887753 443 455555677888888888888888888765 34555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 449 KLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.-++...++.+.++|.++.-+..+-+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcc
Confidence 67777788888888888877665543
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=2.6e-10 Score=105.56 Aligned_cols=240 Identities=17% Similarity=0.166 Sum_probs=166.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCccHH-HHHHHHHHhhccCCHHHHHHHHHHHHHC-----CCC
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDST-----V-CRPTSF-IYSVLVHTYGVENRIEDAVDTFLEMEKN-----GIL 302 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~ 302 (480)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555777888888888888887776543 1 122222 2334677888888888888888887532 211
Q ss_pred -C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCC-CCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhc----
Q 011652 303 -A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSK-----GVA-PNS-RTCNIILNGLIGRGETDEAYRVFRRMIKL---- 369 (480)
Q Consensus 303 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 369 (480)
| -..+++.|..+|.+.|++++|...+++..+- |.. |.. ..++.+...+...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2446677777888999988888877766442 211 121 23566677788889999999988887761
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 011652 370 CEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RF--IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIE- 437 (480)
Q Consensus 370 ~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 437 (480)
..+ -..+++.|...|...|++++|.++++++... +. .+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2467889999999999999999999987642 11 11 245677888889899999999988887653
Q ss_pred ---cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 438 ---KGI-RPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 438 ---~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.|. .|+ ..+|..|...|.+.|+++.|.++.+.+...+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 232 222 3468889999999999999999998887544
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.6e-09 Score=93.14 Aligned_cols=357 Identities=12% Similarity=0.048 Sum_probs=233.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccC
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSK 180 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 180 (480)
...+-+.++|++++|++.|.......+..+..|.....+|...|+++++++--...++.+ |+ +..+.--.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 345667889999999999999988776557788889999999999999999888887753 43 445555566777778
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH--------HHH-cC--CCCChhhHHHHHHHHHh--
Q 011652 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE--------MVD-TG--CNPDIVTYGIMVDVLCK-- 247 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~-~~--~~~~~~~~~~l~~~~~~-- 247 (480)
++++|+.=..- ..+...+....-...+.+++.+ -.+ .+ +-|+.....+....+..
T Consensus 198 ~~~eal~D~tv------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 198 KFDEALFDVTV------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred cHHHHHHhhhH------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 87776532221 1122222222222222222221 111 11 22332222222222110
Q ss_pred -----------------------cC---CHHHHHHHHHHhhhC-CCCc--c---------HHHHHHHHHHhhccCCHHHH
Q 011652 248 -----------------------AG---RVDEALGIVKSMDST-VCRP--T---------SFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 248 -----------------------~g---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~l~~~~~~~g~~~~a 289 (480)
.+ .+..|...+.+-... -..+ + ..+...-...+.-.|+.-.|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 01 222222222221110 0011 1 11222222334556888889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
..-|+..++....++ ..|--+...|....+.++....|......+.. ++.+|..-.+.+.-.+++++|..=|++....
T Consensus 346 ~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999888754433 33666677889999999999999999887654 6777887777788888999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-----IRPSG 444 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~ 444 (480)
.+.+...|..+..+..+.+.++++...|++.+++ ++--+..|+.....+...++++.|.+.|...++.. +..+.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 7788888888888888999999999999999876 44467899999999999999999999999988642 11222
Q ss_pred HHH--HHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 445 ETF--GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 445 ~~~--~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+ ..++-.-. .+++.+|..++++..+++++
T Consensus 503 ~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 503 APLVHKALLVLQW-KEDINQAENLLRKAIELDPK 535 (606)
T ss_pred hhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch
Confidence 222 22332223 38899999999999888764
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.6e-11 Score=100.72 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=118.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
+.+.++|.+.|.+.+|.+.++..++. .|-..||..+-+.|.+..++..|+.++.+-.+. ++-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555555555555555555555443 234445555555555555555555555555443 122222223344555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
++.++|.++|+...+.. +.++.....+...|.-.++.+.|+..++++.+.|.. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555432 223444444444555555555566666555555554 4555555555555555555555555
Q ss_pred HHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 364 RRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 364 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+.... ...-..+|..+....+..|++.-|.+.|+-...++.. +...++.|.-.-.+.|+.++|..+++.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555541 1122344555555555556666666666555544422 445555555555555666666666555543
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=5.1e-08 Score=91.45 Aligned_cols=131 Identities=17% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
|......+.+.+..++|...+.+..+..+..+..|......+...|..++|.+.|......+.. ++....++...+.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh
Confidence 4455667788899999999999999888889999999999999999999999999998876532 567888899999999
Q ss_pred CChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 423 GIVSDSCV--LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 423 g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|....++..
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 98888887 999999877 45789999999999999999999999999988864
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-09 Score=98.51 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=230.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+......-...+-..+++.+..++.+.+.+.. |+....+..-|.++...|+..+-..+=.++....|..+.+|-.+.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45556666677778899999999999998875 77888888888899999999888888888888889999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
|.-.|+..+|.+.|.+....... =...|......|.-.|..++|...+...-+.- +-..--+--+.--|.+.+.++.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999998754211 24578888899999999999999887765531 11111122344567788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----G--VAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
.+.|.+.... .+.|+..++-+.-.....+.+.+|..+|+..+.. + ......+++.|..+|.+.+..++|+..+
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999998865 3447778888888788889999999999887732 1 1124456888999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
+......+.+..++.++.-.|...|+++.|.+.|.+..-. .|+..+-..++..+.
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764 478777666666443
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.2e-10 Score=97.76 Aligned_cols=231 Identities=12% Similarity=0.048 Sum_probs=196.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM-YNALIGAFCK 317 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~ 317 (480)
+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-+.|.+..++..|+.++.+-.+. .|...| ..-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56889999999999999999998876 677788999999999999999999999998875 344444 4556678888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
.++.++|.++++...+.... +......+...|.-.++++-|+.+++++.+....++..|+.+.-+|...++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999887433 66777777888889999999999999999977789999999999999999999999999
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 398 KYMKLKRFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 398 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++....--.|+ ...|..+.....-.|++.-|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|+.+++......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 98886544444 3678888888889999999999999998765 34567888888888999999999999998877654
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=5.9e-08 Score=89.15 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..|.+|...|++.|.++.|.++|++....
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 36788999999999999999999877653
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.2e-08 Score=86.95 Aligned_cols=380 Identities=9% Similarity=0.030 Sum_probs=229.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
-|+.+++..... +-+-...+-.++...+.+.|++++|...+..+.+..-++.+.+..|.-.+.-.|.+.+|..+-....
T Consensus 40 GAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 40 GAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred hHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 577777765422 1111223444466777899999999999999988777888888888888888999999998876643
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (480)
+ ++-.-..++....+.++-++-..+.+.+.. ...---.|.......-.+++|+++|.+....+ |+-...
T Consensus 119 k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 119 K-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred C-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 3 334445566666777887777776666654 22333344444445567899999999998753 444445
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH--------------CC---
Q 011652 239 GIM-VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK--------------NG--- 300 (480)
Q Consensus 239 ~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------~~--- 300 (480)
|.. .-+|.+..-++-+.+++....+. ++.++...+..+....+.=.-..|.+-.+.+.. ++
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 543 34677888888888888877765 244444555444333322111122222222211 11
Q ss_pred ---------CCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-----------------
Q 011652 301 ---------ILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG----------------- 349 (480)
Q Consensus 301 ---------~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----------------- 349 (480)
+-|. +..--.++--|.+.+++.+|..+.+++... .|-......++.+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 0010 111222334567788888888877665432 2222222222211
Q ss_pred ------------------------HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 350 ------------------------LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 350 ------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
+.-..++++.+..++.+..-...|...--.+.++++..|++.+|+++|-.+..-.+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 11112233333333333332222222223577888888999999999988776555
Q ss_pred CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 406 IPSMHTFSV-LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 406 ~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+ |..+|.. +.++|.+.|.++-|+.++-++-. ..+..+ +..+..-|.+.+.+--|-+.+..+..+++.|
T Consensus 425 k-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 425 K-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred h-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 5 5566655 55688899999999887765532 222223 3445677888999888888999998888876
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=4.4e-07 Score=83.59 Aligned_cols=384 Identities=13% Similarity=0.143 Sum_probs=200.0
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 81 FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+..|+.+...-+.......|...+......+-++.+..++++..+- ++..-.-.|..++..+++++|-+.+......
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 3444444333333333445555555555556666666666665544 3333455566666677777776666655322
Q ss_pred ------CCCCCHHHHHHHHHHHHccCChh---hHHHHHHHhhcCCCCC-hhhHHHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 161 ------GVTQNLAAFNGLLSALCKSKNVR---KAQEIFDCMKDRFIPD-SKTYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 161 ------~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
..+.+...|..+-...++..+.- ....++..+...++.. ...|+.|.+.|.+.|.+++|.++|++....
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 11334444555544444433322 2333344433332211 245667777777777777777777665542
Q ss_pred CCCChhhHHHHHHHHHh---------------------------------------------------------------
Q 011652 231 CNPDIVTYGIMVDVLCK--------------------------------------------------------------- 247 (480)
Q Consensus 231 ~~~~~~~~~~l~~~~~~--------------------------------------------------------------- 247 (480)
..+..-|..+.++|+.
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV 356 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV 356 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh
Confidence 1122222222222211
Q ss_pred ---cCCHHHHHHHHHHhhhCCCCc------cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 011652 248 ---AGRVDEALGIVKSMDSTVCRP------TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD---VAMYNALIGAF 315 (480)
Q Consensus 248 ---~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 315 (480)
.|+..+....+.+..+.- .| ....|..+.+.|-..|+++.|..+|++..+-..+.- ..+|......=
T Consensus 357 ~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 123333333343333221 11 123456667777777777777777777765433211 23444444555
Q ss_pred HHcCCHhHHHHHHHHHHhCCCC----------C-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHH
Q 011652 316 CKANKFKNVYRVLKDMNSKGVA----------P-------NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
.++.+++.|++++++....... | +...|...+...-..|-++....+++++...--.++....
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~ 515 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII 515 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5666777777777665432111 1 1223444445455566777777777777763334444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHH--HHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDK---GIVSDSCVLLEDMIEKGIRPSGETFG--KLRK 452 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~ 452 (480)
.....+-...-++++.+++++-+..-..|++ ..|+..+.-+.+. ...+.|..+|+++++ |.+|...-+. ....
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 4444555566677777777765554333444 4566666555432 357788888888887 5555443222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011652 453 LLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~ 471 (480)
.-.+.|....|..++++..
T Consensus 595 lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3334566777777777654
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.4e-08 Score=86.82 Aligned_cols=282 Identities=11% Similarity=-0.015 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011652 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
|.+.|-.+.....++.|+.....+...+...|+.++|+..|++....++-+........-.+.+.|+.++...+...+..
T Consensus 215 a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~ 294 (564)
T KOG1174|consen 215 ASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA 294 (564)
T ss_pred hhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence 33333333333344445555555555555555555555555555444443333333333333444444444444444433
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 160 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
.. .-+...|-.-+......++++.|+.+-++..+..+.+...|-.-...+...++.++|.-.|+...... +-+...|.
T Consensus 295 ~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~ 372 (564)
T KOG1174|consen 295 KV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYR 372 (564)
T ss_pred hh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHH
Confidence 21 12222222223333334445555555544444333344444444444445555555555555444321 11344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHH-HHhhcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV-HTYGVE-NRIEDAVDTFLEMEKNGILAD-VAMYNALIGAFC 316 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 316 (480)
-++..|...|++.+|.-+-....+. ++.+..+.+.+. ..+... .--++|.++++.-.+. .|+ ....+.+...+.
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHH
Confidence 5555555555555544444333222 122222322221 111111 1123344444443322 222 222333334444
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
..|..+.+..+++..... .||...-+.+...+...+.+.+|++.|..+..
T Consensus 450 ~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444445555544444432 34444444444444444444444444444443
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=9.4e-10 Score=104.12 Aligned_cols=338 Identities=14% Similarity=0.128 Sum_probs=209.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH
Q 011652 89 KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 89 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
+..|..|+..+|..+|.-|+..|+.+.|- +|..|..+.. .+...|+.++.+....++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 45588899999999999999999999998 9999988877 78888999999988888877765 68889
Q ss_pred HHHHHHHHHHccCChhh---HHHHHHHhhcCCCC----ChhhHHH---------------HHHHhhcCCChhHHHHHHHH
Q 011652 168 AFNGLLSALCKSKNVRK---AQEIFDCMKDRFIP----DSKTYSI---------------LLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~----~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~ 225 (480)
+|..|..+|...||+.. .++.++.+...+.+ ....|-. .+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999554 33333333221111 1111111 11112222333333333333
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011652 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
+..... + .++...++-+.... .-..++........-.|++.+|..++++-.-.|+.+.|..++.+|.+.|.+.+.
T Consensus 165 ~Pvsa~--~-~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 165 VPVSAW--N-APFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CCcccc--c-chHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 321100 0 01111233333322 223333333332222689999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
+-|..++-+ .++..-++.++.-|.+.|+.|+..|+..-+..+..+|....+... .+....+++-+..-+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~--------sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG--------SQLAHGFTAAVRSAA 308 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc--------cchhhhhhHHHHHHH
Confidence 888887755 788888999999999999999999999988888876553222221 222222233233222
Q ss_pred hcCCHHHHHHHHH------------HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC-CHHHHHHH
Q 011652 386 QGGELEKAFKVWK------------YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRP-SGETFGKL 450 (480)
Q Consensus 386 ~~g~~~~a~~~~~------------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l 450 (480)
-.| ..|.+.++ +..-.|+.....+|.... -...+|+-++..++-..+..-. +.+ +...+..+
T Consensus 309 ~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 309 CRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred hcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 233 22222222 212224433334444333 3445788888888888776322 222 23446565
Q ss_pred HHHHHhc
Q 011652 451 RKLLIKE 457 (480)
Q Consensus 451 ~~~~~~~ 457 (480)
+.-|++.
T Consensus 386 lrqyFrr 392 (1088)
T KOG4318|consen 386 LRQYFRR 392 (1088)
T ss_pred HHHHHHH
Confidence 6666553
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.1e-07 Score=79.38 Aligned_cols=301 Identities=11% Similarity=0.074 Sum_probs=208.1
Q ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 133 TFCIIMRKYA--RVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 133 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+....+.+++ -.++...|...+-.+... -++-++.....+..++...|+..+|+..|++...-.+.+........-.
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 3344444443 345555555555444332 3566777788888889999999999999988876545455555555556
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
+.+.|+++....+...+.... .-+...|-.-........+++.|+.+-++.++.. +.+...+..-...+...|+.++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 667888888777777776432 1233344444445556678888888888887764 44555565556777888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH-HHH-HhCCChHHHHHHHHHHH
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL-NGL-IGRGETDEAYRVFRRMI 367 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~ 367 (480)
.-.|+...... +-+...|.-++..|...|.+.+|..+-+...+. ++.+..+...+. ..| -....-++|.++++...
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 98888877652 236788999999999999998888777665543 222444444331 222 22234577888888877
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
+..|.-....+.+...+...|..+.+..+++..... .||....+.|.+.+...+.+++|...|..++..+
T Consensus 432 ~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 432 KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 765666677788888888899999999999887764 3788888899999999999999999998887643
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=1.2e-07 Score=87.27 Aligned_cols=400 Identities=12% Similarity=0.107 Sum_probs=259.6
Q ss_pred CCHHHHHHHHHHHhhCcH---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHH
Q 011652 61 VSPEIVEDVLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 137 (480)
+-+.+.-+|+..+.+... +|++-|..+..... .|...|.-+.-.-.+.|+++.....-....+..+.....|..+
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 334445566666655554 89999988876543 6788888877777888999988888888888777778889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH------HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYG-VTQNLAAFNGLL------SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
..++.-.|+...|..+++...+.. ..|+...+.... ......|..++|.+.+......+......-.+-...+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 999999999999999999987754 246665554333 3345678888888888776654444444455667788
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHH-HHHHHhhhCCCCccHHHHHHH-HHHhhccCCHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC-KAGRVDEAL-GIVKSMDSTVCRPTSFIYSVL-VHTYGVENRIE 287 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~ 287 (480)
.+.++.++|..++..++.. .||...|...+..+. +..+.-++. .+|....+. .|....-..+ +.......-.+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHH
Confidence 8999999999999999986 477766666554443 333333443 556555443 1111111111 11111122233
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CC----------CCCChh--hHHHHHHHHH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS----KG----------VAPNSR--TCNIILNGLI 351 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~--~~~~l~~~~~ 351 (480)
....++..+.+.|+++- +..+...|-.-...+-..++...+.. .| -+|... ++..++..+-
T Consensus 306 ~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 44556666677776543 33343333322222211222222211 11 134443 3445677788
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 431 (480)
..|+++.|..+++.+....|.-+..|..-.+.+...|.+++|..++++..+.+. ||...-..-..-..++++.++|.++
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHH
Confidence 899999999999998876666667777778999999999999999999988763 3554444566667788999999999
Q ss_pred HHHHHHcCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 011652 432 LEDMIEKGIRPSGE--------TFGKL--RKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 432 ~~~~~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.....+.|. +.. .|-.+ ..+|.+.|++..|.+=+..+.+
T Consensus 462 ~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 462 LSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 988887664 221 12111 4577788887777665555443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=8.8e-09 Score=82.61 Aligned_cols=194 Identities=14% Similarity=0.036 Sum_probs=92.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
+.-.|...|++..|..-+++..+... .+..++..+...|.+.|..+.|.+-|++....... +..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 33444455555555555555444321 13334444444555555555555555555443222 33344444444445555
Q ss_pred hHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 356 TDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 356 ~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
+++|...|++... ....-..+|..+.-+..+.|+.+.|...|++..+.+.. ...+...+.....+.|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555444 22233344555555555555555555555555544322 23344444445555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 434 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.....+. ++...+...|+.-.+.|+-+.+.++-..+.++
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5544432 45555544555555555555555554444443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=8.2e-09 Score=82.78 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+...+.-.|...|++..|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|+...+.. +.+-.+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344456677788888888888888888888778888888888888888888888888877764 4566777777778888
Q ss_pred cCChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
.|.+++|...|++... .......+|..+.-+..+.|+++.|...|++.++.... ...+...+.+...+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 8888888888887766 33445567777777777888888888888877765422 34456666777777778888777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.++.....+. ++....-..|+.-...|+-+.+-+.=.++..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777776653 6666666666666677777766665555544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=8.3e-08 Score=88.63 Aligned_cols=199 Identities=13% Similarity=-0.032 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH--
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LN-VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-- 171 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 171 (480)
...|..+...+...|+.+.+.+.+....+..+ .+ ..........+...|++++|.+.++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44555555666666777776666666554444 22 2222233344556678888888887776653 334444432
Q ss_pred -HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011652 172 -LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 172 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 250 (480)
+.......+....+.+.+.......+........+...+...|++++|...+++..+... .+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 111112234444455544442222233334444555666777777777777777776532 234555666667777777
Q ss_pred HHHHHHHHHHhhhCCCC-ccH--HHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 251 VDEALGIVKSMDSTVCR-PTS--FIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
+++|...+++....... ++. ..|..+...+...|++++|..++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777766654211 121 234455666667777777777777664
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.6e-11 Score=76.31 Aligned_cols=49 Identities=41% Similarity=0.806 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=7.8e-09 Score=95.88 Aligned_cols=238 Identities=14% Similarity=0.146 Sum_probs=171.8
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-----C-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDT-----G-CNPDIVT-YGIMVDVLCKAGRVDEALGIVKSMDST-----V- 265 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 265 (480)
-..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666888888888888888888876643 2 1223222 234667788889999988888887542 1
Q ss_pred -CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---
Q 011652 266 -CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-----GIL-AD-VAMYNALIGAFCKANKFKNVYRVLKDMNSK--- 334 (480)
Q Consensus 266 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 334 (480)
.+.-..+++.|..+|.+.|++++|...++...+- |.. |. ...++.+...++..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456777888899999999888877775421 111 12 234566777888899999999998876542
Q ss_pred CCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 335 GVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKL--------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 335 ~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
-+.++ ..+++.+...|...|++++|+++++.+... ..-....++.|...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 357889999999999999999999998761 222346788899999999999999999987543
Q ss_pred ----CCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 403 ----KRFI-P-SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 403 ----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.|.. | ...+|..|...|...|++++|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3322 2 34689999999999999999999988876
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.7e-11 Score=76.10 Aligned_cols=50 Identities=32% Similarity=0.626 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.6e-08 Score=89.86 Aligned_cols=226 Identities=8% Similarity=-0.040 Sum_probs=135.0
Q ss_pred CChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH
Q 011652 214 PNLPRAREIFREMVDTG-CNPD--IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
+..+.++.-+.+++... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 1121 3446666667777788888887777777664 445677777777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 011652 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
..|+...+.... +..++..+...+...|++++|...++...+.. |+..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888877765322 45566667777777788888888888777653 332211111222344567788888886655433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK---RF--IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
.++...+ . ......|+...+ +.++.+.+. .+ .| ....|..+...+.+.|++++|...|++..+.++ |+.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chH
Confidence 3332222 2 222334554443 234433321 10 01 235677888888888888888888888887542 344
Q ss_pred HHHH
Q 011652 445 ETFG 448 (480)
Q Consensus 445 ~~~~ 448 (480)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1e-08 Score=85.21 Aligned_cols=328 Identities=12% Similarity=0.142 Sum_probs=216.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-LLSALC 177 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 177 (480)
-+.+.+..+.+..+++.|++++..-.++.+.+......+...|....++..|-..++.+-.. -|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 35566666778889999999999988888878888999999999999999999999998764 455444433 245566
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhh--HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKT--YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+.+.+..|+.+...|... ++... ...-.......+++..+..++++....| +..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 788899999999888753 22222 2222223345788888888888876433 4444555444556889999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC-------------H---------------HH
Q 011652 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-------------V---------------AM 307 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~---------------~~ 307 (480)
+-|+...+.+--.+...|+..+ ++.+.|+++.|++...+++++|++.. + ..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 9999887765455556676554 45567899999999999998887631 1 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
+|.-...+.+.|+++.|.+-+.+|..+. ...|++|...+.-.- ..+++-+..+-+.-+....|-...||..++-.||+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 2222223566788888888887775432 344666665544322 23445555555555555556667888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 011652 387 GGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLC-DKGIVSDSCVLLEDMI 436 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 436 (480)
..-++-|..++.+-...-.. .+...|+ ++.++. -.-..++|.+-++.+.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888887654322111 1333343 333333 3345667766665554
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=4.4e-08 Score=81.54 Aligned_cols=398 Identities=9% Similarity=0.011 Sum_probs=254.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH
Q 011652 57 SGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134 (480)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (480)
.|..+....+..++..+.++.+ .|+++...-.+..+ .+....+.+...|-+..++..|-+.++++....| ...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHH
Confidence 3555555667777777776666 67887766544433 4778888888899999999999999999987765 22222
Q ss_pred H-HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 011652 135 C-IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL--SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 135 ~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
. --...+.+.+.+.+|+.+...|.+. +....-..-+ ......+++..+..++++.... .+..+.+...-...
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gClly 155 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheee
Confidence 2 2345667889999999999888763 3322211112 2234678999999999998742 25556666666778
Q ss_pred cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-------------cH--------
Q 011652 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP-------------TS-------- 270 (480)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~-------- 270 (480)
+.|+++.|.+-|+...+-|--.....|+..+- ..+.|+++.|++...++...|++. |.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 89999999999999887654445677887764 456799999999999998876431 11
Q ss_pred -------HHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh
Q 011652 271 -------FIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342 (480)
Q Consensus 271 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 342 (480)
..+|.-...+.+.|+++.|.+.+-+|.-+ ....|+.|...+.-. -..+++.+..+-+.-+.+.++- ...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHH
Confidence 12233334456789999999999888532 234566776655422 2245666777777777776553 4678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFC-QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
|..++-.|++..-++.|-.++.+-.. -.-.+...|+ ++.++. ..-..++|.+-+..+...- ....-...+..-
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQ 388 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 99999999999999999888876432 1123344444 334444 3457788887776654320 111111122211
Q ss_pred -HhcCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 420 -CDKGIVSDS----CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 420 -~~~g~~~~A----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.+..+-+++ ++-+++.++. -..+..+-...+.+..++..++++|++-.+.
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 122222222 2223332221 1223334455677788888898888876543
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.9e-08 Score=89.44 Aligned_cols=93 Identities=15% Similarity=-0.035 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|...|++..+..+.+..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3333334444444444444444444332 223334444444444444444444444444333233333444444444444
Q ss_pred CChhHHHHHHHHHH
Q 011652 214 PNLPRAREIFREMV 227 (480)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (480)
|++++|.+.|++..
T Consensus 146 g~~~eA~~~~~~al 159 (296)
T PRK11189 146 GRYELAQDDLLAFY 159 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=2.5e-07 Score=85.50 Aligned_cols=305 Identities=10% Similarity=-0.025 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHH--
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNL-AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI-- 205 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 205 (480)
....|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++..+..|.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 84 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHL 84 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhH
Confidence 344566666667777777777666666544321 1222 222223345567888999998888887765666655552
Q ss_pred -HHHHhhcCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 206 -LLEGWGKDPNLPRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 206 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
........+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..... +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22222224445555555444 1112222 2333455567788888888988888888764 44566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhCCCh
Q 011652 284 NRIEDAVDTFLEMEKNGI-LADV--AMYNALIGAFCKANKFKNVYRVLKDMNSKGV-APNSRTC-N--IILNGLIGRGET 356 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~ 356 (480)
|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776432 1222 2345667778888888888888888754322 1111111 1 222233333433
Q ss_pred HHHHHH--HHHHH-hcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcC
Q 011652 357 DEAYRV--FRRMI-KLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP--------SMHTFSVLINGLCDKG 423 (480)
Q Consensus 357 ~~a~~~--~~~~~-~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g 423 (480)
..+.++ +.... ...+ ...........++...|+.+.|..+++.+......+ ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333332 11111 1111 111222345666667777888888877765422110 1111222223345667
Q ss_pred ChHHHHHHHHHHHH
Q 011652 424 IVSDSCVLLEDMIE 437 (480)
Q Consensus 424 ~~~~A~~~~~~~~~ 437 (480)
+.++|.+.+.+...
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.4e-06 Score=79.58 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA--RVQKVEEAVYTFNV 156 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~ 156 (480)
+|.+.-+.+.... +.+...+..-+-++.+.++|++|+.+.+.-.... ....| .+=.+|| +.++.++|+..++.
T Consensus 30 ~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~-~fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 30 EAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSF-FFEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred HHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchh-hHHHHHHHHHcccHHHHHHHHhc
Confidence 5666666665432 3456666666667777777777775554322111 11111 0233333 56777777777762
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
.. +.+..+...-...+.+.|++++|..+|+.+.+
T Consensus 105 ~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 105 LD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred cc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 12233444555666777788888888877754
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.2e-07 Score=83.83 Aligned_cols=366 Identities=15% Similarity=0.110 Sum_probs=227.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|...|.......+ +|-..|+.-..+|+..|++++|.+=-.+.++..|.-+..|.-...++.-.|++++|+.-|.+-+
T Consensus 20 ~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 20 TAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 78999977766654 5889999999999999999999998888888888778889999999999999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHH------HHhhc----CCCCChhhHHHHHHHhhcCC-------ChhHHHH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKD----RFIPDSKTYSILLEGWGKDP-------NLPRARE 221 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------~~~~~----~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 221 (480)
+.. +.+...++.+..++... . .+.+.| ..+.. ........|..++..+-+.. +.+...+
T Consensus 98 ~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 98 EKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred hcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 865 55666777888777211 0 011111 11110 00011122333332221110 0111111
Q ss_pred HHHHHH--------HcC-------CCC------------C----------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 222 IFREMV--------DTG-------CNP------------D----------IVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 222 ~~~~~~--------~~~-------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
..-.+. ..| ..| | ..-...+.++..+..+++.+++-+......
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 111110 011 111 0 011234566666777888888888877776
Q ss_pred CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011652 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA-------LIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
. .+...++....+|...|.+......-....+.|.. ...-|+. +..+|.+.++++.+...|.+.....-.
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 4 45556677777888888888777777666655432 2222332 333566667788888888876654333
Q ss_pred CChhhHHH-------------------------HHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 338 PNSRTCNI-------------------------ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 338 p~~~~~~~-------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
|+...-.. -...+.+.|++..|...+.++++..|.|...|....-+|.+.|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 33222111 12234567888888888888888778888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
|++-.+...+.+. +....|..-..++....++++|.+.|++.++.+ |+..-+...+.-|..
T Consensus 411 aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 411 ALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 8887777776642 244455555556666677888888888877643 444444433333333
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3e-07 Score=78.62 Aligned_cols=350 Identities=11% Similarity=0.049 Sum_probs=219.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
+.-+....++..|+.+++.-...+.-....... +...+.+.|++++|...|..+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 666777899999999998866544422323344 4455678999999999999888755 67777888888788888999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
.+|..+-....+ ++..-..|.....+.++-++...+-+.+.+. ..--.++.......-.+.+|++++.++.
T Consensus 108 ~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988876653 5555566666777788877777766666542 2333445555555668999999999998
Q ss_pred hCCCCccHHHHHH-HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHhHHH--HH----------
Q 011652 263 STVCRPTSFIYSV-LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK--ANKFKNVY--RV---------- 327 (480)
Q Consensus 263 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~--~~---------- 327 (480)
.. .|+-...+. +.-+|.+..-++-+.++++-.... ++.+....|.......+ .|+..+.+ .+
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 76 345444444 345667788888888888876654 33345555554443333 23221111 11
Q ss_pred HHHHHhCCC------------CC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHH-------------
Q 011652 328 LKDMNSKGV------------AP-----NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY------------- 377 (480)
Q Consensus 328 ~~~~~~~~~------------~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 377 (480)
.+.+.+.++ -| -+..-..++-.|.+.++..+|..+.+.+. |.++.-|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhh
Confidence 111111110 01 11122334445778899999988877653 2222222
Q ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 378 ------------------------------TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 378 ------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
.++..++.-..++++.+..++.+...-...|. .-..+.++++..|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcChHH
Confidence 12333333334444455444444443222222 22347788888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
|.++|-+.....++.+..-...+.++|.+.|+.+.|..++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9999988876555544444456788999999999998887654
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=9.2e-09 Score=89.96 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 011652 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV-SDSCVLLED 434 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 434 (480)
+.+|..+|+++....++++.+.+.+..++...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 444444444444333344444444444444444444444444444333221 333333344433444433 333344444
Q ss_pred HH
Q 011652 435 MI 436 (480)
Q Consensus 435 ~~ 436 (480)
+.
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 43
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.5e-08 Score=88.69 Aligned_cols=252 Identities=14% Similarity=0.172 Sum_probs=166.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (480)
++.+--.|++..++.-.+ .....-+.+......+.+++...|+.+. +..++.....|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 344556788888887666 3322212234455567788888888664 445555544677777766766665545555
Q ss_pred HHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011652 218 RAREIFREMVDTGCNPDIVTY-GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
.+..-+++....+..++..++ ......+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666555554433333222233 33335667789999998888643 34566677788899999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 011652 297 EKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 297 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.....+.
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 875 233 444445554433 33688999999998765 5567888888889999999999999999988877777
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 011652 373 DADTYTMMIKMFCQGGEL-EKAFKVWKYMKLK 403 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 403 (480)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888888888888888887 6677888888764
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=1.6e-06 Score=90.58 Aligned_cols=336 Identities=10% Similarity=0.039 Sum_probs=210.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC-------CC--hhhHHHHHHHh
Q 011652 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-------PD--SKTYSILLEGW 210 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~l~~~~ 210 (480)
.....|+++.+..+++.+.......+..........+...|+++++..++........ +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112222333444556678999999998887754211 11 11222334455
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---Cc--cHHHHHHHHHHhh
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIVKSMDSTVC---RP--TSFIYSVLVHTYG 281 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 281 (480)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++...... .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 2345556667789999999999888764211 11 1234455677788
Q ss_pred ccCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011652 282 VENRIEDAVDTFLEMEK----NGIL--A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG--VAP--NSRTCNIILNGL 350 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~~ 350 (480)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998887654 2211 1 22334455566777899999999988875531 112 123344456677
Q ss_pred HhCCChHHHHHHHHHHHhc--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 011652 351 IGRGETDEAYRVFRRMIKL--CEADADTY-----TMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLINGLC 420 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 420 (480)
...|+.+.|.+.+..+... .......+ ...+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7899999999999888651 11111111 1122444567899999998877554221111 112345667788
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 421 DKGIVSDSCVLLEDMIEK----GIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
..|++++|...++++... |..++ ..+...+..++.+.|+.++|.+.+.+..++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999988743 32222 23566677888899999999999999887654
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2e-06 Score=77.81 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHH---HHHHHHHhc---CCCCCHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV---YTFNVMQKY---GVTQNLAA 168 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~ 168 (480)
.-+..|+-...++.-.|++++|+.-|.+-.+..+.+...+.-+..++.......+.. .++..+... ........
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 457889999999999999999999999999988888888888888873221111110 111111110 00001122
Q ss_pred HHHHHHHHHcc----------CChhhHHHHHHHh------hc-------CCCC----------------------ChhhH
Q 011652 169 FNGLLSALCKS----------KNVRKAQEIFDCM------KD-------RFIP----------------------DSKTY 203 (480)
Q Consensus 169 ~~~ll~~~~~~----------~~~~~a~~~~~~~------~~-------~~~~----------------------~~~~~ 203 (480)
|..++..+-+. ..+..+.-.+... .. ...| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 33333222111 0011111111110 00 0011 01124
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHH-------HH
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS-------VL 276 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l 276 (480)
..+.+...+..++..|.+.+....... -+..-++....+|...|.+.++....+...+.|. -...-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 567778888899999999999988764 3555566777788889988888777776655542 1222222 23
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------------------HHHHHHHHHcCCHhHHHHHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMY-------------------------NALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
..+|.+.++++.++..|.+....-..|+...- ..-...+.+.|++..|...+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44667778899999988887654333332111 11133467889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011652 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 332 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 411 (480)
+...+. |...|..-.-+|.+.|.+..|++-.+...+..++....|..=..++....++++|.+.|++..+.+ |+..-
T Consensus 385 Ikr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e 461 (539)
T KOG0548|consen 385 IKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE 461 (539)
T ss_pred HhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH
Confidence 998643 788999999999999999999999888888777777778777777777889999999999999876 55544
Q ss_pred HHHHHHHHHh
Q 011652 412 FSVLINGLCD 421 (480)
Q Consensus 412 ~~~l~~~~~~ 421 (480)
+.--+.-|..
T Consensus 462 ~~~~~~rc~~ 471 (539)
T KOG0548|consen 462 AIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHH
Confidence 4444443433
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=1.8e-05 Score=71.88 Aligned_cols=408 Identities=11% Similarity=0.111 Sum_probs=211.5
Q ss_pred CCCHHHHHHHHHHHhhCcH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
+-+-+....+++.....+- +.+++++.+... ++.++..|..-|....+.++++..+.+|.++...- .+.+.|..-+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHH
Confidence 3445566667766654433 677777766544 34566777777777777788888888887776542 4555565555
Q ss_pred HHHHHh-CCHHH----HHHHHHHH-HhcCCCCC-HHHHHHHHHHH---------HccCChhhHHHHHHHhhcCCCCCh-h
Q 011652 139 RKYARV-QKVEE----AVYTFNVM-QKYGVTQN-LAAFNGLLSAL---------CKSKNVRKAQEIFDCMKDRFIPDS-K 201 (480)
Q Consensus 139 ~~~~~~-~~~~~----a~~~~~~~-~~~~~~~~-~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~~~-~ 201 (480)
..--+. |+... -.+.|+-. .+.|+.+- -..|+..+..+ ....+++...+++.++...--.+. .
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 543322 22222 22333332 33443332 33455555433 223345556667776664211111 1
Q ss_pred hHH------HHHHHh-------hcCCChhHHHHHHHHHH--HcCCCCChhh---------------HHHHHHHHHhcC--
Q 011652 202 TYS------ILLEGW-------GKDPNLPRAREIFREMV--DTGCNPDIVT---------------YGIMVDVLCKAG-- 249 (480)
Q Consensus 202 ~~~------~l~~~~-------~~~~~~~~a~~~~~~~~--~~~~~~~~~~---------------~~~l~~~~~~~g-- 249 (480)
.|+ .-|+.. -+...+..|.++++++. -.|......+ |..+|.---..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 121 111111 12334556666666654 2232222111 222222111110
Q ss_pred ----CH--HHHHHHHHHh-hhCCCCccHHHH-----HHHHHHhhccCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 250 ----RV--DEALGIVKSM-DSTVCRPTSFIY-----SVLVHTYGVENR-------IEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 250 ----~~--~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
.. ....-.+++. .-.+..|+.... ...-+.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111111 112223332211 111122233332 4566777777655322334444444
Q ss_pred HHHHHHHcC---CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHH
Q 011652 311 LIGAFCKAN---KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC-EADADTYTMMIKMFC 385 (480)
Q Consensus 311 li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~l~~~~~ 385 (480)
+..---..- ..+.....++++...-..--..+|...++...+...+..|..+|.++.+ .. +.++.++++++..||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 433211111 2555566666665542222234677777777777788888888888877 32 336667777777766
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG--ETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 463 (480)
. ++..-|.++|+.-..+- .-++.--...+.-+.+.++-..|..+|++....++.|+. .+|..++..-..-|+.+.+
T Consensus 414 s-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred c-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 4 56777888887544431 123334455666777778888888888888876555443 5688888877888888888
Q ss_pred HHHHHHHHh
Q 011652 464 KFLQEKMNL 472 (480)
Q Consensus 464 ~~~~~~~~~ 472 (480)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 777776654
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=6.3e-07 Score=84.39 Aligned_cols=311 Identities=9% Similarity=-0.003 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (480)
.++++.+++..+.++.|+.+...+.--|+..++.+.|.+...+..+.+-..+...|..|.-++...+++..|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56778888888888866666667777778888888888888888887557788888888888888888888888888877
Q ss_pred cCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCccHH
Q 011652 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPTSF 271 (480)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 271 (480)
+.++.|......-+..-...++.++++.....+...- + +.... ...++-....+....+.-. .......
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w-e-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW-E-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH-H-hhhhH-------hhhhhhhhhhhhhcccccCcccccccch
Confidence 6555555444444555555777777777766665310 0 00000 0111111122222221110 1111122
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011652 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILA--D------VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
++..+.......+........ +......| + ...|......+.+.+..++|...+.+..... .-....|
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY 687 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence 232222222111110000000 11111111 1 2234455567788888899988888877652 2245566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK--VWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
......+...|...+|.+.|.......|.++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+-+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK 766 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 6666777888999999999999988778888899999999999998888888 99999988754 88999999999999
Q ss_pred cCChHHHHHHHHHHHHc
Q 011652 422 KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~ 438 (480)
.|+.++|.++|+...+.
T Consensus 767 ~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQL 783 (799)
T ss_pred ccchHHHHHHHHHHHhh
Confidence 99999999999988754
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=8e-06 Score=69.85 Aligned_cols=304 Identities=10% Similarity=0.068 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-hhHHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILL 207 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~ 207 (480)
.+..-..-+...+...|++..|+.-|...++.+ +.+-.++---...|...|+...|+.-+.+..+. +||- ..-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHhc
Confidence 445556677888888899999999998888642 222223333345677888888888888877764 3443 2233345
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCC--hhhH------------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPD--IVTY------------GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (480)
..+.+.|.++.|..-|+..+++...-+ ...+ ...+..+...|+...|+.....+.+.. +.+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 577889999999999999988643211 1111 123344566788899999888888764 6688888
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH-------
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII------- 346 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------- 346 (480)
..-..+|...|++..|+.-++...+..- .+..++.-+-..+...|+.+.++...++..+. .||...+-..
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 8888999999999999888877766543 35566666777888889999999888888875 4554322111
Q ss_pred H------HHHHhCCChHHHHHHHHHHHhcCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 347 L------NGLIGRGETDEAYRVFRRMIKLCEA-D---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 347 ~------~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
. ......+++.++.+-.+...+..+. . ...+..+-.++...|++.+|++...++.+... .|+.++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHH
Confidence 1 1223456666666666665552221 1 22344555666677888888888888877542 2477777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 011652 417 NGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.+|.-...+++|+.-|+.+.+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888888887653
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=7.8e-06 Score=85.60 Aligned_cols=333 Identities=11% Similarity=0.029 Sum_probs=212.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CCCH--HHHHHHHHHHH
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV------TQNL--AAFNGLLSALC 177 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll~~~~ 177 (480)
+...|+++.+..+++.+..... .++.........+...|+++++..++......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455777777777766532211 2233334445556678999999999987754210 1111 12223334566
Q ss_pred ccCChhhHHHHHHHhhcCCCC-C----hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHh
Q 011652 178 KSKNVRKAQEIFDCMKDRFIP-D----SKTYSILLEGWGKDPNLPRAREIFREMVDTGCN---P--DIVTYGIMVDVLCK 247 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~ 247 (480)
..|++++|...+++.....+. + ....+.+...+...|++++|...+.+.....-. + ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987652221 1 134456677778899999999999888643111 1 12344556677888
Q ss_pred cCCHHHHHHHHHHhhhC----CCC--c-cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 011652 248 AGRVDEALGIVKSMDST----VCR--P-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--ILA--DVAMYNALIGAFC 316 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~ 316 (480)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876542 211 1 23334556667778899999999988875421 112 2334444566778
Q ss_pred HcCCHhHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHHhCCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh
Q 011652 317 KANKFKNVYRVLKDMNSKGVAP-NSRTC-----NIILNGLIGRGETDEAYRVFRRMIKLCEADA----DTYTMMIKMFCQ 386 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 386 (480)
..|+.+.|...+.......... ....+ ...+..+...|+.+.|..++........... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421110 11111 1122444568899999999877654211111 124567788889
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 387 GGELEKAFKVWKYMKLK----RFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987653 32222 2456667778899999999999999998653
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=2.3e-07 Score=86.78 Aligned_cols=218 Identities=10% Similarity=0.077 Sum_probs=169.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
..+...+...|-...|..+++++.. |..++.+|+..|+..+|..+..+..++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 4566778888999999999887653 667788899999999998888887773 67888888888777666
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
.-+++|.++.+....+ .-..+.......++++++.+.|+...+..+....+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 6678888887765443 111111222346888899999988888777888888888888888999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.-....+ -+...|+.+-.+|.+.|+..+|...++++.+.+ .-+...|...+-...+.|.+++|.+.+.++.++++.
T Consensus 544 rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 544 RCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 8776542 256789999999999999999999999998776 446667777777788889999999999888877654
No 97
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1.7e-06 Score=76.86 Aligned_cols=211 Identities=10% Similarity=0.001 Sum_probs=124.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
+-..+...++.++|+.+.+.+.+.++.+..+|+.....+...| .+++++..++.+.+.+ +.+..+|+.-..++.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 3334445566677777777777666666666666655555665 4677777777776654 3444556554444444454
Q ss_pred h--hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CC----HH
Q 011652 182 V--RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA---GR----VD 252 (480)
Q Consensus 182 ~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~ 252 (480)
. +++..+++.+.+..+-|..+|+...-.+...|+++++++.++++++.++. +...|+.....+.+. |. .+
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 2 45666666666655667777777777777777777777777777766544 555555554444333 22 23
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
+.++....+.... +-+...|+.+...+... +...+|.+.+.+..+.++ .+......++..|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4555555555443 44566666666666552 334556666666555432 255666666666664
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.1e-07 Score=83.71 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=184.9
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
.-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456788899999899888876543 67788888888888888888888888888875 556777888888888999888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHHcCCHhHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhCCChH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALI---------GAFCKANKFKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIGRGETD 357 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~ 357 (480)
.|++.++.......+ ..|...- ..+..........++|-++. ..+..+|+.+...|--.|--.|+++
T Consensus 371 ~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 999988887654211 0000000 01111112334445554443 4454577888888888888999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+|...|+.+....|-|..+||.|.-.++...+.++|+..|++..+.. |+ +.....|..+|...|.+++|.+.|-+++
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999998864 55 3566778888999999999999988776
Q ss_pred Hc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011652 437 EK---------GIRPSGETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 437 ~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
.. +..++..+|..|-.++.-.++.+-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 42 1223345777777677767776655443
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.5e-05 Score=76.09 Aligned_cols=203 Identities=17% Similarity=0.166 Sum_probs=88.2
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
+.+|..+..+-.+.|.+.+|.+-|-+.. |...|..+++...+.|.+++-.+++....+....|.. -+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 3344444444444444444444332221 3334444444445555555544444444443322222 2234444
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
|++.++..+..+.+ .-|+......+.+-|...|.++.|.-++.. ...|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 44444444332221 113444444444444444444444433322 22344444444455555544
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
...-+++ .+..+|..+-.+|...+.+.-| +|....+.....-...++.-|-..|-+++-+.+++..+
T Consensus 1240 VD~aRKA-----ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKA-----NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhhhc-----cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 4443332 2344555555555444433222 22222222333445555566666666666666555543
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.8e-07 Score=83.12 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=189.3
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
-+.+.|++.+|.-.|+......|.+...|..|......+++-..|+..+.+..+.... +......|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 3567899999999999999888889999999999999999999999999999886433 567777788889999999999
Q ss_pred HHHHHHhhhCCCCc--------cHHHHHHHHHHhhccCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011652 255 LGIVKSMDSTVCRP--------TSFIYSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 255 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
++.++.......+- +...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99998876542110 0000000 1111222233445555554 45555578888888888999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 011652 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-- 403 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 403 (480)
..|+..+...+. |..+||.|...++...+.++|+..|+++.+..|--+.+...|.-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999999986433 67899999999999999999999999999876667778888999999999999999998776532
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011652 404 -------RFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 404 -------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
...++...|..|=.++.-.++.+-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 111234566666666666666554433
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=1.7e-06 Score=86.64 Aligned_cols=232 Identities=14% Similarity=0.141 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCc---cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRP---TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
...|...|......++.++|.++.++....- +.- -...|.++++.-..-|.-+...++|+++.+. -.....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 4455555666666666666666666654421 111 1224555555555555666666666666654 112345666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcC
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGG 388 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 388 (480)
|...|.+.+.+++|.++++.|.++ +.-....|...+..+.++++-+.|..++.++.+-.|. ......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666777777777777777777665 2235556777777777777777777777777663333 3444555555666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG--ETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
+.+.+..+|+.......+ ....|+.++..-.++|+.+.+..+|+++...++.|.. ..|...+..-...|+-+.++.+
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 777777777766654322 4567777777777777777777777777776665543 2355556555556665555444
Q ss_pred HHHH
Q 011652 467 QEKM 470 (480)
Q Consensus 467 ~~~~ 470 (480)
-.+.
T Consensus 1694 KarA 1697 (1710)
T KOG1070|consen 1694 KARA 1697 (1710)
T ss_pred HHHH
Confidence 4433
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.89 E-value=6.8e-06 Score=79.84 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
.|.+-|+.+.+... .+...+....+.|++..+++.|..+.-...+..+ .-..-|....-.|...++..+|+.-|+.
T Consensus 510 RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 57777776655443 4677778888888888888888888555444444 2233344445556677788888888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 011652 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (480)
..... |.|...|..+..+|.++|++..|.++|.+...-.|.+...-.-..-..+..|.+.+|...+....
T Consensus 588 ALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 588 ALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77665 56778888888888888888888888888776434343333333444556788888888777765
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=3.2e-05 Score=66.31 Aligned_cols=303 Identities=10% Similarity=0.033 Sum_probs=220.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF-NGLLS 174 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~ 174 (480)
++.-..-+-..+...|++..|+.-|....+.++.+-.++..-...|...|+..-|+.=+.+.++. +||...- ..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 34444556677778888999999998888876666666666667788888888888888888774 6664332 22334
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCCh---hh------------HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDS---KT------------YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
.+.+.|.++.|..-|+.+....+.+. .. ....+..+.-.|+...|+.....+++- .+.|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 56788999999998888876433111 11 123344566788999999999998875 345788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---H
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM----YNAL---I 312 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l---i 312 (480)
.-..+|...|++..|+.=+....+.. ..+..++.-+-..+...|+.+.++...++..+. .||... |..+ .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 88899999999999988777766554 445566666777888889999999888888775 455332 2111 1
Q ss_pred ------HHHHHcCCHhHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 313 ------GAFCKANKFKNVYRVLKDMNSKGVAPNSR---TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 313 ------~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
......++|.++..-.+...+........ .+..+-.++...+++.+|++...++....+.|+.++..-..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 12344667777877777777764432223 344556677788999999999999998778889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 011652 384 FCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~ 404 (480)
|.-...++.|+.-|+...+.+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999998865
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=3.3e-06 Score=84.72 Aligned_cols=247 Identities=10% Similarity=0.063 Sum_probs=192.5
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNPD---IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
.+=|+++....|.+...|-..|......++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|+++
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34455555565667888999999999999999999999998854 11111 345777777777788888999999999
Q ss_pred hhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CCh
Q 011652 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNS 340 (480)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~ 340 (480)
.+. ...-..|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+.+.|..++.+..+.-+. -..
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 885 334556889999999999999999999999875 2246778999999999999999999999998875221 134
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLING 418 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~ 418 (480)
......+..-.+.|+.+.+..+|+......|--...|+.+++.-.++|+.+.+..+|+++...++.|-. ..|.-.+..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 456667777789999999999999999988888899999999999999999999999999998877543 344545544
Q ss_pred HHhcCChHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~ 435 (480)
--..|+-+.+..+=.++
T Consensus 1681 Ek~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHhcCchhhHHHHHHHH
Confidence 44455554444444333
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=3.6e-07 Score=85.47 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=180.0
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
-..-..+...+...|-..+|..+++++.. |..++.+|...|+..+|..+..+..+. +|+...|..+.+.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 33445677788889999999999988753 566788999999999999998888773 8899999999998
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
.....-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+.- ...+|-..-.+..+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHH
Confidence 88888889999988876542 1112222234478999999999988776322 456788888888899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+.|.......|.+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++..
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999999999999887 44777888888889999999999999998874
No 106
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=6.3e-06 Score=73.31 Aligned_cols=204 Identities=7% Similarity=0.015 Sum_probs=88.5
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV--DEAL 255 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~ 255 (480)
.+..++|+.+.+++....+.+..+|+....++...| ++++++..++++.+.+.+ +..+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 344444444444444433334444444444444444 344555555555443322 223333332223333331 3445
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HhHHHHHH
Q 011652 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA---NK----FKNVYRVL 328 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~ 328 (480)
.+++.+.+.. +-+..+|+...-++...|+++++++.++++.+.+.. +..+|+.....+.+. |. .++.....
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 5554554443 334455555555555555555555555555554332 334444433333222 11 12344444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhC----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 329 KDMNSKGVAPNSRTCNIILNGLIGR----GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.++....+. +...|+.+...+... +...+|.+.+.+.....+.+......|+..|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 444443222 344455554444442 223345555555444334445555555555553
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=5.5e-06 Score=78.80 Aligned_cols=240 Identities=12% Similarity=0.143 Sum_probs=124.2
Q ss_pred CHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-C--------CCC
Q 011652 96 SVRAYHSMIE--SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-G--------VTQ 164 (480)
Q Consensus 96 ~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~ 164 (480)
|..+--++++ .|.--|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+-.|... | -.+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 3444444443 3445566666666555544 3455666666666666666555544443211 0 011
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011652 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (480)
+ ..-.-..-.....|.+++|+.+|.+.+. |..|=..|...|.+++|.++-+.-.+-.+ ..||......
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKY 867 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHH
Confidence 1 1111111123345666666666666553 33344445556666666665543222111 1344444444
Q ss_pred HHhcCCHHHHHHHHHHhhhC----------C---------CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011652 245 LCKAGRVDEALGIVKSMDST----------V---------CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
+-..++.+.|++.|++.... . ...+...|......+...|+.+.|+.+|.....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 44455666666655542111 0 012334455555566666777777777766553
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
|-.+++..|-.|+.++|-++-++-- |......+.+.|-..|++.+|..+|.++.
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445555556666666666554422 44455566677777777777777776654
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=4.1e-06 Score=78.69 Aligned_cols=319 Identities=14% Similarity=0.149 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...-.+.+..+...|+-++|-++-+. +.. -.+.|..|.+.|.+..|...-..-.. +..|......+..++
T Consensus 589 eklk~sy~q~l~dt~qd~ka~elk~s-------dgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~al 658 (1636)
T KOG3616|consen 589 EKLKRSYLQALMDTGQDEKAAELKES-------DGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAAL 658 (1636)
T ss_pred HHHHHHHHHHHHhcCchhhhhhhccc-------cCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHH
Confidence 34445566677777777766554321 111 12456677777777666554321111 123444444444444
Q ss_pred HccCChhhHHHHHHHhhc-----------------------CCCCChhhH-HHHHHHhhcCCChhHHHHHHHHHHHcCCC
Q 011652 177 CKSKNVRKAQEIFDCMKD-----------------------RFIPDSKTY-SILLEGWGKDPNLPRAREIFREMVDTGCN 232 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~-----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (480)
.+..-+++|-.+|+++.. .+|..+.+. ......+...|+++.|...|-+..
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~----- 733 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----- 733 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----
Confidence 444444444444444331 011111110 111222223334444433332221
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.....+.+......|.+|+.+++.+... ..-...|..+...|+..|+++.|.++|.+.- .++-.|
T Consensus 734 ----~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai 798 (1636)
T KOG3616|consen 734 ----CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAI 798 (1636)
T ss_pred ----hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHH
Confidence 1233455666777888888888888765 3344567778888889999998888886532 245567
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
.+|.+.|+|+.|.++-.+... .......|-.-..-+-.+|++.+|++++-.+- .|+. .|.+|-+.|..+.
T Consensus 799 ~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchH
Confidence 888899999988888766543 34445556666666777888888887765443 2443 3567777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
..++..+-... .-..|...+..-+-..|+..+|...|-+..+ |.+.++.|...+.|++|.++.
T Consensus 869 mirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 869 MIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 77766543211 1124555666667777777777776654422 444455555555566655554
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.6e-05 Score=73.51 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--------M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
+-.+|..+...+.+.++.+-|.-.+..|.... . .+.++=..........|.+++|..+|.+.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 55799999999999999999888877765321 1 11122333444556789999999999988763
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHH----------HcCC-----
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV----------DTGC----- 231 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~----- 231 (480)
..|=..|-..|.+++|.++-+.-.. ..-..||......+-..++++.|++.|++.. ...+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR--IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc--eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3455567788999999988765432 1234567777777777888999998887642 1110
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 011652 232 ----NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307 (480)
Q Consensus 232 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (480)
..|...|.-.....-..|+.+.|+.+|..... |-.+++..|-.|+.++|-++-++-. |...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHH
Confidence 11333344444444556788888888876554 4566677777788877776655432 4455
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
...+.+.|-..|++.+|...|.+..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777777777777777776654
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=7.2e-06 Score=67.68 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=108.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
+-+.-.|++..++..-+..... +.++..-..+.++|...|.+... ..+++.+..|.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhHH
Confidence 3344455565555554443332 12333333344555555554322 222333223333333333333333333333
Q ss_pred HHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 219 ARE-IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 219 a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
-+. +.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22333332222222222233345666666666666665421 11112222333445555666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 011652 298 KNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 298 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+. .+..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++.+......+
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 53 244455555554443 23455666666666553 34555555666666666666666666666665544555
Q ss_pred HHHHHHHHHHHHhcCC
Q 011652 374 ADTYTMMIKMFCQGGE 389 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~ 389 (480)
+.+...++-+-...|.
T Consensus 241 petL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 241 PETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5555444444444443
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00012 Score=67.55 Aligned_cols=353 Identities=11% Similarity=0.086 Sum_probs=202.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChh
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVR 183 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 183 (480)
..-+.+..++|...++... ..+..+...-...+.+.|++++|.++|+.+.+.+. ++.. .-..++.+-. .-
T Consensus 88 c~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l 159 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----AL 159 (652)
T ss_pred HHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hh
Confidence 3457899999999998332 24566777788889999999999999999988763 3322 1122221111 11
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC-------------CCCChh-hHHHHHHHHHhcC
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-------------CNPDIV-TYGIMVDVLCKAG 249 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~g 249 (480)
.+. +.+........+-..+....-.++..|++.+|+++++...+.+ +.-+.. .-..+...+-..|
T Consensus 160 ~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 160 QVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 111 2333333211122333334456677899999999998883211 000111 1123455667789
Q ss_pred CHHHHHHHHHHhhhCCCCccHHH----HHHHHHHhhccCCHH-HHHHHHHH------------H----------------
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFI----YSVLVHTYGVENRIE-DAVDTFLE------------M---------------- 296 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~a~~~~~~------------~---------------- 296 (480)
+.++|..++..+.+.. ++|... -|.++..-....-++ .++..++. +
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888765 333211 122221111110000 00000000 0
Q ss_pred -------------HHC-CCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHH
Q 011652 297 -------------EKN-GILADVAMYNALIGAFCK--ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 297 -------------~~~-~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
... +..| ...+..++....+ ...+..+..++...-+....-...+....++.....|+++.|.
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 000 1111 2333334433222 2246667777766666533333455666777788899999999
Q ss_pred HHHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHhcCChHH
Q 011652 361 RVFRRMIK-------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK--RFIPSM----HTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 361 ~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~ 427 (480)
+++..... .....+.+...+...+.+.++.+.|..++.+...- .-.+.. .++..+...-.+.|+.++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 98883221 23345556677778888888888788887776531 011122 233334444456799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
|..+++++.+.. ++|..+...++.+|++.. .+.|..+-+++.
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L~ 518 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcCC
Confidence 999999999854 578888888998888754 677776665543
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=7.9e-05 Score=72.84 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011652 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (480)
.+.+|..+..+-.+.|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+++....+..-+|... ..++-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 45678888888888888888887776554 77888899999999999999988888777766566544 467778
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
|++.++..+.++++. -||......+.+-|...|.++.|.-+|... .-|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 888888877666553 577777778888888888888887776544 3477777788888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
...-++.- +..||..+-.+|...+.+.-|. |.. .......-...++..|-..|-+++...+++.....
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 76655432 5678888888888777665542 222 33445566778888899999999988888876532
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
. ......|+.+.-.|.+- ++++..+.++-.-.+ .-.-.+++++....-|.+..-++.+-.+.
T Consensus 1309 E-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1309 E-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred h-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 12345677777777664 355555555544322 11335677887777777777666655443
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=1.3e-06 Score=75.28 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH---
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--- 167 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 167 (480)
+.....+..+...+.+.|+++.|...|+++....+.++ .++..+...+...|++++|+..++.+.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 35677778888888899999999999999887766333 567788888889999999999999988754 22222
Q ss_pred HHHHHHHHHHcc--------CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 168 AFNGLLSALCKS--------KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 168 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
++..+..++... |+.+.|.+.|+.+....+.+...+..+..... . ..... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~--------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH--------HHHH
Confidence 344444455443 66778888888877654444444332221110 0 00000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVC--RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
.+...+.+.|++.+|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678888999999999998876531 223567788889999999999999988887764
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.76 E-value=5.9e-06 Score=81.97 Aligned_cols=238 Identities=10% Similarity=0.069 Sum_probs=160.8
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++...+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 677888999999999999999999998777653 33333444444466666665554433 3344
Q ss_pred HhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHH
Q 011652 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 4444555544555555555532 244577788889999999999999999998887 67788889999888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|..++.+.... |...+++..+..+|.++....+. +...+..+ .+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHh
Confidence 98888887653 56666888888888888875222 22222222 222222
Q ss_pred --cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 369 --LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 369 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
+..--..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12233445666667777788888888888888877644 5566666676665
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=5.5e-06 Score=68.38 Aligned_cols=159 Identities=13% Similarity=0.014 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011652 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 101 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 180 (480)
..+-..+.-.|+-+....+........+.+.......+....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4445555556666666666665554444555566666666677777777777777666544 666677777777777777
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
+++.|..-|.+..+-.+.++...+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777776666655556666666666666667777777766666654322 445555555566666676666666544
Q ss_pred h
Q 011652 261 M 261 (480)
Q Consensus 261 ~ 261 (480)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 3
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=5.6e-06 Score=68.49 Aligned_cols=153 Identities=12% Similarity=0.176 Sum_probs=109.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567788888776544422221 11 0122356667777777777766433 677888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMF-CQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
++|...+++..+..+.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887777888888888764 56676 48888888888887644 67788888888888888888888888
Q ss_pred HHHHcCCCCCH
Q 011652 434 DMIEKGIRPSG 444 (480)
Q Consensus 434 ~~~~~~~~p~~ 444 (480)
++.+.. .|+.
T Consensus 169 ~aL~l~-~~~~ 178 (198)
T PRK10370 169 KVLDLN-SPRV 178 (198)
T ss_pred HHHhhC-CCCc
Confidence 888753 3444
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=5.6e-06 Score=68.34 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=106.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44556666667666666666654332 22355555566677777777777777777776642 34677777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
|+++.|..-|.+..+..+-++..++.+...|.-.|+.+.|..++......+.. |...-..+.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777777777766666677777777777777777777777777665432 55666666667777777777777655
Q ss_pred HH
Q 011652 434 DM 435 (480)
Q Consensus 434 ~~ 435 (480)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.71 E-value=4.5e-05 Score=71.98 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=84.9
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+.+......+.+|+.+++.+... ..-...|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34444556666666666666542 1123345566666666667666666664322 2344556666667776
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.|.++-++... .......|.+-..-+-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..+...++..+-.
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 66666555432 233344444444555556666666655543322 22 23455555665555555554432
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
... -..|-..+..-+...|++..|+..|
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 211 1123333444444445555554444
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=8.7e-06 Score=80.79 Aligned_cols=240 Identities=7% Similarity=0.068 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..|+..+...+++++|.++.+......+.....|..+...+.+.++.+++..+ . ++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 46789999999999999999999999988888776666666666677788876666555 2 233
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
......++.-...+...+.. ...+...+..+..+|-+.|+.++|..+++++++... -|..+.|.+...|... ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 33333334333333333333 233555778888888888999999999998888763 3778888888888888 88888
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.+++.+.... +...+++..+.+++.++...... +...+-.+.+.....-
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~--------------- 217 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR--------------- 217 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------
Confidence 8888776643 45556777777777777765321 2222222222211110
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
|..--..++-.+-..|-..++++++..+++.+.+..+.|......++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 111123344445555666666777777777777655556666666666665
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=5.1e-05 Score=74.03 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+..|-...+... .=...|..+...|....+...|...|+...+.+..+..........|++..+++.|..+.-..-
T Consensus 476 ~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 45555544433322 2346788888888888899999999999999888888999999999999999999999843322
Q ss_pred hcC-CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 159 KYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 159 ~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
+.. ...-...|....-.|...++...|..-|+...+..|.|...|..++.+|...|.+..|.++|.+.... .|+ .+
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hH
Confidence 211 00111223334445677889999999999998887889999999999999999999999999988764 333 23
Q ss_pred HHHH--HHHHHhcCCHHHHHHHHHHhhh
Q 011652 238 YGIM--VDVLCKAGRVDEALGIVKSMDS 263 (480)
Q Consensus 238 ~~~l--~~~~~~~g~~~~a~~~~~~~~~ 263 (480)
|... .-.-+..|.+.+++..++.+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3322 2345667899998888887754
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=2.8e-06 Score=73.24 Aligned_cols=185 Identities=14% Similarity=0.023 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh---h
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL---AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK---T 202 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 202 (480)
.....+..+...+...|++++|...|+++.+.. +.+. .++..+..++...|++++|...++.+.+..+.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 567788888899999999999999999988753 2232 46677888999999999999999999875554443 4
Q ss_pred HHHHHHHhhcC--------CChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH
Q 011652 203 YSILLEGWGKD--------PNLPRAREIFREMVDTGCNPDIV-TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273 (480)
Q Consensus 203 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (480)
+..+..++.+. |++++|.+.++++.+.. |+.. .+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence 55556666554 67888999999888653 3322 2222111100 0000 0 0112
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGI--LADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
..+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2466778999999999999999887532 123568889999999999999999999988765
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.00044 Score=67.07 Aligned_cols=213 Identities=10% Similarity=0.039 Sum_probs=113.2
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011652 49 VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128 (480)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 128 (480)
.+...|++.+..+...++..+...-...+++|..+++.....++ .|..+...+-..|.+.++.++|..+|++.....|
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 44455555555555554444443333444466666666544433 3666777777777777777777777777766554
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hhhHHHHHHHhhcCC-C
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN----------VRKAQEIFDCMKDRF-I 197 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~-~ 197 (480)
. .+-...+..+|++.+++.+-.+.--++-+ ..+-....+-++++.+..... ..-|.+.++.+.+.. +
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 3 66666666677776665554444333333 234445555555555443211 223444444444411 1
Q ss_pred -CChhhHHHHHHHhhcCCChhHHHHHHH-HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011652 198 -PDSKTYSILLEGWGKDPNLPRAREIFR-EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 198 -~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
.+..-.......+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...+
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 111112222233344566777777773 33333223333444455666677777777777777776665
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.5e-08 Score=54.80 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
|+.||..+|+.+|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=1.3e-05 Score=78.74 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHH
Q 011652 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 301 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
...+...+..|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|+...++.....+.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3446888888888889999999999999999886 444 4566777888889999999999999999888888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 450 (480)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.- .|...-|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 9999999999999999999998744 2257888888999999999999999999988642 3334444433
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.9e-05 Score=65.32 Aligned_cols=248 Identities=10% Similarity=0.046 Sum_probs=161.6
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
-+.-.|.+..++..-...... +.+...-..+-++|...|.+.....- ... |-.|.......+......-++.+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHH
Confidence 344457777666655554432 13444455566677777765543332 221 1133444444444444444444443
Q ss_pred HH-HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 255 LG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
.. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 44444444334444444555667889999999999887722 233333334556778889999999999987
Q ss_pred CCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 334 KGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
- -+..|.+.|..++.+ .+...+|.-+|+++.+..+|++.+.+....++...|++++|..++++...+... ++
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 5 356677777777754 456889999999999889999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSD-SCVLLEDMIE 437 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 437 (480)
.+...++-.-...|...+ ..+.+.++..
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777777766666666544 4456666654
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.5e-08 Score=54.38 Aligned_cols=32 Identities=56% Similarity=1.111 Sum_probs=18.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=3e-06 Score=66.24 Aligned_cols=106 Identities=8% Similarity=-0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+..+...+...|++++|...|+......+.+..+|..+...+...|++++|+..|+...+.+ +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 44556666777777777777777777777777777777777777777777777777777654 45666677777777777
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
|++++|...|+......+.+...|...
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 777777777777766544455555433
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00037 Score=63.75 Aligned_cols=374 Identities=9% Similarity=0.084 Sum_probs=231.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
-|..+|+.||+-+... .++++.+.++++...-+.++..|..-|..-.+.++++....+|.+....- .+...|...++
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 5999999999987666 99999999999998888889999999999999999999999999887753 45667777775
Q ss_pred HHHc-cCChhh----HHHHHHHhhc--CC-CCChhhHHHHHHHh---------hcCCChhHHHHHHHHHHHcCCCC----
Q 011652 175 ALCK-SKNVRK----AQEIFDCMKD--RF-IPDSKTYSILLEGW---------GKDPNLPRAREIFREMVDTGCNP---- 233 (480)
Q Consensus 175 ~~~~-~~~~~~----a~~~~~~~~~--~~-~~~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~---- 233 (480)
--.+ .|+... ..+.|+-... +. ..+...|+..+..+ ..+.+++...++|+++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4333 233333 2333444333 22 22334466555543 33446677888888887531110
Q ss_pred --ChhhHHHHHHHH-------HhcCCHHHHHHHHHHhhh--CCCCccHH---------------HHHHHHHHhhcc----
Q 011652 234 --DIVTYGIMVDVL-------CKAGRVDEALGIVKSMDS--TVCRPTSF---------------IYSVLVHTYGVE---- 283 (480)
Q Consensus 234 --~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~---- 283 (480)
|-..|..-|+.. -+...+..|.++++++.. .|...+.. .|..+|.-=-..
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 112222222211 123356677777777643 22111111 133333221111
Q ss_pred --CCH--HHHHHHHHH-HHHCCCCCCHHHHH-H----HHHHHHHcCC-------HhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 284 --NRI--EDAVDTFLE-MEKNGILADVAMYN-A----LIGAFCKANK-------FKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 284 --g~~--~~a~~~~~~-~~~~~~~~~~~~~~-~----li~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
|.. ....-.+++ +.-.+..|+..... . .-+.+...|+ .+++..+++...+.-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122223333 22333444432211 1 1122333343 56788888877664333355555555
Q ss_pred HHHHHhC---CChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 011652 347 LNGLIGR---GETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCD 421 (480)
Q Consensus 347 ~~~~~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 421 (480)
...--.. +..+.....++++.. ....-..+|..+++...+...+..|..+|.++.+.+..+ .+..+.+++.-+|.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 5432222 236667777777776 223334578888999999999999999999999887666 67788888887775
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
++..-|.++|+--+.. ...++..-...++.+...++-+.++.+|++....
T Consensus 415 -kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7789999999987754 3344555567788888888888888888887654
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=2.1e-06 Score=71.02 Aligned_cols=119 Identities=11% Similarity=0.151 Sum_probs=62.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCC--hhhHH
Q 011652 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-CKSKN--VRKAQ 186 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~ 186 (480)
.++.+++...++...+.++.+...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3344455555555555555555555555555555555555555555555543 33444444444432 34444 35555
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
+++++..+..+.+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544445555555555555555555555555555543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=7.5e-05 Score=67.36 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=112.0
Q ss_pred HHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCh
Q 011652 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGET 356 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 356 (480)
..+...|++++|+..++.+.+. .+.|+.........+.+.++..+|.+.++.+... .|+ ....-.+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3445678888888888888765 2335556666667888889999999999888876 444 45566677888888999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.+|..+++......+.|+..|..|.++|...|+..++.....+ ++...|++++|...+....
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 9999998888888888888999999999988888777655443 3566788888888888887
Q ss_pred HcCCCCCHHHHH
Q 011652 437 EKGIRPSGETFG 448 (480)
Q Consensus 437 ~~~~~p~~~~~~ 448 (480)
+. ++++..+|.
T Consensus 453 ~~-~~~~~~~~a 463 (484)
T COG4783 453 QQ-VKLGFPDWA 463 (484)
T ss_pred Hh-ccCCcHHHH
Confidence 64 344444443
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=7e-06 Score=64.18 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+......+...|++++|...|+.+....+.+...|..+..++...|++++|...|+.....+. .+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 334555566667777777777776666666667777777777777777777777777766542 2566666677777777
Q ss_pred CChHHHHHHHHHHHHc
Q 011652 423 GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~ 438 (480)
|+.++|...|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777653
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=9.3e-06 Score=79.75 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=128.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011652 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172 (480)
Q Consensus 93 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 172 (480)
+..++..+-.|..+..+.|++++|..+++...+..|.+...+..++..+.+.+++++|...+++..... +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 446899999999999999999999999999999999999999999999999999999999999999876 5677788888
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHH
Q 011652 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (480)
..++...|++++|..+|+++....+.+..++..+...+...|+.++|...|++..+.. .+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 8999999999999999999998666678999999999999999999999999998642 233444443
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=6.2e-06 Score=64.10 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...+++.....+.+...+..+...+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3333344444444444444444443332 223334444444444444444444444444333333344444444444444
Q ss_pred CChhHHHHHHHHHHH
Q 011652 214 PNLPRAREIFREMVD 228 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~ 228 (480)
|++++|.+.|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=7.9e-05 Score=67.25 Aligned_cols=181 Identities=11% Similarity=0.126 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHhhhCC--CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011652 250 RVDEALGIVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
++.++....+.+...+ -.|+...+...+........-..+..++.+..+. .-...-|..-+ .+...|..++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 3444444444443322 2344455555555443333333333333333321 11233344433 45678999999999
Q ss_pred HHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 328 LKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 328 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
+..+... .| |..........+...|+.++|.+.++.+....|......-.+.++|.+.|++.+|..+++.......
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p- 405 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP- 405 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-
Confidence 9998876 44 5555666778889999999999999999987777788888999999999999999999999887653
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
-|+..|..|..+|...|+..++.....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 488999999999999999888877666554
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00019 Score=59.08 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
|..++-+....|+.+.|...++.+..+-+.+..+-..-.-.+-..|++++|+++|+.+.+.+ |.|..++.--+.+.-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444444555666666666666555544333333222233334555666666666655544 44445554444444455
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
|+.-+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5555555555555555555556666666666666666666555555554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=1.5e-05 Score=61.93 Aligned_cols=111 Identities=10% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 011652 83 FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162 (480)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 162 (480)
.|+.+...++ .+......+...+...|++++|.+.|+.+...++.+...+..+...+...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDS--EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCCh--hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3444444433 3556677778888899999999999999988888888999999999999999999999999988875
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 196 (480)
+.+...+..+..++...|++++|...|+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6677888888889999999999999999888753
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00025 Score=58.42 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=80.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC
Q 011652 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (480)
..++-+....|+.+.|..+++.+...- |-+..+-..-...+-..|.+++|.++++.+.+..|.|..++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 333444445555666666666555432 2232222222223344556666666666665555555555555444444555
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC---CHHHHHH
Q 011652 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN---RIEDAVD 291 (480)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~ 291 (480)
+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+.+.+.-.| +.+.+.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543 33355566666666666666666666665555432 333333344443332222 3444555
Q ss_pred HHHHHHHC
Q 011652 292 TFLEMEKN 299 (480)
Q Consensus 292 ~~~~~~~~ 299 (480)
+|.+..+.
T Consensus 213 yy~~alkl 220 (289)
T KOG3060|consen 213 YYERALKL 220 (289)
T ss_pred HHHHHHHh
Confidence 55555543
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=5.7e-05 Score=68.70 Aligned_cols=124 Identities=14% Similarity=0.261 Sum_probs=76.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+....... +...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555556666777777777766652 33 2334555565666666677766666654222 444444455556666
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
++.+.|+.+.+++.+..|.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777776666666666777777777777777777766665543
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=0.00014 Score=57.07 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=67.9
Q ss_pred CCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHH
Q 011652 353 RGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 427 (480)
.++...+...++.+.+..+.+ ....-.+...+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666644444 233334556666677777777777777665422221 233445566667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
|+..++...... ..+..+......+.+.|++++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777775533222 2334455566777777777777777665
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=5.3e-05 Score=68.87 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++..+.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456677777899999999999999874 44 34557888888888999999999988653 3366667767777889
Q ss_pred cCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 318 ANKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
.++++.|..+.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999986 44 456999999999999999999999887653
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=0.00011 Score=57.60 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL--AAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 173 (480)
.|..++..+ ..++...+...++.+....+.+ ....-.+...+...|++++|...|+........+.. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444444444 3666777777777776665533 222333445666677777777777777665422221 2333455
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
.++...|++++|+..++.... .......+......+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666667777777777755432 223444555666666667777777666654
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.13 E-value=0.011 Score=58.00 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHhhCcH---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI 136 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 136 (480)
.++.+....++..+.++-. +|..+++++.+.. |+......+..+|.|.+.+.+-.+.--++-+.-+.++..|=+
T Consensus 73 ~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 73 KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 3344444444444433222 5666666665543 345555555556666666544433333333333333444444
Q ss_pred HHHHHHHhC-C---------HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHh-hc-CCCCChhhH
Q 011652 137 IMRKYARVQ-K---------VEEAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCM-KD-RFIPDSKTY 203 (480)
Q Consensus 137 li~~~~~~~-~---------~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~ 203 (480)
+++...... . ..-|.+..+.+.+.+-+. +..-.......+...|.+++|..++..- .+ ....+...-
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 444443321 1 123444444444432111 1111222233344556666666666322 22 222233333
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
+.-+..+...+++.+..++-.++...|
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 455556666667777666666666654
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.1e-06 Score=46.90 Aligned_cols=33 Identities=39% Similarity=0.753 Sum_probs=20.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCC
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (480)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=7.1e-06 Score=46.30 Aligned_cols=33 Identities=42% Similarity=0.924 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=0.00018 Score=54.34 Aligned_cols=102 Identities=18% Similarity=0.080 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT--QNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 173 (480)
++......+.+.|++++|.+.|+.+....+. ....+..+...+.+.|+++.|.+.|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555556666666666655544331 1334445555555555566666555555543211 1123344444
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCCh
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDS 200 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (480)
.++...|+.++|...++++....+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 555555555555555555555433333
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=8.7e-05 Score=67.82 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
+...+..+++.+....+.+.+..++-+... ....-+.|..++++.|...|..+++..+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444555555555555555555555555544 11112223345666666666666666666655556666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
+..+.+.|++..|.++..+|...+...++.|+.-.+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666665544444444554444444444
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.0001 Score=64.91 Aligned_cols=130 Identities=11% Similarity=0.107 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR-VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
.+|..++....+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|..+|+...+. ++.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3566677777777777777777777765544555666655555344 45555577777776654 355666677777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCCh---hhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDS---KTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
.+.++.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777766433332 3566666666666666666666666655
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=9.1e-06 Score=45.47 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=19.6
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC
Q 011652 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (480)
.+|+.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1.3e-05 Score=44.88 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=0.00014 Score=52.22 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
|..+...+...|++++|...++......+.+...+..+...+...+++++|.+.++...+.. +.+..++..+..++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444555555666666666666555544444555555555555666666666665555543 23334455555555555
Q ss_pred CChhhHHHHHHHhh
Q 011652 180 KNVRKAQEIFDCMK 193 (480)
Q Consensus 180 ~~~~~a~~~~~~~~ 193 (480)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555543
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.00 E-value=0.00017 Score=65.96 Aligned_cols=122 Identities=9% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
+.+.+......+++.+....+++.+..++.+.... ..--..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33555556666666666666666676666666541 112234445677777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (480)
++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 777777777777777777777666665555555555555544443
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.99 E-value=0.00059 Score=60.34 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=63.7
Q ss_pred HHHhC-CChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHH
Q 011652 349 GLIGR-GETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMH-TFSVL 415 (480)
Q Consensus 349 ~~~~~-~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l 415 (480)
.|... |+++.|.+.|+++.+. .... ..++..+...+.+.|++++|.++|+++...-.. .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 6677777777766651 1111 234556667777777788887777776653211 1121 22333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhh
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEK--GIRPS--GETFGKLRKLLIK--EGREDVLKFLQEKMNLL 473 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~l 473 (480)
+-++...|+...|.+.+++.... ++..+ ......|+.++.. ...++.+..-++.+.+|
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 34555667777777777777643 23223 3345556666644 22355555555444443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00021 Score=62.88 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+|-.++...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4677788888888889999999999885432 234444444444 33356777799999998888888888888888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 9999999999999988765 2222 247888888888888888888888888764 34433333343
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00022 Score=51.14 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
+...+...|++++|...++.+.+... .+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 33444444455555555444443321 122334444444444455555555554444432 1122344444444445555
Q ss_pred HHHHHHHHHHHHh
Q 011652 460 EDVLKFLQEKMNL 472 (480)
Q Consensus 460 ~~~a~~~~~~~~~ 472 (480)
++.|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555444433
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=0.00044 Score=63.21 Aligned_cols=88 Identities=10% Similarity=-0.041 Sum_probs=51.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
.+...|+++.|+..|+++.+..+.+...|..+..+|...|++++|...++++..... .+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 344556666666666666655555556666666666666666666666666655432 1445555556666666666666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 666666655
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00059 Score=51.45 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLIN 417 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~ 417 (480)
+..+...+...|++++|.+.+..+....+.+ ...+..+..++.+.|++++|.+.++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444555555566655555555422221 334445555666666666666666655543211 11334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 011652 418 GLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~ 438 (480)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555666666666666666554
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00034 Score=49.94 Aligned_cols=79 Identities=13% Similarity=0.325 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLKRF-IPSMHTFSVLINGLCDKG--------IVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~ 448 (480)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666999999999999999999 899999999999887653 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 011652 449 KLRKLLIK 456 (480)
Q Consensus 449 ~l~~~~~~ 456 (480)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988876
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.91 E-value=0.00095 Score=51.56 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (480)
-.+...+...|++++|.++|+.+....+.+..-|..|.-++-..|++++|...|......++. |+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 334444566777777777777777766677777777777777777777777777777766643 6677777777777777
Q ss_pred ChHHHHHHHHHHHHc
Q 011652 424 IVSDSCVLLEDMIEK 438 (480)
Q Consensus 424 ~~~~A~~~~~~~~~~ 438 (480)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777776643
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00025 Score=60.14 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=69.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
-..+.+++.+|+..|.+.++.... |.+.|..-..+|.+.|..+.|++-.+..+...+....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 355667777888888777776333 5666777777777788887777777777766666667777777788878888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 011652 394 FKVWKYMKLKRFIPSMHTFSV 414 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~ 414 (480)
.+.|++..+.. |+..+|-.
T Consensus 169 ~~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHHhhhccC--CCcHHHHH
Confidence 87777777644 55555543
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.018 Score=51.38 Aligned_cols=277 Identities=11% Similarity=0.017 Sum_probs=146.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (480)
..+-+..++..|+..+.......+.+...|..-...+...|++++|.--.+.-.+.. +-......-.-.++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 344555566666666666665555445555555555555555555554443333321 1111223333333333444444
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC-CCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhh
Q 011652 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIM-VDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~ 262 (480)
|.+.++.-. .+ ....++..++...... -+|...++..+ ..++...|++++|...-..+.
T Consensus 136 A~~~~~~~~--------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 136 AEEKLKSKQ--------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHHhhhhh--------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 444443110 00 1111222222222111 11333333332 245556777777777766666
Q ss_pred hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------HHHHHHHHHcCCHhHHHHHHH
Q 011652 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY-------------NALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~~~~~~a~~~~~ 329 (480)
+.+ ..+......-..++.-.++.+.+...|++....+ |+...- ..=..-..+.|.+..|.+.+.
T Consensus 197 kld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 197 KLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred hcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 543 2222222222233445567777777777766543 332211 111223467788899999998
Q ss_pred HHHhCC---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 330 DMNSKG---VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 330 ~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
+.+... ..|+...|.....+..+.|+.++|+.--+...+..+.-...|..-..++...+++++|.+-++...+..
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 887652 344555666666777888999999888888776333334455555666777888888888888877653
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00038 Score=49.75 Aligned_cols=76 Identities=26% Similarity=0.468 Sum_probs=45.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKAN--------KFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-..+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666555432 2334556666676666777777777766
Q ss_pred HHHHh
Q 011652 348 NGLIG 352 (480)
Q Consensus 348 ~~~~~ 352 (480)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
No 162
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.83 E-value=0.022 Score=51.41 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF-SVLIN 417 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 417 (480)
..|...+++..+...++.|..+|-++.+ + ..+++.++++++..++. |+..-|.++|+.-..+- ||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 4566677777777888888888888887 3 66777888888887764 67778888887654432 454444 44566
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 418 GLCDKGIVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..-++-..|..+|+....+ +..+ ...|..++..-..-|+...+..+-+++..+-+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 667778888888888866543 2222 56788888888888888888887777766543
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.0085 Score=51.42 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=24.4
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhH---HHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTY---SILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
...|++++|.+.|+.+....|-+.... -.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544333222222 23344445555555555555555543
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00066 Score=62.08 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (480)
..+...|+++.|++.|++..+.++.+...|..+..++...|++++|+..++.+.+.. +.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 444566677777777777776666666666666777777777777777777766654 3455566666666667777777
Q ss_pred HHHHHHHhhcCCCCChh
Q 011652 185 AQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~ 201 (480)
|...|++.....+.+..
T Consensus 89 A~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 89 AKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHhCCCCHH
Confidence 77777666654333333
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.79 E-value=0.0012 Score=51.02 Aligned_cols=97 Identities=9% Similarity=0.065 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
....-.+...+...|++++|..+|+.+...++-+...|..|.-.+-..|++++|+..|......+ +.++..+..+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 33444555666778888888888888888888778888888888888888888888888887776 56777777788888
Q ss_pred HccCChhhHHHHHHHhhc
Q 011652 177 CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~ 194 (480)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887665
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.04 Score=52.65 Aligned_cols=123 Identities=9% Similarity=-0.068 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHhcCCCCCH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIM-------RKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
|.+..|..+.......-.++.|+..|-+...- |+.-..-+..+. ..-+--|.+++|.++|-.+-.++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 78899999998888888888888888765432 111111111111 11223488999999987776543
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcC--CCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
..+..+.+.|++-...+++..-..+ ...-...|+.+...+.....|++|.+.|..-
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2456677778887776666543321 1122356777777777777777777776543
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=5.7e-05 Score=52.84 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~ 434 (480)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.3e-05 Score=41.56 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=15.8
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0026 Score=51.66 Aligned_cols=83 Identities=10% Similarity=-0.036 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
.+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444555555555544443221111 233444444455555555555555544443333344444444444
Q ss_pred hcCCC
Q 011652 211 GKDPN 215 (480)
Q Consensus 211 ~~~~~ 215 (480)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.011 Score=52.35 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILA-----DVA-MYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
..+...+.+.|++++|.++|+++....... +.. .+-..+-++...||...|...+++....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334445555555555555555554322111 111 1112222344455666666666655543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0035 Score=60.01 Aligned_cols=142 Identities=12% Similarity=0.063 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHHHc--C---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhC--------CChHHHHHHHHH
Q 011652 300 GILADVAMYNALIGAFCKA--N---KFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGR--------GETDEAYRVFRR 365 (480)
Q Consensus 300 ~~~~~~~~~~~li~~~~~~--~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 365 (480)
+.+.+...|...+++.... + +...|..+|++..+. .|+ ...+..+..++... .+...+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455677777777764432 2 266788888888876 343 23344333333221 112333444444
Q ss_pred HHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 366 MIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 366 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
... ..+.++..|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.++++... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 333 245566788888777777899999999999998876 68888888999999999999999999988864 444
Q ss_pred HHHH
Q 011652 444 GETF 447 (480)
Q Consensus 444 ~~~~ 447 (480)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4444
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.70 E-value=9.2e-05 Score=51.79 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011652 353 RGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.|+++.|+.+++++.+..+ ++...+..+..+|.+.|++++|..+++. ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566677777777666322 1344455567777777777777777766 22211 123444445666777777777777
Q ss_pred HHHH
Q 011652 431 LLED 434 (480)
Q Consensus 431 ~~~~ 434 (480)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0041 Score=59.62 Aligned_cols=140 Identities=9% Similarity=-0.030 Sum_probs=105.0
Q ss_pred CCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 011652 335 GVAPNSRTCNIILNGLIGR-----GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG--------ELEKAFKVWKYMK 401 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~ 401 (480)
+.+.+...|...+++.... ++...|..+|+++.+..|.+...|..+..++.... +...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456778888888875432 33778999999999977778888877666554432 2334444444433
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 402 LK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 402 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.. ....+...|..+.......|++++|...++++.+.+ |+...|..+.+.+...|+.++|.+.+++...+++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 32 123355778877777777899999999999999865 68888999999999999999999999999988865
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0033 Score=51.01 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
..+..+...+...|++++|...+++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3455555566666777777777766665432221 24555666666667777777777776666555556666666666
Q ss_pred HHhcCCHHHHH
Q 011652 384 FCQGGELEKAF 394 (480)
Q Consensus 384 ~~~~g~~~~a~ 394 (480)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66666654443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.001 Score=53.72 Aligned_cols=79 Identities=9% Similarity=-0.084 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ--NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
.|..+...+...|++++|+..|+........+ ...++..+..++...|++++|...+++.....+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444445555555555555555554432111 1234555555555555555555555555543333334444444444
Q ss_pred h
Q 011652 211 G 211 (480)
Q Consensus 211 ~ 211 (480)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 3
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6.8e-05 Score=40.76 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555554443
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.03 Score=48.06 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF---CIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
++..+-.....+.+.|++++|.+.|+.+....|.+..+- -.++.++.+.+++++|...+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333333444455566777777777777766655333322 34455666677777777777766654
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.039 Score=49.28 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHH
Confidence 344444555555444433332 24555555555555555555554443221 123344555555555555555
Q ss_pred HHHHHHHH
Q 011652 392 KAFKVWKY 399 (480)
Q Consensus 392 ~a~~~~~~ 399 (480)
+|..+...
T Consensus 255 eA~~yI~k 262 (319)
T PF04840_consen 255 EASKYIPK 262 (319)
T ss_pred HHHHHHHh
Confidence 55555444
No 179
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.65 E-value=0.056 Score=50.91 Aligned_cols=352 Identities=11% Similarity=0.096 Sum_probs=180.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..+|.---...+.+.+...++.+...-|.-..-|......-.+.|..+.+.++|++.+. |++.+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 45556666666555555567777777777766665555666666777788888888888888876 46777777777665
Q ss_pred HHH-ccCChhhHHHHHHHhhc---CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH---h
Q 011652 175 ALC-KSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC---K 247 (480)
Q Consensus 175 ~~~-~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 247 (480)
.+. ..|+.+.....|+.... ..-.+...|...|..-..++++.....+|++.++. | ...|+....-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHh
Confidence 444 45677777778887766 12234566778888777888888888888888763 2 122222222221 1
Q ss_pred c------CCHHHHHHHHHHhhhC-C---CCccHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011652 248 A------GRVDEALGIVKSMDST-V---CRPTSFIYSVLVHTYG-VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316 (480)
Q Consensus 248 ~------g~~~~a~~~~~~~~~~-~---~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 316 (480)
. ...+++.++-...... . ..+.......-+.-.. ..+..+++.....+.. ..--..+.
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence 1 1222222222221110 0 0000000111000000 0011111111111100 00001122
Q ss_pred HcCCHhHHHHHHHHHHhCC---C----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 011652 317 KANKFKNVYRVLKDMNSKG---V----APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~---~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (480)
...........++.-...- + .++..+|...+.--...|+.+.+.-++++..-.+..-...|--.++.....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 2222233333333333221 1 12345566666666777777777777777665444444555555555555677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 011652 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF-GKLRKLLIKEGREDVLK 464 (480)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~ 464 (480)
.+-|..++....+--++-.+.+-..-....-..|+++.|..+++...+.- |+.... ..-+....+.|..+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 77777766665543222122221111222334467777777777776542 443322 22344555666666666
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.64 E-value=0.0024 Score=47.54 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCC---ChhhHHHHHHHhhcC
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGKD 213 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 213 (480)
.++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..++++....++. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555543332 223344445555555555555555555443222 222222233344455
Q ss_pred CChhHHHHHHHHHH
Q 011652 214 PNLPRAREIFREMV 227 (480)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (480)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0037 Score=53.52 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChhhHHHHHH
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK---NVRKAQEIFD 190 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~ 190 (480)
+....-++.-...+|.|.+.|..|...|...|+++.|..-|....+.. ++++..+..+..++.... ...++..+|+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333444444455666777777777777777777777777777776654 456666666655544332 3556777777
Q ss_pred HhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
++....+.|+.+...|...+...|++.+|...|+.|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 777766667777777777777777777777777777765
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0016 Score=52.66 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+..+...+...|++++|...+++.......+ ...++..+...+...|+.++|...++......+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444445555555555555555554432111 1124444555555555555555555555543333334444444444
Q ss_pred H
Q 011652 385 C 385 (480)
Q Consensus 385 ~ 385 (480)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 3
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0042 Score=53.18 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
|...|..|...|...|+.+.|...|.+..+..++++..+..+..++.... ...++..+|+++...+.. |+.+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 77888888899999999999999999888877888888888887776543 355788888888887643 67777778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
...+...|++.+|...|+.|++..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC
Confidence 888888899999999999988754
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.61 E-value=0.05 Score=49.34 Aligned_cols=386 Identities=10% Similarity=0.112 Sum_probs=198.5
Q ss_pred HHHHHHHHHhhcCC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHhCCHHHHHH
Q 011652 79 LAFCFFKWAEKQQN---YEHS-VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK--YARVQKVEEAVY 152 (480)
Q Consensus 79 ~a~~~~~~~~~~~~---~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~ 152 (480)
+|.++|-.+..... +... ....+.++++|. .++.+.....+....+..+. ..|..+..+ +-+.+.+.+|.+
T Consensus 24 esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~--s~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 24 ESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK--SAYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhhHHHHHH
Confidence 78888877754332 1112 223455666665 45577777777776665542 234444443 347788999999
Q ss_pred HHHHHHhc--CCCCC---HH---------HHHHHHHHHHccCChhhHHHHHHHhhcC-----CCCChhhHHHHHHHhhcC
Q 011652 153 TFNVMQKY--GVTQN---LA---------AFNGLLSALCKSKNVRKAQEIFDCMKDR-----FIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 153 ~~~~~~~~--~~~~~---~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 213 (480)
.+....++ +..+. .. .-+..+.++...|.+.++..+++++... ...+..+|+.++-.+++.
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 88777665 33332 11 1145567778899999999999998762 336888888755554331
Q ss_pred --------CC-------hhHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCccH
Q 011652 214 --------PN-------LPRAREIFREMVDT------GCNPDIVTYGIMVDVLCKAG--RVDEALGIVKSMDSTVCRPTS 270 (480)
Q Consensus 214 --------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~ 270 (480)
.. ++.+.-+..++... .+.|.......++....-.. +..--.++++.....-+.|+.
T Consensus 181 YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~ 260 (549)
T PF07079_consen 181 YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNY 260 (549)
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCch
Confidence 11 12222222333211 13333333334433322211 111112222222233333332
Q ss_pred HH-HHHHHHHhhccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-------
Q 011652 271 FI-YSVLVHTYGVENRIEDAVDTFLEMEKNGILA----DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP------- 338 (480)
Q Consensus 271 ~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------- 338 (480)
.. ...+..-+.. +.+++..+.+.+....+.+ =..++..++....+.++...|.+.+.-+.-..+..
T Consensus 261 ~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kll 338 (549)
T PF07079_consen 261 DLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLL 338 (549)
T ss_pred hHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 21 1122222222 3333333333332211100 12344555555555555555555544433221000
Q ss_pred ------------ChhhH------------------------HHHHH---HHHhCCC-hHHHHHHHHHHHhcCCCCHHHHH
Q 011652 339 ------------NSRTC------------------------NIILN---GLIGRGE-TDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 339 ------------~~~~~------------------------~~l~~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
|...+ ..++. -+-+.|. -++|+.+++.+.+-.+.|...-+
T Consensus 339 ls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n 418 (549)
T PF07079_consen 339 LSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN 418 (549)
T ss_pred cCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH
Confidence 00001 11111 1223344 77888888888774455554444
Q ss_pred HHHH----HHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 379 MMIK----MFCQ---GGELEKAFKVWKYMKLKRFIPS----MHTFSVLING--LCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 379 ~l~~----~~~~---~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
.+.. +|.+ ...+.+-.++-+-+.+.|++|- ...-|.+..+ +...|++.++.-.-..+.+ +.|++.
T Consensus 419 ~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~ 496 (549)
T PF07079_consen 419 IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQ 496 (549)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHH
Confidence 3332 2322 2344444555555556777763 2334444443 4567999988877666665 678999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+|..+.-++....++++|..++.++.
T Consensus 497 ~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 497 AYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999888889999999999988764
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=0.00035 Score=46.52 Aligned_cols=52 Identities=12% Similarity=0.313 Sum_probs=30.6
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
..|++++|.++|+.+....|.+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666555556666666666666666666666666655554
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.013 Score=52.24 Aligned_cols=294 Identities=11% Similarity=0.038 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
.......+.+..++..|+..+...++.. +.+...|..-...+...|++++|.--.+.-.+..+-......-.-+++...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3344567777888888888888888875 444555666566677777777776665554442222233444444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccHHHHHHH-HHHhhccCCHHHHHH
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVL-VHTYGVENRIEDAVD 291 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~ 291 (480)
++..+|.+.++ +...+ ....++..++.+..... +|...++..+ ..++...|++++|..
T Consensus 131 ~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 55555554444 11111 11222333333322221 2333444433 456778899999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHhHHHHHHHHHHhCCCCCChhhHH---HHH----------HHHHhCCCh
Q 011652 292 TFLEMEKNGILADVAMYNALIG--AFCKANKFKNVYRVLKDMNSKGVAPNSRTCN---IIL----------NGLIGRGET 356 (480)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---~l~----------~~~~~~~~~ 356 (480)
+-..+.+.. ....+...++ ++.-.++.+.+...|++.+..+ |+...-. ... +-..+.|++
T Consensus 191 ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 887777652 2223334443 3445778899999999888763 3332211 111 224678999
Q ss_pred HHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHH
Q 011652 357 DEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT--FSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 357 ~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~ 430 (480)
..|.+.+.+.+. ...++...|........+.|+.++|+.--++....+ +... |..-..++...+++++|.+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 456777888888888999999999999988887753 2222 3333344556688999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 011652 431 LLEDMIEKGIRP-SGETFGKLRKLLIK 456 (480)
Q Consensus 431 ~~~~~~~~~~~p-~~~~~~~l~~~~~~ 456 (480)
-+++..+..-.+ ...++.....++-+
T Consensus 343 d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 343 DYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHH
Confidence 999887643222 23445444444443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.57 E-value=0.00036 Score=46.45 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=35.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+.|++++|+++|+.+....|.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566777777777776666666666667777777777777777777766664
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.01 Score=46.80 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCCHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNLAAFNGL 172 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 172 (480)
|++.--..+...+.+.|+..+|...|++....-. .+......+.++....+++..|...++.+.+... ..++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555556677777778888888888877655433 6777777777777777888888887777766421 0122234445
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 011652 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (480)
.+.+...|....|+.-|+....- -|+...-......+.+.|+.+++..-+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 66777777777777777776652 234433333344445556555544433
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.54 E-value=0.00069 Score=45.19 Aligned_cols=65 Identities=18% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhh
Q 011652 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMNLLV 474 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~l~ 474 (480)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++.+.| ++++|.+.+++..+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4455666666666666666666666666543 223445555666666666 5666666666665554
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0022 Score=54.57 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=61.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
-+.+.++|++|+..|.+..+..|.+...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34566777777777777777776667777777777777777777777766666654 33455677777777777777777
Q ss_pred HHHHHHhhcC
Q 011652 186 QEIFDCMKDR 195 (480)
Q Consensus 186 ~~~~~~~~~~ 195 (480)
.+.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 7777666654
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00068 Score=44.59 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+...+.+.|++++|...|+.+.+..+.+...+..+..++...|++++|...|+.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777777777777777777777777777777654
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.1 Score=50.01 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
..|..|.+-....|.++.|.+.--.+.+. ++-|....|..+.-+-|....+.-.-+.|-+
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 44455555566678888887765555432 4556777787776655554444333333333
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.01 Score=44.21 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=4.7
Q ss_pred CCHHHHHHHHHHH
Q 011652 284 NRIEDAVDTFLEM 296 (480)
Q Consensus 284 g~~~~a~~~~~~~ 296 (480)
|+.++|+.+|++.
T Consensus 15 G~~~~Ai~~Y~~A 27 (120)
T PF12688_consen 15 GREEEAIPLYRRA 27 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0037 Score=50.80 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 011652 372 ADADTYTMMIKMFCQ-----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK----------------GIVSDSCV 430 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~ 430 (480)
.+..+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.|+..+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344444444444442 244444445555555555555555555555544321 13455777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 431 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888766554
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.0022 Score=56.86 Aligned_cols=131 Identities=11% Similarity=-0.052 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIK-----LC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK----LKRFI-PSMHT 411 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~ 411 (480)
|..+-+.|.-.|+++.|+...+.-.. +. ......+..+..++.-.|+++.|.+.++... +.|-. ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444445555666666655443322 11 1123445556666666666666666665432 22211 12233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIE----K-GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...|..+|.-..+++.|+.++++-+. . +..-....+-+|..++...|..++|..+.+.-.++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44455555555666666665554321 1 11223445556666666666666666666655544
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00089 Score=44.01 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...+.+.|++++|.+.|+++.+.... +...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666666655421 445555566666666666666666666654
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.33 E-value=0.0012 Score=44.06 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHh
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQK 159 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 159 (480)
++..|..+...+...|++++|+..|++..+.++.+...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777766666667777777777777 57777777766655
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.31 E-value=0.15 Score=48.57 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 192 (480)
+.+.-+++++++|-.|+... +...++-.|.+.+|.++|.+-
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 33444567777776676543 344556677888888777654
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.038 Score=46.17 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+-.....+...|++.+|.+.|+.+....| ....+...++.++-+.|+++.|...++.+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344555667777777777777776544 34455566666777777777777777776654
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0062 Score=49.56 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=62.9
Q ss_pred CChhhHHHHHHHhhc-----CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHH
Q 011652 198 PDSKTYSILLEGWGK-----DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272 (480)
Q Consensus 198 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (480)
.+..+|..+++.+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366666666666653 34555556666666666666666666666666554 3221 1111111111
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011652 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
-.-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0112456678888888888888888888888888877664
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.028 Score=43.83 Aligned_cols=87 Identities=13% Similarity=-0.029 Sum_probs=64.3
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
+...|++++|..+|+-+..-.+.+..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 456788888888888777766667777777777777788888888888776655432 5555666777788888888888
Q ss_pred HHHHHHHH
Q 011652 430 VLLEDMIE 437 (480)
Q Consensus 430 ~~~~~~~~ 437 (480)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88887776
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.096 Score=44.00 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=69.1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH-----
Q 011652 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL----- 347 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~----- 347 (480)
.+.++.++.-.|.+.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555556666666666666665444455556666666666666666666666554432222333332222
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
..+.-.+++..|...+.++....+.++...|.-.-+..-.|+...|.+.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22334455555555555555544445555444444444455566666666655554
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.069 Score=42.30 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC--CCCHHHHHH
Q 011652 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTM 379 (480)
Q Consensus 302 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 379 (480)
.|+...--.+..+....|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+-. ..++.+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 455555555666666777777777777666654344455566666666666677777777666665511 112223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
+.+.+...|.+..|+..|+.....- |+...-......+.++|+.+++..-+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5566666677777777776666543 3433333344445566655555443333
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.22 E-value=0.0035 Score=55.65 Aligned_cols=282 Identities=15% Similarity=0.094 Sum_probs=143.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHhh------cCCCCChhhHHHHHH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLA----AFNGLLSALCKSKNVRKAQEIFDCMK------DRFIPDSKTYSILLE 208 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~ 208 (480)
.-+++.|+....+.+|+..++.| ..|.. +|..|..+|.-.+++++|++....=. ....-...+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45788899999999999998887 33433 45666677777788888877543211 111112233344444
Q ss_pred HhhcCCChhHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 209 GWGKDPNLPRAREIFREMV----DTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
.+--.|.+++|.-.-.+-+ +.|-. .....+..+.+.|...|+.-.... -...|-.+...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 5555566666655433321 22211 112233334444444332110000 000010111000
Q ss_pred CCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhC
Q 011652 284 NRIEDAVDTFLEME----KNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMNS----KGVA-PNSRTCNIILNGLIGR 353 (480)
Q Consensus 284 g~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~ 353 (480)
..++.|.+.|.+-. +.|- -.-...|..+...|.-.|+++.|+...+.-.. -|-. .....+..+.++++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01223333333211 1110 01123455555556666777777665543222 1211 1223556667777777
Q ss_pred CChHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhc
Q 011652 354 GETDEAYRVFRRMIK------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL----K-RFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~ 422 (480)
|+++.|.+.++.... .-........+|...|.-..++++|+.++.+-.. . +..-....+..|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 788888777766543 1223344555667777777777777777664321 1 1112456677788888888
Q ss_pred CChHHHHHHHHHHH
Q 011652 423 GIVSDSCVLLEDMI 436 (480)
Q Consensus 423 g~~~~A~~~~~~~~ 436 (480)
|..++|+.+.+.-+
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888877766554
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.099 Score=43.92 Aligned_cols=131 Identities=9% Similarity=0.006 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCC-----HHHHHHH
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEAD-----ADTYTMM 380 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~l 380 (480)
+.+.++..+...|.+.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|++..+ ....+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666666777777778888888776666777778888888888888888888887665 22222 2333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455667777888888777766533 4455555444455567888888888888764
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.14 Score=45.77 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++-.++... . -++.-|...+.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 3466666777888999988888876654 58889999999999999999988886543 1 2457899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
.+.|...+|..+..++ ++ ..-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988872 21 3456777888888888766543
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.021 Score=44.86 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETFG 448 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 448 (480)
+...++..+...|++++|..+.+.+....+. +...|..++.+|...|+..+|.+.|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777778888999999998888876533 77888888999999999999998888775 348888877643
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.048 Score=45.54 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011652 381 IKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+.|.+.|.+..|..-++.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.15 E-value=0.006 Score=47.95 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----hcCCCCCHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ-----KYGVTQNLAAF 169 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 169 (480)
+...++..+...|+++.|..+.+.+....|.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455566667778888888888888888888888888888888888888888888887663 34777776653
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.013 Score=50.71 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNGLLS 174 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~ 174 (480)
|...+..+.+.|++++|...|+.+....|.+ +.++..+...|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555555544411 3444555555555555555555555554321 0111222333333
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011652 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~ 194 (480)
++...|+.++|..+|+.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555444
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.31 Score=46.49 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
...-++++.+.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 3344566667776666543 334555667777777776543
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.04 E-value=0.24 Score=45.10 Aligned_cols=376 Identities=10% Similarity=0.053 Sum_probs=212.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.-+++-+.+...+ .|..+|-.+|.-+...+..++..+++++|...-+.-+.+|..-+.+-...+++.....+|.+..
T Consensus 27 D~lrLRerIkdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 27 DELRLRERIKDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred hHHHHHHHhhcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3457888886654 4899999999999999999999999999988877777889999998888999999999999888
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChh------hHHHHHHHhhc--CCCC-ChhhHHHHHHHh---hcCCCh------hHHH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVR------KAQEIFDCMKD--RFIP-DSKTYSILLEGW---GKDPNL------PRAR 220 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~--~~~~-~~~~~~~l~~~~---~~~~~~------~~a~ 220 (480)
... .+...|...+.-..+.+..- ...+.|+-... .+.| ....|+..+..+ -..|.+ +...
T Consensus 104 ~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 764 45677777776554433211 11223333322 3333 444566555543 334444 4455
Q ss_pred HHHHHHHHcCCCC------ChhhHHHHHHHHH-------hcCCHHHHHHHHHHhhh--CCC----CccHHHHHH------
Q 011652 221 EIFREMVDTGCNP------DIVTYGIMVDVLC-------KAGRVDEALGIVKSMDS--TVC----RPTSFIYSV------ 275 (480)
Q Consensus 221 ~~~~~~~~~~~~~------~~~~~~~l~~~~~-------~~g~~~~a~~~~~~~~~--~~~----~~~~~~~~~------ 275 (480)
..|.+++..-+.- |-..|..=++-.. ...-+-.|...++++.. .|. +.+..+++-
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 5666666421110 1111111111100 01123455555555532 121 112222221
Q ss_pred -----HHHHhhc-----cCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011652 276 -----LVHTYGV-----ENRI--EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 276 -----l~~~~~~-----~g~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
.|+--.. .|+. ....-++++.... +.-....|----.-+...++-+.|........+. .|+ .
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L 335 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---L 335 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---h
Confidence 2221111 1111 1222233333321 1123333433333445566777777666554332 222 1
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHHHh------------------------------cCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 344 NII-LNGLIGRGETDEAYRVFRRMIK------------------------------LCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 344 ~~l-~~~~~~~~~~~~a~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
... -..|.-.++.+.....|+.... ....-..+|...+....+...++.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Confidence 111 1122222222222222222111 001123456778888888889999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 011652 393 AFKVWKYMKLKR-FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-FGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 393 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
|.++|-+..+.+ +.+++..+++++..++. |+..-|..+|+--+.. .||... ....+..+.+-++-+.|+.+++
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999999888 56788889999987765 7888999999876653 344444 3456677778888888888887
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.02 E-value=0.066 Score=41.88 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
.-+...|++++|..+|.-+.-.++. +..-+..|..++...+++++|...|.......+.|+..+-....+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3456678888888888887765444 555667777777778888888888887776445666666677888888888888
Q ss_pred HHHHHHHHHhC
Q 011652 393 AFKVWKYMKLK 403 (480)
Q Consensus 393 a~~~~~~~~~~ 403 (480)
|...|....++
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888888773
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.024 Score=49.08 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=40.1
Q ss_pred HhCCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCh
Q 011652 351 IGRGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~ 425 (480)
.+.|++++|...|+.+.+..|.+ +..+..+..+|...|++++|...|+.+...-. +.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33445555555555554432222 23444445555555555555555555543210 01123333344444455555
Q ss_pred HHHHHHHHHHHH
Q 011652 426 SDSCVLLEDMIE 437 (480)
Q Consensus 426 ~~A~~~~~~~~~ 437 (480)
++|..+|+++++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.96 E-value=0.007 Score=40.78 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|...|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555554322 444444455555555555555555555554
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.87 E-value=0.0096 Score=40.10 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
..+.+.++++.|.+.++.+...+|.++..+......+...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777888888888888887777777777777778888888888888887777654
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.81 E-value=0.35 Score=43.27 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=78.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcC
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 388 (480)
..++.+.|+..++-.+++.+-+....|+ . ...|.+...-+.+..-+++..+ .-+.+......+.++-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~--i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPD--I----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChH--H----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 4577888888888888888887744443 2 2334433334444545555444 33445566777778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHc
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 438 (480)
++..|..--+..... .|....|..|...-... |+-.++...+.+....
T Consensus 344 e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888877766666553 37777887777765444 8888888888877754
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.75 E-value=0.42 Score=43.37 Aligned_cols=167 Identities=12% Similarity=0.070 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCChhhHH
Q 011652 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAFCK---ANKFKNVYRVLKDMNSKGVAPNSRTCN 344 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 344 (480)
.+...++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|..++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455567888888999999988887651 11122222334445666 788899999988866666667788888
Q ss_pred HHHHHHHh---------CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HH-HHhCCCC-
Q 011652 345 IILNGLIG---------RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL----EKAFKVW---KY-MKLKRFI- 406 (480)
Q Consensus 345 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~---~~-~~~~~~~- 406 (480)
.+...|-. ....+.|...|.+.-+.. |+..+--.++..+...|.- .+..++- .. +.++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88776632 123566666666655422 4433323333333333332 2233333 11 1122222
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 407 --PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 407 --p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.+.-.+..++.++.-.|+.++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23334455666777777777777777777754
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.43 Score=42.75 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=172.2
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHH--hhcCCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG--WGKDPNLPRAREIFREMVDTGCNPDIV--TYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 253 (480)
-.|+-..|.++-.+.......|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35666666666666554333344444444433 33468888888888888752 2211 12223333346778888
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH--HH-cCCHhHHHHH
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAM--YNALIGAF--CK-ANKFKNVYRV 327 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~--~~-~~~~~~a~~~ 327 (480)
|..+-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+- .. ..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 877777665542 3335567778888888888888888887765432 2233221 11222211 11 2345555555
Q ss_pred HHHHHhCCCCCChhh-HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 011652 328 LKDMNSKGVAPNSRT-CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RF 405 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 405 (480)
-.+..+ +.||..- -.....++.+.|+..++-.+++.+.+. .|.+..+.. ..+.+.|+ .+..-++..... ..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-EPHPDIALL--YVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhc
Confidence 555444 3555432 333456788999999999999999873 455544332 23344454 343333333221 12
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhhCCC
Q 011652 406 IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 406 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+| +......+..+-...|++..|..--+.... ..|....|..+.+.-.. .|+-.++..++-+..+....|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 23 556777778888889999888877776654 46788888877776655 499999999988877665544
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.65 E-value=0.42 Score=42.18 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.++..++.+|...+.. ++|..+++.+...... .+.++..-+..+.+.++.+.+.+.+.+|..........+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 4566677777776654 4455566666544222 24455556666666888888888888888854434444555555
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH-H---HHHHhcCC------hHHHHHHHHHHHH-cCCCCCHHHH
Q 011652 383 MF---CQGGELEKAFKVWKYMKLKRFIPSMH-TFSVL-I---NGLCDKGI------VSDSCVLLEDMIE-KGIRPSGETF 447 (480)
Q Consensus 383 ~~---~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~---~~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~~ 447 (480)
.+ ... ....|...+..+....+.|... ....+ + ......++ .+....++....+ .+.+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44 333 3345556665555444444443 11111 1 11112111 3344444443322 2334444443
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHH
Q 011652 448 GKL-------RKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 448 ~~l-------~~~~~~~g~~~~a~~~~~~~ 470 (480)
.++ ...+.+.+++++|.++++-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 333 34566788999999998843
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.64 E-value=0.17 Score=48.36 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCChHHHH
Q 011652 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR--F-IPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
..+.+.|.+++..+.+..|.+..-.-.-.+.+...|++++|.+.|+...... . +.....+.-+...+.-.+++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3456667777777766555555444455566666777777777777554311 0 012234444556666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHhhh
Q 011652 430 VLLEDMIEKGIRPSGETFGKLRK-LLIKEGRE-------DVLKFLQEKMNLLV 474 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~~l~ 474 (480)
..|..+.+.. ..+..+|..+.. ++...|+. ++|.+++++...+.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 7777777543 234444443332 33346666 77777777766554
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.51 Score=42.88 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGV---ENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
+...++-.|....+++..+++.+.+.... +......-....-++.+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455557888899999999999998752 11122222344455666 8999999999999666666778888888
Q ss_pred HHHHHHH----c-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-hH---HHHHHHHHH---H--h---c
Q 011652 311 LIGAFCK----A-----NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE-TD---EAYRVFRRM---I--K---L 369 (480)
Q Consensus 311 li~~~~~----~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~~~~---~--~---~ 369 (480)
+...|-. . ...++|...|.+.-+. .|+...=-.++..+...|. .+ +..++--.+ . + .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8876643 1 1356777777766654 2443322122222222332 22 233333111 1 1 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
...+...+..++.++.-.|++++|.+..+.|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33566677889999999999999999999998763
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.0078 Score=41.20 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEK--GIR---PS-GETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.+++.+...|...|++++|+..|++.++. ... |+ ..++..+..++...|++++|.+++++..++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35556666666666666666666666532 111 11 334555666666777777777777666554
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.76 Score=44.82 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=86.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.....+.+--+..+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-+++-+..+ ++.-|...+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 3445566777777888899999988877765 5888888888899999999988877766543 245677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
.+|.+.|+.++|.+++.+.. +.. -...+|.+.|++.+|.++.-
T Consensus 752 e~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHH
Confidence 99999999999999887652 111 46678888888888776653
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.59 E-value=0.048 Score=41.11 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLIN 417 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~ 417 (480)
.|+..+..+++.+|+..|++..|.++.+.+.+. +++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555555555555555555555555554432 44444555555554
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.59 E-value=0.47 Score=41.89 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=70.1
Q ss_pred HhcCChhHHHHHHHHHHhCC-CCCHHHHHHHHHH-------HHHhC-CHHHHHHHHHHHHhc--------CCCCCH----
Q 011652 108 AKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRK-------YARVQ-KVEEAVYTFNVMQKY--------GVTQNL---- 166 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~-------~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 166 (480)
.+.|+++.|..++.++.... ..++.....+.+. ....+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56788888888888877654 3333333333322 23344 777777666655332 112222
Q ss_pred -HHHHHHHHHHHccCChh---hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 167 -AAFNGLLSALCKSKNVR---KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 167 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
.++..++.+|...+..+ +|.++++.+....+..+.++..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666665533 4555555555544444555656666666677777777777777754
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.55 E-value=0.13 Score=49.00 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC-CCCh------hhHHHHHHHhhc----CCChh
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDS------KTYSILLEGWGK----DPNLP 217 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~~l~~~~~~----~~~~~ 217 (480)
-..-+|.-+.+. +||. ...++....-.||-+.+++.+.+..+.. ...+ -.|...+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555543 3444 3345666666788888888777765511 1111 224444443333 45677
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHhhccCCHHHHHHHH
Q 011652 218 RAREIFREMVDTGCNPDIVTYGIM-VDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
.|.++++.+.+. -|+...|... .+.+...|++++|++.++...... .+.....+--+.-++...+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 888888888875 4666655443 356677889999999988754311 1122334445666778888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHHcCCH-------hHHHHHHHHHHh
Q 011652 294 LEMEKNGILADVAMYNALIG-AFCKANKF-------KNVYRVLKDMNS 333 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~-~~~~~~~~-------~~a~~~~~~~~~ 333 (480)
..+.+..-- +...|.-+.. ++...|+. ++|..+|.+...
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 998875322 3344443332 44556766 888888887654
No 228
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.54 E-value=1.2 Score=45.97 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
..|+.-+...++.-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 344444445555555555554443
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.52 E-value=0.42 Score=40.43 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
.+-.-+..-.+.|++++|.+.|+.+..+.| -...+...++-++-+.+++++|+..+++....-.......|...|.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333334445678999999999999988766 45666777777888889999999999888765322223345455555
Q ss_pred HHc-------cCChhhHHHHHHHh---hcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 176 LCK-------SKNVRKAQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 176 ~~~-------~~~~~~a~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
++. .+|...+...|..+ ..++|.+..+ ..|..-...+... =...=..+.+.|
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~----LA~~Em~IaryY 177 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA----LAGHEMAIARYY 177 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 442 22333333333333 3333322211 1111111111100 000012234566
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCccHH---HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMDSTVCRPTSF---IYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.+.|.+..|..-+++|.+. .+.+.. ..-.+..+|...|-.++|.+.-.-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 6666666666666666654 222222 233445566666666666665555444
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.36 Score=40.28 Aligned_cols=203 Identities=11% Similarity=0.098 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|.....+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. .--...|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666666777766655554421 011211111 112344555555555543 1123345555566777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------ADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 391 (480)
+|..+.|-..+++.-+. ....++++|++++++....+. .-...+....+.+++...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77766666555554331 223345555555555544111 11223444555666666666
Q ss_pred HHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 392 KAFKVWKYMKL----KRFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKG---IRPSGETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 392 ~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a 463 (480)
+|-..+.+-.. ..-.|+. ..|...|-.+....++..|.++++.-.+.+ -.-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 66555443221 1111222 334555555666667777777777644332 122345566666665 34666666
Q ss_pred HHHH
Q 011652 464 KFLQ 467 (480)
Q Consensus 464 ~~~~ 467 (480)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5543
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.50 E-value=0.009 Score=40.90 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+++.+...|...|++++|...|++..+. |-. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777766532 211 11 34566677777777777777777777653
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.088 Score=39.70 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE-KGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 458 (480)
...|+..+..+++.+|+..|++..|+++++...+ -+++.+..+|..|+.-+...-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4668999999999999999999999999999985 478888999999988766543
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.48 E-value=0.23 Score=37.01 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
...+..+...|+-+.-.++++.+.+...+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555555444444455555555555555555555555555555544
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.37 E-value=0.12 Score=39.46 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
...+-.-.....+.|++++|.+.|+.+..+-| -...+-..++.+|.+.+++++|...+++.++........-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33333445556678888888888888888766 456667778888888888888888888888764322223354455
Q ss_pred HHHHc
Q 011652 174 SALCK 178 (480)
Q Consensus 174 ~~~~~ 178 (480)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 55443
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.059 Score=49.50 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+...++.+..+|.+.|++++|+..|++..+..+.+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777776444444 34777777777777777777777777664
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.32 E-value=0.85 Score=41.84 Aligned_cols=120 Identities=11% Similarity=0.124 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHhCCCCC-ChhhHHH----HHHHHHh---CCChHHHHHHHHHHHh-cCCC----CHHHHHHHHHH--HH
Q 011652 321 FKNVYRVLKDMNSKGVAP-NSRTCNI----ILNGLIG---RGETDEAYRVFRRMIK-LCEA----DADTYTMMIKM--FC 385 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p-~~~~~~~----l~~~~~~---~~~~~~a~~~~~~~~~-~~~~----~~~~~~~l~~~--~~ 385 (480)
-++|..+++.+.+- .| |...-+. +=..|.+ ...+.+-..+-+-+.+ +.+| +...-|.|.++ +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67777777777663 22 2222222 1222222 2333344444333444 4444 33344445443 45
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 449 (480)
..|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++.+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 67999998876555554 569999999999999999999999999986 4677777654
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.14 Score=47.12 Aligned_cols=66 Identities=6% Similarity=-0.149 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+...|+.+..+|.+.|++++|+..|++..+.++.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999999999988888554 45999999999999999999999999875
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=1.2 Score=43.54 Aligned_cols=340 Identities=12% Similarity=0.115 Sum_probs=177.3
Q ss_pred hCCCCCCHHHHHHH-----HHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHh
Q 011652 56 QSGIRVSPEIVEDV-----LEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY---QIMWDLVNAMRT 125 (480)
Q Consensus 56 ~~~~~~~~~~~~~~-----l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~ 125 (480)
.-|++++.+.+.++ +.++...+. .|.++-.|+....+ ....+|.....-+.+..+. +.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45777777766543 444444444 68888888743322 1245666666666555322 222223333322
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh
Q 011652 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ----NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (480)
. ......|..+.+.....|+++.|..+++.=...+... +..-+...+.-+...|+.+-...++-.+.... +..
T Consensus 503 ~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--~~s 579 (829)
T KOG2280|consen 503 K-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--NRS 579 (829)
T ss_pred c-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHH
Confidence 1 2334457777777778888888888776533222110 11112233334444555555444444443210 111
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--Hhh----hCCCCccHHHHHH
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK--SMD----STVCRPTSFIYSV 275 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~ 275 (480)
.+.. -..+...|..+|.+..++. |..+ +-..|....+. ++..-+. ... ..+..|+. ..
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~l---k~ 643 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPAL---KT 643 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhH---HH
Confidence 1111 1223445556665554421 1111 11122222222 2221111 100 01222222 22
Q ss_pred HHHHhhccCCH----------HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHH
Q 011652 276 LVHTYGVENRI----------EDAVDTFLEME-KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344 (480)
Q Consensus 276 l~~~~~~~g~~----------~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 344 (480)
....+.+.... ..-+++.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.+ -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 23333333221 11122222222 12222233344555566777888888888877665 46888898
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (480)
.-+.+++..+++++-+++-+... ++.-|..++.+|.+.|+.++|.+++.+.... . -...+|.+.|+
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~ 785 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGD 785 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh------H---HHHHHHHHhcc
Confidence 88999999999988877766543 2566778889999999999999988765321 1 56778888999
Q ss_pred hHHHHHHHHH
Q 011652 425 VSDSCVLLED 434 (480)
Q Consensus 425 ~~~A~~~~~~ 434 (480)
+.+|.++--+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 9888876544
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.30 E-value=0.21 Score=46.97 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
..-...+++-+-+.|..+.|+++- .|+.+ -.....+.|+++.|.++.++.. +...|..|....
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~---rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFV---------TDPDH---RFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHH---HHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhc---------CChHH---HhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHH
Confidence 334455555555556666555542 12211 2233345566665555443332 445566666666
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
.+.|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+.....
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 666666666655555432 344444455555555555555444443
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.19 E-value=0.4 Score=37.19 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=12.1
Q ss_pred CChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011652 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 142 (480)
+.......+++.+...+..++..++.++..|+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 33333344443333333333333333333333
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=1.2 Score=44.15 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (480)
+-+.|++++|...|-+.. +..++ ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI--~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETI--GFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHhcCCHHHHHHHHHHHc--ccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 345566666666554432 22111 23445555555566666666666666643 3334455666777777766666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
+..+....+.. ..-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|++.+..+
T Consensus 452 efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 55554442110 11133344444445555555444433322 22222222 33456777777777655
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.12 E-value=2.1 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHccC--ChhhHHHHHHHhh
Q 011652 169 FNGLLSALCKSK--NVRKAQEIFDCMK 193 (480)
Q Consensus 169 ~~~ll~~~~~~~--~~~~a~~~~~~~~ 193 (480)
...+|..|.+.+ .++.|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344555555554 3444444444333
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.18 Score=45.34 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG-KLRKLL 454 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~ 454 (480)
++..+.-+|.+.+++.+|.+...+....+. +|......-..+|...|+++.|...|+++++. .|+..... .++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 456667777777777777777777776653 36666666677777777777777777777763 45444443 333333
Q ss_pred HhcCC-HHHHHHHHHHHHh
Q 011652 455 IKEGR-EDVLKFLQEKMNL 472 (480)
Q Consensus 455 ~~~g~-~~~a~~~~~~~~~ 472 (480)
.+... .+...++|.+|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 33333 3334566666654
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.93 Score=39.20 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=65.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
.....|++.+|..+|.......+-+...-..++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44566777777777777766666555666666777777777777777776665432111111112223333333333333
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
..+-.+... .+.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333322 233555555566666666666666666555543
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.94 E-value=0.24 Score=46.65 Aligned_cols=156 Identities=11% Similarity=0.140 Sum_probs=88.0
Q ss_pred HHHhcCCHHHHHHHHH--HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 244 VLCKAGRVDEALGIVK--SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
...-.++++++.++.. ++.. .-+....+.++..+.+.|-.+.|+.+..+-.. -.....+.|+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 3444677777666654 2221 11234466777777777777777766433221 12344567777
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
+.|.++.++. .+...|..|.......|+++-|++.+.+... +..|+-.|.-.|+.+.-.++.+...
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 7776654332 2566788888888888888888888777653 5666677777777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 402 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 655 244444555555766666666554
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.90 E-value=0.28 Score=41.76 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK----------------GIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
.++-....++.|.+.|+.-|..+|..|+..+-+. .+-+=+++++++|...|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444455555555555555555555444321 122346778888888888888888888888
Q ss_pred HHHhcCC-HHHHHHHHHHHHhhh
Q 011652 453 LLIKEGR-EDVLKFLQEKMNLLV 474 (480)
Q Consensus 453 ~~~~~g~-~~~a~~~~~~~~~l~ 474 (480)
++.+.|- .....++.--|.+++
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPkfk 189 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPKFK 189 (406)
T ss_pred HhccccccHHHHHHHHHhhhhhc
Confidence 8877665 345555555555543
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.87 Score=38.10 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
-...|..-..+|...+++++|...+.+..+-.-.+. ..+-....+++|.-+.+++.+. +.-+..|+-....
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr-------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 455677777778888888888887776653211111 1112223355555666666552 2233455666677
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCC
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---G--CNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~ 250 (480)
|..+|..+.|-..+++.-+ ..++-++++|+++|++...- + ...-...+...-+.+.+...
T Consensus 101 Y~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888777777666543 12234556666666654321 0 11112234444555666666
Q ss_pred HHHHHHHHHHhhhC-----CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHh
Q 011652 251 VDEALGIVKSMDST-----VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 251 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 322 (480)
+++|-..+.+-... .....-..|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 66665544432211 001111234444445555566667776666643322 1224455566665543 45555
Q ss_pred HHHHHH
Q 011652 323 NVYRVL 328 (480)
Q Consensus 323 ~a~~~~ 328 (480)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555443
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.87 E-value=0.26 Score=36.63 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=63.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCC
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSM---HTFSVLINGLCDKGI 424 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~ 424 (480)
++...|+++.|++.|.+.....|..+..||.-.+++.-.|+.++|+.-+++..+. |.. .. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888888777778888888888888888888888888777764 322 22 223333445667788
Q ss_pred hHHHHHHHHHHHHcC
Q 011652 425 VSDSCVLLEDMIEKG 439 (480)
Q Consensus 425 ~~~A~~~~~~~~~~~ 439 (480)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777666
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.11 Score=46.59 Aligned_cols=138 Identities=14% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
.+.+.+.|++..|...|++....-. |.+.-+.++..... ..-..+++.+..++.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHH
Confidence 4467788888888888887543210 00000111111111 122344566666777777777
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCH-HHHHHHHHHh
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG-IMVDVLCKAGRV-DEALGIVKSM 261 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-~~a~~~~~~~ 261 (480)
.|++.-+......++|......-..++...|+++.|+..|+++++. .|+..... .++.+-.+.... +...++|..|
T Consensus 275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766777777777777777777778887777777764 45443333 333333333333 3335666666
Q ss_pred hh
Q 011652 262 DS 263 (480)
Q Consensus 262 ~~ 263 (480)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.2 Score=42.65 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG-V-TQNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll 173 (480)
.|+.-+..+ +.|++..|.+.|....+..| ..+.++.-|...+...|++++|..+|..+.+.- - +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 34445555555555555444 334445555555555555555555555444321 0 11123344444
Q ss_pred HHHHccCChhhHHHHHHHhhcCC
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRF 196 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~ 196 (480)
.+..+.|+.++|...|+++.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 44455555555555555555443
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.79 E-value=0.9 Score=42.13 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=65.2
Q ss_pred hHHHHHHHHHH---hCCCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 114 QIMWDLVNAMR---TKRMLNVETFCIIMRKYAR---------VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 114 ~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
+.|..+|.+.. ..+|.....|..+...+.. .....+|.++-+...+.+ +.|+.+...+..+..-.++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 45566666666 3333334444444333321 123445556666666655 5566666666666666666
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
++.|..+|++...-.|....+|....-...-.|+.++|.+.+++..+.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 777777777766654555555555555555567777777777665543
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.77 E-value=0.036 Score=32.80 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
|..+...|.+.|++++|+++|+++.+..|.+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 444444445555555555555555444444444443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.85 Score=40.05 Aligned_cols=153 Identities=14% Similarity=0.028 Sum_probs=93.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH----HHHHHhhcCCCh
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS----ILLEGWGKDPNL 216 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 216 (480)
....|++.+|-..++++.+. .|.|...++..=.+|.-.|+...-...++++.....++...|. .+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34456677777777777663 4667777777777777778777777777777665445554333 334445567778
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---ccHHHHHHHHHHhhccCCHHHHHHHH
Q 011652 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
++|++.-++..+.+. .|...-.++...+-..|++.++.+...+-...--. .-.+.|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877777766542 25555666666777777777777776655432110 01111222233344557778888887
Q ss_pred HH
Q 011652 294 LE 295 (480)
Q Consensus 294 ~~ 295 (480)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 75
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.7 Score=43.22 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=64.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 011652 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 323 (480)
.+.+.|++++|...|-+-...- .|+ .++.-|.......+-..+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 3345566666655555444321 121 2333444444555555555666655554 33344455566666666655
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 324 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
..+..+... .|.. ..-....+..+.+.+-.++|..+-.... .+......++ -..|++++|.+.+..+
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555444333 1111 1123344445555555555554443322 1233333322 2345666666666544
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.32 Score=41.46 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIP-SMHTFSVLIN 417 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~ 417 (480)
|+..+.. .+.|++..|...|....++.|. .+..+--|..++...|+++.|..+|..+.+.- -.| -+..+.-+..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444443 3445566666666666653322 22334445566666666666666666555431 111 1244555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 011652 418 GLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666666666543
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=0.97 Score=41.94 Aligned_cols=80 Identities=6% Similarity=0.095 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.+|.++-++..+..+.|+.....+..+....++++.|...|++....+.. ...+|......+...|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444555555555555555555555555555566666666665554311 23344444444455566666666666544
Q ss_pred H
Q 011652 437 E 437 (480)
Q Consensus 437 ~ 437 (480)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.43 E-value=1.4 Score=37.36 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 011652 244 VLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~ 261 (480)
++.+.++++.|+..+++.
T Consensus 80 A~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 80 AYYKNGEYDLALAYIDRF 97 (254)
T ss_pred HHHhcccHHHHHHHHHHH
Confidence 333344444444444433
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.32 E-value=0.85 Score=34.13 Aligned_cols=136 Identities=13% Similarity=0.218 Sum_probs=77.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhCCChHH
Q 011652 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---CNIILNGLIGRGETDE 358 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~ 358 (480)
-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-. ..|... ...++.+++..|
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRN---- 83 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhc----
Confidence 357777777777777664 3566677766555554444444444444432 233322 223333333332
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.+.......+..+...|+-++-.++++.+... -.+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 84 -------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 84 -------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 23344455667778888888888888887653 3467788888888888888888888888888887
Q ss_pred CCC
Q 011652 439 GIR 441 (480)
Q Consensus 439 ~~~ 441 (480)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.26 E-value=2.9 Score=39.97 Aligned_cols=186 Identities=9% Similarity=-0.052 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+..+|..-+..-...|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+-..+-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456666666667777777777777766431 111122333333333444777777766665554322212211111112
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF---KVWKYMKLKRFIPSMHTFSVLING-----LC 420 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~-----~~ 420 (480)
-+-..|+.+.|..+++.+.+..+.....-..-+....+.|+.+.+. .++........ +......+.-- +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHH
Confidence 2334578888888888887755333333334455556677777666 33333322111 22222222221 22
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
-.++.+.|..++.++.+. +.++...|..++..+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 346777788888777764 4556666667766665544
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.23 E-value=0.32 Score=42.18 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-----YGVTQNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll 173 (480)
++..++..+...|+++.+.+.++++....+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666655543 35555555554444
Q ss_pred HH
Q 011652 174 SA 175 (480)
Q Consensus 174 ~~ 175 (480)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=1.9 Score=37.44 Aligned_cols=167 Identities=14% Similarity=0.025 Sum_probs=105.3
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
.+++..-+.+.+-......+....... ..++ .|..+|..+....+ -+...-..++..|...|+++.|..++..+.
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~-~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELI-EAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhh-hccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 345555555544333333333333333 3333 78888877765543 356677788999999999999999999987
Q ss_pred hCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc--CCCCChh
Q 011652 125 TKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSK 201 (480)
Q Consensus 125 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 201 (480)
.... ........-|..+.+.....+..++-..+-.. +-|...-..+...+...|+.+.|.+.+-.+.. ....|..
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~ 273 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE 273 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence 6654 22222334455566666665555555555442 44777777888889999999999887776655 3334556
Q ss_pred hHHHHHHHhhcCCChhH
Q 011652 202 TYSILLEGWGKDPNLPR 218 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~ 218 (480)
.-..++..+.-.|.-+.
T Consensus 274 ~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 274 ARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHHhcCCCCH
Confidence 66667766666554433
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.10 E-value=0.1 Score=30.80 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+..+...|.+.|++++|.++++++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.07 E-value=1.2 Score=34.49 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
++..+...+.......+++.+...+. .+....+.++..|++.+ ..+....+.. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555554442 34445555555555432 2222222221 1133334445555555555
Q ss_pred hHHHHHHHHHH
Q 011652 356 TDEAYRVFRRM 366 (480)
Q Consensus 356 ~~~a~~~~~~~ 366 (480)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.07 E-value=2.8 Score=38.60 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP---SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
..+|..++..+.+.|.++.|...+.++...+... .+.....-++.+...|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666655555422111 223333344555555666666555555444
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.86 E-value=1.1 Score=34.43 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHhCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+.|++++|.+.|+.+....+ -....--.++.+|.+.+++++|...+++.++........-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 4456677777777777666333 2334555666777777777777777777766542222233444444443
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=1.2 Score=39.15 Aligned_cols=156 Identities=7% Similarity=-0.155 Sum_probs=109.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCCh
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
.+.-.|+..+|-..++++.+..|.+.-++.-.=.+|.-.|+.+.-...++++... ++|-...+...+.-++..+|-+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3455788888888889988888777777777788888899988888888887654 2222233333444456678999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---GCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
++|++.-++..+-.+.|.-.-.++...+--+|++.++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999999888866777777788888888899999988876654321 000011112223335566789999999987
Q ss_pred Hh
Q 011652 260 SM 261 (480)
Q Consensus 260 ~~ 261 (480)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 54
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.81 E-value=2.7 Score=37.30 Aligned_cols=128 Identities=14% Similarity=0.277 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--cC----ChhhHHHHHHHhhcCC----CCChhhHHHHHHHhhcCCC-
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK--SK----NVRKAQEIFDCMKDRF----IPDSKTYSILLEGWGKDPN- 215 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~- 215 (480)
+++.+.+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++.. .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888887776654433333 22 2556888888887732 2334445555443 2333
Q ss_pred ---hhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCccHHHHHHH
Q 011652 216 ---LPRAREIFREMVDTGCNPDIVT--YGIMVDVLCKAGR--VDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 216 ---~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
.+.+..+|+.+.+.|+..+... ...++..+..... ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 3456667777777666544321 2222222111111 33566666666666666665555444
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.76 E-value=2.2 Score=36.04 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHhCCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
+...++.+.+...+.......+. ....+..+...+...+.++.|...+......... ....+..+...+...+..+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHH
Confidence 34445555555555555543333 3455555555555555556666655555543211 123333333333344556666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...+.+...
T Consensus 256 ~~~~~~~~~ 264 (291)
T COG0457 256 LEALEKALE 264 (291)
T ss_pred HHHHHHHHH
Confidence 666665554
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.68 E-value=0.74 Score=39.36 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=77.8
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhc-----CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGK-----DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
++.|.... ....+..+|-..+..+.. .+.++-....++.|.+-|++.|..+|+.|++.+-+..-.- ..+|+.
T Consensus 54 e~~F~aa~-~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~ 130 (406)
T KOG3941|consen 54 EKQFEAAE-PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK 130 (406)
T ss_pred hhhhhccC-cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH
Confidence 34444443 223466677777776643 4556667777888888888888888888888765432111 011111
Q ss_pred hhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHH
Q 011652 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF-KNVYRVLKDM 331 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 331 (480)
. .-.| -.+-+-+++++++|...|+.||..+-..++.++.+.+.. .+..++.-.|
T Consensus 131 ~---------------F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 V---------------FLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred H---------------HhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 1 1111 123345788899999999999999888888888877653 3334444334
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.67 E-value=3 Score=37.08 Aligned_cols=127 Identities=9% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCCh-
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCK--A----NKFKNVYRVLKDMNSKGV---APNSRTCNIILNGLIGRGET- 356 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~- 356 (480)
++...+++.+.+.|..-+..+|-+....... . ....++..+++.|.+..+ .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566667777766665555443322222 1 124566677777766532 2233344444332 22222
Q ss_pred ---HHHHHHHHHHHh-cCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 357 ---DEAYRVFRRMIK-LCEADA--DTYTMMIKMFCQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 357 ---~~a~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
+.++.+++.+.+ +...+. .....++........ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 334455555555 333222 222222222211111 33555666666666666555554443
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.62 E-value=4 Score=38.30 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
..-..+..++.+.|+.++|.+.++++.+..+. +..+...|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344556666777777777777777764333 334566677777777777777777777543
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.57 E-value=1.8 Score=33.99 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=24.2
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+.++.+++..++..+.-.-|.....-..-...+.+.|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554422222222222233445555666666666655443
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.53 E-value=1.3 Score=33.02 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=71.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcC
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET---FGKLRKLLIKEG 458 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g 458 (480)
-+....|+.+.|++.|.+....-. -+...||.-..++.-.|+.++|+.-+++.++..-.-.... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 456788999999999999887642 3778999999999999999999999999987532222222 333344566789
Q ss_pred CHHHHHHHHHHHHhhhC
Q 011652 459 REDVLKFLQEKMNLLVK 475 (480)
Q Consensus 459 ~~~~a~~~~~~~~~l~~ 475 (480)
+.+.|+.=|+...+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999998888777653
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.46 E-value=2.6 Score=35.57 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011652 249 GRVDEALGIVKSMDSTVCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYR 326 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 326 (480)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443211 13455666677777778888777777776542 223345556666667777777888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHHhCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 327 VLKDMNSKGVAPNSRTCNIILN-GLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 327 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+.........+ ......... .+...|+.+.|...+.......+ .....+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888877754333 122222223 67888999999999998866222 2334445555557788999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.........+..+...+...++++.|...+......... ....+......+...|..+.+...+.+..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 542213677888888899999999999999999874322 244455555555577789999988887766543
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.43 E-value=0.72 Score=40.04 Aligned_cols=60 Identities=20% Similarity=0.392 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
++..++..+...|+.+.+...++++....+-+...|..++.+|.+.|+...|...|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444445555555555555555555445555555555555555555555555555443
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.27 E-value=3.6 Score=36.75 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHHHhCCChHHHHHHHHHHHh--cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIK--LCEA----DADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
.+....+.++++++.|+.+.+ .... ...++..|...|.+..++++|.-+..
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 334444445555555554443 1111 12344455555555555555544433
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.22 E-value=0.097 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
+..+...|.+.|++++|.+++++...+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555554433
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.11 E-value=3.3 Score=37.01 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCC---CH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAM----RTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQ---NL 166 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~ 166 (480)
..+|..+..+..+.|.+++++..--.- .+..- .--.+|..+.+++-+..++.+++.+-..-... |..| .-
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 346667777888888887765532221 11111 22345666677777777777777766554432 2222 12
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc----CCC--CChhhHHHHHHHhhcCCChhHHHHHHHHHHH----cCCCCCh-
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD----RFI--PDSKTYSILLEGWGKDPNLPRAREIFREMVD----TGCNPDI- 235 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~- 235 (480)
.....+..++...+.++++++.|+.... ... ....+|..|...|.+..++++|.-+..+..+ .++. |.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chh
Confidence 3344566677777888999988888765 111 1345788888999999999988877666542 1222 21
Q ss_pred hhHHH-----HHHHHHhcCCHHHHHHHHHHhhh----CCCCc-cHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 236 VTYGI-----MVDVLCKAGRVDEALGIVKSMDS----TVCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 236 ~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
.-|.. |.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|++..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11222 23345566777777766665533 33222 23344567788888999998888877753
No 279
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=2.2 Score=37.27 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----CEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 336 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
......+...++..-....+++.++..+-.+... ..+ +..+| ++.+.+ -++++++.++..=+..|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3334444555554444455566666555555431 111 11222 222222 2455666665555566666666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.++..++..+.+.+++.+|..+.-.|+.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666666555553
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.50 E-value=3.4 Score=33.48 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCCH----H
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNL----A 167 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~ 167 (480)
..+..+.+.|.+.|+.+.|.+.|.++..... .-...+-.+|+.....+++..+...+.+.... |-+.+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677888888889999999999988877654 34556777888888888888888887666442 211111 1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 168 AFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+|..+ .+...+++..|-+.|-....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCc
Confidence 22222 22345777777777766654
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.27 E-value=8.1 Score=38.08 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHH---hhccCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC-
Q 011652 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHT---YGVENRIEDAVDTFLEMEK-------NGILADVAMYNALIGAFCKAN- 319 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~- 319 (480)
...+.++++...+.|. .........+.. +....+.+.|...++...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777776652 222222222222 3355677788888777765 33 2223445555555532
Q ss_pred ----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCCHHH
Q 011652 320 ----KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLCEADADTYTMMIKMFC--QGGELEK 392 (480)
Q Consensus 320 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~ 392 (480)
+.+.|..++....+.|.+ +.......+..... ..+...|.++|..+.+...+....+..++.... ...+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 455567777666665433 32222222111111 134566777776666533333222222221111 2345666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
|..++++..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777666665 2221222222223333 55555555555555544
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.21 E-value=0.5 Score=33.00 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+.++.+...+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44445555555566666666666666666666666666666666543322333444433
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.18 E-value=1.8 Score=35.06 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC---EADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+..+...|.+.|+.+.|.+.+.++.... ..-...+-.+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566666667777777777777666521 12223445566666666677666666665543
No 284
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.13 E-value=3.2 Score=32.03 Aligned_cols=18 Identities=44% Similarity=0.813 Sum_probs=9.2
Q ss_pred HhCCChHHHHHHHHHHHh
Q 011652 351 IGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~ 368 (480)
...|++++|.++|+++.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 444555555555555444
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.11 E-value=0.47 Score=33.51 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455555666666677777777777777777777777777777776644333335555443
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.00 E-value=0.89 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
-++.+-++.+...++.|++....+.+++|.+.+++..|.++|+.+...+..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 345555566666666677777777777777777777777777766643333334444433
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.96 E-value=0.16 Score=27.95 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=14.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 365 RMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
+.++..|.++..|..+...|...|++++|
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 33333444555555555555555555554
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.78 E-value=0.0053 Score=48.04 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=47.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++ . .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcch
Confidence 445555666666666677776665545556667777777777766666666555 1 122333445555666666
Q ss_pred hHHHHHHHHH
Q 011652 356 TDEAYRVFRR 365 (480)
Q Consensus 356 ~~~a~~~~~~ 365 (480)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.71 E-value=0.32 Score=27.14 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888854
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.68 E-value=0.17 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHhCCHHH
Q 011652 130 NVETFCIIMRKYARVQKVEE 149 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~ 149 (480)
+..+|..+...+...|++++
T Consensus 12 n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHh
Confidence 33333333333333333333
No 291
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.67 E-value=12 Score=37.51 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHHHHHH--HHHhcCChHHHHHHHH--------HHHHcCCCCCHHHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRF-IP-----SMHTFSVLIN--GLCDKGIVSDSCVLLE--------DMIEKGIRPSGETFG 448 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~-~p-----~~~~~~~l~~--~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~ 448 (480)
+-.+++..|...+..+..... .| ....+..++. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889899999888875311 11 1223333333 3445689999999997 444555555554444
Q ss_pred HH--HHHHHhcCC--HHH--HHHHHHHHHh
Q 011652 449 KL--RKLLIKEGR--EDV--LKFLQEKMNL 472 (480)
Q Consensus 449 ~l--~~~~~~~g~--~~~--a~~~~~~~~~ 472 (480)
.+ +-.+...+. .++ +..+++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 32 222222232 222 5666665544
No 292
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.62 E-value=6.4 Score=34.18 Aligned_cols=58 Identities=7% Similarity=-0.009 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
++...+.|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455667777788888888777776643 336666777777777777766666655555
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.55 E-value=9.3 Score=35.93 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=74.1
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHH
Q 011652 370 CEADADTY-TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC--DKGIVSDSCVLLEDMIE-KGIRPSGE 445 (480)
Q Consensus 370 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~p~~~ 445 (480)
..++..++ +.+++.+.+.|.+.+|.+++..+... .+|+...|..+++.-. .+-+...+..+++.|.. .| .|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChH
Confidence 34444443 56788888999999999999999876 3568888888876422 22337888899999884 46 6788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 446 TFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.|.-.+..-...|..+.+-.++.+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888887777788998888777666544
No 294
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.49 E-value=4.1 Score=35.42 Aligned_cols=113 Identities=8% Similarity=0.122 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK--IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.|+++|+........-.|..+-..+++.... .......-++.+-+... +.++..+...++..++..+++..-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 4555665332211222355555555554443 11223333333333332 2256666666666666666666666666
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 011652 155 NVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 191 (480)
+..... +...|...|..+|......|+..-..++.+.
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 655443 4445666666666666666666665555554
No 295
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.45 E-value=9.7 Score=35.89 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
.+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445566666666666666543211 1223445566666666666666666665543
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=5 Score=31.88 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHhc-CCCCHH-HHHH-
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR-TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD-TYTM- 379 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~- 379 (480)
+...|...++ +.+.+..++|+.-|.++.+.|...-+. ..-.......+.|+...|...|+++-.. ..|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455555554 466788899999999998876542111 1112233456788999999999988762 222211 1111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 380 -MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 380 -l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
-...+...|.++....-.+.+...+-+-....-..|.-+-.+.|++..|...|..+......|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 1233556788888887777766554333444555666677788999999999988876433443
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.10 E-value=2.9 Score=29.72 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
+..+-++.+...++.|++....+.+++|.+.+++..|.++|+.+...+.+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45555666666667777777777777777777777777777777664333333554444
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.97 E-value=0.62 Score=25.25 Aligned_cols=29 Identities=17% Similarity=-0.057 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+..+..++...|++++|.+.+++..++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44445555555555555555555555443
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=2 Score=41.08 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (480)
..+.++.-+.++|..++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALS 678 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhh
Confidence 344555555566666665544 222221 1223345577777766665554 55567777777777
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHH
Q 011652 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (480)
.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.| .. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHH
Confidence 7777777777665543 3445555556666655555555555544 22 2223345556677666666
Q ss_pred HHHH
Q 011652 293 FLEM 296 (480)
Q Consensus 293 ~~~~ 296 (480)
+..-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5443
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.86 E-value=6 Score=32.16 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011652 347 LNGLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (480)
...+...|++++|+..++....... ....+--.|.+.....|.+++|.+.++.....+. .......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3456677778888777776654111 1112223455666777888888888877665432 2223344456778888
Q ss_pred ChHHHHHHHHHHHHcC
Q 011652 424 IVSDSCVLLEDMIEKG 439 (480)
Q Consensus 424 ~~~~A~~~~~~~~~~~ 439 (480)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887765
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.54 E-value=7 Score=32.35 Aligned_cols=84 Identities=12% Similarity=-0.007 Sum_probs=49.2
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|-+.-|.--|.+...-.|.-+.+||.+.--+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+=+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHH
Confidence 333444444444444445556778888888888888888888888887754332222233333222 3577777766655
Q ss_pred HhhhC
Q 011652 260 SMDST 264 (480)
Q Consensus 260 ~~~~~ 264 (480)
..-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 55444
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.30 E-value=0.82 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+|..+..+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555666666655555554
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.98 E-value=0.68 Score=25.18 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|..+..++...|++++|...+++..+++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4444444555555555555555544444
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=5 Score=35.16 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
++++++.++..=++.|+.||..+++.+|+.+.+.+++.+|..+...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555545555555555555555555555555555555444443
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.82 E-value=7.1 Score=31.06 Aligned_cols=137 Identities=10% Similarity=0.055 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH-HHH--
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA-AFN-- 170 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-- 170 (480)
+...|..-+. +++.+..++|+.-|..+...|.-+-..+. .........|+...|...|+++-.....|-.. -.-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444333 34455566666666666655542222221 22233345566666666666664432222211 000
Q ss_pred HHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC
Q 011652 171 GLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (480)
--.-.+...|.++......+-+.. +.+--...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 111234455666666665555544 222223334455555566666666666666665443333
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.97 E-value=24 Score=35.91 Aligned_cols=224 Identities=11% Similarity=0.028 Sum_probs=114.4
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCccHH-------HHHHHH-HHhhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMDSTVCRPTSF-------IYSVLV-HTYGVENRIEDAVDTFLEMEKN----GILADVAMYNALIG 313 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 313 (480)
....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44678888888888776543232211 233222 2234567888888877776543 22334556666667
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHhCCCh--HHHHHHHHHHHh----cCC---CCHHHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL-----NGLIGRGET--DEAYRVFRRMIK----LCE---ADADTYTM 379 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~----~~~---~~~~~~~~ 379 (480)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+. .+.+..+..... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777889998888877765542222333322222 224455632 233333333333 111 12234455
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 011652 380 MIKMFCQG-GELEKAFKVWKYMKLKRFIPSMHTF--SVLINGLCDKGIVSDSCVLLEDMIEKG----IRPSGETFGKLRK 452 (480)
Q Consensus 380 l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~ 452 (480)
++.++.+. +...++..-+.--......|-...+ ..++......|+.++|...+.++.... ..++.......++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555551 1112222222222222222222222 255667777899999998888887532 2333333333333
Q ss_pred HH--HhcCCHHHHHHHHHH
Q 011652 453 LL--IKEGREDVLKFLQEK 469 (480)
Q Consensus 453 ~~--~~~g~~~~a~~~~~~ 469 (480)
.. ...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 32 346777777666655
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=11 Score=31.60 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHh---cCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 354 GETDEAYRVFRRMIK---LCEADAD---TYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~---~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
.+++.|+..++..-+ +...+.. .+--....-...+++.+|.++|+++....+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666655554 2122221 2222333344567788888888877765443
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.42 E-value=1.1 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555566666666666666666654
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.32 E-value=9.2 Score=30.11 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=28.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+.++.+++..+++.+.-..|-....-..-...+...|++.+|+.+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44556666666666666555422222222333445566666666666665543
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.24 E-value=9.8 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
+++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444455556666666666666666665444
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.14 E-value=7 Score=31.78 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS-----VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
.+...+...|++++|..-++..... |....+. .|.+.....|.+++|+..+....+.+.. ......-.+.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 4567788899999999999987754 2333333 3456678899999999999877654432 3334445688
Q ss_pred HHhcCCHHHHHHHHHHHHhhhC
Q 011652 454 LIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+...|+.++|+.-|++..+...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccC
Confidence 9999999999999998877643
No 312
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.10 E-value=48 Score=38.08 Aligned_cols=62 Identities=15% Similarity=-0.064 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.+|....+.....|.++.|...+-.+.+.+ . +..+...++.+...|+...|..++++..+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 456666666666666666666655555443 1 2334445566666666666666666655443
No 313
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.09 E-value=10 Score=30.27 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
+.+..+.+.+++|+...+..++..+.+.|++.....++.- +.-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 3444555566777777777777777777765544443322 22333333332222221 2223344443333321
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
=...+..+++.+...|++-+|+++....
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445556666667777777666654
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.97 E-value=2.7 Score=34.69 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.++.+.+.+..++++...+.-.+.+|.+...-..++..++-.|++++|..-++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555555544444444444444555555555555554444433
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.96 E-value=4.9 Score=32.92 Aligned_cols=70 Identities=6% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+ +..+|+..+..|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555544433333333333333333 4555566655555554 2245555566666666655555554
No 316
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.89 E-value=28 Score=35.08 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=69.5
Q ss_pred cCCHhHHHHHHHHHHhCC-CCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKG-VAPNS--RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
..+.+.|...+....... ..+.. .....+.......+..+++...++..... ..+......-++.-.+.++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-cCCcHHHHHHHHHHHHccCHHHHH
Confidence 445688888888765442 22221 22333333333333355666666654432 234445555566666888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
..+..|....- -...-.--+.+++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888754321 133334446677677899999999988874
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.58 E-value=5.3 Score=32.73 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 183 RKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---GCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 183 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
+.|.+.|-.+.. +.-.++.....|...|. ..+.+++..++.+..+. +-.+|...+..|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444443 22223333333333333 44455555555544422 1234555555555555555555554
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.03 E-value=20 Score=32.47 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc---CCChhHHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK---DPNLPRAREIF 223 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 223 (480)
.+.-+.++++..+.+ +.+...+..+|..+.+..+.++..+.++++....+-+...|...+..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344556666666653 45556666667777766666666677777666555566666666655443 22344555555
Q ss_pred HHH
Q 011652 224 REM 226 (480)
Q Consensus 224 ~~~ 226 (480)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.74 E-value=1.7 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.40 E-value=11 Score=30.87 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=72.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADA-----DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
.-+...|++++|..-|..+...+++.. ..|..-.-++.+.+.++.|+.-..+.++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 347789999999999999999777654 35666667788899999999998888887632 333444445678888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
..+++|+.-|+.+++. .|...
T Consensus 182 ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHh--CcchH
Confidence 9999999999999885 35544
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.39 E-value=1.8 Score=24.74 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+++.+...|...|++++|..++++..++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4566677777777777777777777766544
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.37 E-value=10 Score=31.03 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (480)
.-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|+.-....++..+........-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 457889999999999999998632211 2234444567788899999988888887766666666666678899999
Q ss_pred CHHHHHHHHHHHHhCC
Q 011652 389 ELEKAFKVWKYMKLKR 404 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~ 404 (480)
.+++|+.-|+.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.92 E-value=2.5 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.042 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+|..+...+...|++++|.+.+++..++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555666666666666666666666554
No 324
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=20 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
...+..+...|++-++.+.+.++.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444555555555555555555444433
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.51 E-value=6.4 Score=32.61 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKM 383 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~ 383 (480)
.+..++.+.+.+...+++...++-++..+. |...-..+++.++-.|++++|..-++.... ...+...+|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455566666666666666655554222 444555566666677777777665555544 333444555555543
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.48 E-value=22 Score=31.17 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
..++..+...++..++..+++.+-.++|..-... +..-|...|..++......|+..-..++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4556666666667777777777777766655543 334466667777777777776655444443
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.32 E-value=12 Score=36.10 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011652 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 352 (480)
-+.++..+.+.|-.++|+++- +|...- .....+.|+.+.|.++..+.. +..-|..|..+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555555666555555432 222111 123345677777776665543 45567777777777
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011652 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (480)
.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |....+|...|+++++.+++
T Consensus 679 ~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 679 AGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred cccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 7888877777776543 556666666677766555555555555422 22334556667777777766
Q ss_pred HH
Q 011652 433 ED 434 (480)
Q Consensus 433 ~~ 434 (480)
.+
T Consensus 745 i~ 746 (794)
T KOG0276|consen 745 IS 746 (794)
T ss_pred Hh
Confidence 54
No 328
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=20 Score=30.38 Aligned_cols=118 Identities=10% Similarity=0.008 Sum_probs=67.3
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNS-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
|.....++.|...+.+.... .|+. .-|..=+.++.+..+++.+..--++..+..+..+.....+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 44455677777766666654 4444 33444555566677777777666666654444444555566666677777777
Q ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 394 FKVWKYMKL----KRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 394 ~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
...+.+..+ ..++|-...+..|..+--..=...+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 777776632 33444445555555543333334444444444
No 329
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.08 E-value=72 Score=36.81 Aligned_cols=151 Identities=8% Similarity=0.041 Sum_probs=98.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+..+-.+++.+..|...+++-..... .....+..+...|+..+++|...-+...-.. .|+ .+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 344566788899999999988422111 2233344555589999999888777664111 222 222 3445677
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI-MVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~ 257 (480)
.|++..|...|+++.+..++....++.++......|.++.+.-..+-.... ..+....++. =+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999877777888998888888888888877766555433 1222233332 23344566777776666
Q ss_pred HH
Q 011652 258 VK 259 (480)
Q Consensus 258 ~~ 259 (480)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 55
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.83 E-value=41 Score=33.78 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH---
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCK--- 317 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 317 (480)
...+.-.|.++.|.+.+-. ..+...+..++...+..|.-.+-.+... ..+.... -.|..--+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667899999888876 2223455555555555554333222211 2221110 01112456777777776
Q ss_pred cCCHhHHHHHHHHHHhC
Q 011652 318 ANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~ 334 (480)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777666553
No 331
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.76 E-value=4.3 Score=30.11 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHH
Q 011652 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
..+-++.+...++.|++.+-...++++.+.+|+..|.++|+-++.+..+....|..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344455555566677777777777777777777777777777665444433344443
No 332
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=37 Score=35.13 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=20.7
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|......+.+..+++.+....-.++....+.++..|..
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34455556666666666544444455555555555543
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.46 E-value=0.39 Score=37.42 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (480)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544434445555555555555555455544444
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.30 E-value=5.8 Score=35.22 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=28.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
.-|.+.|.+++|+.++...... .| +.+++..-..+|.+...+..|+.-...+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455566666666666555443 23 45555555555555555555554444443
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.23 E-value=16 Score=28.40 Aligned_cols=52 Identities=12% Similarity=-0.084 Sum_probs=25.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..++++++..+++.|.-..|.....-..-...+...|++++|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3556666666666665544422222222223344556666666666665554
No 336
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.23 E-value=21 Score=29.78 Aligned_cols=63 Identities=16% Similarity=-0.047 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
+.+||.|.--+...|+++.|.+.|+...+-.+....+...-.-++.--|+++-|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 445555555555566666666666665553222222222222223334556666555555443
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.78 E-value=8.2 Score=33.54 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (480)
+++...+.|..+|.+.+|.++.+.....+ +.+...+..++..++..||--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555566667777777777777666654 4556666666777777777555555555553
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.59 E-value=12 Score=30.02 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 370 CEADADTYTMMIKMFCQGG----E-------LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.|....++..+..+|...+ + +++|...|++..+. .|+..+|+.-+... ++|-++..++.+.
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 3444456666666555432 2 33333333333332 35666665555443 2345555555444
Q ss_pred C
Q 011652 439 G 439 (480)
Q Consensus 439 ~ 439 (480)
+
T Consensus 137 ~ 137 (186)
T PF06552_consen 137 G 137 (186)
T ss_dssp S
T ss_pred H
Confidence 3
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.58 E-value=32 Score=31.49 Aligned_cols=66 Identities=3% Similarity=-0.027 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
....++..++..+.+.|.++.|...+..+...+... .+...-.-++..-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777788888888888888888877643111 233334445556667888888888877766
No 340
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.35 E-value=39 Score=32.22 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=103.6
Q ss_pred CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 011652 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275 (480)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (480)
.+.|....-+++..+..+..+.-+..+..+|..-| -+-..|..++.+|... ..++-..+++++.+..+ .+...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34566666777777777777777777777777643 3556677777777776 44666777777766542 23333333
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNSK-GVAPNSRTCNIILNG 349 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 349 (480)
|...|.+ ++...+...|.++...=++.. ...|.-+.... ..+.+....+..++... |...-...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444433 666777777766654322100 11233333211 23455555555555543 333333444445555
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
|....++.+|++++..+.+....|...-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 66667777777777777665555555555555544
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.15 E-value=40 Score=32.17 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
|.....+++..+..+..+.-+.-+..+|...| .+...+..++.+|... ..++-..+++++.+..+. |...-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444444555554444444444555544432 2344444455555444 334444455544443222 2222233333
Q ss_pred HHHHcCCHhHHHHHHHHHHh
Q 011652 314 AFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~ 333 (480)
.|-+ ++.+.+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3322 444444444444443
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.05 E-value=3.8 Score=36.30 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=64.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
+.|.++|.+++|+.+|.......+.|++++..-..+|.+...+..|+.-.......+-. -...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 34889999999999999988877779999999999999999998888777666553210 11233333333333455555
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 011652 428 SCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~ 445 (480)
|.+-++..++ +.|+..
T Consensus 184 AKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPKNI 199 (536)
T ss_pred HHHhHHHHHh--hCcccH
Confidence 5555555554 456643
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.90 E-value=27 Score=30.08 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCC
Q 011652 145 QKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 215 (480)
..+++|+.-|++..+...... ..+...++..+.+.+++++....+.++.. ...-+..+.|.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456677777766655321221 23344456666667777766666666543 112234445555555555555
Q ss_pred hhHHHHHHHHHHHc-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011652 216 LPRAREIFREMVDT-GCNPDIV----TYGIMVDVLCKAGRVDEALGIVKSMDS 263 (480)
Q Consensus 216 ~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (480)
.+-...+|+.-.+. .-..+.. |-..+...|...|.+.+..+++.++..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 55444444432211 0001111 223345555555666666666655543
No 344
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.29 E-value=42 Score=31.80 Aligned_cols=106 Identities=8% Similarity=-0.060 Sum_probs=67.0
Q ss_pred HHhCCChHHHHHHHHHHHh----cCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH----
Q 011652 350 LIGRGETDEAYRVFRRMIK----LCEAD-----ADTYTMMIKMFCQGGELEKAFKVWKYMKL-------KRFIPSM---- 409 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~---- 409 (480)
+.-.|++..|.+++...-- +...+ -..||.|...+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456777777777654322 21112 12345555566666777766666666553 3544421
Q ss_pred -------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011652 410 -------HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457 (480)
Q Consensus 410 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 457 (480)
.+|+ ..-.|.+.|++-.|.++|.+.... +.-++..|..+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2333 344678889999999999988764 567889999999888753
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.64 E-value=4.4 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777888888888777765
No 346
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.93 E-value=11 Score=28.17 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHH
Q 011652 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 324 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
..+.++.+..-++.|++......+++|.+.+++..|.++|+-+...+.+....|-.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44455555566677777777777777777777777777777766544444444443
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=35 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh----hhCCCCccH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTS 270 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~ 270 (480)
..++..+.+.|.+.+|+.+...+ .+.+-+++.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 45677888999999998876544 444444443
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.93 E-value=12 Score=25.82 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
+.++++.+.++++.+......+-.+-...|+.+.|.+++..+. +| | ..|...+.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 3455666666666555555544444445566777777777666 43 2 3355566666666554443
No 349
>PRK09687 putative lyase; Provisional
Probab=80.91 E-value=39 Score=29.87 Aligned_cols=232 Identities=10% Similarity=-0.008 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH----HHHHHHHHHHHhcCCCCCHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV----EEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
++..+....+..+...|..+ +...+..+... .++..-...+.+++..|+. +++...+..+... .++..+-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 35555555555565555432 22333333222 2444455556666666652 3455555555322 45555555
Q ss_pred HHHHHHHccCCh-----hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 171 GLLSALCKSKNV-----RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 171 ~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. +|...-...+.++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 555555444321 122222222211 2244444555555555554 3444555444432 2333333333444
Q ss_pred HhcC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 246 CKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 246 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
.+.+ +...+...+..+.. .++..+-...+.++++.|+. .+...+-...+.+ + .....+.++...|+. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 4332 12334444444442 33445555555566665553 3444443333332 1 123444555555553 45
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNG 349 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~ 349 (480)
...+..+.+. .||..+-...+.+
T Consensus 254 ~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 254 LPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHHHhh--CCChhHHHHHHHH
Confidence 5555555543 2344444433333
No 350
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.85 E-value=63 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011652 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 93 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 122 (480)
...++.-|+ .+..+.-.|.++.|.+++..
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 334477777 57777778899999999854
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.75 E-value=4.5 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 352
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.43 E-value=45 Score=30.25 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD---KGIVSDSCVLLED 434 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 434 (480)
.-+.+++++.+..+.+...+..++..+.+..+.++..+-|+++...... +...|...+..... .-.++....+|.+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3344555555544555555555555555555555555556655554321 44555555544332 1234444444443
Q ss_pred HHHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 435 MIEK------GI------RPS-----GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 435 ~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.++. +. .++ ..++..+...+..+|..+.|..+++-+.++..
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3311 10 000 11223333444567778888888877777653
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.37 E-value=4.5 Score=23.77 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 414 VLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888999999999998888654
No 354
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.08 E-value=36 Score=28.84 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
+...-...+++.+|.++|+++..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567889999999999877
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.05 E-value=30 Score=30.08 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=9.2
Q ss_pred HHHhhccCCHHHHHHHHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~ 297 (480)
|-.|.+.|++..+.++-....
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334444444444444444433
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.75 E-value=3 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 011652 449 KLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~ 468 (480)
.+..++...|++++|.++++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 357
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.31 E-value=70 Score=31.74 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHhCCHHHHHHHHHHHHh
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRK---YARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~ 159 (480)
..|..+++.....+..........+.. +...++.+.|+.+|+...+
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 455566665555543222222222211 2234456666666665544
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.09 E-value=6.5 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=11.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.33 E-value=23 Score=25.64 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=46.3
Q ss_pred hCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 011652 75 NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.++.+|..+.+|+....+ ....+--..+..+.+.|+|++| +..-.....||...|..| +-.+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 344588888888876644 2233333344566788888888 222112212555544443 334777777777777
Q ss_pred HHHHhcCCCCCHHHH
Q 011652 155 NVMQKYGVTQNLAAF 169 (480)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (480)
.++-..| .|....|
T Consensus 93 ~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 93 TRLASSG-SPELQAF 106 (116)
T ss_dssp HHHCT-S-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7776655 3443333
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.09 E-value=36 Score=29.64 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=64.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH--
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI-- 351 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 351 (480)
..-|.+++..|++.+++...-+.-+.--+........-|-.|.+.+....+.++-..-....-.-+...|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 445788888999999887666554432233456677778889999999999888877766422224445777776654
Q ss_pred ---hCCChHHHHHHH
Q 011652 352 ---GRGETDEAYRVF 363 (480)
Q Consensus 352 ---~~~~~~~a~~~~ 363 (480)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 469999999887
No 361
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.51 E-value=5.8 Score=20.96 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 135 CIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
-.+..++.+.|++++|.+.|+.+.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555666666666666666553
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.41 E-value=9.4 Score=25.77 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 011652 448 GKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~ 466 (480)
..++.+++..|+++++.++
T Consensus 47 G~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.31 E-value=66 Score=30.39 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=33.1
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhh--HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKT--YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV--TYGIMVDVLCKAGRV 251 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 251 (480)
.+..|+.+-+..+++. +..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 9 A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 9 AILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3445666555555542 22332211 223333444455543 333444455444322 112234444556666
Q ss_pred HHHHHHHH
Q 011652 252 DEALGIVK 259 (480)
Q Consensus 252 ~~a~~~~~ 259 (480)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 55444443
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.60 E-value=50 Score=28.59 Aligned_cols=203 Identities=9% Similarity=0.086 Sum_probs=122.4
Q ss_pred CCCCChhhHHHHHHHh-hcCCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHhhhC---C--
Q 011652 195 RFIPDSKTYSILLEGW-GKDPNLPRAREIFREMVDTGCNPDIV---TYGIMVDVLCKAGRVDEALGIVKSMDST---V-- 265 (480)
Q Consensus 195 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-- 265 (480)
+..||+..=|..-.+- .+...+++|+.-|++..+...+.... ....++..+.+.|++++..+.+.++... .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456665544332221 34557889999999988654333333 3345788888999999999988887531 1
Q ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--
Q 011652 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADV----AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP-- 338 (480)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-- 338 (480)
..-+....+.+++......+.+-.-..|+.-.+. .-..+. .+-.-+...|...|.+.+..++++++......-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1234556677777766666666555555443211 000111 123456667777888888888888887641110
Q ss_pred ---------ChhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHHHHHH----HHHhcCCHHHHHHHH
Q 011652 339 ---------NSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIK----MFCQGGELEKAFKVW 397 (480)
Q Consensus 339 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~ 397 (480)
-...|..-++.|....+-.....++++... ..-|.+.....+-. +..+.|++++|..-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 124566677778777777777778887765 45566655443322 234567888776443
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.24 E-value=17 Score=35.00 Aligned_cols=86 Identities=15% Similarity=0.037 Sum_probs=42.3
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 011652 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (480)
.|+...|.+.+.................|.....+.|....|..++.+...-....+.++..+.+++....+++.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 45555555555444322111111222334444445555555555555544422334455555566666666666666666
Q ss_pred HHHHHc
Q 011652 224 REMVDT 229 (480)
Q Consensus 224 ~~~~~~ 229 (480)
++..+.
T Consensus 700 ~~a~~~ 705 (886)
T KOG4507|consen 700 RQALKL 705 (886)
T ss_pred HHHHhc
Confidence 665544
No 366
>PRK09687 putative lyase; Provisional
Probab=76.19 E-value=56 Score=28.96 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-ChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
+..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+.
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~ 214 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAII 214 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 33344444445555444 2344444444432 23333334444444332 12334444433332 345555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.++.
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66666553 3443333333322 2 223455666666653 566666666643 235555555555543
No 367
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.37 E-value=66 Score=30.95 Aligned_cols=36 Identities=6% Similarity=0.116 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+...+..++......+....|+.+++.+.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444444444444444445566666666666665443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.23 E-value=19 Score=24.35 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
.-++.| ...+.++|+..|....+.-..|.. .++..++.+|+..|++.+++++--
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 778899999999999876443322 466778889999999999887644
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.91 E-value=71 Score=29.57 Aligned_cols=93 Identities=10% Similarity=-0.046 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc---CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---------CCCCC
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---------GCNPD 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 234 (480)
..+.-+..-|..+|+++.|.+.|.+... ..+..+..|-.+|..-...|+|.....+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3567788888899999999999988655 22334556777777778888888888777776653 12223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
...+..+.+.+. +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 333444443333 3666666655433
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.71 E-value=22 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 406 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666666666666666666666666666554
No 371
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.21 E-value=45 Score=26.97 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC----C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 113 YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ----K-------VEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
+++|+.-|++....+|....++..+..++...+ + +++|.+.|+..... .|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 345555556666666666666766666665543 2 44455555555543 57777777766655
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.62 E-value=85 Score=29.90 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=68.6
Q ss_pred HHhhccCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHh-------CCCCCCh--
Q 011652 278 HTYGVENRIEDAVDTFLEME---KNGILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNS-------KGVAPNS-- 340 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~p~~-- 340 (480)
..+.-.|++.+|.+++...- ..|...+ -..+|.+.-.+.+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888888776542 2221112 12235555555666666666666666553 3544422
Q ss_pred ---------hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 341 ---------RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 341 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.+|| ..-.|...|++-.|.+.|.........++..|-.|..+|.-
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1222 22346788999999999999998888899999999998874
No 373
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.66 E-value=63 Score=27.54 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=78.1
Q ss_pred HHhhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhCCC
Q 011652 278 HTYGVENRIEDAVDTFLEMEKNGILADV-AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI-ILNGLIGRGE 355 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~ 355 (480)
+-|.....++.|...|.+.+.. .|+. .-|..-+.++.+..+++.+..--.+..+. .|+..--.. +-........
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc
Confidence 3456667889999988777764 5665 44566667788888898887766666653 566554333 4445667788
Q ss_pred hHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 356 TDEAYRVFRRMIK-----LCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 356 ~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
+++|+..+.+... ..++.......|..+=-..=...+..++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999988855 23444455666655544444555566665554
No 374
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.55 E-value=1.2e+02 Score=30.77 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
++.+.+.+.+++|+...+.....-+ .........|..+...|++++|-...-.|.. .+..-|--.+..++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 6667788889999888876554433 2456778888888888999988888777763 345556666666666655
Q ss_pred hhhHHHHHHHhhcCCC-CChhhHHHHHHHhhc
Q 011652 182 VRKAQEIFDCMKDRFI-PDSKTYSILLEGWGK 212 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 212 (480)
.. .++.-++.+.+ .+..+|..++..+..
T Consensus 439 l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 44 33333444322 355667777776665
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.43 E-value=36 Score=32.98 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=43.4
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
...|+...|...+.........-..+....+.+...+.|....|..++.+..... ...+-++..+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3345555555555554433222233334444455555555555555555544433 223334445555555555666666
Q ss_pred HHHHHHHHC
Q 011652 291 DTFLEMEKN 299 (480)
Q Consensus 291 ~~~~~~~~~ 299 (480)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666555543
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.36 E-value=71 Score=28.00 Aligned_cols=126 Identities=13% Similarity=0.193 Sum_probs=60.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHcCCCCChhhH-------HHHHHHHHhcCCHHHHHHHHHH----hhhCCCCccHHHHH
Q 011652 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY-------GIMVDVLCKAGRVDEALGIVKS----MDSTVCRPTSFIYS 274 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 274 (480)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|++..--+.... |.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 334445566666777777776666655554433 3355566666665443333322 22222122333444
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011652 275 VLVHTYGV-ENRIEDAVDTFLEMEKNGILA-----DVAMYNALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 275 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
.++..+.. ...++..+.+.....+....- ....-.-++..+.+.|.+.+|..+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44444432 233444444444443221110 1112234566777778887777665443
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.44 E-value=27 Score=28.79 Aligned_cols=52 Identities=10% Similarity=-0.016 Sum_probs=35.2
Q ss_pred hCCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 352 GRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
..++.+......+.+.+ ...|++.+|..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444444444 45678888888888888888888888887777664
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.93 E-value=38 Score=24.26 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=22.1
Q ss_pred HhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011652 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
.+...|++++|..+.+.+ ..||...|..+.. .+.|-.++...-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344445555555544433 2344444444322 23344444444444444443
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.57 E-value=39 Score=33.57 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred hCCChHHHHHHHHHHHh-cCCCCHHH
Q 011652 352 GRGETDEAYRVFRRMIK-LCEADADT 376 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~-~~~~~~~~ 376 (480)
+.++..+|.+.+-.+.+ ...|...-
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 34666666555544444 44444433
No 380
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.23 E-value=1.4e+02 Score=30.14 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
.+|-.|.++|++++|.++..............+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3444566667777776666555555455555566666666553
No 381
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.16 E-value=93 Score=28.07 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=31.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSK---GVAPNSRTC--NIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
++...-+.++.++|.+.++++.+. --.|+.+.| ..+..++...|+..++.+.+....+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333444555666777776666543 123344333 2334445556666666666666554
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.03 E-value=38 Score=23.52 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
+.+++....+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 45566666666644 44444444443345677888888888776 44 3346777777777776655543
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.60 E-value=11 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.|..+...+...|++++|...+++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555566666666555554
No 384
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.81 E-value=56 Score=26.52 Aligned_cols=23 Identities=4% Similarity=-0.039 Sum_probs=15.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456677777777777777665
No 385
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.47 E-value=26 Score=21.06 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=22.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777777766665553
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.02 E-value=64 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
.+-.|.+.|.+++|.+++++.... |+......-+....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 345567777777777777776653 3444434444444433
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.95 E-value=1.2e+02 Score=28.61 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHhhcC-CCCChhhHHHHHHHhhcC
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 213 (480)
.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++.-... ...+..- .+.+...+..
T Consensus 38 pL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHh
Confidence 34444556665433 3334444444322 1122344555677777666666543211 0001111 1222333344
Q ss_pred CChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVT--YGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++
T Consensus 113 ~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 113 KKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred CCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 554 34455556665554322 1233445556677655544443
No 388
>PRK10941 hypothetical protein; Provisional
Probab=64.56 E-value=1e+02 Score=27.15 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=35.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+-.+|.+.++++.|+++.+.+..-.|.++.-+..-.-.|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444556666666666666666665555665555555666666666666666665554
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.31 E-value=51 Score=23.65 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011652 76 AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
++++|.-+-+|+..... ....+--.-+..+...|+|++|..+.+.+. .|+...|..|- -.+.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~---~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC---YPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC---CchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 34478888888865532 122222233456677888888888776541 25666555443 346677777777777
Q ss_pred HHHhcCCCCCHHHHH
Q 011652 156 VMQKYGVTQNLAAFN 170 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (480)
+|...| .|....|.
T Consensus 93 rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG-DPRLQTFV 106 (115)
T ss_pred HHHhCC-CHHHHHHH
Confidence 777666 45544443
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.19 E-value=18 Score=33.95 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=32.5
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 316 CKANKFKNVYRVLKDMNSKGVAPNSRTC-NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
.+.++++.|..++.+..+. .|+...| ..=..++.+.+++..|+.=+..+.+..+-....|-.-..++...+.+.+|.
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 3344455555555555443 2322222 111234444444444444444444322222222322233333334444444
Q ss_pred HHHHHH
Q 011652 395 KVWKYM 400 (480)
Q Consensus 395 ~~~~~~ 400 (480)
..|+..
T Consensus 93 ~~l~~~ 98 (476)
T KOG0376|consen 93 LDLEKV 98 (476)
T ss_pred HHHHHh
Confidence 444433
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.85 E-value=68 Score=24.96 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCC-hhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPN-LPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
|.++.-....+.+.-...+++.+.. ....+...|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555555555544422 012234455555555544444 333445555555555555555666666
Q ss_pred HHHHh
Q 011652 243 DVLCK 247 (480)
Q Consensus 243 ~~~~~ 247 (480)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55544
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.25 E-value=66 Score=24.32 Aligned_cols=41 Identities=5% Similarity=-0.058 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011652 115 IMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 115 ~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
.+.++|..|..+++ .....|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433 333344444444444444444444443
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.89 E-value=22 Score=22.76 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
-...++.+|...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555555566666655555544
No 394
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.26 E-value=1.9e+02 Score=29.34 Aligned_cols=181 Identities=8% Similarity=-0.022 Sum_probs=85.5
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 213 DPNLPRAREIFREMVDTG-CNPD--IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
..+.+.|..++....... ..+. ...+..+.......+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 344566777776653322 1111 1122223222222222344445444433221 2333334444444566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------------CCCCC------hhh--------H
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------------GVAPN------SRT--------C 343 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~p~------~~~--------~ 343 (480)
...+..|....- ....-.-.+.+++...|+.++|...|+.+... |..+. ... -
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 777766644321 23344445556666677777777777665331 11100 000 0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
..-+..+...|....|...+..+... .+......+.....+.|..+.+.....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 11123345556666776666666553 334444455555555666666555443
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.24 E-value=22 Score=18.41 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHH
Q 011652 356 TDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
.+.+..+|+++....+.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444433334444433
No 396
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=60.91 E-value=1.1e+02 Score=26.60 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=41.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 414 VLINGLCDKGIVSDSCVLLEDMIEKG-IRP-----SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
.++.-|.+.|+.+.|-.++-=+...+ ... +......++......|+|+-+.++.+-+..++++.
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 45556666666666666555444322 121 23334466777788899999999999998888753
No 397
>PRK10941 hypothetical protein; Provisional
Probab=60.47 E-value=1.2e+02 Score=26.68 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=26.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
+-.+|.+.++++.|+.+.+.+..-.|.++.-+.--.-.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33344444555555555555544444444444444444444555555544444443
No 398
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.19 E-value=1.6e+02 Score=28.07 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhc
Q 011652 353 RGETDEAYRVFRRMIKLCEADAD----TYTMMIKMFCQGG----ELEKAFKVWKYMKLKRFIPSMHTFSVLING--LCDK 422 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~ 422 (480)
.|++++|+.++-.+.. +.||.. -|..+++.+.... ..-...+-++..++.-+-.+...|..--.+ ..+.
T Consensus 711 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 711 EGRLDEALSVLISLKR-IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred cccHHHHHHHHHhhhc-cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 4788888888766543 556653 4666777765432 111122222222222111222333222222 2345
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGET--FGKLRKLLIK 456 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~ 456 (480)
.++.+|+++|+++.+.+-+..+.| ...-+.++.+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 789999999999986543333333 3344444433
No 399
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.96 E-value=1.3e+02 Score=26.83 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=38.0
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNSR----TCNIILNGLIGRGET-DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (480)
..+...+++.....++-.+..--|+.. .|..++++-.-..+- --|.+.++. ..+|..|+.+++..|+
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh--------lK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH--------LKQYAPLLAAFCSQGQ 336 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH--------HHhhhHHHHHHhcCCh
Confidence 334445666665554443433445554 455555543322111 112233333 3468889999999998
Q ss_pred HHHHH
Q 011652 390 LEKAF 394 (480)
Q Consensus 390 ~~~a~ 394 (480)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 76544
No 400
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.92 E-value=34 Score=21.11 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 456678889999999999998887 478887766665443
No 401
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.80 E-value=1.2e+02 Score=31.25 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=71.5
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
...|+.+.|++.-..+- +..+|..|.......|+.+-|+..|++... |+.|--.|.-.|+.++-.+
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHH
Confidence 45677777665544432 456777777777777887777777776553 4445555666777777766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
+.+.+..++ |..+ ....-.-.|+.++-.++++.. |..| ..|. .....|.-++|.++.++..+
T Consensus 720 m~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIRN---DATG---QFQNALYLGDVKERVKILENG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 666554331 2211 111122336666666666543 3222 1111 12235666777777776655
No 402
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.00 E-value=1.1e+02 Score=25.80 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=11.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 011652 418 GLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
...+.|+.++|.+.|.++...+
T Consensus 174 L~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 174 LNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHhCCHHHHHHHHHHHHcCC
Confidence 3445555555555555555443
No 403
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.72 E-value=91 Score=30.97 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhCCChHH------HHHHHHHHHhcCCCCHHHHHHHH
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSK--GVAPNSRTCNIILNGLIGRGETDE------AYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
+++.+|...|++-.+.++++..... |-+.-...+|..++...+.|.++- |.+.++.. ....|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a--~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA--RLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hcCCcchHHHHHH
Confidence 6778888888888888888887664 222233457777777777776542 22222222 2455666776666
Q ss_pred HHHHh
Q 011652 382 KMFCQ 386 (480)
Q Consensus 382 ~~~~~ 386 (480)
++-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 55443
No 404
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=58.52 E-value=2.6e+02 Score=29.88 Aligned_cols=324 Identities=7% Similarity=0.033 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH----HHHHH---HHhC---CHHHHHHHHHHHHhcCCCCCHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI----IMRKY---ARVQ---KVEEAVYTFNVMQKYGVTQNLAAF 169 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----li~~~---~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 169 (480)
+-++=+++...+.+++|...|+++...-|.-.+.|.+ -|..+ ...| .+++|+.-|+.+... +--+--|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 555 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEY 555 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHH
Confidence 4445577788888999999999998776533333332 22222 2334 366777777776542 2222334
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChh----------------------hHHHHHHHhh---cCCChhHHHHHHH
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK----------------------TYSILLEGWG---KDPNLPRAREIFR 224 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~---~~~~~~~a~~~~~ 224 (480)
-.-.-.|-+.|++++-.+.+.-..++.+..+. +|.-++-+.- +.-...+-.++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 44444678888888877777666553322211 1111111111 1112223344444
Q ss_pred HHHHcCCCCChh--------h-----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHH
Q 011652 225 EMVDTGCNPDIV--------T-----YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291 (480)
Q Consensus 225 ~~~~~~~~~~~~--------~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (480)
.+..+ .+|... + +..++... .|..---.+++++.... ++-.+......+.+..|.++-+.+
T Consensus 636 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 709 (932)
T PRK13184 636 ILYHK-QQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQ 709 (932)
T ss_pred HHHhh-ccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHH
Confidence 44432 222221 1 11122111 23333444555555442 344555555566678888887776
Q ss_pred HHHHHHHCC----CCCCH--------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChH
Q 011652 292 TFLEMEKNG----ILADV--------AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETD 357 (480)
Q Consensus 292 ~~~~~~~~~----~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~ 357 (480)
....+.+.- .+.+. ..|-.-+.++....+++++.+.+... +|. ...+..++.-+...++.+
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 784 (932)
T PRK13184 710 FSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGE 784 (932)
T ss_pred HHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccch
Confidence 666655321 11111 11222234444455565555433322 222 223344444444455656
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
....+.+.+.....+.. ......+.+|.-..++++|-+++......-...+ ...+.....-++-.++.+-|...|.
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (932)
T PRK13184 785 SIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFS 864 (932)
T ss_pred HHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHh
Confidence 55555555555222222 2345567788888899999999976544322211 2222222223344566677777776
Q ss_pred HHH
Q 011652 434 DMI 436 (480)
Q Consensus 434 ~~~ 436 (480)
...
T Consensus 865 ~~~ 867 (932)
T PRK13184 865 GCR 867 (932)
T ss_pred hcc
Confidence 665
No 405
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.30 E-value=1.8e+02 Score=28.00 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Q 011652 82 CFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV-QKVEEAVYTFNVMQKY 160 (480)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~ 160 (480)
.+|+.+.. .++.|+..|...+..+-+.+.+.+...+|..|....|.++..|.....-.-.. .+++.|..+|..-...
T Consensus 92 ~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 92 FLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34444433 24458888888887777777788888888888877776666665544443333 3477888887776665
Q ss_pred CCCCCHHHHHHHH
Q 011652 161 GVTQNLAAFNGLL 173 (480)
Q Consensus 161 ~~~~~~~~~~~ll 173 (480)
+ +.++..|....
T Consensus 170 n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 170 N-PDSPKLWKEYF 181 (568)
T ss_pred C-CCChHHHHHHH
Confidence 4 34444454443
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.27 E-value=38 Score=20.31 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=12.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011652 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 172 (480)
.|-..++..+++.|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 33444444444444444444444444433
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.14 E-value=79 Score=23.90 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011652 63 PEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 63 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 122 (480)
..-+..+--.+...-..+.++|..+..+.-....+..|......+...|++++|.++|+.
T Consensus 65 D~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444555555555589999999987665567888999999999999999999999975
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.17 E-value=2.2e+02 Score=28.74 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHhhCcH-HHHHHHHHHhh-cCCCCCC--HHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC----CCCHHHHHHHHHHH
Q 011652 71 EKFRNAGT-LAFCFFKWAEK-QQNYEHS--VRAYHSM-IESLAKIRQYQIMWDLVNAMRTKR----MLNVETFCIIMRKY 141 (480)
Q Consensus 71 ~~~~~~~~-~a~~~~~~~~~-~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~ 141 (480)
+.+.+.+. .|++..+...+ ..+++.+ ...+..+ +..+...+++..|.+.++.+.... .+...++..++.+.
T Consensus 108 ~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 108 RIYFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 33333333 46666655432 2222222 2333333 333333478888888888775432 24445555555555
Q ss_pred HH--hCCHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHH--ccCChhhHHHHHHHhh
Q 011652 142 AR--VQKVEEAVYTFNVMQKYG---------VTQNLAAFNGLLSALC--KSKNVRKAQEIFDCMK 193 (480)
Q Consensus 142 ~~--~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 193 (480)
.. .+..+++.+.++.+.... -.|...+|..++..++ ..|+++.+...++++.
T Consensus 188 l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 355666777766663321 1334556666665544 4667667766666654
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.74 E-value=13 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
.|.-..|.++|++|.+.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3556667778888888877776 566666543
No 410
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.90 E-value=2.6e+02 Score=29.13 Aligned_cols=262 Identities=10% Similarity=0.046 Sum_probs=131.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC---------------CCCHHHH----HHHHH--HHHHhCCHHHHHHHHHHHHhcCC
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKR---------------MLNVETF----CIIMR--KYARVQKVEEAVYTFNVMQKYGV 162 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~----~~li~--~~~~~~~~~~a~~~~~~~~~~~~ 162 (480)
|.-..+.|+++.|..++++...+- .|..... -.+.. ......++++|..++.++...-.
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 344457788888888887762211 1111111 11222 33456788888888877754321
Q ss_pred CCCH-------HHHHHHHH-HHHccCChhhHHHHHHHhhcC-----CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 163 TQNL-------AAFNGLLS-ALCKSKNVRKAQEIFDCMKDR-----FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 163 ~~~~-------~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
.|+. ..++.+-. .....|++++|.++-+..... ..+....+..+..+..-.|++++|..+..+..+.
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 2221 12333322 223467788888877776552 3345566777777788889999998888776654
Q ss_pred CCCCChhhHHHHH-----HHHHhcCCH--HHHHHHHHHhhhC---CCC---ccHHHHHHHHHHhhcc-CCHHHHHHHHHH
Q 011652 230 GCNPDIVTYGIMV-----DVLCKAGRV--DEALGIVKSMDST---VCR---PTSFIYSVLVHTYGVE-NRIEDAVDTFLE 295 (480)
Q Consensus 230 ~~~~~~~~~~~l~-----~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 295 (480)
.-.-+...+.... ..+...|.. .+....+...... ..+ +-..++..+..++.+. +...++..-+.-
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~ 606 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEV 606 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchh
Confidence 2233443333222 234455632 2222333322211 001 1122334444444431 112222222222
Q ss_pred HHHCCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh-H---HHHHH--HHHhCCChHHHHHHHHH
Q 011652 296 MEKNGILADVAMY--NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT-C---NIILN--GLIGRGETDEAYRVFRR 365 (480)
Q Consensus 296 ~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~---~~l~~--~~~~~~~~~~a~~~~~~ 365 (480)
-......|-...+ ..++......|+.++|...+.++......++... | ...+. .....|+.+.+.....+
T Consensus 607 ~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 607 GSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222222 2566777888999999998888876533332111 1 11122 23456777777766655
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.70 E-value=1.5e+02 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
.++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 466777778888888888877776553
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.52 E-value=49 Score=20.42 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 412 (480)
-.+.-++.+.|++++|.+..+.+.+.. |+..-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~e--P~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIE--PDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT--TS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhC--CCcHHH
Confidence 345667788888888888888888754 554433
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.16 E-value=74 Score=31.56 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChh------hHHHHHHHhhcCCCCChhhHHHH
Q 011652 135 CIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNGLLSALCKSKNVR------KAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
.+|+.+|...|++..+.++++.+...+ -+.-...+|..|+...+.|.++ .|.+++++.. ..-|..||..|
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all 109 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHH
Confidence 388999999999999999999887653 2333456788888888888754 3444444433 34477888888
Q ss_pred HHHhhcCCChhHHHHHHHHHHH
Q 011652 207 LEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
+++...--+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8876654443444445555543
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.08 E-value=16 Score=27.72 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=26.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
....|.-.+|..+|++|++.|-+||. |..|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999988875 66776543
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.72 E-value=76 Score=22.35 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011652 382 KMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~ 401 (480)
......|++++|...+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33444455555555555443
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.46 E-value=77 Score=22.33 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=13.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444556666666666666543
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.12 E-value=42 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 143 (480)
+...++.++...++..-.++++..+.+....|..+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 444555555555555556666666666666655555555555555544
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.05 E-value=24 Score=31.66 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
|.++.|++.+...++..++....|..-..++.+.+....|++=+....
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 344444444444444444444444444444444444444444444433
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.20 E-value=1.1e+02 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
.+|+-+.+.+.+++..-|..++.++.
T Consensus 101 ~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 101 TLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33444444344444444444444433
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.68 E-value=35 Score=30.15 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
+..|....+.|++++|+.+++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444455555555555555555554443
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.41 E-value=43 Score=21.47 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 425 VSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 425 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.++..++++.++.. +-|..--..++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555432 23444455789999999999999999988754
No 422
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.62 E-value=1.2e+02 Score=26.94 Aligned_cols=58 Identities=12% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+...+.+|+.+.. |+.-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc----ChhhhHHHHHHHHH
Confidence 45677777888888888888888778888888888888888774 33336666666653
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.09 E-value=41 Score=29.70 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 163 (480)
|+..|....+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345666666666666666666666665544
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.99 E-value=1e+02 Score=23.98 Aligned_cols=60 Identities=20% Similarity=0.082 Sum_probs=31.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
+.+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445554432 223345555555555666666666666655555555444555555555
No 425
>PRK09857 putative transposase; Provisional
Probab=49.69 E-value=1.8e+02 Score=26.06 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
.++....+.++.++..++++.+.+. .++.......+..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445554455555544443 122223333444555555555566677777776666543
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.60 E-value=3.4e+02 Score=28.63 Aligned_cols=39 Identities=3% Similarity=0.049 Sum_probs=24.6
Q ss_pred HhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011652 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (480)
.|+.....+-+..+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 445566677777777777755545555666666665553
No 427
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.59 E-value=1.2e+02 Score=23.35 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 371 EADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.++..+-..+..++.+..+ ..+...+++.+.+...+- .-.....|.-++.+.|+++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5666666677777777554 556677777777522211 2233344556777888888888888887764
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.37 E-value=93 Score=29.17 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=26.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh-------c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIK-------L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
+++..+-.||+..|+++++.+.- . ..-...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566555555554421 0 11122344445555555555555555555443
No 429
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.71 E-value=32 Score=30.39 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
.+..|+..|...+....+.|.+.+...+|.++.+..|.+.+.|.. --.-+...++++.+..+|..-...+ +.++..|-
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 455688889888888888888999999999998888877777654 3344566788899999988877765 44555554
Q ss_pred HH
Q 011652 171 GL 172 (480)
Q Consensus 171 ~l 172 (480)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 43
No 430
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.63 E-value=2.4e+02 Score=26.36 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=38.6
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011652 201 KTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS 263 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (480)
..+.-+.+.|..+|+++.|++.|.+..+-- .+-....|..+|..-.-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 346667777778888888888887754321 111233444555555566777777666666654
No 431
>PRK12798 chemotaxis protein; Reviewed
Probab=47.29 E-value=2.5e+02 Score=26.41 Aligned_cols=198 Identities=11% Similarity=0.054 Sum_probs=112.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHh-hccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GVENRIEDAVDTFLEMEKN--GILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
.|+..++.+.+..+.....++....|..|+.+- ....+...|+++|+...=. |--........-+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 688889999998887777777777777777654 4556788899998886532 2122234455555566788888887
Q ss_pred HHHHHHHHhCC-CCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 325 YRVLKDMNSKG-VAPNS-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD--ADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 325 ~~~~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
..+-.....+- ..|-. ..+..+...+.+.++-..- ..+..+.....|. ...|..+.+.-.-.|+.+-|...-++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 77766655541 11111 1222333344444432222 2244444422332 457778888888888888888777776
Q ss_pred HhCCCCCCHH-HHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 011652 401 KLKRFIPSMH-TFSVLING--LCDKGIVSDSCVLLEDMIEKGIRPSGET 446 (480)
Q Consensus 401 ~~~~~~p~~~-~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 446 (480)
....-..+.. .-..+-.+ -.-..+++++.+.+..+-...+.|...-
T Consensus 284 ~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 284 LKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 6542111111 11111111 2234557777777766655555554443
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.16 E-value=2.9e+02 Score=27.19 Aligned_cols=154 Identities=16% Similarity=0.061 Sum_probs=89.4
Q ss_pred cCChhhHHHHHHHhhcCCCC------------ChhhHHHHHHHhhcCCChhHHHHHHHHHH-------HcCCCCC-----
Q 011652 179 SKNVRKAQEIFDCMKDRFIP------------DSKTYSILLEGWGKDPNLPRAREIFREMV-------DTGCNPD----- 234 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~----- 234 (480)
...+++|...|.-......| .+.+.-.+...+...|+.+.|..++++.+ .-.+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34466777777665543232 33445556667777888777666665543 2222221
Q ss_pred --------hhhHHH---HHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHCC--
Q 011652 235 --------IVTYGI---MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG-VENRIEDAVDTFLEMEKNG-- 300 (480)
Q Consensus 235 --------~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-- 300 (480)
-..|.+ -|..+.+.|.+..|+++.+.+.+.....|+.....+|+.|+ +..++.=.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 112222 24456778999999999999988876657777778888775 5667777777777764432
Q ss_pred -CCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHH
Q 011652 301 -ILADVAMYNALIGAFCKANK---FKNVYRVLKDMN 332 (480)
Q Consensus 301 -~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 332 (480)
..|+-..-.++...|..... -+.|...+.+..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 33443333334444444333 334444444443
No 433
>PRK09857 putative transposase; Provisional
Probab=46.98 E-value=1.5e+02 Score=26.48 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 408 (480)
+..++......++.++..++++.+.+..+.......++..-+.+.|.-+++.++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666777666654444445555666777777777778888888888886644
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.37 E-value=1.3e+02 Score=26.87 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 352 (480)
.++++.+...++.|.-.++..+.-.+.+.=...++..+|+.+... +.-|..++..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 567888888899999999998888888888899999999998863 3336666666653
No 435
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=46.22 E-value=59 Score=19.89 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=26.1
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhhCcHHHHHH
Q 011652 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCF 83 (480)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~ 83 (480)
....|++.|+.++.+.+..++..+.+.-.+|.++
T Consensus 17 ak~~L~k~GIeLsme~~qP~m~L~~~VM~eAYEl 50 (56)
T PF10815_consen 17 AKEELDKKGIELSMEMLQPLMQLLTKVMNEAYEL 50 (56)
T ss_pred HHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999998888776655555443
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.00 E-value=2.7e+02 Score=26.43 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 388 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+.+.|...+..|.+.|..|....-..+..++-.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5566666666666666655544444434444333
No 437
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.86 E-value=1.2e+02 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777665
No 438
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.81 E-value=2e+02 Score=24.78 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=18.3
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 206 LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
+++.+-+.++++++...+.++...+...+..--+.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444444555555555555555554444444444444443
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=2.3e+02 Score=25.58 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH---
Q 011652 83 FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RM-LNVETFCIIMRKYARVQKVEEAVYTFNVM--- 157 (480)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~--- 157 (480)
+++.+......+.|...++.+... ...++++..+..+...+. |- --.+++......|++.|+.+.|.+.+...
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344443444445555555555432 222333333334433332 11 23345555666677777777776666443
Q ss_pred -HhcCCCCCHHHHHHHH
Q 011652 158 -QKYGVTQNLAAFNGLL 173 (480)
Q Consensus 158 -~~~~~~~~~~~~~~ll 173 (480)
...|...|+..+..-+
T Consensus 134 tvs~g~kiDVvf~~iRl 150 (393)
T KOG0687|consen 134 TVSLGHKIDVVFYKIRL 150 (393)
T ss_pred HhhcccchhhHHHHHHH
Confidence 3345555655544333
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.35 E-value=60 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=17.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 144 (480)
+..+...++.-.|.++++.+.+.++ .+..|....+..+...
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3333334334444444444444444 3333333333333333
No 441
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=45.34 E-value=2e+02 Score=24.68 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=77.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
-+..|.+.-++.-|....+++.+ ...+-. .+--|.+..+.+-..++.+-....++.-+..-...++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----PIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----PIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----hHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34455555555555544444443 111112 2223555555544444554444445544444444444 345677
Q ss_pred hHHHHHHHHHHHhc-------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 356 TDEAYRVFRRMIKL-------------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 356 ~~~a~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...|+.-++.-..+ ..|.+.....+++.|.. +++++|.+++.++-+.|+.|. ...+.+.+.+
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 77777766655441 35778888888877654 689999999999999998864 3444555554
No 442
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=44.68 E-value=85 Score=20.87 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 011652 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (480)
+.+.|..++..+....+.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 456666677766666667777888777766554
No 443
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.60 E-value=3.7e+02 Score=27.63 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
....+...|+.+.-.|++++|-...-.|... +..-|...+..++..++......+ +.......+..+|..++..
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve 464 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVE 464 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHH
Confidence 4567888899999999999999888887655 556666666666666655543332 2322222355667777766
Q ss_pred HHc
Q 011652 176 LCK 178 (480)
Q Consensus 176 ~~~ 178 (480)
+..
T Consensus 465 ~L~ 467 (846)
T KOG2066|consen 465 FLA 467 (846)
T ss_pred HHH
Confidence 655
No 444
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.47 E-value=2.6e+02 Score=25.90 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=40.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhh-ccCCHHHHHHHHHHHHH
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG-VENRIEDAVDTFLEMEK 298 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 298 (480)
+..+.+.|.+..|+++.+.+...+..-|+.....+|+.|+ +.++++-.+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4567778888888888888888765546666667777664 56667767777766544
No 445
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.35 E-value=3.5e+02 Score=27.33 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+......++.++.. |+...++.+++.+.+.|..+.
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444455555444 788889999998888875543
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.10 E-value=1.7e+02 Score=25.26 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=10.7
Q ss_pred HHHHhhccCCHHHHHHHHHHH
Q 011652 276 LVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~ 296 (480)
+...|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555544
No 447
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.95 E-value=2e+02 Score=24.39 Aligned_cols=66 Identities=9% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHH--HHHHHHHHHhCCHHHHHHHHHHH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETF--CIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~--~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.+.+.....|.|+--|.-...+.+|...|..-..-.+ .+..++ ..-|+.....|+.+.|++....+
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 3334444455554444444444444444433211111 222222 23444455666666666655554
No 448
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.58 E-value=1.2e+02 Score=21.71 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011652 117 WDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 117 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
.+.++++...+. ..+-....|.-.|++.|+.+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 334444443333 2233333344444444444444444443
No 449
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=43.27 E-value=4e+02 Score=27.62 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA---RVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
-+...+..||..+.+.|++++...--..|.+.-+.++..|...+.... ..+....+..+|++....- .++..|.-
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 356677788999999999999998888888888888888877776554 3467777888887776543 23333433
Q ss_pred HHHHH-------HccCChhhHHHHHHHhhc
Q 011652 172 LLSAL-------CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 172 ll~~~-------~~~~~~~~a~~~~~~~~~ 194 (480)
.+..+ -+.++++....+|.+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33322 234667778888887765
No 450
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.08 E-value=93 Score=20.26 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+....++.++..+++..-.++++..+.+....| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455678888888888888999999999988888 4667777666666554
No 451
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=2.3e+02 Score=28.28 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
...|--+|....+.+.|.++++++.+.+.. ++.+--.+..+....|..++|+.+....
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344445555555555666665555554321 3333333444455555555555554443
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.61 E-value=3e+02 Score=26.08 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHhhhCCCCcc
Q 011652 249 GRVDEALGIVKSMDSTVCRPT 269 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~ 269 (480)
++.+.|+..+..|...|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444555555555554444443
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.53 E-value=2.6e+02 Score=25.22 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhC--C---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 011652 114 QIMWDLVNAMRTK--R---MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188 (480)
Q Consensus 114 ~~a~~~~~~~~~~--~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 188 (480)
+.|.+.|+..... . ..++.....++...++.|+.+.-..+++.... .++......++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 4555555555543 1 23445555555555555555544444444443 33455556666666666666666666
Q ss_pred HHHhhc
Q 011652 189 FDCMKD 194 (480)
Q Consensus 189 ~~~~~~ 194 (480)
++.+..
T Consensus 224 l~~~l~ 229 (324)
T PF11838_consen 224 LDLLLS 229 (324)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 666655
No 454
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.42 E-value=3.1e+02 Score=26.08 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
|-.+.-|...|+..+|-+...++...+-.+...-..++.+....-.-...+.++.+-... +...-..+..++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~----glissSq~~kGfsr~~ 293 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREE----GLISSSQMGKGFSRKG 293 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhh----cchhhhccccCchhhc
Q ss_pred --------CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 250 --------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 250 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
+...|...|+.+.-....-.-..-+.+-..-...|+.+. .+.|++-... +|+-|...|+.
T Consensus 294 ~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~-----------IIqEYFlsgDt 361 (645)
T KOG0403|consen 294 GSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP-----------IIQEYFLSGDT 361 (645)
T ss_pred cccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH-----------HHHHHHhcCCh
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHH------------------------
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY------------------------ 377 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 377 (480)
.+..+.++++-.....|-...+..-+..-.+...-+-|-.++..+.-..-++...-
T Consensus 362 ~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~el 441 (645)
T KOG0403|consen 362 PEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQEL 441 (645)
T ss_pred HHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHH
Q ss_pred -----------------------------------------------------------------------HHHHHHHHh
Q 011652 378 -----------------------------------------------------------------------TMMIKMFCQ 386 (480)
Q Consensus 378 -----------------------------------------------------------------------~~l~~~~~~ 386 (480)
..|+.-|..
T Consensus 442 alFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~ 521 (645)
T KOG0403|consen 442 ALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYEL 521 (645)
T ss_pred HHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHh
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.|++.+|...++++----+. ....+.+++.+.-+.|+-...+.++++.-..| ..|.+.+-++|.|
T Consensus 522 ~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 522 SGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred ccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
No 455
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.41 E-value=2.1e+02 Score=24.15 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
.....+.|+.++|.+.|..+...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 33344455555555555554443
No 456
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=41.95 E-value=2.8e+02 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...++.+.. .|+..+|..+++.+.+.|.+| ......+...+
T Consensus 247 i~~l~~ai~-~~~~~~a~~~~~~l~~~~~~~-~~il~~l~~~~ 287 (355)
T TIGR02397 247 LIELLEAIL-NKDTAEALKILDEILESGVDP-EKFLEDLIEIL 287 (355)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 334555544 488999999999998877544 33444444333
No 457
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.85 E-value=2.6e+02 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~ 396 (480)
.-|+..|..+..+|.-.|+...+.+-
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46777778888888777766655533
No 458
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.83 E-value=2.3e+02 Score=24.39 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=33.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHh
Q 011652 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK-ANKFKNVYRVLKDMNS 333 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~ 333 (480)
.++..+...|+++++...++++...+...+..--+.+-.+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3556666777777777777777777666666666666555533 3444445555554443
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.49 E-value=4.2e+02 Score=29.11 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=75.7
Q ss_pred hcCCHHHHHH------HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHH-----HCCC--CCCHHHHHHHHH
Q 011652 247 KAGRVDEALG------IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME-----KNGI--LADVAMYNALIG 313 (480)
Q Consensus 247 ~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~--~~~~~~~~~li~ 313 (480)
..|.+.++.+ ++......-.++....|..+...+.+.|+.++|+..-.... ..|. ..+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3445554544 44433322234455667777777778888877776544331 1111 113334555544
Q ss_pred HHHHcCCHhHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cC---CCCHHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSK-----GV-APN-SRTCNIILNGLIGRGETDEAYRVFRRMIK-----LC---EADADTYT 378 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~---~~~~~~~~ 378 (480)
.....+....|...+.+.... |. .|. ..+++.+-..+...++.+.|.++++.+.+ .. -.+..++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 445555666666666555442 11 222 22333333333344667777777776655 11 13344555
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~ 396 (480)
.+.+.+...+++..|...
T Consensus 1104 ~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHhhhHHHHHHHHH
Confidence 565555555555554443
No 460
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.25 E-value=4.1e+02 Score=27.25 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
+......++.++.. ++...++.+++.+...|+.+.
T Consensus 245 d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 245 DKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 33444555555444 778888888888887775443
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.93 E-value=1.6e+02 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhC
Q 011652 111 RQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
++.-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334444445544444444 34333333334443333
No 462
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.84 E-value=3.4e+02 Score=26.08 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
...++|+.+...++. |+..... .......|+++.+.+.+......-.....+...+++..-+.|+++.|..+-+.|.
T Consensus 308 as~~~~~~lr~~~~~-p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 308 ASQQLFAALRNQQQD-PVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHHHHhCCCC-chhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 346788777666552 3433333 3445678999999998887654433667788899999999999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCC
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD 199 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 199 (480)
...++ ++.+........-..|-++++...++++..-.+|.
T Consensus 385 ~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 385 SNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 76654 44444333333445567888888888876643443
No 463
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.75 E-value=1.4e+02 Score=21.79 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 169 FNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55556666666666666666655544
No 464
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.54 E-value=2.6e+02 Score=25.58 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 356 TDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
.++...++..+++.+| --+.-|..+++.....|.++..+.+|++++..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455566665555332 1234577788888888888888888888888888877766666666554
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.09 E-value=87 Score=23.02 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=17.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhC
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
+...+..-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333444444455555544444 44444444444444443
No 466
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.97 E-value=3.1e+02 Score=25.43 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
...++.+. ..|+..+|..+++.+...|..| ......+.
T Consensus 238 if~l~~ai-~~~~~~~a~~~~~~l~~~~~~~-~~il~~l~ 275 (367)
T PRK14970 238 YINVTDLI-LENKIPELLLAFNEILRKGFDG-HHFIAGLA 275 (367)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 33355554 4578999999999988877555 34444443
No 467
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.47 E-value=2.2e+02 Score=23.63 Aligned_cols=50 Identities=28% Similarity=0.406 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD-TYTMMIKMFCQGGEL 390 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 390 (480)
...+.++..|...|+++.|-++|.-+....+.|.. .|..=+..+.+.+.-
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCc
Confidence 34566777778888888888888887774344433 233333444444433
No 468
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.85 E-value=3.8e+02 Score=26.07 Aligned_cols=39 Identities=5% Similarity=-0.049 Sum_probs=25.4
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011652 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 180 (480)
.+.++++.|..++..|...|..|....-..+..++-.-|
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 355788888888888888886666554444444443333
No 469
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.85 E-value=76 Score=23.61 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=17.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
+..+...+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 33333333344444444444444433343332233334444443
No 470
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.71 E-value=70 Score=30.26 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=31.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+..+.+.+.++.|..++.++.+..+.....|..-..++.+.+++..|+.=+..+++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 334445566666666666666655544444444445555666666666555555543
No 471
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.57 E-value=39 Score=30.38 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=59.2
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI-VTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 256 (480)
..|.+++|++.|.......++....|..-.+++.+.++...|++=++..... .||. .-|-.--.+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 4566777887777777766777777777777777778877777777766654 2332 222222233344677788877
Q ss_pred HHHHhhhCCCCccH
Q 011652 257 IVKSMDSTVCRPTS 270 (480)
Q Consensus 257 ~~~~~~~~~~~~~~ 270 (480)
.+....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777776654443
No 472
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.55 E-value=1.5e+02 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHH
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVE 132 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 132 (480)
++.+.++.-.++|+++++.|.++|-.+..
T Consensus 68 iD~lrRC~T~EEALEVInylek~GEIt~e 96 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRGEITPE 96 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 33445566666666666666666654443
No 473
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.51 E-value=1.8e+02 Score=25.10 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 011652 346 ILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~ 366 (480)
+...|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444555555555555544
No 474
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=38.34 E-value=4.3e+02 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
.++.. ...|+.+.|+.+++.+...|..|.
T Consensus 264 ~L~~a-i~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 264 DLFEA-LMRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHcCCCHH
Confidence 44443 345788888888888888775554
No 475
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.15 E-value=1.6e+02 Score=21.68 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=11.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
+..+.++...++|+++++.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333344444455555555555544
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.07 E-value=1.9e+02 Score=23.19 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=32.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011652 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
+...+..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-..
T Consensus 21 GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 21 NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 444444332 334444444555677777777777665556666555666666666543
No 477
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.05 E-value=3.9e+02 Score=29.28 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.....|..+...+-+.|+.++|+..=
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 44555666666666666666666543
No 478
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.66 E-value=1.4e+02 Score=20.88 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
|.|...-..+...+...|++++|.+.+-.+..
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444455555555555554444443
No 479
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.26 E-value=3.4e+02 Score=25.16 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
++......++.+.. .++...+..+++.+.+.|..|.
T Consensus 244 ~~~~~i~~l~~ai~-~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 244 LNEKQSFLLTDALL-KKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 45555666666654 4789999999999998775544
No 480
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.17 E-value=1.7e+02 Score=21.47 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
.||...|-+| +-.+.|-.+++...+.++..
T Consensus 68 ~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 3444444333 22344555555555554443
No 481
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.14 E-value=3e+02 Score=24.43 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
.+..+...|++.++.+.+.++.++.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3444455555555555555544443
No 482
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.95 E-value=2.9e+02 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.2
Q ss_pred hcCChhHHHHHHHH
Q 011652 109 KIRQYQIMWDLVNA 122 (480)
Q Consensus 109 ~~~~~~~a~~~~~~ 122 (480)
+++++++|.+++..
T Consensus 2 ~~kky~eAidLL~~ 15 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS 15 (260)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 34556666665543
No 483
>PLN03025 replication factor C subunit; Provisional
Probab=36.00 E-value=3.3e+02 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
......++... ..++++.|...+..+...|.+|.
T Consensus 225 ~~~i~~~i~~~-~~~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 225 PLHVKNIVRNC-LKGKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33344444443 34667777777777777775554
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.88 E-value=1.1e+02 Score=22.50 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666677778887777766666666666667777766543
No 485
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.78 E-value=2.5e+02 Score=23.17 Aligned_cols=171 Identities=6% Similarity=0.028 Sum_probs=87.6
Q ss_pred CCCCccHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 011652 264 TVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKNGILADV----AMYNALIGAFCKANKFKNVYRVLKDMNSKG 335 (480)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 335 (480)
.|..++...++.++..+.+. ++.+.+..+=.+....++.++- ...-.-+..|-+.||+.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 46677888888887777554 4455555555555555444432 223333456777788887777776655431
Q ss_pred CCCCh-hhH-HHHHHHHHhCC--ChHHHHHHHHHHHh-cCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 336 VAPNS-RTC-NIILNGLIGRG--ETDEAYRVFRRMIK-LCEADA-------DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 336 ~~p~~-~~~-~~l~~~~~~~~--~~~~a~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
-.++. ..+ ..+..++.+.- +..--.-.|.+... ..+.|. .+--+++..|-+..++.++.++++.+.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12211 111 11111221111 00000111211111 111111 12245666677777888888888877653
Q ss_pred CC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 404 RF--------------IPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 404 ~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
.+ .+.-...+.....|.+.|..+.|..++++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 21 12234556666777788888888777763
No 486
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.32 E-value=3e+02 Score=23.85 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=61.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHh-------cCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011652 347 LNGLIGRGETDEAYRVFRRMIK-------LCEADAD-----------TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 408 (480)
.+-+.+.|++.+|...++++.. .-+|... .+-.+-+++...|++-++++--.++..+.. -|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-ch
Confidence 3446788999999988887754 1223222 233444556667888888888888777643 36
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...|..-..+.+..=+.++|..=|...++.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 677776667777667788888888888764
No 487
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.14 E-value=1.6e+02 Score=20.65 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.+...-..+...+...|++++|++.+-.+.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 488
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.98 E-value=2.1e+02 Score=22.06 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 129 LNVETFCIIMRKYARVQ---KVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
++..+--.+.-++.+.. +..+.+.+++.+.+.. +|+ ....-.|.-++.+.++++.+.+..+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444555443 3455666666666522 222 12222334456666777777776666654
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.78 E-value=3.6e+02 Score=24.68 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 113 YQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
.+++..+++.+...-| .-...|..+++.....|.++.++.+|++.+..|..|-...-..++..+.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3566667776665443 2345678888888888989999999999998888887777777776654
No 490
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.74 E-value=4.5e+02 Score=25.81 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN 165 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (480)
.+......++.+.. .|+.+.|+.+++.+...|..|.
T Consensus 256 ~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 256 VDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 34444555555544 4889999999999999886554
No 491
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.74 E-value=3.5e+02 Score=24.52 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHhCCCchhHHHHHhh-CCCCCCHHHHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 011652 32 LDAAKSISKIMLSSPKVVLDTALDQ-SGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKI 110 (480)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 110 (480)
......+...++.....++...+.. ..+.+|.+.++.+...=...-.+--+..+.+++..|-.--...+-.....|++-
T Consensus 38 ~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqi 117 (393)
T KOG0687|consen 38 AAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQI 117 (393)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 3445667777777777777777654 567889888877665443222222333344444444223345677788899999
Q ss_pred CChhHHHHHHHHHHhCCC---CCHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccC
Q 011652 111 RQYQIMWDLVNAMRTKRM---LNVETFCIIMRK---YARVQKVEEAVYTFNVMQKYGVTQ----NLAAFNGLLSALCKSK 180 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~ 180 (480)
|+-+.|.+.++..-++.. .-.+..-.+|+. |....-+.+-++..+.+.+.|..- -..+|..+- +....
T Consensus 118 gDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR 195 (393)
T KOG0687|consen 118 GDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVR 195 (393)
T ss_pred ccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHH
Confidence 999999999988765543 223333333332 222222334444444555555322 233454443 33456
Q ss_pred ChhhHHHHHHHhhc
Q 011652 181 NVRKAQEIFDCMKD 194 (480)
Q Consensus 181 ~~~~a~~~~~~~~~ 194 (480)
++.+|-.+|-....
T Consensus 196 ~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 196 NFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHHHcc
Confidence 78888887776654
No 492
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.65 E-value=3.9e+02 Score=25.03 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=37.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChh--hHHHHHHHHH--hCCChHHHHHHHHHHHh
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSR--TCNIILNGLI--GRGETDEAYRVFRRMIK 368 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 368 (480)
..+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455788999999999998886 444443 3444444443 46677888888887765
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.30 E-value=1.6e+02 Score=20.47 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
++|+.....|+..|+.+|..++....-+--.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6677777777777777777777766666666666666666654
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.21 E-value=3.4e+02 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=12.1
Q ss_pred ccHHHHHHHHHHhhccCCHHHHH
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
-|+..|..+..+|...|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555555544443
No 495
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.79 E-value=5.5e+02 Score=26.46 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhCCCCcc---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcC
Q 011652 253 EALGIVKSMDSTVCRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA----------MYNALIGAFCKAN 319 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~~ 319 (480)
+--.++.+|...--.|+ ..+...++-.|....+++...++.+.+.+. ||.. .|...++--.+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 33445556655432333 344556666777777788888877777664 3221 1222222233456
Q ss_pred CHhHHHHHHHHHHhCC--CCCChhhHH-----H--HHHHHHhCCChHHHHHHHHHHHh
Q 011652 320 KFKNVYRVLKDMNSKG--VAPNSRTCN-----I--ILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~--~~p~~~~~~-----~--l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
+-++|+.+.-.++++. +.||..... - +-..|...+..+.|.++|++..+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 7777777766666542 344433211 1 11223445667777788877765
No 496
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.47 E-value=2.3e+02 Score=22.06 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 011652 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 144 (480)
.-.|.++++.+.+.++ .+..|....+..+...
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~ 65 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 3344444444444443 3333333333333333
No 497
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=3.2e+02 Score=23.66 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
+....+++...|++-++++.-.++....+.+...|-.-..+.+..=+..+|..-|....+..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 34445666778999999999999998888999999988888888889999999999888764
No 498
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.40 E-value=3.4e+02 Score=23.98 Aligned_cols=203 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhc----CCChhH
Q 011652 145 QKVEEAVYTFNVMQKYGVT-QNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGK----DPNLPR 218 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~~~~~~ 218 (480)
+++..+...+......+.. -....-...........+..+|..+|....+ + .......|...|.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHH--HHHHHHHHhhhCCCCccHHHHHHHHHHh----hccCCHH
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKA-----GRVD--EALGIVKSMDSTVCRPTSFIYSVLVHTY----GVENRIE 287 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~ 287 (480)
|..+|++..+.|..+...+...+...|... -..+ .|...+.+....+ +......+...| .-..+.+
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------------CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKAN---------------KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 352 (480)
+|...|...-+.|. ......+- .+...| +...|...+......+..........+-.....
T Consensus 209 ~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (292)
T COG0790 209 KAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSA 284 (292)
T ss_pred HHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhC
Q ss_pred CCChH
Q 011652 353 RGETD 357 (480)
Q Consensus 353 ~~~~~ 357 (480)
.+...
T Consensus 285 ~~~~~ 289 (292)
T COG0790 285 RGSGR 289 (292)
T ss_pred cCCCc
No 499
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=33.35 E-value=3.8e+02 Score=24.51 Aligned_cols=137 Identities=9% Similarity=0.049 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 011652 309 NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDE-AYRVFRRMIKLCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 309 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (480)
.-+.+.+++.++.+.+..+-+.+... |. .....+..++-...-.+. +..+.+.+... +|......++++.+..
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~l---P~-~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~ 243 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHL---PP-EVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSA 243 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhC---Ch-HHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCC
Confidence 44667788888777766666555543 33 344555555544443333 33344444433 8888888889988887
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLIN-GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 388 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
.........+..+.......+......+.. +.....+.+-...+++++-.. +|...|+.+..=+
T Consensus 244 ~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~---~~~~lF~qlfaDL 308 (340)
T PF12069_consen 244 PASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQ---DDQALFNQLFADL 308 (340)
T ss_pred CchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcc---cHHHHHHHHHHHH
Confidence 776666665666666543334444443332 222234455555555555432 2345555554433
No 500
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.33 E-value=2.3e+02 Score=22.04 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (480)
..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344555555555555544444444444444555443
Done!