BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011653
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 185/388 (47%), Gaps = 55/388 (14%)
Query: 46 LNLALNRFSGTIPSSITN-ASKLTLLELGGNTFSG-LIPDTIGNLRN-LAWLGLAYNNXX 102
L+L+ N FSG +P S+TN ++ L L+L N FSG ++P+ N +N L L L N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 103 XXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPA 162
+NC +L SL+ N L G +PSS+G+LSK L L + + G IP
Sbjct: 405 GKIPPTL-----SNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQE 458
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ + L TL+L+ N LTG IP+ L + L+ N+L G P + L+ L L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF------------ 270
N FSG+IP+ L + SL +L L +N F IP+ ++ + +F
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 271 ----------------------------------SSNLLVGTLSFDIGNLKVLLGINLSE 296
+S + G S N ++ +++S
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSME 356
N LSG +P IG + L I++L +N + G IP+ DL L +++LS+NK+ G IP++M
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 357 KLFYLRELNLSFNELEGEIPSGGIFANF 384
L L E++LS N L G IP G F F
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 190/412 (46%), Gaps = 77/412 (18%)
Query: 38 LSLPTVEHLNLALNRFSGTIPSSITNASK-LTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96
L L ++++L+LA N+F+G IP ++ A LT L+L GN F G +P G+ L L L
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIA----- 151
+ NN + L+ L+ N G LP S+ NLS SL TL ++
Sbjct: 323 SSNNFSGELPMDTLLKM----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 152 ---------------------NCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRL 190
N +G IPP +SN S L++L L N L+G IP++ G L
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 191 QKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250
KL+ L L N L G P EL ++ L+ L+L N +G IPS LSN T+L ++ L +NR
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATI--- 307
T IP RL+++ L S+N G + ++G+ + L+ ++L+ N +G +PA +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 308 -----------------------------GGLKSLQ-IMDLAYNRLE------------- 324
G L Q I NRL
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 325 GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376
G +FD+ S+ +++S N +SG IPK + + YL LNL N++ G IP
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 175/364 (48%), Gaps = 40/364 (10%)
Query: 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXX 102
++HL ++ N+ SG + ++ L L++ N FS IP +G+ L L ++ N
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 103 XXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPA 162
+ C +L+ LN N G +P KSL+ L +A +G IP
Sbjct: 234 GDFSRAI-----STCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDF 285
Query: 163 ISNLSNLLT-LVLEGNKLTGPIPTTFG-------------------------RLQKLQGL 196
+S + LT L L GN G +P FG +++ L+ L
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 197 FLAFNKLVGSCPDELCHLD-RLDKLVLLGNKFSGSI-PS-CLSNLTSLRFLYLGSNRFTS 253
L+FN+ G P+ L +L L L L N FSG I P+ C + +L+ LYL +N FT
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSL 313
IP T +++ L S N L GT+ +G+L L + L N L G++P + +K+L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373
+ + L +N L G+IP + T+L ++LSNN+++G IPK + +L L L LS N G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 374 EIPS 377
IP+
Sbjct: 526 NIPA 529
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 169/359 (47%), Gaps = 17/359 (4%)
Query: 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNX 101
++HL+++ N+ SG +I+ ++L LL + N F G IP L++L +L LA N
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 278
Query: 102 XXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP- 160
C L L+ GN G +P G+ S +N + SG +P
Sbjct: 279 TGEIPDFLS----GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPM 333
Query: 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQ-KLQGLFLAFNKLVGSCPDELCH--LDRL 217
+ + L L L N+ +G +P + L L L L+ N G LC + L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
+L L N F+G IP LSN + L L+L N + IPS+ L + L N+L G
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 278 TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSL 337
+ ++ +K L + L N+L+G++P+ + +L + L+ NRL G+IP+ L +L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 338 EVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP------SGGIFANFTAETEH 390
++ LSNN SG+IP + L L+L+ N G IP SG I ANF A +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 137/316 (43%), Gaps = 55/316 (17%)
Query: 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISG-NIPPAI--SNLSNLLT 171
+C L+ LN N LD S G SLE L ++ SISG N+ + L
Sbjct: 120 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 179
Query: 172 LVLEGNKLTGPIPTT---------------------FGRLQKLQGLFLAFNKLVGSCPDE 210
L + GNK++G + + G LQ L ++ NKL G
Sbjct: 180 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 239
Query: 211 LCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILF-LD 269
+ L L + N+F G IP L SL++L L N+FT IP D L LD
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 297
Query: 270 FSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA-TIGGLKSLQIMDLAYNRLEGQIP 328
S N G + G+ +L + LS NN SG++P T+ ++ L+++DL++N G++P
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 329 ESFDDLTS---------------------------LEVMNLSNNKISGSIPKSMEKLFYL 361
ES +L++ L+ + L NN +G IP ++ L
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 362 RELNLSFNELEGEIPS 377
L+LSFN L G IPS
Sbjct: 418 VSLHLSFNYLSGTIPS 433
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 185/388 (47%), Gaps = 55/388 (14%)
Query: 46 LNLALNRFSGTIPSSITN-ASKLTLLELGGNTFSG-LIPDTIGNLRN-LAWLGLAYNNXX 102
L+L+ N FSG +P S+TN ++ L L+L N FSG ++P+ N +N L L L N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 103 XXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPA 162
+NC +L SL+ N L G +PSS+G+LSK L L + + G IP
Sbjct: 408 GKIPPTL-----SNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQE 461
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ + L TL+L+ N LTG IP+ L + L+ N+L G P + L+ L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF------------ 270
N FSG+IP+ L + SL +L L +N F IP+ ++ + +F
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 271 ----------------------------------SSNLLVGTLSFDIGNLKVLLGINLSE 296
+S + G S N ++ +++S
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSME 356
N LSG +P IG + L I++L +N + G IP+ DL L +++LS+NK+ G IP++M
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 357 KLFYLRELNLSFNELEGEIPSGGIFANF 384
L L E++LS N L G IP G F F
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 190/412 (46%), Gaps = 77/412 (18%)
Query: 38 LSLPTVEHLNLALNRFSGTIPSSITNASK-LTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96
L L ++++L+LA N+F+G IP ++ A LT L+L GN F G +P G+ L L L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIA----- 151
+ NN + L+ L+ N G LP S+ NLS SL TL ++
Sbjct: 326 SSNNFSGELPMDTLLKM----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 152 ---------------------NCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRL 190
N +G IPP +SN S L++L L N L+G IP++ G L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 191 QKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250
KL+ L L N L G P EL ++ L+ L+L N +G IPS LSN T+L ++ L +NR
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATI--- 307
T IP RL+++ L S+N G + ++G+ + L+ ++L+ N +G +PA +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 308 -----------------------------GGLKSLQ-IMDLAYNRLE------------- 324
G L Q I NRL
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 325 GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376
G +FD+ S+ +++S N +SG IPK + + YL LNL N++ G IP
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 175/364 (48%), Gaps = 40/364 (10%)
Query: 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXX 102
++HL ++ N+ SG + ++ L L++ N FS IP +G+ L L ++ N
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 103 XXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPA 162
+ C +L+ LN N G +P KSL+ L +A +G IP
Sbjct: 237 GDFSRAI-----STCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDF 288
Query: 163 ISNLSNLLT-LVLEGNKLTGPIPTTFG-------------------------RLQKLQGL 196
+S + LT L L GN G +P FG +++ L+ L
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 197 FLAFNKLVGSCPDELCHLD-RLDKLVLLGNKFSGSI-PS-CLSNLTSLRFLYLGSNRFTS 253
L+FN+ G P+ L +L L L L N FSG I P+ C + +L+ LYL +N FT
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSL 313
IP T +++ L S N L GT+ +G+L L + L N L G++P + +K+L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373
+ + L +N L G+IP + T+L ++LSNN+++G IPK + +L L L LS N G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 374 EIPS 377
IP+
Sbjct: 529 NIPA 532
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 169/359 (47%), Gaps = 17/359 (4%)
Query: 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNX 101
++HL+++ N+ SG +I+ ++L LL + N F G IP L++L +L LA N
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 281
Query: 102 XXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP- 160
C L L+ GN G +P G+ S +N + SG +P
Sbjct: 282 TGEIPDFLS----GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPM 336
Query: 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQ-KLQGLFLAFNKLVGSCPDELCH--LDRL 217
+ + L L L N+ +G +P + L L L L+ N G LC + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
+L L N F+G IP LSN + L L+L N + IPS+ L + L N+L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 278 TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSL 337
+ ++ +K L + L N+L+G++P+ + +L + L+ NRL G+IP+ L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 338 EVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP------SGGIFANFTAETEH 390
++ LSNN SG+IP + L L+L+ N G IP SG I ANF A +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 137/316 (43%), Gaps = 55/316 (17%)
Query: 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISG-NIPPAI--SNLSNLLT 171
+C L+ LN N LD S G SLE L ++ SISG N+ + L
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 172 LVLEGNKLTGPIPTT---------------------FGRLQKLQGLFLAFNKLVGSCPDE 210
L + GNK++G + + G LQ L ++ NKL G
Sbjct: 183 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 211 LCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILF-LD 269
+ L L + N+F G IP L SL++L L N+FT IP D L LD
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 270 FSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA-TIGGLKSLQIMDLAYNRLEGQIP 328
S N G + G+ +L + LS NN SG++P T+ ++ L+++DL++N G++P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 329 ESFDDLTS---------------------------LEVMNLSNNKISGSIPKSMEKLFYL 361
ES +L++ L+ + L NN +G IP ++ L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 362 RELNLSFNELEGEIPS 377
L+LSFN L G IPS
Sbjct: 421 VSLHLSFNYLSGTIPS 436
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 10/231 (4%)
Query: 159 IPPAISNLSNLLTLVLEG-NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRL 217
IP +++NL L L + G N L GPIP +L +L L++ + G+ PD L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILF-LDFSSNLLV 276
L N SG++P +S+L +L + NR + IP ++ + + S N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 277 GTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE---GQIPESFDD 333
G + NL + ++LS N L GD G K+ Q + LA N L G++ S
Sbjct: 188 GKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--- 243
Query: 334 LTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANF 384
+L ++L NN+I G++P+ + +L +L LN+SFN L GEIP GG F
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 128/298 (42%), Gaps = 80/298 (26%)
Query: 57 IPSSITNASKLTLLELGG-NTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXA 115
IPSS+ N L L +GG N G IP I L L +L + + N
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--------------- 112
Query: 116 NCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175
+ G +P + + K+L TL + ++SG +PP+IS+L NL+ + +
Sbjct: 113 --------------VSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCL 235
GN+++G IP ++G KL + + N+ +G IP
Sbjct: 158 GNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLTGKIPPTF 194
Query: 236 SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLS 295
+NL ++ F+D S N+L G S G+ K I+L+
Sbjct: 195 ANL-------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353
+N+L+ D+ +G K+L +DL NR+ G +P+ L L +N+S N + G IP+
Sbjct: 230 KNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 90/231 (38%), Gaps = 23/231 (9%)
Query: 1 MNNLVGMVSATIFNMXXXXXXXXXXXXXXXXXPSRIGLSLPTVEHLNLALNRFSGTIPSS 60
+NNLVG + I + P + + T+ L+ + N SGT+P S
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPS 144
Query: 61 ITNASKLTLLELGGNTFSGLIPDTIGNLRNL-------------------AWLGLAYNNX 101
I++ L + GN SG IPD+ G+ L A L LA+ +
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 102 XXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPP 161
+ K + ++ N L F +G LSK+L L + N I G +P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDLGKVG-LSKNLNGLDLRNNRIYGTLPQ 262
Query: 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC 212
++ L L +L + N L G IP G LQ+ A NK + P C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 219 KLVLLGNKFSGSIPS-CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
KL L NK S S+PS LT LR LYL N+ ++ F LK++ L + N L
Sbjct: 41 KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 278 TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSL 337
L L + L N L P L L + L YN L+ FD LTSL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 338 EVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGG 379
+ + L NN++ + +KL L+ L L N+L+ +P G
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 8/193 (4%)
Query: 154 SISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH 213
+I NIP L L+ NKL+ F RL KL+ L+L NKL
Sbjct: 30 AIPSNIPADTKKLD------LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 214 LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSN 273
L L+ L + NK L +L L L N+ S+ P F L + +L N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 274 LLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPE-SFD 332
L L L + L N L L L+ + L N+L+ ++PE +FD
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Query: 333 DLTSLEVMNLSNN 345
L L+++ L N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 62/155 (40%), Gaps = 1/155 (0%)
Query: 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
KLR L N L LP+ I K+LETL + + + L NL L L+ N+
Sbjct: 62 KLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNL 238
L P F L KL L L +N+L L L +L L N+ L
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 239 TSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSN 273
T L+ L L +N+ V F L+ + L N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 33 PSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92
P+ I L +E L + N+ L L L N L P +L L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 93 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIAN 152
+L L YN +L+SL P + + SL+ L + N
Sbjct: 137 YLSLGYN-------------------ELQSL-----------PKGVFDKLTSLKELRLYN 166
Query: 153 CSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSC 207
+ A L+ L TL L+ N+L F L+KL+ L L N +C
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 10/261 (3%)
Query: 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLG----IANCSISGNIPPAISNLSNLLTLVLE 175
+SLNF G P + + + N + LG I + IS + + +S + +L L+
Sbjct: 201 FQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMS-VESLNLQ 259
Query: 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCL 235
++ + TTF +LQ L L L G P + L+ L KLVL N F
Sbjct: 260 EHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISA 318
Query: 236 SNLTSLRFLYL-GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT--LSFDIGNLKVLLGI 292
+N SL LY+ G+ + + +L ++ LD S N + + S + NL L +
Sbjct: 319 ANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 293 NLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES-FDDLTSLEVMNLSNNKISGSI 351
NLS N G L+++DLA+ RL P+S F +L L+V+NL+ + S
Sbjct: 379 NLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSN 438
Query: 352 PKSMEKLFYLRELNLSFNELE 372
+ L LR LNL N +
Sbjct: 439 QHLLAGLPVLRHLNLKGNHFQ 459
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 147/345 (42%), Gaps = 21/345 (6%)
Query: 37 GLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96
GL +VE LNL +RFS ++ ++L L+L GL P + L L L L
Sbjct: 247 GLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGL-PSGMKGLNLLKKLVL 305
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSK--SLETLGIANCS 154
+ N+ AN L L GN L +G L K +L+TL +++
Sbjct: 306 SVNH-----FDQLCQISAANFPSLTHLYIRGNVKKLHL--GVGCLEKLGNLQTLDLSHND 358
Query: 155 ISGN--IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDE-L 211
I + + NLS+L TL L N+ G F +L+ L LAF +L + P
Sbjct: 359 IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPF 418
Query: 212 CHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271
+L L L L S L+ L LR L L N F + L+ + L+
Sbjct: 419 QNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL 478
Query: 272 SNLLVGTLSFD---IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328
G LS D +L + ++LS N+L+ D ++ LK + ++LA N + P
Sbjct: 479 ILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISP 537
Query: 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373
L+ +NLS+N + + ++ L + +E + ++LEG
Sbjct: 538 RLLPILSQQSTINLSHNPLDCTC-SNIHFLTWYKE---NLHKLEG 578
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 53/284 (18%)
Query: 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISN-----LSNLLTLVLEGNKLTGPIPTTFG 188
+P ++ N ++ LE S N P I N L NL L L ++ TF
Sbjct: 24 IPDTLPNTTEFLE--------FSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQ 75
Query: 189 RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG--SIPSCLSNLTSLRFLYL 246
+L L L N L+ L L L L+ S IP + NL +L LYL
Sbjct: 76 SHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIP--VHNLENLESLYL 133
Query: 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLK--VLLGINLSENNLS---- 300
GSN +S+ + +++ LDF +N + D+ +L+ + L +N + NN+
Sbjct: 134 GSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIEL 193
Query: 301 GDMPATI------GGLKSLQIMDLAYNRLEGQIPES-----FDDLT-------------- 335
G +TI GG +L ++ +N L+ +S F+D+
Sbjct: 194 GAFDSTIFQSLNFGGTPNLSVI---FNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCE 250
Query: 336 -SLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
S+E +NL ++ S + + L+EL+L+ L+G +PSG
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSG 293
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L FN + D L +L L++L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLEL 136
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L SN+ T + P L + LD SSN V +S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN-KVSDISVL 191
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 192 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 284
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 172 LTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 225 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 274
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 275 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 328
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 329 LQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L FN + D L +L L++L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLEL 136
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L SN+ T + P L + LD SSN V +S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN-KVSDISVL 191
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 192 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 284
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 172 LTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 225 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 274
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 275 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 328
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 329 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L FN + D L +L L++L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLEL 136
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L SN+ T + P L + LD SSN V +S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN-KVSDISVL 191
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 192 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 284
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 172 LTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 225 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 274
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 275 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 328
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 329 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%)
Query: 209 DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFL 268
DE L++L L N S P +NL +LR L L SNR + F L ++ L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 269 DFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328
D S N +V L + +L L + + +N+L GL SL+ + L L
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLS 367
E+ L L V+ L + I+ S ++L+ L+ L +S
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 3/258 (1%)
Query: 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAI-SNLSNLLTLV 173
A+ L L N + P + NL +L TLG+ + + IP + + LSNL L
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKL-IPLGVFTGLSNLTKLD 110
Query: 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS 233
+ NK+ + F L L+ L + N LV L+ L++L L +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293
LS+L L L L ++ +F RL + L+ S + T++ + L ++
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 294 LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353
++ NL+ + L L+ ++L+YN + +L L+ + L +++ P
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Query: 354 SMEKLFYLRELNLSFNEL 371
+ L YLR LN+S N+L
Sbjct: 291 AFRGLNYLRVLNVSGNQL 308
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 133/367 (36%), Gaps = 60/367 (16%)
Query: 46 LNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYN------ 99
L+L NR + L LEL N S + P NL NL LGL N
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 100 -------------NXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLE 146
+ + L+SL N L + L+ SLE
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLE 155
Query: 147 TLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGS 206
L + C+++ A+S+L L+ L L + +F RL +L+ L
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL---------- 205
Query: 207 CPDELCHLDRLDKLVLLGNKFSGSIPSCLS--NLTSLRFLYLGSNRFTSVIPSTFWRLKD 264
E+ H LD + P+CL NLTSL + T+V L
Sbjct: 206 ---EISHWPYLDTMT----------PNCLYGLNLTSLSITHCN---LTAVPYLAVRHLVY 249
Query: 265 ILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE 324
+ FL+ S N + + L L I L L+ P GL L++++++ N+L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 325 GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYL--RELNLSFNELE-----GEIPS 377
F + +LE + L +N ++ +L ++ R L+FN + E
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLACDC-----RLLWVFRRRWRLNFNRQQPTCATPEFVQ 364
Query: 378 GGIFANF 384
G F +F
Sbjct: 365 GKEFKDF 371
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372
+++DL NR++ + F LE + L+ N +S P + LF LR L L N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L FN + D L +L L++L L
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLEL 140
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L G N+ T + P L + LD SSN V +S
Sbjct: 141 SSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK-VSDISVL 194
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 195 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 247
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 248 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 287
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 175 LTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 228 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 277
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 278 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 331
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 332 LQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 209 DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFL 268
D + +L+ L ++ N+ + P L NLT L + + +N+ + P L ++ L
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 116
Query: 269 DFSSNLLVGTLSFDIGNLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAYNRLEG 325
+N + DI LK L +N LS N +S D+ A + GL SLQ + N++
Sbjct: 117 TLFNNQIT-----DIDPLKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFG-NQVTD 168
Query: 326 QIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
P +LT+LE +++S+NK+S + KL L L + N++ P G
Sbjct: 169 LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 217
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L FN + D L +L L++L L
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLEL 141
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L G N+ T + P L + LD SSN V +S
Sbjct: 142 SSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK-VSDISVL 195
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 196 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 248
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 288
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 176 LTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 229 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 278
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 279 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 209 DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFL 268
D + +L+ L ++ N+ + P L NLT L + + +N+ + P L ++ L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 269 DFSSNLLVGTLSFDIGNLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAYNRLEG 325
+N + DI LK L +N LS N +S D+ A + GL SLQ + N++
Sbjct: 118 TLFNNQIT-----DIDPLKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLSFG-NQVTD 169
Query: 326 QIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
P +LT+LE +++S+NK+S + KL L L + N++ P G
Sbjct: 170 LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 218
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L FN + D L +L L++L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL-FNNQITDI-DPLKNLTNLNRLEL 136
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L G N+ T + P L + LD SSN V +S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNK-VSDISVL 190
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 191 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 243
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 283
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 171 LTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 224 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 273
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 274 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 327
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 328 LQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 19/173 (10%)
Query: 209 DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFL 268
D + +L+ L ++ N+ + P L NLT L + + +N+ + P L ++ L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 269 DFSSNLLVGTLSFDIGNLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAYNRLEG 325
+N + DI LK L +N LS N +S D+ A + GL SLQ ++ N++
Sbjct: 113 TLFNNQIT-----DIDPLKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLNFG-NQVTD 164
Query: 326 QIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
P +LT+LE +++S+NK+S + KL L L + N++ P G
Sbjct: 165 LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 213
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
+ NL+ L+ +++ N++ P L L GL L N++ P L +L L++L L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF- 281
N S S LS LTSL+ L G N+ T + P L + LD SSN V +S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNK-VSDISVL 190
Query: 282 -DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
+ NL+ L+ N N +S P +G L +L + L N+L+ + LT+L +
Sbjct: 191 AKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 243
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
+L+NN+IS P + L L EL L N++ P G+ A
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 283
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLE---LGGNTFSGLIPDTIGNLRNLAWLGL 96
L T+E L+++ N+ S I+ +KLT LE N S + P +G L NL L L
Sbjct: 171 LTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N A+ L L+ N + P + L+K L L + IS
Sbjct: 224 NGN-------QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQIS 273
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
NI P ++ L+ L L L N+L P L+ L L L FN + P + L +
Sbjct: 274 -NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 327
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
L +L NK S S L+NLT++ +L G N+ + + P
Sbjct: 328 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 19/173 (10%)
Query: 209 DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFL 268
D + +L+ L ++ N+ + P L NLT L + + +N+ + P L ++ L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 269 DFSSNLLVGTLSFDIGNLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAYNRLEG 325
+N + DI LK L +N LS N +S D+ A + GL SLQ ++ N++
Sbjct: 113 TLFNNQIT-----DIDPLKNLTNLNRLELSSNTIS-DISA-LSGLTSLQQLNFG-NQVTD 164
Query: 326 QIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
P +LT+LE +++S+NK+S + KL L L + N++ P G
Sbjct: 165 LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 213
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%)
Query: 231 IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLL 290
+ S S+ T L L L N + + FW L +L L+ S N L S NL L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 291 GINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350
++LS N++ + GL +L+ + L N+L+ FD LTSL+ + L N S
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410
Query: 351 IPK 353
P+
Sbjct: 411 CPR 413
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 112/294 (38%), Gaps = 54/294 (18%)
Query: 145 LETLGIANCSISGNIPPA--ISNLSNLLTLVLEGNKLTGPIPTTFG-RLQKLQGLFLAFN 201
LE L + C++ G + L++L LVL N + P +F +++ L L FN
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 202 KLVGSCPDELCHLD-------RLDKLVLLG-NKFSGSIPSCLSNL--TSLRFLYLGSNRF 251
K+ C ++L + RL + L N++ C + TS+ L L N F
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 252 TSVIPSTFW--------------------------RLKD-------------ILFLDFSS 272
+ F+ KD + D S
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 273 NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFD 332
+ + L + L + L++N ++ GL L ++L+ N L F+
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Query: 333 DLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTA 386
+L LEV++LS N I +S L L+EL L N+L+ +P GIF T+
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD-GIFDRLTS 396
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 140 NLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199
NL K LE L ++ I + L NL L L+ N+L F RL LQ ++L
Sbjct: 345 NLDK-LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403
Query: 200 FNKLVGSCPDELCHLDRLDKLVLLGNK 226
N SCP R+D L NK
Sbjct: 404 TNPWDCSCP-------RIDYLSRWLNK 423
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 306 TIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
T GL SL I+ L YN+ +F+ L +LEV+ L+ + G++
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS--FD-IGNLKVLLGINL 294
L ++R+L LG N+ + S L ++ +L + N L + FD + NLK L+ L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---L 116
Query: 295 SENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKS 354
EN L L +L ++LA+N+L+ FD LT+L ++LS N++ S+P+
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175
Query: 355 M-EKLFYLRELNLSFNELEGEIPSGGIFANFTA 386
+ +KL L++L L N+L+ +P G+F T+
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPD-GVFDRLTS 206
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 213 HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS 272
+L + L L GNK S L LT+L +L L N+ S+ F +L ++ L
Sbjct: 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 273 NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES-F 331
N L L L +NL+ N L L +L +DL+YN+L+ +PE F
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVF 177
Query: 332 DDLTSLEVMNLSNNKISGSIPKSM-EKLFYLRELNLSFNELEGEIP 376
D LT L+ + L N++ S+P + ++L L+ + L N + P
Sbjct: 178 DKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%)
Query: 211 LCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270
L L L L+L GN+ LT+L+ L L N+ S+ F +L ++ +L+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330
+ N L L L ++LS N L L L+ + L N+L+
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Query: 331 FDDLTSLEVMNLSNNKISGSIP 352
FD LTSL+ + L +N + P
Sbjct: 201 FDRLTSLQYIWLHDNPWDCTCP 222
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLV 221
A+ L+NL L+L GN+L F +L L+ L L N+L S PD
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD------------ 126
Query: 222 LLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
LT+L +L L N+ S+ F +L ++ LD S N L
Sbjct: 127 -----------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328
L L + L +N L L SLQ + L N + P
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 207 CPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL 266
CP E LD +V NK +P + + LYL N+FT ++P K +
Sbjct: 4 CPTEC---TCLDTVVRCSNKGLKVLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLT 57
Query: 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326
+D S+N + + N+ LL + LS N L P T GLKSL+++ L N +
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SV 116
Query: 327 IPE-SFDDLTSLEVMNLSNNKI 347
+PE +F+DL++L + + N +
Sbjct: 117 VPEGAFNDLSALSHLAIGANPL 138
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293
C + T L + SN+ V+P R L+LD + LV ++ N K L I+
Sbjct: 4 CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK---ELSNYKHLTLID 60
Query: 294 LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353
LS N +S + + L + L+YNRL P +FD L SL +++L N IS
Sbjct: 61 LSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120
Query: 354 SMEKLFYLRELNLSFNEL 371
+ L L L + N L
Sbjct: 121 AFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 159 IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLD 218
+P +SN +L + L N+++ +F + +L L L++N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSN 249
L L GN S ++L++L L +G+N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 130 LDG----FLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPT 185
LDG +P + N K L + ++N IS + SN++ LLTL+L N+L P
Sbjct: 38 LDGNQFTLVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 186 TFGRLQKLQGLFLAFNKL 203
TF L+ L+ L L N +
Sbjct: 97 TFDGLKSLRLLSLHGNDI 114
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYN 99
V L L N+F+ +P ++N LTL++L N S L + N+ L L L+YN
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 231 IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLL 290
I SN+ F G+ + PS ++ L LDFS+NLL T+ + G+L L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPS---KISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 291 GINLSENNLS--GDMPATIGGLKSLQIMDL-----AYNRLEGQIPESFDDLT-------- 335
+ L N L + +KSLQ +D+ +Y+ +G + L+
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Query: 336 ----------SLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFT 385
++V++L +NKI SIPK + KL L+ELN++ N+L+ +P GIF T
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKS-VP-DGIFDRLT 468
Query: 386 A 386
+
Sbjct: 469 S 469
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 213 HLDRLDKLVLLGNKFS--GSIPSCLSNLTSLRFLYLGSNR--FTSVIPSTFWRLKDILFL 268
HL L+ L+L N+ I + + SL+ L + N + W K +L L
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSL 404
Query: 269 DFSSNLLVGTLSFDIG-NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327
+ SSN+L T+ + +KVL +L N + +P + L++LQ +++A N+L+ +
Sbjct: 405 NMSSNILTDTIFRCLPPRIKVL---DLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-V 459
Query: 328 PES-FDDLTSLEVMNLSNNKISGSIPKSMEKLFYL-RELNLSFNELEGEIPSGG 379
P+ FD LTSL+ + L N S P ++ YL R LN + + +G G
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWDCSCP----RIDYLSRWLNKNSQKEQGSAKCSG 509
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+N+S+N +S + I L L+I+ +++NR++ F LE ++LS+NK+ +
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---V 82
Query: 352 PKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTA 386
S L+ L+LSFN + +P F N +
Sbjct: 83 KISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQ 116
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 27/199 (13%)
Query: 33 PSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL--IPDTIGNLRN 90
PS+I L HL+ + N + T+ + + ++L L L N L I + +++
Sbjct: 320 PSKISPFL----HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375
Query: 91 LAWLGLAYNNXXXXXXXXXXXXXXANC---KKLRSLNFIGNPLDGFLPSSIGNLSKSLET 147
L L ++ N+ +C K L SLN N L + L ++
Sbjct: 376 LQQLDISQNSVSYDEKK-------GDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKV 425
Query: 148 LGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSC 207
L + + I IP + L L L + N+L F RL LQ ++L N SC
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 208 PDELCHLDRLDKLVLLGNK 226
P R+D L NK
Sbjct: 485 P-------RIDYLSRWLNK 496
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS-CLSNLTSLRFLY 245
F L L L L N+L +L +L +L L N SIPS + + SLR L
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLD 137
Query: 246 LGS-NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM- 303
LG R + + F L ++ +L NL + L DI NL L + L E LSG+
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYL----NLGMCNLK-DIPNLTAL--VRLEELELSGNRL 190
Query: 304 ----PATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSM-EKL 358
P + GL SL+ + L + ++ +FDDL SLE +NLS+N + S+P + L
Sbjct: 191 DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPL 249
Query: 359 FYLRELNLSFN 369
L ++L+ N
Sbjct: 250 HRLERVHLNHN 260
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 186 TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245
TF L+ L+ L L+ N + L L+ L L N+ + L+ LR L+
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 246 LGSNRFTSVIPSTFWRLKDILFLDF---SSNLLVGTLSFD-IGNLKVLLGINLSENNLSG 301
L +N S+ F R+ + LD + +F+ + NL+ L NL NL
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYL---NLGMCNLK- 169
Query: 302 DMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYL 361
D+P + L L+ ++L+ NRL+ P SF LTSL + L + +++ + + L L
Sbjct: 170 DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL 228
Query: 362 RELNLSFNEL 371
ELNLS N L
Sbjct: 229 EELNLSHNNL 238
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+NL EN++ T L+ L+I+ L+ N + +F+ L SL + L +N+++
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 352 PKSMEKLFYLRELNLSFNELEGEIPS 377
++ E L LREL L N +E IPS
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES-IPS 124
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS--FD-IGNLKVLLGINL 294
L ++R+L LG N+ + S L ++ +L + N L + FD + NLK L+ L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---L 116
Query: 295 SENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKS 354
EN L L +L + L +N+L+ FD LT+L ++L NN++ S+P+
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEG 175
Query: 355 M-EKLFYLRELNLSFNELEGEIPSGGIFANFTAETE 389
+ +KL L++L+L+ N+L+ +P G+F T+ T
Sbjct: 176 VFDKLTQLKQLSLNDNQLKS-VPD-GVFDRLTSLTH 209
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCP----DELCHLDRLDKLV 221
L+NL LVL N+L F +L L L+L N+L S P D+L +L RLD
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLD--- 163
Query: 222 LLGNKFSGSIPS-CLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
L N S+P LT L+ L L N+ SV F RL
Sbjct: 164 -LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRL 204
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 24/138 (17%)
Query: 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLV 221
A+ L+NL L+L GN+L F +L L+ L L N+L S PD
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD------------ 126
Query: 222 LLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
LT+L +LYL N+ S+ F +L ++ LD +N L
Sbjct: 127 -----------GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 282 DIGNLKVLLGINLSENNL 299
L L ++L++N L
Sbjct: 176 VFDKLTQLKQLSLNDNQL 193
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 213 HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS 272
+L + L L GNK S L LT+L +L L N+ S+ F +L ++ L
Sbjct: 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 273 NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES-F 331
N L L L + L N L L +L +DL N+L+ +PE F
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVF 177
Query: 332 DDLTSLEVMNLSNNKISGSIP 352
D LT L+ ++L++N++ S+P
Sbjct: 178 DKLTQLKQLSLNDNQLK-SVP 197
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 55/135 (40%)
Query: 211 LCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270
L L L L+L GN+ LT+L+ L L N+ S+ F +L ++ +L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330
N L L L ++L N L L L+ + L N+L+
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
Query: 331 FDDLTSLEVMNLSNN 345
FD LTSL + L NN
Sbjct: 201 FDRLTSLTHIWLLNN 215
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 186 TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS-CLSNLTSLRFL 244
F L L L L N+L +L +L +L L N SIPS + + SLR L
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRL 136
Query: 245 YLGS-NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303
LG R + + F L ++ +L NL + L DI NL L + L E LSG+
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYL----NLGMCNLK-DIPNLTAL--VRLEELELSGNR 189
Query: 304 -----PATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSM-EK 357
P + GL SL+ + L + ++ +FDDL SLE +NLS+N + S+P +
Sbjct: 190 LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTP 248
Query: 358 LFYLRELNLSFN 369
L L ++L+ N
Sbjct: 249 LHRLERVHLNHN 260
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 11/219 (5%)
Query: 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR 216
+P +I N L L+ N + TF L+ L+ L L+ N + L
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 217 LDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF---SSN 273
L+ L L N+ + L+ LR L+L +N S+ F R+ + LD
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 274 LLVGTLSFD-IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFD 332
+ +F+ + NL+ L NL NL D+P + L L+ ++L+ NRL+ P SF
Sbjct: 145 EYISEAAFEGLVNLRYL---NLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 333 DLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNEL 371
LTSL + L + +++ + + L L ELNLS N L
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+NL EN++ T L+ L+I+ L+ N + +F+ L SL + L +N+++
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 352 PKSMEKLFYLRELNLSFNELEGEIPS 377
++ E L LREL L N +E IPS
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES-IPS 124
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 276 VGTLSFD--IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333
+G +S D G L L+ + L N L+G P G +Q + L N+++ + F
Sbjct: 41 LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100
Query: 334 LTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369
L L+ +NL +N+IS +P S E L L LNL+ N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%)
Query: 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN 225
L +L+ L L+ N+LTG P F +Q L L NK+ L +L L L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 226 KFSGSIPSCLSNLTSLRFLYLGSNRF 251
+ S +P +L SL L L SN F
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYL 246
FGRL L L L N+L G P+ + +L L NK L L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 247 GSNRFTSVIPSTFWRLKDILFLDFSSN 273
N+ + V+P +F L + L+ +SN
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 308 GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLS 367
G L L ++L N+L G P +F+ + ++ + L NKI K L L+ LNL
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 368 FNELEGEIP 376
N++ +P
Sbjct: 111 DNQISCVMP 119
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 9/199 (4%)
Query: 186 TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245
TF LQ L L L P L L L KLVL NKF SN SL L
Sbjct: 273 TFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 246 L-GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT--LSFDIGNLKVLLGINLSENNLSGD 302
+ G+ + + L+++ LD S + + + + + NL L +NLS N
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 303 MPATIGGLKSLQIMDLAYNRLEGQIPES-FDDLTSLEVMNLSNNKISGSIPKSMEKLFYL 361
L+++DLA+ RL+ + +S F +L L+V+NLS++ + S + + L L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 362 RELNLSFNELEGEIPSGGI 380
+ LNL N P G I
Sbjct: 452 QHLNLQGNHF----PKGNI 466
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 108/280 (38%), Gaps = 45/280 (16%)
Query: 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISN-----LSNLLTLVLEGNKLTGPIPTTFG 188
+P ++ N ++ LE S N+ P I N L NL L L ++ TF
Sbjct: 27 IPGTLPNSTECLE--------FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78
Query: 189 RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248
+L L L N L+ L L L + S L N +L LYLGS
Sbjct: 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138
Query: 249 NRFTSV-IPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVL--LGINLSENNLSGDMPA 305
N +S+ +P F K + LDF +N + D+ +L+ L +NL+ N+++G P
Sbjct: 139 NHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197
Query: 306 TIG--------------------GLKSLQIMDLAYNRLEGQ-----IPESFDDLT--SLE 338
GLK+ I L E P F+ L S+E
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257
Query: 339 VMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
+NL + + L+EL+L+ L E+PSG
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSG 296
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 120/294 (40%), Gaps = 36/294 (12%)
Query: 36 IGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFS-GLIPDTIGNLRNLAWL 94
+GLS T++ L L+ N+F S +N LT L + GNT L + NL NL L
Sbjct: 298 VGLS--TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 95 GLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGN-PLDGFLPSSIGNLSKSLETLGIANC 153
L++++ N L+SLN N PL SL+T C
Sbjct: 356 DLSHDD---IETSDCCNLQLRNLSHLQSLNLSYNEPL-------------SLKTEAFKEC 399
Query: 154 SISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH 213
P + LL L K+ + F L L+ L L+ + L S
Sbjct: 400 -------PQLE----LLDLAFTRLKVKDA-QSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 214 LDRLDKLVLLGNKF-SGSIPSC--LSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270
L L L L GN F G+I L L L L L +S+ F LK + +D
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE 324
S N L + + +LK + +NL+ N++S +P+ + L + ++L N L+
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL 342
+G L++L+ LS +LS LK + +DL++NRL E+ L + +NL
Sbjct: 475 LGRLEILV---LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530
Query: 343 SNNKISGSIPKSMEKLFYLRELNLSFNELE 372
++N IS +P + L R +NL N L+
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLD 560
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 114/275 (41%), Gaps = 42/275 (15%)
Query: 151 ANCSISG-----------NIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199
+ CS SG ++P I S+ L LE NKL F +L +L L L+
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 200 FNKLV--GSCPDE------LCHLD-RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250
N L G C L +LD + ++ + + F G L L L F + +
Sbjct: 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-----LEQLEHLDFQHSNLKQ 115
Query: 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD-MPATIGG 309
+ S F L+++++LD S + L L + ++ N+ + +P
Sbjct: 116 MSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 310 LKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369
L++L +DL+ +LE P +F+ L+SL+V+N+S+N + L L+ L+ S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 370 ELE-------GEIPSGGIFAN-----FTAETEHKS 392
+ PS F N F EH+S
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 65 SKLTLLELGGNTFS-GLIPDTIGNLRNLAWLGLA 97
S L +L++ GN+F +PD LRNL +L L+
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 120 LRSLNFIGNPL-DGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
L L GN + FLP L ++L L ++ C + P A ++LS+L L + N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL-DRLDKLVLLGNKFSGSIP--SCL 235
+ L LQ L + N ++ S EL H L L L N F+ + S L
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 270
Query: 236 SNLTSLRFLYLGSNRFTSVIPS 257
+ R L + R PS
Sbjct: 271 QWIKDQRQLLVEVERMECATPS 292
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 11/213 (5%)
Query: 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLV 221
+ +L +L L L N + F L L L L N+L +L +L +L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 222 LLGNKFSGSIPS-CLSNLTSLRFLYLGS-NRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279
L N SIPS + + SLR L LG R + + F L ++ +L NL + L
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL----NLAMCNL 197
Query: 280 SFDIGNLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTS 336
+I NL L+ ++ LS N+LS P + GL LQ + + ++++ +FD+L S
Sbjct: 198 R-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 337 LEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369
L +NL++N ++ L +L ++L N
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+NL EN + + L+ L+I+ L+ N + +F+ L +L + L +N+++ +I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127
Query: 352 PK-SMEKLFYLRELNLSFNELEGEIPS 377
P + L L+EL L N +E IPS
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIES-IPS 153
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 21/239 (8%)
Query: 148 LGIANCS------ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFN 201
L + CS + ++PP + L L+ NK+T F L+ L L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 202 KLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR 261
K+ P L +L++L L N+ +P + +L+ L + N T V S F
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 262 LKDILFLDFSSNLL--VGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLA 319
L ++ ++ +N L G + +K L I +++ N++ +P G SL + L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD 200
Query: 320 YNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ S L +L + LS N IS S+ +LREL+L+ N+L ++P G
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 9/210 (4%)
Query: 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223
NL NL TL+L NK++ P F L KL+ L+L+ N+L P+++ L +L +
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVH 129
Query: 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTS--VIPSTFWRLKDILFLDFSSNLLVGTLSF 281
N+ + S + L + + LG+N S + F +K + ++ + +
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD---TNITTI 186
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMN 341
G L ++L N ++ A++ GL +L + L++N + S + L ++
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 342 LSNNKISGSIPKSMEKLFYLRELNLSFNEL 371
L+NNK+ +P + Y++ + L N +
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293
C +L ++ LG + +P D LD +N + D NLK L +
Sbjct: 29 CQCHLRVVQCSDLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 294 LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348
L N +S P L L+ + L+ N+L+ ++PE +L+ + + N+I+
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 21/239 (8%)
Query: 148 LGIANCS------ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFN 201
L + CS + ++PP + L L+ NK+T F L+ L L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 202 KLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR 261
K+ P L +L++L L N+ +P + +L+ L + N T V S F
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143
Query: 262 LKDILFLDFSSNLL--VGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLA 319
L ++ ++ +N L G + +K L I +++ N++ +P G SL + L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD 200
Query: 320 YNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ S L +L + LS N IS S+ +LREL+L+ N+L ++P G
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 9/210 (4%)
Query: 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223
NL NL TL+L NK++ P F L KL+ L+L+ N+L P+++ L +L +
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVH 129
Query: 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTS--VIPSTFWRLKDILFLDFSSNLLVGTLSF 281
N+ + S + L + + LG+N S + F +K + ++ + +
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD---TNITTI 186
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMN 341
G L ++L N ++ A++ GL +L + L++N + S + L ++
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 342 LSNNKISGSIPKSMEKLFYLRELNLSFNEL 371
L+NNK+ +P + Y++ + L N +
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293
C +L ++ LG + +P D LD +N + D NLK L +
Sbjct: 29 CQCHLRVVQCSDLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 294 LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348
L N +S P L L+ + L+ N+L+ ++PE +L+ + + N+I+
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%)
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297
LTSL LYLG N+ S+ F +L + +L+ S+N L + L L + L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352
L L L+ + L N+L+ FD LTSL+ + L +N + P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326
+LD +N L + L L + L N L L SL ++L+ N+L+
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 327 IPESFDDLTSLEVMNLSNNKISGSIPKSM-EKLFYLRELNLSFNELEGEIPSGGIFANFT 385
FD LT L+ + L+ N++ S+P + +KL L++L L N+L+ +P G+F T
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD-GVFDRLT 148
Query: 386 A 386
+
Sbjct: 149 S 149
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 213 HLDRLDKLVLLGNKFSGSIPSCLSN-LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271
L L +L L GNK S+P+ + N LTSL +L L +N+ S+ F +L + L +
Sbjct: 50 ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108
Query: 272 SNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328
+N L L L + L +N L L SLQ + L N + P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC-HLDRLDKLVLLG 224
L++L L L N+L F +L +L+ L L N+L S PD + L +L L L
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQ 133
Query: 225 NKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
N+ LTSL++++L N + P
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD-MPATIGGLKSLQI 315
S F L+++++LD S + L L + ++ N+ + +P L++L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 316 MDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSM-EKLFYLRELNLSFNELEGE 374
+DL+ +LE P +F+ L+SL+V+N+++N++ S+P + ++L L+++ L N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533
Query: 375 IPSGGIFANFTAETEHKSR 393
P + + + K +
Sbjct: 534 CPRIDYLSRWLNKNSQKEQ 552
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 25/117 (21%)
Query: 238 LTSLRFLYLGSNRFTS-VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSE 296
L+SL L + N F +P F L+++ FLD LS+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD------------------------LSQ 479
Query: 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353
L P L SLQ++++A N+L+ FD LTSL+ + L N S P+
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEG-QIPESFDDLTSLEVMNLSNNKISG 349
E NL+ IG LK+L+ +++A+N ++ ++PE F +LT+LE ++LS+NKI
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSV 254
+ HL L +L + N S +P SNLT+L L L SN+ S+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 120 LRSLNFIGNPL-DGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
L L GN + FLP L ++L L ++ C + P A ++LS+L L + N+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNK 226
L F RL LQ ++L N SCP R+D L NK
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNK 546
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 63/162 (38%), Gaps = 1/162 (0%)
Query: 145 LETLGIA-NCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
LE L ++ N + P L L TL L+ L P F L LQ L+L N L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 204 VGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
D L L L L GN+ S L SL L L NR V P F L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA 305
++ L +N L + + L+ L + L++N D A
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 242
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 85/227 (37%), Gaps = 26/227 (11%)
Query: 158 NIPPA-ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH-LD 215
++P A NL L L N L F L L+ L L+ N + S H L
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 216 RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLL 275
RL L L P L +L++LYL N ++ TF
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---------------- 148
Query: 276 VGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLT 335
D+GNL L L N +S GL SL + L NR+ P +F DL
Sbjct: 149 -----RDLGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 336 SLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
L + L N +S +++ L L+ L L+ N + + ++A
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 247
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 31/184 (16%)
Query: 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
++ L GN+ S + +L L+L SN + + F L + LD S N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 278 TLS----FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEG-------- 325
++ +G L L +L L P GL +LQ + L N L+
Sbjct: 94 SVDPATFHGLGRLHTL---HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 150
Query: 326 ---------------QIPE-SFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369
+PE +F L SL+ + L N+++ P + L L L L N
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 370 ELEG 373
L
Sbjct: 211 NLSA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 63/162 (38%), Gaps = 1/162 (0%)
Query: 145 LETLGIA-NCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
LE L ++ N + P L L TL L+ L P F L LQ L+L N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 204 VGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
D L L L L GN+ S L SL L L NR V P F L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA 305
++ L +N L + + L+ L + L++N D A
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 85/227 (37%), Gaps = 26/227 (11%)
Query: 158 NIPPA-ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH-LD 215
++P A NL L L N L F L L+ L L+ N + S H L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 216 RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLL 275
RL L L P L +L++LYL N ++ TF
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---------------- 149
Query: 276 VGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLT 335
D+GNL L L N +S GL SL + L NR+ P +F DL
Sbjct: 150 -----RDLGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 336 SLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFA 382
L + L N +S +++ L L+ L L+ N + + ++A
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 31/184 (16%)
Query: 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
++ L GN+ S + +L L+L SN + + F L + LD S N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 278 TLS----FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEG-------- 325
++ +G L L +L L P GL +LQ + L N L+
Sbjct: 95 SVDPATFHGLGRLHTL---HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 326 ---------------QIPE-SFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369
+PE +F L SL+ + L N+++ P + L L L L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 370 ELEG 373
L
Sbjct: 212 NLSA 215
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 121 RSLNFIGNPLDGFLPSSI-GNLSK-SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
+ ++ G LD +PS I + K L++ G+A S + L+ L L L+ N+
Sbjct: 17 KEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDA-----TFRGLTKLTWLNLDYNQ 70
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS-CLSN 237
L F L +L L LA N+L HL +LDKL L GN+ S+PS
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR 129
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLL 275
LT L+ L L +N+ S+ F +L ++ L S+N L
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
++L L+ AT GL L ++L YN+L+ FDDLT L + L+NN+++ S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 352 PKSM-EKLFYLRELNLSFNELEGEIPSGGIFANFTAETE 389
P + + L L +L L N+L+ +PS G+F T E
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKS-LPS-GVFDRLTKLKE 135
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 84/222 (37%), Gaps = 32/222 (14%)
Query: 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202
K ++ G + S+ IP L L+ L TF L KL L L +N+
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
L L L L L N+ + +LT L LYLG N+ S+ F RL
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 263 KDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA-TIGGLKSLQIMDLAYN 321
+ L ++N L +PA L +LQ + L+ N
Sbjct: 131 TKLKELRLNTNQLQS-------------------------IPAGAFDKLTNLQTLSLSTN 165
Query: 322 RLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRE 363
+L+ +FD L L+ + L N+ S +++ ++RE
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRE 207
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%)
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297
LT L +L L N+ ++ F L ++ L ++N L +L L + L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEK 357
L L L+ + L N+L+ +FD LT+L+ ++LS N++ + ++
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 358 LFYLRELNLSFNELE 372
L L+ + L N+ +
Sbjct: 178 LGKLQTITLFGNQFD 192
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXX 102
E L+L + ++ +KLT L L N L +L L LGLA N
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 103 XXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPA 162
+ +L L GN L LPS + + L+ L + + A
Sbjct: 97 SLPLGVFD-----HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
L+NL TL L N+L F RL KLQ + L N+
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 65/176 (36%), Gaps = 10/176 (5%)
Query: 56 TIPSSI-TNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXX 114
++PS I + KL L G T S T L L WL L YN
Sbjct: 28 SVPSGIPADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQLQTLSAGVFD---- 80
Query: 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVL 174
+ +L +L N L LP + + L+ L + + L+ L L L
Sbjct: 81 -DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS 230
N+L F +L LQ L L+ N+L L +L + L GN+F S
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 121 RSLNFIGNPLDGFLPSSIGNLSK--SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
+ ++ G LD +PS I ++ L++ G+A S + L+ L L L+ N+
Sbjct: 17 KEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDA-----TFRGLTKLTWLNLDYNQ 70
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS-CLSN 237
L F L +L L LA N+L HL +LDKL L GN+ S+PS
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR 129
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLL 275
LT L+ L L +N+ S+ F +L ++ L S+N L
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
++L L+ AT GL L ++L YN+L+ FDDLT L + L+NN+++ S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 352 PKSM-EKLFYLRELNLSFNELEGEIPSGGIFANFTAETE 389
P + + L L +L L N+L+ +PS G+F T E
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPS-GVFDRLTKLKE 135
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 32/222 (14%)
Query: 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202
K ++ G + S+ IP L L+ L TF L KL L L +N+
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
L L L L L N+ + +LT L LYLG N+ S+ F RL
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 263 KDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA-TIGGLKSLQIMDLAYN 321
+ L ++N L +PA L +LQ + L+ N
Sbjct: 131 TKLKELRLNTNQLQS-------------------------IPAGAFDKLTNLQTLSLSTN 165
Query: 322 RLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRE 363
+L+ +FD L L+ + L N+ S + + ++RE
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%)
Query: 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297
LT L +L L N+ ++ F L ++ L ++N L +L L + L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEK 357
L L L+ + L N+L+ +FD LT+L+ ++LS N++ + ++
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 358 LFYLRELNLSFNELE 372
L L+ + L N+ +
Sbjct: 178 LGKLQTITLFGNQFD 192
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXX 102
E L+L + ++ +KLT L L N L +L L LGLA N
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 103 XXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPA 162
+ +L L GN L LPS + + L+ L + + A
Sbjct: 97 SLPLGVFD-----HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
L+NL TL L N+L F RL KLQ + L N+
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 65/176 (36%), Gaps = 10/176 (5%)
Query: 56 TIPSSI-TNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXX 114
++PS I + KL L G T S T L L WL L YN
Sbjct: 28 SVPSGIPADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQLQTLSAGVFD---- 80
Query: 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVL 174
+ +L +L N L LP + + L+ L + + L+ L L L
Sbjct: 81 -DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS 230
N+L F +L LQ L L+ N+L L +L + L GN+F S
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 182 PIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCL--SNLT 239
P P++F L Q +F + + C L RL L+L N L N++
Sbjct: 350 PSPSSFTFLNFTQNVFT--DSVFQGCST----LKRLQTLILQRNGLKNFFKVALMTKNMS 403
Query: 240 SLRFLYLGSNRFTS-VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENN 298
SL L + N S T + IL L+ SSN+L G++ + +L ++ NN
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NN 460
Query: 299 LSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352
+P + L++LQ +++A N+L+ FD LTSL+ + L +N + P
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG--TLSFDIGNLKVLLG 291
C + +S FL N FT + LK + L N L ++ N+ L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407
Query: 292 INLSENNL-SGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350
+++S N+L S T +S+ +++L+ N L G + ++V++L NN+I S
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MS 464
Query: 351 IPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTA 386
IPK + L L+ELN++ N+L+ +P G+F T+
Sbjct: 465 IPKDVTHLQALQELNVASNQLKS-VP-DGVFDRLTS 498
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 118 KKLRSLNFIGNPLDGFLPSSI--GNLSKSLETLGIANCSI-SGNIPPAISNLSNLLTLVL 174
K+L++L N L F ++ N+S SLETL ++ S+ S + ++L L L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSC 234
N LTG + F L + N + S P ++ HL L +L + N+
Sbjct: 436 SSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 235 LSNLTSLRFLYLGSNRFTSVIP 256
LTSL++++L N + P
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 157/411 (38%), Gaps = 75/411 (18%)
Query: 34 SRIGLSLPT-VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92
+++ LPT + LNL N+ ++ T S+LT L++G NT S L P+ L L
Sbjct: 17 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 93 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIAN 152
L L +N A C L L+ + N + + K+L TL +++
Sbjct: 77 VLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSH 130
Query: 153 CSISG-------------------NIPPAISNL-------SNLLTLVLEGNKLTGPIPTT 186
+S N A+ + S+L L L N++ P
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 187 FGRLQKLQGLFLAFNKLVGSCPDELC----------------HLDRLDKLVLLGNKFSGS 230
F + +L GLFL +L S ++LC L LG K++
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250
Query: 231 IPSCLSN-------------LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
LS L L + +L N + + L ++ +L+ +
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 278 TLS---------FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL--AYNRLEGQ 326
++S F LK L +N+ +N++ G GL +L+ + L ++ L
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370
Query: 327 IPESFDDL--TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375
E+F L + L ++NL+ NKIS + L +L L+L NE+ E+
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 16/226 (7%)
Query: 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL--LGNKFSGSIPS 233
G +LTG + L+ + ++L++NK + + + L +L+L + K S PS
Sbjct: 418 GQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV---------GTLSFDIG 284
L +L L L +N ++ L+ + LD N L G + F G
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534
Query: 285 NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSN 344
L L +NL N L L+I+DL N L F++ SL+ +NL
Sbjct: 535 -LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 345 NKISGSIPKSMEKLFY-LRELNLSFNELEGEIPSGGIFANFTAETE 389
N I+ K F L EL++ FN + S F N+ ET
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 639
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 150 IANCS------ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
+A+CS + ++P +N+ L L N+L F R +L L + FN +
Sbjct: 8 VADCSHLKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 204 VGSCPDELCH-LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
P ELC L L L L N+ S + T+L L+L SN + + F +
Sbjct: 62 SKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 263 KDILFLDFSSNLLVGT 278
K+++ LD S N L T
Sbjct: 121 KNLITLDLSHNGLSST 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 157/411 (38%), Gaps = 75/411 (18%)
Query: 34 SRIGLSLPT-VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92
+++ LPT + LNL N+ ++ T S+LT L++G NT S L P+ L L
Sbjct: 27 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 93 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIAN 152
L L +N A C L L+ + N + + K+L TL +++
Sbjct: 87 VLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSH 140
Query: 153 CSISG-------------------NIPPAISNL-------SNLLTLVLEGNKLTGPIPTT 186
+S N A+ + S+L L L N++ P
Sbjct: 141 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 200
Query: 187 FGRLQKLQGLFLAFNKLVGSCPDELC----------------HLDRLDKLVLLGNKFSGS 230
F + +L GLFL +L S ++LC L LG K++
Sbjct: 201 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 260
Query: 231 IPSCLSN-------------LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277
LS L L + +L N + + L ++ +L+ +
Sbjct: 261 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 320
Query: 278 TLS---------FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL--AYNRLEGQ 326
++S F LK L +N+ +N++ G GL +L+ + L ++ L
Sbjct: 321 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 380
Query: 327 IPESFDDL--TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375
E+F L + L ++NL+ NKIS + L +L L+L NE+ E+
Sbjct: 381 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 431
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 16/226 (7%)
Query: 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL--LGNKFSGSIPS 233
G +LTG + L+ + ++L++NK + + + L +L+L + K S PS
Sbjct: 428 GQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 484
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV---------GTLSFDIG 284
L +L L L +N ++ L+ + LD N L G + F G
Sbjct: 485 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 544
Query: 285 NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSN 344
L L +NL N L L+I+DL N L F++ SL+ +NL
Sbjct: 545 -LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 603
Query: 345 NKISGSIPKSMEKLFY-LRELNLSFNELEGEIPSGGIFANFTAETE 389
N I+ K F L EL++ FN + S F N+ ET
Sbjct: 604 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 649
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 150 IANCS------ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
+A+CS + ++P +N+ L L N+L F R +L L + FN +
Sbjct: 18 VADCSHLKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 71
Query: 204 VGSCPDELCH-LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
P ELC L L L L N+ S + T+L L+L SN + + F +
Sbjct: 72 SKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 130
Query: 263 KDILFLDFSSNLLVGT 278
K+++ LD S N L T
Sbjct: 131 KNLITLDLSHNGLSST 146
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 134/348 (38%), Gaps = 50/348 (14%)
Query: 46 LNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXX 105
LNL N+ P++ T S+L +L+ G N+ S L P+ L L L L +N
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 106 XXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISN 165
C L L+ + N + I N N
Sbjct: 90 DQTFVF-----CTNLTELDLMSNSIH----------------------KIKSN---PFKN 119
Query: 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL--DRLDKLVLL 223
NL+ L L N L+ T +L+ LQ L LA NK++ +EL L L KL L
Sbjct: 120 QKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLS 179
Query: 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTF-WRLKD--ILFLDFSSNLLVGTLS 280
N P C + L L L + + + W L + I L ++N L+ T
Sbjct: 180 SNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSE 239
Query: 281 FDIGNLKV--LLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLE 338
LK L ++LS NNL + L SL+ + L YN ++ P SF L++L
Sbjct: 240 STFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR 299
Query: 339 VMNLSNNKISGSI-----PK----SMEKLFYLRELNLSFNELEGEIPS 377
++L S+ P S + L YL LN+ + IPS
Sbjct: 300 YLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMD----DNNIPS 343
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 155/404 (38%), Gaps = 59/404 (14%)
Query: 37 GLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96
GL + L+L+ N S + L L L N L P + L NL +L L
Sbjct: 244 GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Query: 97 --AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCS 154
A+ + + L+ L ++ N D +PS+ N L +L + S
Sbjct: 304 KRAFTKQSVSLASHPNIDDFS-FQWLKYLEYL-NMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Query: 155 ISGNIPPAISN-------LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSC 207
+ ++N S LLTL L N ++ TF L +L+ L L N++
Sbjct: 362 KTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKL 421
Query: 208 P-DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV--IPSTFWRLKD 264
E L + ++ L NK+ S + + SL+ L L +V PS F L++
Sbjct: 422 SGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRN 481
Query: 265 ILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS--------GDMPATIGGLKSLQIM 316
+ LD S+N + + L+ L ++ NNL+ G + GL L I+
Sbjct: 482 LTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHIL 541
Query: 317 DLAYNRLEGQIPES-------------------------FDDLTSLEVMNLSNNKISGSI 351
+L N L+ +IP FDD TSL +NL N I+
Sbjct: 542 NLESNGLD-EIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLIT--- 597
Query: 352 PKSMEKLFY------LRELNLSFNELEGEIPSGGIFANFTAETE 389
S+EK + L L++ FN + S F N+ +T
Sbjct: 598 --SVEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTH 639
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 149 GIANCS------ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202
+A+CS I ++P SN+ L L N+L PT F R +L L FN
Sbjct: 7 NVADCSHLKLTHIPDDLP------SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNS 60
Query: 203 LVGSCPDELCHLDRLDKLV-LLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR 261
+ P ELC + L K++ L N+ S T+L L L SN + + F
Sbjct: 61 ISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKN 119
Query: 262 LKDILFLDFSSNLLVGT 278
K+++ LD S N L T
Sbjct: 120 QKNLIKLDLSHNGLSST 136
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 442 TLRRFSYLELLQATDNFAENNIIGRGGFG 470
L+RFS EL A+DNF+ NI+GRGGFG
Sbjct: 24 QLKRFSLRELQVASDNFSNKNILGRGGFG 52
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 30/156 (19%)
Query: 225 NKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIG 284
+K S+P+ + T+ + LYL N+ T + P F L ++ L SN L
Sbjct: 28 SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--------- 76
Query: 285 NLKVLLGINLSENNLSGDMPATI-GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G +P + L L ++DL N+L FD L L+ + +
Sbjct: 77 ----------------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGG 379
NK++ +P+ +E+L +L L L N+L+ IP G
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGA 154
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 220 LVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279
L L N+ + P +L +L+ LYLGSN+ ++ F L + LD +N L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEV 339
S L L + + N L+ ++P I L L + L N+L+ +FD L+SL
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 340 MNLSNNKISGSIPKSMEKLFYLR 362
L N + YLR
Sbjct: 164 AYLFGNPWDCEC----RDIMYLR 182
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 157 GNIPPAI-SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLD 215
G +P + +L+ L L L N+LT F RL L+ LF+ NKL P + L
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 216 RLDKLVLLGNKFSGSIPS-CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFL 268
L L L N+ SIP L+SL YL N + +DI++L
Sbjct: 136 HLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC-------ECRDIMYL 181
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 133/338 (39%), Gaps = 56/338 (16%)
Query: 34 SRIGLSLPT-VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92
+++ LPT + LNL N+ ++ T S+LT L++G NT S L P+ L L
Sbjct: 22 TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 93 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIAN 152
L L +N A C L L+ + N +
Sbjct: 82 VLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQ--------------------- 115
Query: 153 CSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC 212
I N P + NL+TL L N L+ T +L+ LQ L L+ NK+ +EL
Sbjct: 116 -KIKNN--PFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 171
Query: 213 HL--DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270
L KL L N+ P C + L L+L + + PS
Sbjct: 172 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN---VQLGPS------------- 215
Query: 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLK--SLQIMDLAYNRLEGQIP 328
L L ++ N + ++LS + LS T GLK +L ++DL+YN L
Sbjct: 216 ----LTEKLCLELANTSI-RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNL 366
+SF L LE L N I S+ LF +R LNL
Sbjct: 271 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 16/226 (7%)
Query: 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL--LGNKFSGSIPS 233
G +LTG + L+ + ++L++NK + + + L +L+L + K S PS
Sbjct: 423 GQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 479
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV---------GTLSFDIG 284
L +L L L +N ++ L+ + LD N L G + F G
Sbjct: 480 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 539
Query: 285 NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSN 344
L L +NL N L L+I+DL N L F++ SL+ +NL
Sbjct: 540 -LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 598
Query: 345 NKISGSIPKSMEKLFY-LRELNLSFNELEGEIPSGGIFANFTAETE 389
N I+ K F L EL++ FN + S F N+ ET
Sbjct: 599 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 644
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 150 IANCS------ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
+A+CS + ++P +N+ L L N+L F R +L L + FN +
Sbjct: 13 VADCSHLKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 66
Query: 204 VGSCPDELCH-LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
P ELC L L L L N+ S + T+L L+L SN + + F +
Sbjct: 67 SKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 125
Query: 263 KDILFLDFSSNLLVGT 278
K+++ LD S N L T
Sbjct: 126 KNLITLDLSHNGLSST 141
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 206 SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPST--FWRLK 263
+CP E C + V N+ IP + T+ L L +N FT V+ +T F +L
Sbjct: 4 ACP-EKCRCE--GTTVDCSNQKLNKIPEHIPQYTAE--LRLNNNEFT-VLEATGIFKKLP 57
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAY 320
+ ++FS+N + + G + G+N L+ N L GL+SL+ + L
Sbjct: 58 QLRKINFSNNKIT---DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 321 NRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNL 366
NR+ +SF L+S+ +++L +N+I+ P + + L L LNL
Sbjct: 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 442 TLRRFSYLELLQATDNFAENNIIGRGGFG 470
L+RFS EL A+DNF NI+GRGGFG
Sbjct: 16 QLKRFSLRELQVASDNFXNKNILGRGGFG 44
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
+ HL L +L + N S +P SNLT+L L L SN+ S+ + L
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY--N 321
+ L+ S +L + ++F G K +++ +LA N
Sbjct: 176 QMPLLNLSLDLSLNPMNF-----------------------IQPGAFKEIRLKELALDTN 212
Query: 322 RLEGQIPES-FDDLTSLEVMNLSNNKISGSIPK 353
+L+ +P+ FD LTSL+ + L N S P+
Sbjct: 213 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
+ HL L +L + N S +P SNLT+L L L SN+ S+ + L
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY--N 321
+ L+ S +L + ++F G K +++ +LA N
Sbjct: 175 QMPLLNLSLDLSLNPMNF-----------------------IQPGAFKEIRLKELALDTN 211
Query: 322 RLEGQIPES-FDDLTSLEVMNLSNNKISGSIPK 353
+L+ +P+ FD LTSL+ + L N S P+
Sbjct: 212 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
+ HL L +L + N S +P SNLT+L L L SN+ S+ + L
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY--N 321
+ L+ S +L + ++F G K +++ +LA N
Sbjct: 175 QMPLLNLSLDLSLNPMNF-----------------------IQPGAFKEIRLKELALDTN 211
Query: 322 RLEGQIPES-FDDLTSLEVMNLSNNKISGSIPK 353
+L+ +P+ FD LTSL+ + L N S P+
Sbjct: 212 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
+ HL L +L + N S +P SNLT+L L L SN+ S+ + L
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY--N 321
+ L+ S +L + ++F G K +++ +LA N
Sbjct: 174 QMPLLNLSLDLSLNPMNF-----------------------IQPGAFKEIRLKELALDTN 210
Query: 322 RLEGQIPES-FDDLTSLEVMNLSNNKISGSIPK 353
+L+ +P+ FD LTSL+ + L N S P+
Sbjct: 211 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 34/260 (13%)
Query: 145 LETLGIANCSISGNIPPA--ISNLSNLLTLVLEGNKLTGPIPTTFG-RLQKLQGLFLAFN 201
LE L + C++ G + L++L LVL N + P +F +++ L L FN
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 202 KLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR 261
K+ C ++L L G F+ S ++ L + +LG + + +T
Sbjct: 165 KVKSICEEDL--------LNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNT--- 212
Query: 262 LKDILFLDFSSNLLVGTLS---FD-IGNLKVL---------LGINLSENNLSGDMPATIG 308
I LD S N +++ FD I K+ +G + N T
Sbjct: 213 --SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 309 GLKS--LQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNL 366
GL++ ++ DL+ +++ + F T LE + L+ N+I+ + L +L+EL L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL 330
Query: 367 SFNELEGEIPSGGIFANFTA 386
N+L+ +P GIF T+
Sbjct: 331 DTNQLKS-VPD-GIFDRLTS 348
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
LE L +A I+ A L++L L L+ N+L F RL LQ ++L N
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 360
Query: 205 GSCPDELCHLDRLDKLVLLGNK 226
SCP R+D L NK
Sbjct: 361 CSCP-------RIDYLSRWLNK 375
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 306 TIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
T GL SL I+ L YN+ +F+ L +LEV+ L+ + G++
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEG-QIPESFDDLTSLEVMNLSNNKISG 349
E NL+ IG LK+L+ +++A+N ++ ++PE F +LT+LE ++LS+NKI
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSV 254
+ HL L +L + N S +P SNLT+L L L SN+ S+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD-MPATIGGLKSLQI 315
S F L+++++LD S + L L + ++ N+ + +P L++L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 316 MDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE--- 372
+DL+ +LE P +F+ L+SL+V+N+S+N + L L+ L+ S N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 373 ----GEIPSGGIFAN-----FTAETEHKS 392
PS F N F EH+S
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCEHQS 563
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 120 LRSLNFIGNPL-DGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
L L GN + FLP L ++L L ++ C + P A ++LS+L L + N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL-DRLDKLVLLGNKFSGSIP--SCL 235
+ L LQ L + N ++ S EL H L L L N F+ + S L
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565
Query: 236 SNLTSLRFLYLGSNRFTSVIPS 257
+ R L + R PS
Sbjct: 566 QWIKDQRQLLVEVERMECATPS 587
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSV 254
+ HL L +L + N S +P SNLT+L L L SN+ S+
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEG-QIPESFDDLTSLEVMNLSNNKISG 349
E NL+ IG LK+L+ +++A+N ++ ++PE F +LT+LE ++LS+NKI
Sbjct: 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD-MPATIGGLKSLQI 315
S F L+++++LD S + L L + ++ N+ + +P L++L
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 316 MDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE--- 372
+DL+ +LE P +F+ L+SL+V+N+S+N + L L+ L+ S N +
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 373 ----GEIPSGGIFAN-----FTAETEHKS 392
PS F N F EH+S
Sbjct: 559 KQELQHFPSSLAFLNLTQNDFACTCEHQS 587
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 120 LRSLNFIGNPL-DGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178
L L GN + FLP L ++L L ++ C + P A ++LS+L L + N
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL-DRLDKLVLLGNKFSGSIP--SCL 235
+ L LQ L + N ++ S EL H L L L N F+ + S L
Sbjct: 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589
Query: 236 SNLTSLRFLYLGSNRFTSVIPS 257
+ R L + R PS
Sbjct: 590 QWIKDQRQLLVEVERMECATPS 611
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEG-QIPESFDDLTSLEVMNLSNNKISG 349
E NL+ IG LK+L+ +++A+N ++ ++PE F +LT+LE ++LS+NKI
Sbjct: 111 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV 204
L+ L ++ C I A +LS+L TL+L GN + F L LQ L L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 205 GSCPDELCHLDRLDKLVLLGNKF-SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK 263
+ HL L +L + N S +P SNLT+L L L SN+ S+ + L
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
Query: 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY--N 321
+ L+ S +L + ++F G K +++ +LA N
Sbjct: 176 QMPLLNLSLDLSLNPMNF-----------------------IQPGAFKEIRLKELALDTN 212
Query: 322 RLEGQIPES-FDDLTSLEVMNLSNNKISGSIPK 353
+L+ +P+ FD LTSL+ + L N S P+
Sbjct: 213 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 146/360 (40%), Gaps = 36/360 (10%)
Query: 37 GLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96
GL +VE +NL +RFS S+ +++ L+L +GL P I + +L L L
Sbjct: 249 GLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVL 307
Query: 97 AYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156
N+ A+ LR L GN L + ++L+ L +++ I
Sbjct: 308 NANSFDQLCQINA-----ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIE 362
Query: 157 GN--IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDE-LCH 213
+ + NL +L L L N+ G F +L+ L +AF L P +
Sbjct: 363 ASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQN 422
Query: 214 LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSN 273
L L L L S L+ L LR L L N F S +N
Sbjct: 423 LHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS-------------KTN 469
Query: 274 LLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333
LL +G+L++L+ LS NL GL+++ +DL++N L G +S D
Sbjct: 470 LLQM-----VGSLEILI---LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG---DSMDA 518
Query: 334 LTSLE--VMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAETEHK 391
L+ L+ +N+++N I P + L +NLS N L+ S F + E HK
Sbjct: 519 LSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTC-SNIHFITWYKENLHK 577
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 107/280 (38%), Gaps = 45/280 (16%)
Query: 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISN-----LSNLLTLVLEGNKLTGPIPTTFG 188
+P ++ N ++ LE S N P I N L NL+ L L ++ TF
Sbjct: 26 IPDTLPNTTEVLE--------FSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQ 77
Query: 189 RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248
+L + L N L+ L L L L S + NL +L L+LGS
Sbjct: 78 SHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGS 137
Query: 249 NRFTSV-IPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVL--LGINLSENNLSGDMPA 305
N +S+ +P F +++ LDF +N + D +L+ L +N + N++ G P
Sbjct: 138 NHISSINLPENF-PTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPG 196
Query: 306 T--------------------IGGLKSLQIMDLAYNRLEGQIPESFDDLT-------SLE 338
GL++ + L E + T S+E
Sbjct: 197 AFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVE 256
Query: 339 VMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
+NL ++ S + ++EL+L+ L G +PSG
Sbjct: 257 SINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSG 295
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 27/209 (12%)
Query: 186 TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS-CLSNLTSLRFL 244
TF L L+ L L N + L L+ L L N + IPS L+ LR L
Sbjct: 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152
Query: 245 YLGSNRFTSVIPSTFWRLKDILFLDF---------SSNLLVGTLSF-----------DIG 284
+L +N S+ F R+ ++ LD S G + D+
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 285 NLKVLLGIN---LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMN 341
NL L+G+ +S N+ P + GL SL+ + + +++ +FD L SL +N
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272
Query: 342 LSNNKISGSIPKSM-EKLFYLRELNLSFN 369
L++N +S S+P + L YL EL+L N
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+NL ENN+ T L L+++ L N + +F+ L SL + L +N ++
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 352 PKSMEKLFYLRELNLSFNELEGEIPS 377
+ E L LREL L N +E IPS
Sbjct: 140 SGAFEYLSKLRELWLRNNPIES-IPS 164
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+N E +L+ +PA I + Q++ L N++ P FD LT L +NL+ N+++
Sbjct: 24 VNCQERSLAS-VPAGIP--TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALP 80
Query: 352 PKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAETE 389
+KL L L L N+L+ IP G+F N + T
Sbjct: 81 VGVFDKLTKLTHLALHINQLK-SIPM-GVFDNLKSLTH 116
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 40/218 (18%)
Query: 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN 225
L +L LVL NK++ F L+KLQ L+++ N LV P+
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN---------------- 120
Query: 226 KFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGN 285
+PS SL L + NR V F L+++ ++ N L + F+ G
Sbjct: 121 -----LPS------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-GFEPGA 168
Query: 286 LKVLL--GINLSENNLSG---DMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVM 340
L + +SE L+G D+P T+ L L +N+++ E + L +
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLPETLNELH------LDHNKIQAIELEDLLRYSKLYRL 222
Query: 341 NLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
L +N+I S+ L LREL+L N+L +P+G
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAG 259
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 120 LRSLNFI---GNPLD--GFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVL 174
LR++N I GNPL+ GF P + L L L I+ ++G IP + N L L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLK--LNYLRISEAKLTG-IPKDLPETLN--ELHL 200
Query: 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSC 234
+ NK+ R KL L L N++ L L L +L L NK S +P+
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 235 LSNLTSLRFLYLGSNRFTSV 254
L +L L+ +YL +N T V
Sbjct: 260 LPDLKLLQVVYLHTNNITKV 279
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 107/270 (39%), Gaps = 42/270 (15%)
Query: 56 TIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXA 115
+P I+ + TLL+L N S L D L++L L L N +
Sbjct: 47 AVPKEISPDT--TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-----S 99
Query: 116 NCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175
+KL+ L N L P NL SL L I + I S L N+ + +
Sbjct: 100 PLRKLQKLYISKNHLVEIPP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155
Query: 176 GNKL--TGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPS 233
GN L +G P F L KL L ++ KL G P +L + L++L L NK
Sbjct: 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELE 211
Query: 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293
L + L L LG N+ + N G+LSF L L ++
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMI-----------------EN---GSLSF----LPTLRELH 247
Query: 294 LSENNLSGDMPATIGGLKSLQIMDLAYNRL 323
L N LS +PA + LK LQ++ L N +
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 86/227 (37%), Gaps = 31/227 (13%)
Query: 51 NRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXX 110
NR S +S + LT+L L N +G+ L L L L+ N
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN----------- 89
Query: 111 XXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170
+LR ++ P++ L L TL + C + P L+ L
Sbjct: 90 -------AQLRVVD----------PTTFRGLGH-LHTLHLDRCGLQELGPGLFRGLAALQ 131
Query: 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH-LDRLDKLVLLGNKFSG 229
L L+ N L TF L L LFL N+ + S P+ L LD+L+L N +
Sbjct: 132 YLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSVPEHAFRGLHSLDRLLLHQNHVAR 190
Query: 230 SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV 276
P +L L LYL +N + + L+ + +L + N V
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWV 237
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 26/246 (10%)
Query: 133 FLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGN-KLTGPIPTTFGRLQ 191
++P++ ++L L + + +++G A + L+ L L L N +L PTTF L
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 192 KLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRF 251
L L HLDR L LG P L +L++LYL N
Sbjct: 105 HLHTL----------------HLDRC-GLQELG-------PGLFRGLAALQYLYLQDNNL 140
Query: 252 TSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLK 311
++ +TF L ++ L N + L L + L +N+++ P L
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 312 SLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNEL 371
L + L N L E L SL+ + L++N ++ +L++ S +E+
Sbjct: 201 RLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEV 259
Query: 372 EGEIPS 377
+P
Sbjct: 260 PCNLPQ 265
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 25/179 (13%)
Query: 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV- 276
++ L GN+ S + + +L L+L SN + + F L + LD S N +
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 277 -------------GTLSFDIGNLK-----------VLLGINLSENNLSGDMPATIGGLKS 312
TL D L+ L + L +NNL T L +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 313 LQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNEL 371
L + L NR+ +F L SL+ + L N ++ P + L L L L N L
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 19/263 (7%)
Query: 128 NPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTF 187
NPL S N S+ L+ L ++ C I A L +L L+L GN + P +F
Sbjct: 42 NPLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100
Query: 188 GRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN-KFSGSIPSCLSNLTSLRFLYL 246
L L+ L KL + L L KL + N S +P+ SNLT+L + L
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160
Query: 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPAT 306
N ++ + L++ ++ S ++ + + F I + + GI L E L G+ ++
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQD-QAFQGIKLHELTLRGNFNSS 218
Query: 307 IGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL--FYLREL 364
LQ +LA + I F D +LE+ P ME L + E
Sbjct: 219 NIMKTCLQ--NLAGLHVHRLILGEFKDERNLEIFE----------PSIMEGLCDVTIDEF 266
Query: 365 NLSF-NELEGEIPSGGIFANFTA 386
L++ N+ +I AN +A
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSA 289
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 213 HLD-RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271
HLD + +++ F G L L L F + R T S F L+ +L+LD S
Sbjct: 380 HLDLSFNGAIIMSANFMG-----LEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDIS 432
Query: 272 SNLLVGTLSFD--------IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRL 323
+ FD + LK + G + +N LS +L +DL+ +L
Sbjct: 433 YT--NTKIDFDGIFLGLTSLNTLK-MAGNSFKDNTLSN----VFANTTNLTFLDLSKCQL 485
Query: 324 EGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFAN 383
E FD L L+++N+S+N + +L+ L L+ SFN +E S GI +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET---SKGILQH 542
Query: 384 F 384
F
Sbjct: 543 F 543
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 141/390 (36%), Gaps = 80/390 (20%)
Query: 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNX 101
T + ++ L++ IPSS N ++L N L + N L WL L+
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKN------IDLSFNPLKILKSYSFSNFSELQWLDLS---- 64
Query: 102 XXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSK------------------ 143
L +L GNP+ F P S L+
Sbjct: 65 -RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123
Query: 144 -----SLETLGIANCSI-SGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQ--- 194
+L+ L +A+ I S +P SNL+NL+ + L N + T LQ L+
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENP 180
Query: 195 ----GLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSI-PSCLSNLTSLRFLYLGSN 249
L ++ N + D+ +L +L L GN S +I +CL NL L L
Sbjct: 181 QVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 250 RFTS------VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSG-- 301
F PS L D+ +F L T F +K N+S +L+G
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFR---LTYTNDFSDDIVKFHCLANVSAMSLAGVS 296
Query: 302 -----DMPATIGG---------LKSLQIMDLAYNRL------EGQIPESFDDLTSLEVMN 341
D+P LK +DL + + +G I L SL ++
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356
Query: 342 LSNNKISGSIPKSMEKL--FYLRELNLSFN 369
LS N +S S S L LR L+LSFN
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 268 LDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327
+D S N L S+ N L ++LS + GL L + L N ++
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 328 PESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG-EIPSGGIFANFT 385
P SF LTSLE + K++ + +L L++LN++ N + ++P F+N T
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLT 153
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 19/263 (7%)
Query: 128 NPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTF 187
NPL S N S+ L+ L ++ C I A L +L L+L GN + P +F
Sbjct: 37 NPLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 95
Query: 188 GRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN-KFSGSIPSCLSNLTSLRFLYL 246
L L+ L KL + L L KL + N S +P+ SNLT+L + L
Sbjct: 96 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 155
Query: 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPAT 306
N ++ + L++ ++ S ++ + + F I + + GI L E L G+ ++
Sbjct: 156 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQD-QAFQGIKLHELTLRGNFNSS 213
Query: 307 IGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL--FYLREL 364
LQ +LA + I F D +LE+ P ME L + E
Sbjct: 214 NIMKTCLQ--NLAGLHVHRLILGEFKDERNLEIFE----------PSIMEGLCDVTIDEF 261
Query: 365 NLSF-NELEGEIPSGGIFANFTA 386
L++ N+ +I AN +A
Sbjct: 262 RLTYTNDFSDDIVKFHCLANVSA 284
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 213 HLD-RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271
HLD + +++ F G L L L F + R T S F L+ +L+LD S
Sbjct: 375 HLDLSFNGAIIMSANFMG-----LEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDIS 427
Query: 272 SNLLVGTLSFD--------IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRL 323
+ FD + LK + G + +N LS +L +DL+ +L
Sbjct: 428 YT--NTKIDFDGIFLGLTSLNTLK-MAGNSFKDNTLSN----VFANTTNLTFLDLSKCQL 480
Query: 324 EGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFAN 383
E FD L L+++N+S+N + +L+ L L+ SFN +E S GI +
Sbjct: 481 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET---SKGILQH 537
Query: 384 F 384
F
Sbjct: 538 F 538
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 141/390 (36%), Gaps = 80/390 (20%)
Query: 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNX 101
T + ++ L++ IPSS N ++L N L + N L WL L+
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKN------IDLSFNPLKILKSYSFSNFSELQWLDLS---- 59
Query: 102 XXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSK------------------ 143
L +L GNP+ F P S L+
Sbjct: 60 -RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 118
Query: 144 -----SLETLGIANCSI-SGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQ--- 194
+L+ L +A+ I S +P SNL+NL+ + L N + T LQ L+
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENP 175
Query: 195 ----GLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSI-PSCLSNLTSLRFLYLGSN 249
L ++ N + D+ +L +L L GN S +I +CL NL L L
Sbjct: 176 QVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 234
Query: 250 RFTS------VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSG-- 301
F PS L D+ +F L T F +K N+S +L+G
Sbjct: 235 EFKDERNLEIFEPSIMEGLCDVTIDEFR---LTYTNDFSDDIVKFHCLANVSAMSLAGVS 291
Query: 302 -----DMPATIGG---------LKSLQIMDLAYNRL------EGQIPESFDDLTSLEVMN 341
D+P LK +DL + + +G I L SL ++
Sbjct: 292 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 351
Query: 342 LSNNKISGSIPKSMEKL--FYLRELNLSFN 369
LS N +S S S L LR L+LSFN
Sbjct: 352 LSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 268 LDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327
+D S N L S+ N L ++LS + GL L + L N ++
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 328 PESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG-EIPSGGIFANFT 385
P SF LTSLE + K++ + +L L++LN++ N + ++P F+N T
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLT 148
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAET 388
E+F +L +L +++L ++KI P + + LF+L EL L F L + G F N A T
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 389 E 389
Sbjct: 127 R 127
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 79/335 (23%)
Query: 34 SRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93
SR+ +L ++ LNLA N+ + + L +L L N L L +A+
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 94 LGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLD--GFLPSSIGNLSKSLETLGIA 151
+ L N+ +KL++L+ N L F+PS I
Sbjct: 343 IDLQKNHIAIIQDQTFKFL-----EKLQTLDLRDNALTTIHFIPS-------------IP 384
Query: 152 NCSISGN---IPPAISNLSNLLTLVLEGNKLTG-PIPTTFGRLQKLQGLFLAFNKLVGSC 207
+ +SGN P I+ +NL+ L N+L I R+ LQ L L N+ SC
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHL--SENRLENLDILYFLLRVPHLQILILNQNRF-SSC 441
Query: 208 -----PDELCHLDRLDKLVLLGN---KFSGSIPSC---LSNLTSLRFLYLGSNRFTSVIP 256
P E L++L LG + + C L+ L+ LYL N S+ P
Sbjct: 442 SGDQTPSENPSLEQL----FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497
Query: 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS----GDMPATIGGLKS 312
F +L L G++L+ N L+ D+PA +
Sbjct: 498 GVF------------------------SHLTALRGLSLNSNRLTVLSHNDLPA------N 527
Query: 313 LQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKI 347
L+I+D++ N+L P+ F SL V+++++NK
Sbjct: 528 LEILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 268 LDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327
LD S + S LK L +NL+ N ++ GL +LQ+++L+YN L
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 328 PESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNEL 371
+F L + ++L N I+ ++ + L L+ L+L N L
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 239 TSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLL---VGTLSFDIGNLKVLLGINLS 295
+S+R L L S+ F LKD+ L+ + N + + + NL+VL NLS
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL---NLS 322
Query: 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISG-----S 350
N L + GL + +DL N + ++F L L+ ++L +N ++ S
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
Query: 351 IPK---SMEKLFYLRELNLSFN 369
IP S KL L ++NL+ N
Sbjct: 383 IPDIFLSGNKLVTLPKINLTAN 404
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYN 99
LP + LNL+ N+ + P I +T L L GN + + P + NL+NL WL L N
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 100 NXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNI 159
+ + ++ I + LP LE+L + N I+
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDINGLV--HLP--------QLESLYLGNNKITDIT 170
Query: 160 PPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
+S L+ L TL LE N+++ +P L KLQ L+L+ N +
Sbjct: 171 --VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203
+L +L ++N I+ +I P I L N+ L L GNKLT P L+ L LFL NK+
Sbjct: 67 NLTSLNLSNNQIT-DISP-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 122
Query: 204 VGSCPDELCHLDRLDKLVLLGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
L L KL L + +G S + L +L L LYLG+N+ T + + RL
Sbjct: 123 KDLS-----SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRL 175
Query: 263 KDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L N + + + L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 176 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 227
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373
Q++ L NR+ P FD LT L ++L NN+++ +KL L +L+L+ N+L+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 374 EIPSGGIFANFTAETE 389
IP G F N + T
Sbjct: 92 SIPRGA-FDNLRSLTH 106
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 239 TSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENN 298
T+ + LYL NR T + P F RL + LD +N L + L L ++L++N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 299 LSGDMPATIGGLKSL 313
L L+SL
Sbjct: 90 LKSIPRGAFDNLRSL 104
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 33/238 (13%)
Query: 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKL 193
LP+++ + + +E L + + I A + + L + N + P F + L
Sbjct: 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119
Query: 194 QGLFLAFNKLVGSCPDELCH-LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFT 252
L L N L S P + H +L L + N TSL+ L L SNR T
Sbjct: 120 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 253 SV----IPSTFWRLKDILFLDFSSNLLVGTLSFDIG---------NLKVLLG-------- 291
V IPS F + S NLL TL+ I ++ V+ G
Sbjct: 179 HVDLSLIPSLF-------HANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTI 230
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISG 349
+ L NNL+ A + L +DL+YN LE + F + LE + +SNN++
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKL 193
LP+SI NL ++L++L I N +S + PAI +L L L L G P FG L
Sbjct: 198 LPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 194 QGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTS 240
+ L L + + P ++ L +L+KL L G +PS ++ L +
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 292 INLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351
+ L N L L L + L+ N+++ FD LT L ++ L NK+ S+
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91
Query: 352 PKSM-EKLFYLRELNLSFNELEGEIPSGGIFANFTA 386
P + +KL L+EL L N+L+ +P GIF T+
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKS-VPD-GIFDRLTS 125
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 239 TSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENN 298
+S L L SN+ S+ F +L + L S N + L L + L EN
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 299 LSGDMPATIGGLKSLQIMDLAYNRLEGQIPES-FDDLTSLEVMNLSNNKISGSIPKSMEK 357
L L L+ + L N+L+ +P+ FD LTSL+ + L N S P +
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP----R 142
Query: 358 LFYL-RELNLSFNELEGEIPSGG 379
+ YL R LN + + +G G
Sbjct: 143 IDYLSRWLNKNSQKEQGSAKCSG 165
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 31/235 (13%)
Query: 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKL 193
LP+++ + + +E L + + I A + + L + N + P F + L
Sbjct: 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125
Query: 194 QGLFLAFNKLVGSCPDELCH-LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFT 252
L L N L S P + H +L L + N TSL+ L L SNR T
Sbjct: 126 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 253 SV----IPSTFWRLKDILFLDFSSNLL--------VGTLSFDIGNLKVLLG--------I 292
V IPS F + S NLL V L ++ V+ G +
Sbjct: 185 HVDLSLIPSLF-------HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237
Query: 293 NLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKI 347
L NNL+ A + L +DL+YN LE + F + LE + +SNN++
Sbjct: 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 52/176 (29%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG----------------- 205
I L N+ L L GNKLT P T L+ L LFL NK+
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 206 ---SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
S + L HL +L+ L L NK + + LS LT L L L N+ + ++P
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------ 170
Query: 263 KDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 171 --------------------LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 204
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTF---WRLKDILFLDFS 271
D L +L L GN + +P+ + NL++LR L L NR TS +P+ ++LK F D
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD-- 302
Query: 272 SNLLVGTLSFDIGNL 286
+V TL ++ GNL
Sbjct: 303 --NMVTTLPWEFGNL 315
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 159 IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLD 218
+P I NLSNL L L N+LT +P G +L+ F F+ +V + P E +L L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK-YFYFFDNMVTTLPWEFGNLCNLQ 319
Query: 219 KLVLLGNKFSGSIPSCLS--NLTSLRFLYLGSNR 250
L + GN L+ ++T L F YL NR
Sbjct: 320 FLGVEGNPLEKQFLKILTEKSVTGLIF-YLRDNR 352
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 272 SNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESF 331
SNL + +S +I L + L+ N+L+ ++PA I L +L+++DL++NRL +P
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 332 DDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375
L+ +N ++ ++P L L+ L + N LE +
Sbjct: 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG----------------- 205
I L N+ L L GNKLT P T L+ L LFL NK+
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 206 ---SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
S + L HL +L+ L L NK + + LS LT L L L N+ + ++P
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG----------------- 205
I L N+ L L GNKLT P T L+ L LFL NK+
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 206 ---SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
S + L HL +L+ L L NK + + LS LT L L L N+ + ++P
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG----------------- 205
I L N+ L L GNKLT P T L+ L LFL NK+
Sbjct: 82 IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 206 ---SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
S + L HL +L+ L L NK + + LS LT L L L N+ + ++P
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 24/114 (21%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG----------------- 205
I L N+ L L GNKLT P T L+ L LFL NK+
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 116
Query: 206 ---SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256
S + L HL +L+ L L NK + + LS LT L L L N+ + ++P
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 287 KVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346
+ + I L +N + P K L+ +DL+ N++ P++F L SL + L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 347 ISGSIPKSM 355
I+ +PKS+
Sbjct: 92 IT-ELPKSL 99
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 155 ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL 214
I N+P I+ + LE N + P F +KL+ + L+ N++ PD L
Sbjct: 26 IPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNL 274
L+ LVL GNK + S L SL+ L L +N+ + F L ++ L N
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 275 LVGTLSFDIGNLKVLLGINLSENNLSGD 302
L L+ + ++L++N D
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPFICD 167
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%)
Query: 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202
K L + ++N IS P A L +L +LVL GNK+T + F L LQ L L NK
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRF 251
+ D L L+ L L NK S L +++ ++L N F
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 287 KVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346
+ + I L +N + P K L+ +DL+ N++ P++F L SL + L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 347 ISGSIPKSM 355
I+ +PKS+
Sbjct: 92 IT-ELPKSL 99
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 155 ISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL 214
I N+P I+ + LE N + P F +KL+ + L+ N++ PD L
Sbjct: 26 IPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNL 274
L+ LVL GNK + S L SL+ L L +N+ + F L ++ L N
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 275 LVGTLSFDIGNLKVLLGINLSENNLSGD 302
L L+ + ++L++N D
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPFICD 167
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%)
Query: 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202
K L + ++N IS P A L +L +LVL GNK+T + F L LQ L L NK
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRF 251
+ D L L+ L L NK S L +++ ++L N F
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 65/175 (37%), Gaps = 31/175 (17%)
Query: 34 SRIGLSLP-TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92
+ I +LP T+ + L N P + + KL ++L N S L PD LR+L
Sbjct: 24 TEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL- 82
Query: 93 WLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIAN 152
SL GN + LP S+ SL+ L +
Sbjct: 83 ----------------------------NSLVLYGNKITE-LPKSLFEGLFSLQLLLLNA 113
Query: 153 CSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSC 207
I+ A +L NL L L NKL TF L+ +Q + LA N + C
Sbjct: 114 NKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373
Q++ L N++ P FD LT L ++L NN+++ +KL L +L+L+ N+L+
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 374 EIPSGGIFANFTAETE 389
IP G F N + T
Sbjct: 100 SIPRGA-FDNLKSLTH 114
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 67 LTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFI 126
+T L L GN + + P + NL+NL WL L N + + ++ I
Sbjct: 65 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 122
Query: 127 GNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTT 186
+ LP LE+L + N I+ +S L+ L TL LE N+++ +P
Sbjct: 123 NGLV--HLP--------QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-- 168
Query: 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNK 226
L KLQ L+L+ N + S LC L LD L L +
Sbjct: 169 LACLTKLQNLYLSKNHI--SDLRALCGLKNLDVLELFSQE 206
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
I L N+ L L GNKLT P L+ L LFL NK+ L L KL
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-----SLKDLKKLKS 111
Query: 223 LGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
L + +G S + L +L L LYLG+N+ T + + RL + L N + +
Sbjct: 112 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 168
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 169 -LACLTKLQNLYLSKNHIS-DLRA-LCGLKNLDVLEL 202
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 67 LTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFI 126
+T L L GN + + P + NL+NL WL L N + + ++ I
Sbjct: 68 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 125
Query: 127 GNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTT 186
+ LP LE+L + N I+ +S L+ L TL LE N++ +P
Sbjct: 126 NGLV--HLP--------QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP-- 171
Query: 187 FGRLQKLQGLFLAFNKL 203
RL KLQ L+L+ N +
Sbjct: 172 LARLTKLQNLYLSKNHI 188
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
I L N+ L L GNKLT P L+ L LFL NK+ + L
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKK-----LKS 114
Query: 223 LGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
L + +G S + L +L L LYLG+N+ T + + RL + L N + +
Sbjct: 115 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP- 171
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 172 -LARLTKLQNLYLSKNHIS-DLRA-LRGLKNLDVLEL 205
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373
Q++ L N++ P FD LT L ++L NN+++ +KL L +L+L+ N+L+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 374 EIPSGGIFANFTAETE 389
IP G F N + T
Sbjct: 92 SIPRGA-FDNLKSLTH 106
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 235 LSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNL--LVGTLSFDIGNLKVLLGI 292
L L L+ + R T + + ++++ L+ +N+ + L D+ NL+ I
Sbjct: 119 LDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLE---SI 175
Query: 293 NLSENNLSGDMPATI-GGLKSLQIMDLAYNRLEGQIPES-FDDLTSLEVMNLSNNKISGS 350
N L MP I G + L+ ++LA N+L+ +P+ FD LTSL+ + L N S
Sbjct: 176 EFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 233
Query: 351 IPKSMEKLFYL-RELNLSFNELEGEIPSGG 379
P ++ YL R LN + + +G G
Sbjct: 234 CP----RIDYLSRWLNKNSQKEQGSAKCSG 259
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 303 MPATI-GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSM-EKLFY 360
+PA + +++L ++L N +E FDDL +LE + +NK+ +P+ + K+
Sbjct: 138 IPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPK 195
Query: 361 LRELNLSFNELEGEIPSGGIFANFTA 386
L++LNL+ N+L+ +P GIF T+
Sbjct: 196 LKQLNLASNQLKS-VPD-GIFDRLTS 219
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDR---LDKL 220
+L NL ++ NKL FG++ KL+ L LA N+L S PD + DR L K+
Sbjct: 167 DDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL-KSVPDGI--FDRLTSLQKI 223
Query: 221 VLLGNKFSGSIP 232
L N + S P
Sbjct: 224 WLHTNPWDCSCP 235
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278
+L L N+ + P +L +L+ LY SN+ T++ F +L + LD + N L
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 279 LSFDIGNLKVLLGINLSEN 297
NLK L I L N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 207 CPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL 266
CP + C D+ LV N S+P+ + T + L+L +N+ T + P F L ++
Sbjct: 6 CPSQ-CSCDQ--TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQ 60
Query: 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326
L F+SN L + L L ++L++N+L LKSL + L N + +
Sbjct: 61 QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120
Query: 327 I 327
Sbjct: 121 C 121
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 303 MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLR 362
+PA I K Q + L N++ P FD L +L+ + ++NK++ +KL L
Sbjct: 27 VPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84
Query: 363 ELNLSFNELEGEIPSGGIFANFTAETE 389
+L+L+ N L+ IP G F N + T
Sbjct: 85 QLDLNDNHLKS-IPRGA-FDNLKSLTH 109
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N+L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N+L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N+L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N+L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL 342
+ NL LL LS N+L+ + +L+ +DL+ N L F DL +LEV+ L
Sbjct: 63 LTNLHSLL---LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119
Query: 343 SNNKISGSIPKSMEKLFYLRELNLSFNEL 371
NN I + E + L++L LS N++
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N+L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAG 166
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N L E+P+G
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 167
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 38 LSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91
+S+PTVE L A N ++ +P N ++T+ EL +G + +G LR L
Sbjct: 286 VSIPTVEELLAAHNPWAKVVP----NDREITMRELTPAAVTGTLTTPVGRLRKL 335
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 38 LSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91
+S+PTVE L A N ++ +P N ++T+ EL +G + +G LR L
Sbjct: 286 VSIPTVEELLAAHNPWAKVVP----NDREITMRELTPAAVTGTLTTPVGRLRKL 335
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 67 LTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFI 126
+T L L GN + + P + NL+NL WL L N + + ++ I
Sbjct: 68 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 125
Query: 127 GNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTT 186
+ LP LE+L + N I+ +S L+ L TL LE N+++ +P
Sbjct: 126 NGLV--HLP--------QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-- 171
Query: 187 FGRLQKLQGLFLAFNKL 203
L KLQ L+L+ N +
Sbjct: 172 LAGLTKLQNLYLSKNHI 188
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
I L N+ L L GNKLT P L+ L LFL NK+ L L KL
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-----SLKDLKKLKS 114
Query: 223 LGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
L + +G S + L +L L LYLG+N+ T + + RL + L N + +
Sbjct: 115 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 171
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 172 -LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 205
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 231 IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLL 290
+ + LT LR Y G++ F + W ++ +++ L +D NLK L
Sbjct: 198 VSKAVXRLTKLRQFYXGNSPFVAENICEAWENENS---EYAQQYKTEDLKWD--NLKDLT 252
Query: 291 GINLSENNLSGDMPATIGGLKSLQIMDLAYNR-LEG-QIPESFDDLTS------LEVMNL 342
+ + +P + L Q++++A NR + G Q+ + + L ++++ +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 343 S-NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGG 379
NN + + S++K L L +N+LEG++P+ G
Sbjct: 313 GYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFG 350
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 320 YNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372
Y +L GQIP + D S + L NN ISG K+ R +LSF E +
Sbjct: 227 YEKLWGQIPRNVGDTES--IAKLKNNIISGCTGTLHSKIVQERYASLSFGETD 277
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
I L N+ L L GNKLT P L+ L LFL NK+ L L KL
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-----SLKDLKKLKS 116
Query: 223 LGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
L + +G S + L +L L LYLG+N+ T + + RL + L N + +
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 174 -LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 207
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 67 LTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFI 126
+T L L GN + + P + NL+NL WL L N + + ++ I
Sbjct: 70 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127
Query: 127 GNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTT 186
+ LP LE+L + N I+ +S L+ L TL LE N+++ +P
Sbjct: 128 NGLV--HLP--------QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 187 FGRLQKLQGLFLAFNKL 203
L KLQ L+L+ N +
Sbjct: 174 LAGLTKLQNLYLSKNHI 190
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222
I L N+ L L GNKLT P L+ L LFL NK+ L L KL
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-----SLKDLKKLKS 116
Query: 223 LGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281
L + +G S + L +L L LYLG+N+ T + + RL + L N + +
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173
Query: 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL 318
+ L L + LS+N++S D+ A + GLK+L +++L
Sbjct: 174 -LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 207
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 67 LTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFI 126
+T L L GN + + P + NL+NL WL L N + + ++ I
Sbjct: 70 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127
Query: 127 GNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTT 186
+ LP LE+L + N I+ +S L+ L TL LE N+++ +P
Sbjct: 128 NGLV--HLP--------QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 187 FGRLQKLQGLFLAFNKL 203
L KLQ L+L+ N +
Sbjct: 174 LAGLTKLQNLYLSKNHI 190
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343
G L VL ++LS N L +P L +L ++D+++NRL + L L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378
N++ P + L +L+L+ N L E+P+G
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 18/163 (11%)
Query: 70 LELGGNTFSGLIPDTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNP 129
LE+ + P ++ +++N++ L L C +LR +
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD----- 233
Query: 130 LDGFLPS--SIGNLSKSLETLGIANCSISG----NIPPAISNLSNLLTLVLEGNKLTGPI 183
LD F S S G + ++ N I+ + ++ +S LL L N+L
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
Query: 184 PTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNK 226
F RL LQ ++L N SCP R+D L NK
Sbjct: 294 DGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYLSRWLNK 329
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 268 LDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327
LD S+N + + D+ L + L+ N ++ + L SL+ +DL+YN L
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 328 PESFDDLTSLEVMNLSNN 345
F L+SL +NL N
Sbjct: 117 SSWFKPLSSLTFLNLLGN 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 261 RLKDILFLDFSSNLLVGTL---SFDIGNLKVLLGINLSENNLSG--DMPATIGGLKSLQI 315
LK + +LD S NL+V S L + L +N+L+ T+ LK+L
Sbjct: 332 HLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTN 391
Query: 316 MDLAYNRLEGQIPESFDDLTSLEVMNLSNNKI---SGSIPKSMEKL 358
+D++ N +PE+ ++ +NLS+ +I +G IPK++E L
Sbjct: 392 IDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEIL 436
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKL 220
P S L LL L + N+L F RL LQ ++L N SCP R+D L
Sbjct: 467 PDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------RIDYL 519
Query: 221 VLLGNK 226
NK
Sbjct: 520 SRWLNK 525
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 268 LDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327
LD S+N + + D+ L + L+ N ++ + L SL+ +DL+YN L
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 328 PESFDDLTSLEVMNLSNN 345
F L+SL +NL N
Sbjct: 91 SSWFKPLSSLTFLNLLGN 108
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 216 RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRL 262
R +LVL GN + P +L LR +LG+N + T+ RL
Sbjct: 31 RTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRL 77
>pdb|3G5Y|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 301 GDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL-- 358
D TI L S +D Y GQ P +F TSLE+ P S E+L
Sbjct: 69 ADYSLTISSLSSEDFVDY-YCVQYGQFPWTFGGGTSLEIKRADAAPTVSIFPPSTEQLTS 127
Query: 359 -----------FYLRELNLSFNELEGEIPSGGIFANFTAETEHKS 392
FY +++N+ + +++G G+ ++T + S
Sbjct: 128 GGASVVCFLNNFYPKDINVKW-KIDGSERQNGVLNSWTDQDSKDS 171
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEK 357
E + DLTSLE N++ K G++P+SM K
Sbjct: 113 EKYKDLTSLESANIAAQK--GTVPESMVK 139
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 432 SNDSVLSSQATLRRFSYLELLQATDNFAEN------NIIGRGGFG 470
N S+ S FS+ EL T+NF E N +G GGFG
Sbjct: 1 ENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFG 45
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 432 SNDSVLSSQATLRRFSYLELLQATDNFAEN------NIIGRGGFG 470
N S+ S FS+ EL T+NF E N +G GGFG
Sbjct: 1 ENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFG 45
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 186 TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245
T L+ + L +A K+ E +L L+ L L GN+ + P LSNL L LY
Sbjct: 39 TQEELESITKLVVAGEKVASIQGIE--YLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94
Query: 246 LGSNRFTSV 254
+G+N+ T +
Sbjct: 95 IGTNKITDI 103
>pdb|2HOF|A Chain A, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOF|B Chain B, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOI|A Chain A, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|B Chain B, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|G Chain G, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|H Chain H, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
Length = 343
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 28/141 (19%)
Query: 83 DTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLS 142
D ++RNLA+LG+AYN A ++R + I G + IG +
Sbjct: 153 DRCQDIRNLAFLGIAYNT----------LLRIAEIARIR-VKDISRTDGGRMLIHIGRTA 201
Query: 143 KSLETLGIANC-------------SISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGR 189
+ T G+ S+SG + +N L + N + P T+
Sbjct: 202 TLVSTAGVEKALSLGVTKLVERWISVSG----VADDPNNYLFCRVRKNGVAAPSATSQLS 257
Query: 190 LQKLQGLFLAFNKLVGSCPDE 210
+ L+G+F A ++L+ D+
Sbjct: 258 TRALEGIFEATHRLIYGAKDD 278
>pdb|1PVP|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Alshg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVP|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Alshg Bound To The Engineered Recognition
Site Loxm7
Length = 349
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 28/141 (19%)
Query: 83 DTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLS 142
D ++RNLA+LG+AYN A ++R + I G + IG
Sbjct: 159 DRCQDIRNLAFLGIAYNT----------LLRAAEIARIR-VKDISRTDGGRMLIHIGRTK 207
Query: 143 KSLETLGIANC-------------SISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGR 189
+ T G+ S+SG + +N L + N + P T+
Sbjct: 208 TLVSTAGVEKALSLGVTKLVERWISVSG----VADDPNNYLFCRVRKNGVAAPSATSQLS 263
Query: 190 LQKLQGLFLAFNKLVGSCPDE 210
L L G+F A ++L+ D+
Sbjct: 264 LSALHGIFGATHRLIYGAKDD 284
>pdb|1XO0|A Chain A, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
pdb|1XO0|B Chain B, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
Length = 324
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 28/141 (19%)
Query: 83 DTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLS 142
D ++RNLA+LG+AYN A ++R + I G + IG
Sbjct: 134 DRCQDIRNLAFLGIAYNT----------LLKIAEIARIR-VKDISRTDGGRMLIHIGRTK 182
Query: 143 KSLETLGIANC-------------SISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGR 189
+ T G+ S+SG + +N L + N + P T+
Sbjct: 183 TLVSTAGVEKALSLGVTKLVERWISVSG----VADDPNNYLFCRVRKNGVAAPSATSQLS 238
Query: 190 LQKLQGLFLAFNKLVGSCPDE 210
+ L+G+F A ++L+ D+
Sbjct: 239 TRALEGIFEATHRLIYGAKDD 259
>pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
pdb|3C28|A Chain A, Crystal Structure Of The Product Synapse Complex
pdb|3C28|B Chain B, Crystal Structure Of The Product Synapse Complex
pdb|3C29|A Chain A, Cre-Loxp Synaptic Structure
pdb|3C29|B Chain B, Cre-Loxp Synaptic Structure
pdb|3C29|G Chain G, Cre-Loxp Synaptic Structure
pdb|3C29|H Chain H, Cre-Loxp Synaptic Structure
Length = 322
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 28/141 (19%)
Query: 83 DTIGNLRNLAWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNFIGNPLDGFLPSSIGNLS 142
D ++RNLA+LG+AYN A ++R + I G + IG
Sbjct: 134 DRCQDIRNLAFLGIAYNT----------LLRIAEIARIR-VKDISRTDGGRMLIHIGRTK 182
Query: 143 KSLETLGIANC-------------SISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGR 189
+ T G+ S+SG + +N L + N + P T+
Sbjct: 183 TLVSTAGVEKALSLGVTKLVERWISVSG----VADDPNNYLFCRVRKNGVAAPSATSQLS 238
Query: 190 LQKLQGLFLAFNKLVGSCPDE 210
+ L+G+F A ++L+ D+
Sbjct: 239 TRALEGIFEATHRLIYGAKDD 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,114,305
Number of Sequences: 62578
Number of extensions: 459956
Number of successful extensions: 1774
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 456
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)