Query 011653
Match_columns 480
No_of_seqs 434 out of 4224
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.5E-55 7.7E-60 473.3 34.0 375 1-384 197-596 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-46 2.6E-51 407.0 25.6 369 1-377 173-565 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.9E-38 4.1E-43 295.1 4.5 366 1-375 87-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.2E-37 4.8E-42 288.1 5.8 352 18-377 80-434 (873)
5 KOG0444 Cytoskeletal regulator 100.0 7.8E-36 1.7E-40 280.0 -3.7 355 2-372 17-375 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 3.7E-35 8E-40 261.8 -10.2 348 7-372 105-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 5.4E-34 1.2E-38 267.7 -2.9 332 6-352 45-379 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 2.6E-33 5.7E-38 250.0 -8.1 352 8-379 60-525 (565)
9 PLN03210 Resistant to P. syrin 99.9 1.7E-25 3.7E-30 242.8 26.3 340 9-370 551-904 (1153)
10 KOG0618 Serine/threonine phosp 99.9 1.5E-29 3.2E-34 248.0 -4.8 199 167-370 241-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 9.8E-25 2.1E-29 236.9 23.1 321 3-346 575-904 (1153)
12 KOG0618 Serine/threonine phosp 99.9 1E-28 2.3E-33 242.1 -8.3 345 12-373 41-466 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 2.8E-22 6.1E-27 202.8 17.6 263 43-355 203-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 1.9E-22 4.1E-27 204.1 16.1 267 16-333 201-467 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 1.1E-20 2.4E-25 192.5 11.5 247 41-324 178-428 (754)
16 PRK15370 E3 ubiquitin-protein 99.8 7.9E-21 1.7E-25 193.6 9.4 265 16-325 178-446 (754)
17 KOG4237 Extracellular matrix p 99.8 2.3E-22 4.9E-27 180.1 -2.0 201 162-369 269-498 (498)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.4E-21 9.5E-26 181.8 -1.3 216 112-347 75-319 (319)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.8E-21 8.2E-26 182.3 -2.7 157 215-371 137-319 (319)
20 KOG4237 Extracellular matrix p 99.8 3.4E-21 7.4E-26 172.6 -4.0 296 31-348 60-359 (498)
21 KOG0617 Ras suppressor protein 99.7 5E-20 1.1E-24 146.6 -4.9 164 39-214 31-195 (264)
22 KOG0617 Ras suppressor protein 99.7 1.2E-19 2.6E-24 144.5 -4.0 157 13-180 30-186 (264)
23 PLN03150 hypothetical protein; 99.5 9.8E-14 2.1E-18 141.4 11.5 113 265-377 420-533 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2.1E-14 4.5E-19 135.3 -4.3 169 20-204 79-247 (722)
25 PLN03150 hypothetical protein; 99.3 8.5E-12 1.8E-16 127.3 11.9 109 240-348 419-528 (623)
26 COG4886 Leucine-rich repeat (L 99.3 6.2E-12 1.3E-16 122.6 9.0 179 118-305 116-295 (394)
27 COG4886 Leucine-rich repeat (L 99.3 6.5E-12 1.4E-16 122.5 8.9 200 69-283 97-297 (394)
28 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.9E-18 130.0 -2.9 179 7-201 89-270 (722)
29 KOG1909 Ran GTPase-activating 99.2 5.4E-13 1.2E-17 118.8 -4.0 42 235-276 209-254 (382)
30 KOG3207 Beta-tubulin folding c 99.2 4.1E-12 8.9E-17 116.4 0.3 211 39-254 119-341 (505)
31 KOG3207 Beta-tubulin folding c 99.2 3.9E-12 8.4E-17 116.6 -0.2 164 62-228 118-284 (505)
32 PF14580 LRR_9: Leucine-rich r 99.1 4.6E-11 1E-15 99.9 5.3 131 12-151 15-148 (175)
33 KOG1909 Ran GTPase-activating 99.1 4.6E-12 9.9E-17 113.0 -3.1 199 163-372 88-311 (382)
34 KOG1259 Nischarin, modulator o 99.1 2E-11 4.3E-16 106.7 0.5 134 162-301 279-413 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 97.3 5.2 127 61-199 15-148 (175)
36 KOG4658 Apoptotic ATPase [Sign 99.1 6.7E-11 1.4E-15 123.4 4.2 82 17-99 546-628 (889)
37 KOG1259 Nischarin, modulator o 99.0 3.8E-11 8.3E-16 104.9 0.6 130 88-229 283-413 (490)
38 KOG4658 Apoptotic ATPase [Sign 99.0 2.2E-10 4.8E-15 119.6 5.7 125 17-152 524-651 (889)
39 KOG0531 Protein phosphatase 1, 98.9 2.3E-10 5E-15 111.8 0.2 244 40-303 71-321 (414)
40 KOG0531 Protein phosphatase 1, 98.9 2E-10 4.4E-15 112.2 -1.9 269 40-329 48-323 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 71.7 3.6 59 288-346 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 8.5E-09 1.8E-13 70.8 3.8 59 42-100 2-60 (61)
43 KOG2982 Uncharacterized conser 98.7 2.5E-09 5.3E-14 93.7 -0.2 221 5-229 34-263 (418)
44 KOG1187 Serine/threonine prote 98.7 1.7E-08 3.6E-13 96.0 3.8 39 442-480 61-99 (361)
45 KOG2120 SCF ubiquitin ligase, 98.6 4.3E-10 9.3E-15 98.4 -8.8 157 188-346 207-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.5 9.2E-10 2E-14 96.3 -7.2 177 43-249 187-373 (419)
47 KOG2982 Uncharacterized conser 98.4 8.4E-08 1.8E-12 84.3 0.2 179 87-276 69-262 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 9.5E-09 2.1E-13 100.4 -6.7 180 9-204 102-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.5E-13 99.9 -7.5 125 144-275 165-291 (1096)
50 KOG4579 Leucine-rich repeat (L 98.2 4.2E-08 9.1E-13 76.1 -4.6 112 264-378 54-165 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 8.7E-07 1.9E-11 77.0 2.4 90 12-102 26-133 (388)
52 KOG4579 Leucine-rich repeat (L 98.2 4.7E-08 1E-12 75.8 -4.9 82 168-251 54-135 (177)
53 PRK15386 type III secretion pr 98.0 1.8E-05 3.9E-10 74.8 8.5 54 40-99 51-104 (426)
54 PRK15386 type III secretion pr 98.0 1.9E-05 4.1E-10 74.7 8.6 136 12-177 48-187 (426)
55 PF12799 LRR_4: Leucine Rich r 97.9 8.1E-06 1.8E-10 51.2 2.9 36 42-78 2-37 (44)
56 COG5238 RNA1 Ran GTPase-activa 97.9 3.9E-06 8.5E-11 73.1 1.7 213 12-228 54-316 (388)
57 KOG3665 ZYG-1-like serine/thre 97.9 4E-06 8.6E-11 85.9 1.5 110 16-131 122-233 (699)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.4E-10 49.9 2.7 37 16-54 1-37 (44)
59 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.3E-10 64.8 4.6 103 143-247 42-148 (233)
60 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 7E-10 64.6 4.7 106 18-131 21-126 (233)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 3E-10 82.1 1.5 141 9-151 140-283 (699)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00074 1.6E-08 54.2 8.0 12 187-198 8-19 (129)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00068 1.5E-08 54.4 7.6 60 210-271 7-66 (129)
64 KOG4341 F-box protein containi 97.4 5E-06 1.1E-10 76.8 -5.7 295 17-318 139-459 (483)
65 KOG2739 Leucine-rich acidic nu 97.3 7E-05 1.5E-09 65.3 0.7 108 39-152 41-152 (260)
66 KOG2123 Uncharacterized conser 97.1 1.7E-05 3.6E-10 69.5 -4.7 90 40-137 18-107 (388)
67 KOG4341 F-box protein containi 97.0 4.3E-05 9.4E-10 70.8 -3.6 279 12-293 160-458 (483)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00044 9.5E-09 60.5 1.2 41 259-299 61-103 (260)
69 KOG1947 Leucine rich repeat pr 96.8 0.00015 3.3E-09 72.9 -2.1 37 117-153 268-305 (482)
70 KOG1947 Leucine rich repeat pr 96.4 0.0002 4.3E-09 72.0 -4.4 61 143-203 243-307 (482)
71 KOG3653 Transforming growth fa 96.3 0.0065 1.4E-07 57.7 5.2 18 462-479 216-233 (534)
72 KOG2123 Uncharacterized conser 96.3 0.00017 3.7E-09 63.3 -4.7 86 65-160 19-105 (388)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0082 1.8E-07 31.1 0.9 12 67-78 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0086 1.9E-07 31.0 0.7 17 18-35 2-18 (22)
75 KOG0196 Tyrosine kinase, EPH ( 94.6 0.023 5E-07 57.6 2.7 35 444-478 608-651 (996)
76 KOG1025 Epidermal growth facto 94.5 0.033 7.1E-07 56.9 3.4 19 459-477 699-717 (1177)
77 PLN03224 probable serine/threo 93.9 0.024 5.1E-07 56.7 1.2 24 454-477 143-166 (507)
78 PF13504 LRR_7: Leucine rich r 93.1 0.042 9E-07 26.4 0.7 13 17-29 2-14 (17)
79 KOG4308 LRR-containing protein 93.0 0.00028 6.1E-09 69.4 -13.8 36 120-156 89-128 (478)
80 KOG0193 Serine/threonine prote 92.3 0.07 1.5E-06 52.6 1.7 28 445-479 388-415 (678)
81 PLN03225 Serine/threonine-prot 92.1 0.065 1.4E-06 54.8 1.3 26 454-479 130-155 (566)
82 KOG4308 LRR-containing protein 91.7 0.0022 4.8E-08 63.2 -9.5 187 17-205 88-304 (478)
83 KOG0473 Leucine-rich repeat pr 91.2 0.0045 9.7E-08 53.3 -6.7 88 258-348 37-124 (326)
84 KOG0473 Leucine-rich repeat pr 91.1 0.0062 1.3E-07 52.4 -6.0 92 31-131 32-124 (326)
85 smart00369 LRR_TYP Leucine-ric 90.7 0.18 4E-06 27.2 1.6 22 15-37 1-22 (26)
86 smart00370 LRR Leucine-rich re 90.7 0.18 4E-06 27.2 1.6 22 15-37 1-22 (26)
87 KOG2052 Activin A type IB rece 89.4 0.36 7.8E-06 46.0 3.4 19 461-479 216-234 (513)
88 PF13516 LRR_6: Leucine Rich r 89.0 0.21 4.6E-06 26.3 1.0 18 118-135 2-19 (24)
89 KOG3864 Uncharacterized conser 88.2 0.043 9.2E-07 46.4 -3.1 33 167-199 151-184 (221)
90 smart00369 LRR_TYP Leucine-ric 85.8 0.64 1.4E-05 25.0 1.7 13 66-78 3-15 (26)
91 smart00370 LRR Leucine-rich re 85.8 0.64 1.4E-05 25.0 1.7 13 66-78 3-15 (26)
92 PTZ00284 protein kinase; Provi 85.5 0.24 5.3E-06 49.5 -0.1 30 449-478 122-151 (467)
93 KOG1035 eIF-2alpha kinase GCN2 83.8 0.43 9.2E-06 51.4 0.8 24 453-476 476-499 (1351)
94 KOG0663 Protein kinase PITSLRE 83.2 0.36 7.8E-06 44.3 -0.0 21 456-476 76-96 (419)
95 KOG0194 Protein tyrosine kinas 82.1 0.72 1.6E-05 45.3 1.6 17 462-478 163-179 (474)
96 PRK09605 bifunctional UGMP fam 81.9 1.4 3E-05 45.0 3.7 33 447-479 324-356 (535)
97 KOG3864 Uncharacterized conser 81.3 0.17 3.6E-06 43.0 -2.6 35 311-345 151-186 (221)
98 KOG0192 Tyrosine kinase specif 79.0 1.1 2.3E-05 43.0 1.5 18 462-479 47-64 (362)
99 cd05622 STKc_ROCK1 Catalytic d 78.7 0.85 1.9E-05 44.1 0.8 32 447-478 34-65 (371)
100 PTZ00036 glycogen synthase kin 78.4 0.97 2.1E-05 44.9 1.1 24 455-478 65-88 (440)
101 cd05106 PTKc_CSF-1R Catalytic 78.1 1.1 2.5E-05 43.3 1.5 20 457-476 39-58 (374)
102 cd05621 STKc_ROCK2 Catalytic d 77.7 0.96 2.1E-05 43.7 0.9 28 451-478 38-65 (370)
103 KOG1095 Protein tyrosine kinas 77.5 1.2 2.6E-05 47.9 1.5 19 461-479 697-715 (1025)
104 KOG0600 Cdc2-related protein k 76.7 0.79 1.7E-05 44.5 -0.0 15 462-476 123-137 (560)
105 cd05107 PTKc_PDGFR_beta Cataly 76.0 1.4 3.1E-05 43.0 1.6 20 459-478 40-59 (401)
106 cd05105 PTKc_PDGFR_alpha Catal 75.8 1.5 3.2E-05 42.9 1.6 18 460-477 41-58 (400)
107 cd05596 STKc_ROCK Catalytic do 74.8 0.92 2E-05 43.8 -0.1 25 454-478 41-65 (370)
108 KOG0605 NDR and related serine 73.7 1.9 4.1E-05 42.3 1.6 25 454-478 139-163 (550)
109 PHA03210 serine/threonine kina 73.7 1.9 4E-05 43.7 1.7 23 455-477 147-169 (501)
110 KOG0986 G protein-coupled rece 73.5 1.9 4E-05 41.6 1.5 27 452-478 180-207 (591)
111 PHA03209 serine/threonine kina 72.4 2.2 4.7E-05 41.0 1.8 26 453-478 63-88 (357)
112 KOG4242 Predicted myosin-I-bin 72.2 22 0.00049 34.7 8.2 111 65-179 165-280 (553)
113 PHA03211 serine/threonine kina 70.8 2.6 5.6E-05 42.0 2.0 22 457-478 170-191 (461)
114 KOG1167 Serine/threonine prote 70.3 1.3 2.8E-05 42.0 -0.2 29 450-478 30-58 (418)
115 smart00364 LRR_BAC Leucine-ric 70.2 3.2 6.9E-05 22.4 1.3 16 336-352 3-18 (26)
116 KOG4257 Focal adhesion tyrosin 70.1 2.1 4.6E-05 43.0 1.2 19 461-479 394-412 (974)
117 PLN00034 mitogen-activated pro 69.4 2.5 5.4E-05 40.4 1.5 18 461-478 79-96 (353)
118 KOG1024 Receptor-like protein 68.6 12 0.00026 35.6 5.6 30 450-479 278-307 (563)
119 PF14575 EphA2_TM: Ephrin type 63.6 4.8 0.0001 28.5 1.6 17 445-461 56-72 (75)
120 TIGR01982 UbiB 2-polyprenylphe 61.5 4.8 0.0001 39.8 1.8 24 456-480 118-141 (437)
121 smart00368 LRR_RI Leucine rich 61.3 6.9 0.00015 21.4 1.7 13 312-324 3-15 (28)
122 smart00365 LRR_SD22 Leucine-ri 60.4 8.1 0.00018 20.9 1.7 12 312-323 3-14 (26)
123 PHA03212 serine/threonine kina 59.2 4.4 9.5E-05 39.5 1.0 22 456-477 92-113 (391)
124 KOG0581 Mitogen-activated prot 59.2 7.4 0.00016 36.5 2.4 27 445-478 75-101 (364)
125 KOG0694 Serine/threonine prote 58.6 5 0.00011 40.8 1.3 24 455-478 367-390 (694)
126 KOG4258 Insulin/growth factor 57.7 6.1 0.00013 41.1 1.8 19 460-478 998-1016(1025)
127 KOG1166 Mitotic checkpoint ser 57.5 5.2 0.00011 43.1 1.3 24 456-479 698-721 (974)
128 PF04478 Mid2: Mid2 like cell 56.4 4.8 0.0001 32.5 0.6 12 455-466 111-122 (154)
129 KOG3763 mRNA export factor TAP 55.6 4.3 9.2E-05 40.2 0.3 64 63-131 216-283 (585)
130 KOG1026 Nerve growth factor re 48.8 5.2 0.00011 41.6 -0.3 18 462-479 492-509 (774)
131 PF08693 SKG6: Transmembrane a 48.6 12 0.00027 22.6 1.4 6 401-406 17-22 (40)
132 PHA03207 serine/threonine kina 46.8 10 0.00022 36.9 1.4 22 457-478 93-114 (392)
133 KOG1151 Tousled-like protein k 46.8 2.8 6E-05 40.3 -2.4 15 462-476 469-483 (775)
134 PF15102 TMEM154: TMEM154 prot 46.4 22 0.00048 28.6 2.9 8 445-452 124-131 (146)
135 smart00367 LRR_CC Leucine-rich 46.3 14 0.00031 19.6 1.3 13 310-322 1-13 (26)
136 PF08114 PMP1_2: ATPase proteo 46.0 44 0.00095 20.1 3.3 10 413-422 25-34 (43)
137 KOG1006 Mitogen-activated prot 43.4 4.7 0.0001 36.1 -1.3 25 445-476 60-84 (361)
138 PRK04750 ubiB putative ubiquin 40.1 23 0.00049 36.0 2.7 24 456-480 120-144 (537)
139 KOG4236 Serine/threonine prote 39.1 12 0.00027 37.0 0.6 19 458-477 567-585 (888)
140 PF12877 DUF3827: Domain of un 36.8 67 0.0015 32.8 5.2 24 395-418 267-290 (684)
141 KOG4242 Predicted myosin-I-bin 35.2 1.5E+02 0.0032 29.4 6.9 67 16-85 165-234 (553)
142 PHA03281 envelope glycoprotein 33.9 82 0.0018 31.4 5.1 16 457-474 619-637 (642)
143 KOG0197 Tyrosine kinases [Sign 33.9 20 0.00044 35.2 1.2 18 462-479 212-229 (468)
144 KOG1989 ARK protein kinase fam 33.1 21 0.00046 37.3 1.2 19 461-479 42-60 (738)
145 PTZ00267 NIMA-related protein 32.2 20 0.00044 36.0 0.9 20 458-477 69-88 (478)
146 KOG0584 Serine/threonine prote 32.1 20 0.00043 36.3 0.8 15 462-476 46-60 (632)
147 KOG4279 Serine/threonine prote 32.1 21 0.00047 36.8 1.0 17 460-476 579-595 (1226)
148 PF09919 DUF2149: Uncharacteri 31.5 26 0.00055 25.9 1.1 14 465-480 71-85 (92)
149 TIGR00864 PCC polycystin catio 29.1 33 0.00072 41.4 2.0 32 317-348 1-32 (2740)
150 KOG0199 ACK and related non-re 29.1 22 0.00047 36.8 0.5 17 462-478 116-132 (1039)
151 KOG0664 Nemo-like MAPK-related 27.6 32 0.00069 31.1 1.2 17 460-476 57-73 (449)
152 KOG0592 3-phosphoinositide-dep 27.6 32 0.0007 34.3 1.3 20 458-477 75-94 (604)
153 KOG0200 Fibroblast/platelet-de 25.5 38 0.00082 35.3 1.5 17 462-478 302-318 (609)
154 KOG3763 mRNA export factor TAP 24.8 35 0.00077 34.1 1.1 14 214-227 217-230 (585)
155 KOG1665 AFH1-interacting prote 24.0 1.1E+02 0.0024 26.7 3.7 9 245-253 262-270 (302)
156 PRK15449 ferredoxin-like prote 23.5 42 0.00091 25.0 1.0 10 465-474 84-93 (95)
157 COG4744 Uncharacterized conser 23.5 1.3E+02 0.0029 22.9 3.5 17 462-480 88-107 (121)
158 KOG3482 Small nuclear ribonucl 20.8 61 0.0013 22.3 1.3 17 462-478 20-36 (79)
159 KOG4278 Protein tyrosine kinas 20.0 53 0.0012 33.6 1.2 18 461-478 272-289 (1157)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.5e-55 Score=473.30 Aligned_cols=375 Identities=35% Similarity=0.551 Sum_probs=274.7
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|+++|.+|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..++++++|++|++++|.+++.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 3667777787788888888888888877777777777 677788888877777777777777777777777777777777
Q ss_pred CcccccCCCCCCEEeccCcccCCC-CCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccC
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNI 159 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~ 159 (480)
+|..+.++++|+.|++++|.+.+. | ..+.++++|+.|++++|.+.+.+|..+..+ ++|+.|++++|.+++.+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIP------ELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCC------hhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcC
Confidence 777777777777777777777654 3 445555666666666666665555555555 45666666666555555
Q ss_pred cccccCCCCCCEEEcccccccccCCcCc------------------------CCCCCCCceecccccccccCCccCCCCC
Q 011653 160 PPAISNLSNLLTLVLEGNKLTGPIPTTF------------------------GRLQKLQGLFLAFNKLVGSCPDELCHLD 215 (480)
Q Consensus 160 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 215 (480)
|..++.+++|+.|++++|.+++.+|..+ +.+++|+.|++++|.+++.+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 5555555555555555555555555444 4455555555555555555555555555
Q ss_pred CCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecC
Q 011653 216 RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLS 295 (480)
Q Consensus 216 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 295 (480)
+|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 507 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence 55555555555555555555555566666666666555555544 34667778888888888888888889999999999
Q ss_pred CccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccC
Q 011653 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 296 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~ 375 (480)
+|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..++.|+.+++++|++.|.+
T Consensus 508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccc
Q 011653 376 PSGGIFANF 384 (480)
Q Consensus 376 p~~~~~~~~ 384 (480)
|..+.+..+
T Consensus 588 p~~~~~~~~ 596 (968)
T PLN00113 588 PSTGAFLAI 596 (968)
T ss_pred CCcchhccc
Confidence 987766543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-46 Score=406.96 Aligned_cols=369 Identities=36% Similarity=0.590 Sum_probs=320.1
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++.+|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+++.+|..++++++|++|++++|.+++.
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 4788999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCEEeccCcccCCC-CCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccC
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNI 159 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~ 159 (480)
+|..++++++|+.|++++|.+++. | ..+.++++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+.+
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIP------PSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKI 324 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCc------hhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcC
Confidence 999999999999999999999875 4 678899999999999999999999999988 78999999999999999
Q ss_pred cccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCC
Q 011653 160 PPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLT 239 (480)
Q Consensus 160 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 239 (480)
|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..++
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 99999999999999999999999999999999999999999999888887777777777777777776666666666666
Q ss_pred CCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccc-----------------------cccCCeeecCC
Q 011653 240 SLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGN-----------------------LKVLLGINLSE 296 (480)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------------------~~~L~~L~l~~ 296 (480)
+|+.|++++|++++.+|..+..++.|+.|++++|.+.+.++..+.. .++|+.|++++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 6666666666666666655555555555555555555544433322 35667777777
Q ss_pred ccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 297 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.+++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 77777788888888999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C
Q 011653 377 S 377 (480)
Q Consensus 377 ~ 377 (480)
.
T Consensus 565 ~ 565 (968)
T PLN00113 565 K 565 (968)
T ss_pred h
Confidence 6
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-38 Score=295.13 Aligned_cols=366 Identities=24% Similarity=0.259 Sum_probs=295.9
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.++..-+..|-++++|+.+++.+|.++ .||.... ...+|+.|+|.+|.|+..-.+++..++.|+.|||+.|.++..
T Consensus 87 nNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i 164 (873)
T KOG4194|consen 87 NNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI 164 (873)
T ss_pred ccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc
Confidence 46777777778888888888888888888 8888877 678888888888888866667788888888888888888876
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCc
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP 160 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~ 160 (480)
.-.+|..-.++++|+|+.|.++.... ..|.++.+|..|.|+.|.++..-+..|.++ ++|+.|+|.+|++.-.--
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~-----~~F~~lnsL~tlkLsrNrittLp~r~Fk~L-~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLET-----GHFDSLNSLLTLKLSRNRITTLPQRSFKRL-PKLESLDLNRNRIRIVEG 238 (873)
T ss_pred cCCCCCCCCCceEEeecccccccccc-----ccccccchheeeecccCcccccCHHHhhhc-chhhhhhccccceeeehh
Confidence 66667777788888888888887732 667888888888888888884333444456 688889988888763334
Q ss_pred ccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCC
Q 011653 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTS 240 (480)
Q Consensus 161 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 240 (480)
-.|..+++|+.|.|..|.+...-...|..|.++++|+|+.|+++..-..++.+++.|+.|+++.|.+....++.+..+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 56778888888888888888777788888888999999988888777788888888999999998888778888888888
Q ss_pred CCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCc---cccCCCCCcEEe
Q 011653 241 LRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA---TIGGLKSLQIMD 317 (480)
Q Consensus 241 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~ 317 (480)
|++|+|+.|+++..-+..|..+..|+.|+|+.|++...-...|..+++|++|+|++|.+++.+.+ .|..+++|+.|+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 99999999988887778888888888899999888766666778888899999999988876543 466788888999
Q ss_pred CcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccC
Q 011653 318 LAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 318 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~ 375 (480)
+.+|++....-.+|..++.|++|||.+|.+...-|..|..+ .|+.|.+..-.+.+.+
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 99998885555688888899999999998887778888877 7887777665555444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=288.06 Aligned_cols=352 Identities=25% Similarity=0.287 Sum_probs=311.3
Q ss_pred ccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEecc
Q 011653 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (480)
Q Consensus 18 L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 97 (480)
-+.||+++|.+. .+-...+.++++|+++++..|.++ .+|...+...+|+.|+|.+|.++..-...+..++.|+.|+|+
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 456999999998 665554459999999999999998 888877777889999999999988877888999999999999
Q ss_pred CcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccc
Q 011653 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGN 177 (480)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 177 (480)
.|.++..+. ..|..-.++++|+|++|.++..-...|..+ .+|.+|.|++|+++..-+..|.++++|+.|+|..|
T Consensus 158 rN~is~i~~-----~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 158 RNLISEIPK-----PSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hchhhcccC-----CCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 999998864 567777899999999999997777788888 58999999999999444456666999999999999
Q ss_pred cccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCc
Q 011653 178 KLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPS 257 (480)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 257 (480)
++.-.---.|..+++|+.|.|..|.+...--..|..|.++++|+|..|+++..-..++.+++.|+.|+++.|.+...-++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 98744356789999999999999999877778899999999999999999988888999999999999999999988888
Q ss_pred cccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCc---cccCC
Q 011653 258 TFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPE---SFDDL 334 (480)
Q Consensus 258 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~l 334 (480)
.+..+++|++|+|+.|+++...+..|..+..|++|+|++|.++..-..+|..+++|+.|||++|.+++.+.+ .|..+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 999999999999999999999999999999999999999999977778899999999999999999988765 47789
Q ss_pred CCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 335 TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 335 ~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
++|+.|++.+|++....-..|..++.|++||+.+|.+...-|.
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 9999999999999965567889999999999999998765554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=7.8e-36 Score=279.99 Aligned_cols=355 Identities=26% Similarity=0.367 Sum_probs=291.0
Q ss_pred Cccc-cccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 2 NNLV-GMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 2 n~~~-g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
|-|+ +.+|.....++.++-|.|....+. .+|++++ .|.+|+.|++.+|++. .+-.++..++.|+.+.+.+|++...
T Consensus 17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccC
Confidence 6777 678888888888888888888887 8899888 7889999999888886 5566777888888888888877532
Q ss_pred -CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccC
Q 011653 81 -IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNI 159 (480)
Q Consensus 81 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~ 159 (480)
+|.++-.+..|..|+|++|++...| ..+.+-.++-+|+|+.|++. .||..+..-...|-.|||++|.+. .+
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hc
Confidence 5667778888999999999998887 67777888889999998887 677665532367888999998887 68
Q ss_pred cccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccc-cccCCccCCCCCCCCEEEccCccccccCCccCCCC
Q 011653 160 PPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL-VGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNL 238 (480)
Q Consensus 160 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l 238 (480)
|+.+..+..|++|+|++|.+...--..+..+++|++|++++.+- ...+|..+..+.+|..++++.|++. .+|+.+.++
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 88888888999999999887654444556677788888887543 3458888888889999999999887 788888889
Q ss_pred CCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccc-cCCccccCCCCCcEEe
Q 011653 239 TSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSG-DMPATIGGLKSLQIMD 317 (480)
Q Consensus 239 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~ 317 (480)
++|+.|+|++|+++. +........+|++|+++.|+++ .+|..+..+++|+.|.+.+|+++- .+|..++.+..|+.+.
T Consensus 245 ~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 999999999998874 3344556678889999999887 778888889999999999988763 5788888899999999
Q ss_pred CcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccc
Q 011653 318 LAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 318 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
..+|.+. .+|+.++.|..|+.|.|+.|.+. .+|+.+.-++-|+.+|+..|+-.
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 9888887 78999999999999999999988 78888888899999999888643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.7e-35 Score=261.84 Aligned_cols=348 Identities=26% Similarity=0.415 Sum_probs=228.4
Q ss_pred ccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccc-------
Q 011653 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG------- 79 (480)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------- 79 (480)
.+|+++.+..+|++++.++|.+. ++|++++ .+..+..++..+|+++ .+|..+.++.+|..+++.+|.+..
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence 46667777777777777777766 6666666 5666666666666665 555555555555555555554443
Q ss_pred ---------------cCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcccc
Q 011653 80 ---------------LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKS 144 (480)
Q Consensus 80 ---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 144 (480)
.+|..++.+.+|..|++..|++... ++|..|..|..|++..|++. .+|+..++-..+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-------Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~ 253 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL-------PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNS 253 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC-------CCCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence 3344455555555555555555443 35666777777777777666 566666633367
Q ss_pred CcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccc-------------------
Q 011653 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG------------------- 205 (480)
Q Consensus 145 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~------------------- 205 (480)
|.+||+++|+++ .+|+.+..+++|..||+++|.++ ..|..++++ .|+.|.+.+|.+..
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 788888888877 67777777888888888888877 456667777 77777777776531
Q ss_pred ------------------cCCc----cCCCCCCCCEEEccCccccccCCccCCCCCC---CCEEEcCCcccc--------
Q 011653 206 ------------------SCPD----ELCHLDRLDKLVLLGNKFSGSIPSCLSNLTS---LRFLYLGSNRFT-------- 252 (480)
Q Consensus 206 ------------------~~~~----~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~l~~n~~~-------- 252 (480)
..|. ....+-+.+.|+++.-+++ .+|........ ...++++.|++.
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 0000 0011223344444444443 33333222211 445555555543
Q ss_pred ---------------ccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEe
Q 011653 253 ---------------SVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMD 317 (480)
Q Consensus 253 ---------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 317 (480)
+.+|..++.+++|..|+|++|.+. .+|.+++.+..|+.|+++.|++. .+|..+..+..++.+-
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLL 487 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHH
Confidence 355666677777788888777664 66777777777888888888776 6776666666666666
Q ss_pred CcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccc
Q 011653 318 LAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 318 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
.++|++....|+.+.++.+|..||+.+|.+. .+|..++++++|+++++++|+|.
T Consensus 488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6777777444555889999999999999998 88999999999999999999998
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.4e-34 Score=267.67 Aligned_cols=332 Identities=27% Similarity=0.381 Sum_probs=295.5
Q ss_pred cccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcce-ecCCcccccCCCCCEEeccCCcccccCccc
Q 011653 6 GMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFS-GTIPSSITNASKLTLLELGGNTFSGLIPDT 84 (480)
Q Consensus 6 g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 84 (480)
..+|++++.|.+|++|.++.|.+. .+.-++. .++.||.+.+..|++. .-+|..+..+..|+.|||++|++. ..|..
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~ 121 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN 121 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh
Confidence 358999999999999999999998 7877887 7999999999999986 348899999999999999999998 67888
Q ss_pred ccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCccccc
Q 011653 85 IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAIS 164 (480)
Q Consensus 85 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 164 (480)
+.+-.++-.|+|++|++...|. ..+.++..|-.|||+.|.+. .+|..+..+ ..|++|+|++|.+...--..+.
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn-----~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPN-----SLFINLTDLLFLDLSNNRLE-MLPPQIRRL-SMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCc-----hHHHhhHhHhhhccccchhh-hcCHHHHHH-hhhhhhhcCCChhhHHHHhcCc
Confidence 9999999999999999999875 66889999999999999998 788899998 6899999999987644444566
Q ss_pred CCCCCCEEEccccccc-ccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCE
Q 011653 165 NLSNLLTLVLEGNKLT-GPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRF 243 (480)
Q Consensus 165 ~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 243 (480)
.+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+.++++|+.|+|++|.++ ++.-......+|++
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 7888999999987654 467889999999999999999997 78999999999999999999998 44444566689999
Q ss_pred EEcCCccccccCCccccCCCCCCEEecCCCccC-CCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCcc
Q 011653 244 LYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV-GTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNR 322 (480)
Q Consensus 244 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 322 (480)
|+++.|+++ .+|..++.++.|+.|.+.+|.++ .-+|..++.+.+|+.++.++|.+. .+|..++.|..|+.|.|+.|+
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence 999999998 68999999999999999999885 357888999999999999999997 899999999999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCc
Q 011653 323 LEGQIPESFDDLTSLEVMNLSNNKISGSIP 352 (480)
Q Consensus 323 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 352 (480)
+- .+|+++.-++.|+.||+..|+---..|
T Consensus 351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 98 799999999999999999997543444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-33 Score=250.05 Aligned_cols=352 Identities=30% Similarity=0.465 Sum_probs=251.4
Q ss_pred cchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccC
Q 011653 8 VSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGN 87 (480)
Q Consensus 8 ~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 87 (480)
+.+.+.++..|.+++++.|.+. ++|+.++ .+..++.++.++|+++ .+|++++.+.+|+.++.++|.+. ..|++++.
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred ccHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence 4456677788888888888888 8888888 6888888888888887 78888888888888888888887 45666888
Q ss_pred CCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCC
Q 011653 88 LRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLS 167 (480)
Q Consensus 88 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 167 (480)
+..|+.++..+|+++..| ..+.++.+|..+++.+|.+....|..+. + +.|++||...|.+. .+|+.++.+.
T Consensus 136 ~~~l~dl~~~~N~i~slp------~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m-~~L~~ld~~~N~L~-tlP~~lg~l~ 206 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLP------EDMVNLSKLSKLDLEGNKLKALPENHIA-M-KRLKHLDCNSNLLE-TLPPELGGLE 206 (565)
T ss_pred HhhhhhhhccccccccCc------hHHHHHHHHHHhhccccchhhCCHHHHH-H-HHHHhcccchhhhh-cCChhhcchh
Confidence 888888888888888777 6778888888888888888844444444 4 78888888888776 7888888888
Q ss_pred CCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCC-CCCCCCEEEccCccccccCCccCCCCCCCCEEEc
Q 011653 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC-HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYL 246 (480)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 246 (480)
+|..|++..|.+. ..| .|..|..|.+++++.|++. .+|.+.+ +++++..|++.+|++. +.|..+..+++|..||+
T Consensus 207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDL 282 (565)
T ss_pred hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcc
Confidence 8888888888887 556 5777888888888777776 4454443 6777777777777776 66777777777777777
Q ss_pred CCccccccCCccccCCCCCCEEecCCCccCC-------------------------------------------------
Q 011653 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLLVG------------------------------------------------- 277 (480)
Q Consensus 247 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------------------------------- 277 (480)
++|.+++ .|..++++ .|+.|.+-+|.+..
T Consensus 283 SNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 283 SNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred cCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 7777764 56666666 66666666665410
Q ss_pred ---------------CCCcccc---ccccCCeeecCCcccc-----------------------ccCCccccCCCCCcEE
Q 011653 278 ---------------TLSFDIG---NLKVLLGINLSENNLS-----------------------GDMPATIGGLKSLQIM 316 (480)
Q Consensus 278 ---------------~~~~~~~---~~~~L~~L~l~~n~l~-----------------------~~~~~~~~~~~~L~~L 316 (480)
.+|.... .-.-....+++.|++. +.+|..++.+++|..|
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 0000000 0000223344444332 1345555667888888
Q ss_pred eCcCccccccCCccccCCCCCCEEEccCCccc----------------------ccC-ccccccCCCCCEEECccCcccc
Q 011653 317 DLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS----------------------GSI-PKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 317 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~----------------------~~~-p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
+|++|.+. .+|..++.+..|+.+|++.|.+- +.+ |+.+.++..|..+|+.+|.+..
T Consensus 441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred ecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence 88888877 67888888888888888888765 122 2336778889999999998874
Q ss_pred cCCCCC
Q 011653 374 EIPSGG 379 (480)
Q Consensus 374 ~~p~~~ 379 (480)
.-|.-|
T Consensus 520 IPp~Lg 525 (565)
T KOG0472|consen 520 IPPILG 525 (565)
T ss_pred CChhhc
Confidence 433333
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.7e-25 Score=242.80 Aligned_cols=340 Identities=22% Similarity=0.285 Sum_probs=257.6
Q ss_pred chhhhcCccccceeccccc------ccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCc
Q 011653 9 SATIFNMSTLKIIILINNS------LSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIP 82 (480)
Q Consensus 9 ~~~~~~~~~L~~L~l~~~~------~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 82 (480)
+.+|..|++|+.|.+..+. ....+|..+..-.++|+.|.+.++.++ .+|..+ ...+|+.|++.+|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 3468889999999987653 233577776632356999999988886 778776 5689999999999887 456
Q ss_pred ccccCCCCCCEEeccCcc-cCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcc
Q 011653 83 DTIGNLRNLAWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPP 161 (480)
Q Consensus 83 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~ 161 (480)
..+..+++|+.++++++. +... +.+..+++|+.|++++|.....+|..+..+ ++|+.|++++|.....+|.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~i-------p~ls~l~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEI-------PDLSMATNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcC-------CccccCCcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCC
Confidence 677889999999998764 3333 347788999999999987777889999888 6899999998865557777
Q ss_pred cccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCcccc-------ccCCcc
Q 011653 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFS-------GSIPSC 234 (480)
Q Consensus 162 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~p~~ 234 (480)
.+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++... ...+..
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence 65 7889999999998766566643 467889999998876 566554 5778888887764321 111112
Q ss_pred CCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCc
Q 011653 235 LSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQ 314 (480)
Q Consensus 235 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 314 (480)
....++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~ 849 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS 849 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence 2334688899999888777888888889999999998887666677655 6788899999887655455543 35788
Q ss_pred EEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCc
Q 011653 315 IMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNE 370 (480)
Q Consensus 315 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~ 370 (480)
.|+|++|.+. .+|..+..+++|+.|++++|+--..+|..+..++.|+.+++++|.
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8999998887 678888888999999998865444677777788888888888875
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-29 Score=247.97 Aligned_cols=199 Identities=29% Similarity=0.360 Sum_probs=136.2
Q ss_pred CCCCEEEcccccccccCCcCcCCCCCCCceecccccccc----------------------cCCccCCCCCCCCEEEccC
Q 011653 167 SNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG----------------------SCPDELCHLDRLDKLVLLG 224 (480)
Q Consensus 167 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~----------------------~~~~~~~~~~~L~~L~l~~ 224 (480)
.+|++++++.|.++ .+|++++.|.+|+.++...|+++. -+|.......+|++|+|..
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 35556666666665 344666666666666666665531 3445555566667777766
Q ss_pred ccccccCCccC--------------------------CCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCC
Q 011653 225 NKFSGSIPSCL--------------------------SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278 (480)
Q Consensus 225 n~l~~~~p~~l--------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 278 (480)
|++.. +|+.+ ...+.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++...
T Consensus 320 N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 NNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred ccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 66542 22110 1123566666677777766666677778888888888888766
Q ss_pred CCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccC
Q 011653 279 LSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL 358 (480)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~ 358 (480)
....+.++..|++|+||+|.++ .+|..+..|+.|++|...+|++. ..| .+..++.|+.+|++.|+++...-......
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 6666778888888888888888 77888888888888888888887 667 78888999999999998875332233344
Q ss_pred CCCCEEECccCc
Q 011653 359 FYLRELNLSFNE 370 (480)
Q Consensus 359 ~~L~~l~l~~n~ 370 (480)
+.|++||+++|.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 789999999886
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=9.8e-25 Score=236.87 Aligned_cols=321 Identities=22% Similarity=0.263 Sum_probs=260.4
Q ss_pred ccccccchhhhcCc-cccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccC
Q 011653 3 NLVGMVSATIFNMS-TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLI 81 (480)
Q Consensus 3 ~~~g~~~~~~~~~~-~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 81 (480)
.+...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .++..+..+++|+.|+|+++.....+
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcC
Confidence 34556788888775 6999999999987 999987 4799999999999997 78888999999999999987655566
Q ss_pred cccccCCCCCCEEeccCcc-cCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCc
Q 011653 82 PDTIGNLRNLAWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP 160 (480)
Q Consensus 82 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~ 160 (480)
|. ++.+++|+.|++++|. +...| ..+.++++|+.|++++|.....+|..+ .+ ++|++|++++|.....+|
T Consensus 651 p~-ls~l~~Le~L~L~~c~~L~~lp------~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l-~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 651 PD-LSMATNLETLKLSDCSSLVELP------SSIQYLNKLEDLDMSRCENLEILPTGI-NL-KSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred Cc-cccCCcccEEEecCCCCccccc------hhhhccCCCCEEeCCCCCCcCccCCcC-CC-CCCCEEeCCCCCCccccc
Confidence 64 8889999999999875 43335 778999999999999987666788766 45 789999999997665666
Q ss_pred ccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccccc-------ccCCccCCCCCCCCEEEccCccccccCCc
Q 011653 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV-------GSCPDELCHLDRLDKLVLLGNKFSGSIPS 233 (480)
Q Consensus 161 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 233 (480)
.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+.....+++|+.|++++|...+.+|.
T Consensus 722 ~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 722 DI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred cc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh
Confidence 53 468999999999987 566654 6788888888764321 11222233457899999999988888999
Q ss_pred cCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCC
Q 011653 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSL 313 (480)
Q Consensus 234 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 313 (480)
.++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L 871 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL 871 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence 99999999999999986555677765 7899999999998766565543 468999999999998 789999999999
Q ss_pred cEEeCcCccccccCCccccCCCCCCEEEccCCc
Q 011653 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 314 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 346 (480)
+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999976444688888889999999999885
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1e-28 Score=242.09 Aligned_cols=345 Identities=28% Similarity=0.355 Sum_probs=240.2
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
+.++-+|+.||+++|... ..|..+. .+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|
T Consensus 41 ~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred hhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence 445556888888888877 8888888 7888888888888887 77788888888888888888776 567778888888
Q ss_pred CEEeccCcccCCCCCccccc--------------ccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcc
Q 011653 92 AWLGLAYNNLTSSTSKLSFL--------------SSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISG 157 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~--------------~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~ 157 (480)
+.|+++.|++...|..+... ..++.. ..+.+++..|.+.+.++..+..+ ++ .|+|++|.+.
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l-~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-SIKKLDLRLNVLGGSFLIDIYNL-TH--QLDLRYNEME- 191 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-cchhhhhhhhhcccchhcchhhh-he--eeecccchhh-
Confidence 88888888887665322111 012222 26667777777777777777665 33 6888888775
Q ss_pred cCcccccCCCCC--------------------CEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCC
Q 011653 158 NIPPAISNLSNL--------------------LTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRL 217 (480)
Q Consensus 158 ~~~~~l~~l~~L--------------------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 217 (480)
. ..+..+++| +.|+.+.|.++...+ -..-.+|++++++.|+++ .+|++++.+.+|
T Consensus 192 ~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 192 V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANL 266 (1081)
T ss_pred h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccc
Confidence 1 123334444 444444444441111 123457999999999998 566999999999
Q ss_pred CEEEccCccccc----------------------cCCccCCCCCCCCEEEcCCccccccCCcccc---------------
Q 011653 218 DKLVLLGNKFSG----------------------SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFW--------------- 260 (480)
Q Consensus 218 ~~L~l~~n~l~~----------------------~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~--------------- 260 (480)
+.+...+|.++. .+|.....+++|++|++..|++....+..+.
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 999999998752 3455556667777777777766532111110
Q ss_pred ----------CCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCcc
Q 011653 261 ----------RLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330 (480)
Q Consensus 261 ----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 330 (480)
..+.|+.|.+.+|.++....+.+-++++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 1233455666677776666666677777888888888776333345567777788888888887 67777
Q ss_pred ccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccc
Q 011653 331 FDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 331 ~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 777888888888888877 667 77889999999999998863
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=2.8e-22 Score=202.81 Aligned_cols=263 Identities=27% Similarity=0.349 Sum_probs=132.6
Q ss_pred CcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCE
Q 011653 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 122 (480)
Q Consensus 43 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~ 122 (480)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++..|. . .++|+.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~------l---p~sL~~ 266 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------L---PPGLLE 266 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC------c---ccccce
Confidence 444555555554 4444443 245555555555543 232 13455555555555554431 1 134555
Q ss_pred EECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccc
Q 011653 123 LNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202 (480)
Q Consensus 123 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 202 (480)
|+++.|.+. .+|. +..+|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.
T Consensus 267 L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 267 LSIFSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred eeccCCchh-hhhh----chhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCc
Confidence 555555554 2332 1134555555555554 33331 2455555555555553 2321 1234555555555
Q ss_pred ccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCcc
Q 011653 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFD 282 (480)
Q Consensus 203 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 282 (480)
+++ +|.. ..+|+.|+|++|+++ .+|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|.+.+ +|..
T Consensus 334 L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 334 LTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL 400 (788)
T ss_pred ccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc
Confidence 542 3321 135556666666655 23432 2345555666666553 3432 2345666666666653 2321
Q ss_pred ccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCcccc
Q 011653 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSM 355 (480)
Q Consensus 283 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 355 (480)
.++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 245666666666665 34532 235566666666666 566666666666666666666666655544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.9e-22 Score=204.08 Aligned_cols=267 Identities=26% Similarity=0.349 Sum_probs=214.5
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEe
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 95 (480)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|.. +++|++|++++|+++. +|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceee
Confidence 45678999999999 8999876 48999999999998 56753 5799999999999985 4542 46899999
Q ss_pred ccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcc
Q 011653 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (480)
Q Consensus 96 l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 175 (480)
+++|.++..| .. ..+|+.|++++|.++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|+++
T Consensus 269 Ls~N~L~~Lp------~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls 330 (788)
T PRK15387 269 IFSNPLTHLP------AL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAY 330 (788)
T ss_pred ccCCchhhhh------hc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccc
Confidence 9999998765 21 256889999999998 55642 3689999999999984 5542 2468889999
Q ss_pred cccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccC
Q 011653 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVI 255 (480)
Q Consensus 176 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 255 (480)
+|.+++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|++++ +
T Consensus 331 ~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 331 NNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-C
Confidence 999984 5542 2589999999999984 5543 357889999999998 46653 3579999999999985 5
Q ss_pred CccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccC
Q 011653 256 PSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (480)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 333 (480)
|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 398 P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 543 3679999999999985 5543 357888999999998 79999999999999999999999988877643
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.1e-20 Score=192.50 Aligned_cols=247 Identities=26% Similarity=0.375 Sum_probs=156.5
Q ss_pred CCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCC
Q 011653 41 PTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL 120 (480)
Q Consensus 41 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L 120 (480)
.+...|+++++.++ .+|..+. ++|+.|++++|.++. +|..+. .+|+.|++++|.++..| ..+. ++|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP------~~l~--~~L 243 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIP------ATLP--DTI 243 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCC------hhhh--ccc
Confidence 45667777777776 4565543 467777777777774 344332 46777777777777655 2222 357
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccc
Q 011653 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (480)
Q Consensus 121 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 200 (480)
+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS 313 (754)
T ss_pred cEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence 77777777776 5666553 36777888777777 4666553 477788888777773 444332 4677777777
Q ss_pred ccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCC
Q 011653 201 NKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS 280 (480)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 280 (480)
|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+. +.|+.|++++|.+.+ +|
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LP 383 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CC
Confidence 77763 44433 2567777777777763 555443 57777777777776 3555443 567777777777763 34
Q ss_pred ccccccccCCeeecCCccccccCCccc----cCCCCCcEEeCcCcccc
Q 011653 281 FDIGNLKVLLGINLSENNLSGDMPATI----GGLKSLQIMDLAYNRLE 324 (480)
Q Consensus 281 ~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~ 324 (480)
..+. ..|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 384 ~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4332 35677777777776 444433 33466677777777765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=7.9e-21 Score=193.56 Aligned_cols=265 Identities=23% Similarity=0.346 Sum_probs=204.3
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEe
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 95 (480)
.+...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++. +|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence 46788999999998 8998764 58999999999998 6777664 589999999999984 565553 4799999
Q ss_pred ccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcc
Q 011653 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (480)
Q Consensus 96 l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 175 (480)
+++|.+...| ..+. .+|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|+++
T Consensus 248 Ls~N~L~~LP------~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 248 LSINRITELP------ERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred CcCCccCcCC------hhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 9999998776 3332 47999999999998 5776543 57999999999998 4666553 479999999
Q ss_pred cccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccC
Q 011653 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVI 255 (480)
Q Consensus 176 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 255 (480)
+|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +
T Consensus 313 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-L 382 (754)
T PRK15370 313 SNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-L 382 (754)
T ss_pred CCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-C
Confidence 999984 55543 3689999999999885 666553 78999999999987 5676553 689999999999984 5
Q ss_pred CccccCCCCCCEEecCCCccCCCCCccc----cccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccc
Q 011653 256 PSTFWRLKDILFLDFSSNLLVGTLSFDI----GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEG 325 (480)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 325 (480)
|..+. ..|+.|++++|.+. .+|..+ ..++.+..+++.+|.++. ..+.+|+.+ ++.+.+.|
T Consensus 383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~g 446 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQG 446 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccC
Confidence 66554 46899999999997 445443 445788999999999873 234455555 34444433
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-22 Score=180.09 Aligned_cols=201 Identities=27% Similarity=0.277 Sum_probs=117.5
Q ss_pred cccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCC
Q 011653 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSL 241 (480)
Q Consensus 162 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 241 (480)
.|..+++|++|+|++|.+++.-+.+|.....+++|.|..|++.......|.++..|+.|+|.+|+++..-|..|..+.+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 45667777777777777777777777777777777777777765555667777777777777777777777777777777
Q ss_pred CEEEcCCcccccc-----CCccc-----------cCCCCCCEEecCCCccCC---CCCcccc---------ccccCCe-e
Q 011653 242 RFLYLGSNRFTSV-----IPSTF-----------WRLKDILFLDFSSNLLVG---TLSFDIG---------NLKVLLG-I 292 (480)
Q Consensus 242 ~~L~l~~n~~~~~-----~~~~~-----------~~~~~L~~L~l~~n~l~~---~~~~~~~---------~~~~L~~-L 292 (480)
.+|++-.|.+.-. ..+|+ +....++.+.+++..+.. ..|++.+ .++.+.+ .
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVv 428 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVV 428 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhH
Confidence 7777776654311 00010 111223344444433211 1111110 1111211 1
Q ss_pred ecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccC
Q 011653 293 NLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369 (480)
Q Consensus 293 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n 369 (480)
..++..+. .+|..+. ..-.++++.+|.++ .+|.. .+.+| .+|+++|+++-..-..|.+++.|.++-+++|
T Consensus 429 RcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 429 RCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 22222222 3333221 13346777777777 56665 45666 7888888877555556667777777777765
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=4.4e-21 Score=181.83 Aligned_cols=216 Identities=23% Similarity=0.295 Sum_probs=109.4
Q ss_pred ccccCCCCCCEEECcCCcccccCchhHhhccc--cCcEEEeecccCcc----cCcccccCC-CCCCEEEccccccccc--
Q 011653 112 SSLANCKKLRSLNFIGNPLDGFLPSSIGNLSK--SLETLGIANCSISG----NIPPAISNL-SNLLTLVLEGNKLTGP-- 182 (480)
Q Consensus 112 ~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~--~L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~~~~~-- 182 (480)
..+..+++|+.|++++|.+.+..+..+..+.. +|++|++++|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34555667777777777666555555554421 27777777766652 222334445 6667777777666532
Q ss_pred --CCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCcccccc----CC
Q 011653 183 --IPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV----IP 256 (480)
Q Consensus 183 --~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~----~~ 256 (480)
++..+..+++|++|++++|.+.+.... .++..+..+++|+.|++++|.+++. +.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIR--------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHH--------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 122334445555555555554421000 1111222233444444444443321 12
Q ss_pred ccccCCCCCCEEecCCCccCCCCCcccc-----ccccCCeeecCCccccc----cCCccccCCCCCcEEeCcCcccccc-
Q 011653 257 STFWRLKDILFLDFSSNLLVGTLSFDIG-----NLKVLLGINLSENNLSG----DMPATIGGLKSLQIMDLAYNRLEGQ- 326 (480)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~- 326 (480)
..+..+++|+.|++++|.+.+.....+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.++..
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 2333445555555555555432221111 12566777777776652 2333445557777788877777744
Q ss_pred ---CCccccCC-CCCCEEEccCCcc
Q 011653 327 ---IPESFDDL-TSLEVMNLSNNKI 347 (480)
Q Consensus 327 ---~p~~~~~l-~~L~~L~l~~n~l 347 (480)
+...+... +.|+.+++.+|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCCC
Confidence 33333333 5677777776653
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=3.8e-21 Score=182.30 Aligned_cols=157 Identities=24% Similarity=0.295 Sum_probs=113.2
Q ss_pred CCCCEEEccCccccc----cCCccCCCCCCCCEEEcCCcccccc----CCccccCCCCCCEEecCCCccCCCC----Ccc
Q 011653 215 DRLDKLVLLGNKFSG----SIPSCLSNLTSLRFLYLGSNRFTSV----IPSTFWRLKDILFLDFSSNLLVGTL----SFD 282 (480)
Q Consensus 215 ~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~ 282 (480)
++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+.. ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 566666666666652 2334456677888999998888742 3344556689999999999987543 334
Q ss_pred ccccccCCeeecCCccccccCCcccc-----CCCCCcEEeCcCccccc----cCCccccCCCCCCEEEccCCccccc---
Q 011653 283 IGNLKVLLGINLSENNLSGDMPATIG-----GLKSLQIMDLAYNRLEG----QIPESFDDLTSLEVMNLSNNKISGS--- 350 (480)
Q Consensus 283 ~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~--- 350 (480)
+..+++|++|++++|.+++.....+. ..+.|+.|++++|.+++ .+...+..+++|+++++++|.++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 56788999999999999863332222 24799999999999872 2445566778999999999999854
Q ss_pred -CccccccC-CCCCEEECccCcc
Q 011653 351 -IPKSMEKL-FYLRELNLSFNEL 371 (480)
Q Consensus 351 -~p~~l~~~-~~L~~l~l~~n~~ 371 (480)
+...+... +.|+.+++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 33344444 6788999888764
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=3.4e-21 Score=172.61 Aligned_cols=296 Identities=22% Similarity=0.249 Sum_probs=171.6
Q ss_pred cCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccC-cccCCCCCccc
Q 011653 31 SLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAY-NNLTSSTSKLS 109 (480)
Q Consensus 31 ~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~ 109 (480)
++|..+. +.-.+++|..|.|+..-+.+|..+++|+.|||++|.|+.+-|++|.++..|..|.+.+ |+|+..|.
T Consensus 60 eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--- 133 (498)
T KOG4237|consen 60 EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK--- 133 (498)
T ss_pred cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh---
Confidence 5565543 4556666666666644445566666666666666666666666666666665555443 66665543
Q ss_pred ccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcc-cccCCCCCCEEEcccccccccCCcCcC
Q 011653 110 FLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPP-AISNLSNLLTLVLEGNKLTGPIPTTFG 188 (480)
Q Consensus 110 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~ 188 (480)
..|.++..|+.|.+.-|++.-...+.+..+ ++|..|.+.+|.+. .++. .+..+..++.+.+..|.+.. ..
T Consensus 134 --~~F~gL~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dC 204 (498)
T KOG4237|consen 134 --GAFGGLSSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DC 204 (498)
T ss_pred --hHhhhHHHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----cc
Confidence 455555556666655555554444445554 45555555555554 2332 44555555555555544210 11
Q ss_pred CCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCC-CCCCCEEEcCCccccccCC-ccccCCCCCC
Q 011653 189 RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSN-LTSLRFLYLGSNRFTSVIP-STFWRLKDIL 266 (480)
Q Consensus 189 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~ 266 (480)
+++.+.... ...|..++...-..-..+.+.++...-+..+.. ...+..--.+.+...+..| ..|..+++|+
T Consensus 205 nL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 205 NLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 111111110 011222223332333333333333222222211 1111111122233333334 3567788888
Q ss_pred EEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCc
Q 011653 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 267 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 346 (480)
.|+|++|.+++.-+.+|.....+++|.|..|++...-...|.+++.|+.|+|.+|+++-..|.+|..+.+|..|+|-.|+
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 88888888888888888888888888888888876666778888889999999999887788888888888888888887
Q ss_pred cc
Q 011653 347 IS 348 (480)
Q Consensus 347 l~ 348 (480)
+.
T Consensus 358 ~~ 359 (498)
T KOG4237|consen 358 FN 359 (498)
T ss_pred cc
Confidence 64
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=5e-20 Score=146.61 Aligned_cols=164 Identities=27% Similarity=0.481 Sum_probs=123.5
Q ss_pred CCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCC
Q 011653 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 118 (480)
.+.+++.|.|++|+++ .+|+.++.+.+|+.|++++|++. ..|..++.+++|+.|+++.|.+...| ..|+.+|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lp------rgfgs~p 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILP------RGFGSFP 102 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCc------cccCCCc
Confidence 4677777777777777 66777777778888888877776 45666777788888888777777666 6777778
Q ss_pred CCCEEECcCCccc-ccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCcee
Q 011653 119 KLRSLNFIGNPLD-GFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLF 197 (480)
Q Consensus 119 ~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 197 (480)
.|++||+.+|.+. ..+|..|..+ ..|+.|.+++|.+. .+|+.++++++||.|.+..|.+. .+|..++.+..|++|+
T Consensus 103 ~levldltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhhccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 8888888777765 3467666666 56888888888887 77888888888888888888877 6777888888888888
Q ss_pred cccccccccCCccCCCC
Q 011653 198 LAFNKLVGSCPDELCHL 214 (480)
Q Consensus 198 l~~n~~~~~~~~~~~~~ 214 (480)
+.+|+++ .+|..++++
T Consensus 180 iqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANL 195 (264)
T ss_pred cccceee-ecChhhhhh
Confidence 8888887 555555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-19 Score=144.46 Aligned_cols=157 Identities=32% Similarity=0.595 Sum_probs=87.0
Q ss_pred hcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCC
Q 011653 13 FNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92 (480)
Q Consensus 13 ~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 92 (480)
.++++.+.|.+|.|.++ .+|+.+. .+.+|+.|++.+|+++ .+|.++..+++|+.|+++-|.+. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 34445555555555555 5555555 4555555555555555 55555555555555555555554 4455555555555
Q ss_pred EEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEE
Q 011653 93 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTL 172 (480)
Q Consensus 93 ~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 172 (480)
.|++.+|++.... ++..|..+..|+.|.+++|.+. .+|..++++ ++||.|.+++|.+- .+|..++.++.|++|
T Consensus 106 vldltynnl~e~~----lpgnff~m~tlralyl~dndfe-~lp~dvg~l-t~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNENS----LPGNFFYMTTLRALYLGDNDFE-ILPPDVGKL-TNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhcccccccccc----CCcchhHHHHHHHHHhcCCCcc-cCChhhhhh-cceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 5555555554431 1144445555555555555555 455555555 45555555555554 455555555555555
Q ss_pred Eccccccc
Q 011653 173 VLEGNKLT 180 (480)
Q Consensus 173 ~l~~n~~~ 180 (480)
.+.+|+++
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 55555555
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=9.8e-14 Score=141.37 Aligned_cols=113 Identities=36% Similarity=0.599 Sum_probs=103.7
Q ss_pred CCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccC
Q 011653 265 ILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSN 344 (480)
Q Consensus 265 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 344 (480)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCccccccC-CCCCEEECccCcccccCCC
Q 011653 345 NKISGSIPKSMEKL-FYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 345 n~l~~~~p~~l~~~-~~L~~l~l~~n~~~~~~p~ 377 (480)
|.++|.+|..+... ..+..+++.+|+..|..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999988764 4677899999987776654
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=2.1e-14 Score=135.32 Aligned_cols=169 Identities=31% Similarity=0.436 Sum_probs=94.9
Q ss_pred ceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCc
Q 011653 20 IIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYN 99 (480)
Q Consensus 20 ~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 99 (480)
..|++.|.|. ++|..+. .+..|..+.|+.|.+. .+|..++++..|.+++|+.|+++ ..|..+..|+ |+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 4455555555 5665555 4555666666555555 55556666666666666666555 3344444444 556666666
Q ss_pred ccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccc
Q 011653 100 NLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKL 179 (480)
Q Consensus 100 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 179 (480)
+++..| ..++..+.|..||.+.|.+. .+|..++.+ .+|+.|.+++|++. .+|..+. .-.|..||+++|++
T Consensus 154 kl~~lp------~~ig~~~tl~~ld~s~nei~-slpsql~~l-~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 154 KLTSLP------EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL-TSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred ccccCC------cccccchhHHHhhhhhhhhh-hchHHhhhH-HHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce
Confidence 665554 44445555556666665555 455555555 45555555555555 4555555 23455556666655
Q ss_pred cccCCcCcCCCCCCCceeccccccc
Q 011653 180 TGPIPTTFGRLQKLQGLFLAFNKLV 204 (480)
Q Consensus 180 ~~~~~~~~~~~~~L~~L~l~~n~~~ 204 (480)
+ .+|..|.++..|++|.|.+|.+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC
Confidence 5 45555556666666666655554
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=8.5e-12 Score=127.31 Aligned_cols=109 Identities=25% Similarity=0.440 Sum_probs=101.1
Q ss_pred CCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCc
Q 011653 240 SLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLA 319 (480)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 319 (480)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCccccCC-CCCCEEEccCCccc
Q 011653 320 YNRLEGQIPESFDDL-TSLEVMNLSNNKIS 348 (480)
Q Consensus 320 ~n~l~~~~p~~~~~l-~~L~~L~l~~n~l~ 348 (480)
+|+++|.+|..+..+ .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999988763 46778999988654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=6.2e-12 Score=122.65 Aligned_cols=179 Identities=34% Similarity=0.478 Sum_probs=86.7
Q ss_pred CCCCEEECcCCcccccCchhHhhccc-cCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCce
Q 011653 118 KKLRSLNFIGNPLDGFLPSSIGNLSK-SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGL 196 (480)
Q Consensus 118 ~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 196 (480)
+.++.|++.+|.++ .+|...+.. . +|+.|++++|++. .+|..+..+++|+.|+++.|+++ .+|...+..++|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~-~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLL-KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccc-hhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 44455555554444 333333332 2 4555555555544 33344445555555555555554 233333345555555
Q ss_pred ecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccC
Q 011653 197 FLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV 276 (480)
Q Consensus 197 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 276 (480)
++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..++.+++|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 55555554 33333333344555555555322 233444555555555555555442 2444555555666666666555
Q ss_pred CCCCccccccccCCeeecCCccccccCCc
Q 011653 277 GTLSFDIGNLKVLLGINLSENNLSGDMPA 305 (480)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 305 (480)
.... ++...+++.|++++|.+....+.
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccc--ccccCccCEEeccCccccccchh
Confidence 3333 55556666666666666544443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=6.5e-12 Score=122.50 Aligned_cols=200 Identities=32% Similarity=0.450 Sum_probs=120.2
Q ss_pred EEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCC-CCCEEECcCCcccccCchhHhhccccCcE
Q 011653 69 LLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK-KLRSLNFIGNPLDGFLPSSIGNLSKSLET 147 (480)
Q Consensus 69 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 147 (480)
.+++..+.+...+ ..+..++.++.+++.+|.++..+ ....... +|+.|++++|.+. .+|..+..+ +.|+.
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~------~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l-~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIP------PLIGLLKSNLKELDLSDNKIE-SLPSPLRNL-PNLKN 167 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCc------cccccchhhcccccccccchh-hhhhhhhcc-ccccc
Confidence 4555555553221 22334456666666666666554 3333442 6666666666665 444555555 56777
Q ss_pred EEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccc
Q 011653 148 LGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKF 227 (480)
Q Consensus 148 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 227 (480)
|+++.|+++ .+|...+..+.|+.|++++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++
T Consensus 168 L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 168 LDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred cccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 777777666 45555546667777777777666 45554445555777777776432 3445566666666666666665
Q ss_pred cccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccc
Q 011653 228 SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDI 283 (480)
Q Consensus 228 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 283 (480)
. .++..++.+++++.|++++|.++...+ +....+++.|++++|.+....+...
T Consensus 245 ~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 245 E-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred e-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 5 225556667777777777777764322 6667777777777777766555443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.3e-13 Score=129.96 Aligned_cols=179 Identities=27% Similarity=0.410 Sum_probs=156.7
Q ss_pred ccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCccccc
Q 011653 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (480)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 86 (480)
.+|..++.|..|+.+.+..|.+. .||..+. ++..|+.++|+.|.++ .+|..+..|+ |+.|-+++|+++ .+|..++
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig 163 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG 163 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence 57889999999999999999998 9999999 8999999999999998 8899998887 999999999998 6788899
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCC
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNL 166 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 166 (480)
...+|..|+.+.|.+...| ..++.+.+|+.|.+..|++. .+|+.++.+ .|..||++.|+++ .+|-.|.+|
T Consensus 164 ~~~tl~~ld~s~nei~slp------sql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis-~iPv~fr~m 233 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSLP------SQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS-YLPVDFRKM 233 (722)
T ss_pred cchhHHHhhhhhhhhhhch------HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-ecchhhhhh
Confidence 8999999999999998877 78999999999999999998 788888876 4999999999998 899999999
Q ss_pred CCCCEEEcccccccccCCcCcC---CCCCCCceecccc
Q 011653 167 SNLLTLVLEGNKLTGPIPTTFG---RLQKLQGLFLAFN 201 (480)
Q Consensus 167 ~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n 201 (480)
+.|++|.|.+|.+. ..|..+. ...-.++|+..-+
T Consensus 234 ~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 99999999999988 4454442 3333456666555
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=5.4e-13 Score=118.78 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=21.1
Q ss_pred CCCCCCCCEEEcCCcccccc----CCccccCCCCCCEEecCCCccC
Q 011653 235 LSNLTSLRFLYLGSNRFTSV----IPSTFWRLKDILFLDFSSNLLV 276 (480)
Q Consensus 235 l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 276 (480)
+..+++|+.|||.+|.++.. +...++.+++|+.|++++|.+.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 44555566666665555421 2234444455555555555544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.1e-12 Score=116.39 Aligned_cols=211 Identities=21% Similarity=0.156 Sum_probs=106.0
Q ss_pred CCCCCcEEEcccCcceecCC--cccccCCCCCEEeccCCcccccCc--ccccCCCCCCEEeccCcccCCCCCcccccccc
Q 011653 39 SLPTVEHLNLALNRFSGTIP--SSITNASKLTLLELGGNTFSGLIP--DTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSL 114 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 114 (480)
++.+|+.+.|.++... ..+ .....|++++.|||+.|-++...+ ....++++|+.|+++.|.+....+. ..-
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NTT 193 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cch
Confidence 4555555555555443 222 234455555566665555443321 2233555666666665555433110 011
Q ss_pred cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccC-CcCcCCCCCC
Q 011653 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPI-PTTFGRLQKL 193 (480)
Q Consensus 115 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L 193 (480)
..+++|+.|.+++|.++-.--.++....++|+.|++..|............+..|+.|+|++|++.... -...+.++.|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 234556666666665552212222222255666666665322222222334455666666666554221 1234556666
Q ss_pred Cceeccccccccc-CCcc-----CCCCCCCCEEEccCccccc-cCCccCCCCCCCCEEEcCCcccccc
Q 011653 194 QGLFLAFNKLVGS-CPDE-----LCHLDRLDKLVLLGNKFSG-SIPSCLSNLTSLRFLYLGSNRFTSV 254 (480)
Q Consensus 194 ~~L~l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~ 254 (480)
..|+++.+.+... .|+. ...+++|++|+++.|++.. ..-..+..+++|+.|.+..|.+..+
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 6666666665432 2222 3456788888888888741 1112345567788888777877643
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.9e-12 Score=116.57 Aligned_cols=164 Identities=24% Similarity=0.221 Sum_probs=109.1
Q ss_pred ccCCCCCEEeccCCcccccCc-ccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhh
Q 011653 62 TNASKLTLLELGGNTFSGLIP-DTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGN 140 (480)
Q Consensus 62 ~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 140 (480)
.++.+|+.+.|.+........ .....|++++.|+|+.|-+..... +..-...+|+|+.|+++.|.+..........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH---HHHHHHhcccchhcccccccccCCccccchh
Confidence 457788888888877653322 245678899999999888876521 1144567888999999998887554444444
Q ss_pred ccccCcEEEeecccCccc-CcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccccccc-CCccCCCCCCCC
Q 011653 141 LSKSLETLGIANCSISGN-IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGS-CPDELCHLDRLD 218 (480)
Q Consensus 141 ~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~ 218 (480)
..++|+.|.++.|.++.. +-..+..+|+|+.|+|.+|.....-.....-++.|++|+|++|++... .-...+.++.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 447888888888887642 333445678888888888853323333445567788888888776522 113455666777
Q ss_pred EEEccCcccc
Q 011653 219 KLVLLGNKFS 228 (480)
Q Consensus 219 ~L~l~~n~l~ 228 (480)
.|+++.+.+.
T Consensus 275 ~Lnls~tgi~ 284 (505)
T KOG3207|consen 275 QLNLSSTGIA 284 (505)
T ss_pred hhhccccCcc
Confidence 7777666654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.6e-11 Score=99.92 Aligned_cols=131 Identities=28% Similarity=0.344 Sum_probs=48.7
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
+.++.+++.|+|++|.++ .|. .++..+.+|+.|++++|.++ .+. .+..+++|++|++++|.++...+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 456667899999999887 554 45435788999999999987 443 57788999999999999885433222468899
Q ss_pred CEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCc---hhHhhccccCcEEEee
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP---SSIGNLSKSLETLGIA 151 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p---~~~~~~~~~L~~L~l~ 151 (480)
+.|++++|++..... ...+..+++|++|++.+|++...-- .-+..+ ++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~----l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNE----LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCC----CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred CEEECcCCcCCChHH----hHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCE
Confidence 999999999877632 2667788999999999988874311 113333 556666543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=4.6e-12 Score=112.98 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=114.9
Q ss_pred ccCCCCCCEEEcccccccccCCc----CcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCC
Q 011653 163 ISNLSNLLTLVLEGNKLTGPIPT----TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNL 238 (480)
Q Consensus 163 l~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l 238 (480)
+..+++|++|+||+|-+...-+. -+.++..|++|.|.+|.+...-...++. .|..|. ......+-
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~ 156 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASK 156 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCC
Confidence 34455666666666655422221 2344566666666666553211111000 011110 11122334
Q ss_pred CCCCEEEcCCcccccc----CCccccCCCCCCEEecCCCccCCC----CCccccccccCCeeecCCcccccc----CCcc
Q 011653 239 TSLRFLYLGSNRFTSV----IPSTFWRLKDILFLDFSSNLLVGT----LSFDIGNLKVLLGINLSENNLSGD----MPAT 306 (480)
Q Consensus 239 ~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~ 306 (480)
+.|+++...+|++... +...|...+.|+.+.+..|.+... +...+..+++|+.|||.+|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 5666777666665432 234455566777777777766422 223456777888888888877532 3445
Q ss_pred ccCCCCCcEEeCcCccccccCCccc-----cCCCCCCEEEccCCcccc----cCccccccCCCCCEEECccCccc
Q 011653 307 IGGLKSLQIMDLAYNRLEGQIPESF-----DDLTSLEVMNLSNNKISG----SIPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 307 ~~~~~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~----~~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
+..+++|+.|++++|.+...-..++ ...++|+++.+.+|.++. .+..++...+.|..|++++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6677888888888888765433332 236789999999998864 23345566788999999999984
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2e-11 Score=106.68 Aligned_cols=134 Identities=29% Similarity=0.370 Sum_probs=85.1
Q ss_pred cccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCC
Q 011653 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSL 241 (480)
Q Consensus 162 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 241 (480)
.+.....|+++||++|.++ .+..+..-.|.++.|+++.|.+... +.+..+++|+.|+|++|.++ .+..+-.++-+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3334456666666666666 4555566666666666666666522 23556667777777777665 333444456667
Q ss_pred CEEEcCCccccccCCccccCCCCCCEEecCCCccCCC-CCccccccccCCeeecCCccccc
Q 011653 242 RFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT-LSFDIGNLKVLLGINLSENNLSG 301 (480)
Q Consensus 242 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~ 301 (480)
+.|.++.|.+... +.+..+-+|..||+++|++... --..+++++.|+.+.|.+|.+.+
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777777766432 3455556677777777777542 22357888889999999988874
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.3e-10 Score=97.28 Aligned_cols=127 Identities=29% Similarity=0.388 Sum_probs=41.0
Q ss_pred cccCCCCCEEeccCCcccccCccccc-CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHh
Q 011653 61 ITNASKLTLLELGGNTFSGLIPDTIG-NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIG 139 (480)
Q Consensus 61 ~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~ 139 (480)
+.++.++++|+|++|.++.+ ..++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++ .+...+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-------~~l~~L~~L~~L~L~~N~I~-~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-------EGLPGLPRLKTLDLSNNRIS-SISEGLD 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---------TT----TT--EEE--SS----S-CHHHH
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-------cCccChhhhhhcccCCCCCC-ccccchH
Confidence 34445667777777776643 2344 466777777777777655 44666677777777777776 3444443
Q ss_pred -hccccCcEEEeecccCccc-CcccccCCCCCCEEEcccccccccCCc----CcCCCCCCCceecc
Q 011653 140 -NLSKSLETLGIANCSISGN-IPPAISNLSNLLTLVLEGNKLTGPIPT----TFGRLQKLQGLFLA 199 (480)
Q Consensus 140 -~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~ 199 (480)
.+ ++|++|++++|++... .-..+..+++|++|++.+|.++.. +. .+..+|+|+.||-.
T Consensus 85 ~~l-p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 KNL-PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HH--TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred HhC-CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 34 5677777777776531 124456677788888887777632 21 23456666666643
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=6.7e-11 Score=123.41 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=39.6
Q ss_pred cccceecccccc-cccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEe
Q 011653 17 TLKIIILINNSL-SGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (480)
Q Consensus 17 ~L~~L~l~~~~~-~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 95 (480)
+|+.|-+..|.. ...++..++..++.|+.|||++|.--+.+|..++++-+|++|++++..+. .+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 455555544431 12444443334555555555554433445555555555555555555544 3444455555555555
Q ss_pred ccCc
Q 011653 96 LAYN 99 (480)
Q Consensus 96 l~~n 99 (480)
+..+
T Consensus 625 l~~~ 628 (889)
T KOG4658|consen 625 LEVT 628 (889)
T ss_pred cccc
Confidence 5443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=3.8e-11 Score=104.91 Aligned_cols=130 Identities=25% Similarity=0.286 Sum_probs=86.0
Q ss_pred CCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCC
Q 011653 88 LRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLS 167 (480)
Q Consensus 88 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 167 (480)
++.|++++|++|.++... +++.-.|.++.|+++.|.+.. + ..+..+ ++|+.|||++|.++ .+..+-.++-
T Consensus 283 Wq~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~i~~-v-~nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID------ESVKLAPKLRRLILSQNRIRT-V-QNLAEL-PQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchhhhh------hhhhhccceeEEeccccceee-e-hhhhhc-ccceEeecccchhH-hhhhhHhhhc
Confidence 466777777777776654 455666777777777777762 2 235555 57777787777766 3333445666
Q ss_pred CCCEEEcccccccccCCcCcCCCCCCCceeccccccccc-CCccCCCCCCCCEEEccCccccc
Q 011653 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGS-CPDELCHLDRLDKLVLLGNKFSG 229 (480)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~ 229 (480)
+++.|.|++|.+... +.++++-+|..||+++|++... -...++++|.|+.+.|.+|.+.+
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777777777766421 3456677777778877777532 23456777778888887777764
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=2.2e-10 Score=119.57 Aligned_cols=125 Identities=26% Similarity=0.368 Sum_probs=56.9
Q ss_pred cccceecccccccccCchhhhcCCCCCcEEEcccCc--ceecCCc-ccccCCCCCEEeccCCcccccCcccccCCCCCCE
Q 011653 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNR--FSGTIPS-SITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (480)
Q Consensus 17 ~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~--~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 93 (480)
..+...+-+|.+. .++... .+++|++|-+..|. +. .++. .|..++.|++|||++|.=-+..|..++.+-+||+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred heeEEEEeccchh-hccCCC--CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3444444444444 344433 23455555555543 22 2222 2344555555555544333344555555555555
Q ss_pred EeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeec
Q 011653 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIAN 152 (480)
Q Consensus 94 L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~ 152 (480)
|+++...+...| ..+.++..|.+|++..+.....+|.....+ .+|++|.+..
T Consensus 600 L~L~~t~I~~LP------~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~ 651 (889)
T KOG4658|consen 600 LDLSDTGISHLP------SGLGNLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPR 651 (889)
T ss_pred ccccCCCccccc------hHHHHHHhhheeccccccccccccchhhhc-ccccEEEeec
Confidence 555555544434 445555555555555443332333333333 3455555443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=2.3e-10 Score=111.80 Aligned_cols=244 Identities=29% Similarity=0.319 Sum_probs=124.6
Q ss_pred CCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCC
Q 011653 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (480)
Q Consensus 40 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~ 119 (480)
+..+..+++..|.+. .+-..+..+++|+.|++.+|.+.... ..+..+.+|++|++++|.++.. ..+..++.
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i-------~~l~~l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL-------EGLSTLTL 141 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc-------cchhhccc
Confidence 445555555555554 22233455556666666666655331 1144566666666666666554 34555555
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCc-ccccCCCCCCEEEcccccccccCCcCcCCCCCCCceec
Q 011653 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP-PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFL 198 (480)
Q Consensus 120 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 198 (480)
|+.|++++|.+... ..+..+ ..|+.+++++|.++..-+ . +..+.+++.+++.+|.+... ..+..+..+..+++
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSL 215 (414)
T ss_pred hhhheeccCcchhc--cCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence 66666666655521 112222 456666666666553222 1 35566666666666665421 22334444444455
Q ss_pred ccccccccCCccCCCCC--CCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccC
Q 011653 199 AFNKLVGSCPDELCHLD--RLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV 276 (480)
Q Consensus 199 ~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 276 (480)
..|.++..-+ +..+. +|+.+++++|.+. ..+..+..+..+..+++.+|++... ..+...+.+..+....|.+.
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 6665543221 11122 2666666666665 2224455666777777777766532 22333344455555555543
Q ss_pred CC---CCc-cccccccCCeeecCCccccccC
Q 011653 277 GT---LSF-DIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 277 ~~---~~~-~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
.. ... .....+.++...+..|.+....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred chhhhhccccccccccccccccccCcccccc
Confidence 21 111 1345567777777777665433
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2e-10 Score=112.16 Aligned_cols=269 Identities=25% Similarity=0.268 Sum_probs=186.4
Q ss_pred CCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCC
Q 011653 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (480)
Q Consensus 40 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~ 119 (480)
.+.++.++...+...+.--. ...+..++.+.+..|.+.. +-..+..+.+|..+++..|.+.... ..+..+++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~------~~l~~~~~ 119 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE------NLLSSLVN 119 (414)
T ss_pred cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc------cchhhhhc
Confidence 34555555555543311111 1456777888888888874 3344778999999999999998873 22788999
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCC-cCcCCCCCCCceec
Q 011653 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQGLFL 198 (480)
Q Consensus 120 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l 198 (480)
|++|++++|.++...+ +..+ +.|+.|++.+|.++. ...+..+..|+.+++++|.++..-+ . ...+.+++.+++
T Consensus 120 L~~L~ls~N~I~~i~~--l~~l-~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l 193 (414)
T KOG0531|consen 120 LQVLDLSFNKITKLEG--LSTL-TLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL 193 (414)
T ss_pred chheeccccccccccc--hhhc-cchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence 9999999999985433 4455 469999999999873 2456668999999999999985444 2 578899999999
Q ss_pred ccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCC--CCCEEEcCCccccccCCccccCCCCCCEEecCCCccC
Q 011653 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLT--SLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV 276 (480)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 276 (480)
..|.+... ..+..+..+..+++..|.++..-+ +..+. .|+.++++.|.+.. .+..+..+..+..+++.+|.+.
T Consensus 194 ~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 194 GGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 99988632 334445555556788887763322 22233 38999999998873 3356667888999999999886
Q ss_pred CCCCccccccccCCeeecCCcccccc---CCcc-ccCCCCCcEEeCcCccccccCCc
Q 011653 277 GTLSFDIGNLKVLLGINLSENNLSGD---MPAT-IGGLKSLQIMDLAYNRLEGQIPE 329 (480)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~~~~L~~L~l~~n~l~~~~p~ 329 (480)
..-. +.....+..+....+.+... .... ....+.++.+.+..|......+.
T Consensus 269 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 269 NLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 4432 33455666667777766532 1111 45567888899999887755443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=5.5e-09 Score=71.75 Aligned_cols=59 Identities=34% Similarity=0.558 Sum_probs=30.9
Q ss_pred cCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCc
Q 011653 288 VLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 288 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 346 (480)
+|++|++++|+++...+..|..+++|+.|++++|++....|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333455555555555555555554444455555555555555554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=8.5e-09 Score=70.82 Aligned_cols=59 Identities=36% Similarity=0.605 Sum_probs=27.0
Q ss_pred CCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcc
Q 011653 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN 100 (480)
Q Consensus 42 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 100 (480)
+|++|++++|+++..-+..+.++++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333344444444444444444444444444444444444444443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=2.5e-09 Score=93.67 Aligned_cols=221 Identities=23% Similarity=0.202 Sum_probs=133.0
Q ss_pred ccccchhhhcCccccceeccccccccc-CchhhhcCCCCCcEEEcccCccee--cCCcccccCCCCCEEeccCCcccccC
Q 011653 5 VGMVSATIFNMSTLKIIILINNSLSGS-LPSRIGLSLPTVEHLNLALNRFSG--TIPSSITNASKLTLLELGGNTFSGLI 81 (480)
Q Consensus 5 ~g~~~~~~~~~~~L~~L~l~~~~~~~~-ip~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~ 81 (480)
.|..+-.++....++.+.+.++.+... -...++..+++++++||.+|.++. .+...+.+++.|++|+++.|.+...+
T Consensus 34 ~g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 34 AGLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI 113 (418)
T ss_pred cccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc
Confidence 344444555555666777777766521 123455578999999999999973 45556788999999999999987554
Q ss_pred cccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCccccc--CchhHhhccccCcEEEeecccCcc--
Q 011653 82 PDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF--LPSSIGNLSKSLETLGIANCSISG-- 157 (480)
Q Consensus 82 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~--~p~~~~~~~~~L~~L~l~~n~~~~-- 157 (480)
-..-..+.+|+.|.|.+..+.=... -+.+..+|.++.|+++.|.+... -........+.+++|++..|...-
T Consensus 114 ~~lp~p~~nl~~lVLNgT~L~w~~~----~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~ 189 (418)
T KOG2982|consen 114 KSLPLPLKNLRVLVLNGTGLSWTQS----TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL 189 (418)
T ss_pred ccCcccccceEEEEEcCCCCChhhh----hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH
Confidence 3322467789999998776643311 15678889999999998843211 111122233456667766664320
Q ss_pred cCcccccCCCCCCEEEcccccccc-cCCcCcCCCCCCCceeccccccccc-CCccCCCCCCCCEEEccCccccc
Q 011653 158 NIPPAISNLSNLLTLVLEGNKLTG-PIPTTFGRLQKLQGLFLAFNKLVGS-CPDELCHLDRLDKLVLLGNKFSG 229 (480)
Q Consensus 158 ~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~ 229 (480)
.+...-.-++++..+.+..|.+.. .....+..++.+-.|+|+.+++... ..+.+..+++|..|.++++.+..
T Consensus 190 ~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 190 NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 111111224666667776665542 1223445556666677776666421 22445566666666666666553
No 44
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.65 E-value=1.7e-08 Score=95.98 Aligned_cols=39 Identities=54% Similarity=0.866 Sum_probs=36.9
Q ss_pred ccccccHHHHHHHHhccccCCccccCCCcceEEEEcCCC
Q 011653 442 TLRRFSYLELLQATDNFAENNIIGRGGFGPFMEQDLKMG 480 (480)
Q Consensus 442 ~~~~~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~~G 480 (480)
..+.|+|+||.+||+||+++++||+||||+||||.++||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~ 99 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG 99 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC
Confidence 566899999999999999999999999999999999986
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.3e-10 Score=98.37 Aligned_cols=157 Identities=20% Similarity=0.127 Sum_probs=69.1
Q ss_pred CCCCCCCceecccccccccCCccCCCCCCCCEEEccCcc-ccc-cCCccCCCCCCCCEEEcCCccccccCCccc--cCCC
Q 011653 188 GRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNK-FSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTF--WRLK 263 (480)
Q Consensus 188 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~--~~~~ 263 (480)
..|.+|+.|.+.++++...+...+....+|+.|+++.+. ++. ...-.+.+|+.|++|+++.+.+....-..+ .--+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 344444444444444444444444444444444444432 110 001113344455555555544332211100 0123
Q ss_pred CCCEEecCCCcc---CCCCCccccccccCCeeecCCcc-ccccCCccccCCCCCcEEeCcCccccccCCc---cccCCCC
Q 011653 264 DILFLDFSSNLL---VGTLSFDIGNLKVLLGINLSENN-LSGDMPATIGGLKSLQIMDLAYNRLEGQIPE---SFDDLTS 336 (480)
Q Consensus 264 ~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~l~~ 336 (480)
+|+.|+++++.- ...+..-...+++|..|||++|. ++...-..|-.++.|++|.++.|.. .+|. .+...|+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcc
Confidence 445555554421 11121222455666666666543 3322233444556667777766653 2333 2455667
Q ss_pred CCEEEccCCc
Q 011653 337 LEVMNLSNNK 346 (480)
Q Consensus 337 L~~L~l~~n~ 346 (480)
|.+||+.++-
T Consensus 365 l~yLdv~g~v 374 (419)
T KOG2120|consen 365 LVYLDVFGCV 374 (419)
T ss_pred eEEEEecccc
Confidence 7777776653
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.2e-10 Score=96.33 Aligned_cols=177 Identities=25% Similarity=0.293 Sum_probs=78.9
Q ss_pred CcEEEcccCccee-cCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcc-cCCCCCcccccccccCCCCC
Q 011653 43 VEHLNLALNRFSG-TIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN-LTSSTSKLSFLSSLANCKKL 120 (480)
Q Consensus 43 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~~~~L 120 (480)
|+.+||+...++. .+...+..|++|+.|.+.++.+.+.+-..+.+-.+|+.++++.+. ++... . ---+.+|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~--~--~ll~~scs~L 262 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA--L--QLLLSSCSRL 262 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--H--HHHHHhhhhH
Confidence 5555555555542 222234455555555555555555555555555555555555432 22210 0 0224455555
Q ss_pred CEEECcCCcccccC-chhHhhccccCcEEEeecccCc---ccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCce
Q 011653 121 RSLNFIGNPLDGFL-PSSIGNLSKSLETLGIANCSIS---GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGL 196 (480)
Q Consensus 121 ~~L~l~~n~l~~~~-p~~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 196 (480)
..|++++|.+..+. ...+....++|+.|+++++.-. ..+..- ...|++|.+|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL------------------------~~rcp~l~~L 318 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL------------------------VRRCPNLVHL 318 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH------------------------HHhCCceeee
Confidence 55555555443222 1122223334444444443110 011111 1245555555
Q ss_pred eccccc-ccccCCccCCCCCCCCEEEccCccccccCCcc---CCCCCCCCEEEcCCc
Q 011653 197 FLAFNK-LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSC---LSNLTSLRFLYLGSN 249 (480)
Q Consensus 197 ~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~l~~n 249 (480)
||++|. ++......+.+++.|++|.++.|.. .+|.. +...++|.+|++-++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 555542 2222333444555666666655542 23322 345566666665443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=8.4e-08 Score=84.27 Aligned_cols=179 Identities=21% Similarity=0.217 Sum_probs=86.6
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCccc-CcccccC
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGN-IPPAISN 165 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~ 165 (480)
.++.++.++|.+|.++.... +..-+.++|.|++|+++.|++...|-..-... .+|++|-|.+..+... ....+..
T Consensus 69 ~~~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChhhhhhhhhc
Confidence 45677777777777765421 11345667777777777777653322110122 4677777777665432 3334456
Q ss_pred CCCCCEEEcccccccccC--Cc----------CcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCcccccc-CC
Q 011653 166 LSNLLTLVLEGNKLTGPI--PT----------TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS-IP 232 (480)
Q Consensus 166 l~~L~~L~l~~n~~~~~~--~~----------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p 232 (480)
+|.++.|.++.|++.-.. .. .+...+.+..++++-|++... ++++..+.+..|.+... -.
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhc
Confidence 677777777766432110 00 112222333333333333322 23445555555544211 11
Q ss_pred ccCCCCCCCCEEEcCCccccccC-CccccCCCCCCEEecCCCccC
Q 011653 233 SCLSNLTSLRFLYLGSNRFTSVI-PSTFWRLKDILFLDFSSNLLV 276 (480)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~ 276 (480)
.....++.+..|+++.+++...- -+.+..++.|+.|.++++.+.
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 22233444555566666554321 133444555555555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=9.5e-09 Score=100.44 Aligned_cols=180 Identities=26% Similarity=0.274 Sum_probs=115.0
Q ss_pred chhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcce----------ecCCcccccCCCCCEEeccCCccc
Q 011653 9 SATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFS----------GTIPSSITNASKLTLLELGGNTFS 78 (480)
Q Consensus 9 ~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~n~l~ 78 (480)
|-.|..++.||+|.+.+|++.. -..+..--..|+.|.. .++++ |.+..++ -.-.|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 5578899999999999998862 1111101123444332 22221 1111111 1235777777888776
Q ss_pred ccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCccc
Q 011653 79 GLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGN 158 (480)
Q Consensus 79 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~ 158 (480)
....++.-++.|+.|+|++|+++.. ..+..|++|++||++.|.+. .+|.. +....+|+.|.+++|.++..
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~~gc~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLR-HVPQL-SMVGCKLQLLNLRNNALTTL 247 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh-------HHHHhcccccccccccchhc-ccccc-chhhhhheeeeecccHHHhh
Confidence 3344566678888888888888766 56788888888888888887 45532 22223588888888877632
Q ss_pred CcccccCCCCCCEEEcccccccccC-CcCcCCCCCCCceeccccccc
Q 011653 159 IPPAISNLSNLLTLVLEGNKLTGPI-PTTFGRLQKLQGLFLAFNKLV 204 (480)
Q Consensus 159 ~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~ 204 (480)
..+.++.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+.
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 35677888888888888776421 123556777888888888764
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.2e-08 Score=99.89 Aligned_cols=125 Identities=27% Similarity=0.318 Sum_probs=61.5
Q ss_pred cCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCcc-CCCCCCCCEEEc
Q 011653 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDE-LCHLDRLDKLVL 222 (480)
Q Consensus 144 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l 222 (480)
.|.+.+.+.|.++ ....++.-++.|+.|+|++|+++.. +.+..|+.|++|||+.|.+. .+|.. ...| .|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 3444555555554 3444555555566666666665532 24555666666666666554 22221 1122 2555566
Q ss_pred cCccccccCCccCCCCCCCCEEEcCCccccccC-CccccCCCCCCEEecCCCcc
Q 011653 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVI-PSTFWRLKDILFLDFSSNLL 275 (480)
Q Consensus 223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l 275 (480)
.+|.++.. ..+.++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 65555421 12345555556666655544321 12233344455555555554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=4.2e-08 Score=76.08 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEcc
Q 011653 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343 (480)
Q Consensus 264 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 343 (480)
.|+..+|++|.+....+......+.++.+++++|.++ .+|..++.++.|+.|+++.|.+. ..|..+..+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 3444555555554333222234456666666666666 56666666677777777777666 455555556666666666
Q ss_pred CCcccccCccccccCCCCCEEECccCcccccCCCC
Q 011653 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378 (480)
Q Consensus 344 ~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~~ 378 (480)
+|.+. .+|..+.....+...++.++++.+..|..
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 66665 44433333233333444555665555543
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=8.7e-07 Score=77.02 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=48.8
Q ss_pred hhcCccccceeccccccccc----CchhhhcCCCCCcEEEcccCcce---ecC-------CcccccCCCCCEEeccCCcc
Q 011653 12 IFNMSTLKIIILINNSLSGS----LPSRIGLSLPTVEHLNLALNRFS---GTI-------PSSITNASKLTLLELGGNTF 77 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~----ip~~~~~~l~~L~~L~l~~~~~~---~~~-------~~~~~~~~~L~~L~l~~n~l 77 (480)
+..+..+..++||+|.+..+ +...+. +-++|+..+++.-... ..+ .+++.+|++|+..+|+.|-|
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34456677777777766532 233343 4566666666554221 112 23445666777777776666
Q ss_pred cccCccc----ccCCCCCCEEeccCcccC
Q 011653 78 SGLIPDT----IGNLRNLAWLGLAYNNLT 102 (480)
Q Consensus 78 ~~~~~~~----~~~l~~L~~L~l~~n~l~ 102 (480)
....|.. ++.-+.|++|.+++|.+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 5444433 234455666666666543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=4.7e-08 Score=75.79 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=37.9
Q ss_pred CCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcC
Q 011653 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (480)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 247 (480)
.|+..+|++|.+....+..-...+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 3444455555554322222223344555555555554 34444555555555555555544 333333344445555554
Q ss_pred Cccc
Q 011653 248 SNRF 251 (480)
Q Consensus 248 ~n~~ 251 (480)
+|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.8e-05 Score=74.82 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCc
Q 011653 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYN 99 (480)
Q Consensus 40 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 99 (480)
+.+++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+ ..+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 556666666666554 3441 1 1246666665432112333322 135555555554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.9e-05 Score=74.70 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=84.3
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCC-cccccCcccccCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGN-TFSGLIPDTIGNLRN 90 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 90 (480)
+..|++++.|++++|.++ .+| . -..+|+.|.+++|.--..+|..+. ++|++|++++| .+. .+|. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------c
Confidence 456899999999999988 888 2 245799999988654346676553 58999999988 554 3443 4
Q ss_pred CCEEeccCcccCCCCCcccccccccCC-CCCCEEECcCCccc--ccCchhHhhccccCcEEEeecccCcccCcccccCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANC-KKLRSLNFIGNPLD--GFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLS 167 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~--~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 167 (480)
|+.|++..+..... ..+ ++|+.|.+.++... ..+| ..++++|++|++++|... ..|..+. .
T Consensus 114 Le~L~L~~n~~~~L----------~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 114 VRSLEIKGSATDSI----------KNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred cceEEeCCCCCccc----------ccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--c
Confidence 67777765544322 112 24566666443211 1111 123457888888777644 3343333 4
Q ss_pred CCCEEEcccc
Q 011653 168 NLLTLVLEGN 177 (480)
Q Consensus 168 ~L~~L~l~~n 177 (480)
+|+.|+++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6777776654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.1e-06 Score=51.18 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=15.2
Q ss_pred CCcEEEcccCcceecCCcccccCCCCCEEeccCCccc
Q 011653 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFS 78 (480)
Q Consensus 42 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 78 (480)
+|++|++++|.++ .+|+.+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=3.9e-06 Score=73.05 Aligned_cols=213 Identities=20% Similarity=0.223 Sum_probs=126.5
Q ss_pred hhcCccccceecccccccc----cCchh-------hhcCCCCCcEEEcccCcceecCCcc----cccCCCCCEEeccCCc
Q 011653 12 IFNMSTLKIIILINNSLSG----SLPSR-------IGLSLPTVEHLNLALNRFSGTIPSS----ITNASKLTLLELGGNT 76 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~----~ip~~-------~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~ 76 (480)
+.+-++|+..+++.- |+| ++|+. +. .||+|+.++|+.|.|....|+. +.+-+.|.+|.+++|.
T Consensus 54 ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 54 IANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHh-cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 334466777766653 233 33332 22 6788888888888876555544 3455678888888886
Q ss_pred ccccCcccc-------------cCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccC-----chhH
Q 011653 77 FSGLIPDTI-------------GNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFL-----PSSI 138 (480)
Q Consensus 77 l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-----p~~~ 138 (480)
+...--..+ .+-+.|+......|.+...+... +...+..-.+|+++.+..|.+...- -..+
T Consensus 132 lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~-~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl 210 (388)
T COG5238 132 LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL-SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL 210 (388)
T ss_pred CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH-HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH
Confidence 642211112 23467888888888876653211 1123444467888888888765221 1112
Q ss_pred hhccccCcEEEeecccCcc----cCcccccCCCCCCEEEcccccccccCCc----Cc--CCCCCCCceecccccccccCC
Q 011653 139 GNLSKSLETLGIANCSISG----NIPPAISNLSNLLTLVLEGNKLTGPIPT----TF--GRLQKLQGLFLAFNKLVGSCP 208 (480)
Q Consensus 139 ~~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~--~~~~~L~~L~l~~n~~~~~~~ 208 (480)
..+ .+|+.||+.+|-++- .+...+...+.|+.|.+.+|-++..-.. .+ ...++|+.|...+|-+.+.+.
T Consensus 211 ~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 211 FYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred HHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 233 578888888887753 2334555667788888888876532211 12 145777888888776654332
Q ss_pred cc-------CCCCCCCCEEEccCcccc
Q 011653 209 DE-------LCHLDRLDKLVLLGNKFS 228 (480)
Q Consensus 209 ~~-------~~~~~~L~~L~l~~n~l~ 228 (480)
.. -..++-|..|.+.+|.+.
T Consensus 290 ~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 290 LDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred eeechhhhhhcccHHHHHHHHccCcch
Confidence 21 134666777777777765
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=4e-06 Score=85.94 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=77.2
Q ss_pred ccccceeccccc-ccccCchhhhcCCCCCcEEEcccCcce-ecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCE
Q 011653 16 STLKIIILINNS-LSGSLPSRIGLSLPTVEHLNLALNRFS-GTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (480)
Q Consensus 16 ~~L~~L~l~~~~-~~~~ip~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 93 (480)
.+|++||+++.. +...+|..++.-+|.|+.|.+.+-.+. +.......++++|..||+++.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578888888754 344667777777888888888876664 22334456778888888888887755 56778888888
Q ss_pred EeccCcccCCCCCcccccccccCCCCCCEEECcCCccc
Q 011653 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLD 131 (480)
Q Consensus 94 L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 131 (480)
|.+.+=.+.... .+..+.++.+|++||+|.....
T Consensus 200 L~mrnLe~e~~~----~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQ----DLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchh----hHHHHhcccCCCeeeccccccc
Confidence 887766665432 1256777888888888876544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.6e-05 Score=49.87 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=32.8
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcce
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFS 54 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~ 54 (480)
++|++|++++|.++ .+|..+. .+++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence 57999999999999 8999888 8999999999999998
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=2.9e-05 Score=64.82 Aligned_cols=103 Identities=26% Similarity=0.310 Sum_probs=54.7
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccccccc-CCccCCCCCCCCEEE
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGS-CPDELCHLDRLDKLV 221 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ 221 (480)
.....+||++|.+. --+.|..+++|..|.+..|+|+..-|.--.-+++|+.|.+.+|++... --+.+..|++|++|.
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45666777777664 223455666777777777777654444333456666666666665421 112234455566665
Q ss_pred ccCccccccC---CccCCCCCCCCEEEcC
Q 011653 222 LLGNKFSGSI---PSCLSNLTSLRFLYLG 247 (480)
Q Consensus 222 l~~n~l~~~~---p~~l~~l~~L~~L~l~ 247 (480)
+-+|.....- -..+..+++|+.||++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 5555544211 1123444555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=3.2e-05 Score=64.57 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=75.0
Q ss_pred ccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEecc
Q 011653 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (480)
Q Consensus 18 L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 97 (480)
=+.+++.+..+. .+ ..++.-+.+...+||++|.+. .+ +.+..++.|.+|.+++|.++.+.|.--.-+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 355666665443 22 224444667788899888875 22 346678889999999999887777654567789999999
Q ss_pred CcccCCCCCcccccccccCCCCCCEEECcCCccc
Q 011653 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLD 131 (480)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 131 (480)
+|++....+ +..+..||.|++|.+-+|+..
T Consensus 97 nNsi~~l~d----l~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGD----LDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred Ccchhhhhh----cchhccCCccceeeecCCchh
Confidence 988876632 256788888888888888765
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.4e-05 Score=82.08 Aligned_cols=141 Identities=17% Similarity=0.220 Sum_probs=101.7
Q ss_pred chhhh-cCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccc-cCccccc
Q 011653 9 SATIF-NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG-LIPDTIG 86 (480)
Q Consensus 9 ~~~~~-~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~ 86 (480)
|..++ -+|.|+.|.+.+-.+...--..++.++|+|+.||+++++++ .+ ..++++++|+.|.+.+=.+.. ..-.++-
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 33444 48999999999987764434455568999999999999998 33 688999999999999766653 2233466
Q ss_pred CCCCCCEEeccCcccCCCC-CcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEee
Q 011653 87 NLRNLAWLGLAYNNLTSST-SKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIA 151 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 151 (480)
+|++|+.||++.......+ ....+.+.-..+|+||.||.+++.+...+-+.+-.--++|+.+..-
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 8999999999987655443 1122234556689999999999988877666555433556555433
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.42 E-value=0.00074 Score=54.21 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=3.6
Q ss_pred cCCCCCCCceec
Q 011653 187 FGRLQKLQGLFL 198 (480)
Q Consensus 187 ~~~~~~L~~L~l 198 (480)
|..+.+|+.+.+
T Consensus 8 F~~~~~l~~i~~ 19 (129)
T PF13306_consen 8 FYNCSNLESITF 19 (129)
T ss_dssp TTT-TT--EEEE
T ss_pred HhCCCCCCEEEE
Confidence 333444444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.00068 Score=54.41 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=23.3
Q ss_pred cCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecC
Q 011653 210 ELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271 (480)
Q Consensus 210 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 271 (480)
.|..+++|+.+.+.. .+...-...|..+++|+.+.+..+ +.......|..++.++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 445555666666553 233333344555555555555543 333333344444445555543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.38 E-value=5e-06 Score=76.77 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=166.0
Q ss_pred cccceecccccccccCc--hhhhcCCCCCcEEEcccCc-ceecCCccc-ccCCCCCEEeccCC-cccccCcccc-cCCCC
Q 011653 17 TLKIIILINNSLSGSLP--SRIGLSLPTVEHLNLALNR-FSGTIPSSI-TNASKLTLLELGGN-TFSGLIPDTI-GNLRN 90 (480)
Q Consensus 17 ~L~~L~l~~~~~~~~ip--~~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~ 90 (480)
-|+.|.+.++.-.+.-+ .... .+++++.|++.++. ++...-..+ ..|+.|++|++..+ .++......+ ..+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~-~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFAS-NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhh-hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 57788888876444222 2333 78999999998885 332222223 46889999999884 5555444422 36889
Q ss_pred CCEEeccCcc-cCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhc---cccCcEEEeeccc-CcccC-ccccc
Q 011653 91 LAWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNL---SKSLETLGIANCS-ISGNI-PPAIS 164 (480)
Q Consensus 91 L~~L~l~~n~-l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~~L~~L~l~~n~-~~~~~-~~~l~ 164 (480)
|++++++++. +++.. . -....++..++.+.+.+|.=. --+.+... ...+..+++..|. ++..- ...-.
T Consensus 218 L~~lNlSwc~qi~~~g--v--~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNG--V--QALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHHhhhccCchhhcCc--c--hHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 9999998874 33310 0 034566667777766664211 11222221 1235555554542 33211 11123
Q ss_pred CCCCCCEEEcccccc-cccCCcCc-CCCCCCCceeccccc-ccccCCccC-CCCCCCCEEEccCcccc--ccCCccCCCC
Q 011653 165 NLSNLLTLVLEGNKL-TGPIPTTF-GRLQKLQGLFLAFNK-LVGSCPDEL-CHLDRLDKLVLLGNKFS--GSIPSCLSNL 238 (480)
Q Consensus 165 ~l~~L~~L~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~l~~n~l~--~~~p~~l~~l 238 (480)
.+..||+|+.+++.. +...-.++ .++++|+.+.++.++ ++..-...+ .+++.|+.+++..+... +.+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 467788888876643 21111122 367888888888775 332211122 34677888888776542 2333334567
Q ss_pred CCCCEEEcCCccccccC-----CccccCCCCCCEEecCCCccCC-CCCccccccccCCeeecCCcccc--ccCCccccCC
Q 011653 239 TSLRFLYLGSNRFTSVI-----PSTFWRLKDILFLDFSSNLLVG-TLSFDIGNLKVLLGINLSENNLS--GDMPATIGGL 310 (480)
Q Consensus 239 ~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~ 310 (480)
+.|+.+.++++...... ...-..+..|..+.|+++.... ..-..+..+++|+.+++-+++-. ..+...-..+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88888888877543211 1222345677888888887543 33344567788888877776532 1222333456
Q ss_pred CCCcEEeC
Q 011653 311 KSLQIMDL 318 (480)
Q Consensus 311 ~~L~~L~l 318 (480)
+++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 66665544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=7e-05 Score=65.31 Aligned_cols=108 Identities=22% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCCCCcEEEcccCcceecCCcccccCCCCCEEeccCC--cccccCcccccCCCCCCEEeccCcccCCCCCcccccccccC
Q 011653 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGN--TFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLAN 116 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 116 (480)
.+..|+.+++.+..++.. ..+..+++|+.|.++.| .+++..+.....+++|++++++.|++.... . +..+..
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-t---l~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-T---LRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-c---cchhhh
Confidence 456666666666655521 23556677777777777 444444443445677778887777776431 1 145666
Q ss_pred CCCCCEEECcCCcccccC--chhHhhccccCcEEEeec
Q 011653 117 CKKLRSLNFIGNPLDGFL--PSSIGNLSKSLETLGIAN 152 (480)
Q Consensus 117 ~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~l~~ 152 (480)
+.+|..|++..|.-+... -..++.+.++|++|+-..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 677777888777655421 123444446777776543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=1.7e-05 Score=69.51 Aligned_cols=90 Identities=28% Similarity=0.210 Sum_probs=66.2
Q ss_pred CCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCC
Q 011653 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (480)
Q Consensus 40 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~ 119 (480)
+.+++.|++-+|.+++. ....+++.|++|.|+-|+++.. +.+..|++|++|+|..|.|..... +..+.++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldE----L~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDE----LEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHH----HHHHhcCch
Confidence 55677777777777632 2345678888888888888755 337788888889988888876521 267888999
Q ss_pred CCEEECcCCcccccCchh
Q 011653 120 LRSLNFIGNPLDGFLPSS 137 (480)
Q Consensus 120 L~~L~l~~n~l~~~~p~~ 137 (480)
|+.|+|..|...|.-+..
T Consensus 90 Lr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQN 107 (388)
T ss_pred hhhHhhccCCcccccchh
Confidence 999999998887765543
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.02 E-value=4.3e-05 Score=70.78 Aligned_cols=279 Identities=18% Similarity=0.095 Sum_probs=161.8
Q ss_pred hhcCccccceecccccc-cccCchhhhcCCCCCcEEEcccC-cceecCCc-ccccCCCCCEEeccCC-cccccC-ccccc
Q 011653 12 IFNMSTLKIIILINNSL-SGSLPSRIGLSLPTVEHLNLALN-RFSGTIPS-SITNASKLTLLELGGN-TFSGLI-PDTIG 86 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~-~~~ip~~~~~~l~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~-~~~~~ 86 (480)
-.+|+++++|.+.+|.. +...-..+...|++|+.|++..| .++...-. -...|++|++|+++.+ .+++.- -..+.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 34789999999988863 22333445557999999999885 45543333 3346899999999876 344421 12234
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCC-cccccCchhHhhccccCcEEEeecccC-cccCcccc-
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGN-PLDGFLPSSIGNLSKSLETLGIANCSI-SGNIPPAI- 163 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~L~~L~l~~n~~-~~~~~~~l- 163 (480)
++..++.+.+.+|.-.+... +...-..++.+..+++..| .++++--..+......||.|+.+++.. +...-..+
T Consensus 240 G~~~l~~~~~kGC~e~~le~---l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEA---LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred cchhhhhhhhcccccccHHH---HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 56667777666543222100 0011234455566665554 344333233444446788888887643 22222233
Q ss_pred cCCCCCCEEEcccccc-cccCCcCc-CCCCCCCceeccccccc--ccCCccCCCCCCCCEEEccCccccccC-----Ccc
Q 011653 164 SNLSNLLTLVLEGNKL-TGPIPTTF-GRLQKLQGLFLAFNKLV--GSCPDELCHLDRLDKLVLLGNKFSGSI-----PSC 234 (480)
Q Consensus 164 ~~l~~L~~L~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~-----p~~ 234 (480)
.++.+|+.|-+++++- +..--..+ .+++.|+.+++..+... +.+...-.+++.|+.+.++++...... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 4678899998888763 21111122 36788888888876542 223344456888999998877643111 122
Q ss_pred CCCCCCCCEEEcCCcccc-ccCCccccCCCCCCEEecCCCccCC--CCCccccccccCCeee
Q 011653 235 LSNLTSLRFLYLGSNRFT-SVIPSTFWRLKDILFLDFSSNLLVG--TLSFDIGNLKVLLGIN 293 (480)
Q Consensus 235 l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ 293 (480)
-..+..|..+.++++... ...-+.+..+++|+.+++-++.-.. .+...-..+++++...
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 245567888888888643 3344556678888888887765321 2222334555555443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00044 Score=60.47 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=18.0
Q ss_pred ccCCCCCCEEecCCC--ccCCCCCccccccccCCeeecCCccc
Q 011653 259 FWRLKDILFLDFSSN--LLVGTLSFDIGNLKVLLGINLSENNL 299 (480)
Q Consensus 259 ~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l 299 (480)
+..+++|+.|.++.| +..+.++.-...+++|+++++++|++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 334444455555544 33333333333344444455554444
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00015 Score=72.87 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=16.0
Q ss_pred CCCCCEEECcCCc-ccccCchhHhhccccCcEEEeecc
Q 011653 117 CKKLRSLNFIGNP-LDGFLPSSIGNLSKSLETLGIANC 153 (480)
Q Consensus 117 ~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~n 153 (480)
|++|+.|.+..+. ++..--..+....+.|++|+++.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4555555544443 333222233332244555555544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.41 E-value=0.0002 Score=72.02 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=27.4
Q ss_pred ccCcEEEeeccc-CcccCccccc-CCCCCCEEEccccc-ccccC-CcCcCCCCCCCceecccccc
Q 011653 143 KSLETLGIANCS-ISGNIPPAIS-NLSNLLTLVLEGNK-LTGPI-PTTFGRLQKLQGLFLAFNKL 203 (480)
Q Consensus 143 ~~L~~L~l~~n~-~~~~~~~~l~-~l~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~L~l~~n~~ 203 (480)
++|+.|+++.+. ++...-..+. .|++|++|.+.++. ++..- -.....+++|++|+++.+..
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 455556665554 3322222222 25566666555444 33211 11123455566666665543
No 71
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=96.30 E-value=0.0065 Score=57.71 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=16.2
Q ss_pred CccccCCCcceEEEEcCC
Q 011653 462 NIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~~ 479 (480)
.+||+|+||.||||.|.+
T Consensus 216 eli~~Grfg~V~KaqL~~ 233 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLDN 233 (534)
T ss_pred HHhhcCccceeehhhccC
Confidence 579999999999999865
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00017 Score=63.35 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=54.0
Q ss_pred CCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCch-hHhhccc
Q 011653 65 SKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPS-SIGNLSK 143 (480)
Q Consensus 65 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~ 143 (480)
.+.+.|+..++.++++ .....|+.|+.|.|+.|+++.. ..+..|++|+.|.|..|.+...-.- -+.++ +
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-------~pl~rCtrLkElYLRkN~I~sldEL~YLknl-p 88 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-------APLQRCTRLKELYLRKNCIESLDELEYLKNL-P 88 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-------hhHHHHHHHHHHHHHhcccccHHHHHHHhcC-c
Confidence 4567777777777654 3345677888888888888765 4577777777777777766522111 12333 4
Q ss_pred cCcEEEeecccCcccCc
Q 011653 144 SLETLGIANCSISGNIP 160 (480)
Q Consensus 144 ~L~~L~l~~n~~~~~~~ 160 (480)
+|+.|.|..|...|..+
T Consensus 89 sLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAG 105 (388)
T ss_pred hhhhHhhccCCcccccc
Confidence 56666666665544433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.27 E-value=0.0082 Score=31.11 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=5.5
Q ss_pred CCEEeccCCccc
Q 011653 67 LTLLELGGNTFS 78 (480)
Q Consensus 67 L~~L~l~~n~l~ 78 (480)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.0086 Score=31.04 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=9.1
Q ss_pred ccceecccccccccCchh
Q 011653 18 LKIIILINNSLSGSLPSR 35 (480)
Q Consensus 18 L~~L~l~~~~~~~~ip~~ 35 (480)
|++||+++|.++ .||++
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455555555555 55554
No 75
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.63 E-value=0.023 Score=57.56 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHhcccc---------CCccccCCCcceEEEEcC
Q 011653 444 RRFSYLELLQATDNFAE---------NNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 444 ~~~~~~~l~~aT~~F~~---------~~~iG~GgfG~VYkg~L~ 478 (480)
..++|+|=-+|...|.. +.+||.|-||.||+|.|+
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk 651 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLK 651 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceeccccc
Confidence 35788887777777754 579999999999999985
No 76
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=94.48 E-value=0.033 Score=56.90 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.6
Q ss_pred ccCCccccCCCcceEEEEc
Q 011653 459 AENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 459 ~~~~~iG~GgfG~VYkg~L 477 (480)
.++.+||+|+||+||||.+
T Consensus 699 kk~kvLGsgAfGtV~kGiw 717 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIW 717 (1177)
T ss_pred hhhceeccccceeEEeeeE
Confidence 4568999999999999985
No 77
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=93.92 E-value=0.024 Score=56.67 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.6
Q ss_pred HHhccccCCccccCCCcceEEEEc
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L 477 (480)
.+++|...++||+||||+||||.+
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEe
Confidence 467899999999999999999975
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.12 E-value=0.042 Score=26.36 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=5.5
Q ss_pred cccceeccccccc
Q 011653 17 TLKIIILINNSLS 29 (480)
Q Consensus 17 ~L~~L~l~~~~~~ 29 (480)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.03 E-value=0.00028 Score=69.42 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=17.4
Q ss_pred CCEEECcCCcccccCchhHh----hccccCcEEEeecccCc
Q 011653 120 LRSLNFIGNPLDGFLPSSIG----NLSKSLETLGIANCSIS 156 (480)
Q Consensus 120 L~~L~l~~n~l~~~~p~~~~----~~~~~L~~L~l~~n~~~ 156 (480)
+..+++..|.+.......+. .. ..|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCc
Confidence 55566666655544333222 22 34555555555554
No 80
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=92.34 E-value=0.07 Score=52.64 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred cccHHHHHHHHhccccCCccccCCCcceEEEEcCC
Q 011653 445 RFSYLELLQATDNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
.+.++|+.-+ ..||+|.||+||||...+
T Consensus 388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~whG 415 (678)
T KOG0193|consen 388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWHG 415 (678)
T ss_pred ccCHHHhhcc-------ceeccccccceeeccccc
Confidence 3566666544 679999999999998754
No 81
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=92.14 E-value=0.065 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred HHhccccCCccccCCCcceEEEEcCC
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
++++|...++||+|+||+||+|+..+
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~ 155 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVN 155 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcC
Confidence 56788889999999999999998753
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.67 E-value=0.0022 Score=63.22 Aligned_cols=187 Identities=21% Similarity=0.218 Sum_probs=120.2
Q ss_pred cccceecccccccccCchh----hhcCCCCCcEEEcccCcceecCCccc----ccC-CCCCEEeccCCccccc----Ccc
Q 011653 17 TLKIIILINNSLSGSLPSR----IGLSLPTVEHLNLALNRFSGTIPSSI----TNA-SKLTLLELGGNTFSGL----IPD 83 (480)
Q Consensus 17 ~L~~L~l~~~~~~~~ip~~----~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~ 83 (480)
.+..+++.+|.+...-... +. ..++|..|++++|.+.+.--..+ ... ..+++|++..|.+++. +.+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~-t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALK-TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhc-ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3778888888876433322 33 56788888999988864322222 222 4567788887777644 445
Q ss_pred cccCCCCCCEEeccCcccCCCCCccccccc----ccCCCCCCEEECcCCcccccCc----hhHhhccccCcEEEeecccC
Q 011653 84 TIGNLRNLAWLGLAYNNLTSSTSKLSFLSS----LANCKKLRSLNFIGNPLDGFLP----SSIGNLSKSLETLGIANCSI 155 (480)
Q Consensus 84 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~----l~~~~~L~~L~l~~n~l~~~~p----~~~~~~~~~L~~L~l~~n~~ 155 (480)
.+....+++.+++..|.+.... ....... +....++++|++..|.++...- ..+......+..+++..|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g-~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELG-LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHhcccchhHHHHHhcccchhh-hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 5666788888888888774320 0001122 3357788999999888763211 12222222366688888877
Q ss_pred ccc----CcccccCC-CCCCEEEcccccccccC----CcCcCCCCCCCceecccccccc
Q 011653 156 SGN----IPPAISNL-SNLLTLVLEGNKLTGPI----PTTFGRLQKLQGLFLAFNKLVG 205 (480)
Q Consensus 156 ~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~ 205 (480)
... ..+.+..+ ..+++++++.|.++..- ...+..++.++++.++.|.+..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 532 34455566 68899999999987543 3445678899999999998864
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.24 E-value=0.0045 Score=53.25 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=60.4
Q ss_pred cccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCC
Q 011653 258 TFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSL 337 (480)
Q Consensus 258 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L 337 (480)
.+......+.||++.|++... ...+..++.+..|+++.|.+. ..|..++....+..+++..|+++ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 334456667778777776522 234555667777777777776 66777777777777777777776 667777777777
Q ss_pred CEEEccCCccc
Q 011653 338 EVMNLSNNKIS 348 (480)
Q Consensus 338 ~~L~l~~n~l~ 348 (480)
+.+++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777777765
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.06 E-value=0.0062 Score=52.43 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=59.2
Q ss_pred cCchh-hhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCccc
Q 011653 31 SLPSR-IGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLS 109 (480)
Q Consensus 31 ~ip~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 109 (480)
+||-. +. ...+.+.||++.|.+- .+...+..++.|..|+++.|.+. ..|.++++...++.+++..|.++..|
T Consensus 32 ~~~v~ei~-~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p---- 104 (326)
T KOG0473|consen 32 EIPVREIA-SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQP---- 104 (326)
T ss_pred ccchhhhh-ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCC----
Confidence 45532 33 5667777777777664 34445556667777777777665 45666777777777777777666655
Q ss_pred ccccccCCCCCCEEECcCCccc
Q 011653 110 FLSSLANCKKLRSLNFIGNPLD 131 (480)
Q Consensus 110 ~~~~l~~~~~L~~L~l~~n~l~ 131 (480)
.+++..++++++++-++.+.
T Consensus 105 --~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 105 --KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred --ccccccCCcchhhhccCcch
Confidence 56666777777776666544
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.67 E-value=0.18 Score=27.15 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=13.8
Q ss_pred CccccceecccccccccCchhhh
Q 011653 15 MSTLKIIILINNSLSGSLPSRIG 37 (480)
Q Consensus 15 ~~~L~~L~l~~~~~~~~ip~~~~ 37 (480)
+++|++|++++|.+. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356666777777666 6666554
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.67 E-value=0.18 Score=27.15 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=13.8
Q ss_pred CccccceecccccccccCchhhh
Q 011653 15 MSTLKIIILINNSLSGSLPSRIG 37 (480)
Q Consensus 15 ~~~L~~L~l~~~~~~~~ip~~~~ 37 (480)
+++|++|++++|.+. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356666777777666 6666554
No 87
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.42 E-value=0.36 Score=46.03 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCccccCCCcceEEEEcCC
Q 011653 461 NNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~~ 479 (480)
...||+|.||.|+||.+.+
T Consensus 216 ~e~IGkGRyGEVwrG~wrG 234 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWRG 234 (513)
T ss_pred EEEecCccccceeeccccC
Confidence 4679999999999999865
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.98 E-value=0.21 Score=26.30 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.9
Q ss_pred CCCCEEECcCCcccccCc
Q 011653 118 KKLRSLNFIGNPLDGFLP 135 (480)
Q Consensus 118 ~~L~~L~l~~n~l~~~~p 135 (480)
++|++|++++|.+++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456666666666554433
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.20 E-value=0.043 Score=46.43 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCCCEEEcccc-cccccCCcCcCCCCCCCceecc
Q 011653 167 SNLLTLVLEGN-KLTGPIPTTFGRLQKLQGLFLA 199 (480)
Q Consensus 167 ~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~ 199 (480)
++|+.|++++| +||..--..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 44555555533 2332222334445555555444
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.78 E-value=0.64 Score=24.97 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=5.6
Q ss_pred CCCEEeccCCccc
Q 011653 66 KLTLLELGGNTFS 78 (480)
Q Consensus 66 ~L~~L~l~~n~l~ 78 (480)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.78 E-value=0.64 Score=24.97 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=5.6
Q ss_pred CCCEEeccCCccc
Q 011653 66 KLTLLELGGNTFS 78 (480)
Q Consensus 66 ~L~~L~l~~n~l~ 78 (480)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 92
>PTZ00284 protein kinase; Provisional
Probab=85.45 E-value=0.24 Score=49.53 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=24.4
Q ss_pred HHHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 449 LELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 449 ~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+++..+++.|...++||+|+||+||+|...
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~ 151 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDR 151 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEc
Confidence 445556778888899999999999999753
No 93
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=83.81 E-value=0.43 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.751 Sum_probs=20.1
Q ss_pred HHHhccccCCccccCCCcceEEEE
Q 011653 453 QATDNFAENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 453 ~aT~~F~~~~~iG~GgfG~VYkg~ 476 (480)
+..++|-+-.++|+||||.|||+.
T Consensus 476 RY~~DFEEL~lLGkGGFG~VvkVR 499 (1351)
T KOG1035|consen 476 RYLNDFEELELLGKGGFGSVVKVR 499 (1351)
T ss_pred hHhhhhHHHHHhcCCCCceEEEEe
Confidence 455667777899999999999986
No 94
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=83.22 E-value=0.36 Score=44.34 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.3
Q ss_pred hccccCCccccCCCcceEEEE
Q 011653 456 DNFAENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~ 476 (480)
++|..-|.|++|.||.||||.
T Consensus 76 ~efe~lnrI~EGtyGiVYRak 96 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAK 96 (419)
T ss_pred HHHHHHhhcccCcceeEEEec
Confidence 345555899999999999996
No 95
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=82.10 E-value=0.72 Score=45.33 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=15.7
Q ss_pred CccccCCCcceEEEEcC
Q 011653 462 NIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~ 478 (480)
.+||+|+||.||+|.|.
T Consensus 163 kkLGeGaFGeV~~G~l~ 179 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLK 179 (474)
T ss_pred ceeecccccEEEEEEEE
Confidence 68999999999999985
No 96
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=81.91 E-value=1.4 Score=44.95 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=24.0
Q ss_pred cHHHHHHHHhccccCCccccCCCcceEEEEcCC
Q 011653 447 SYLELLQATDNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 447 ~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
++......+..+...++||+|+||+||||...+
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~ 356 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLG 356 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEEeecC
Confidence 344434445556678999999999999988754
No 97
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.33 E-value=0.17 Score=42.98 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=18.5
Q ss_pred CCCcEEeCcCcc-ccccCCccccCCCCCCEEEccCC
Q 011653 311 KSLQIMDLAYNR-LEGQIPESFDDLTSLEVMNLSNN 345 (480)
Q Consensus 311 ~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n 345 (480)
++|+.|++++|. ++..--..+..+++|+.|.+.+-
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 456666666554 44443444555555555555443
No 98
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=78.97 E-value=1.1 Score=42.99 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=15.4
Q ss_pred CccccCCCcceEEEEcCC
Q 011653 462 NIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~~ 479 (480)
..+|+|+||+||||...+
T Consensus 47 ~~iG~G~~g~V~~~~~~g 64 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRG 64 (362)
T ss_pred hhcccCCceeEEEEEeCC
Confidence 449999999999999753
No 99
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=78.72 E-value=0.85 Score=44.06 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.1
Q ss_pred cHHHHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 447 SYLELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 447 ~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.+.++..+.++|.....||+|+||.||++.-.
T Consensus 34 ~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~ 65 (371)
T cd05622 34 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK 65 (371)
T ss_pred HHhhcCcchhhcEEEEEEeecCCeEEEEEEEC
Confidence 34556666788888899999999999999764
No 100
>PTZ00036 glycogen synthase kinase; Provisional
Probab=78.45 E-value=0.97 Score=44.85 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=19.8
Q ss_pred HhccccCCccccCCCcceEEEEcC
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+..|.-.++||+|+||+||+|+..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~ 88 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICI 88 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEEC
Confidence 345777789999999999999864
No 101
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=78.08 E-value=1.1 Score=43.26 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=16.5
Q ss_pred ccccCCccccCCCcceEEEE
Q 011653 457 NFAENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~ 476 (480)
+|.-.+.||+|+||.||+|+
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~ 58 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEAT 58 (374)
T ss_pred HceehheecCCCcccEEEEE
Confidence 34455889999999999987
No 102
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=77.66 E-value=0.96 Score=43.68 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=22.0
Q ss_pred HHHHHhccccCCccccCCCcceEEEEcC
Q 011653 451 LLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 451 l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+...+++|.-.++||+|+||.||++.-.
T Consensus 38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~ 65 (370)
T cd05621 38 LQMKAEDYDVVKVIGRGAFGEVQLVRHK 65 (370)
T ss_pred cCCCHHHCeEEEEEEecCCeEEEEEEEC
Confidence 3344566777789999999999999864
No 103
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=77.51 E-value=1.2 Score=47.92 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.7
Q ss_pred CCccccCCCcceEEEEcCC
Q 011653 461 NNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~~ 479 (480)
.+.||+|.||.||+|++.+
T Consensus 697 ~~~lG~G~FG~VY~g~~~~ 715 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSD 715 (1025)
T ss_pred eeeeccccccceEEEEEec
Confidence 4789999999999999854
No 104
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=76.74 E-value=0.79 Score=44.53 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=13.8
Q ss_pred CccccCCCcceEEEE
Q 011653 462 NIIGRGGFGPFMEQD 476 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~ 476 (480)
.+||+|.||.||||.
T Consensus 123 ~kIGeGTyg~VYkAr 137 (560)
T KOG0600|consen 123 EKIGEGTYGQVYKAR 137 (560)
T ss_pred HHhcCcchhheeEee
Confidence 679999999999986
No 105
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=76.03 E-value=1.4 Score=42.98 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=16.5
Q ss_pred ccCCccccCCCcceEEEEcC
Q 011653 459 AENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 459 ~~~~~iG~GgfG~VYkg~L~ 478 (480)
.-...||+|+||.||+|...
T Consensus 40 ~~~~~lG~G~fG~Vy~~~~~ 59 (401)
T cd05107 40 VLGRTLGSGAFGRVVEATAH 59 (401)
T ss_pred ehhhhccCCCceeEEEEEEc
Confidence 34478999999999999853
No 106
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=75.80 E-value=1.5 Score=42.92 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=15.3
Q ss_pred cCCccccCCCcceEEEEc
Q 011653 460 ENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 460 ~~~~iG~GgfG~VYkg~L 477 (480)
-.++||+|+||+||+|+.
T Consensus 41 ~~~~LG~G~fG~Vy~~~~ 58 (400)
T cd05105 41 LGRILGSGAFGKVVEGTA 58 (400)
T ss_pred hhheecCCCCceEEEEEE
Confidence 346899999999999974
No 107
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=74.82 E-value=0.92 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.9
Q ss_pred HHhccccCCccccCCCcceEEEEcC
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
..++|...++||+|+||+||+|.-.
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~ 65 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHK 65 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEEC
Confidence 4566777789999999999998764
No 108
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=73.70 E-value=1.9 Score=42.31 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred HHhccccCCccccCCCcceEEEEcC
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
..++|.--.+||+||||.||.+.=.
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk 163 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKK 163 (550)
T ss_pred CcccchhheeeccccceeEEEEEEc
Confidence 3467877889999999999998754
No 109
>PHA03210 serine/threonine kinase US3; Provisional
Probab=73.70 E-value=1.9 Score=43.66 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.3
Q ss_pred HhccccCCccccCCCcceEEEEc
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L 477 (480)
.+.|.-...||+|+||+||++..
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~ 169 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICAL 169 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEE
Confidence 45677778999999999999765
No 110
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=73.51 E-value=1.9 Score=41.58 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=20.5
Q ss_pred HHHHh-ccccCCccccCCCcceEEEEcC
Q 011653 452 LQATD-NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 452 ~~aT~-~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
...|. .|..-++||+||||.||-.+..
T Consensus 180 qpvt~n~F~~~RvlGkGGFGEV~acqvr 207 (591)
T KOG0986|consen 180 QPVTKNTFRVYRVLGKGGFGEVCACQVR 207 (591)
T ss_pred hhccccceeeeEEEecccccceeEEEEe
Confidence 44443 3888899999999999976543
No 111
>PHA03209 serine/threonine kinase US3; Provisional
Probab=72.37 E-value=2.2 Score=40.98 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHhccccCCccccCCCcceEEEEcC
Q 011653 453 QATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 453 ~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.+..+|.....||+|+||.||+|...
T Consensus 63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~ 88 (357)
T PHA03209 63 VASLGYTVIKTLTPGSEGRVFVATKP 88 (357)
T ss_pred hhhcCcEEEEEecCCCCeEEEEEEEC
Confidence 34457888899999999999999864
No 112
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.16 E-value=22 Score=34.70 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc--
Q 011653 65 SKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS-- 142 (480)
Q Consensus 65 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-- 142 (480)
+.+++++++.|.+....|-.+..= ---+.+..|.++..- +..+..=..--.+.+++++.|.....+|..+..+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p--~~pl~lr~c~lsskf--is~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP--GNPLSLRVCELSSKF--ISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred chhhhhccCCCcccccCCccccCC--CCccchhhhhhhhhH--HHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 356677777776666555443211 111444444443210 00000000012466677777777766665544322
Q ss_pred ccCcEEEeecccCcc---cCcccccCCCCCCEEEcccccc
Q 011653 143 KSLETLGIANCSISG---NIPPAISNLSNLLTLVLEGNKL 179 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~ 179 (480)
..++.++.+...+.- .-+-..+.-++|+..+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 235555555443321 1111223345666666665543
No 113
>PHA03211 serine/threonine kinase US3; Provisional
Probab=70.82 E-value=2.6 Score=42.05 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.8
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+|.-...||+|+||.||+|..+
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~ 191 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHP 191 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEEC
Confidence 4666788999999999999865
No 114
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=70.26 E-value=1.3 Score=41.96 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 450 ELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 450 ~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++...-+.|...++||+|.|++||+|++.
T Consensus 30 ~~p~~~~~~~~v~kigeGsFssv~~a~~~ 58 (418)
T KOG1167|consen 30 DIPFISNAYKVVNKIGEGSFSSVYKATDI 58 (418)
T ss_pred hhhhhhhhhhhhccccccchhhhhhhhHh
Confidence 33444555777899999999999999763
No 115
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.24 E-value=3.2 Score=22.39 Aligned_cols=16 Identities=50% Similarity=0.877 Sum_probs=9.4
Q ss_pred CCCEEEccCCcccccCc
Q 011653 336 SLEVMNLSNNKISGSIP 352 (480)
Q Consensus 336 ~L~~L~l~~n~l~~~~p 352 (480)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4566666666665 444
No 116
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=70.13 E-value=2.1 Score=42.97 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.6
Q ss_pred CCccccCCCcceEEEEcCC
Q 011653 461 NNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~~ 479 (480)
.++||.|-||.||+|++.+
T Consensus 394 ~r~iG~GqFGdVy~gvYt~ 412 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTD 412 (974)
T ss_pred HHhhcCCcccceeeeEecc
Confidence 4789999999999999753
No 117
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=69.40 E-value=2.5 Score=40.45 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.5
Q ss_pred CCccccCCCcceEEEEcC
Q 011653 461 NNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~ 478 (480)
.+.||+|+||+||+|...
T Consensus 79 ~~~lg~G~~g~V~~~~~~ 96 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHR 96 (353)
T ss_pred hhhccCCCCeEEEEEEEC
Confidence 367999999999999854
No 118
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=68.59 E-value=12 Score=35.58 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHhccccCCccccCCCcceEEEEcCC
Q 011653 450 ELLQATDNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 450 ~l~~aT~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
||...-.-|.-..++-+|.||.||+|.+.+
T Consensus 278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~e 307 (563)
T KOG1024|consen 278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWRE 307 (563)
T ss_pred hhhhhhhheechhhhhcCchhheeeeeecc
Confidence 333333446667788999999999997753
No 119
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=63.59 E-value=4.8 Score=28.48 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.1
Q ss_pred cccHHHHHHHHhccccC
Q 011653 445 RFSYLELLQATDNFAEN 461 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~~ 461 (480)
.++|+|-.+|-..|..+
T Consensus 56 P~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAKE 72 (75)
T ss_dssp GGGSSSHHHHHHHCSSB
T ss_pred cccccCHHHHHHHHHhh
Confidence 47899999999999754
No 120
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=61.54 E-value=4.8 Score=39.81 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.0
Q ss_pred hccccCCccccCCCcceEEEEcCCC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLKMG 480 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~~G 480 (480)
..|++ +-||.|++|.||||++.+|
T Consensus 118 ~~fd~-~plasaSigQVh~A~l~~G 141 (437)
T TIGR01982 118 AEFEE-KPLAAASIAQVHRARLVDG 141 (437)
T ss_pred hhCCC-cceeeeehhheEEEEecCC
Confidence 34553 6799999999999999887
No 121
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.30 E-value=6.9 Score=21.42 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=7.4
Q ss_pred CCcEEeCcCcccc
Q 011653 312 SLQIMDLAYNRLE 324 (480)
Q Consensus 312 ~L~~L~l~~n~l~ 324 (480)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666665554
No 122
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.41 E-value=8.1 Score=20.86 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=6.1
Q ss_pred CCcEEeCcCccc
Q 011653 312 SLQIMDLAYNRL 323 (480)
Q Consensus 312 ~L~~L~l~~n~l 323 (480)
+|+.|+++.|++
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 445555555544
No 123
>PHA03212 serine/threonine kinase US3; Provisional
Probab=59.23 E-value=4.4 Score=39.49 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=18.2
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.-...||+|+||.||++.-
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d 113 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACID 113 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEE
Confidence 3466678899999999999874
No 124
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=59.22 E-value=7.4 Score=36.45 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=21.7
Q ss_pred cccHHHHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 445 RFSYLELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.++..||++. ++||+|..|+|||+.-.
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk 101 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHK 101 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEc
Confidence 4677777654 78999999999998754
No 125
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.57 E-value=5 Score=40.75 Aligned_cols=24 Identities=38% Similarity=0.735 Sum_probs=20.1
Q ss_pred HhccccCCccccCCCcceEEEEcC
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.++|.-..++|+|.||+||.+.+.
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~k 390 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAELK 390 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEEc
Confidence 345666789999999999999875
No 126
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=57.74 E-value=6.1 Score=41.13 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.0
Q ss_pred cCCccccCCCcceEEEEcC
Q 011653 460 ENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 460 ~~~~iG~GgfG~VYkg~L~ 478 (480)
..+.+|+|+||+||.|.=.
T Consensus 998 ~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen 998 LGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred hhhhhccCccceEEEecCC
Confidence 4588999999999998743
No 127
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=57.47 E-value=5.2 Score=43.12 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.8
Q ss_pred hccccCCccccCCCcceEEEEcCC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
..|.-+..||+||||+||+|+=.+
T Consensus 698 ~~~~I~~e~G~g~y~~vy~a~~~~ 721 (974)
T KOG1166|consen 698 EKFCISKEIGEGSYGSVYVATHSN 721 (974)
T ss_pred eeEEEEeeeccccceEEEEeecCC
Confidence 446777899999999999998554
No 128
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=56.38 E-value=4.8 Score=32.52 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=6.7
Q ss_pred HhccccCCcccc
Q 011653 455 TDNFAENNIIGR 466 (480)
Q Consensus 455 T~~F~~~~~iG~ 466 (480)
+++|..+.-+|.
T Consensus 111 ~~~y~s~splg~ 122 (154)
T PF04478_consen 111 SDKYESNSPLGS 122 (154)
T ss_pred ccccccCCCCCC
Confidence 455655555654
No 129
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.61 E-value=4.3 Score=40.21 Aligned_cols=64 Identities=27% Similarity=0.268 Sum_probs=27.7
Q ss_pred cCCCCCEEeccCCcccccC--cccccCCCCCCEEeccCc--ccCCCCCcccccccccCCCCCCEEECcCCccc
Q 011653 63 NASKLTLLELGGNTFSGLI--PDTIGNLRNLAWLGLAYN--NLTSSTSKLSFLSSLANCKKLRSLNFIGNPLD 131 (480)
Q Consensus 63 ~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 131 (480)
+.+.+..++|++|++.... ...-...++|+.|+|++| .+...+.. +.++. ..|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el----~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL----DKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh----hhhcC-CCHHHeeecCCccc
Confidence 3444555555555543221 111113455666666665 33222100 11222 24666666666554
No 130
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.79 E-value=5.2 Score=41.65 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.8
Q ss_pred CccccCCCcceEEEEcCC
Q 011653 462 NIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~~ 479 (480)
..||+|.||+||+|+..+
T Consensus 492 ~eLGegaFGkVf~a~~~~ 509 (774)
T KOG1026|consen 492 EELGEGAFGKVFLAEAYG 509 (774)
T ss_pred hhhcCchhhhhhhhhccC
Confidence 569999999999998754
No 131
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=48.59 E-value=12 Score=22.56 Aligned_cols=6 Identities=17% Similarity=0.988 Sum_probs=2.2
Q ss_pred hHHHHH
Q 011653 401 IILPLS 406 (480)
Q Consensus 401 i~~~v~ 406 (480)
+++.++
T Consensus 17 VvVPV~ 22 (40)
T PF08693_consen 17 VVVPVG 22 (40)
T ss_pred EEechH
Confidence 333333
No 132
>PHA03207 serine/threonine kinase US3; Provisional
Probab=46.81 E-value=10 Score=36.88 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=17.7
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.|.-...||+|+||.||++.-.
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~ 114 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKH 114 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEc
Confidence 4555678999999999998653
No 133
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=46.77 E-value=2.8 Score=40.27 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=13.4
Q ss_pred CccccCCCcceEEEE
Q 011653 462 NIIGRGGFGPFMEQD 476 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~ 476 (480)
+++|+|||..||||.
T Consensus 469 hLLGrGGFSEVyKAF 483 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAF 483 (775)
T ss_pred HHhccccHHHHHHhc
Confidence 579999999999974
No 134
>PF15102 TMEM154: TMEM154 protein family
Probab=46.37 E-value=22 Score=28.61 Aligned_cols=8 Identities=25% Similarity=0.094 Sum_probs=3.9
Q ss_pred cccHHHHH
Q 011653 445 RFSYLELL 452 (480)
Q Consensus 445 ~~~~~~l~ 452 (480)
.+.++||.
T Consensus 124 eiEmeeld 131 (146)
T PF15102_consen 124 EIEMEELD 131 (146)
T ss_pred hhhHHHHH
Confidence 34455553
No 135
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.34 E-value=14 Score=19.62 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=7.3
Q ss_pred CCCCcEEeCcCcc
Q 011653 310 LKSLQIMDLAYNR 322 (480)
Q Consensus 310 ~~~L~~L~l~~n~ 322 (480)
|++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3455666666653
No 136
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=46.05 E-value=44 Score=20.15 Aligned_cols=10 Identities=20% Similarity=0.291 Sum_probs=4.1
Q ss_pred HHHHHHhhHh
Q 011653 413 ITLHLKSKLI 422 (480)
Q Consensus 413 ~~~~~~~~~~ 422 (480)
+..+.++||.
T Consensus 25 va~~iYRKw~ 34 (43)
T PF08114_consen 25 VALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHH
Confidence 3334444343
No 137
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=43.39 E-value=4.7 Score=36.12 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=17.7
Q ss_pred cccHHHHHHHHhccccCCccccCCCcceEEEE
Q 011653 445 RFSYLELLQATDNFAENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~ 476 (480)
.|+-++|++- -.||.|.||+|||-.
T Consensus 60 ~F~~~~Lqdl-------g~iG~G~fG~V~KM~ 84 (361)
T KOG1006|consen 60 TFTSDNLQDL-------GEIGNGAFGTVNKML 84 (361)
T ss_pred ccccchHHHH-------HHhcCCcchhhhhhh
Confidence 4555555433 459999999999854
No 138
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=40.14 E-value=23 Score=36.01 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.4
Q ss_pred hccccCCccccCCCcceEEEEcCC-C
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLKM-G 480 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~~-G 480 (480)
..|++ .-||+|++|.||+|++++ |
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G 144 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNG 144 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCC
Confidence 45776 679999999999999987 5
No 139
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=39.12 E-value=12 Score=36.99 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=15.7
Q ss_pred cccCCccccCCCcceEEEEc
Q 011653 458 FAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L 477 (480)
|. +.++|+|-||+||-|.-
T Consensus 567 f~-devLGSGQFG~VYgg~h 585 (888)
T KOG4236|consen 567 FA-DEVLGSGQFGTVYGGKH 585 (888)
T ss_pred hh-HhhccCCcceeeeccee
Confidence 55 46899999999998864
No 140
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=36.78 E-value=67 Score=32.80 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=10.6
Q ss_pred ceeeeehHHHHHHHHHHHHHHHHH
Q 011653 395 KILLIVIILPLSIALTIAITLHLK 418 (480)
Q Consensus 395 ~~~~~~i~~~v~~~~~~~~~~~~~ 418 (480)
...|+++++.+.++++++++++++
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~ 290 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILY 290 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHH
Confidence 334544444444444444444444
No 141
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.21 E-value=1.5e+02 Score=29.43 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccc---cCCCCCEEeccCCcccccCcccc
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSIT---NASKLTLLELGGNTFSGLIPDTI 85 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~ 85 (480)
+.+++++++-|....+.|..+.. ..--+++..|.++...-..+. .=..+.+++++.|...+.+|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~---p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ---PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred chhhhhccCCCcccccCCccccC---CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHH
Confidence 44678888888776555544331 111144444444311100000 01246777777776666666543
No 142
>PHA03281 envelope glycoprotein E; Provisional
Probab=33.92 E-value=82 Score=31.41 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=9.2
Q ss_pred ccccCCcccc--CCCc-ceEE
Q 011653 457 NFAENNIIGR--GGFG-PFME 474 (480)
Q Consensus 457 ~F~~~~~iG~--GgfG-~VYk 474 (480)
.|. |-||. ||.| +||-
T Consensus 619 ~~~--~~~~~~~~~~~~~~~~ 637 (642)
T PHA03281 619 EFG--NAIGAECGGSGYTVYI 637 (642)
T ss_pred hhc--cccccccCCcceEEEE
Confidence 354 55774 5555 6774
No 143
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=33.91 E-value=20 Score=35.19 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.8
Q ss_pred CccccCCCcceEEEEcCC
Q 011653 462 NIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~~ 479 (480)
+.||+|-||.||.|.+.+
T Consensus 212 ~~LG~G~FG~V~~g~~~~ 229 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNG 229 (468)
T ss_pred HHhcCCccceEEEEEEcC
Confidence 679999999999999853
No 144
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=33.14 E-value=21 Score=37.32 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.4
Q ss_pred CCccccCCCcceEEEEcCC
Q 011653 461 NNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~~ 479 (480)
+++|.+|||+.||.|....
T Consensus 42 ~~vLAEGGFa~VYla~~~~ 60 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVK 60 (738)
T ss_pred EEEEccCCcEEEEEEEecC
Confidence 4789999999999998754
No 145
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=32.17 E-value=20 Score=35.96 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=16.4
Q ss_pred cccCCccccCCCcceEEEEc
Q 011653 458 FAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L 477 (480)
|.-.++||+|+||.||+|.-
T Consensus 69 y~~~~~lg~G~~g~vy~a~~ 88 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATR 88 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEE
Confidence 44457899999999999864
No 146
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=32.10 E-value=20 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=13.4
Q ss_pred CccccCCCcceEEEE
Q 011653 462 NIIGRGGFGPFMEQD 476 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~ 476 (480)
.+||+|.|-+||||.
T Consensus 46 evLGrGafKtVYka~ 60 (632)
T KOG0584|consen 46 EVLGRGAFKTVYKAF 60 (632)
T ss_pred hhcccccceeeeecc
Confidence 359999999999995
No 147
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.05 E-value=21 Score=36.83 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=14.3
Q ss_pred cCCccccCCCcceEEEE
Q 011653 460 ENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 460 ~~~~iG~GgfG~VYkg~ 476 (480)
+.-++|+|.||+||-|.
T Consensus 579 ervVLGKGTYG~VYA~R 595 (1226)
T KOG4279|consen 579 ERVVLGKGTYGTVYAAR 595 (1226)
T ss_pred ceEEeecCceeEEEeec
Confidence 34579999999999886
No 148
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=31.49 E-value=26 Score=25.94 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=10.9
Q ss_pred ccC-CCcceEEEEcCCC
Q 011653 465 GRG-GFGPFMEQDLKMG 480 (480)
Q Consensus 465 G~G-gfG~VYkg~L~~G 480 (480)
|+| .-|+||| ++||
T Consensus 71 G~G~~~G~aYr--l~~G 85 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDG 85 (92)
T ss_pred CCCeECeEEEE--cCCc
Confidence 555 4799999 8877
No 149
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.14 E-value=33 Score=41.39 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=27.6
Q ss_pred eCcCccccccCCccccCCCCCCEEEccCCccc
Q 011653 317 DLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 317 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 348 (480)
||++|+|+..-+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999666677888999999999999886
No 150
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=29.12 E-value=22 Score=36.81 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=15.0
Q ss_pred CccccCCCcceEEEEcC
Q 011653 462 NIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~ 478 (480)
.+||+|.||+|.+|.+.
T Consensus 116 e~LG~GsFgvV~rg~Wt 132 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWT 132 (1039)
T ss_pred HHhcCcceeeEeecccc
Confidence 46999999999999874
No 151
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.62 E-value=32 Score=31.08 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.2
Q ss_pred cCCccccCCCcceEEEE
Q 011653 460 ENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 460 ~~~~iG~GgfG~VYkg~ 476 (480)
.++-||.|+||+||..+
T Consensus 57 PDRPIGYGAFGVVWsVT 73 (449)
T KOG0664|consen 57 PDRPIGYGAFGVVWSVT 73 (449)
T ss_pred CCCcccccceeEEEecc
Confidence 46889999999999654
No 152
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=27.55 E-value=32 Score=34.31 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.8
Q ss_pred cccCCccccCCCcceEEEEc
Q 011653 458 FAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L 477 (480)
|.=..+||+|+|.+||+|+=
T Consensus 75 F~Fg~~lGeGSYStV~~A~~ 94 (604)
T KOG0592|consen 75 FKFGKILGEGSYSTVVLARE 94 (604)
T ss_pred cchhheeccccceeEEEeee
Confidence 33346799999999999863
No 153
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=25.48 E-value=38 Score=35.29 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=15.3
Q ss_pred CccccCCCcceEEEEcC
Q 011653 462 NIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~ 478 (480)
+.+|+|.||.|+||.+.
T Consensus 302 ~~lg~g~fG~v~~~~~~ 318 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLF 318 (609)
T ss_pred ceeecccccceEeEEEe
Confidence 48999999999999874
No 154
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.77 E-value=35 Score=34.11 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=7.0
Q ss_pred CCCCCEEEccCccc
Q 011653 214 LDRLDKLVLLGNKF 227 (480)
Q Consensus 214 ~~~L~~L~l~~n~l 227 (480)
.+.+..++|++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 34445555555554
No 155
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=24.04 E-value=1.1e+02 Score=26.71 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=3.8
Q ss_pred EcCCccccc
Q 011653 245 YLGSNRFTS 253 (480)
Q Consensus 245 ~l~~n~~~~ 253 (480)
++++++++|
T Consensus 262 dLencnlsG 270 (302)
T KOG1665|consen 262 DLENCNLSG 270 (302)
T ss_pred ccccCCCCC
Confidence 344444443
No 156
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=23.51 E-value=42 Score=24.97 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=8.5
Q ss_pred ccCCCcceEE
Q 011653 465 GRGGFGPFME 474 (480)
Q Consensus 465 G~GgfG~VYk 474 (480)
=+||||..||
T Consensus 84 Prgg~GV~yr 93 (95)
T PRK15449 84 PRGTFGVEFR 93 (95)
T ss_pred CCCCcCEEEe
Confidence 4789999997
No 157
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=1.3e+02 Score=22.85 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=11.5
Q ss_pred CccccCC---CcceEEEEcCCC
Q 011653 462 NIIGRGG---FGPFMEQDLKMG 480 (480)
Q Consensus 462 ~~iG~Gg---fG~VYkg~L~~G 480 (480)
-.+|.|+ .|++|| +.||
T Consensus 88 ~~iggg~g~~lGt~yR--~adg 107 (121)
T COG4744 88 ARIGGGTGEALGTAYR--LADG 107 (121)
T ss_pred ccccCcccceeeeEEe--cCCC
Confidence 3466663 699999 6554
No 158
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=20.83 E-value=61 Score=22.28 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=12.0
Q ss_pred CccccCCCcceEEEEcC
Q 011653 462 NIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~ 478 (480)
.++-+=.+|.+|||.|.
T Consensus 20 ~V~vkLKwg~eYkG~Lv 36 (79)
T KOG3482|consen 20 PVLVKLKWGQEYKGTLV 36 (79)
T ss_pred eEEEEEecCcEEEEEEE
Confidence 34445568999999883
No 159
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=20.04 E-value=53 Score=33.60 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.0
Q ss_pred CCccccCCCcceEEEEcC
Q 011653 461 NNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~ 478 (480)
.+++|-|-||.||.|++.
T Consensus 272 khKLGGGQYGeVYeGvWK 289 (1157)
T KOG4278|consen 272 KHKLGGGQYGEVYEGVWK 289 (1157)
T ss_pred eeccCCCcccceeeeeee
Confidence 478999999999999874
Done!