Query 011652
Match_columns 480
No_of_seqs 671 out of 3181
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 12:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-36 8.8E-41 297.9 42.8 408 59-476 113-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-35 3.8E-40 293.4 38.7 405 61-475 82-547 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-29 9.7E-34 233.8 43.4 372 78-458 16-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-28 4.3E-33 229.4 47.7 367 103-476 5-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5E-35 246.4 24.5 202 219-420 9-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.1E-30 1E-34 244.2 25.5 205 183-387 7-223 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 1.2E-24 3.9E-29 206.9 39.6 361 95-462 24-443 (450)
8 2gw1_A Mitochondrial precursor 100.0 8.5E-25 2.9E-29 211.4 38.3 398 70-476 13-481 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.5E-24 3.2E-28 200.5 36.9 328 116-451 11-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.6E-23 5.3E-28 202.6 37.9 375 61-445 37-483 (514)
11 3fp2_A TPR repeat-containing p 99.9 8.8E-23 3E-27 198.5 41.3 398 65-476 27-494 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 5.5E-21 1.9E-25 175.5 39.2 332 96-456 2-352 (359)
13 3fp2_A TPR repeat-containing p 99.9 5.3E-21 1.8E-25 185.9 40.0 366 62-439 58-492 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 1.3E-20 4.4E-25 173.0 38.2 316 131-476 3-338 (359)
15 3hym_B Cell division cycle pro 99.9 3.4E-20 1.2E-24 168.2 30.0 286 95-419 20-314 (330)
16 3hym_B Cell division cycle pro 99.9 7E-20 2.4E-24 166.1 30.7 293 163-461 19-322 (330)
17 2xm6_A Protein corresponding t 99.9 8.2E-17 2.8E-21 154.2 50.8 332 79-438 61-432 (490)
18 2ooe_A Cleavage stimulation fa 99.9 1.2E-17 4E-22 161.8 40.7 405 62-475 12-494 (530)
19 1fch_A Peroxisomal targeting s 99.9 1.5E-19 5.3E-24 166.6 25.9 289 179-471 38-357 (368)
20 1fch_A Peroxisomal targeting s 99.9 9.2E-20 3.1E-24 168.1 23.7 263 169-435 67-356 (368)
21 2xm6_A Protein corresponding t 99.8 4.6E-16 1.6E-20 149.0 48.7 365 80-475 26-434 (490)
22 4eqf_A PEX5-related protein; a 99.8 1E-19 3.6E-24 167.6 20.1 269 199-470 64-353 (365)
23 4eqf_A PEX5-related protein; a 99.8 1.2E-19 4.1E-24 167.2 19.9 265 167-434 66-352 (365)
24 3cv0_A Peroxisome targeting si 99.8 5.3E-18 1.8E-22 153.4 26.2 278 97-400 21-312 (327)
25 3cv0_A Peroxisome targeting si 99.8 7.2E-18 2.5E-22 152.6 25.6 280 131-436 21-313 (327)
26 1b89_A Protein (clathrin heavy 99.8 9.7E-19 3.3E-23 158.0 19.0 290 65-397 8-305 (449)
27 2ooe_A Cleavage stimulation fa 99.8 3.4E-15 1.2E-19 144.5 43.4 373 59-438 42-492 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 9.3E-17 3.2E-21 142.0 27.5 195 235-438 65-264 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 4.7E-17 1.6E-21 144.0 25.0 252 139-404 7-265 (291)
30 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.6E-20 145.9 36.4 365 95-475 49-461 (472)
31 1b89_A Protein (clathrin heavy 99.8 5E-18 1.7E-22 153.4 16.7 284 108-431 14-304 (449)
32 1xi4_A Clathrin heavy chain; a 99.8 6.1E-15 2.1E-19 148.7 38.9 354 59-467 981-1339(1630)
33 4g1t_A Interferon-induced prot 99.8 4.3E-15 1.5E-19 141.7 33.6 361 64-439 52-460 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 5.9E-18 2E-22 165.1 11.5 151 199-354 126-286 (1134)
35 1xi4_A Clathrin heavy chain; a 99.7 3E-13 1E-17 136.7 44.6 317 100-465 1052-1376(1630)
36 3spa_A Mtrpol, DNA-directed RN 99.7 6E-18 2.1E-22 165.1 10.7 116 341-456 128-248 (1134)
37 2pl2_A Hypothetical conserved 99.7 5.8E-16 2E-20 130.9 20.4 200 94-297 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.7 3.1E-15 1.1E-19 130.2 24.5 226 200-438 5-236 (258)
39 3uq3_A Heat shock protein STI1 99.7 2.3E-15 7.9E-20 131.0 23.7 224 167-402 6-235 (258)
40 2pl2_A Hypothetical conserved 99.7 3.8E-15 1.3E-19 125.8 21.5 208 234-470 4-211 (217)
41 2h6f_A Protein farnesyltransfe 99.7 2.8E-14 9.5E-19 130.4 26.3 248 96-350 96-363 (382)
42 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-14 5.5E-19 136.2 25.5 368 78-473 20-421 (452)
43 3u4t_A TPR repeat-containing p 99.7 2.8E-14 9.5E-19 125.3 25.4 249 199-451 2-262 (272)
44 3u4t_A TPR repeat-containing p 99.7 1.9E-14 6.5E-19 126.4 24.2 191 137-332 9-206 (272)
45 2ho1_A Type 4 fimbrial biogene 99.7 3.8E-14 1.3E-18 122.9 25.7 200 97-299 37-238 (252)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.8E-15 9.7E-20 131.9 17.0 246 109-363 17-269 (275)
47 2vq2_A PILW, putative fimbrial 99.7 5.1E-14 1.8E-18 119.6 24.1 201 96-298 7-210 (225)
48 2q7f_A YRRB protein; TPR, prot 99.7 8.8E-15 3E-19 126.1 19.2 202 95-299 21-222 (243)
49 1ouv_A Conserved hypothetical 99.6 7.5E-13 2.6E-17 116.2 31.0 224 199-439 5-252 (273)
50 1ouv_A Conserved hypothetical 99.6 9.7E-13 3.3E-17 115.5 31.7 225 234-475 5-253 (273)
51 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5.2E-18 119.1 26.2 197 239-438 41-238 (252)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-14 6.2E-19 126.7 19.8 248 211-467 16-269 (275)
53 2h6f_A Protein farnesyltransfe 99.6 6.4E-14 2.2E-18 128.1 23.8 249 130-384 96-363 (382)
54 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7.2E-18 115.8 25.5 203 234-438 7-211 (225)
55 3e4b_A ALGK; tetratricopeptide 99.6 8.6E-14 2.9E-18 131.2 24.4 346 103-474 9-388 (452)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.4E-14 1.2E-18 122.4 19.9 125 170-296 27-151 (243)
57 4e6h_A MRNA 3'-END-processing 99.6 6.8E-12 2.3E-16 122.3 36.9 420 49-476 54-573 (679)
58 3sf4_A G-protein-signaling mod 99.6 5.2E-14 1.8E-18 131.3 18.5 303 129-460 7-363 (406)
59 3sf4_A G-protein-signaling mod 99.6 2.7E-14 9.1E-19 133.2 15.6 300 95-425 7-363 (406)
60 4a1s_A PINS, partner of inscut 99.6 3.5E-14 1.2E-18 132.8 16.0 276 170-473 52-372 (411)
61 2ond_A Cleavage stimulation fa 99.6 6E-12 2.1E-16 112.4 29.6 236 200-438 8-270 (308)
62 4a1s_A PINS, partner of inscut 99.6 5.3E-14 1.8E-18 131.6 16.6 278 130-438 47-372 (411)
63 2ond_A Cleavage stimulation fa 99.6 5.9E-12 2E-16 112.5 28.4 219 114-334 33-270 (308)
64 3ro2_A PINS homolog, G-protein 99.5 7.9E-14 2.7E-18 126.3 15.6 269 206-475 11-334 (338)
65 3ulq_A Response regulator aspa 99.5 8.5E-13 2.9E-17 122.1 22.6 233 241-476 109-371 (383)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.3E-12 4.4E-17 107.2 21.1 168 95-264 3-170 (184)
67 3vtx_A MAMA; tetratricopeptide 99.5 2.6E-12 9E-17 105.3 22.9 166 269-437 4-169 (184)
68 3ro2_A PINS homolog, G-protein 99.5 5.6E-13 1.9E-17 120.6 20.3 97 342-438 225-332 (338)
69 3ulq_A Response regulator aspa 99.5 1.4E-12 4.8E-17 120.6 21.8 229 206-437 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.4E-17 124.0 21.6 213 251-468 84-316 (474)
71 4abn_A Tetratricopeptide repea 99.5 1.7E-12 5.8E-17 123.2 20.6 213 182-398 84-316 (474)
72 4e6h_A MRNA 3'-END-processing 99.5 3.8E-10 1.3E-14 110.1 36.9 392 79-475 50-535 (679)
73 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.6E-18 122.0 13.2 249 199-476 26-310 (311)
74 3q15_A PSP28, response regulat 99.5 1.2E-11 4.3E-16 114.0 22.5 229 243-474 109-366 (378)
75 3nf1_A KLC 1, kinesin light ch 99.5 5.1E-13 1.7E-17 119.6 12.5 176 131-333 27-223 (311)
76 3q15_A PSP28, response regulat 99.4 3.7E-11 1.3E-15 110.8 24.6 229 205-437 106-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 3.4E-11 1.2E-15 98.5 20.9 168 306-476 9-176 (186)
78 3as5_A MAMA; tetratricopeptide 99.4 2E-11 6.7E-16 100.0 18.6 165 97-263 8-172 (186)
79 1hz4_A MALT regulatory protein 99.4 1.5E-10 5.2E-15 106.5 26.5 299 169-475 17-351 (373)
80 1hz4_A MALT regulatory protein 99.4 1.7E-10 5.7E-15 106.2 26.5 262 141-402 24-321 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.4 1.9E-11 6.4E-16 120.7 18.6 167 95-263 7-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.4 5.2E-11 1.8E-15 117.6 20.9 166 269-437 8-173 (723)
83 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.7E-15 98.6 20.2 198 268-476 5-212 (228)
84 4i17_A Hypothetical protein; T 99.3 3.1E-10 1.1E-14 96.4 21.5 197 233-439 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 3.8E-11 1.3E-15 105.6 14.4 228 246-474 12-282 (283)
86 3edt_B KLC 2, kinesin light ch 99.3 5.6E-11 1.9E-15 104.5 13.7 226 211-437 12-280 (283)
87 1qqe_A Vesicular transport pro 99.3 8.4E-10 2.9E-14 97.6 21.2 190 244-435 46-266 (292)
88 3mv2_B Coatomer subunit epsilo 99.2 5.8E-09 2E-13 90.5 24.2 161 237-403 102-282 (310)
89 3mv2_B Coatomer subunit epsilo 99.2 1.3E-08 4.4E-13 88.3 25.9 250 104-376 20-289 (310)
90 2fo7_A Synthetic consensus TPR 99.2 7.7E-10 2.6E-14 85.0 16.8 129 99-228 3-131 (136)
91 2fo7_A Synthetic consensus TPR 99.2 2E-09 7E-14 82.5 17.8 130 343-474 4-133 (136)
92 3qky_A Outer membrane assembly 99.2 1.3E-09 4.4E-14 94.7 17.8 187 95-299 13-224 (261)
93 3urz_A Uncharacterized protein 99.1 1.4E-09 4.7E-14 90.8 15.2 113 97-210 4-132 (208)
94 2pzi_A Probable serine/threoni 99.1 8.5E-10 2.9E-14 109.4 16.2 174 108-285 402-583 (681)
95 2uy1_A Cleavage stimulation fa 99.1 2.2E-07 7.4E-12 88.1 31.7 357 60-436 12-411 (493)
96 1qqe_A Vesicular transport pro 99.1 4.6E-09 1.6E-13 92.8 18.1 131 168-298 79-227 (292)
97 3dra_A Protein farnesyltransfe 99.1 1E-07 3.5E-12 83.6 25.4 125 79-206 51-186 (306)
98 3qky_A Outer membrane assembly 99.1 1E-08 3.5E-13 89.0 19.1 170 267-437 12-223 (261)
99 2uy1_A Cleavage stimulation fa 99.1 4.8E-07 1.6E-11 85.7 31.8 343 111-472 28-412 (493)
100 3urz_A Uncharacterized protein 99.1 5.6E-09 1.9E-13 87.1 16.6 181 131-334 4-186 (208)
101 3dra_A Protein farnesyltransfe 99.1 1.4E-07 4.8E-12 82.7 25.7 223 109-334 45-287 (306)
102 2pzi_A Probable serine/threoni 99.0 5E-09 1.7E-13 103.9 17.5 173 246-424 402-583 (681)
103 2r5s_A Uncharacterized protein 99.0 2.2E-09 7.5E-14 87.0 12.2 161 100-262 9-171 (176)
104 3qou_A Protein YBBN; thioredox 99.0 6E-09 2.1E-13 91.7 16.0 166 95-262 115-282 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.6E-08 5.6E-13 85.4 18.0 186 96-300 3-214 (225)
106 4ga2_A E3 SUMO-protein ligase 99.0 1.9E-09 6.5E-14 84.6 11.0 143 314-459 6-149 (150)
107 4ga2_A E3 SUMO-protein ligase 99.0 8.3E-10 2.8E-14 86.7 8.4 108 110-218 10-117 (150)
108 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.3E-08 1.5E-12 82.8 19.7 190 270-477 4-217 (225)
109 2vsy_A XCC0866; transferase, g 99.0 7.6E-09 2.6E-13 100.8 16.8 150 78-230 6-158 (568)
110 2vsy_A XCC0866; transferase, g 99.0 1.9E-08 6.4E-13 98.0 18.9 154 283-439 2-158 (568)
111 3qou_A Protein YBBN; thioredox 99.0 1.9E-08 6.5E-13 88.5 17.2 168 128-297 114-282 (287)
112 2r5s_A Uncharacterized protein 99.0 6.6E-09 2.3E-13 84.1 12.9 157 277-436 13-171 (176)
113 3rjv_A Putative SEL1 repeat pr 99.0 8.8E-08 3E-12 80.0 19.6 106 219-334 5-118 (212)
114 3rjv_A Putative SEL1 repeat pr 99.0 2.4E-07 8.3E-12 77.3 22.2 173 254-438 5-197 (212)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 2.2E-08 7.5E-13 89.1 16.6 164 179-368 4-183 (307)
116 3q7a_A Farnesyltransferase alp 98.9 1.4E-06 4.7E-11 77.2 25.1 147 79-228 72-236 (349)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 2.5E-08 8.5E-13 88.8 13.5 223 213-466 4-254 (307)
118 2qfc_A PLCR protein; TPR, HTH, 98.9 5.3E-07 1.8E-11 79.6 21.9 163 98-260 76-262 (293)
119 4gco_A Protein STI-1; structur 98.9 7.8E-08 2.7E-12 72.7 14.0 110 98-208 14-123 (126)
120 3u3w_A Transcriptional activat 98.8 3E-07 1E-11 81.1 19.4 203 52-262 35-264 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3E-07 1E-11 76.8 18.3 125 274-403 10-150 (213)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-06 3.6E-11 77.6 22.7 127 275-401 80-223 (293)
123 3u3w_A Transcriptional activat 98.8 2.1E-06 7.3E-11 75.6 24.5 164 311-474 81-267 (293)
124 3q7a_A Farnesyltransferase alp 98.8 3.8E-06 1.3E-10 74.4 25.6 225 107-334 64-331 (349)
125 1a17_A Serine/threonine protei 98.8 3.2E-07 1.1E-11 73.1 17.1 130 342-473 15-146 (166)
126 1a17_A Serine/threonine protei 98.8 1.2E-07 4.1E-12 75.5 14.3 128 98-226 14-143 (166)
127 2c2l_A CHIP, carboxy terminus 98.8 7.3E-08 2.5E-12 84.4 13.9 96 132-228 5-100 (281)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.5E-07 1.2E-11 76.4 17.4 128 99-230 8-151 (213)
129 1na0_A Designed protein CTPR3; 98.8 2E-07 6.7E-12 70.1 13.8 112 97-209 9-120 (125)
130 3gyz_A Chaperone protein IPGC; 98.8 4.5E-08 1.5E-12 76.4 10.1 103 340-445 36-138 (151)
131 4gco_A Protein STI-1; structur 98.8 4.1E-07 1.4E-11 68.7 15.0 96 342-438 15-110 (126)
132 2lni_A Stress-induced-phosphop 98.8 1.5E-07 5.2E-12 71.7 12.9 116 95-211 14-129 (133)
133 2e2e_A Formate-dependent nitri 98.7 1E-07 3.5E-12 77.1 12.0 121 108-229 21-144 (177)
134 2vyi_A SGTA protein; chaperone 98.7 2E-07 6.9E-12 70.7 13.0 118 97-215 12-129 (131)
135 3gyz_A Chaperone protein IPGC; 98.7 3.1E-07 1E-11 71.6 14.1 99 305-404 36-134 (151)
136 1na0_A Designed protein CTPR3; 98.7 8.6E-07 2.9E-11 66.4 16.1 114 341-456 10-123 (125)
137 3gw4_A Uncharacterized protein 98.7 1.4E-07 4.8E-12 78.1 12.5 155 281-436 3-174 (203)
138 2c2l_A CHIP, carboxy terminus 98.7 1.2E-07 4E-12 83.1 12.5 99 95-194 2-100 (281)
139 2vgx_A Chaperone SYCD; alterna 98.7 9.1E-08 3.1E-12 74.7 10.6 110 326-438 8-118 (148)
140 2e2e_A Formate-dependent nitri 98.7 2.5E-07 8.4E-12 74.8 13.0 123 315-439 20-145 (177)
141 2vyi_A SGTA protein; chaperone 98.7 6.3E-07 2.2E-11 67.8 14.7 118 340-459 12-129 (131)
142 2vgx_A Chaperone SYCD; alterna 98.7 1E-07 3.5E-12 74.4 9.6 97 131-228 21-117 (148)
143 2lni_A Stress-induced-phosphop 98.7 6.2E-07 2.1E-11 68.2 13.9 116 341-458 17-132 (133)
144 3dss_A Geranylgeranyl transfer 98.7 1.4E-05 4.6E-10 70.6 23.9 184 287-475 91-306 (331)
145 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-06 4.4E-11 64.7 14.9 110 97-207 4-113 (118)
146 4f3v_A ESX-1 secretion system 98.7 5.4E-07 1.8E-11 77.1 14.0 187 109-299 18-237 (282)
147 4f3v_A ESX-1 secretion system 98.6 6.8E-07 2.3E-11 76.5 14.2 128 346-475 108-239 (282)
148 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.6E-11 79.2 16.2 131 304-435 146-291 (336)
149 3upv_A Heat shock protein STI1 98.6 6.2E-07 2.1E-11 67.7 11.9 97 97-194 4-100 (126)
150 1p5q_A FKBP52, FK506-binding p 98.6 6.8E-07 2.3E-11 80.4 14.2 123 96-219 146-283 (336)
151 2xcb_A PCRH, regulatory protei 98.6 4.5E-07 1.6E-11 70.2 10.8 98 340-438 18-115 (142)
152 3gw4_A Uncharacterized protein 98.6 3.4E-07 1.2E-11 75.7 10.6 95 167-261 27-133 (203)
153 3upv_A Heat shock protein STI1 98.6 2.6E-06 8.8E-11 64.2 14.5 97 341-438 5-101 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.6 4.3E-06 1.5E-10 61.8 15.2 97 341-438 5-101 (118)
155 4gcn_A Protein STI-1; structur 98.5 1.9E-06 6.6E-11 65.0 13.3 106 342-449 10-121 (127)
156 2xcb_A PCRH, regulatory protei 98.5 1.2E-06 4.1E-11 67.8 12.3 98 96-194 17-114 (142)
157 2kck_A TPR repeat; tetratricop 98.5 1.1E-06 3.7E-11 64.5 11.3 99 96-195 5-106 (112)
158 2dba_A Smooth muscle cell asso 98.5 4.4E-06 1.5E-10 64.8 14.6 114 95-209 26-142 (148)
159 3q49_B STIP1 homology and U bo 98.5 8.6E-06 2.9E-10 62.2 15.9 98 339-437 8-105 (137)
160 3dss_A Geranylgeranyl transfer 98.5 0.00022 7.6E-09 62.8 26.5 165 109-276 41-233 (331)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 1.8E-06 6.2E-11 68.6 12.2 98 96-194 10-107 (164)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 5.7E-06 1.9E-10 65.7 15.1 97 341-438 12-108 (164)
163 2fbn_A 70 kDa peptidylprolyl i 98.5 1.5E-06 5.2E-11 71.5 11.9 121 98-219 39-175 (198)
164 3q49_B STIP1 homology and U bo 98.5 1.5E-06 5E-11 66.6 11.1 99 95-194 7-105 (137)
165 4gcn_A Protein STI-1; structur 98.5 2.3E-06 7.7E-11 64.7 11.8 102 374-476 8-115 (127)
166 2kck_A TPR repeat; tetratricop 98.5 5E-06 1.7E-10 60.8 13.5 98 340-438 6-106 (112)
167 1elr_A TPR2A-domain of HOP; HO 98.4 2.4E-06 8.3E-11 64.6 11.6 111 341-453 5-121 (131)
168 2fbn_A 70 kDa peptidylprolyl i 98.4 4.6E-06 1.6E-10 68.6 14.0 139 305-464 38-176 (198)
169 1hxi_A PEX5, peroxisome target 98.4 3.2E-06 1.1E-10 63.2 10.9 95 100-195 20-114 (121)
170 1hxi_A PEX5, peroxisome target 98.4 4.2E-06 1.4E-10 62.5 11.1 94 343-437 20-113 (121)
171 4b4t_Q 26S proteasome regulato 98.4 4.6E-05 1.6E-09 71.2 20.6 164 238-401 58-243 (434)
172 2dba_A Smooth muscle cell asso 98.3 2.5E-05 8.7E-10 60.4 15.6 96 305-402 28-127 (148)
173 4b4t_Q 26S proteasome regulato 98.3 3.4E-05 1.2E-09 72.1 19.2 196 242-437 11-244 (434)
174 1elr_A TPR2A-domain of HOP; HO 98.3 7.8E-06 2.7E-10 61.7 12.2 97 98-194 5-107 (131)
175 2xev_A YBGF; tetratricopeptide 98.3 1.3E-05 4.5E-10 60.4 13.1 92 103-195 8-105 (129)
176 2xev_A YBGF; tetratricopeptide 98.2 3.8E-05 1.3E-09 57.8 14.1 93 345-438 7-105 (129)
177 3ro3_A PINS homolog, G-protein 98.2 1.1E-05 3.8E-10 63.4 11.4 134 342-475 11-160 (164)
178 1wao_1 Serine/threonine protei 98.2 5.5E-06 1.9E-10 78.3 10.8 119 348-468 14-134 (477)
179 3ro3_A PINS homolog, G-protein 98.2 9E-06 3.1E-10 64.0 10.5 130 308-437 12-157 (164)
180 1wao_1 Serine/threonine protei 98.2 2.8E-06 9.5E-11 80.3 8.6 120 104-224 13-134 (477)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 5.6E-10 74.7 13.5 122 97-219 268-404 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.2 2.4E-05 8.3E-10 71.1 14.1 139 306-465 224-362 (370)
183 3rkv_A Putative peptidylprolyl 98.2 2.4E-05 8.1E-10 61.9 12.1 66 372-438 61-126 (162)
184 1ihg_A Cyclophilin 40; ppiase 98.2 1.2E-05 4E-10 73.2 11.0 138 98-255 224-361 (370)
185 3k9i_A BH0479 protein; putativ 98.2 4.9E-06 1.7E-10 61.7 7.0 84 110-194 3-89 (117)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.5E-05 1.2E-09 72.4 14.4 131 305-436 268-413 (457)
187 3rkv_A Putative peptidylprolyl 98.1 2.4E-05 8.2E-10 61.8 11.3 97 97-194 11-125 (162)
188 1dce_A Protein (RAB geranylger 98.1 0.00014 4.7E-09 70.1 17.9 168 115-285 47-241 (567)
189 3k9i_A BH0479 protein; putativ 98.1 9.9E-06 3.4E-10 60.0 7.6 87 352-439 2-91 (117)
190 2l6j_A TPR repeat-containing p 98.1 7.1E-06 2.4E-10 60.0 6.5 96 96-192 3-104 (111)
191 2hr2_A Hypothetical protein; a 98.1 6.4E-05 2.2E-09 58.0 11.6 64 411-474 59-132 (159)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 1.6E-05 5.4E-10 71.5 9.6 114 97-228 179-292 (338)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5E-10 71.7 8.8 150 305-475 179-330 (338)
194 1dce_A Protein (RAB geranylger 98.0 0.00037 1.3E-08 67.1 18.7 170 79-252 47-243 (567)
195 2hr2_A Hypothetical protein; a 98.0 9.6E-05 3.3E-09 57.0 11.7 103 348-450 19-148 (159)
196 1klx_A Cysteine rich protein B 97.9 0.00047 1.6E-08 52.5 14.8 111 319-439 9-127 (138)
197 2kat_A Uncharacterized protein 97.9 6.9E-05 2.4E-09 55.1 9.7 79 358-437 3-81 (115)
198 3n71_A Histone lysine methyltr 97.9 8.6E-05 2.9E-09 69.8 11.8 61 376-436 353-420 (490)
199 1zu2_A Mitochondrial import re 97.8 4E-05 1.4E-09 59.0 7.1 99 352-453 14-133 (158)
200 3n71_A Histone lysine methyltr 97.8 8.5E-05 2.9E-09 69.8 10.8 124 314-437 318-463 (490)
201 1klx_A Cysteine rich protein B 97.8 0.001 3.5E-08 50.7 14.9 110 285-404 10-127 (138)
202 1na3_A Designed protein CTPR2; 97.8 0.00023 7.8E-09 49.4 10.4 82 96-178 8-89 (91)
203 2kat_A Uncharacterized protein 97.8 0.0001 3.5E-09 54.2 8.1 78 80-159 4-81 (115)
204 2l6j_A TPR repeat-containing p 97.7 0.00016 5.6E-09 52.5 8.9 61 342-402 6-66 (111)
205 1na3_A Designed protein CTPR2; 97.7 0.00047 1.6E-08 47.8 10.6 78 376-455 11-88 (91)
206 3ma5_A Tetratricopeptide repea 97.6 0.00043 1.5E-08 49.3 8.7 66 371-437 4-69 (100)
207 1zu2_A Mitochondrial import re 97.5 0.00023 7.9E-09 54.7 6.7 70 109-179 14-93 (158)
208 3ma5_A Tetratricopeptide repea 97.5 0.00073 2.5E-08 48.0 8.7 65 95-159 5-69 (100)
209 3ly7_A Transcriptional activat 97.2 0.0072 2.5E-07 53.6 14.0 141 302-448 191-347 (372)
210 2kc7_A BFR218_protein; tetratr 97.2 0.0013 4.6E-08 46.4 7.7 57 381-438 7-64 (99)
211 3ly7_A Transcriptional activat 97.1 0.034 1.2E-06 49.3 17.2 142 267-413 191-347 (372)
212 2kc7_A BFR218_protein; tetratr 97.1 0.00083 2.8E-08 47.5 5.8 58 104-161 7-65 (99)
213 3qww_A SET and MYND domain-con 97.0 0.0023 7.8E-08 59.1 9.0 86 352-437 310-410 (433)
214 3mkq_A Coatomer beta'-subunit; 96.9 0.0079 2.7E-07 61.1 13.3 126 246-403 610-736 (814)
215 1wy6_A Hypothetical protein ST 96.9 0.069 2.3E-06 39.1 14.7 68 339-406 90-157 (172)
216 3qwp_A SET and MYND domain-con 96.8 0.0064 2.2E-07 56.2 10.3 87 350-436 297-398 (429)
217 3mkq_A Coatomer beta'-subunit; 96.7 0.044 1.5E-06 55.6 16.6 152 107-295 609-761 (814)
218 3qwp_A SET and MYND domain-con 96.7 0.0094 3.2E-07 55.0 10.2 91 312-402 294-399 (429)
219 3bee_A Putative YFRE protein; 96.7 0.018 6.2E-07 39.9 9.3 67 95-161 4-73 (93)
220 3bee_A Putative YFRE protein; 96.7 0.016 5.5E-07 40.2 9.0 67 371-438 3-72 (93)
221 3qww_A SET and MYND domain-con 96.6 0.0054 1.9E-07 56.6 8.4 85 318-402 311-410 (433)
222 1pc2_A Mitochondria fission pr 96.6 0.013 4.3E-07 44.6 8.9 93 355-450 13-110 (152)
223 1pc2_A Mitochondria fission pr 96.6 0.02 6.9E-07 43.5 9.7 83 321-404 14-101 (152)
224 2v5f_A Prolyl 4-hydroxylase su 96.6 0.037 1.3E-06 39.3 10.8 67 95-161 3-76 (104)
225 3mkq_B Coatomer subunit alpha; 96.6 0.15 5.1E-06 39.8 14.6 103 104-225 12-114 (177)
226 3mkq_B Coatomer subunit alpha; 96.5 0.13 4.5E-06 40.1 14.2 100 176-295 15-114 (177)
227 3u64_A Protein TP_0956; tetrat 96.4 0.38 1.3E-05 41.0 17.2 84 217-302 180-272 (301)
228 2v5f_A Prolyl 4-hydroxylase su 96.4 0.033 1.1E-06 39.6 9.4 71 372-444 3-79 (104)
229 3u64_A Protein TP_0956; tetrat 96.3 0.055 1.9E-06 46.0 11.9 109 356-472 179-297 (301)
230 4h7y_A Dual specificity protei 95.9 0.18 6E-06 37.9 11.4 54 388-442 74-127 (161)
231 4h7y_A Dual specificity protei 95.7 0.2 7E-06 37.5 10.9 53 214-267 74-126 (161)
232 1nzn_A CGI-135 protein, fissio 95.6 0.082 2.8E-06 38.6 8.3 88 351-438 12-103 (126)
233 4ady_A RPN2, 26S proteasome re 95.5 2.4 8E-05 42.8 23.2 271 176-456 384-673 (963)
234 3lvg_A Clathrin heavy chain 1; 95.1 6.8E-05 2.3E-09 67.8 -10.8 266 130-430 53-325 (624)
235 1wy6_A Hypothetical protein ST 95.1 0.69 2.4E-05 34.0 15.1 139 142-301 18-156 (172)
236 1nzn_A CGI-135 protein, fissio 94.9 0.32 1.1E-05 35.4 9.7 68 407-475 33-105 (126)
237 3lvg_A Clathrin heavy chain 1; 94.1 0.00012 4E-09 66.3 -11.9 215 199-434 53-287 (624)
238 1v54_E Cytochrome C oxidase po 93.8 0.27 9.2E-06 33.8 6.7 62 147-208 26-87 (109)
239 2ff4_A Probable regulatory pro 93.8 0.3 1E-05 44.3 9.5 52 106-157 180-231 (388)
240 3o48_A Mitochondria fission 1 93.4 1.2 4E-05 32.7 10.1 75 369-445 35-112 (134)
241 4gns_B Protein CSD3, chitin bi 93.0 1.4 4.8E-05 43.4 13.1 53 349-401 346-398 (754)
242 1v54_E Cytochrome C oxidase po 92.9 1 3.5E-05 31.0 8.4 61 321-381 26-86 (109)
243 4fhn_B Nucleoporin NUP120; pro 92.7 10 0.00035 39.9 20.1 52 171-226 817-868 (1139)
244 2ff4_A Probable regulatory pro 92.2 0.71 2.4E-05 41.9 9.5 55 380-435 177-231 (388)
245 1y8m_A FIS1; mitochondria, unk 91.9 2.9 0.0001 31.1 11.9 73 371-445 36-111 (144)
246 4gns_B Protein CSD3, chitin bi 91.7 0.54 1.8E-05 46.3 8.5 126 101-226 252-397 (754)
247 4b4t_P 26S proteasome regulato 91.6 8.3 0.00029 35.5 19.8 253 214-467 30-318 (445)
248 4fhn_B Nucleoporin NUP120; pro 91.5 3.1 0.00011 43.8 14.6 146 311-463 818-990 (1139)
249 2y69_E Cytochrome C oxidase su 91.4 0.75 2.6E-05 33.6 6.7 60 149-208 71-130 (152)
250 2y69_E Cytochrome C oxidase su 90.3 2.3 7.9E-05 31.1 8.4 62 321-382 69-130 (152)
251 4ady_A RPN2, 26S proteasome re 90.0 18 0.00061 36.7 28.7 268 139-419 382-671 (963)
252 2wpv_A GET4, UPF0363 protein Y 88.8 11 0.00037 32.6 19.7 111 99-223 35-157 (312)
253 3lpz_A GET4 (YOR164C homolog); 88.5 12 0.00041 32.7 20.7 69 98-180 36-108 (336)
254 3ffl_A Anaphase-promoting comp 87.8 5.8 0.0002 30.4 9.6 57 312-368 27-91 (167)
255 1zbp_A Hypothetical protein VP 86.6 5.1 0.00017 33.6 9.4 117 348-474 5-130 (273)
256 1qsa_A Protein (soluble lytic 86.3 25 0.00085 34.0 26.4 116 319-437 228-347 (618)
257 4b4t_P 26S proteasome regulato 84.8 24 0.00082 32.5 21.8 254 179-434 29-320 (445)
258 1zbp_A Hypothetical protein VP 83.9 8 0.00027 32.4 9.4 56 105-160 5-60 (273)
259 3o48_A Mitochondria fission 1 83.8 11 0.00037 27.7 10.0 27 376-402 80-106 (134)
260 3txn_A 26S proteasome regulato 83.8 24 0.00083 31.7 20.3 92 205-296 104-207 (394)
261 3lpz_A GET4 (YOR164C homolog); 82.9 23 0.0008 30.9 21.5 81 303-401 134-214 (336)
262 1y8m_A FIS1; mitochondria, unk 81.5 14 0.00049 27.4 10.9 68 337-404 36-107 (144)
263 3ffl_A Anaphase-promoting comp 81.4 16 0.00055 28.0 11.6 67 335-401 13-90 (167)
264 4b4t_R RPN7, 26S proteasome re 81.4 14 0.00047 33.9 11.1 96 307-402 133-236 (429)
265 4b4t_R RPN7, 26S proteasome re 81.0 18 0.00061 33.2 11.8 62 133-194 133-196 (429)
266 3esl_A Checkpoint serine/threo 80.7 19 0.00064 28.7 10.0 54 111-164 93-148 (202)
267 1wdy_A 2-5A-dependent ribonucl 79.4 14 0.00047 31.1 10.1 18 104-121 9-26 (285)
268 4a1g_A Mitotic checkpoint seri 72.2 29 0.00099 26.2 9.8 72 92-166 63-136 (152)
269 1qsa_A Protein (soluble lytic 71.1 77 0.0026 30.6 34.2 114 250-367 229-346 (618)
270 1wdy_A 2-5A-dependent ribonucl 71.0 22 0.00076 29.7 9.2 51 136-190 7-60 (285)
271 2uwj_G Type III export protein 70.9 23 0.00077 24.4 7.4 84 75-169 20-105 (115)
272 3txn_A 26S proteasome regulato 70.7 60 0.0021 29.2 22.7 25 202-226 21-45 (394)
273 2p58_C Putative type III secre 70.3 23 0.0008 24.3 8.6 84 75-169 21-106 (116)
274 3eiq_C Programmed cell death p 68.5 63 0.0022 28.6 14.4 75 377-452 220-296 (358)
275 2qx5_A Nucleoporin NIC96; mRNA 66.2 1E+02 0.0034 30.0 15.8 80 241-331 300-382 (661)
276 2wvi_A Mitotic checkpoint seri 65.8 43 0.0015 25.6 10.1 73 92-167 58-132 (164)
277 3kea_A K1L; tropism, ANK repea 61.6 54 0.0019 27.7 9.7 18 278-295 166-183 (285)
278 3kae_A CDC27, possible protein 60.3 56 0.0019 25.2 8.8 36 440-475 202-239 (242)
279 2wpv_A GET4, UPF0363 protein Y 59.7 86 0.0029 27.1 23.2 27 372-398 132-158 (312)
280 1bpo_A Protein (clathrin); cla 58.3 56 0.0019 29.9 9.0 111 75-190 343-453 (494)
281 3ltm_A Alpha-REP4; protein eng 56.6 72 0.0025 25.2 18.8 138 304-456 63-200 (211)
282 2uwj_G Type III export protein 54.2 50 0.0017 22.7 7.3 47 142-194 50-96 (115)
283 3eiq_C Programmed cell death p 54.2 1.2E+02 0.004 26.9 12.2 24 274-297 221-244 (358)
284 2d2s_A Exocyst complex compone 53.1 92 0.0031 25.5 9.0 89 346-437 24-119 (235)
285 2p58_C Putative type III secre 53.0 53 0.0018 22.6 8.4 54 141-200 50-103 (116)
286 1s1e_A KV channel interacting 52.8 89 0.003 25.1 11.6 44 114-157 89-134 (224)
287 2d2s_A Exocyst complex compone 52.7 95 0.0033 25.4 10.0 90 311-402 24-119 (235)
288 2nsz_A Programmed cell death p 51.1 42 0.0014 24.4 6.1 24 170-193 11-34 (129)
289 1k1a_A B-cell lymphoma 3-encod 50.8 81 0.0028 25.4 8.8 19 212-230 18-36 (241)
290 1k1a_A B-cell lymphoma 3-encod 50.8 95 0.0033 24.9 9.7 21 106-126 15-35 (241)
291 2keb_A DNA polymerase subunit 49.7 59 0.002 22.2 5.8 59 46-104 27-89 (101)
292 3hra_A Ankyrin repeat family p 48.7 27 0.00093 27.4 5.3 14 108-121 13-26 (201)
293 2jul_A Calsenilin; EF-hand, ca 48.6 1.1E+02 0.0039 25.1 9.9 26 236-261 230-255 (256)
294 4b4t_S RPN3, 26S proteasome re 48.0 1.5E+02 0.0052 27.7 10.4 64 132-195 232-299 (523)
295 3jxi_A Vanilloid receptor-rela 47.1 14 0.00047 30.8 3.4 55 138-192 9-72 (260)
296 2zu6_B Programmed cell death p 47.0 1.4E+02 0.0048 25.7 13.0 68 377-445 169-238 (307)
297 2ion_A PDCD4, programmed cell 46.9 39 0.0013 25.5 5.4 25 100-124 12-36 (152)
298 3hra_A Ankyrin repeat family p 46.6 99 0.0034 23.9 8.5 15 325-339 158-172 (201)
299 2ion_A PDCD4, programmed cell 46.6 91 0.0031 23.5 8.1 25 308-332 12-36 (152)
300 1s6c_A KV4 potassium channel-i 45.6 98 0.0034 23.6 12.1 24 201-224 157-180 (183)
301 3bu8_A Telomeric repeat-bindin 45.0 1.2E+02 0.0041 24.4 8.2 24 380-403 120-143 (235)
302 3kea_A K1L; tropism, ANK repea 44.6 98 0.0033 26.0 8.5 143 208-367 36-185 (285)
303 3bu8_A Telomeric repeat-bindin 44.4 1.2E+02 0.004 24.4 7.7 47 114-160 89-143 (235)
304 4aez_C MAD3, mitotic spindle c 44.1 1.3E+02 0.0043 24.4 13.0 47 148-194 131-178 (223)
305 4a1g_A Mitotic checkpoint seri 44.0 1E+02 0.0034 23.2 10.4 50 289-338 84-134 (152)
306 3eyy_A Putative iron uptake re 43.9 96 0.0033 23.0 7.5 33 113-145 33-66 (145)
307 4ets_A Ferric uptake regulatio 43.5 67 0.0023 24.5 6.4 42 104-145 39-83 (162)
308 2xig_A Ferric uptake regulatio 41.8 1.1E+02 0.0037 22.9 8.1 60 399-459 17-76 (150)
309 3ltj_A Alpharep-4; protein eng 40.7 1.3E+02 0.0043 23.4 18.6 138 304-456 58-195 (201)
310 2nsz_A Programmed cell death p 40.5 1E+02 0.0035 22.3 9.4 22 345-366 12-33 (129)
311 2rfa_A Transient receptor pote 40.2 1.4E+02 0.0047 23.8 9.4 17 175-191 43-59 (232)
312 2fe3_A Peroxide operon regulat 40.2 1E+02 0.0036 22.8 7.0 60 399-459 12-71 (145)
313 3eu9_A Huntingtin-interacting 38.8 59 0.002 26.1 6.1 8 245-252 49-56 (240)
314 3ygs_P Procaspase 9; apoptosis 38.1 73 0.0025 21.7 5.3 63 119-186 26-88 (97)
315 1ug3_A EIF4GI, eukaryotic prot 37.7 1.5E+02 0.0051 25.9 8.6 25 203-227 14-38 (339)
316 3eu9_A Huntingtin-interacting 37.6 58 0.002 26.2 5.8 14 351-364 218-231 (240)
317 4aez_C MAD3, mitotic spindle c 37.4 1.4E+02 0.0047 24.2 7.4 73 92-167 112-186 (223)
318 1bd8_A P19INK4D CDK4/6 inhibit 37.3 75 0.0026 23.3 6.0 15 142-156 10-24 (156)
319 1mzb_A Ferric uptake regulatio 37.1 1.1E+02 0.0036 22.4 6.5 58 400-458 9-67 (136)
320 2o03_A Probable zinc uptake re 36.3 60 0.0021 23.6 5.0 36 109-144 22-58 (131)
321 2keb_A DNA polymerase subunit 36.3 97 0.0033 21.1 5.3 57 392-450 27-88 (101)
322 3mwm_A ZUR, putative metal upt 35.2 58 0.002 24.0 4.8 42 104-145 20-62 (139)
323 2jul_A Calsenilin; EF-hand, ca 34.9 1.9E+02 0.0064 23.7 9.1 166 60-226 73-255 (256)
324 4fke_A Aminopeptidase N; zinc 34.8 3.8E+02 0.013 27.3 16.7 90 310-403 691-787 (909)
325 2f6m_A Suppressor protein STP2 34.7 71 0.0024 19.9 4.1 42 102-143 7-48 (65)
326 4gq2_M Nucleoporin NUP120; bet 34.6 2.1E+02 0.0073 29.3 10.3 108 346-458 816-950 (950)
327 2b7e_A PRE-mRNA processing pro 34.5 51 0.0017 20.1 3.4 30 216-245 2-31 (59)
328 1n11_A Ankyrin; clathrin, BAND 34.3 2.5E+02 0.0085 25.2 10.1 333 103-470 50-399 (437)
329 2fu4_A Ferric uptake regulatio 34.3 93 0.0032 20.0 7.0 60 399-459 7-67 (83)
330 4g8k_A 2-5A-dependent ribonucl 34.2 2E+02 0.0067 24.7 9.0 37 222-258 221-259 (337)
331 1mzb_A Ferric uptake regulatio 33.9 81 0.0028 23.0 5.4 34 112-145 33-67 (136)
332 3aji_A 26S proteasome non-ATPa 33.6 1.4E+02 0.0048 23.7 7.5 18 105-122 11-28 (231)
333 3ctd_A Putative ATPase, AAA fa 32.6 1.9E+02 0.0065 23.1 8.5 35 212-246 47-81 (213)
334 3eyy_A Putative iron uptake re 32.3 1E+02 0.0035 22.8 5.8 59 399-459 9-67 (145)
335 2w57_A Ferric uptake regulatio 32.2 1.2E+02 0.0041 22.6 6.2 59 400-459 8-67 (150)
336 4gq2_M Nucleoporin NUP120; bet 31.7 4.4E+02 0.015 27.0 12.9 88 380-473 816-926 (950)
337 3f3f_C Nucleoporin NUP85; stru 31.4 1.9E+02 0.0064 27.4 8.3 49 169-218 519-567 (570)
338 1bpo_A Protein (clathrin); cla 30.5 3.2E+02 0.011 25.1 11.9 109 145-257 343-451 (494)
339 2cos_A Serine/threonine protei 30.3 56 0.0019 19.3 3.0 36 430-470 11-48 (54)
340 1gp8_A Protein (scaffolding pr 30.1 70 0.0024 17.3 3.3 26 447-472 13-38 (40)
341 4fke_A Aminopeptidase N; zinc 29.8 4.6E+02 0.016 26.7 16.8 50 142-194 737-786 (909)
342 3ltm_A Alpha-REP4; protein eng 29.4 2E+02 0.0069 22.4 18.7 137 269-420 63-199 (211)
343 3esl_A Checkpoint serine/threo 29.4 2.1E+02 0.0073 22.7 13.9 52 356-407 95-148 (202)
344 3b7b_A Euchromatic histone-lys 29.4 2.1E+02 0.0072 22.7 8.0 13 423-435 221-233 (237)
345 2etb_A Transient receptor pote 29.2 1.3E+02 0.0046 24.4 6.8 54 138-192 6-69 (256)
346 2r9g_A AAA ATPase, central reg 28.9 2.2E+02 0.0074 22.6 9.0 16 353-368 27-42 (204)
347 3ezq_A Tumor necrosis factor r 28.8 1.6E+02 0.0054 20.9 8.9 85 35-124 8-93 (115)
348 4g8k_A 2-5A-dependent ribonucl 28.7 2.8E+02 0.0094 23.7 12.1 20 103-122 28-47 (337)
349 3pvs_A Replication-associated 28.0 3.5E+02 0.012 24.7 13.2 37 318-354 268-304 (447)
350 3pvs_A Replication-associated 27.9 3.5E+02 0.012 24.7 13.5 54 248-301 268-326 (447)
351 2ijq_A Hypothetical protein; s 27.6 2E+02 0.0069 21.8 8.5 60 99-159 35-103 (161)
352 4b4t_S RPN3, 26S proteasome re 27.6 3.9E+02 0.013 25.1 11.3 64 166-229 231-299 (523)
353 3jxi_A Vanilloid receptor-rela 27.1 57 0.0019 26.8 4.0 25 210-234 12-36 (260)
354 2fe3_A Peroxide operon regulat 27.1 1.9E+02 0.0065 21.3 7.2 17 145-161 35-51 (145)
355 3bge_A Predicted ATPase; struc 26.8 2.4E+02 0.0081 22.3 7.4 20 388-407 21-40 (201)
356 4ets_A Ferric uptake regulatio 26.7 1.7E+02 0.0057 22.2 6.2 44 415-458 38-83 (162)
357 2p1h_A APAF-1, apoptotic prote 26.6 1.5E+02 0.005 19.8 6.8 57 118-181 26-82 (94)
358 2xig_A Ferric uptake regulatio 26.3 2E+02 0.0069 21.3 7.6 47 135-181 30-76 (150)
359 2w57_A Ferric uptake regulatio 25.8 90 0.0031 23.3 4.5 32 113-144 33-65 (150)
360 3v31_A Ankyrin repeat family A 25.7 2E+02 0.0069 21.2 8.4 14 108-121 11-24 (167)
361 3mwm_A ZUR, putative metal upt 25.6 1E+02 0.0036 22.6 4.7 43 416-458 20-62 (139)
362 2o03_A Probable zinc uptake re 25.5 1.2E+02 0.004 22.0 4.9 42 382-423 18-59 (131)
363 3f3f_C Nucleoporin NUP85; stru 25.2 2.4E+02 0.0081 26.7 7.8 73 180-254 495-568 (570)
364 3mv2_A Coatomer subunit alpha; 24.6 3.4E+02 0.012 23.4 11.7 52 389-440 185-238 (325)
365 3ljn_A Hypothetical protein; a 23.9 86 0.0029 27.5 4.8 18 452-469 249-266 (364)
366 3b7b_A Euchromatic histone-lys 23.2 2.8E+02 0.0096 21.9 7.9 13 353-365 220-232 (237)
367 2fu4_A Ferric uptake regulatio 23.1 1.5E+02 0.0053 18.9 6.8 11 54-64 8-18 (83)
368 2crb_A Nuclear receptor bindin 22.6 1.7E+02 0.0059 19.7 4.6 41 410-450 16-61 (97)
369 2rfa_A Transient receptor pote 22.4 2.7E+02 0.0092 22.0 7.3 50 174-224 8-58 (232)
370 1s6c_A KV4 potassium channel-i 22.3 2.5E+02 0.0087 21.1 10.1 131 59-191 34-181 (183)
371 2ijq_A Hypothetical protein; s 21.9 2.6E+02 0.0091 21.2 8.2 15 388-402 46-60 (161)
372 2zu6_B Programmed cell death p 21.9 3.8E+02 0.013 23.0 12.7 24 100-123 6-29 (307)
373 3ph0_C ASCG; type III secretio 21.4 1.4E+02 0.0049 17.9 4.6 41 75-117 20-60 (61)
374 3ctd_A Putative ATPase, AAA fa 21.4 3.2E+02 0.011 21.9 8.5 32 388-419 49-80 (213)
375 3e3v_A Regulatory protein RECX 21.2 2.9E+02 0.0098 21.3 10.4 51 287-338 50-100 (177)
376 3ljn_A Hypothetical protein; a 21.0 3.8E+02 0.013 23.1 8.5 16 384-399 251-266 (364)
377 2r9g_A AAA ATPase, central reg 20.8 3.2E+02 0.011 21.7 10.1 37 317-354 26-62 (204)
378 3bqo_A Telomeric repeat-bindin 20.5 1.9E+02 0.0064 22.9 5.2 22 173-194 124-145 (211)
379 3rjo_A Endoplasmic reticulum a 20.5 4.7E+02 0.016 23.5 18.1 157 272-437 199-368 (419)
380 1bd8_A P19INK4D CDK4/6 inhibit 20.3 1.2E+02 0.004 22.2 4.3 19 104-122 6-24 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-36 Score=297.90 Aligned_cols=408 Identities=10% Similarity=0.057 Sum_probs=337.9
Q ss_pred CCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------
Q 011652 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--------- 127 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------- 127 (480)
..|++..+..+...+...++ .|+.+|+.+... ++++.+++.++..|.+.|++++|.++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 34566666666666666655 677777766433 3577788888888888888888888887432221
Q ss_pred -------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHH----------------------------
Q 011652 128 -------MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL---------------------------- 172 (480)
Q Consensus 128 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------- 172 (480)
+.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+...+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 1246778888888888888888888888887754 3333333333
Q ss_pred ----------HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 173 ----------LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 173 ----------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
+..|.+.|++++|.++|+++... +++..+|+.++..+.+.|++++|.++|+++.+.+.. +..++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 346 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence 34455667788888888877664 578899999999999999999999999999977543 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998654 6678899999999999999999999999998753 336889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
+|..+|+++.+.+. .+..++..++.+|.+.|++++|.++|+.+.+..+.+..+|..++..|.+.|++++|.++|+++.+
T Consensus 425 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998743 37889999999999999999999999999997788999999999999999999999999999987
Q ss_pred C----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 403 K----RFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 403 ~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.++++.
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 5 55677 7899999999999999999999999999875 457899999999999999999999999999988764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=293.38 Aligned_cols=405 Identities=10% Similarity=-0.038 Sum_probs=353.8
Q ss_pred CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011652 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
++...+..++..+.+.++ .|+.+|+.+... .|+..++..++..|.+.|++++|..+|+.+... +.+..++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 355667788888887776 899999988743 257889999999999999999999999987533 36889999999
Q ss_pred HHHHHhCCHHHHHHHHHHHH-hc--------------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 139 RKYARVQKVEEAVYTFNVMQ-KY--------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~-~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
.+|.+.|++++|+++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|+++.+..+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999998532 21 2344688999999999999999999999999987544455444
Q ss_pred HHH--------------------------------------HHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 204 SIL--------------------------------------LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 204 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
..+ +..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 433 56677889999999999999875 57899999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011652 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998875 5578889999999999999999999999998653 457889999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
.+|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|..++.+|.+.|++++|.++|+++.+...
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999987532 26779999999999999999999999999997788999999999999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 406 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.++.+
T Consensus 473 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 473 -YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999876 66788 78999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.8e-29 Score=233.80 Aligned_cols=372 Identities=12% Similarity=0.075 Sum_probs=309.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
+.|.+.++.+.+..+ .+...+..+...+...|++++|...++......+.+..+|..+...+.+.|++++|++.|+++
T Consensus 16 ~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 16 EAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 378888887766543 567778888888889999999999999988888888889999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
.+.. |.+..+|..+..++...|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+... .+..+
T Consensus 94 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 171 (388)
T 1w3b_A 94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVA 171 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHH
Confidence 8764 556678888999999999999999999998876666777888888899999999999999999887642 25678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|..+...+...|++++|...++++...+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+...|.+
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHH
Confidence 8888899999999999999999988865 4567788888899999999999999999887653 2357788888899999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
.|++++|...++++.+.+.. +..++..+...+.+.|++++|...++++.+..+.+..++..+...+...|++++|.+.+
T Consensus 250 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999886433 56678888889999999999999999998888888999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 329 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 329 RKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 9988764 3367888899999999999999999999998743 224556666666665554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-28 Score=229.42 Aligned_cols=367 Identities=12% Similarity=0.058 Sum_probs=327.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
+...+.+.|++++|.+.++.+.+..|.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34567889999999999999999888888899999999999999999999999998865 67889999999999999999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
++|...|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999998866777889999999999999999999999999986422 45567778889999999999999999998
Q ss_pred hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh
Q 011652 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 342 (480)
... +.+..+|..+..++...|++++|...|+++.+.+. .+...+..+...+...|++++|...+.+..+..+. +..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 864 55678899999999999999999999999988643 36788999999999999999999999999886432 5778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+..++...|++++|...++++.+..+.++.+|..+..++.+.|++++|.+.++++.+.. +.+..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 89999999999999999999999999778889999999999999999999999999998864 45889999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.++.+.
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998753 446788999999999999999999999999887643
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-30 Score=246.38 Aligned_cols=202 Identities=17% Similarity=0.249 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC---------HHH
Q 011652 219 AREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR---------IED 288 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~ 288 (480)
+..+.+++.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444444444332 223555566666666666666666666666666666666666666654433 344
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred -cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 369 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
++.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555555555555555544444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.1e-30 Score=244.18 Aligned_cols=205 Identities=17% Similarity=0.240 Sum_probs=181.6
Q ss_pred hhHHHHHHHhhc-CCCCC-hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------H
Q 011652 183 RKAQEIFDCMKD-RFIPD-SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR---------V 251 (480)
Q Consensus 183 ~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 251 (480)
..+..+...+.+ ...+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345556666655 33333 346889999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 011652 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 332 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 387 (480)
.+.|+.||..||+.++.+|++.|+.++|.+++++|.+ +..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 8999999999999999864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.2e-24 Score=206.87 Aligned_cols=361 Identities=10% Similarity=0.027 Sum_probs=293.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+.+.|++++|..+|+.+....+.+..++..+...+...|++++|+..|+.+.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5778899999999999999999999999998888889999999999999999999999999999876 567889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCCh---hhHHHHH------------HHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDS---KTYSILL------------EGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
+|...|++++|...|+++....+.+. ..+..++ ..+...|++++|...|+++.+... .+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHH
Confidence 99999999999999999988666666 6666664 448889999999999999987643 3678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL-------- 311 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 311 (480)
.+..+|...|++++|.+.++++.... +.+..++..+..+|...|++++|...|+++.+... .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764 55788899999999999999999999999986532 244455444
Q ss_pred ----HHHHHHcCCHhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 312 ----IGAFCKANKFKNVYRVLKDMNSKGVAPN-----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 312 ----i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
...+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++.+.+..+.+..+|..+..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999999885 344 3467888899999999999999999999877888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----ChHHHHHHHHHH-HHcC--CCC
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING------------LCDKG-----IVSDSCVLLEDM-IEKG--IRP 442 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~-~~~~--~~p 442 (480)
+|...|++++|...++++.+.... +...+..+..+ |...| +.+++.+.++++ .... ..|
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999886522 55666666533 33334 566778888763 3321 112
Q ss_pred CH-------HHHHHHHHHHHhcCCHHH
Q 011652 443 SG-------ETFGKLRKLLIKEGREDV 462 (480)
Q Consensus 443 ~~-------~~~~~l~~~~~~~g~~~~ 462 (480)
+. ..+..+..+|...|+.+.
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22 245555566655555443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.5e-25 Score=211.45 Aligned_cols=398 Identities=11% Similarity=0.033 Sum_probs=308.4
Q ss_pred HHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH
Q 011652 70 LEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147 (480)
Q Consensus 70 l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 147 (480)
-..+...++ .|+..|+.+.... |++.+|..+...+.+.|++++|.+.++++.+.++.+..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 334444444 8999998887664 58889999999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHH-----------------------------------HHh
Q 011652 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-----------------------------------DCM 192 (480)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-----------------------------------~~~ 192 (480)
++|...|+.+.+.+ +++......++..+........+.+.+ ..+
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999988876 344444444443333222111111111 001
Q ss_pred hc-C---------CCCChhhHHHHHHHhhc---CCChhHHHHHHHHHHH-----cCCCC--------ChhhHHHHHHHHH
Q 011652 193 KD-R---------FIPDSKTYSILLEGWGK---DPNLPRAREIFREMVD-----TGCNP--------DIVTYGIMVDVLC 246 (480)
Q Consensus 193 ~~-~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~--------~~~~~~~l~~~~~ 246 (480)
.. . .+.+...+......+.. .|++++|...|+++.+ ....| +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00 0 01124444455554444 8999999999999887 31122 3456778888999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011652 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 326 (480)
..|++++|...++++...... ...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999887533 78888899999999999999999999987643 366788889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 327 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
.++++.+.... +...+..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...++++......
T Consensus 326 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 326 DFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99999887443 56788888899999999999999999999877778889999999999999999999999988764311
Q ss_pred -CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 407 -PS----MHTFSVLINGLCD---KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 407 -p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..++.+.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 11 3488889999999 999999999999998764 346778888999999999999999999999887654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.5e-24 Score=200.54 Aligned_cols=328 Identities=9% Similarity=0.044 Sum_probs=269.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC
Q 011652 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (480)
+...+.......+.+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444555555666778889999999999999999999999998864 667899999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 011652 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIM------------VDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------~~~~~~~g~~~~a~~~~~ 259 (480)
.+.+..++..++.++.+.|++++|.+.|+++.+.. |+. ..+..+ ...+...|++++|...++
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67789999999999999999999999999999753 443 455544 445889999999999999
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 339 (480)
++.... +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+...|...|++++|...++++.+.... +
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 998864 5678889999999999999999999999998753 347889999999999999999999999999875322 3
Q ss_pred hhhHHHH------------HHHHHhCCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 340 SRTCNII------------LNGLIGRGETDEAYRVFRRMIKLCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 340 ~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
...+..+ ...+...|++++|...++.+.+..+.+ ...+..+..++.+.|++++|...++++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444 788899999999999999999855555 447889999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
. +.+...|..+..+|...|++++|...++++.+.. +-+...+..+.
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4 2378999999999999999999999999999753 22455555555
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-23 Score=202.57 Aligned_cols=375 Identities=10% Similarity=-0.012 Sum_probs=294.2
Q ss_pred CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011652 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
|++..+..+...+...++ .|.+.|+.+.+..+ .+..+|..+..++.+.|++++|...|+.+...++.+......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 577777777777766555 89999998876644 57899999999999999999999999999988875555555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHhc-----------------------------------CC---------CCCHHHHHHHHH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKY-----------------------------------GV---------TQNLAAFNGLLS 174 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~-----------------------------------~~---------~~~~~~~~~ll~ 174 (480)
..+........+.+.+..+... .. +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5544433333333222111100 00 112444444444
Q ss_pred HHHc---cCChhhHHHHHHHhhc-----C--C-------CCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 175 ALCK---SKNVRKAQEIFDCMKD-----R--F-------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 175 ~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
.+.. .|++++|...|+++.. . . +.+..++..+...+...|++++|...++++.+.... ...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 4444 8999999999999876 2 1 334567888999999999999999999999886533 788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|...++++.+.... +...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHH
Confidence 8889999999999999999999998865 556778899999999999999999999999886433 56788888999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh---cC
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD------ADTYTMMIKMFCQ---GG 388 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g 388 (480)
.|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..+.+ ...+..+..++.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999876332 56788889999999999999999999998732322 4489999999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
++++|...++++..... .+..++..+...|.+.|++++|...|+++.+.. |+..
T Consensus 430 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTME 483 (514)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHH
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccH
Confidence 99999999999987653 367888999999999999999999999999854 4543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=8.8e-23 Score=198.47 Aligned_cols=398 Identities=11% Similarity=0.095 Sum_probs=296.4
Q ss_pred HHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011652 65 IVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142 (480)
Q Consensus 65 ~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 142 (480)
.+...-..+...++ .|+..|+.+....+ .++.+|..+...+.+.|++++|.+.|+++...++.+..++..+...+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 33344444444454 78999988876654 578889999999999999999999999998888888889999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC-------CCChh--------------
Q 011652 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-------IPDSK-------------- 201 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------------- 201 (480)
..|++++|+..|+.+.. .|+.. ...+..+...+....|...++.+.... .|+..
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999964322 22221 122333444455566777776664421 11111
Q ss_pred ----------------hHHHHHHHhhcC--------CChhHHHHHHHHHHHcCCCCC--------hhhHHHHHHHHHhcC
Q 011652 202 ----------------TYSILLEGWGKD--------PNLPRAREIFREMVDTGCNPD--------IVTYGIMVDVLCKAG 249 (480)
Q Consensus 202 ----------------~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g 249 (480)
....+...+... |++++|..+++++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 222222222222 37888999999988653 33 224666777888899
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
++++|...++...... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998864 557888889999999999999999999988764 3367888999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR----- 404 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 404 (480)
++.+.... +...+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|.+.++++.+..
T Consensus 335 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 99886433 567888899999999999999999999998778888899999999999999999999999887542
Q ss_pred CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 405 FIPSMHTFSVLINGLCDK----------GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.......+......+... |++++|...|+++.+.. +.+...+..+..++.+.|++++|.+.+++..++.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111223345556677777 99999999999998764 3467788899999999999999999999998876
Q ss_pred CC
Q 011652 475 KE 476 (480)
Q Consensus 475 ~~ 476 (480)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 54
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=5.5e-21 Score=175.55 Aligned_cols=332 Identities=10% Similarity=0.013 Sum_probs=210.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..+..+...+.+.|++++|...|+.+....+.+..++..+...+...|++++|+..++.+.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456777888888889999999999999888888788888889999999999999999998888764 4567788888888
Q ss_pred HHccCChhhHHHHHHHhhcCCC---CChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFI---PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+...|++++|...|++.....+ .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 8889999999999988877555 45555554421100 001122233444555555
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 3344445555555555555555555555554432 2244455555555555555555555555555
Q ss_pred hCCCCCChhhHH------------HHHHHHHhCCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHH
Q 011652 333 SKGVAPNSRTCN------------IILNGLIGRGETDEAYRVFRRMIKLCEADAD----TYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 333 ~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~ 396 (480)
+.... +...+. .+...+...|++++|...++.+.+..+.+.. .+..+..++...|++++|...
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 43211 111111 2245566777777777777777764444442 344566777777888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 77777653 2266777777777777888888888888777643 2234455555555443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.3e-21 Score=185.87 Aligned_cols=366 Identities=12% Similarity=0.052 Sum_probs=278.8
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
++..+..+...+...++ .|++.|+.+....+ .++.++..+...+...|++++|...|+.+ ...+ ......+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVL-SLNG---DFDGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C--------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCC---CCChHHHH
Confidence 45556555555555444 89999999876654 58899999999999999999999999743 3333 11222344
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC------CCCCHH------------------------------HHHHHHHHHHcc----
Q 011652 140 KYARVQKVEEAVYTFNVMQKYG------VTQNLA------------------------------AFNGLLSALCKS---- 179 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~~---- 179 (480)
.+...+....|...++.+.... ..|+.. ....+...+...
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 5555666678888888775431 112221 222222222222
Q ss_pred ----CChhhHHHHHHHhhcCCCCChh-------hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011652 180 ----KNVRKAQEIFDCMKDRFIPDSK-------TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 180 ----~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
|++++|..+++++....+.+.. ++..+...+...|++++|...+++..+. .|+...+..+...+...
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh
Confidence 4788999999999886555543 4677778888999999999999999986 45678888999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 011652 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
|++++|.+.++++.... +.+..++..+..++...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 290 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998865 55678899999999999999999999999987643 35678888999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhc----------CCHHH
Q 011652 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC------EADADTYTMMIKMFCQG----------GELEK 392 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~----------g~~~~ 392 (480)
+++.+.... +...+..+...+...|++++|...++.+.+.. ......+..+...+... |++++
T Consensus 368 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 368 NETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 999886432 56788899999999999999999999988721 12223345556777777 99999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
|...++++.+... .+...+..+...|.+.|++++|...|+++.+..
T Consensus 447 A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 447 AIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999988653 367889999999999999999999999999764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.3e-20 Score=173.03 Aligned_cols=316 Identities=10% Similarity=0.027 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
+..+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777777777777777777777654 455667777777777777777777777777665455666677777777
Q ss_pred hcCCChhHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNP----DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (480)
...|++++|...+++..+. .| +...+..+...+ . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777776654 23 111121111110 0 11233446788899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998764 34788899999999999999999999999998743 36788999999999999999999999999
Q ss_pred HhcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHH
Q 011652 367 IKLCEADADTYTMM------------IKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 367 ~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.+..+.+...+..+ ...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 98777777665433 67789999999999999999876522 33 335567889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 431 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.++++.+.. +.+...+..+..++.+.|++++|.+.+++..++.+.
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999864 347888999999999999999999999999988754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.4e-20 Score=168.20 Aligned_cols=286 Identities=10% Similarity=0.013 Sum_probs=166.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3445556666666667777777777777766666555566666666667777777777777666653 445566666666
Q ss_pred HHHccC-ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 175 ALCKSK-NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 175 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.+...| ++++|...|++.....+.+...|..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666666554555566666666666666666666666666554321 23444445555555555555
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
|.+.+++..... +.+. ..+..+...+...|++++|...++++.+
T Consensus 178 A~~~~~~al~~~-~~~~-----------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 178 AERFFSQALSIA-PEDP-----------------------------------FVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHTTC-TTCH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCh-----------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 555555555442 2333 4444444444445555555554444433
Q ss_pred CC--------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 334 KG--------VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 334 ~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
.. .+.....+..+..++...|++++|...++++.+..+.+...+..+..+|...|++++|.+.++++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 21 0222345556666666666666666666666655555566666666666666666666666666655432
Q ss_pred CCCHHHHHHHHHHH
Q 011652 406 IPSMHTFSVLINGL 419 (480)
Q Consensus 406 ~p~~~~~~~l~~~~ 419 (480)
.+...+..+..++
T Consensus 302 -~~~~~~~~l~~~~ 314 (330)
T 3hym_B 302 -DDTFSVTMLGHCI 314 (330)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHH
Confidence 2455555555555
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=7e-20 Score=166.14 Aligned_cols=293 Identities=9% Similarity=-0.004 Sum_probs=233.5
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
+.+...+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+... .+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 445556666777777778888888888887776666777777777888888888888888888876532 2566777778
Q ss_pred HHHHhcC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 243 DVLCKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 243 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
..+...| ++++|.+.+++..... +.+...+..+..++...|++++|...++++.+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888887764 445677888888888999999999999888775432 456677788899999999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHH
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC---------EADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +....++..+..+|...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987433 67788999999999999999999999998732 4556899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL-IKEGRED 461 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 461 (480)
|...++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999987653 367889999999999999999999999998754 33667777888877 4566644
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=8.2e-17 Score=154.21 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----hCCHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR----VQKVEEA 150 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 150 (480)
.|...|+.+.+. + ++..+..+...|.. .+++++|.++|++....+ ++..+..+...|.. .+++++|
T Consensus 61 ~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 61 QAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp HHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 444444444332 1 34444444444444 445555555555544433 33444444444444 4455555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc----CCChhHHHHH
Q 011652 151 VYTFNVMQKYGVTQNLAAFNGLLSALCK----SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK----DPNLPRAREI 222 (480)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 222 (480)
+.+|+...+.| +...+..+..+|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|.++
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 55555544433 33344444444443 44455555555544432 134444444444444 4455555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHH
Q 011652 223 FREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFL 294 (480)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 294 (480)
|++..+.| +...+..+...|.. .+++++|..++++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 55544432 33344444444443 445555555555444432 22333333333433 445555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHH
Q 011652 295 EMEKNGILADVAMYNALIGAFCKA-----NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG---ETDEAYRVFRRM 366 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 366 (480)
+..+.| +...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.++|++.
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 544432 233444444444443 45555555555544432 2233333444443333 444455555444
Q ss_pred HhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHc
Q 011652 367 IKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 438 (480)
.+. .++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.
T Consensus 358 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 358 AAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 442 334444444444444 445555555555544433 33444444444444 44555555555555443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.2e-17 Score=161.76 Aligned_cols=405 Identities=10% Similarity=0.069 Sum_probs=293.2
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
+......++.. ...++ .|..+|+.+....+ .+...|..++..+.+.|+++.|..+|+++....| +...|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 55666666664 33333 89999999876643 6889999999999999999999999999988765 7778887775
Q ss_pred HH-HHhCCHHHHHH----HHHHHHhc-CCC-CCHHHHHHHHHHHHc---------cCChhhHHHHHHHhhcCCCCC--hh
Q 011652 140 KY-ARVQKVEEAVY----TFNVMQKY-GVT-QNLAAFNGLLSALCK---------SKNVRKAQEIFDCMKDRFIPD--SK 201 (480)
Q Consensus 140 ~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~--~~ 201 (480)
.. ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++... .|.+ ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 43 35677777665 77766543 443 356778887776654 6889999999999887 2222 23
Q ss_pred hHHHHHHHhh-------------cCCChhHHHHHHHHHH------HcC---CCCC--------hhhHHHHHHHHHhc---
Q 011652 202 TYSILLEGWG-------------KDPNLPRAREIFREMV------DTG---CNPD--------IVTYGIMVDVLCKA--- 248 (480)
Q Consensus 202 ~~~~l~~~~~-------------~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~--- 248 (480)
.|........ +.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 3443333221 2345666776666532 111 2333 13444444332221
Q ss_pred -CCH----HHHHHHHHHhhhCCCCccHHHHHHHHHHhhc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHH
Q 011652 249 -GRV----DEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-------ENRIE-------DAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 249 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
++. .++..+|++..... +.+...|...+..+.. .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47778888887763 5567788888887775 79987 8999999998632344688899
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHh
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPN-S-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM-FCQ 386 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 386 (480)
.++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|.++|++..+..+.+...|...+.. +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999986 443 2 4788888888899999999999999998555555555443333 346
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcCCHHHH
Q 011652 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI-RPS--GETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a 463 (480)
.|++++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988764 23688999999999999999999999999998642 332 45788888888889999999
Q ss_pred HHHHHHHHhhhC
Q 011652 464 KFLQEKMNLLVK 475 (480)
Q Consensus 464 ~~~~~~~~~l~~ 475 (480)
..+.+++.+.-+
T Consensus 483 ~~~~~r~~~~~p 494 (530)
T 2ooe_A 483 LKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHCc
Confidence 999998877543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.5e-19 Score=166.62 Aligned_cols=289 Identities=11% Similarity=0.033 Sum_probs=195.8
Q ss_pred cCChhhHHH-HHHHhhcCCCC----ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 179 SKNVRKAQE-IFDCMKDRFIP----DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 179 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.|++++|.. .+++.....+. +...+..+...+.+.|++++|...|+++.+... .+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 55544331111 234455666666666666666666666665432 245555666666666666666
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH---------------HHHHHHHHc
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN---------------ALIGAFCKA 318 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~li~~~~~~ 318 (480)
|...++++.... +.+..++..+..++...|++++|...++++.+.... +...+. ..+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666665543 345556666666666666666666666666554321 111111 023333488
Q ss_pred CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+.+..++..+...+...|++++|...+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999988763321 46788888899999999999999999998877788899999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP----------SGETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
+++.+... .+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..++
T Consensus 275 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 99887642 367888999999999999999999999988643211 2678889999999999999999887
Q ss_pred HHHH
Q 011652 468 EKMN 471 (480)
Q Consensus 468 ~~~~ 471 (480)
++..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 6543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=9.2e-20 Score=168.14 Aligned_cols=263 Identities=11% Similarity=-0.010 Sum_probs=171.4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011652 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
+..+...+...|++++|...|+++....+.+..++..+..++...|++++|...|+++.+... .+..++..+...+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 334444444444444444444444443334444444444444444444444444444443321 1334444444444444
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHH----------------HHHHHHhhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 011652 249 GRVDEALGIVKSMDSTVCRPTSFIY----------------SVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNAL 311 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 311 (480)
|++++|.+.++++..... .+...+ ..+... ...|++++|...++++.+..... +..++..+
T Consensus 146 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 444444444444444321 111111 122233 37788899999998887653221 47788888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
...|.+.|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..+..+|.+.|+++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999998887632 256788888899999999999999999998877788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 392 KAFKVWKYMKLKRFIP----------SMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
+|...++++....... ...+|..+..+|...|++++|..++++.
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999887643111 2678999999999999999999887644
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=4.6e-16 Score=148.98 Aligned_cols=365 Identities=11% Similarity=0.043 Sum_probs=308.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----hCCHHHHH
Q 011652 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR----VQKVEEAV 151 (480)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 151 (480)
++..++..... .++..+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445444332 377888888888887 899999999999998875 67889999999998 89999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc----CCChhHHHHHH
Q 011652 152 YTFNVMQKYGVTQNLAAFNGLLSALCK----SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK----DPNLPRAREIF 223 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 223 (480)
++|++..+.| +...+..|...|.. .+++++|...|++.... -+...+..+...|.. .+++++|.+.|
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999998865 66777788888887 78999999999998763 267788888888877 88999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHHH
Q 011652 224 REMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLE 295 (480)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 295 (480)
++..+.| +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999864 67788888888887 899999999999998865 55667777777775 8899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHH
Q 011652 296 MEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR-----GETDEAYRVFRRM 366 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 366 (480)
..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|..++++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98764 56677778888887 899999999999998864 455777788888877 8999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 011652 367 IKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 439 (480)
.+. .+...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 323 ~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 323 AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 873 45678888888888866 7899999999999875 77889999999988 899999999999999876
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhC
Q 011652 440 IRPSGETFGKLRKLLIK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 440 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
++..+..+...|.+ .++.++|.+++++..+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 57778888888988 8999999999999988763
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1e-19 Score=167.61 Aligned_cols=269 Identities=10% Similarity=0.009 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (480)
+...+..+...+.+.|++++|..+|+++.+... .+..++..+..++...|++++|+..++++.... +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577777777777888888888877776542 256677777777777888888888887777654 445677777777
Q ss_pred HhhccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHH
Q 011652 279 TYGVENRIEDAVDTFLEMEKNGIL---------ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILN 348 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 348 (480)
+|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 788888888888888777653210 01223444577888889999999999999886432 15678888999
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
.+...|++++|...++++.+..+.+..+|..+..+|...|++++|...++++.+... .+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999988788899999999999999999999999999987642 3588899999999999999999
Q ss_pred HHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 429 CVLLEDMIEKGIR-----------PSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 429 ~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...|+++.+.... .+...|..+..++...|+.+.+.++.++-
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999864211 13567889999999999999998887653
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.2e-19 Score=167.18 Aligned_cols=265 Identities=9% Similarity=-0.042 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (480)
..+..+...+.+.|++++|...|+++....+.+..+|..+...+...|++++|...|+++.+... .+..++..+..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 33555555666666666666666666554455566666666666666666666666666665432 24556666666666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcc----------HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 011652 247 KAGRVDEALGIVKSMDSTVCRPT----------SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAF 315 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 315 (480)
..|++++|...++++.+.. +.+ ...+..+...+...|++++|...++++.+.... .+..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666665532 111 222334577888888899999999888775322 1577888888899
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
...|++++|...++++.+.... +..++..+..++...|++++|...++++.+..+.+..++..+..+|...|++++|..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998876332 577888899999999999999999999988777889999999999999999999999
Q ss_pred HHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 396 VWKYMKLKRFI-----------PSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 396 ~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
.++++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99988764211 1357889999999999999888877664
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=5.3e-18 Score=153.45 Aligned_cols=278 Identities=11% Similarity=0.020 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+......+...|++++|..+|+++....+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34556667777888888888888888887777777888888888888888888888888887764 55677777788888
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM-VD-VLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a 254 (480)
...|++++|...++++....+.+...+..+.... |+......+ .. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 8888888888888887765444444444431100 000001111 11 24444555555
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555554442 2344555555555555555555555555555432 224555566666666666666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA------------DADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
.. .+...+..+...+...|++++|.+.++++.+..+. +..+|..+..++...|++++|..++++.
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 13455666666666666666666666666653232 4566677777777777777777766543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=7.2e-18 Score=152.58 Aligned_cols=280 Identities=10% Similarity=-0.015 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+..+...+...|++++|..+|+.+.+.. +.+..++..+..++...|++++|...++++....+.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445566677777777777777777777654 446667777777777777777777777777665555666777777777
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHH-HH-HhhccCCHHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL-VH-TYGVENRIED 288 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~ 288 (480)
...|++++|.+.++++.+.... +...+..+... .|+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777654321 12222111100 0111111122 22 3788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987643 3788899999999999999999999999988643 2577889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-----------SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
..+.+..++..+..+|...|++++|.+.++++....... +...|..+..++.+.|++++|..++++..
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 778889999999999999999999999999988754221 46789999999999999999999987654
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=9.7e-19 Score=158.02 Aligned_cols=290 Identities=10% Similarity=0.098 Sum_probs=134.4
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011652 65 IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144 (480)
Q Consensus 65 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 144 (480)
.+..+|..+.. -+.|.++++.+ +++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...
T Consensus 8 a~~~ll~~~~~-ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIEHIGN-LDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccC-HHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence 34444544432 23788898877 24469999999999999999999999653 4677899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 011652 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
|++++|+..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|+.++..|...|.+++|..+|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988877774 4567889999999999999999887774 4677899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC
Q 011652 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304 (480)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (480)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 76 47999999999999999999999988 27889999999999999999996554432 234
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCC------CHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEA------DADT 376 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~------~~~~ 376 (480)
+.-...++..|.+.|.+++|..+++...... +-....|+-+...|++- ++++..+.++...+ +.+| +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4456678899999999999999999988764 33566777776666653 45555544444433 2222 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~ 397 (480)
|..+...|...++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 889999999999999887743
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3.4e-15 Score=144.49 Aligned_cols=373 Identities=9% Similarity=0.022 Sum_probs=270.7
Q ss_pred CCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-C--C
Q 011652 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESL-AKIRQYQIMWD----LVNAMRTK-R--M 128 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~--~ 128 (480)
.+-++......+......+. .|..+|+.+.... |++..|...+... ...|+++.|.+ +|+..... | +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc
Confidence 34466666666666655554 8999999987664 5788888888644 45678877765 77766542 3 3
Q ss_pred CCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HccCChhhHH
Q 011652 129 LNVETFCIIMRKYAR---------VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-------------CKSKNVRKAQ 186 (480)
Q Consensus 129 ~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~ 186 (480)
.+...|...+....+ .|+++.|..+|++..+....+....|....... .+.+++..|.
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 577888888887665 789999999999998831111123444332211 1345577777
Q ss_pred HHHHHh------hcC----CCCC--------hhhHHHHHHHhhcC----CCh----hHHHHHHHHHHHcCCCCChhhHHH
Q 011652 187 EIFDCM------KDR----FIPD--------SKTYSILLEGWGKD----PNL----PRAREIFREMVDTGCNPDIVTYGI 240 (480)
Q Consensus 187 ~~~~~~------~~~----~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ 240 (480)
.++... .+. .+|+ ...|...+...... ++. ..+..+|++.+... +-+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 777652 221 2443 24555555443322 233 37788999988753 336778888
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC--
Q 011652 241 MVDVLCK-------AGRVD-------EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-- 304 (480)
Q Consensus 241 l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 304 (480)
++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 8887775 78987 89999999987333556888999999999999999999999999985 343
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
...|...+..+.+.|+.++|..+|++..+.... +...+...... +...|+.++|..+|+...+..+.++..|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 357888888888999999999999999986322 22233322222 3468999999999999998777889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 384 FCQGGELEKAFKVWKYMKLKRF-IP--SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998642 23 2458888888888899999999999998864
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=9.3e-17 Score=142.04 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
..++..+...+...|+.++|++.++++...+. +.+...+..+..++...|++++|++.+++ +.+...+..++.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 33344444444444444444444444443322 12233333344444444444444444443 234445555555
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTC---NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
.+.+.|++++|...++++.+.. |+.... ...+..+...|++++|..+|+++.+..+.++..++.+..++.+.|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555442 222111 11222233346666666666666665566666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 011652 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD-SCVLLEDMIEK 438 (480)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 438 (480)
++|...++++...... +..++..++..+...|+.++ +.++++++.+.
T Consensus 217 ~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6666666666654422 55566666666666666654 45666666653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=4.7e-17 Score=143.97 Aligned_cols=252 Identities=10% Similarity=0.080 Sum_probs=165.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCh
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNL--AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (480)
+.....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3445566777777766655432 2222 3444556677777777766654433 2355666677777777777777
Q ss_pred hHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 217 PRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++|++.++++...+..|+ ...+..+..++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776654443 44445555677777777777777765 34566677777777777777777777777
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 011652 296 MEKNGILADVAMY---NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 296 ~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..|.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 76653 332211 112233334477888888888887762 336667777778888888888888888888777777
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 011652 373 DADTYTMMIKMFCQGGELEK-AFKVWKYMKLKR 404 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 404 (480)
++.++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 78888888888888887765 567777777654
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-15 Score=145.94 Aligned_cols=365 Identities=9% Similarity=-0.032 Sum_probs=245.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY----- 160 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 160 (480)
.....||.+...+...|++++|++.|++..+. .+....+|..+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45678999999999999999999999886532 2345678999999999999999999999877542
Q ss_pred C--CCCCHHHHHHHHHHHHc--cCChhhHHHHHHHhhcCCCCChhhHHHHHHH---hhcCCChhHHHHHHHHHHHcCCCC
Q 011652 161 G--VTQNLAAFNGLLSALCK--SKNVRKAQEIFDCMKDRFIPDSKTYSILLEG---WGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 161 ~--~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 233 (480)
+ ......++..+..++.. .+++++|...|++..+..|.++..+..+..+ +...++.++|++.+++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 1 11234566655555544 4568999999999887656677777666555 34567888899999988875422
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011652 234 DIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 234 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+... .+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHH
Confidence 45555555544443 467889999999887764 56677888899999999999999999999887532 3566666
Q ss_pred HHHHHHHHc-------------------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 011652 310 ALIGAFCKA-------------------NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 310 ~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
.+...|... +..+.|...+++..+.... +...+..+...+...|++++|+..|+++.+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555332 2356777777777765332 56678888889999999999999999988743
Q ss_pred CCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 011652 371 EADAD---TYTMMIK-MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446 (480)
Q Consensus 371 ~~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 446 (480)
+++.. .+..+.. .+...|++++|...+++..+.. |+...... ....+.+++++.+... +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHH
Confidence 33222 2233332 2346789999999999888754 44322221 2234455666666544 446778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+..+..++...|++++|.+.+++..+++.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999988764
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5e-18 Score=153.43 Aligned_cols=284 Identities=12% Similarity=0.103 Sum_probs=139.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHH
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 187 (480)
-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+.
T Consensus 14 ~~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 36788999999999983 346999999999999999999999965 3577789999999999999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 011652 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 77776664 5567889999999999999999998884 377789999999999999999999999977
Q ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 36999999999999999999999998 278999999999999999999966554422 2444456788
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-KRFIP------SMHTFSVLINGLC 420 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p------~~~~~~~l~~~~~ 420 (480)
..|.+.|.+++|..+++......+.....|+.+.-.|++- ++++..+-++.... .+++| +...|..+.-.|.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986678888999998888875 34444444433322 23333 4567999999999
Q ss_pred hcCChHHHHHH
Q 011652 421 DKGIVSDSCVL 431 (480)
Q Consensus 421 ~~g~~~~A~~~ 431 (480)
+.++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 99999988773
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=6.1e-15 Score=148.68 Aligned_cols=354 Identities=15% Similarity=0.132 Sum_probs=242.8
Q ss_pred CCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011652 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
-..+|+.+....+.+...+. +|+++++.+...+. |..+....+.++....+. +..+..++.++..... ..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 45677777777777765555 78888877763332 445566666666666665 4455555555543111 23
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
-+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCC
Confidence 36677778888888888888752 12222333332 5678888888888664 57888888888888899
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
+++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 98888888664 266778888888888899999888888877654 33333445888888888887544332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHH
Q 011652 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 375 (480)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHH
Confidence 2 245566777888888888888888888874 37888888888888888888888876 4567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|..+..++.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 88888888888888888877655432 355677788888888888888888887776433 223334544554444
Q ss_pred h--cCCHHHHHHHH
Q 011652 456 K--EGREDVLKFLQ 467 (480)
Q Consensus 456 ~--~g~~~~a~~~~ 467 (480)
+ -++.-++.+++
T Consensus 1326 Ky~peklmEhlk~f 1339 (1630)
T 1xi4_A 1326 KFKPQKMREHLELF 1339 (1630)
T ss_pred hCCHHHHHHHHHHH
Confidence 4 33344444433
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.3e-15 Score=141.74 Aligned_cols=361 Identities=13% Similarity=0.036 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhhCcH--HHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--
Q 011652 64 EIVEDVLEKFRNAGT--LAFCFFKWAEKQ-------QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-----R-- 127 (480)
Q Consensus 64 ~~~~~~l~~~~~~~~--~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-- 127 (480)
..++.+-..+...|+ .|++.|+.+.+. ...+....+|+.+..+|...|++++|...+++.... +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 344433333334443 788888766421 122346788999999999999999999999887542 1
Q ss_pred -CCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHccCChhhHHHHHHHhhcCCCCChh
Q 011652 128 -MLNVETFCIIMRKYARV--QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA---LCKSKNVRKAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 128 -~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (480)
+....++.....++... +++++|++.|++..+.. |.++..+..+..+ +...++.++|.+.+++..+..+.+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 23567777777676665 46999999999998865 4456666665555 34567888899999888776566777
Q ss_pred hHHHHHHHhh----cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 011652 202 TYSILLEGWG----KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277 (480)
Q Consensus 202 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (480)
++..+...+. ..+++++|.+++++...... .+...+..+...|...|++++|...+++..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 7776665544 45678999999999887643 367788899999999999999999999998864 44566666666
Q ss_pred HHhhcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 278 HTYGVE-------------------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 278 ~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
.+|... +.++.|...+++..+... .+..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555322 235677788887766432 245567788899999999999999999998875443
Q ss_pred Chh--hHHHHHH-HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 339 NSR--TCNIILN-GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
... .+..+.. .....|+.++|+..+++..+..+.+.... +....+.++++.....+ +.+..+|..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~-p~~~~~~~~L 436 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKN-GADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 221 1222222 24578999999999999887444443221 12334555666655544 2367899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
...|...|++++|++.|+++++.+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999764
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=165.13 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=101.1
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMV---DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (480)
-..+|+++|++|++.|++++|.++|++|. ..|+.||..|||+||++|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776654 346777777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC------hhhHHHHHH
Q 011652 276 LVHTYGVENR-IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN------SRTCNIILN 348 (480)
Q Consensus 276 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~ 348 (480)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 7777777776 366777777777777777777777777554443 233333333 2233333 344455555
Q ss_pred HHHhCC
Q 011652 349 GLIGRG 354 (480)
Q Consensus 349 ~~~~~~ 354 (480)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555444
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=3e-13 Score=136.68 Aligned_cols=317 Identities=12% Similarity=0.094 Sum_probs=252.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
...+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..+..++...
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 3447788889999999999999863 12222333332 788999999998865 3478899999999999
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|++++|.+.|.+.. +...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKAd-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CCHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 99999999997753 88889999999999999999999999888754 33333445888999999988644443
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 339 (480)
+ .++...+..+...|...|++++|...|... ..|..+...|.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 456667778999999999999999999985 379999999999999999999998873 5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++.....+ +-....|..+...|
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 689999999999999999999877643 3677888899999999999999999998887655 23556777777777
Q ss_pred Hhc--CChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 011652 420 CDK--GIVSDSCVLLEDMIEKGIRP------SGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 420 ~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
++. ++..++.++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1325 aKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 764 45555666655332 2222 46679999999999999998874
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=6e-18 Score=165.07 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.||+++|.+|++.|++++|.++|+.|.+ +..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555554432 455555566666666666666666666666665556666666666666
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 417 NGLCDKGIV-SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 417 ~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.++|+.|+. ++|.++|++|.+.|+.||..+|++++....+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 665555553 4555566666655666666555555544433
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=5.8e-16 Score=130.89 Aligned_cols=200 Identities=10% Similarity=0.014 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
++++..+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35777888888899999999999999999999888889999999999999999999999999998875 56778888888
Q ss_pred HHHHcc-----------CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 174 SALCKS-----------KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 174 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
.++... |++++|...+++..+..|.+...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 888888888888877656677788888888888888888888888887766 5677777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
.++...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888877654 4456677777777888888888877776654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.1e-15 Score=130.20 Aligned_cols=226 Identities=9% Similarity=0.044 Sum_probs=171.9
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cc----HHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR--PT----SFIY 273 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~ 273 (480)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.+++....... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888888899999999998888776 67788888888888889999988888887764211 11 5677
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+..++...|++++|...+++..+. .|+. ..+.+.|++++|...++.+...... +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 78888888888888888888888764 3443 3455667788888888887775322 445677777778888
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
|++++|...++++.+..+.+..++..+..+|...|++++|...++++.+... .+...|..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888876677778888888888888888888888888776542 256777778888888888888888888
Q ss_pred HHHHc
Q 011652 434 DMIEK 438 (480)
Q Consensus 434 ~~~~~ 438 (480)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-15 Score=131.01 Aligned_cols=224 Identities=10% Similarity=0.025 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC--CC----hhhHHH
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN--PD----IVTYGI 240 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 240 (480)
..+..+...+...|++++|...|++..... .+..++..+..++...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 344445555555555555555555554432 44555555555555555555555555555432111 11 244445
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
+...+...|++++|...+++.... .|+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555555555555555555543 2222 22333445555555555554431 1123344444555555555
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
+++|...++++.+.... +...+..+..++...|++++|...++.+.+..+.+...|..+..++...|++++|...++++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555543221 34445555555555555555555555555544445555555555555555555555555554
Q ss_pred Hh
Q 011652 401 KL 402 (480)
Q Consensus 401 ~~ 402 (480)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.8e-15 Score=125.83 Aligned_cols=208 Identities=13% Similarity=0.024 Sum_probs=108.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34444445555555555555555555554443 33444444555555555555555555555444321 13334444444
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
.+...+. .. +. .....|++++|...+++..+..|.+...+..+..++...|++++|
T Consensus 82 ~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 82 AYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 4443300 00 00 000116777777777777666666667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...|+++.+.+ .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777776655 466677777777777777777777777776643 234555666666777777777777666654
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=2.8e-14 Score=130.44 Aligned_cols=248 Identities=8% Similarity=0.039 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
+..+|+.+...+.+.|++++|+..++++...++.+..+|..+...+...|+ +++|+..|+++.+.. +.+..+|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356788888999999999999999999999999899999999999999997 999999999999876 567889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-AGRVDE 253 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 253 (480)
++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999877889999999999999999999999999999987543 67888888888888 566577
Q ss_pred H-----HHHHHHhhhCCCCccHHHHHHHHHHhhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------
Q 011652 254 A-----LGIVKSMDSTVCRPTSFIYSVLVHTYGVEN--RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN------- 319 (480)
Q Consensus 254 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 319 (480)
| +..+++..... +-+...|..+..++...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 47788777764 456778888888888877 578888888887 33 3446777888888887764
Q ss_pred --CHhHHHHHHHHH-HhCCCCCC-hhhHHHHHHHH
Q 011652 320 --KFKNVYRVLKDM-NSKGVAPN-SRTCNIILNGL 350 (480)
Q Consensus 320 --~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 350 (480)
..++|..+++++ .+. .|. ...|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247888888887 554 333 33444444433
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.6e-14 Score=136.19 Aligned_cols=368 Identities=10% Similarity=0.001 Sum_probs=246.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-----CHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY---QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-----KVEE 149 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 149 (480)
..|.+.|+.+... + ++..+..+...+...|+. ++|..+|++.... ++..+..+...+...+ ++++
T Consensus 20 ~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 20 VTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 3899999887655 2 445556666677777877 8999999988755 5666777777555554 7889
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh---HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK---AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
|+.+|++..+.|. ++ .+..|...|...+..+. +.+.+..... ..+...+..+...|...+.++++......+
T Consensus 93 A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 93 AESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998773 33 56667777776655444 4444444433 125667778888888888666666554444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHC
Q 011652 227 VDTGCNPDIVTYGIMVDVLCKAG---RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKN 299 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~ 299 (480)
.+.-...+...+..+...|...| +.++|++.|++....| +++...+..+...|... +++++|...|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 33222334458888888999999 9999999999999887 56666656777777655 79999999999988 3
Q ss_pred CCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-----ChHHHHHHHHHHHhcCC
Q 011652 300 GILADVAMYNALIGA-F--CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-----ETDEAYRVFRRMIKLCE 371 (480)
Q Consensus 300 ~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 371 (480)
| +...+..+... + ...++.++|...|++..+.| +...+..+...|. .| +.++|.++|++.. +
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence 3 55566666666 3 46899999999999999876 5566777777776 45 9999999999887 6
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 011652 372 ADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
.++..+..|...|.. ..++++|...|++..+.|. ......+...|.. ..+..+|..+|+...+.|. ++
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~ 391 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PE 391 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HH
Confidence 788888888888877 3499999999999998773 3456666666664 4689999999999998873 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.......+......++.++|.++.++..+.
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 332222233233345677888888877654
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=2.8e-14 Score=125.31 Aligned_cols=249 Identities=10% Similarity=0.008 Sum_probs=182.2
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc--HHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT--SFIYSVL 276 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 276 (480)
|...+......+...|++++|...|++..+.... +...+..+..++...|++++|++.+++.......++ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3456667788888899999999999998876432 455788888889999999999999998887431121 3347888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
..++...|++++|...+++..+... .+..++..+...|...|++++|...+++..+.... +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 8888889999999999988877532 25677888888888899999999888888776322 455566666244445688
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCChH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKR-FIPS------MHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~ 426 (480)
++|...++.+.+..+.+...+..+..++...|+ +++|...++++.+.. ..|+ ...|..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 889888888888777778888888888888887 777888888776541 1123 256777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 427 DSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 427 ~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+|...++++.+.. +.+......+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 8888888888754 22444444443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=1.9e-14 Score=126.35 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhh----HHHHHHHhhc
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT----YSILLEGWGK 212 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~ 212 (480)
....+...|++++|+..|+...+.. +.+..++..+..++...|++++|...+++... .+++... |..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332 22233344444444444444444444444443 1112111 4444444444
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHH
Q 011652 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (480)
.|++++|...|++..+.... +...+..+...|...|++++|.+.+++..... +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443211 33444444445555555555555555444431 22333333333122222345555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHH
Q 011652 293 FLEMEKNGILADVAMYNALIGAFCKANK---FKNVYRVLKDMN 332 (480)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 332 (480)
|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55444331 1123344444444444444 444444444433
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=3.8e-14 Score=122.89 Aligned_cols=200 Identities=11% Similarity=-0.032 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
+..|..+...+...|++++|.+.|+++....+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677777888888888888888888887777777888888888888888888888888887764 45677777778888
Q ss_pred HccCChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
...|++++|...++++.. ..+.+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776 4444566677777777777777777777777766532 2455666667777777777777
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777766543 344555666666666667777777776666554
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=2.8e-15 Score=131.87 Aligned_cols=246 Identities=9% Similarity=-0.049 Sum_probs=148.1
Q ss_pred hcCChhHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011652 109 KIRQYQIMWDLVNAMRTKRM----LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (480)
..|++++|+..|+.+....+ .+..++..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777766532 245566677777777777777777777776654 4456677777777777777777
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
|...|++.....+.+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777776655556677777777777777777777777777664 344444444444555567777777777666554
Q ss_pred CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh
Q 011652 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341 (480)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 341 (480)
. +++...+ .++..+...++.++|...+....+..... +...+..+...|...|++++|...+++..+.. |+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 2 2333333 35555566666667777766665431110 13455666666666777777777777666542 221
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222233444555555555443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=5.1e-14 Score=119.62 Aligned_cols=201 Identities=9% Similarity=-0.028 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..|..+...+...|++++|.+.|+.+....+.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666667777777777777777777766666566677777777777777777777777766653 4455666666666
Q ss_pred HHcc-CChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 176 LCKS-KNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 677777776666665 2233345566666666666666666666666655421 13455555555566666666
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
+|...++.+.......+...+..+...+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666555443113444444555555555555555555555543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=8.8e-15 Score=126.10 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
..+..|..+...+...|++++|...|+++....+.+..++..+...+...|++++|+..++.+.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4566777777888888888888888888888777778888888888888888888888888887764 456777777888
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
++...|++++|...++++....+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887775566777777777888888888888888887776532 2556666677777777777777
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777766653 344556666666777777777777777766654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=7.5e-13 Score=116.23 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=145.3
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYS 274 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (480)
+..++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|.+.+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666666666666652 234455556666666 666666666666666554 455566
Q ss_pred HHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 275 VLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 275 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 677777777777666653 55666666666666 677777777777766654 34455556
Q ss_pred HHHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 347 LNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 347 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
...+.. .+++++|...+++..+. .+...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 666665 67777777777776653 345666667777777 777777777777777664 35566667777
Q ss_pred HHh----cCChHHHHHHHHHHHHcC
Q 011652 419 LCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 419 ~~~----~g~~~~A~~~~~~~~~~~ 439 (480)
|.. .+++++|...|++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 776 777777777777777654
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=9.7e-13 Score=115.52 Aligned_cols=225 Identities=11% Similarity=-0.020 Sum_probs=198.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5567778888999999999999999999884 356678888899999 999999999999999875 788888
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 310 ALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 310 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+. .+...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--NDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence 99999999 999999999999999874 67788888999998 99999999999999883 2677888899
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 382 KMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 382 ~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
..|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 99998 999999999999999875 66788889999999 999999999999999865 36778888889
Q ss_pred HHh----cCCHHHHHHHHHHHHhhhC
Q 011652 454 LIK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 454 ~~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
+.. .|++++|.+.+++..+++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 998 9999999999999988764
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.5e-13 Score=119.08 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
..+...+...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...|...
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 333334444444444444444443332 2233344444444444455555555554444332 12344555555555555
Q ss_pred CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666655555555422222 23445555555666666666666666666544555666666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 199 DLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66655432 34555666666666666666666666666654
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.8e-14 Score=126.67 Aligned_cols=248 Identities=8% Similarity=-0.078 Sum_probs=151.1
Q ss_pred hcCCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCN---PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
...|++++|+..++++.+.... .+...+..+...+...|++++|...++++.... +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456666677776666654211 134455666666667777777777777666653 345666666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
+|...++++.+... .+..++..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777665422 24566666777777777777777777777664 3333333444444455677777777777666
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP---SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
...+++...+. ++..+...++.++|...+++........ +...+..+...|.+.|++++|...|+++.+.. |+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 65555544444 5555666667777777777765542110 14667777777888888888888888877643 322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566667777766654
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=6.4e-14 Score=128.05 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+|..+...+...|++++|++.++++++.. +.+..+|+.+..++...|+ +++|+..|++.....+.+...|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35567777778888888888888888888765 5567778888888888886 888888888887766677788888888
Q ss_pred HhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc-cCCHH
Q 011652 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-ENRIE 287 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 287 (480)
++...|++++|+..|+++++.... +...|..+..++...|++++|+..++++.... +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888775433 56677777777777777777777777777664 4456666666666666 44445
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC------
Q 011652 288 DA-----VDTFLEMEKNGILADVAMYNALIGAFCKAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG------ 354 (480)
Q Consensus 288 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------ 354 (480)
+| +..+++..+... .+...|..+...+...| ++++|...+.++ +. ...+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 55 355555554321 24455555555555555 455565555555 22 1123344455555554442
Q ss_pred ---ChHHHHHHHHHH-HhcCCCCHHHHHHHHHHH
Q 011652 355 ---ETDEAYRVFRRM-IKLCEADADTYTMMIKMF 384 (480)
Q Consensus 355 ---~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~ 384 (480)
..++|.++++++ .+..+.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 135555555555 343334444444444433
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=2.1e-13 Score=115.79 Aligned_cols=203 Identities=8% Similarity=-0.030 Sum_probs=140.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+...+..+...+...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34566667777777888888888887777653 4456677777777777788888888777776643 235666777777
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 314 AFCKA-NKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 314 ~~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+..+.+...+..+..++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 77777 777777777777776322232 4556666777777777777777777777765666777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777766542135566666666667777777777777776653
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=8.6e-14 Score=131.22 Aligned_cols=346 Identities=10% Similarity=0.012 Sum_probs=231.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV---EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+...+.+.|++++|.++|++..+.+ +..++..+...|...|+. ++|+.+|++..+. ++..+..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 5667788999999999999998776 344566677777778887 9999999998864 555666666655555
Q ss_pred C-----ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011652 180 K-----NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP---RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251 (480)
Q Consensus 180 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 251 (480)
+ ++++|...|++..... +...+..|...|...+..+ ++.+.+......| +......+...|...+.+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 5 7889999999988733 3447778888887665543 4555555555544 455677777888887755
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHhHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN---RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA----NKFKNV 324 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a 324 (480)
+++......+.+.-...++..+..+...|...| +.++|+..|++..+.|.. +...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 554444333322211223337888888898899 999999999999988743 566556677777554 699999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH-H--HhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNG-L--IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG-----ELEKAFKV 396 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 396 (480)
...|++.. . -+...+..+... + ...++.++|.++|++..+. .++..+..|...|. .| ++++|.+.
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 99999988 3 245566666665 4 5689999999999998873 37788888888887 45 99999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011652 397 WKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK----EGREDVLKFLQE 468 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 468 (480)
|++.. .| +...+..+...|.. ..+.++|..+|++..+.|. ......+...|.. ..+.++|..+++
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99988 43 77788888877776 3489999999999998763 3334455555553 347888988888
Q ss_pred HHHhhh
Q 011652 469 KMNLLV 474 (480)
Q Consensus 469 ~~~~l~ 474 (480)
+..+.+
T Consensus 383 ~A~~~g 388 (452)
T 3e4b_A 383 LAKAQD 388 (452)
T ss_dssp HHHTTC
T ss_pred HHHHCC
Confidence 776543
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=3.4e-14 Score=122.36 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=42.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
..+...+...|++++|...|+++....+.+...+..+...+...|++++|...+++..+... .+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhc
Confidence 33333344444444444444444433333344444444444444444444444444433211 12333333334444444
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 106 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp CHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444433322 222333333333333344444444443333
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=6.8e-12 Score=122.34 Aligned_cols=420 Identities=10% Similarity=0.075 Sum_probs=283.3
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 011652 49 VLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ---YQIMWDLVNAM 123 (480)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 123 (480)
.+...+... +.+......++..+...+. .+..+|+.+.... +.+...|...+..-.+.++ ++.+.++|++.
T Consensus 54 ~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 445555553 4577788888887766544 6888998887664 3688889888888888888 99999999998
Q ss_pred HhCCC--CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHh-cCC-CC-CHHHHHHHHHHHHc---------cCC
Q 011652 124 RTKRM--LNVETFCIIMRKYARVQKV--------EEAVYTFNVMQK-YGV-TQ-NLAAFNGLLSALCK---------SKN 181 (480)
Q Consensus 124 ~~~~~--~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~~ 181 (480)
....+ ++...|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 88774 7888888888776665543 334577776654 355 44 45678877765542 334
Q ss_pred hhhHHHHHHHhhcCCCCC--hhhHHHHHHHhhcCCC-------------hhHHHHHHHHHHH--cCCC---CC-------
Q 011652 182 VRKAQEIFDCMKDRFIPD--SKTYSILLEGWGKDPN-------------LPRAREIFREMVD--TGCN---PD------- 234 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~--~~~~---~~------- 234 (480)
++.+..+|++... .|.. ..+|......-...+. ++.|...+.++.. .++. |.
T Consensus 210 ~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 6778888888875 2211 2334332222111111 2223334433321 1111 10
Q ss_pred -------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH-HHH
Q 011652 235 -------------IVTYGIMVDVLCKAG-------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV-DTF 293 (480)
Q Consensus 235 -------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~ 293 (480)
...|...+..--..+ ..+.+..+|++..... +-....|...+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 122333333222221 1234556777776653 556778888888888889998996 999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---------CCC------------hhhHHHHHHHHHh
Q 011652 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV---------APN------------SRTCNIILNGLIG 352 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~~ 352 (480)
++.... ++.+...|-..+....+.|+++.|..+|+.+..... .|+ ...|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 998864 445666777788888899999999999999876310 132 2357777787788
Q ss_pred CCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011652 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.|+.+.|..+|.++.+. .......|...+..-.+.+ +.+.|.++|+...+. ++-+...|..++......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999999875 3344555655544444544 589999999998876 33467777888888888899999999
Q ss_pred HHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 431 LLEDMIEKGIRP--SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 431 ~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|++++.....+ ....|...+..-.+.|+.+.+..+.+++.+..+.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999998764322 3456888888888999999999999999887654
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=5.2e-14 Score=131.28 Aligned_cols=303 Identities=16% Similarity=0.084 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHhhc---CC---CC
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD---RF---IP 198 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~ 198 (480)
.....+......+...|++++|+..|+.+.+.+ +.+ ..++..+...+...|++++|...+++... .. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666777777777777777777777653 223 24566666777777777777777776543 10 11
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC-------------HHHHHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PD----IVTYGIMVDVLCKAGR-------------VDEALGIVKS 260 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~ 260 (480)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ ++++...
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 2344555566666666666666666665542100 01 1233444444444444 0000000
Q ss_pred hhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 011652 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK----NGILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 335 (480)
+++|...+++..+ .+..+ ...++..+...|...|++++|...+++..+..
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4444444444321 11000 12345555556666666666666666554321
Q ss_pred C-CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011652 336 V-APN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--AD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK- 403 (480)
Q Consensus 336 ~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 403 (480)
. .++ ...+..+...+...|++++|...+++.....+ .+ ..++..+...|...|++++|...+++....
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 011 12555566666667777777777766654111 11 445666677777777777777777766532
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCH
Q 011652 404 ---RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRP-SGETFGKLRKLLIKEGRE 460 (480)
Q Consensus 404 ---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 460 (480)
+..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1000 1345666667777777777777777776532 1111 123445555566555543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=2.7e-14 Score=133.23 Aligned_cols=300 Identities=12% Similarity=0.003 Sum_probs=178.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCC-C
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN----VETFCIIMRKYARVQKVEEAVYTFNVMQKY----GVTQ-N 165 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 165 (480)
.....+......+...|++++|...|+++....+.+ ..++..+...+...|++++|...+++..+. +-+| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 566777888889999999999999999998877644 357888899999999999999999887543 2112 2
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhcCCC--CC----hhhHHHHHHHhhcCCC--------------------hhHH
Q 011652 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PD----SKTYSILLEGWGKDPN--------------------LPRA 219 (480)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~~a 219 (480)
..++..+...+...|++++|...+++.....+ ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45678888899999999999999988765111 12 4478888888988898 7888
Q ss_pred HHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-Cc----cHHHHHHHHHHhhccCCHHHH
Q 011652 220 REIFREMVDT----GCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RP----TSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 220 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a 289 (480)
...+++..+. +..+ ...++..+...+...|++++|...+++...... .+ ...++..+..++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777765432 1011 123455555666666666666666665543210 00 012344444445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
...+++..+... ..+..+ ...++..+...+...|++++|...++.+.+
T Consensus 247 ~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 555444332100 000000 023344445555555555555555555444
Q ss_pred c--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCh
Q 011652 369 L--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFI-PSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 369 ~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~ 425 (480)
. ...+ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1 0111 344555666666666666666666654432 111 1234455555555555544
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=3.5e-14 Score=132.80 Aligned_cols=276 Identities=13% Similarity=0.048 Sum_probs=123.8
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCCh----hhHHHHHHHhhcCCChhHHHHHHHHHHHc----C-CCCChhhHHH
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDS----KTYSILLEGWGKDPNLPRAREIFREMVDT----G-CNPDIVTYGI 240 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 240 (480)
..+...+...|++++|...|++.....+.+. .++..+...+...|++++|...+++..+. + .......+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344455556666666666665554322232 34555555555556666666655555432 0 0112233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-----CCccHHHHHHHHHHhhccCC----------HHHHHHHHHHHHHCCCCCCH
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDSTV-----CRPTSFIYSVLVHTYGVENR----------IEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~ 305 (480)
+...|...|++++|...+++..... .+....++..+...|...|+ +++|...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------------- 198 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------------- 198 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------------
Confidence 4555555555555555555543320 01112234444444444444 0000000
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC--CCC----H
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EAD----A 374 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~ 374 (480)
+++|...+.+..+. +..+ ....+..+...+...|++++|...+++..+.. ..+ .
T Consensus 199 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 199 ---------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44444444443221 0000 11234444445555555555555555544410 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRF----I-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GI-RPSG 444 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 444 (480)
.++..+...|...|++++|...+++...... . ....++..+...+...|++++|..+++++.+. +. ....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2445555555555555555555555443210 0 01234455555555566666666655555432 10 0012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.++..+..++.+.|++++|.+.+++..++
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 24445555555666666666666555544
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=6e-12 Score=112.44 Aligned_cols=236 Identities=10% Similarity=0.050 Sum_probs=160.8
Q ss_pred hhhHHHHHHHhhcC----CCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHH
Q 011652 200 SKTYSILLEGWGKD----PNL----PRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------AGRV-------DEALGI 257 (480)
Q Consensus 200 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~ 257 (480)
...|...+..-.+. ++. ++|..+|++.+... +-+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666665443 233 57777888877643 2356677777766653 4765 788888
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA-MYNALIGAFCKANKFKNVYRVLKDMNSKGV 336 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 336 (480)
|++....-.+.+...|..++..+...|++++|..+|++..+.... +.. .|..++..+.+.|++++|..+|++..+.+.
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 888877322445667777888888888888888888888764221 233 677777777788888888888888877532
Q ss_pred CCChhhHHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHH
Q 011652 337 APNSRTCNIILNGLI-GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIP--SMHTF 412 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~ 412 (480)
. +...|........ ..|+.++|..+|+.+.+..+.+...|..++..+.+.|++++|..+|++..... .+| ....|
T Consensus 166 ~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp C-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2 3333433332222 36788888888888877666677788888888888888888888888887752 333 45677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
..++....+.|+.++|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777778888888888887764
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=5.3e-14 Score=131.58 Aligned_cols=278 Identities=12% Similarity=0.041 Sum_probs=177.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHhhcC------CCCC
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL----AAFNGLLSALCKSKNVRKAQEIFDCMKDR------FIPD 199 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 199 (480)
....+..+...+...|++++|+..|+++.+.+ +.+. .++..+..+|...|++++|...+++.... .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667788899999999999999998874 3343 47888899999999999999999988652 2334
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTG-----CNPDIVTYGIMVDVLCKAGR-----------------VDEALGI 257 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~ 257 (480)
..++..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999986531 11124567788888999999 7777777
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
+++.... ...... ......++..+...|...|++++|...+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 7665431 111100 0001223333444444444444444444444332000
Q ss_pred -CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011652 338 -PN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLK--- 403 (480)
Q Consensus 338 -p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 403 (480)
++ ...+..+...+...|++++|...++++....+ ....++..+...|...|++++|...+++....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00 12455555666666666666666666554111 11345666777777777777777777766542
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 404 -RF-IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 404 -~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+. .....++..+...|...|++++|...+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 10 011346666777777778888888877777653
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=5.9e-12 Score=112.49 Aligned_cols=219 Identities=8% Similarity=0.005 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYAR-------VQKV-------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
++|..+|++.....+.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 577778888877777778888877777653 4665 78888888887731144566777888888888
Q ss_pred CChhhHHHHHHHhhcCCCCChh-hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC-KAGRVDEALGI 257 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 257 (480)
|++++|..+|++..+..+.+.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888774343444 777788888788888888888888776532 23334433332221 25788888888
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILA--DVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 192 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88776653 3456677777777778888888888888877752 233 4567777777777788888888888777765
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=7.9e-14 Score=126.26 Aligned_cols=269 Identities=15% Similarity=0.041 Sum_probs=155.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CccHHHHHHH
Q 011652 206 LLEGWGKDPNLPRAREIFREMVDTGCNPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-RPTSFIYSVL 276 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 276 (480)
....+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++.... +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444455555555555554443211 1 133444445555555555555555443321 10 1113344555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HhHHHHHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGI-LAD----VAMYNALIGAFCKANK--------------------FKNVYRVLKDM 331 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~ 331 (480)
...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5555566666666665555432100 011 2345555566666666 66666666654
Q ss_pred HhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 332 NSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 332 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
... +..+ ....+..+...+...|++++|...++++.+. ..++ ..++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 331 1111 1235666677777788888888888777651 1111 236777888888888988888888877
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 401 KLKRFI-PS----MHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIR-PSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 401 ~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...... ++ ..++..+...+...|++++|...++++.+. +-. ....++..+...+.+.|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 642100 11 456777888888899999999998888643 111 11345677888889999999999999988
Q ss_pred HhhhC
Q 011652 471 NLLVK 475 (480)
Q Consensus 471 ~~l~~ 475 (480)
.++..
T Consensus 330 ~~~~~ 334 (338)
T 3ro2_A 330 LEISR 334 (338)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87654
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=8.5e-13 Score=122.08 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=157.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC----CCCc-cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC--CC----CCHHHHH
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDST----VCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--IL----ADVAMYN 309 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~ 309 (480)
....+...|++++|...+++.... +-.+ ...++..+..+|...|+++.|...+.+..+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777776543 1111 23556677777777777777777777765321 00 1134677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cC-CCCHHHHH
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVA-PN----SRTCNIILNGLIGRGETDEAYRVFRRMIK-----LC-EADADTYT 378 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 378 (480)
.+...|...|++++|...+.+..+.... ++ ..++..+..+|...|++++|...+++..+ +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888777653111 11 23677788888888999999988888877 34 44567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLK----RFIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPS-GETFGKL 450 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 450 (480)
.+...|...|++++|...+++..+. +-+.....+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888899999999999988877643 111122335667777888888 67777777665 22222 3356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 451 RKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 451 ~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
...|...|++++|.+.+++..++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988877543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.3e-12 Score=107.21 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
-++.+|..+...+.+.|++++|++.|++..+.+|.+..++..+...+...|++++|+..+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3667788888888888888888888888887777777888888888888888888888888777654 455666777777
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
.+...++++.|...+.+.....+.+...+..+...+.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 777788888888888877776566777777777888888888888888887776532 2566677777777777777777
Q ss_pred HHHHHHhhhC
Q 011652 255 LGIVKSMDST 264 (480)
Q Consensus 255 ~~~~~~~~~~ 264 (480)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777777664
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.6e-12 Score=105.31 Aligned_cols=166 Identities=15% Similarity=0.165 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
++.+|..+...|...|++++|+..|++..+... .+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 455666666677777777777777776665432 25566666666666677777777666666654322 3445555556
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
.+...++++.|...+.......+.+...+..+..+|.+.|++++|.+.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 666666666676666666665566666666666666666677777666666665442 2556666666666666666666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666665
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=5.6e-13 Score=120.61 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCE--AD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RF-IPSMH 410 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~ 410 (480)
.+..+...+...|++++|...+++.....+ .+ ..++..+...|...|++++|...+++.... +. .....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 444455555555566666555555544111 11 345566666666777777777766665432 10 01134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
++..+...|...|++++|...++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5666777777777777777777777653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.4e-12 Score=120.60 Aligned_cols=229 Identities=7% Similarity=-0.027 Sum_probs=157.5
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCccHHHHH
Q 011652 206 LLEGWGKDPNLPRAREIFREMVDT----GCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV------CRPTSFIYS 274 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~ 274 (480)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..... .+....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566677777777777777642 1111 23456667777777788887777777765421 011234667
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC-CCChhhHH
Q 011652 275 VLVHTYGVENRIEDAVDTFLEMEKNGIL-AD----VAMYNALIGAFCKANKFKNVYRVLKDMNSK----GV-APNSRTCN 344 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 344 (480)
.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7778888888888888888776532100 11 246777888888899999999988887762 22 22355678
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSVL 415 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l 415 (480)
.+...+...|++++|...+++..+. .+.....+..+...|...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888889999999999999888761 22223345677888888888 77777777765 2222 23567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 011652 416 INGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998874
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.3e-12 Score=124.00 Aligned_cols=213 Identities=8% Similarity=-0.038 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI-EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
+++++..++...... +.+...+..+..++...|++ ++|+..|++..+... .+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666555432 34566677777777777777 777777777766532 246677777777888888888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhC---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------CCHHH
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIGR---------GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG--------GELEK 392 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 392 (480)
+..+.. |+...+..+...+... |++++|...++++.+..+.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 777753 5556777777777777 8888888888888776677778888888888777 77888
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 393 AFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 393 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
|.+.|++..+.... -+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888887775420 267778888888888888888888888887654 2345567777777777787777776443
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=1.7e-12 Score=123.17 Aligned_cols=213 Identities=11% Similarity=0.017 Sum_probs=143.3
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL-PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
++++...++......+.+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555554455666677777777777777 7777777777664322 456677777777777777777777777
Q ss_pred hhhCCCCccHHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHhH
Q 011652 261 MDSTVCRPTSFIYSVLVHTYGVE---------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA--------NKFKN 323 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~ 323 (480)
..+.. |+...+..+..++... |++++|...+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 76653 4456667777777777 77777777777776653 22566777777777776 77777
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 324 VYRVLKDMNSKGVA--PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 324 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
|...|++..+.... -+...+..+..+|...|++++|.+.|+++.+..+.+...+..+..++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777764220 2556677777777777777777777777777666667777777777777777777766544
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=3.8e-10 Score=110.13 Aligned_cols=392 Identities=9% Similarity=0.054 Sum_probs=270.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK---VEEAVYTFN 155 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 155 (480)
..+..|+.....++ .|...|..++..+.+.+.++.+..+|+++....|.+...|...+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45555655544444 5999999999999999999999999999999988899999999999888898 999999999
Q ss_pred HHHhcC-CCCCHHHHHHHHHHHHccCCh--------hhHHHHHHHhhc--CC--CCChhhHHHHHHHhhc---------C
Q 011652 156 VMQKYG-VTQNLAAFNGLLSALCKSKNV--------RKAQEIFDCMKD--RF--IPDSKTYSILLEGWGK---------D 213 (480)
Q Consensus 156 ~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~--~~--~~~~~~~~~l~~~~~~---------~ 213 (480)
+..... .+|++..|...+....+.++. +...++|+.... +. ..+...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998864 248999999888776665554 334578887665 33 3345788888876543 3
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------------CHHHHHHHHHHhhhC--CC----C-------
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-------------RVDEALGIVKSMDST--VC----R------- 267 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------~~~~a~~~~~~~~~~--~~----~------- 267 (480)
++++.+..+|++.+......-..+|......-...+ +++.|...+.++... ++ +
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 356778899999885311111233433222211111 123344444432210 11 1
Q ss_pred ----c-----c---HHHHHHHHHHhhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH-HH
Q 011652 268 ----P-----T---SFIYSVLVHTYGVEN-------RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY-RV 327 (480)
Q Consensus 268 ----~-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~ 327 (480)
| + ...|...+..--..+ ..+.+..+|++.... .+-....|-..+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 123444444322222 123456678887764 3347788888888888899999996 99
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC----------CC------------CHHHHHHHHHHHH
Q 011652 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC----------EA------------DADTYTMMIKMFC 385 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~------------~~~~~~~l~~~~~ 385 (480)
+++.... ++.+...+...+......|+++.|.++|+.+.... .| ...+|...++...
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9999875 33355567778888889999999999999988631 13 2347888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
+.|+.+.|.++|..+.+....+....|...+..-.+. ++.+.|.++|+..++. .+.+...+...+......|+.+.|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998761112344554433333344 4589999999999976 4456777888899888999999999
Q ss_pred HHHHHHHhhhC
Q 011652 465 FLQEKMNLLVK 475 (480)
Q Consensus 465 ~~~~~~~~l~~ 475 (480)
.++++..+..+
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99999876543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=121.96 Aligned_cols=249 Identities=13% Similarity=0.082 Sum_probs=121.6
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (480)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 3445556666666666666666666665542 111123444555555555556655555555544320
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-ChhhHH
Q 011652 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRTCN 344 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~ 344 (480)
........+....++..+...|...|++++|...++++.+. +..| ....+.
T Consensus 100 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 100 ----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 00000000111233444444444455555555554444332 1111 223455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKL--------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-------RFIPS- 408 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~- 408 (480)
.+...+...|++++|..+++++.+. .+....++..+..+|...|++++|.+.++++.+. ...+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 5555666666666666666665542 2222345666667777777777777777666542 01111
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 409 ------MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 409 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
...+..+...+...+.+.++...++...... .....++..+..++.+.|++++|.+.+++..++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122222333444556666666666665432 234556778888899999999999999988887654
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=1.2e-11 Score=113.95 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=142.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCC-----CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CC-CC-CHHHHHHH
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVC-----RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GI-LA-DVAMYNAL 311 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l 311 (480)
..+...|++++|+..+++...... .....++..+..+|...|+++.|...+.+..+. +. .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345566677777776666654210 112345566666677777777777766665431 10 10 13456666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCHHHHHHHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMI 381 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~ 381 (480)
...|...|++++|...+.+..+. +..+ ...++..+..++...|++++|...+++... +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 77777777777777777766542 1111 123566677777778888888888877776 4444566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKR----FIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPS-GETFGKLRKL 453 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 453 (480)
..|.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 88888888888888888776531 11123345555556666677 66666666652 22222 2345567788
Q ss_pred HHhcCCHHHHHHHHHHHHhhh
Q 011652 454 LIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|...|++++|.+.+++..++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 888888888888888876653
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.1e-13 Score=119.58 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKY-------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
..++..+...+...|++++|..+++++.+. ..+....++..+..++...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 445555666666666666666666655542 112223445555555555555555555555543210
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCccHHHHHHH
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------V-CRPTSFIYSVL 276 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 276 (480)
.............++..+...+...|++++|...+++..+. + .+.....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 00000000112233444444555555555555555444332 1 11123345555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKN------GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
...+...|++++|...++++.+. +..| ...++..+...|...|++++|...++++.+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666555432 1111 233455566666667777777776666654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=3.7e-11 Score=110.79 Aligned_cols=229 Identities=5% Similarity=-0.060 Sum_probs=157.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-C-ccHHHH
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGC-NPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-R-PTSFIY 273 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~ 273 (480)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++.... +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888877764311 112 345666777788888888888887776542 10 1 124566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCChhhH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNS-----KGVAPNSRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 343 (480)
..+..+|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77788888888888888888776542 1111 134677788888889999999998888876 4222 35677
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSV 414 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~ 414 (480)
..+...+.+.|++++|...+++..+. .+.....+..+...|...++ +.+|...+++. +..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 78888889999999999999988872 22234456666667777777 77777777652 2222 2346667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+...|...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999998864
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=3.4e-11 Score=98.53 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+..+.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3445555666666777777777766655422 245566666666777777777777777776655666777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
..|++++|.+.++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777766532 356667777777777777777777777777653 3356667777777777777777777
Q ss_pred HHHHHHhhhCC
Q 011652 466 LQEKMNLLVKE 476 (480)
Q Consensus 466 ~~~~~~~l~~~ 476 (480)
.+++..++.+.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 77777666543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2e-11 Score=99.96 Aligned_cols=165 Identities=13% Similarity=0.021 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566667777777888888888877776666667777777777777788888887777777654 44566777777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
...|++++|.+.++++....+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777766555566677777777777777777777777766553 2245566666667777777777777
Q ss_pred HHHHhhh
Q 011652 257 IVKSMDS 263 (480)
Q Consensus 257 ~~~~~~~ 263 (480)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.5e-10 Score=106.49 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=192.7
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-----hhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC-CCh----hhH
Q 011652 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-----KTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PDI----VTY 238 (480)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 238 (480)
.......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33444566678999999999888766433332 14566777788889999999998887643211 121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--c-cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC----CCHHH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDST----VCR--P-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL----ADVAM 307 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~ 307 (480)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56677788889999999888887542 211 2 2345666777888889999999888887653221 12356
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhCCChHHHHHHHHHHHhcCCC----CHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS-RTCN-----IILNGLIGRGETDEAYRVFRRMIKLCEA----DADTY 377 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 377 (480)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++......+. ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 677777888889999998888887653212111 1121 2233466888888888888887662221 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLK----RFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++.....-. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 67778888888888888888876542 222222 25666677788888888888888888753100 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHhhhC
Q 011652 453 LLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+...| +....+++.+.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 344444 556666666655443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.7e-10 Score=106.23 Aligned_cols=262 Identities=13% Similarity=-0.003 Sum_probs=142.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHhhcC--CCCC----hhhHHHHHHHh
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLA----AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPD----SKTYSILLEGW 210 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~ 210 (480)
+...|++++|...++.........+.. +++.+...+...|++++|...+++.... ...+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334455555555554444332111111 2333444444555555555555544330 0011 12234455555
Q ss_pred hcCCChhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----ccHHHHHHHHHH
Q 011652 211 GKDPNLPRAREIFREMVDT----GCN--P-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR----PTSFIYSVLVHT 279 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~ 279 (480)
...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5666666666666555432 111 1 1233444556666677777777776665443211 123455666677
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---hhhHHHHHHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILA--DVAMYN----ALIGAFCKANKFKNVYRVLKDMNSKGVAPN---SRTCNIILNGL 350 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~ 350 (480)
+...|++++|...+++.......+ ...... ..+..+...|++++|...+.+.......+. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 777778887777777765321111 111111 223346678888888888877765432211 12345667778
Q ss_pred HhCCChHHHHHHHHHHHhc-----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 351 IGRGETDEAYRVFRRMIKL-----CEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
...|++++|...++..... .+++. ..+..+..++...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888887651 11122 3566677888888999999998888764
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.9e-11 Score=120.73 Aligned_cols=167 Identities=11% Similarity=0.016 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++.+|+.+...+.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.|++..+.. +.+..+|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999999988889999999999999999999999999998875 557889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
++...|++++|++.|++..+..+.+...|+.+...+.+.|++++|++.|++.++.... +...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999998866778899999999999999999999999999886432 577889999999999999999
Q ss_pred HHHHHHhhh
Q 011652 255 LGIVKSMDS 263 (480)
Q Consensus 255 ~~~~~~~~~ 263 (480)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887754
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=5.2e-11 Score=117.59 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+..+++.+..+|.+.|++++|+..|++..+... -+..++..+..+|.+.|++++|...|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345566666666666666666666666555421 23555566666666666666666666666554222 3445555666
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
++...|++++|++.|+++.+..+.+...|..+..+|...|++++|.+.|++..+.... +...|..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666665555555566666666666666666666666665554322 445555566666666666666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=1.4e-10 Score=98.63 Aligned_cols=198 Identities=12% Similarity=-0.035 Sum_probs=156.4
Q ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
.++..+......+...|++++|...|++..+....++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888888999999999999999999988754467777777889999999999999999999986433 566788899
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLIN 417 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 417 (480)
.++...|++++|...+++..+..+.+. ..|..+...+...|++++|.+.++++.+.+ |+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999998777777 568888889999999999999999998764 54 467777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|...| ...++++...+ ..+...+.... ....|.+++|...+++..++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 776544 44456665543 23444444433 34457789999999999888764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=3.1e-10 Score=96.44 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=156.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.|...+......+...|++++|+..|++......+++...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888889999999999999999999998764377788888999999999999999999999986432 567888899
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNS-------RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKM 383 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 383 (480)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|...++++.+..+. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999886332 34 45777788889999999999999999986566 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 86544 444555555432 2444554443 334567899999999999854
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=3.8e-11 Score=105.61 Aligned_cols=228 Identities=14% Similarity=0.095 Sum_probs=156.8
Q ss_pred HhcCCHHHHHHHHHHhhh-------CCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMDS-------TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN------GI-LADVAMYNAL 311 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 311 (480)
...|++++|+.++++... ...+....++..+..++...|++++|...+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 346677777666666544 232345677888999999999999999999998753 11 2235678888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhc--------CCCCHHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------CEADADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 376 (480)
...|...|++++|...+.+..+. ...| ....+..+...+...|++++|...++++.+. .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1112 3567788888999999999999999998873 3334567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHH------HHHHHHHHcCCCC
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK-------RFIPS-MHTFSVLINGLCDKGIVSDSC------VLLEDMIEKGIRP 442 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~~p 442 (480)
+..+..+|...|++++|...++++.+. ...+. ...|..+...+...+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 11122 223443433343333322222 22221110 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
...++..+..++...|++++|.+++++..++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 23457788999999999999999999987764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=5.6e-11 Score=104.50 Aligned_cols=226 Identities=11% Similarity=0.013 Sum_probs=160.8
Q ss_pred hcCCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CccHHHHHHH
Q 011652 211 GKDPNLPRAREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------VC-RPTSFIYSVL 276 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 276 (480)
...|++++|..++++..+. ..+....++..+...|...|++++|...+++.... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888877642 11224667888999999999999999999998754 21 3346678889
Q ss_pred HHHhhccCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-Chhh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKN------G-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRT 342 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~ 342 (480)
..++...|++++|...+.+..+. . .+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998754 1 1223567888889999999999999999998764 1122 3457
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhCCCCC
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKL---------CEADADTYTMMIKMFCQGGELEKA------FKVWKYMKLKRFIP 407 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a------~~~~~~~~~~~~~p 407 (480)
+..+...+...|++++|...++++.+. .+.....|..+...+...+....+ ...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998762 222333444444444443333322 222222211 1122
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...++..+...|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346788899999999999999999999875
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=8.4e-10 Score=97.58 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=109.8
Q ss_pred HHHhcCCHHHHHHHHHHhhhC----CCCcc-HHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 011652 244 VLCKAGRVDEALGIVKSMDST----VCRPT-SFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIG 313 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 313 (480)
.|...|++++|.+.+.+.... +.++. ..+|+.+..+|...|++++|+..+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666555332 21111 345666666666777777777666665432 1000 1345667777
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH-------HHHHHH
Q 011652 314 AFCKA-NKFKNVYRVLKDMNSKGVAP-N----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMM 380 (480)
Q Consensus 314 ~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l 380 (480)
.|... |++++|...+++..+..... + ..++..+...+...|++++|...++++.+..+.+. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 88888888887776531110 1 23566677777788888888888887776322211 145667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHH
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMH------TFSVLINGLC--DKGIVSDSCVLLEDM 435 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~ 435 (480)
..++...|++++|...+++..+.. |+.. .+..++.++. ..+++++|+..|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777777788888888887776643 3211 2333444443 345566666666554
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=5.8e-09 Score=90.48 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC-----CHHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-----DVAMYNA 310 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 310 (480)
++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.+. .| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHH
Confidence 333444445555555555555554433321 123334444445555555555555555555442 22 1233333
Q ss_pred HHHHHH--HcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc----------CCCCHHH
Q 011652 311 LIGAFC--KAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----------CEADADT 376 (480)
Q Consensus 311 li~~~~--~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~ 376 (480)
+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. .+.++.+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 333321 112 455555555555443 222222222333445555555555555543331 1334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+..++......|+ +|.+++.++.+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4334333333443 445555555443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=1.3e-08 Score=88.30 Aligned_cols=250 Identities=8% Similarity=0.008 Sum_probs=166.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
|+-..-.|++..++.-.. +..+ ........+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 344455788888777333 2223 3344555566888888877642 1123444444444433 3322
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC-NPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
|...|++.....+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67778777664456666677888888999999999999998876553 125667778888999999999999999999
Q ss_pred hhCCCCc-----cHHHHHHHHHHh--hc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 262 DSTVCRP-----TSFIYSVLVHTY--GV--ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 262 ~~~~~~~-----~~~~~~~l~~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775 45 345555555552 22 34899999999998765 3443333444458888999999999998766
Q ss_pred hCC-----C----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHH
Q 011652 333 SKG-----V----APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376 (480)
Q Consensus 333 ~~~-----~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 376 (480)
+.- . +-+..++..++......|+ +|.++++++.+..|.++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 531 0 2255666566656666676 7888888888866666654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=7.7e-10 Score=84.96 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.|..+...+...|++++|..+++.+....+.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 455566666677777777777777666555566666666666777777777777776666554 4455566666666666
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
.|++++|...++++....+.+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666554444555666666666666666666666666654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=2e-09 Score=82.54 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+...|++++|..+++.+.+..+.+...+..+...+...|++++|.+.++++...+. .+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHh
Confidence 334444555555555555555555554444555555555555555666666666655554331 2444555555556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 66666666666655432 2234555555666666666666666666655544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.3e-09 Score=94.74 Aligned_cols=187 Identities=12% Similarity=0.020 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-C-CCHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-T-QNLAAF 169 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 169 (480)
.++..+......+.+.|++++|...|+.+....+.+ ..++..+..++...|++++|+..|+...+... . ....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 467777778888888899999999999988877644 77888888888899999999999988887531 1 224556
Q ss_pred HHHHHHHHc--------cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 011652 170 NGLLSALCK--------SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241 (480)
Q Consensus 170 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (480)
..+..++.. .|++++|...|+++....|.+......+... ...... -...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI--------------RELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH--------------HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH--------------HHHHHH----HHHHHHHH
Confidence 667777777 8888888888888877544444444222110 000000 00113344
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHC
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRP--TSFIYSVLVHTYGVE----------NRIEDAVDTFLEMEKN 299 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 299 (480)
...|...|++++|+..++.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 555666666666666666665432111 223444555555544 5666666666666553
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=1.4e-09 Score=90.83 Aligned_cols=113 Identities=7% Similarity=0.057 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI----------------IMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+..+......+.+.|++++|...|++.....|.+...|.. +...+...|++++|+..|++..+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344445556667777777777777777665544444444 444555555555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
. |.+...+..+..++...|++++|...|++..+..|.+..+|..+...|
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3 334444445555555555555555555554443344444444444444
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=8.5e-10 Score=109.44 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=133.0
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 108 AKIRQYQIMWDLVNAMR--------TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
...|++++|++.+++.. ...+.+...+..+...+...|++++|++.|+++.+.+ +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67788888888888887 6666677788888888888888888888888887764 55677888888888888
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|++++|...|++..+..+.+...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|++.++
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888877666677888888888888888888 8888888775432 56677888888888888888888888
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENR 285 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (480)
+..+.. +.+...+..+..++...++
T Consensus 559 ~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTS-TTHHHHHHHHHHHTC----
T ss_pred hhcccC-cccHHHHHHHHHHHHccCC
Confidence 887653 3345566667777665554
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=2.2e-07 Score=88.07 Aligned_cols=357 Identities=10% Similarity=0.035 Sum_probs=199.2
Q ss_pred CCCHHHHHHHHHHHhh-CcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC-C--CCCHHHH
Q 011652 60 RVSPEIVEDVLEKFRN-AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ-YQIMWDLVNAMRTK-R--MLNVETF 134 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~--~~~~~~~ 134 (480)
.-...++...+..++. ....+.++|+...... |++..|...+....+.+. .+....+|+..... | +.+...|
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3445667777777763 3348899998886642 699999999988877763 45677788876653 3 3677888
Q ss_pred HHHHHHHH----HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------------cCChhhHHHHHHHhhcCCC
Q 011652 135 CIIMRKYA----RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK-------------SKNVRKAQEIFDCMKDRFI 197 (480)
Q Consensus 135 ~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~ 197 (480)
...+..+. .+++.+.+..+|++.+......-...|......-.. .+.+..|..+++.+....+
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 88887654 356788899999999874211112233322221111 1122333444444332111
Q ss_pred -CChhhHHHHHHHhhcCC--C-----hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc
Q 011652 198 -PDSKTYSILLEGWGKDP--N-----LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269 (480)
Q Consensus 198 -~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (480)
.+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 13345555555432221 1 234566777777643 335666777777777788888888888888776 333
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011652 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---------ILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
...+.. |+...+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|.+. .. ..
T Consensus 246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~ 316 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG 316 (493)
T ss_dssp SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC
T ss_pred HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC
Confidence 322222 1111111111 22221110 000 1233444555555566777777777777 22 11
Q ss_pred CChhhHHHHHHHHHh-CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 338 PNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 338 p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.+...|......-.. .++.+.|..+|+...+..+.++..+...++.....|+.+.|..+|+.+. .....|...+
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 222333322221122 2357777777777777555555566666666667777777777777762 1456666666
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 011652 417 NGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~ 436 (480)
..-...|+.+.+..+++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66566677777777776665
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=4.6e-09 Score=92.79 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=60.5
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhcCC----CC--ChhhHHHHHHHhhcC-CChhHHHHHHHHHHHcCCCC-C----h
Q 011652 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRF----IP--DSKTYSILLEGWGKD-PNLPRAREIFREMVDTGCNP-D----I 235 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 235 (480)
+|+.+..+|...|++++|...+++..... .+ -..+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44444444444445444444444443200 00 023444555555553 55555555555544321000 0 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH------HHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS------FIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.++..+...+...|++++|+..+++.......... ..+..+..++...|++++|...|++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555556666666555555543211111 1344455555555666666666555543
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1e-07 Score=83.58 Aligned_cols=125 Identities=8% Similarity=-0.049 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCHHHHHHHHHHH----HHh---CCHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR--QYQIMWDLVNAMRTKRMLNVETFCIIMRKY----ARV---QKVEE 149 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~ 149 (480)
.|++.++.+...++ -+..+|+..-..+...+ ++++++++++.+...+|.+..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 44444444443332 23444444444444444 444444444444444444444443333332 222 33444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh--hHHHHHHHhhcCCCCChhhHHHH
Q 011652 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR--KAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.++++.+..+.|...|+.-
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R 186 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 444444444332 333334443333333334333 44444444443333333444333
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=1e-08 Score=88.97 Aligned_cols=170 Identities=8% Similarity=-0.011 Sum_probs=109.1
Q ss_pred CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC-hh
Q 011652 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PN-SR 341 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~-~~ 341 (480)
+.+...+..+...+...|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++..+..+. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566667777788888888888888888765322 2 566777778888888888888888888775321 11 33
Q ss_pred hHHHHHHHHHh--------CCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 011652 342 TCNIILNGLIG--------RGETDEAYRVFRRMIKLCEADADTY-----------------TMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 342 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 396 (480)
.+..+..++.. .|++++|...|+++.+..|.+.... ..+...|...|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 45566666777 8888888888888887555544443 3445556666666666666
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 011652 397 WKYMKLKRFIP--SMHTFSVLINGLCDK----------GIVSDSCVLLEDMIE 437 (480)
Q Consensus 397 ~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 437 (480)
|+++.+..... ....+..+..+|... |++++|...|+++.+
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 66665532110 123455555555544 555666666666554
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=4.8e-07 Score=85.69 Aligned_cols=343 Identities=8% Similarity=-0.003 Sum_probs=219.7
Q ss_pred CChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHc----cCChh
Q 011652 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKY-GV-TQNLAAFNGLLSALCK----SKNVR 183 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~----~~~~~ 183 (480)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. +.+...|...+..+.. .++.+
T Consensus 28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 8899999999999874 3699999999988887773 45677888877653 43 3467888888876543 46788
Q ss_pred hHHHHHHHhhcCCCCC--hhhHHHHHHHhhc-------------CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011652 184 KAQEIFDCMKDRFIPD--SKTYSILLEGWGK-------------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
.+.++|++.... |+. ...|......-.. .+.+..|..+++.+...-...+...|...+..-...
T Consensus 107 ~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 107 KIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 899999999872 221 1222222211100 112333444444443210001233555544433221
Q ss_pred --CC-----HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 249 --GR-----VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 249 --g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
|- .+.+..+|+++.... +.+...|...+..+...|+.+.|..++++.... +.+...+. .|......
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 345677888887753 556778888888889999999999999999887 33333322 23322222
Q ss_pred hHHHHHHHHHHhC---C------CCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q 011652 322 KNVYRVLKDMNSK---G------VAP---NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG- 388 (480)
Q Consensus 322 ~~a~~~~~~~~~~---~------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 388 (480)
++. ++.+.+. . ..+ ....|...+..+.+.++.+.|..+|+++ ...+.+...|...+..-...+
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence 222 2222211 0 001 1245666666666788899999999999 422235556654443333334
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
+.+.|..+|+...+.. +-+...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6999999999988753 2245667777887788899999999999972 257788888888888999999999887
Q ss_pred HHHh
Q 011652 469 KMNL 472 (480)
Q Consensus 469 ~~~~ 472 (480)
+..+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=5.6e-09 Score=87.11 Aligned_cols=181 Identities=10% Similarity=0.036 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+......+...|++++|+..|+...+.. |.+...+... .... ...........+..++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~-------------~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDK-------------NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCT-------------TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcc-------------hhhhhHHHHHHHHHHH
Confidence 3444555566778889999999988887753 2233344330 0000 0000111222345555
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC--HHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR--IED 288 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 288 (480)
.+.|++++|...|++..+.... +...+..+..++...|++++|...|++..+.. +.+..++..+..+|...|+ .+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555555544221 34455555555555555555555555555543 3344445555554443332 223
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
+...+..... ..|....+.....++...|++++|...|++..+.
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3333333321 1111122222333444455666666666665553
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=1.4e-07 Score=82.69 Aligned_cols=223 Identities=9% Similarity=0.016 Sum_probs=182.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hcc---
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ--KVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL----CKS--- 179 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~--- 179 (480)
+....++|+.+++.+...+|-+..+|+.--..+...| +++++++.++.+.... +-+..+|+.--.++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3344568999999999999989999999988888888 9999999999999875 55667777655555 445
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------H
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP--RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------V 251 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 251 (480)
+++++++.+++.+.+..+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 78999999999999987889999998888888888888 999999999987654 77788777767777776 8
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED-AVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
+++++.++.+.... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999998875 6688889888888888887544 555666655432 2347888999999999999999999999
Q ss_pred HHHHhC
Q 011652 329 KDMNSK 334 (480)
Q Consensus 329 ~~~~~~ 334 (480)
+.+.+.
T Consensus 282 ~~l~~~ 287 (306)
T 3dra_A 282 DLLKSK 287 (306)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999863
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=5e-09 Score=103.94 Aligned_cols=173 Identities=6% Similarity=-0.069 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHHHhh--------hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMD--------STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
...|++++|++.+++.. ... +.+...+..+..++...|++++|...|++..+... .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67888999999998887 332 44567788888888899999999999998876532 367788888888899
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
.|++++|...|++..+.... +...+..+..++.+.|++++ .+.|+++.+..+.+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998876433 56677888888889999999 99999988877888889999999999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 011652 398 KYMKLKRFIPS-MHTFSVLINGLCDKGI 424 (480)
Q Consensus 398 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 424 (480)
+++.+.+ |+ ...+..+..++...++
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 9887754 44 5667777777766554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=2.2e-09 Score=86.97 Aligned_cols=161 Identities=7% Similarity=-0.030 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA-LCK 178 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ 178 (480)
+......+.+.|++++|...|++.....|.+...+..+...+...|++++|+..++...+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44455666777777777777777766666677777777777777777777777777776543 244333222211 112
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.+....|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223345666666655445556666666666666666666666666666543322 234555666666666666666666
Q ss_pred HHHhh
Q 011652 258 VKSMD 262 (480)
Q Consensus 258 ~~~~~ 262 (480)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=6e-09 Score=91.71 Aligned_cols=166 Identities=11% Similarity=-0.031 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH-HH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-LL 173 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll 173 (480)
.+...+..+...+.+.|++++|...|++.....|.+...+..+...+...|++++|...++.+.... |+...... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4566777778888888888888888888888888788888888888888888888888888887653 44433322 22
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 252 (480)
..+...++.+.|...+++.....|.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 335566777778888888777667778888888888888888888888888887754221 2456777777777778877
Q ss_pred HHHHHHHHhh
Q 011652 253 EALGIVKSMD 262 (480)
Q Consensus 253 ~a~~~~~~~~ 262 (480)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776554
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.6e-08 Score=85.44 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH---HHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL---AAF 169 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 169 (480)
++..+..+...+.+.|++++|+..|+.+....+. ....+..+..++.+.|++++|+..|+.+.+.. |.+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 5566667777888899999999999998876652 24678888889999999999999999988754 2222 234
Q ss_pred HHHHHHHHc------------------cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 170 NGLLSALCK------------------SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 170 ~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
..+..++.. .|+.++|...|+++.+..|.+...+....... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH----
Confidence 334444433 45677777777777665554444433221110 0000000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP--TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (480)
.....+...|.+.|++++|+..++.+.+..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345677888999999999999988763111 12467788889999999999999999888764
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=1.9e-09 Score=84.64 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
.+...|++++|...+......... +...+..+...|.+.|++++|++.|+++.+..|.++.+|..+..+|...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 344456677777777666553111 3345556677777777777777777777776677777777777777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL-LEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
...|++..+.+.. +...|..+...|.+.|++++|.+. ++++.+.. +-++.+|......+...|+
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8777777765432 566777777777777777665554 46666643 2245555555555555553
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=8.3e-10 Score=86.74 Aligned_cols=108 Identities=10% Similarity=-0.088 Sum_probs=48.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 011652 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 189 (480)
.|++++|+..++......+.++..+..+...|...|++++|++.|++..+.. |.+..+|..+..+|...|++++|...|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 3444444444444433322223333344444444444444444444444433 334444444444444444444444444
Q ss_pred HHhhcCCCCChhhHHHHHHHhhcCCChhH
Q 011652 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
++..+..|.+..+|..+...+.+.|++++
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 44444333344444444444444444443
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=4.3e-08 Score=82.85 Aligned_cols=190 Identities=6% Similarity=-0.013 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh--hhHHH
Q 011652 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS--RTCNI 345 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ 345 (480)
...+..+...+...|++++|...|+++.+.... + ....+..+..+|.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556667788888899998888888764322 1 1356777778888888888888888888875332111 12333
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 346 ILNGLIG------------------RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 346 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
+..++.. .|+.++|...|+++.+..|.+...+........ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence 3333332 345566666666655544444333322111000 00000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|++++|.+.++.+....+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113456678888999999999999887532111 2457778888999999999999998887765544
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=7.6e-09 Score=100.80 Aligned_cols=150 Identities=12% Similarity=-0.012 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
..|.+.|+.+.+..+ .+...|..+...+.+.|++++|.+.|++..+..+.+..++..+...+...|++++|.+.+++.
T Consensus 6 ~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 367777777655433 467788888888888888888888888888877777888888888888888888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC---CChhHHHHHHHHHHHcC
Q 011652 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD---PNLPRAREIFREMVDTG 230 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 230 (480)
.+.. +.+...+..+..++...|++++|.+.+++..+..+.+...+..+...+... |++++|.+.+++..+.+
T Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 84 SDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7764 456777888888888888888888888888776566777888888888888 88888888888887654
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.9e-08 Score=98.03 Aligned_cols=154 Identities=7% Similarity=-0.068 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 011652 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362 (480)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 362 (480)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987653 236788999999999999999999999999987433 567888899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 011652 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 439 (480)
+++..+..+.+...+..+..+|...|++++|.+.+++..+... .+...+..+...+... |++++|.+.++++.+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999998788899999999999999999999999999988653 3678889999999999 99999999999999765
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=1.9e-08 Score=88.51 Aligned_cols=168 Identities=9% Similarity=-0.070 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
+.+...+..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|...++++....+..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3455666777777788888888888888877764 556677777888888888888888888877664332222222233
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHhhccCCH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR-PTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 286 (480)
..+...++.++|...+++...... .+...+..+...+...|++++|...+.++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 335566667777777777766532 25666777777777777777777777777765321 1245666777777777777
Q ss_pred HHHHHHHHHHH
Q 011652 287 EDAVDTFLEME 297 (480)
Q Consensus 287 ~~a~~~~~~~~ 297 (480)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666543
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=6.6e-09 Score=84.11 Aligned_cols=157 Identities=8% Similarity=0.029 Sum_probs=80.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCC
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGE 355 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~ 355 (480)
...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+.......... +...++
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 334444455555555554443321 1134444555555555555555555555544331 122111111101 111122
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
...|...+++..+..|.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2335566666666555666666677777777777777777777666654322 244666666666666777777766665
Q ss_pred HH
Q 011652 435 MI 436 (480)
Q Consensus 435 ~~ 436 (480)
.+
T Consensus 170 al 171 (176)
T 2r5s_A 170 QL 171 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=8.8e-08 Score=80.00 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC----CHHHHHHHHH
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN----RIEDAVDTFL 294 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~ 294 (480)
|.+.|++..+.| +...+..+...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554432 44445555555555555555555555555443 33444444444444 3 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhC
Q 011652 295 EMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 334 (480)
+..+.| +...+..+...|.. .+++++|...|++..+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 554432 33444444444443 44455555555544443
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=2.4e-07 Score=77.31 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=82.9
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHH
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN----KFKNVYRVLK 329 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 329 (480)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554433 44445555555555555555555555555543 34444444444444 4 5555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQ----GGELEKAFKVWKY 399 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 399 (480)
+..+.| +...+..+...|.. .++.++|.++|++..+..+. ++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33344444444444 45555555555555442111 14445555555554 4455555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHc
Q 011652 400 MKLKRFIPSMHTFSVLINGLCDK-G-----IVSDSCVLLEDMIEK 438 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 438 (480)
..+.+ .+...+..+...|... | +.++|..+|++..+.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55441 1233444444444332 1 455555555555443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=2.2e-08 Score=89.14 Aligned_cols=164 Identities=9% Similarity=0.031 Sum_probs=76.2
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc-CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.|++++|.+++++..+..+. .+.+ .+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 45566666666665542111 0222 45666666665543 3345566777777666
Q ss_pred HHHhhhC----CCC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 011652 258 VKSMDST----VCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 258 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
+.+.... +-. .-..+|..+..+|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 6655432 100 01234555555555666666666666554321 1000 02234444444444 555555555
Q ss_pred HHHHHhCCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 328 LKDMNSKGVAP-----NSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 328 ~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
+++..+..... ...++..+...+...|++++|+..++++.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55444321000 012344444444445555555555544443
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=1.4e-06 Score=77.22 Aligned_cols=147 Identities=7% Similarity=-0.017 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-C-CHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV-Q-KVEEAVYTFN 155 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~ 155 (480)
.|+++++.+...++ -+..+|+..-..+...| .+++++.+++.+...++.+..+|+.-...+... + ++++++++++
T Consensus 72 ~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 56666666655443 35566666666666666 366666666666666666666666665555555 5 5666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChh--------hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC-------hhHHH
Q 011652 156 VMQKYGVTQNLAAFNGLLSALCKSKNVR--------KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN-------LPRAR 220 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~ 220 (480)
.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+.|...|+.....+.+.+. +++++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 666544 445555555444444444443 55555555555444455555555555544443 34444
Q ss_pred HHHHHHHH
Q 011652 221 EIFREMVD 228 (480)
Q Consensus 221 ~~~~~~~~ 228 (480)
+.+++++.
T Consensus 229 e~~~~aI~ 236 (349)
T 3q7a_A 229 IYILKSIH 236 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=2.5e-08 Score=88.78 Aligned_cols=223 Identities=10% Similarity=0.077 Sum_probs=159.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHH
Q 011652 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (480)
.|++++|.+++++..+... . .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887765321 1 1222 57888888877754 456778899999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC---CCCC--hhhHHHHHHHHHhCCChHHHHH
Q 011652 292 TFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG---VAPN--SRTCNIILNGLIGRGETDEAYR 361 (480)
Q Consensus 292 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 361 (480)
.|.+..+. +-.. -..+|+.+...|...|++++|...+++..+.. -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887542 1111 14578888889999999999999999876531 1111 3467778888888 99999999
Q ss_pred HHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 011652 362 VFRRMIKLCEA------DADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIPS-MHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 362 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.+++.....+. ...++..+...|.+.|++++|...|++.... +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998872211 1467889999999999999999999988763 22111 2356667777888899999999
Q ss_pred HHHHHHHcCCCCC---HH---HHHHHHHHHHhcCCHHHHHHH
Q 011652 431 LLEDMIEKGIRPS---GE---TFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 431 ~~~~~~~~~~~p~---~~---~~~~l~~~~~~~g~~~~a~~~ 466 (480)
.|++.. . .|+ .. .+..++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 4 343 22 244455555 57887777663
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=5.3e-07 Score=79.58 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCC--H
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV------ETFCIIMRKYARVQKVEEAVYTFNVMQKYGV---TQN--L 166 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 166 (480)
..+...+..+...|++++|.+.++......+... ..+..+...+...|++++|+..++...+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566667777778777777777665544222 1223344445555666666666666554211 111 3
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc---CCCCC----hhhHHHHHHHhhcCCChhHHHHHHHHHHHcC----CCC-C
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPD----SKTYSILLEGWGKDPNLPRAREIFREMVDTG----CNP-D 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 234 (480)
.+++.+...|...|++++|...|++... ..+.+ ..++..+...|.+.|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3555666666666666666666666542 11111 1355555555666666666666655544221 000 0
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEA-LGIVKS 260 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a-~~~~~~ 260 (480)
..+|..+..+|...|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444455555555555555 444443
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=7.8e-08 Score=72.69 Aligned_cols=110 Identities=8% Similarity=0.022 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..+......+.+.|++++|++.|++..+.++.+..+|..+..++...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4555666677777777777777777777666667777777777777777777777777776654 445666667777777
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
..|++++|.+.|++..+..|.+...+..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7777777777777766654555555554433
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=3e-07 Score=81.11 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=113.3
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011652 52 TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVR---AYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128 (480)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 128 (480)
..++.....|+.+.+..+...+.-... .+|... . ..+.. .+...+..+...|++++|..+++.......
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~~---~~~~~~----~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPII---HFYEVL----I-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCTH---HHHHTT----T-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCHH---HHhCCC----C-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 344444456777777777777654432 222211 1 12222 233346667778888888888888776544
Q ss_pred CCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChhhHHHHHHHhhc---
Q 011652 129 LNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVT-QN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD--- 194 (480)
Q Consensus 129 ~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 194 (480)
.++. .+..+...+...|++++|+..++...+.... ++ ..+++.+..+|...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2222 2223555555666778888877777663211 12 23567777777777777777777777653
Q ss_pred C---CCC-ChhhHHHHHHHhhcCCChhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 011652 195 R---FIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDT----GCNPD-IVTYGIMVDVLCKAGR-VDEALGIVKSMD 262 (480)
Q Consensus 195 ~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 262 (480)
. ..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 111 1235566666666666666666666665432 11111 3455555566666663 466666555543
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=3e-07 Score=76.76 Aligned_cols=125 Identities=7% Similarity=-0.044 Sum_probs=64.9
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..+... .+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 344445555555555555555442 33455555555555555555555555555554321 1344455555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 354 GETDEAYRVFRRMIKLCEADA----------------DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
|++++|...++.+.+..+.+. ..+..+..+|...|++++|.+.|+++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555555333322 44555555555555555555555555543
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=1.1e-06 Score=77.59 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC---CC--hhhHH
Q 011652 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADV-----AMYNALIGAFCKANKFKNVYRVLKDMNSKGVA---PN--SRTCN 344 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~--~~~~~ 344 (480)
..+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+.+..+.... +. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3444445555555555555544433211100 11122223334444555555555444432111 00 12344
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIK---LCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
.+...|...|++++|...++++.+ ..+.+ ..++..+..+|...|++++|...+++..
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444444555555554444442 11111 1244444444444444444444444443
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=2.1e-06 Score=75.63 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=115.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCC-CCChh----hHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHHHHH
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSKGV-APNSR----TCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTM 379 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~ 379 (480)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.+.+. ..++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876422 22211 2334556666777888888888888772 1222 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKL----K-RFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS-GETFG 448 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 448 (480)
+..+|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++.++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888899999999998888773 1 11112 247788888899999999999998888742 22222 56778
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhhh
Q 011652 449 KLRKLLIKEGR-EDVLKFLQEKMNLLV 474 (480)
Q Consensus 449 ~l~~~~~~~g~-~~~a~~~~~~~~~l~ 474 (480)
.+..++.+.|+ +++|.+.+++..++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888888994 689998888877653
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=3.8e-06 Score=74.39 Aligned_cols=225 Identities=11% Similarity=0.036 Sum_probs=173.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-Chh
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-K-NVR 183 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~ 183 (480)
..+.+..++|+++++.+...++-+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 334455678999999999999989999999888888888 5999999999999876 66778888877777666 6 889
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP--------RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR----- 250 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 250 (480)
+++++++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 9999999999988889999887766666666666 899999999987654 78888888877777776
Q ss_pred --HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH--------------------HHHHHHHHHHHHCC-----CCC
Q 011652 251 --VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI--------------------EDAVDTFLEMEKNG-----ILA 303 (480)
Q Consensus 251 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~ 303 (480)
++++++.+++..... +-|...|+.+-..+.+.|.. ........++...+ ..+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 689999999888765 66777887766666665543 33344444443322 135
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
+...+..++..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999998754
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=3.2e-07 Score=73.07 Aligned_cols=130 Identities=8% Similarity=-0.045 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+..+...+...|++++|...++...+..+.+..++..+..++...|++++|...+++...... .+...|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 4555556666777777777777777765566677777777777777777777777777766542 256677777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 422 KGIVSDSCVLLEDMIEKGIRPSGETFG--KLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.|++++|...++++.+... .+...+. ..+..+.+.|++++|.+.+++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7777777777777776532 2334442 3333366677777777777766543
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=1.2e-07 Score=75.55 Aligned_cols=128 Identities=10% Similarity=-0.021 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..|..+...+...|++++|...|+......+.+..++..+...+...|++++|+..++...+.. +.+..++..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445555555666666666666666655555555566666666666666666666666555543 334555555555555
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHH--HhhcCCChhHHHHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLE--GWGKDPNLPRAREIFREM 226 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~ 226 (480)
..|++++|...|++.....+.+...+..+.. .+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5556666655555555433333333322222 244445555555544443
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=7.3e-08 Score=84.43 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 011652 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
..+..+...+...|++++|+..|+...+.. +.+...+..+..+|.+.|++++|...+++.....+.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444455555555555555555554432 2344455555555555555555555555555544445555555555555
Q ss_pred cCCChhHHHHHHHHHHH
Q 011652 212 KDPNLPRAREIFREMVD 228 (480)
Q Consensus 212 ~~~~~~~a~~~~~~~~~ 228 (480)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=3.5e-07 Score=76.38 Aligned_cols=128 Identities=10% Similarity=-0.015 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+..+...+...|++++|...|++.. .++..++..+...+...|++++|+..|+...+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34556667778888888888887663 2467788888888888888888888888887764 5567778888888888
Q ss_pred cCChhhHHHHHHHhhcCCCCCh----------------hhHHHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDS----------------KTYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
.|++++|...|++.....+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888776444433 667777788888888888888888877643
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=2e-07 Score=70.07 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|..+...+...|++++|.+.++++....+.+..++..+...+...|++++|..+++.+.+.. +.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45566666666666666666666666665555555666666666666666666666666665543 34455555666666
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
...|++++|...++++....+.+...+..+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666666666666555333344444444333
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=4.5e-08 Score=76.43 Aligned_cols=103 Identities=9% Similarity=-0.037 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+.+.|++++|...|+++....|.++..|..+..+|...|++++|...|+++...... +...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 3466777778888999999999999998888888999999999999999999999999998876533 667888888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
...|++++|...|+++++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999988753 5554
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=4.1e-07 Score=68.65 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+......+.+.|++++|++.|+++.+..+.+...|..+..+|.+.|++++|...+++..+.+.. +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 44555666677777777777777777666667777777777777777777777777777665422 56667777777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 011652 422 KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~ 438 (480)
.|++++|...|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777777777777664
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=1.5e-07 Score=71.71 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4556667777777777777777777777776666666677777777777777777777777766653 345566666666
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
++...|++++|...|++.....+.+...+..+..++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6666777777777766665543334444555544443
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1e-07 Score=77.08 Aligned_cols=121 Identities=10% Similarity=0.124 Sum_probs=87.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--hh
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA-LCKSKNV--RK 184 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~ 184 (480)
...|++++|...++......+.+...|..+...+...|++++|+..|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345677778888877777777777778888888888888888888888777654 4466667777766 6677777 88
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
|...+++.....+.+...+..+...+...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888777755666777777777888888888888888877765
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=2e-07 Score=70.70 Aligned_cols=118 Identities=12% Similarity=0.002 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 44555555666666666666666666655555555566666666666666666666666655543 33455555555556
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
...|++++|...|++.....+.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666655554334444455555544444433
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=3.1e-07 Score=71.65 Aligned_cols=99 Identities=7% Similarity=-0.074 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
...+..+...+.+.|++++|...|++.....+. +...|..+..++...|++++|...|+++.+..|.++..|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 445666667777788888888888887776333 5667777777788888888888888888776677777788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011652 385 CQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~ 404 (480)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888777654
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=8.6e-07 Score=66.44 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|.+.++++.+..+.+..++..+...+...|++++|...++++..... .+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 45555666666667777777777666665555666677777777777777777777777665432 25566666777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
..|++++|...++++.+.. +.+...+..+..++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 7777777777777776543 2234444444444433
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=1.4e-07 Score=78.07 Aligned_cols=155 Identities=11% Similarity=-0.041 Sum_probs=88.6
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCC
Q 011652 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGE 355 (480)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~ 355 (480)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +..| ....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755444332 2224556667777777777777777777776551 1111 23455566666777777
Q ss_pred hHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC
Q 011652 356 TDEAYRVFRRMIKL---CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMHTFSVLINGLCDKG 423 (480)
Q Consensus 356 ~~~a~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 423 (480)
+++|...+++.... .+.+ ...+..+...+...|++++|...+++.... +..+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766651 2212 234566666677777777777777665532 1110 0123455666666677
Q ss_pred ChHHHHHHHHHHH
Q 011652 424 IVSDSCVLLEDMI 436 (480)
Q Consensus 424 ~~~~A~~~~~~~~ 436 (480)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777766666554
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=1.2e-07 Score=83.11 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...+..+...+.+.|++++|...|+......+.+...|..+...+...|++++|+..++...+.. +.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3667888888889999999999999999988888888889999999999999999999999988765 556788888888
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011652 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~ 194 (480)
++...|++++|...|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=9.1e-08 Score=74.69 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=90.7
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 326 RVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 326 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
..++++... .| +...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|+++...+
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 23 345667778888999999999999999998888899999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.. +...+..+..+|...|++++|...|++.++.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 6678888999999999999999999998864
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=2.5e-07 Score=74.78 Aligned_cols=123 Identities=10% Similarity=0.155 Sum_probs=97.2
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCH--H
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM-FCQGGEL--E 391 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 391 (480)
+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+..+.+...+..+..+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3457788889888888877633 2567888888889999999999999999888667788888888888 7788888 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
+|...++++..... .+...+..+...+...|++++|...|+++.+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999998887653 257788888888999999999999999988753
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=6.3e-07 Score=67.85 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+...|++++|...++++....+.+...+..+..++...|++++|.+.+++...... .+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 344555666666777777777777777665566667777777777777777777777777766532 2466677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777777653 2345556666666666554
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=1e-07 Score=74.40 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...|++.....+.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344444444445555555555555444433 334444444444555555555555555554443344444455555555
Q ss_pred hcCCChhHHHHHHHHHHH
Q 011652 211 GKDPNLPRAREIFREMVD 228 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~ 228 (480)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=6.2e-07 Score=68.23 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.++++.+... .+...+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34555555556666666666666666554455566666666666666666666666666655432 24556666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
..|++++|...|++..+... .+...+..+..++.+.|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 66666666666666655321 12334444444444433
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=1.4e-05 Score=70.57 Aligned_cols=184 Identities=6% Similarity=-0.093 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-hHHHHHHH
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE-TDEAYRVF 363 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 363 (480)
++++..++.+..... -+..+|+.-...+.+.+ .++++..++..+.+.... +...|+.-.-.+...|. .+++++.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 444455555444322 24444444444444444 245555555555554332 44444444444444444 35555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQG--------------GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK------- 422 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 422 (480)
+.+.+..+.|...|+.....+... +.++++.+.+.......+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccc
Confidence 555555555555555544444433 3355566666655554422 455554433333333
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhhhC
Q 011652 423 ----GIVSDSCVLLEDMIEKGIRPSG-ETFGKLRK---LLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 423 ----g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+.++++++.++++.+.. |+. ..+..++. +....|..+++..++.++.++++
T Consensus 248 ~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34566777777776543 332 22222221 11235666777777777777664
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=1.3e-06 Score=64.73 Aligned_cols=110 Identities=8% Similarity=-0.075 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
+..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45666677777777777777777777777666667777777777777777777777777776654 44566677777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
...|++++|...+++..+..+.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777777777777777665444554444443
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=5.4e-07 Score=77.13 Aligned_cols=187 Identities=9% Similarity=-0.071 Sum_probs=108.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCC----------------
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCII-------MRKYARVQKVEEAVYTFNVMQKYGVTQN---------------- 165 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 165 (480)
..++.+.|.+.|.++...+|.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56777778888888777777777777766 4555555555555555554443 1111
Q ss_pred ------HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC--Chhh
Q 011652 166 ------LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP--DIVT 237 (480)
Q Consensus 166 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 237 (480)
......+..++...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .| ....
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12334455666677777777777777665433233 55555556666777777777766443321 11 0224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT--SFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55556666666777777776666654322132 224444555666666666666666666654
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=6.8e-07 Score=76.52 Aligned_cols=128 Identities=8% Similarity=-0.094 Sum_probs=73.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcC
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKG 423 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 423 (480)
+...+...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++...|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 44555666777777777666654332222 44455556666677777777776444321 110 234555666666777
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 424 IVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 424 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++++|+..|++.......|. .........++.+.|+.++|...++++...++
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777776664322143 22444555666667777777777776666544
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=1.1e-06 Score=79.16 Aligned_cols=131 Identities=9% Similarity=-0.079 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
+...+..+...|.+.|++++|...|++..+...... ...+..+..++.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777888888888888888888877532211 245555555566666666666666666555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS-CVLLEDM 435 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 435 (480)
.+.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.|+.++| ...++.|
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666655554321 445555555555555555555 2344444
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=6.2e-07 Score=67.73 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|......+.+.|++++|...|++.....+.+...|..+..++...|++++|+..++...+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34455555666666666666666666666655566666666666666666666666666666543 34455566666666
Q ss_pred HccCChhhHHHHHHHhhc
Q 011652 177 CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~ 194 (480)
...|++++|...|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665544
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=6.8e-07 Score=80.43 Aligned_cols=123 Identities=8% Similarity=-0.051 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---------------VETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+...|..+...+.+.|++++|...|++.....+.+ ..+|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666555522 355555555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
. +.+..++..+..+|...|++++|...|++..+..+.+...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 334455555555555555555555555555544344445555555555555555444
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=4.5e-07 Score=70.17 Aligned_cols=98 Identities=13% Similarity=-0.001 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|++....+.. +...+..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3455667778889999999999999999888889999999999999999999999999999886533 667888889999
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 011652 420 CDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~ 438 (480)
...|++++|...|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=3.4e-07 Score=75.70 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc----CCCC--C
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT----GCNP--D 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~ 234 (480)
.++..+...+...|++++|...+++... ..+....++..+...+...|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3344444444444444444444444332 00111233444444444555555555554444321 1000 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
...+..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223344444555555555555555544
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.6e-06 Score=64.22 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+......+.+.|++++|...|++..+..+.+...|..+..+|.+.|++++|...+++..+.+.. +...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 345555666777777777777777777766667777777777777777777777777777765422 5667777777777
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011652 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~ 438 (480)
..|++++|...|+++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777777653
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=4.3e-06 Score=61.81 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|...++......+.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34555566666677777777777776665566666777777777777777777777777666542 25666667777777
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011652 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~ 438 (480)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 777777777777777654
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=1.9e-06 Score=65.04 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPS----MHTFSVL 415 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 415 (480)
.+..+...+.+.|++++|+..|+++.+..|.+...|..+..+|...|++++|.+.+++..+.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777778888888888887776677777888888888888888888888877765321 111 2356677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 449 (480)
..++...|++++|++.|++.+.. .|++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 77788888888888888888763 456655443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=1.2e-06 Score=67.75 Aligned_cols=98 Identities=6% Similarity=-0.044 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...+..+...+.+.|++++|...|+.....++.+...|..+..++...|++++|+..|+...+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344555566666777777777777777777766677777777777777777777777777776654 4456666667777
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011652 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~ 194 (480)
+...|++++|...|+....
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776655
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=1.1e-06 Score=64.46 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ--NLAAFNGLL 173 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll 173 (480)
+...|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555566666677777777777777666665566666666666666677777777666666543 33 455666666
Q ss_pred HHHHcc-CChhhHHHHHHHhhcC
Q 011652 174 SALCKS-KNVRKAQEIFDCMKDR 195 (480)
Q Consensus 174 ~~~~~~-~~~~~a~~~~~~~~~~ 195 (480)
.++... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666553
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.4e-06 Score=64.80 Aligned_cols=114 Identities=11% Similarity=-0.110 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
.+...+..+...+.+.|++++|.+.|++.....+.+ ...+..+...+...|++++|+..++...+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 467777778888888888888888888887766543 6777777778888888888888888777654 445667777
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+..++...|++++|...|++.....+.+...+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77778888888888888877766444455555544443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=8.6e-06 Score=62.23 Aligned_cols=98 Identities=14% Similarity=-0.024 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+...+..+...+...|++++|...|+......+.+...|..+..++...|++++|...+++..+.+.. +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 45566666677777777777777777777766666777777777777777777777777777765422 56677777777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~ 437 (480)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777764
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=0.00022 Score=62.84 Aligned_cols=165 Identities=5% Similarity=-0.031 Sum_probs=94.5
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 109 KIRQYQ-IMWDLVNAMRTKRMLNVETFCIIMRKYARVQK----------VEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 109 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
+.|.++ +|+.+++.+...+|-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344443 56777777776666666666554444433332 456666666666654 446666666555555
Q ss_pred ccC--ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc------
Q 011652 178 KSK--NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN-LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA------ 248 (480)
Q Consensus 178 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 248 (480)
..+ +++++..+++.+.+..+.|..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 555 36677777777766556666666666666666666 46777777777665433 555565544444333
Q ss_pred --------CCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 011652 249 --------GRVDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 249 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
+.++++++.+....... +-|...|+.+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 23455555555555443 3344444433
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=1.8e-06 Score=68.60 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...|..+...+.+.|++++|++.|++.....+.+...|..+...+...|++++|+..|++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455666677777777777777777777777666667777777777777777777777777776654 4456667777777
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011652 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~ 194 (480)
+...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777777665
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=5.7e-06 Score=65.70 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|+..|++..+..+.+...|..+..+|...|++++|...+++..+.... +...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345555556666666666666666666655556666666666666666666666666666655422 4566666666666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011652 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~ 438 (480)
..|++++|...|++.++.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666643
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-06 Score=71.53 Aligned_cols=121 Identities=9% Similarity=-0.123 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV----------------ETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
..+..+...+.+.|++++|...|++.....+.+. .++..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555666666777777777776665544222 455555555556666666666665555543
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
+.+..++..+..++...|++++|...|++.....+.+...+..+..++...++.+++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555666555555555543344444555554444444443333
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1.5e-06 Score=66.63 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+...|++++|...|+......+.+...|..+...+...|++++|+..++...+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3566666667777777777777777777666666666667777777777777777777776666654 445566666666
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011652 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~ 194 (480)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666777766666666554
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=2.3e-06 Score=64.66 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHH
Q 011652 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRPS----GETF 447 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~ 447 (480)
...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|++++|+..+++.++.. ..++ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778899999999999999999999987533 68899999999999999999999999998642 1222 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+..++...|++++|.+.+++..+..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 77888899999999999999998776554
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=5e-06 Score=60.76 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP--SMHTFSVLIN 417 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 417 (480)
...+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 44555666666777777777777777766556666677777777777777777777777766653 12 3566666667
Q ss_pred HHHhc-CChHHHHHHHHHHHHc
Q 011652 418 GLCDK-GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~-g~~~~A~~~~~~~~~~ 438 (480)
++... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.45 E-value=2.4e-06 Score=64.56 Aligned_cols=111 Identities=9% Similarity=0.086 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPS----MHTFSV 414 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 414 (480)
..+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|...++++..... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556666777777788888777777776666777777788888888888888888877765421 112 567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
+..++...|++++|...|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 7888888888888888888887743 455555444433
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=4.6e-06 Score=68.60 Aligned_cols=139 Identities=7% Similarity=-0.087 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
...+..+...+...|++++|...|.+..+.... +. .+... ....-. .. .....|..+..+|
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------~~~~~~---~~------~~~~~~~~la~~~ 98 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------ILLDKK---KN------IEISCNLNLATCY 98 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH--------HHHHHH---HH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh--------hHHHHH---HH------HHHHHHHHHHHHH
Confidence 445556666677777777777777777664221 11 00000 000000 00 0023445555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
...|++++|...+++...... .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++.
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554431 244555555555555555555555555555432 123344444444444444444443
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=3.2e-06 Score=63.19 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+..+...+.+.|++++|...|++.....+.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44455667778888888888888887777777788888888888888888888888877764 44667777777778888
Q ss_pred CChhhHHHHHHHhhcC
Q 011652 180 KNVRKAQEIFDCMKDR 195 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~ 195 (480)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888777653
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=4.2e-06 Score=62.54 Aligned_cols=94 Identities=6% Similarity=-0.059 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+.+.|++++|...++++.+..+.+...|..+..++...|++++|...+++..+.... +...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4445555666777777777777776666666677777777777777777777777776665422 555666666667777
Q ss_pred CChHHHHHHHHHHHH
Q 011652 423 GIVSDSCVLLEDMIE 437 (480)
Q Consensus 423 g~~~~A~~~~~~~~~ 437 (480)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776664
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.6e-05 Score=71.17 Aligned_cols=164 Identities=9% Similarity=0.043 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccH----HHHHHHHHHhhccCCHHHHHHHHHHHHH----CCCCC-CHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTS----FIYSVLVHTYGVENRIEDAVDTFLEMEK----NGILA-DVAM 307 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~ 307 (480)
+..+...|...|++++|.+.+..+...-. .++. .+.+.+...+...|+++.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777777766543210 1111 1233334445556777777777766532 22222 2445
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhC--CC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCC----HH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSK--GV--AP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEAD----AD 375 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~ 375 (480)
+..+...|...|++++|..++.++... +. .+ ....+..++..|...|++++|..+++.... ....+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777778888887777766542 11 11 133566677777778888888877777665 22222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666667777877777766554
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-05 Score=60.35 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 380 (480)
...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+..+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444445555555555544443 222 23334444444444444444444444444333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011652 381 IKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
..++...|++++|...|++...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.4e-05 Score=72.08 Aligned_cols=196 Identities=8% Similarity=-0.056 Sum_probs=111.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCccH----------------HHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCC
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTS----------------FIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILAD 304 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 304 (480)
.+.+.+.|++++|++.+..+.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888765422111 135566777777777777777777654321 1111
Q ss_pred HH----HHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHh---c---
Q 011652 305 VA----MYNALIGAFCKANKFKNVYRVLKDMNS----KGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIK---L--- 369 (480)
Q Consensus 305 ~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--- 369 (480)
.. +.+.+...+...|+.+.+..++..... .+..+. ..++..+...+...|++++|..+++.+.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 112222223345667777777666543 122222 33555666677777777777777776655 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+....++..+++.|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1112345666677777777777777777665431 11111 23445555556666777777776666643
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=7.8e-06 Score=61.67 Aligned_cols=97 Identities=7% Similarity=0.035 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCC----HHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV--TQN----LAAFNG 171 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 171 (480)
..|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++...+... +++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555555566666666666666666555555555555566666666666666666655544321 111 334444
Q ss_pred HHHHHHccCChhhHHHHHHHhhc
Q 011652 172 LLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+..++...|++++|...|+....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1.3e-05 Score=60.40 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSAL 176 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 176 (480)
+...+.+.|++++|...|+.+....+.+. .++..+...+...|++++|+..|+.+.+.. +.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34455556666666666666655444222 455555556666666666666666655543 222 34455555555
Q ss_pred HccCChhhHHHHHHHhhcC
Q 011652 177 CKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~ 195 (480)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5566666666666555543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=3.8e-05 Score=57.84 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=61.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLING 418 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 418 (480)
.+...+...|++++|...|+.+.+..+.+. ..+..+..++...|++++|...++++...... + ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344556666777777777777666444444 56666677777777777777777777664321 2 4556666777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 011652 419 LCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~ 438 (480)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777764
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=1.1e-05 Score=63.44 Aligned_cols=134 Identities=15% Similarity=0.019 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMH 410 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~ 410 (480)
++..+...+...|++++|...+++..+. ..++ ..++..+...+...|++++|.+.+++.... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555555441 0111 135566666677777777777777665532 1110 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRP-SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5666677777778888888877777632 1111 123466677778888888888888888776654
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=5.5e-06 Score=78.29 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=85.8
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
..+.+.|++++|.+.++++.+..+.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34567788888888888888877777888888888888888888888888888876532 67788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKL--LIKEGREDVLKFLQE 468 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 468 (480)
|.+.|+++.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888865321 23334444444 777788888888877
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=9e-06 Score=63.99 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVA-PN----SRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADT 376 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~ 376 (480)
+..+...+...|++++|...+.+..+.... ++ ...+..+...+...|++++|...++..... ...+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555554432100 01 124555556666666666666666665541 1111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777777788888888777766532 1111 134566777788888888888888887764
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=2.8e-06 Score=80.32 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=83.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
...+.+.|++++|.+.|++..+..+.+..+|..+...+.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445567788888888888777777677777888888888888888888887777764 456677777777777888888
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHH--hhcCCChhHHHHHHH
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEG--WGKDPNLPRAREIFR 224 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 224 (480)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888877766444455566655555 666777777777776
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1.6e-05 Score=74.71 Aligned_cols=122 Identities=9% Similarity=-0.049 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---------------VETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
...|..+...+.+.|++++|...|++.....+.+ ..+|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4456666666777777777777777766554422 3445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
+.+...|..+..+|...|++++|...|++..+..+.+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555444344444444444444444444433
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=2.4e-05 Score=71.13 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
..+..+...+.+.|++++|...|++..+. .+.. ..... .....+..+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAE-------DADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777666666542 0000 00000 01111122344567888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
+.|++++|.+.++++.+... .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988887653 267788888888899999999999999888754 2356666677777777777666654
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=2.4e-05 Score=61.89 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.+...|..+..+|.+.|++++|...+++..+.+. .+...|..+..+|...|++++|...|++.++.
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3446777778888888888888888888777653 26677777888888888888888888888764
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=1.2e-05 Score=73.23 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..|..+...+.+.|++++|+..|++..+... ........ +...+.. +.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-----------~~~~~~~~-------~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-----------GSRAAAED-------ADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHHHSCH-------HHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-----------cCccccCh-------HHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456666677777777777777776654100 00000000 0000010 223445555666666
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+.|++++|...+++..+..+.+...|..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554555666666666666666666666666666654211 3444555555555555555544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=4.9e-06 Score=61.72 Aligned_cols=84 Identities=7% Similarity=-0.125 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011652 110 IRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (480)
.|++++|+..|++....+ +.+..++..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555442 2334444555555555555555555555555443 333444555555555555555555
Q ss_pred HHHHHhhc
Q 011652 187 EIFDCMKD 194 (480)
Q Consensus 187 ~~~~~~~~ 194 (480)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=3.5e-05 Score=72.43 Aligned_cols=131 Identities=9% Similarity=-0.090 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
...+..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666677777777777777777766422211 3567777888888888888888888888877
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV-LLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 436 (480)
+.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.|+.+++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888888876422 45667777777777777776653 444443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=2.4e-05 Score=61.84 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTK------------------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
...+......+.+.|++++|+..|+..... .+.+..+|..+..++.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677777888888888888776654 22223445555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+.. +.+...|..+..+|...|++++|...|++...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 543 33444555555555555555555555555544
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00014 Score=70.11 Aligned_cols=168 Identities=6% Similarity=-0.030 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--Ch
Q 011652 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQK----------VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK--NV 182 (480)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~ 182 (480)
+|.+.++.+...++.+..+|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+.+ ++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccH
Confidence 34444444444444444444444333333333 444444444444433 333444444444444444 33
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-------------
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA------------- 248 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 248 (480)
+++.+.++++.+..+.+..+|+.-.-.+.+.| .++++++.++++++..+. +...|+.....+.+.
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccccc
Confidence 44444444444433444444444444444444 444444444444443222 333443333333221
Q ss_pred -CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC
Q 011652 249 -GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285 (480)
Q Consensus 249 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (480)
+.++++++.+++..... +-+...|..+-..+...++
T Consensus 205 ~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666665543 4455556555555555554
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=9.9e-06 Score=60.04 Aligned_cols=87 Identities=18% Similarity=0.043 Sum_probs=70.2
Q ss_pred hCCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 352 GRGETDEAYRVFRRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
..|++++|+..|+++.+. .+.+...+..+..+|...|++++|...+++..+.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 458889999999999874 3556678889999999999999999999999887533 678888899999999999999
Q ss_pred HHHHHHHHHcC
Q 011652 429 CVLLEDMIEKG 439 (480)
Q Consensus 429 ~~~~~~~~~~~ 439 (480)
...+++.++..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988653
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=7.1e-06 Score=59.98 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC------HHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN------LAAF 169 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 169 (480)
+...|..+...+.+.|++++|.+.|++.....+.+..++..+..++...|++++|++.++...+.. +.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 456777888888888999999999998888877788888888888888999999999988888754 223 4555
Q ss_pred HHHHHHHHccCChhhHHHHHHHh
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~ 192 (480)
..+..++...|+.+.|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 56666666666666665554443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=6.4e-05 Score=57.98 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK-----GIRPS-GETF----GKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|...+++..++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5555555555566666666655555543 01333 2334 455556666666666666666665554
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.6e-05 Score=71.51 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+.+.|++++|...|++.....+.+.. +...++.+++...+ . ..+|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 345666777788889999999999887765442210 01111112211111 0 12344455555
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
.+.|++++|...+++.....+.+...|..+..+|...|++++|...|++..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544344455555555555555555555555555543
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.5e-05 Score=71.73 Aligned_cols=150 Identities=7% Similarity=-0.058 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
...+..+...+.+.|++++|...|.+.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 445666666777788888888888877664 233221 112222333222211 13667777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-HhcCCHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLL-IKEGREDV 462 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~~~~ 462 (480)
.+.|++++|...+++..+... .+...|..+..+|...|++++|...|+++++. .|+. ..+..+.... ...+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887776542 26677777888888888888888888877653 3333 3333343332 23455677
Q ss_pred HHHHHHHHHhhhC
Q 011652 463 LKFLQEKMNLLVK 475 (480)
Q Consensus 463 a~~~~~~~~~l~~ 475 (480)
+...++++.+..+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7777777766554
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00037 Score=67.09 Aligned_cols=170 Identities=9% Similarity=-0.019 Sum_probs=141.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC--C
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ----------YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ--K 146 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~ 146 (480)
+|++.++.+...++ -+..+|+..-..+.+.|+ ++++.+.++.+.+.++.+..+|..-...+.+.+ +
T Consensus 47 eal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 78999988877654 578889888888877777 999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC------------
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD------------ 213 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 213 (480)
++++++.++++.+.. +.+..+|+.-..++.+.| .++++.+.++++.+..+.+...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 799999999999986 668889998888888888 899999999999988888999998877776552
Q ss_pred --CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 214 --PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 214 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+.++++++.+++.....+. |...|.-.-..+.+.++.+
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4578999999998876433 6777877777776666643
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=9.6e-05 Score=57.01 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-H
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEA-------D-----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK-----RFIPS-M 409 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~-------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-~ 409 (480)
..+.+.|++++|+..|++..+..+. + ...|..+..++.+.|++++|+..+++..+. .+.|+ .
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 3344445555555555554442111 2 237888888888888988888888888875 11344 4
Q ss_pred HHH----HHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHHHH
Q 011652 410 HTF----SVLINGLCDKGIVSDSCVLLEDMIEK-----GIRPSGETFGKL 450 (480)
Q Consensus 410 ~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 450 (480)
..| .....++...|++++|+..|++.++. |+.+........
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 677 88889999999999999999998753 455554444333
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00047 Score=52.53 Aligned_cols=111 Identities=8% Similarity=0.037 Sum_probs=79.1
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAF 394 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 394 (480)
+++++|...|++..+.|.. .. . +...|...+..++|.++|++..+. .++..+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4677788888887777522 22 2 556666667777788888777763 566777777777776 67788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 439 (480)
+.|++..+.| +...+..+...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888877765 56677777777777 677888888888777765
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.93 E-value=6.9e-05 Score=55.12 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|...++++.+..+.+...+..+...|...|++++|...+++...... .+...|..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667776666666777777788888888888888888887776542 2566777777778888888888888877765
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=8.6e-05 Score=69.76 Aligned_cols=61 Identities=7% Similarity=-0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKL-----KRFI-P-SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+++.|...|...|++++|..++++..+ .|.. | ...+++.|...|...|++++|..++++++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555555555555555444332 1110 1 12344455555555555555555555444
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=4e-05 Score=58.96 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=69.5
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL----------EKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
+.+.+++|.+.++...+..|.+...|..+..++...+++ ++|+..|++..+.+.. +...|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 445567777777777776677777777777777766654 4788888877776533 56677778877776
Q ss_pred cC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 422 KG-----------IVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 422 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
.| ++++|+..|+++++. .|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 54 788888888888874 5666655554443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=8.5e-05 Score=69.79 Aligned_cols=124 Identities=14% Similarity=0.022 Sum_probs=86.3
Q ss_pred HHHHcCCHhHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHh----c----CCCCHHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSK---GVAP----NSRTCNIILNGLIGRGETDEAYRVFRRMIK----L----CEADADTYT 378 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~ 378 (480)
.+...|++++|..++++..+. -+.| ...+++.+..+|...|++++|+.++++... . .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888776542 1112 234677888888888888888888888765 1 122345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKL-----KRFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|...|...|++++|..++++..+ .|.. |+ ..+...+..++...+.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999888887663 2421 11 23455566677778888888888888875
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.001 Score=50.65 Aligned_cols=110 Identities=9% Similarity=0.047 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCChHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAY 360 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 360 (480)
++++|.+.|++..+.|. +... +...|...+.+++|...|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555444431 1211 3333334444444555555444432 33334444444444 44455555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011652 361 RVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 404 (480)
++|++..+. .++..+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555544442 334444444444444 445555555555444443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=0.00023 Score=49.45 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345666777777778888888888887777666667777777777777888888888877777654 3455556555555
Q ss_pred HHc
Q 011652 176 LCK 178 (480)
Q Consensus 176 ~~~ 178 (480)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.0001 Score=54.21 Aligned_cols=78 Identities=6% Similarity=-0.093 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011652 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
|+..|+.+....+ .+...|..+...+.+.|++++|...|++.....+.+...|..+...+...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444544433322 34555555555555555555555555555555554455555555555555555555555555443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00016 Score=52.45 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+..+...+...|++++|...+++..+..+.+...+..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444455555555555554444444444455555555555555555555554444
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00047 Score=47.78 Aligned_cols=78 Identities=10% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
.+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 444444455555555555555555444321 134444455555555555555555555554432 123334444444443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00043 Score=49.26 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+.+...+..+..+|...|++++|...|+++.+.+.. +...|..+..+|...|++++|...|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666777777777777777777776665422 455666677777777777777777776654
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=0.00023 Score=54.74 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=39.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV----------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+.+.+++|.+.++...+.+|.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666655543 35555555555543 3344555555555554
Q ss_pred c
Q 011652 179 S 179 (480)
Q Consensus 179 ~ 179 (480)
.
T Consensus 93 l 93 (158)
T 1zu2_A 93 F 93 (158)
T ss_dssp H
T ss_pred h
Confidence 4
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.46 E-value=0.00073 Score=48.04 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
.++..|..+...+.+.|++++|+..|++..+.++.+..+|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36667777777777777788888777777777776666777777777777777777777776654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0072 Score=53.57 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHH--HcC---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHh----CCCh-HHH---HHHHHHHH
Q 011652 302 LADVAMYNALIGAFC--KAN---KFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIG----RGET-DEA---YRVFRRMI 367 (480)
Q Consensus 302 ~~~~~~~~~li~~~~--~~~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~~~~-~~a---~~~~~~~~ 367 (480)
+.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...+..+..++.. .+.. ... ...++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 446667777776543 333 357888889888886 344 3344444444331 1111 111 11222211
Q ss_pred --hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 368 --KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 368 --~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
...+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1446788888888777777789999999988888876 67777777788888889999999888888874 56676
Q ss_pred HHH
Q 011652 446 TFG 448 (480)
Q Consensus 446 ~~~ 448 (480)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.21 E-value=0.0013 Score=46.37 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=33.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMH-TFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...+...|++++|.+.++++.+... .+.. .+..+..+|...|++++|...|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666655432 1444 5666666666666666666666666654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.034 Score=49.30 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=83.8
Q ss_pred CccHHHHHHHHHHhh--ccC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---cC--CHhHH---HHHHHHHH
Q 011652 267 RPTSFIYSVLVHTYG--VEN---RIEDAVDTFLEMEKNGILAD-VAMYNALIGAFCK---AN--KFKNV---YRVLKDMN 332 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~~--~~~~a---~~~~~~~~ 332 (480)
+.+...|...+.+.. ..+ +..+|..+|++..+. .|+ ...|..+..+|.- .+ ..... ...+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 455666666665543 222 346788888887765 343 3444444433321 11 11111 11122111
Q ss_pred hC-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011652 333 SK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 333 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 411 (480)
.. ..+.+...+..+...+...|++++|...++++.... |+...|..+...+.-.|++++|.+.+++....+ |...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcCh
Confidence 11 123356666666666666788888888888888743 677777777788888888888888888877754 66666
Q ss_pred HH
Q 011652 412 FS 413 (480)
Q Consensus 412 ~~ 413 (480)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.12 E-value=0.00083 Score=47.50 Aligned_cols=58 Identities=7% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
...+.+.|++++|...|+......+.+.. .+..+...+...|++++|++.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44556677777777777777776666666 77777777777777777777777776654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.0023 Score=59.07 Aligned_cols=86 Identities=9% Similarity=-0.088 Sum_probs=60.7
Q ss_pred hCCChHHHHHHHHHHHh----cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHH
Q 011652 352 GRGETDEAYRVFRRMIK----LCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRF-IPS-MHTFSVLI 416 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~ 416 (480)
..|++++|+.++++..+ ...| ...+++.|..+|...|++++|..+++++.. .|. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677888888777665 1111 235678888888888888888888887663 231 122 35678888
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011652 417 NGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~ 437 (480)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888998888888888764
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.0079 Score=61.05 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=67.5
Q ss_pred HhcCCHHHHHH-HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 246 CKAGRVDEALG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 246 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
...+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.-. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 44566666655 442111 01122555666666777777665542111 012234556777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
.++.+.+ .+...|..+...+.+.++++.|+++|..+.. |..+...|...|+.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7665332 2556777777777777777777777776643 333344444455555544444444433
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.92 E-value=0.069 Score=39.10 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
+...+...+..+...|..+.-.+++..+....+|++...-.+..+|.+.|+..+|.+++.++.+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33445555556666666666666666655555666666666666666666666666666666666543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0064 Score=56.17 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=51.8
Q ss_pred HHhCCChHHHHHHHHHHHhc----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKL----CEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRF-IPS-MHTFSV 414 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~ 414 (480)
+.+.|++++|+.++++..+. ..+ ...+++.+...|...|++++|..+++++.. .|. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666665541 111 234566667777777777777777666543 121 122 245667
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
|...|...|++++|..+++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777777777777777665
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.044 Score=55.56 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=87.1
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 107 LAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 107 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. .. .-.......|+++.|
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHH
Confidence 345677777766 44211 1133346677777777888877765421 11 112334556888888
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....|
T Consensus 672 ~~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 672 RDLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77765543 667788888888888888888888877653 3444555555666666555544444433
Q ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
. ++....+|.+.|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 22223334444555555544433
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.67 E-value=0.0094 Score=55.03 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=69.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCC---CCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh----cC----CCCHHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKG---VAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIK----LC----EADADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~ 376 (480)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++.. .. +....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998887641 2222 34678888899999999999999998876 11 223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999987764
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.66 E-value=0.018 Score=39.93 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 95 HSVRAYHSMIESLAKIRQ---YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
.++..+..+..++...++ .++|..++++....++.+..+...+...+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566777777776654443 6778888888877777777777777777788888888888888777654
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.66 E-value=0.016 Score=40.20 Aligned_cols=67 Identities=4% Similarity=-0.097 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 371 EADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+.++..+..+..++...++ .++|..++++....+.. +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555543333 45555555555554422 4445555555555555555555555555543
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0054 Score=56.57 Aligned_cols=85 Identities=8% Similarity=-0.036 Sum_probs=62.5
Q ss_pred cCCHhHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh----c----CCCCHHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSK---GVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIK----L----CEADADTYTMMIK 382 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~l~~ 382 (480)
.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++.. . .+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56788888888776552 12222 35678888888889999999988888776 1 1223456888899
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 011652 383 MFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~ 402 (480)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998887754
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.64 E-value=0.013 Score=44.59 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 011652 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIP--SMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
....+.+-|.+.....+++..+...+..++++.+ +++++..+++...+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666655678888888888888887 5668888888887754 23 3455666777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 011652 430 VLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l 450 (480)
++++.+++. .|+..--..+
T Consensus 92 ~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHH
Confidence 999888874 5554433333
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.02 Score=43.48 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG---ETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
...+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..+++...+...| +...+-.+.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555555555444 45555555666666666 445666666666664322 34555556666667777777777
Q ss_pred HHHHHHhCC
Q 011652 396 VWKYMKLKR 404 (480)
Q Consensus 396 ~~~~~~~~~ 404 (480)
.++.+.+..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777766643
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.56 E-value=0.037 Score=39.32 Aligned_cols=67 Identities=4% Similarity=-0.040 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
.++..+..+...+.+.|++..|...|+...+. +.....++..+..++.+.|+++.|...++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 46667777788888888888888888776543 22556677777777788888888888887777653
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.15 Score=39.82 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
.+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34456677777777776655 2566777777777777777777777766553 233444555566665
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
...++-+..... .-++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~-----g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTR-----EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-----ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444433321 1244444555556666666666543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.13 Score=40.10 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.++..
T Consensus 15 AL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 345566666666666553 556666666666666666666666665542 334444455556665555
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++-+.....| -++....++...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444333 133334444555666666666644
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.40 E-value=0.38 Score=40.98 Aligned_cols=84 Identities=7% Similarity=0.018 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc-CCHH
Q 011652 217 PRAREIFREMVDTGCNPD---IVTYGIMVDVLCK-----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE-NRIE 287 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 287 (480)
..|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++....+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555556666553 344 4456666666666 377777777777777654222355566666666663 7777
Q ss_pred HHHHHHHHHHHCCCC
Q 011652 288 DAVDTFLEMEKNGIL 302 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~ 302 (480)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777665544
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.36 E-value=0.033 Score=39.59 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
.+..-+..+...+...|++..|...++.+.+.. -.+....+..+..++.+.|+++.|..+++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 456667788999999999999999999877531 1235678899999999999999999999999874 4544
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.34 E-value=0.055 Score=45.98 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHH
Q 011652 356 TDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQG-----GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSD 427 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 427 (480)
...|...++++.+..+. +...|..+...|.+. |+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666666653333 355777888888774 88888888888888765322367777777877774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 428 SCVLLEDMIEKGIR--PSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 428 A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
+.+.+++.+..... |+....+. +.-++|..+++++..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 88888888876665 55433332 223555555555544
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.94 E-value=0.18 Score=37.90 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 388 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
+++++|.++|+.+....-.- ...|......-.++|+...|.+++.+.+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665432222 5555555555566677777777777766655443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.71 E-value=0.2 Score=37.54 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
++.++|.++|+.+++.+-.- ...|......-.+.|+...|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45556666666555432121 444444444455566666666666666555433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.56 E-value=0.082 Score=38.57 Aligned_cols=88 Identities=6% Similarity=-0.074 Sum_probs=55.4
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChH
Q 011652 351 IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK---AFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~ 426 (480)
........+.+-+........++..+-..+..++++..+... ++.+++.+...+.+ -.....-.+.-++.+.|+++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 333445555555655555445777777777777777776555 77777777665311 12234445566777888888
Q ss_pred HHHHHHHHHHHc
Q 011652 427 DSCVLLEDMIEK 438 (480)
Q Consensus 427 ~A~~~~~~~~~~ 438 (480)
+|.++++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.54 E-value=2.4 Score=42.84 Aligned_cols=271 Identities=9% Similarity=-0.013 Sum_probs=149.3
Q ss_pred HHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC--C-----CChhhHHHH--HH
Q 011652 176 LCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC--N-----PDIVTYGIM--VD 243 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l--~~ 243 (480)
....|+.+++..+++..... ..+....-..+.-+....|..+++..++.......- . +....-..+ .-
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45667777777777665431 111222333344455566666678887777664311 0 001111122 22
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcC
Q 011652 244 VLCKAGRVDEALGIVKSMDSTVCRPTS--FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA--FCKAN 319 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~ 319 (480)
+|.-.++ +++.+.+..+.... .+.. ..-.++...+.-.|+.+....++..+.+. .+......+..+ +...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 2233334 45555555555432 1111 11223344455678888888888777653 233344434443 44678
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 320 KFKNVYRVLKDMNSKGVAPNSRTC--NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
+.+.+..+++.+... ..|....- ..+..+|+..|+.....+++..+.+....+..-...+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888888764 12222222 233456778889888888998888744444444444555555677777778888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIV-SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
..+.+.+ .|.+..-..+.-+....|.. .++...+..+.. .++..+-...+.++..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 7666654 34444444444444545543 578888888864 3456555555555544
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.14 E-value=6.8e-05 Score=67.77 Aligned_cols=266 Identities=12% Similarity=0.109 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
.+..|..|..+....+++.+|++.|-+ ..|+..|..++.+..+.|.+++-...+....+. ..++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 444566666666666666665544321 123344556666666666666666655544432 2244445566666
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
|++.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++...|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 66666655433322 124555555666666666666666555543322 23344455566666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.-. ......++..|...|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 433221 235667888888888888887766554444432 223444666788888899888888888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIP------SMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
-....-+|+.|.-.|++- ++++..+-++..-.+ +++- ....|..++-.|++-.+++.|..
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 667888888888888876 555555555443222 2221 23457777777777777776643
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.07 E-value=0.69 Score=33.98 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=68.8
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHH
Q 011652 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (480)
.-.|..++..++..+..+. .+..-+|-+|--....-+-+...++++.+-.-+.. ...|+......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHHH
Confidence 3456677777777666653 23344444443333344444455555554432211 11233333333
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
.+-.+- .+.......++.....|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222221 13334444555556666666666666664332 245555555666666666666666666666655554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.89 E-value=0.32 Score=35.43 Aligned_cols=68 Identities=16% Similarity=-0.030 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 407 PSMHTFSVLINGLCDKGIVSD---SCVLLEDMIEKGIRP--SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
|+..+-..+..++.++....+ ++.++++....+ .| .....-.+.-++.+.|+++.|.+.++.+.+..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 344444445555555444333 444454444332 11 112223344445555555555555555544433
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.05 E-value=0.00012 Score=66.28 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=136.5
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (480)
.+.+|..|..+....+.+.+|++-|-+. -|...|..++.+..+.|.+++-.+.+...++.. .++..=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4566777777777777776666544222 155566777777777777777777776666542 23344456777
Q ss_pred HhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--------------------CCCC
Q 011652 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--------------------GVAP 338 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p 338 (480)
+|++.++..+..+.+ -.|+..-...+.+-|...|.++.|.-+|..+..- ...-
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777665433322 1244444555566666666666665555433210 1123
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
++.||..+-.+|...+.+.-|...--.+.- .+.-...++..|-..|.+++-..+++.-.... .....+|+.|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 678999999999999998887665444432 22233456778889999999999999877432 2477899999998
Q ss_pred HHhcCChHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLED 434 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~ 434 (480)
|++- ++++..+.++.
T Consensus 273 YsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 273 YSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHSS-CTTHHHHHHTT
T ss_pred HHhc-CHHHHHHHHHH
Confidence 8875 35555555543
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.83 E-value=0.27 Score=33.80 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.=+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33555556666666667777777777777777777777777777776644444444555443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.78 E-value=0.3 Score=44.30 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=25.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.+...|+++++...+..+....|.+...|..+|.++.+.|+..+|++.|+.+
T Consensus 180 ~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 180 AEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555554444444444444445555555555555555555544443
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.42 E-value=1.2 Score=32.69 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 369 LCEADADTYTMMIKMFCQGGEL---EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
+..|++.+--.+..++++..+. .+++.+++.+...+..-.-..+-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4456666666677777776543 45677777766554211234555566677777888888887777776 345543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.98 E-value=1.4 Score=43.43 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=41.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
-|...|+++-|+++-++...-.|.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567888888888888877777778888888888888888888888877663
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.91 E-value=1 Score=31.00 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.=++.+-++.+...++.|++....+.+++|.+.+++..|.++++.+...+.....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3455555666666666777777777777777777777777777766654444444454443
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.67 E-value=10 Score=39.93 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=35.5
Q ss_pred HHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
.++..+...+..+.+.++..-.. .++.....+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45666677777777766554433 24555566777888888888888888764
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.23 E-value=0.71 Score=41.87 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
++..+...|++++|...+..+..... -+...|..++.++.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555544444443321 24444555555555555555555544443
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.94 E-value=2.9 Score=31.06 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 371 EADADTYTMMIKMFCQGGEL---EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
.++..+--.+..++++..+. .++..+++.+...+..-.-...-.+.-++.+.|++++|.++.+.+++. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 57777777777778776654 467777777776442213344445666788888888888888888874 45443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.74 E-value=0.54 Score=46.31 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCHHHH-HHHHHHHHHhC-CHHHHHHHHHHHHhc------CCCC-CH----
Q 011652 101 HSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETF-CIIMRKYARVQ-KVEEAVYTFNVMQKY------GVTQ-NL---- 166 (480)
Q Consensus 101 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~---- 166 (480)
..++..+...++ ++.|.++|+++....+.....+ ..++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444555555 4778888888877765222222 23333332222 222344444433321 1111 11
Q ss_pred ------HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 167 ------AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 167 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
...+.-...+...|+++-|+++-++...-.|.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344556788888888888877766667788888888888888888888887776
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.58 E-value=8.3 Score=35.55 Aligned_cols=253 Identities=10% Similarity=0.084 Sum_probs=139.3
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH----hhccC
Q 011652 214 PNLPRAREIFREMVDT-----GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT----YGVEN 284 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g 284 (480)
|+++.|++.+..+.+. ....+......++..|...|+++...+.+..+.+..... ......++.. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 7788888877666542 123345556778888999999998888777665432122 2222333332 22233
Q ss_pred CHHHHH--HHHHHHH---HCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHH
Q 011652 285 RIEDAV--DTFLEME---KNGILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPN---SRTCNIILNGLI 351 (480)
Q Consensus 285 ~~~~a~--~~~~~~~---~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~ 351 (480)
..+... .+.+... +..+... ......|...|...|++.+|..++..+... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 1111111 1112221 233456677888899999999999888643 22211 235566677888
Q ss_pred hCCChHHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHH
Q 011652 352 GRGETDEAYRVFRRMIK---LCEADA----DTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSV----LINGL 419 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~----l~~~~ 419 (480)
..+++..|..+++++.. ...+++ ..+...+..+...+++.+|.+.|.++.+. ...-+...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 88999999988888754 233332 34566777777888888888887776542 11113222222 22222
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG--REDVLKFLQ 467 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~ 467 (480)
.-.+...+-..++........-++...+..++++|.... +++.+.+.+
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 233333334444444443333344556667777776532 344444433
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.55 E-value=3.1 Score=43.85 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=91.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-------------------
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------------------- 371 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 371 (480)
++..+...+..+.+..+..-.. .++..--.+..++...|++++|.++|.+...+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 4445555666665554433221 1333334455667777888888888876543211
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 372 ----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 372 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
.-..-|..++..+.+.+.++.+.++-+...+....-+. ..|..++.++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 11234667778888888888888887776653222121 25778888888889999998888777665443
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 011652 444 GETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a 463 (480)
...+..++..++..|..+.-
T Consensus 971 ~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhCCChhhh
Confidence 56677777777777665443
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.42 E-value=0.75 Score=33.57 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+-++.+...++.|++.+..+.+.+|.+.+|+..|.++|+-++.+..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 444555555556666777777777777777777777777777666544444444554443
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.35 E-value=2.3 Score=31.08 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.-+..+-++.+...++.|++......+++|.+.+++..|.++|+.+.....+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33455556666666777777777777777777777777777777777654444445555443
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.99 E-value=18 Score=36.69 Aligned_cols=268 Identities=13% Similarity=0.003 Sum_probs=148.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHhhcCCC--------CChhhHHHHHH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVRKAQEIFDCMKDRFI--------PDSKTYSILLE 208 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~ 208 (480)
-+....|+.++++.++......+-..+.. .-..+.-+....|...++..++........ +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888888887765421112322 233333445566666667776665443111 11222233333
Q ss_pred HhhcCCC-hhHHHHHHHHHHHcCCCCChhh--HH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH--hh
Q 011652 209 GWGKDPN-LPRAREIFREMVDTGCNPDIVT--YG--IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT--YG 281 (480)
Q Consensus 209 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 281 (480)
+++..|. -+++.+.+..+.... +... .. .+...+.-.|+.+-...++..+.... +..+...+.-+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 4443443 245666666666531 2211 11 23334556788777788887776532 33333333333 44
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChH
Q 011652 282 VENRIEDAVDTFLEMEKNGILADVA-MYN---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 357 (480)
..|+.+.+..+++.+... .+.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 678889888888888764 2322 232 23346778899888888999888752 222333333333445567777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL-EKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
.+.++++.+.+...|...--..+.-+....|+. .++..++..+... ++..+-..-+.++
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 777777766664445555445555555556554 5778888888642 4554444434333
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.85 E-value=11 Score=32.63 Aligned_cols=111 Identities=8% Similarity=0.101 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT----FNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+.+.+.+++++......++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5556667777778888887776542 2334455665555443 455566677777777777776
Q ss_pred HHHccCChh-hHHHHHHHhhc-------CCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 011652 175 ALCKSKNVR-KAQEIFDCMKD-------RFIPDSKTYSILLEGWGKDPNLPRAREIF 223 (480)
Q Consensus 175 ~~~~~~~~~-~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (480)
.+.....-+ .-.++++.+.. ...-++.....+...|.+.+++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 665533211 11222222221 11124555566666666666666655544
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.54 E-value=12 Score=32.69 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhcCCCCCHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT----FNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 173 (480)
.+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++ ++-+.+.+++++......++
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35666777778888888888876542 2334455665554444 35556667777777766676
Q ss_pred HHHHccC
Q 011652 174 SALCKSK 180 (480)
Q Consensus 174 ~~~~~~~ 180 (480)
..+....
T Consensus 102 ~L~~~~~ 108 (336)
T 3lpz_A 102 GCLRLFQ 108 (336)
T ss_dssp HHHTTSC
T ss_pred HHHHhCC
Confidence 6665544
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.79 E-value=5.8 Score=30.40 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKG-VAPNS-------RTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
++.+...|.++.|+-+...+.... ..|+. .++..+..++...+++..|...|+++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455555555555554433210 11111 1344455556666666666666666543
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.61 E-value=5.1 Score=33.57 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=79.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCh
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 425 (480)
....+.|.+++++.....-++..|.|...-..+++.+|-.|++++|.+-++...+.... |...+|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~---- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA---- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH----
Confidence 34667899999999999988888999999999999999999999999999888775421 223345555543211
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhh
Q 011652 426 SDSCVLLEDMIEKG-----IRPSGETFGKLRKLLI--KEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 426 ~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~l~ 474 (480)
=.++..-+ +.....-...++.+.. ..|+.++|.++-.++.+..
T Consensus 81 ------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 81 ------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 11111111 1122333445555554 4699999999998887764
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.33 E-value=25 Score=33.97 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=72.7
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNII----LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
.+.+.|...+........ .+......+ .......+...++...+..... ...+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 377889999988865432 233332222 2233334435566666666443 3344444555555666789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
..|+.|...... .....--+..++...|+.++|..+|+++..
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999888653211 333344456677888999999999998864
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.78 E-value=24 Score=32.46 Aligned_cols=254 Identities=8% Similarity=0.067 Sum_probs=148.6
Q ss_pred cCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH-cCCCCChhhHHHHHHH----HHh
Q 011652 179 SKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDV----LCK 247 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~----~~~ 247 (480)
.|+++.|.+.+-.+.+ ...........++..+...++++...+.+.-+.+ +|..+.. ...+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3678888887766653 2334556678889999999999999888876653 3333222 2233332 222
Q ss_pred cCCHHH--HHHHHHHhhh--CC-CCc---cHHHHHHHHHHhhccCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHH
Q 011652 248 AGRVDE--ALGIVKSMDS--TV-CRP---TSFIYSVLVHTYGVENRIEDAVDTFLEMEK--NGILAD---VAMYNALIGA 314 (480)
Q Consensus 248 ~g~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~ 314 (480)
....+. -..+.+.+.. .| +.. .......|...+...|++.+|.+++..+.. .|.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333222 2222222211 11 111 223346688899999999999999999863 232222 3466777888
Q ss_pred HHHcCCHhHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHH----HHHH
Q 011652 315 FCKANKFKNVYRVLKDMNS----KGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYT----MMIK 382 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~----~l~~ 382 (480)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.. ....+...+. .++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 9999999999999998743 222222 23456667777888999999988888765 2223333222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK--GIVSDSCVLLED 434 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 434 (480)
+..-.+....-..++.........++...|..++.+|... .++..+.+.|+.
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2222222222233333332222224677888888888654 345555555543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.92 E-value=8 Score=32.42 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=42.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..+.+.|+++++++....-.+..|.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566777888888887777777777777777888888888888888777777664
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.85 E-value=11 Score=27.68 Aligned_cols=27 Identities=11% Similarity=-0.094 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+-.|.-++.+.|++++|.+..+.+.+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444444444555555554444444
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.84 E-value=24 Score=31.73 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=44.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCccHHHHH---
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPD-----IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV--CRPTSFIYS--- 274 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~--- 274 (480)
.++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....... +.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355566666666666666666553211111 1223344455666667666666665553311 112222111
Q ss_pred -HHHHHhh-ccCCHHHHHHHHHHH
Q 011652 275 -VLVHTYG-VENRIEDAVDTFLEM 296 (480)
Q Consensus 275 -~l~~~~~-~~g~~~~a~~~~~~~ 296 (480)
.-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122334 566677666665554
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.93 E-value=23 Score=30.87 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 303 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
-++.....+...|.+.+++.+|...|- .|..+....+..++..+...+...++--++-+ .+-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR--------------aVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCAR--------------AVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH--------------HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHH--------------HHH
Confidence 356666677778888888888877762 23333335665555555444433222222211 223
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~ 401 (480)
.|...+++..|..+++...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3445667777777665544
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.52 E-value=14 Score=27.44 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=40.8
Q ss_pred CCChhhHHHHHHHHHhCCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 337 APNSRTCNIILNGLIGRGET---DEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
.|+..+--.+..++++..+. .+++.+++.+.+..+ ......-.|.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45555555555556665543 356666666665333 233455556667777777777777777777654
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.37 E-value=16 Score=27.98 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=46.1
Q ss_pred CCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 335 GVAPNS--RTCNIILNGLIGRGETDEAYRVFRRMIK--LCEAD-------ADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 335 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
|..|.. ..+-.-++.+...+.++.|+-+.+.+.. ...++ ..++..+.+++...|++..|...|++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444433 3444456677888999999988887665 33343 2366778899999999999999999865
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.35 E-value=14 Score=33.92 Aligned_cols=96 Identities=9% Similarity=-0.098 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHHH---
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTM--- 379 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~--- 379 (480)
+...+...|.+.|+++.|.+.+.++......+ -...+...++.+...+++..+...+.++.. ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777888888888888888877642222 234566677777777888888888777765 22233332222
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHh
Q 011652 380 -MIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 380 -l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 12222345677777766665543
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.05 E-value=18 Score=33.16 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKY--GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
++..+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666666666666666666543 2222234555566666666666666666666543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.69 E-value=19 Score=28.66 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 011652 111 RQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 164 (480)
+....+.++|..|...++ .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666555 455556666666666666666666666666655555
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.40 E-value=14 Score=31.08 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=8.5
Q ss_pred HHHHHhcCChhHHHHHHH
Q 011652 104 IESLAKIRQYQIMWDLVN 121 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~ 121 (480)
+...++.|+++.+..+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334445555554444443
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.21 E-value=29 Score=26.16 Aligned_cols=72 Identities=6% Similarity=0.016 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
.++.|+.-...-+...-. .+++.++|..|..+++ .....|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 63 ~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 63 KYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344455544433332222 2347788888887776 56667777777888888888888888887777666643
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.07 E-value=77 Score=30.58 Aligned_cols=114 Identities=7% Similarity=0.044 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhhhCCCCccHHH----HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFI----YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
+.+.|...+....+.. ..+... ...+...+...+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666654332 112111 1222223333342334444444443321 23333333444444556676666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
..|..|...... .....--+..++...|+.++|..+|..+.
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666542111 22223334445556666666666666654
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.99 E-value=22 Score=29.74 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHccCChhhHHHHHH
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA---AFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~ 190 (480)
+.+...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 34455566777665554443 33322211 11123444555666655555544
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.87 E-value=23 Score=24.37 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=47.2
Q ss_pred hCcHHHHHHHHHHhhcCCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 011652 75 NAGTLAFCFFKWAEKQQNYEHSVRAYHSM--IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152 (480)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 152 (480)
.++++|.-+-+|+.... + .-...+ +..+...|+|++|..+.+... .||...|..|- -.+.|-.+++..
T Consensus 20 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG----Q-DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHH--HHhcccHHHHHH
Confidence 34457777778876552 2 222233 345567777777777664322 25555444433 346677777777
Q ss_pred HHHHHHhcCCCCCHHHH
Q 011652 153 TFNVMQKYGVTQNLAAF 169 (480)
Q Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (480)
.+..+...| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 776666655 4444443
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.71 E-value=60 Score=29.18 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=13.0
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
....|...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.34 E-value=23 Score=24.34 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=48.2
Q ss_pred hCcHHHHHHHHHHhhcCCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 011652 75 NAGTLAFCFFKWAEKQQNYEHSVRAYHSM--IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152 (480)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 152 (480)
.++++|.-+-+|+.... + .-...+ +..+...|+|++|..+.+... .||...|..|- -.+.|-.+++..
T Consensus 21 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALc--e~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG----E-EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALC--EYRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHH--HHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHH--HHhcccHHHHHH
Confidence 34457777778876552 2 222233 345667788888777765432 25555554443 346677777777
Q ss_pred HHHHHHhcCCCCCHHHH
Q 011652 153 TFNVMQKYGVTQNLAAF 169 (480)
Q Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (480)
.+..+...| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 776666655 4444444
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.50 E-value=63 Score=28.55 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI--VSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
...++.=|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 466777788888888888888887532111 12334444445544332 3456677777776666544444333333
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.17 E-value=1e+02 Score=30.03 Aligned_cols=80 Identities=9% Similarity=0.044 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK--- 317 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 317 (480)
....+.-.|+++.|.+.+-.. ...+..++...+..|.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445556678888888877754 24455555554444433332 11111000 00 11 2225566666654
Q ss_pred cCCHhHHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDM 331 (480)
Q Consensus 318 ~~~~~~a~~~~~~~ 331 (480)
..+..+|.+.|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46777777776655
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.76 E-value=43 Score=25.63 Aligned_cols=73 Identities=8% Similarity=-0.000 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
.+..|+.-....|...-.. +.+.++|..|..+++ .-...|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 58 ~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3445655444444322222 346778888888877 566677778888888888888888888888877666544
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.59 E-value=54 Score=27.66 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=8.3
Q ss_pred HHhhccCCHHHHHHHHHH
Q 011652 278 HTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~ 295 (480)
...+..|+.+-+.-+++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHc
Confidence 333445555544444433
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=60.34 E-value=56 Score=25.18 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=22.7
Q ss_pred CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 440 IRPSGETFG--KLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 440 ~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
..|....|. .....+...|..++..+++..+.+.++
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 345544432 344556677888888888877776654
No 279
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.70 E-value=86 Score=27.06 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
.++.....+...|.+.|++.+|..-|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 477778888888888888888777654
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.30 E-value=56 Score=29.92 Aligned_cols=111 Identities=10% Similarity=0.040 Sum_probs=65.5
Q ss_pred hCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 011652 75 NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.+.+.|+++-.+ .+++-....|..-.+.+...|++++|..+--..+..-.-++.|.+.+-..=...|...--+.+|
T Consensus 343 ~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 344456655533 3555566677777888888899999888877665543366666655544444445555566666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011652 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 155 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (480)
..+.+.| ..+..--.-+++.-...|+.+-.++++.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 6666655 3444333344444455555554444444
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.57 E-value=72 Score=25.19 Aligned_cols=138 Identities=12% Similarity=-0.009 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
+...-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+....+. .+.. .++..+-...+.+
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~--d~~~~vr~~a~~a 135 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KALK--DEDWFVRIAAAFA 135 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT--CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh--CCCHHHHHHHHHH
Confidence 44444444445555554322 222222222 234444455555555555533222222 2221 3555555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
+...|..+ +...+..+... ++..+-...+.++.+.+. .++...+.++.+. ++..+-...+.++.+
T Consensus 136 L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 136 LGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 66655543 33333333322 455555556666666554 4555555555542 344444444454444
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.18 E-value=50 Score=22.71 Aligned_cols=47 Identities=11% Similarity=-0.072 Sum_probs=21.8
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
...|++++|..+.+.+. .||...|-+|- -.+.|..+++...+..+..
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 34455555554443332 44555544432 2344555555555544444
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.16 E-value=1.2e+02 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
..++.-|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 344445555555555555555553
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.06 E-value=92 Score=25.54 Aligned_cols=89 Identities=7% Similarity=-0.039 Sum_probs=50.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh---cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIK---LCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
-+..+....++++|..++++..+ +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 46677888888888888887766 2222 111112222322332333334444444422 3456666666777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~ 437 (480)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7788888888887776653
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=52.97 E-value=53 Score=22.64 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=28.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS 200 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (480)
+...|++++|..+.+.+. .||...|-+|- -.+.|..+++...+..+.....|..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg~p~~ 103 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQDPRI 103 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCCCHHH
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCCCHHH
Confidence 345566666666554433 45666555443 2345555666655555554333333
No 286
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=52.77 E-value=89 Score=25.14 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 114 QIMWDLVNAMRTKR--MLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 114 ~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
..+..+|+.+-..+ ..+..-|..++.........++...+|..+
T Consensus 89 ~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~ 134 (224)
T 1s1e_A 89 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 134 (224)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34455666554333 255555555555444333333444444444
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.69 E-value=95 Score=25.45 Aligned_cols=90 Identities=10% Similarity=0.074 Sum_probs=58.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSK--GVAP----NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+.. .+........+..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 477888899999999999887652 2221 112223333333333333344444444432 56677777888999
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 011652 385 CQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~ 402 (480)
.+.|+.++|..+|-+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 999999999999987764
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.10 E-value=42 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=13.6
Q ss_pred HHHHHHHHccCChhhHHHHHHHhh
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~ 193 (480)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666665554
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.83 E-value=81 Score=25.35 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=8.3
Q ss_pred cCCChhHHHHHHHHHHHcC
Q 011652 212 KDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~ 230 (480)
+.|+.+.+..+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3444444444444444333
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.80 E-value=95 Score=24.90 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=11.7
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 011652 106 SLAKIRQYQIMWDLVNAMRTK 126 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~ 126 (480)
..++.|+.+.+..+++.+...
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 345556666666666554443
No 291
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=49.69 E-value=59 Score=22.17 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=40.4
Q ss_pred CchhHHHHHhhCCCCCCHHHHHHHHHHHhhCcHHHHH-HHHHH---hhcCCCCCCHHHHHHHH
Q 011652 46 PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC-FFKWA---EKQQNYEHSVRAYHSMI 104 (480)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~-~~~~~---~~~~~~~~~~~~~~~li 104 (480)
....+..+++..|+.++..++..++..|...+..|.+ +.+|+ ....+..|+....+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3567888899999999999888888877655543333 33443 24556777777776653
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.67 E-value=27 Score=27.36 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=7.2
Q ss_pred HhcCChhHHHHHHH
Q 011652 108 AKIRQYQIMWDLVN 121 (480)
Q Consensus 108 ~~~~~~~~a~~~~~ 121 (480)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555555554
No 293
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=48.58 E-value=1.1e+02 Score=25.12 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 236 VTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
.++.-+...+.+...+-++...++.+
T Consensus 230 Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 230 VTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp BCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred EeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 45666666666666666666655543
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.98 E-value=1.5e+02 Score=27.71 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCCHH--HH-HHHHHHHHccCChhhHHHHHHHhhcC
Q 011652 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNLA--AF-NGLLSALCKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (480)
..++.+++.|...+.+++|..+..+..--.. .++.. .| -.+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455666666666666666666655531000 01111 11 12233444556666666666555443
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.14 E-value=14 Score=30.77 Aligned_cols=55 Identities=7% Similarity=-0.082 Sum_probs=28.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHH--ccCChhhHHHHHHHh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAA-------FNGLLSALC--KSKNVRKAQEIFDCM 192 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 192 (480)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3444566677766666666655554444222 223332221 456666666665543
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.96 E-value=1.4e+02 Score=25.69 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI--VSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~ 445 (480)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 356677777778888888888877531111 12233334444444322 344556666666555544433
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.85 E-value=39 Score=25.50 Aligned_cols=25 Identities=0% Similarity=-0.043 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455666666677777777776664
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.62 E-value=99 Score=23.90 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCCCCC
Q 011652 325 YRVLKDMNSKGVAPN 339 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~ 339 (480)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344445555554443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.61 E-value=91 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555555666666666665553
No 300
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=45.60 E-value=98 Score=23.56 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=10.6
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHH
Q 011652 201 KTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
.+|.-++..+.+...+-.....|+
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhh
Confidence 444444444444444444444333
No 301
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.00 E-value=1.2e+02 Score=24.36 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
.+-.|.+.|.+++|.+++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 344566667777777777666553
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.61 E-value=98 Score=26.01 Aligned_cols=143 Identities=6% Similarity=-0.112 Sum_probs=58.8
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH---HHHHHHHHHhhccC
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS---FIYSVLVHTYGVEN 284 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 284 (480)
...+..|+.+-+.. +.+.|..++...-.+.+...+..|+.+-+..+++ .|..++. .-.+. +...+..|
T Consensus 36 ~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~-L~~A~~~g 106 (285)
T 3kea_A 36 YYAIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTA-LYYAVDSG 106 (285)
T ss_dssp HHHHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcH-HHHHHHcC
Confidence 33444566544433 3344444433222334444555666554444433 3333321 11122 23334455
Q ss_pred CHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhCCChHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADV---AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR-TCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 360 (480)
+.+-+..+++. |..++. ..+...+...+..|+.+- ++.+.+.|..+... .-...+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 55544433333 322221 111223333445555543 33334444333111 2233344445566666666
Q ss_pred HHHHHHH
Q 011652 361 RVFRRMI 367 (480)
Q Consensus 361 ~~~~~~~ 367 (480)
.+++.-.
T Consensus 179 ~Ll~~ga 185 (285)
T 3kea_A 179 LLLDYMT 185 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 5555433
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.38 E-value=1.2e+02 Score=24.40 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCCCCHHHH--------HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 114 QIMWDLVNAMRTKRMLNVETF--------CIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~--------~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+.|+.+|+.+......+...+ ...+..|.+.|.+++|.+++++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 566777777665543222221 23445667777777777777777653
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.11 E-value=1.3e+02 Score=24.42 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 148 EEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+.+.++|..|...|+... ...|......+...|++.+|..+|+.-.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777766665443 33456666666667777777777776655
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.99 E-value=1e+02 Score=23.22 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 289 AVDTFLEMEKNGILAD-VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.++|..|..+|+-.. ...|......+...|++.+|..+|..-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666665554332 3345555555666666666666666666655554
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.93 E-value=96 Score=22.99 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhC
Q 011652 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
.-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555555555544 44444444444444444
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.46 E-value=67 Score=24.48 Aligned_cols=42 Identities=7% Similarity=0.087 Sum_probs=19.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC--CC-CCHHHHHHHHHHHHHhC
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTK--RM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~li~~~~~~~ 145 (480)
+..+...+..-.|.++++.+.+. ++ .+..|...-+..+...|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444555555555444 33 44444444444444444
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.85 E-value=1.1e+02 Score=22.90 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=35.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|..++. --..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34556655332 3334455555555666777777777766666667666666666666664
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.71 E-value=1.3e+02 Score=23.43 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
+...-...+.++...+..+.. ..+..+.. .++...-...+.++...++.+....+.+ +.. .++..+-...+.+
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~--d~~~~vr~~a~~a 130 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK--DEDWFVRIAAAFA 130 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT--CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc--CCCHHHHHHHHHH
Confidence 444444455555555544332 23333332 2455555555666666655433322222 222 3555555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
+.+.+..+ +...+..+... ++...-...+.++.+.|. .++...+..+.+. ++..+-...+.++.+
T Consensus 131 L~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 131 LGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 66666543 33334444332 465666666666666664 4455555555542 344444444444444
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.54 E-value=1e+02 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=10.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444445555555555444
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.24 E-value=1.4e+02 Score=23.76 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=8.3
Q ss_pred HHHccCChhhHHHHHHH
Q 011652 175 ALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~ 191 (480)
..+..|+.+-+..+++.
T Consensus 43 ~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 43 IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555555555444
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.19 E-value=1e+02 Score=22.76 Aligned_cols=60 Identities=10% Similarity=-0.055 Sum_probs=36.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566665543 233444455555566677777777766666666666666666666664
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.78 E-value=59 Score=26.10 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=3.2
Q ss_pred HHhcCCHH
Q 011652 245 LCKAGRVD 252 (480)
Q Consensus 245 ~~~~g~~~ 252 (480)
.+..|+.+
T Consensus 49 A~~~~~~~ 56 (240)
T 3eu9_A 49 AAINNRID 56 (240)
T ss_dssp HHHTTCHH
T ss_pred HHHhCCHH
Confidence 33444443
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.06 E-value=73 Score=21.70 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011652 119 LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (480)
+++.+.+.++.+......+-. .....+.++|.++++.+...| +.+|..++.++...|+..-|.
T Consensus 26 vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 555555666555444433332 001135667777777776654 244566666666556554443
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.65 E-value=1.5e+02 Score=25.94 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHH
Q 011652 203 YSILLEGWGKDPNLPRAREIFREMV 227 (480)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (480)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556666667777777777776664
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.62 E-value=58 Score=26.16 Aligned_cols=14 Identities=7% Similarity=-0.182 Sum_probs=6.7
Q ss_pred HhCCChHHHHHHHH
Q 011652 351 IGRGETDEAYRVFR 364 (480)
Q Consensus 351 ~~~~~~~~a~~~~~ 364 (480)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455554444443
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.36 E-value=1.4e+02 Score=24.22 Aligned_cols=73 Identities=8% Similarity=0.049 Sum_probs=55.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
.++.|+.-....|. |++. .+.+.++|..|..+++ .-...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 112 rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 112 LYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp GGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 45556655444443 2232 3578899999999888 677788899999999999999999999999888777543
No 318
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.33 E-value=75 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=6.8
Q ss_pred HHhCCHHHHHHHHHH
Q 011652 142 ARVQKVEEAVYTFNV 156 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~ 156 (480)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 444444444444443
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.13 E-value=1.1e+02 Score=22.41 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=29.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 400 MKLKRFIPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344555544322 23334444444 45556666666666555555555555555555554
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.31 E-value=60 Score=23.56 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=14.9
Q ss_pred hcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 011652 109 KIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 144 (480)
..+..-.|.++++.+.+.++ .+..|....+..+...
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33334444444444444443 3443333333333333
No 321
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.26 E-value=97 Score=21.14 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 011652 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETFGKL 450 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 450 (480)
.|.++.+++...|+.|+..+..-++..|...+- + +.++.++.. ..|..|+...+..+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456666777777787887777777777666553 2 333332222 33666666555443
No 322
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.22 E-value=58 Score=24.00 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhC
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
+..+...++.-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333344444445555555555444 44444444444444444
No 323
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=34.86 E-value=1.9e+02 Score=23.73 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHhhCcHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCC--CCHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ-QNYEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRM--LNVETFC 135 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~--~~~~~~~ 135 (480)
.++++.+..+.....-.......+|+..... ..-..+..-+..++..+...+ .-..+..+|..+-..+- .+..-|.
T Consensus 73 ~l~~e~l~~l~~~~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~ 152 (256)
T 2jul_A 73 RHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFV 152 (256)
T ss_dssp ---CTHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 3444445545444332223334444443332 122345555555555443222 23456667776654432 5655566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH-ccC-----------ChhhHHHHHHHhhcCCCCChhh
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYG-VTQNLAAFNGLLSALC-KSK-----------NVRKAQEIFDCMKDRFIPDSKT 202 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~-~~~-----------~~~~a~~~~~~~~~~~~~~~~~ 202 (480)
.++..+......++...+|..+-..| -..+..-+..++..+. ..| .-+.+..+|..+... .....+
T Consensus 153 ~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d-~dG~Is 231 (256)
T 2jul_A 153 VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN-QDGVVT 231 (256)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCS-TTCSBC
T ss_pred HHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCC-CCCcEe
Confidence 66655544444555666666654321 1345444544444332 123 234566677766442 234567
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHH
Q 011652 203 YSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
+.-++..+.+...+-++...|+.+
T Consensus 232 ~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 232 IDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhccc
Confidence 888888888888888888887764
No 324
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=34.84 E-value=3.8e+02 Score=27.30 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHHHHHHHcCC---HhHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 310 ALIGAFCKANK---FKNVYRVLKDMNSKG----VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 310 ~li~~~~~~~~---~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.++...|..|+ .+.|.+.|+.....+ +.|+. -..+...-.+.|..++-..+++.... ..+..--..++.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~--~~~~~ek~~ll~ 766 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQ--AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHH--CCSHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHH
Confidence 35556677765 346677777765532 33443 33333444455666666666666655 234444456777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 011652 383 MFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+++...+.....++++.....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCT
T ss_pred HhCCCCCHHHHHHHHHHHhCC
Confidence 777778887777777776643
No 325
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=34.69 E-value=71 Score=19.88 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR 143 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 143 (480)
-+++.+++..-.++++..+++..+.|..+.++|..-++..++
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344444444444555555555555544444444444444433
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.62 E-value=2.1e+02 Score=29.33 Aligned_cols=108 Identities=12% Similarity=0.054 Sum_probs=67.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------------
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI------------------- 406 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------- 406 (480)
++..|...|..+-+.+ +..-.+.++..--.+.++|...|++++|...|+++-. |+.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcc
Confidence 5555666666665443 2333444554445566777777777777777775431 111
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcC
Q 011652 407 ----PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE----TFGKLRKLLIKEG 458 (480)
Q Consensus 407 ----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 458 (480)
....-|..++..+-+.+-++.+.++-+.+++.--..|.. .|..+.++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 012367888999999999999999999888642222333 4666666666554
No 327
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.52 E-value=51 Score=20.07 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
.++|.+.|.+|++..-.+...+|...++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 357777777776544334556777777766
No 328
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.30 E-value=2.5e+02 Score=25.18 Aligned_cols=333 Identities=12% Similarity=0.067 Sum_probs=139.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccC
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSK 180 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~ 180 (480)
.+...++.|+.+-+.-+++.-...+..+... .+.+...+..|+.+-+.-++ +.|..++.. .-...+...+..|
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMVKLLL----ENNANPNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcC
Confidence 3445566777776666665421111111111 23344455667665444443 334333221 1112334455667
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHH
Q 011652 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT--YGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~ 258 (480)
+.+.+..+++.-......+..-++ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 125 ~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v---- 195 (437)
T 1n11_A 125 HVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV---- 195 (437)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----
T ss_pred CHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----
Confidence 777666666543221111222222 233334556654 3444455555444321 12234445566666443
Q ss_pred HHhhhCCCCccHHHH--HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 259 KSMDSTVCRPTSFIY--SVLVHTYGVENRIEDAVDTFLEMEKNGILADV---AMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
+.+.+.|..++...+ ...+...+..|+.+-+.. +.+.|..++. ...+ .+...+..|+.+-+ +.+.+
T Consensus 196 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~ 266 (437)
T 1n11_A 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS----LLQYGGSANAESVQGVT-PLHLAAQEGHAEMV----ALLLS 266 (437)
T ss_dssp HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHT
T ss_pred HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCC-HHHHHHHCCCHHHH----HHHHh
Confidence 333344433322110 112333445566554433 3344433321 1122 23334556665443 33344
Q ss_pred CCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 011652 334 KGVAPNS---RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM- 409 (480)
Q Consensus 334 ~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~- 409 (480)
.|..++. ...+.+ ...+..|+.+-+..+++.-......+..-.+. +...+..|+.+-+.-+ .+.|..++.
T Consensus 267 ~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~gad~n~~ 340 (437)
T 1n11_A 267 KQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-LHVASHYGNIKLVKFL----LQHQADVNAK 340 (437)
T ss_dssp TTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHH----HHTTCCTTCC
T ss_pred cCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH-HHHHHHcCcHHHHHHH----HhcCCCCCCC
Confidence 4443332 222233 33345566665555554321111111111222 3334556776544433 344444332
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 410 --HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET--FGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 410 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
.-++.+.. .+..|..+ +.+.+++.|..|+... -.+.+....+.|..+ ..++++..
T Consensus 341 ~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~-~~~~l~~~ 399 (437)
T 1n11_A 341 TKLGYSPLHQ-AAQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS-VTDVLKVV 399 (437)
T ss_dssp CTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHH-HHHHHHHH
T ss_pred CCCCCCHHHH-HHHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHH-HHHHHHhc
Confidence 12223332 33455543 4445556676665421 112334445556543 33444433
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.26 E-value=93 Score=20.03 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=38.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3456676666544 34455555543 455677788877776666677777777777777664
No 330
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.21 E-value=2e+02 Score=24.70 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHH
Q 011652 222 IFREMVDTGCNPDIVTY--GIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 222 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~ 258 (480)
+.+.+.+.|..++.... .+.+...+..|..+.+..++
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 44445566655543211 12334445566666554444
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.92 E-value=81 Score=23.04 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhC
Q 011652 112 QYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQ 145 (480)
Q Consensus 112 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 145 (480)
..-.|.++++.+.+.++ .+..|....+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544444 44444444444444443
No 332
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.57 E-value=1.4e+02 Score=23.67 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=9.2
Q ss_pred HHHHhcCChhHHHHHHHH
Q 011652 105 ESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~ 122 (480)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455555555555544
No 333
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.64 E-value=1.9e+02 Score=23.11 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=20.5
Q ss_pred cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011652 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246 (480)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (480)
+-.+.+.|+-++-+|++.|-.|....-..++-+.-
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 35667777777777777765554444444444433
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.30 E-value=1e+02 Score=22.83 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=33.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
.+.+.|.+++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445566655432 22334444444 55677777777766666666665555666666653
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.24 E-value=1.2e+02 Score=22.64 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=33.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 400 MKLKRFIPSMHTFSVLINGLCDKG-IVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 445565554332 23344444444 455677777777766656666665555666666553
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.75 E-value=4.4e+02 Score=27.04 Aligned_cols=88 Identities=5% Similarity=-0.107 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------------
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP----------------- 442 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------------- 442 (480)
++..+...|.++-|.++..-. +.++..--.+..+|...|++++|..+|+++-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 667777888888766544322 22443334577789999999999999987641 2211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 443 ------SGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 443 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...-|..++..+.+.|-++.+.++.+...+.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1125788999999999999999998887754
No 337
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.41 E-value=1.9e+02 Score=27.40 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhH
Q 011652 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
..-++..|++.|-.+.|.++++.+..+...+...+ ..+..+.++|+++.
T Consensus 519 ~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 519 IEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhh
Confidence 33344455555555555555555544333333333 33444445554443
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.52 E-value=3.2e+02 Score=25.12 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 011652 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
.+.+-|.++- .+.|++--...|..-...+...|++++|.++-...+.+.-.+..|.+.+-..-...|+..-.+.+|.
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 5556555543 3345555556666667788888999999999888888777788888777777667777777888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.+.+.|- .+..--.-+++.-...|+.+-..+.
T Consensus 420 ~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 420 ILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccCc-cchHHhhHHhHHHHhccHHHHHHHH
Confidence 8877652 2332222334444444554443333
No 339
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.30 E-value=56 Score=19.31 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 011652 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGR--EDVLKFLQEKM 470 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~ 470 (480)
+.++.+++.|+.++ ....++.+.|. ++.|.+++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 34555555566542 23345555555 77777777766
No 340
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=30.10 E-value=70 Score=17.28 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
...-+...+..|+++.+..+-.++..
T Consensus 13 iEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 44445556666777766666655544
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.82 E-value=4.6e+02 Score=26.70 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=23.8
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
.+.|..++-..+++..... .+..--..++.+++...+.....++++....
T Consensus 737 ~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 737 IAQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3445444444444444442 2333334455555555555555555555443
No 342
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.43 E-value=2e+02 Score=22.42 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+...-...+.++...|+.+ +...+..+.. .++..+-...+.++.+.++.+. ...+..+.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444445555555432 2233333332 2455555555666666665433 333333333 245555555666
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
++...++.+ +...+..+.+ .++..+-...+.++.+.+. .++...+..+... ++...-...+.++.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK--DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 666665543 2333333332 3555555666666666665 3344444444432 34444443344433
No 343
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.41 E-value=2.1e+02 Score=22.68 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 356 TDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 356 ~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
...+..+|..|.. ....-+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554 223344455555555555555555555555555554444
No 344
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.38 E-value=2.1e+02 Score=22.69 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=5.3
Q ss_pred CChHHHHHHHHHH
Q 011652 423 GIVSDSCVLLEDM 435 (480)
Q Consensus 423 g~~~~A~~~~~~~ 435 (480)
|+...+.++.+.+
T Consensus 221 ~~~~~~~~l~~~l 233 (237)
T 3b7b_A 221 SQVWSALQMSKAL 233 (237)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444433
No 345
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.21 E-value=1.3e+02 Score=24.42 Aligned_cols=54 Identities=6% Similarity=-0.143 Sum_probs=27.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHcc---CChhhHHHHHHHh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNL-------AAFNGLLSALCKS---KNVRKAQEIFDCM 192 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~ 192 (480)
+...+..|+.+....+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcC
Confidence 44455666776666666666555544332 2222333 33333 6666555555543
No 346
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.86 E-value=2.2e+02 Score=22.59 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=8.0
Q ss_pred CCChHHHHHHHHHHHh
Q 011652 353 RGETDEAYRVFRRMIK 368 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~ 368 (480)
..+.+.|+-++.+|.+
T Consensus 27 GSDpDAAly~LaRml~ 42 (204)
T 2r9g_A 27 GSDVDAALHYLARLVE 42 (204)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3445555555555554
No 347
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=28.78 E-value=1.6e+02 Score=20.92 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCchhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh
Q 011652 35 AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113 (480)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 113 (480)
...+..+...-+-.++....++.| ++...+..+-....++.. ...++++......| ...+++.|+.++.+++.-
T Consensus 8 ~~~i~~Iae~m~~~~wK~laR~LG--lse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G---~~aa~~~Li~aLr~~~l~ 82 (115)
T 3ezq_A 8 SKYITTIAGVMTLSQVKGFVRKNG--VNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHG---KKEAYDTLIKDLKKANLC 82 (115)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHTT--CCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHcC--CCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhC---cccHHHHHHHHHHHccch
Confidence 344555555557777778888877 566666666666655554 66777766555555 566888899888887766
Q ss_pred hHHHHHHHHHH
Q 011652 114 QIMWDLVNAMR 124 (480)
Q Consensus 114 ~~a~~~~~~~~ 124 (480)
..|..+-+.+.
T Consensus 83 ~~Ad~Iq~~l~ 93 (115)
T 3ezq_A 83 TLAEKIQTIIL 93 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66665555443
No 348
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.68 E-value=2.8e+02 Score=23.72 Aligned_cols=20 Identities=5% Similarity=0.194 Sum_probs=11.1
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 011652 103 MIESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~ 122 (480)
.+...++.|+++.+..+++.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444566666666555543
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.03 E-value=3.5e+02 Score=24.70 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=20.5
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 354 (480)
.++.+.|...+.+|.+.|..|....-..+..+.-.-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4566677777777776666554444444444443333
No 350
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.86 E-value=3.5e+02 Score=24.68 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC-----HHHHHHHHHHHHHCCC
Q 011652 248 AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR-----IEDAVDTFLEMEKNGI 301 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~ 301 (480)
.++.+.|+.++.+|...|..|....-..+..+...-|. ...|...++.....|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 45666666666666666655544444444444433332 2234444444444443
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.59 E-value=2e+02 Score=21.83 Aligned_cols=60 Identities=5% Similarity=-0.080 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C--CHHHHHHHHH-HH-----HHhCCHHHHHHHHHHHHh
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM-L--NVETFCIIMR-KY-----ARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~~~~ 159 (480)
.|...+..+-. |++-+|-++++..-.... + ....|..||. .. .+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444433 888888888888776654 4 4555666666 22 346788888888776654
No 352
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.58 E-value=3.9e+02 Score=25.05 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhcC--CCCChh--h-HHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSK--T-YSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
...+|.+++.|...+.++.|..+..+..-. ..++.. . +..+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456788889999999999999999887531 111111 1 223456667788888888888887754
No 353
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.10 E-value=57 Score=26.83 Aligned_cols=25 Identities=0% Similarity=-0.164 Sum_probs=12.8
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCC
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPD 234 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (480)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3345555555555555555544443
No 354
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.08 E-value=1.9e+02 Score=21.31 Aligned_cols=17 Identities=6% Similarity=-0.111 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHhcC
Q 011652 145 QKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~ 161 (480)
+..-.|.++++.+.+.+
T Consensus 35 ~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKF 51 (145)
T ss_dssp SSCCCHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 33334444444444433
No 355
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.80 E-value=2.4e+02 Score=22.33 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 011652 388 GELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 388 g~~~~a~~~~~~~~~~~~~p 407 (480)
.+.+.|+-.+.+|.+.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444444444444444333
No 356
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.72 E-value=1.7e+02 Score=22.22 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=21.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIEK--GIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 458 (480)
++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344444444455555555555544 44445544444445555444
No 357
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.59 E-value=1.5e+02 Score=19.84 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
.+++.+.+.++.+..-+..+-.. ....++|..+++.+...| ..+|..++.++...+.
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~---~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNE---PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS---SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHcC---CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCH
Confidence 45555555555554444443332 345666666666665433 3555556666555554
No 358
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.27 E-value=2e+02 Score=21.35 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34444444444455555555555554433344433333344444443
No 359
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.85 E-value=90 Score=23.32 Aligned_cols=32 Identities=6% Similarity=0.079 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 011652 113 YQIMWDLVNAMRTKRM-LNVETFCIIMRKYARV 144 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 144 (480)
.-.|.++++.+.+.++ .+..|....+..+...
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3334444444444433 3333333333333333
No 360
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=25.65 E-value=2e+02 Score=21.18 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=6.6
Q ss_pred HhcCChhHHHHHHH
Q 011652 108 AKIRQYQIMWDLVN 121 (480)
Q Consensus 108 ~~~~~~~~a~~~~~ 121 (480)
++.|+.+.+..+++
T Consensus 11 ~~~g~~~~v~~ll~ 24 (167)
T 3v31_A 11 AAQGEMLYLATRIE 24 (167)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 44455554444444
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.55 E-value=1e+02 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.038 Sum_probs=20.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444455555555555444445555444445554444
No 362
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.52 E-value=1.2e+02 Score=22.00 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=17.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (480)
..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333334444455554444433334444333344444443
No 363
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.18 E-value=2.4e+02 Score=26.73 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=36.3
Q ss_pred CChhhHHHHHHHhhcCCCC-ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
.+.........++..+++. +..--.-++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|+++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4455566666666665444 3455677889999999999999999998755333 44455 556688999988765
No 364
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.62 E-value=3.4e+02 Score=23.45 Aligned_cols=52 Identities=6% Similarity=0.112 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011652 389 ELEKAFKVWKYMKLKRFIPSM--HTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 440 (480)
+..+..++-..+...++.|.. -+...-+..+.+.+++..|..+.+++++.+.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 455666666666666666543 2445556677889999999999999998664
No 365
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.93 E-value=86 Score=27.45 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=10.6
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 011652 452 KLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~ 469 (480)
....+.|..+-+..+++.
T Consensus 249 ~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHc
Confidence 334455776666666655
No 366
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.18 E-value=2.8e+02 Score=21.92 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=5.2
Q ss_pred CCChHHHHHHHHH
Q 011652 353 RGETDEAYRVFRR 365 (480)
Q Consensus 353 ~~~~~~a~~~~~~ 365 (480)
.|+...+.++.+.
T Consensus 220 ~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 220 NSQVWSALQMSKA 232 (237)
T ss_dssp TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 367
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.12 E-value=1.5e+02 Score=18.92 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=4.8
Q ss_pred HhhCCCCCCHH
Q 011652 54 LDQSGIRVSPE 64 (480)
Q Consensus 54 l~~~~~~~~~~ 64 (480)
|...|..+++.
T Consensus 8 l~~~g~~~t~~ 18 (83)
T 2fu4_A 8 LKKAGLKVTLP 18 (83)
T ss_dssp HHHTTCCCCHH
T ss_pred HHHcCCCcCHH
Confidence 44444444443
No 368
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.61 E-value=1.7e+02 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIE-----KGIRPSGETFGKL 450 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 450 (480)
..+......+.+.|++++|++..++... ..+..+..+..+|
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SL 61 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL 61 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3445566778888888888776655431 2345566654443
No 369
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.44 E-value=2.7e+02 Score=21.95 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=21.8
Q ss_pred HHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
...++.|+.+....+++.-.. -...+..-++ .+...+..|+.+-+..+++
T Consensus 8 ~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLME 58 (232)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHH
Confidence 344556666666655554111 1111222222 2333344566555544444
No 370
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.27 E-value=2.5e+02 Score=21.08 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHhhC---cHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCHHH
Q 011652 59 IRVSPEIVEDVLEKFRNA---GTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVET 133 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 133 (480)
-.++...+..++..+... ......+|+.+.....-..+..-+..++.........+....+|+.+-..+ ..+..-
T Consensus 34 G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e 113 (183)
T 1s6c_A 34 GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE 113 (183)
T ss_dssp SEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHH
T ss_pred CcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHH
Confidence 346666666666666432 114556666664433323455555555555444444556666777665433 355555
Q ss_pred HHHHHHHHHH-hCC-----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 011652 134 FCIIMRKYAR-VQK-----------VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 134 ~~~li~~~~~-~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 191 (480)
+..++..... .|. .+.+..++..+-..| .....+.-++..+.+...+-+....|+.
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 114 MMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 5555544321 132 245556666553322 1233455555555555545555555543
No 371
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.93 E-value=2.6e+02 Score=21.19 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHh
Q 011652 388 GELEKAFKVWKYMKL 402 (480)
Q Consensus 388 g~~~~a~~~~~~~~~ 402 (480)
|++-+|-++|+..=.
T Consensus 46 g~yfeaHEvLEe~W~ 60 (161)
T 2ijq_A 46 GEFHESHDCFEDEWY 60 (161)
T ss_dssp TCHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHH
Confidence 555555555554443
No 372
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.92 E-value=3.8e+02 Score=22.97 Aligned_cols=24 Identities=4% Similarity=0.131 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAM 123 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~ 123 (480)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 455677777778888888777765
No 373
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.42 E-value=1.4e+02 Score=17.86 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=17.9
Q ss_pred hCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011652 75 NAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117 (480)
Q Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 117 (480)
.++++|.-+-+|+....+ ....+--..+..+...|++++|+
T Consensus 20 HcH~EA~tIA~~L~~~~~--~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 20 HCHQEAASIADWLAQEEC--MAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TCHHHHHHHHHHHHTSST--THHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHccchHhHhh
Confidence 444578888888865532 11222222334556777777764
No 374
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.40 E-value=3.2e+02 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 388 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
.+.+.|+-.+.+|.+.|-.|....-..++.+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44445555555554444333333333333333
No 375
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.22 E-value=2.9e+02 Score=21.30 Aligned_cols=51 Identities=6% Similarity=0.116 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.+..++..+.+.|.-.|...-...+....+.|.+. ...+-.++..+|+.+
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH
Confidence 455667777888887766666666666666554433 355666777777763
No 376
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.99 E-value=3.8e+02 Score=23.13 Aligned_cols=16 Identities=0% Similarity=-0.130 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHH
Q 011652 384 FCQGGELEKAFKVWKY 399 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~ 399 (480)
.+..|+.+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455666666555554
No 377
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.78 E-value=3.2e+02 Score=21.67 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=20.6
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 011652 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG 354 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 354 (480)
+..+.+.|+-.+.+|.+.| .|....-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666777777777766 554444444444444433
No 378
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.53 E-value=1.9e+02 Score=22.91 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=12.9
Q ss_pred HHHHHccCChhhHHHHHHHhhc
Q 011652 173 LSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+..|.+.|.+++|.++|++.-.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3456666666666666666544
No 379
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.48 E-value=4.7e+02 Score=23.49 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=84.0
Q ss_pred HHHHHHHHhhccCC---HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHH
Q 011652 272 IYSVLVHTYGVENR---IEDAVDTFLEMEKNG----ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344 (480)
Q Consensus 272 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 344 (480)
.-..++...|..|+ .+.|.+.|+.....+ ++|+... .+-+.. .+..++-..+++..... .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~---~Vy~~~-~~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL---AVFAVG-AQSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH---HHHHHH-TTSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce---eEEeee-eCCHHHHHHHHHHHhcC---CCHHHHH
Confidence 34566777778777 456778888876542 4454322 111111 22333344555555554 3555567
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKLCE-ADADTYTMMIKMFCQG-GELEKAFKVWKY----MKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-g~~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~ 418 (480)
.++.+++...+.....++++....+.. ........ +.+.... ...+.|.+.+++ +.+. +.++...+..++..
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~-~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQI-LTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHH-HHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHH-HHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHH
Confidence 788888888899888888888776321 22233332 3333332 234556555542 3322 11233566677766
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~ 437 (480)
....-..++-.+-++...+
T Consensus 350 ~~~~~~t~~~l~e~~~Ff~ 368 (419)
T 3rjo_A 350 TTNQFSTRTRLEEVKGFFS 368 (419)
T ss_dssp TTTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHH
Confidence 6554444444444444443
No 380
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.27 E-value=1.2e+02 Score=22.22 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=13.5
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 011652 104 IESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~ 122 (480)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455667888888777776
Done!