Query 011653
Match_columns 480
No_of_seqs 434 out of 4224
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:35:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-53 7.9E-58 447.0 29.6 380 2-388 279-733 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.5E-51 2.9E-55 427.5 28.3 369 1-377 232-698 (768)
3 4eco_A Uncharacterized protein 100.0 4.5E-47 1.5E-51 390.4 26.0 367 1-378 90-584 (636)
4 4eco_A Uncharacterized protein 100.0 2.1E-46 7E-51 385.5 24.3 354 2-373 193-601 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 4.2E-45 1.4E-49 381.8 27.5 366 1-378 332-824 (876)
6 3t6q_A CD180 antigen; protein- 100.0 1.9E-43 6.4E-48 363.5 34.1 367 1-375 42-516 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.2E-43 7.5E-48 362.9 32.1 372 1-376 90-540 (606)
8 4ecn_A Leucine-rich repeat pro 100.0 2.1E-44 7.2E-49 376.6 24.8 354 2-374 435-842 (876)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-43 6.5E-48 363.4 30.6 368 1-377 41-538 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 1.9E-42 6.4E-47 353.6 29.0 368 1-377 37-536 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-42 1.1E-46 354.4 28.3 360 7-377 25-515 (606)
12 3v47_A TOLL-like receptor 5B a 100.0 1.3E-42 4.3E-47 344.8 23.5 357 16-378 30-414 (455)
13 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-41 1.8E-45 349.8 34.8 367 1-373 34-518 (680)
14 3j0a_A TOLL-like receptor 5; m 100.0 6.8E-42 2.3E-46 363.4 27.6 369 1-376 33-543 (844)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-41 4.1E-46 343.4 27.9 353 2-377 10-461 (520)
16 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-40 4.1E-45 347.1 34.8 370 2-377 232-627 (680)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-41 9.4E-46 358.7 29.0 370 2-377 58-565 (844)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-40 5.2E-45 338.1 28.8 134 236-372 350-486 (562)
19 3v47_A TOLL-like receptor 5B a 100.0 3.5E-41 1.2E-45 334.4 23.2 348 1-352 39-412 (455)
20 2z81_A CD282 antigen, TOLL-lik 100.0 2E-41 6.7E-46 344.3 21.1 173 193-376 312-490 (549)
21 2z63_A TOLL-like receptor 4, v 100.0 2.3E-40 7.8E-45 338.1 26.9 356 7-374 21-509 (570)
22 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-40 2.1E-44 330.9 27.0 337 19-377 3-438 (520)
23 2id5_A Lingo-1, leucine rich r 100.0 2.7E-39 9.2E-44 322.6 25.9 322 19-350 14-335 (477)
24 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-39 3.8E-44 331.4 22.1 353 7-377 19-468 (549)
25 2id5_A Lingo-1, leucine rich r 100.0 1.8E-38 6E-43 316.7 26.0 326 43-377 13-338 (477)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-38 9.9E-43 321.4 28.0 355 2-377 41-515 (562)
27 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-37 3.8E-42 322.4 32.2 371 1-376 61-584 (635)
28 1o6v_A Internalin A; bacterial 100.0 1E-37 3.5E-42 309.8 29.6 326 12-373 64-389 (466)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-37 4.2E-42 306.9 28.8 336 4-378 30-393 (457)
30 1jl5_A Outer protein YOPM; leu 100.0 4.4E-37 1.5E-41 302.7 25.1 325 1-377 20-377 (454)
31 1o6v_A Internalin A; bacterial 100.0 1.5E-36 5.1E-41 301.4 28.7 328 13-376 43-370 (466)
32 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-35 1E-39 304.1 32.8 362 7-377 45-560 (635)
33 4fmz_A Internalin; leucine ric 100.0 1.5E-35 5.3E-40 283.0 26.7 305 39-372 42-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 2E-35 6.8E-40 282.3 26.5 308 11-348 39-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 1.2E-35 4E-40 288.4 24.1 311 39-374 43-354 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 3.4E-35 1.2E-39 285.1 26.5 312 14-350 43-354 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 4.9E-35 1.7E-39 288.3 26.8 320 17-373 19-353 (457)
38 3oja_B Anopheles plasmodium-re 100.0 1.9E-35 6.5E-40 302.2 24.1 313 39-375 49-361 (597)
39 3oja_B Anopheles plasmodium-re 100.0 4.7E-35 1.6E-39 299.3 26.4 313 14-351 49-361 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-36 2.6E-40 280.2 17.2 252 118-373 50-305 (313)
41 1jl5_A Outer protein YOPM; leu 100.0 1E-34 3.4E-39 285.9 22.9 321 10-377 5-354 (454)
42 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-35 1.6E-39 274.7 17.0 251 41-301 50-306 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.2E-34 3.2E-38 268.8 25.7 287 42-345 34-330 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-33 3.9E-38 268.2 25.1 298 7-322 18-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 3.3E-33 1.1E-37 264.8 27.1 289 42-346 32-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 1E-32 3.6E-37 261.4 26.5 288 66-369 32-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-36 4.9E-41 301.8 -4.8 358 16-374 3-413 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2E-35 7E-40 293.5 -2.7 369 2-373 13-441 (461)
49 4fcg_A Uncharacterized protein 100.0 3.1E-30 1.1E-34 243.4 20.0 225 143-372 81-314 (328)
50 2z66_A Variable lymphocyte rec 100.0 4.1E-30 1.4E-34 240.9 20.2 247 68-324 10-261 (306)
51 2z66_A Variable lymphocyte rec 100.0 1.8E-30 6.1E-35 243.3 17.7 249 19-278 10-263 (306)
52 4fcg_A Uncharacterized protein 100.0 4.7E-30 1.6E-34 242.1 19.3 234 40-299 80-313 (328)
53 2z80_A TOLL-like receptor 2, v 100.0 1.2E-30 4.1E-35 249.6 13.8 280 13-328 28-318 (353)
54 2z80_A TOLL-like receptor 2, v 100.0 2.2E-30 7.4E-35 247.7 14.6 286 60-376 26-318 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 8E-29 2.7E-33 244.9 24.5 247 91-348 56-303 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 1.7E-28 5.9E-33 241.6 24.0 247 91-348 45-292 (440)
57 1ozn_A Reticulon 4 receptor; N 100.0 5E-29 1.7E-33 230.9 17.4 252 121-377 14-266 (285)
58 1wwl_A Monocyte differentiatio 100.0 1.5E-30 5E-35 244.3 6.9 247 116-373 41-310 (312)
59 1wwl_A Monocyte differentiatio 100.0 2.3E-30 7.9E-35 242.9 7.7 246 40-301 42-310 (312)
60 1ozn_A Reticulon 4 receptor; N 100.0 4.3E-28 1.5E-32 224.6 22.3 228 146-376 14-242 (285)
61 3zyj_A Leucine-rich repeat-con 100.0 5.8E-28 2E-32 237.9 24.2 246 18-275 45-291 (440)
62 3zyi_A Leucine-rich repeat-con 100.0 7.4E-28 2.5E-32 237.9 24.9 245 68-323 57-302 (452)
63 3o53_A Protein LRIM1, AGAP0063 100.0 1.7E-29 5.9E-34 237.5 7.3 258 17-319 11-270 (317)
64 3ogk_B Coronatine-insensitive 100.0 2.8E-31 9.7E-36 272.1 -5.6 357 14-374 110-528 (592)
65 3g06_A SSPH2 (leucine-rich rep 100.0 2.7E-27 9.1E-32 239.9 23.3 266 16-356 40-305 (622)
66 3g06_A SSPH2 (leucine-rich rep 100.0 8.7E-27 3E-31 236.2 26.1 262 42-377 41-302 (622)
67 3o53_A Protein LRIM1, AGAP0063 100.0 1.5E-29 5.1E-34 237.9 4.8 267 43-353 12-281 (317)
68 3oja_A Leucine-rich immune mol 99.9 1.6E-28 5.6E-33 244.0 8.6 236 117-367 33-270 (487)
69 3ogk_B Coronatine-insensitive 99.9 5.2E-30 1.8E-34 262.7 -3.3 366 4-373 61-477 (592)
70 3oja_A Leucine-rich immune mol 99.9 1.9E-27 6.4E-32 236.3 11.8 235 41-295 34-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 4.9E-26 1.7E-30 209.8 19.4 212 143-376 28-241 (276)
72 2z62_A TOLL-like receptor 4, v 99.9 1.9E-25 6.4E-30 205.8 20.8 224 93-350 11-239 (276)
73 2p1m_B Transport inhibitor res 99.9 1.2E-28 4.2E-33 252.6 -3.7 351 14-371 103-493 (594)
74 3rfs_A Internalin B, repeat mo 99.9 1.6E-25 5.5E-30 205.6 16.0 207 86-309 38-244 (272)
75 2o6q_A Variable lymphocyte rec 99.9 2E-24 6.9E-29 198.1 22.8 206 144-376 17-222 (270)
76 3rfs_A Internalin B, repeat mo 99.9 5.5E-26 1.9E-30 208.7 12.0 205 144-359 42-246 (272)
77 2o6q_A Variable lymphocyte rec 99.9 2.7E-24 9.1E-29 197.3 22.0 202 118-323 16-217 (270)
78 1p9a_G Platelet glycoprotein I 99.9 3.8E-24 1.3E-28 198.0 20.5 206 163-375 6-211 (290)
79 2p1m_B Transport inhibitor res 99.9 3.9E-27 1.3E-31 241.5 -1.7 358 11-374 61-471 (594)
80 1p9a_G Platelet glycoprotein I 99.9 1.2E-23 4.2E-28 194.5 19.6 201 114-322 6-206 (290)
81 4glp_A Monocyte differentiatio 99.9 7E-24 2.4E-28 198.6 18.0 202 167-373 91-308 (310)
82 3goz_A Leucine-rich repeat-con 99.9 8.8E-26 3E-30 216.3 3.9 255 22-278 4-299 (362)
83 2ca6_A RAN GTPase-activating p 99.9 6.5E-26 2.2E-30 219.4 2.3 245 31-277 23-317 (386)
84 2ca6_A RAN GTPase-activating p 99.9 2.5E-26 8.7E-31 222.3 -1.4 242 112-374 26-318 (386)
85 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.8E-28 197.3 15.0 226 118-349 64-308 (310)
86 2ast_B S-phase kinase-associat 99.9 1.5E-25 5.1E-30 212.8 2.1 126 43-177 49-178 (336)
87 3goz_A Leucine-rich repeat-con 99.9 2E-25 6.8E-30 213.8 2.1 250 124-374 4-299 (362)
88 2ast_B S-phase kinase-associat 99.9 5.6E-25 1.9E-29 208.8 4.9 255 66-333 48-315 (336)
89 2xwt_C Thyrotropin receptor; s 99.9 4.2E-23 1.4E-27 185.8 15.5 178 144-324 32-218 (239)
90 2xwt_C Thyrotropin receptor; s 99.9 4.7E-23 1.6E-27 185.4 15.0 204 158-370 25-237 (239)
91 1h6u_A Internalin H; cell adhe 99.9 3.8E-23 1.3E-27 193.2 12.8 213 16-253 19-231 (308)
92 3m19_A Variable lymphocyte rec 99.9 5E-22 1.7E-26 180.0 19.8 180 168-374 15-194 (251)
93 3m19_A Variable lymphocyte rec 99.9 4E-22 1.4E-26 180.7 19.0 181 143-326 14-194 (251)
94 1h6u_A Internalin H; cell adhe 99.9 2.5E-22 8.4E-27 187.6 16.6 196 11-229 36-231 (308)
95 2o6s_A Variable lymphocyte rec 99.9 1.8E-21 6.2E-26 171.1 15.0 158 168-332 29-186 (208)
96 2o6s_A Variable lymphocyte rec 99.9 5.5E-21 1.9E-25 168.0 14.9 181 121-312 10-190 (208)
97 3cvr_A Invasion plasmid antige 99.9 5.6E-21 1.9E-25 191.3 16.5 185 119-332 60-251 (571)
98 4ay9_X Follicle-stimulating ho 99.8 2.1E-20 7.3E-25 177.9 18.0 239 121-369 12-256 (350)
99 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.5E-25 179.4 15.8 81 148-228 85-167 (350)
100 3cvr_A Invasion plasmid antige 99.8 2.3E-20 7.8E-25 186.9 18.1 188 144-359 60-254 (571)
101 1m9s_A Internalin B; cell inva 99.8 2.8E-20 9.6E-25 188.3 14.6 193 15-230 20-212 (605)
102 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.9E-24 183.2 17.3 177 12-209 39-215 (605)
103 1h6t_A Internalin B; cell adhe 99.8 3.2E-20 1.1E-24 171.7 11.5 190 16-228 24-213 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-19 1.1E-23 157.9 15.1 135 241-375 34-169 (220)
105 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5.2E-24 167.1 13.5 173 12-205 42-214 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 4.9E-19 1.7E-23 156.6 15.6 153 219-374 15-167 (220)
107 2xot_A Amphoterin-induced prot 99.8 4.3E-19 1.5E-23 169.5 14.2 176 170-348 21-202 (361)
108 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.3E-23 154.5 16.7 154 219-376 23-176 (229)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4E-23 154.2 15.5 135 217-351 34-169 (220)
110 2v9t_B SLIT homolog 2 protein 99.8 1.7E-18 5.9E-23 153.1 15.9 65 284-348 101-165 (220)
111 1dce_A Protein (RAB geranylger 99.8 2E-21 7E-26 195.5 -4.2 218 114-366 345-567 (567)
112 2xot_A Amphoterin-induced prot 99.8 7.5E-19 2.6E-23 167.9 13.4 177 145-324 20-202 (361)
113 3e6j_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 151.1 16.5 136 215-351 40-175 (229)
114 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.7E-23 158.8 11.2 170 14-205 17-186 (263)
115 4ezg_A Putative uncharacterize 99.8 1.6E-18 5.3E-23 150.8 11.6 153 164-323 41-193 (197)
116 1dce_A Protein (RAB geranylger 99.8 1.4E-20 4.9E-25 189.3 -3.0 122 119-246 442-567 (567)
117 4ezg_A Putative uncharacterize 99.8 6.2E-18 2.1E-22 147.0 13.3 151 143-300 44-194 (197)
118 1xeu_A Internalin C; cellular 99.7 8.1E-18 2.8E-22 153.1 11.5 152 11-182 36-187 (263)
119 3sb4_A Hypothetical leucine ri 99.7 2.1E-18 7.3E-23 162.7 6.6 100 263-364 226-326 (329)
120 4b8c_D Glucose-repressible alc 99.7 1.1E-18 3.9E-23 181.0 5.0 181 158-348 215-404 (727)
121 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6.2E-22 156.3 12.5 102 190-293 225-327 (329)
122 4b8c_D Glucose-repressible alc 99.7 3.4E-18 1.2E-22 177.5 7.3 181 8-204 216-404 (727)
123 1w8a_A SLIT protein; signaling 99.7 9.9E-17 3.4E-21 138.6 13.6 111 264-374 30-141 (192)
124 1w8a_A SLIT protein; signaling 99.7 2.2E-16 7.4E-21 136.4 14.0 132 218-352 11-143 (192)
125 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.4E-21 134.3 10.9 132 215-348 24-160 (168)
126 4fs7_A Uncharacterized protein 99.7 5.4E-15 1.9E-19 142.9 22.2 315 31-368 61-375 (394)
127 4fdw_A Leucine rich hypothetic 99.7 8.3E-15 2.8E-19 141.0 22.6 267 63-348 111-383 (401)
128 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.1E-21 131.6 9.0 125 216-342 18-147 (149)
129 2ell_A Acidic leucine-rich nuc 99.7 2.1E-16 7E-21 133.6 10.1 83 167-251 24-107 (168)
130 4fdw_A Leucine rich hypothetic 99.7 7.6E-15 2.6E-19 141.3 21.2 266 15-300 112-383 (401)
131 2je0_A Acidic leucine-rich nuc 99.7 2.2E-16 7.6E-21 130.5 9.0 130 237-368 15-149 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 2.7E-15 9.4E-20 129.4 14.1 111 264-375 32-142 (193)
133 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 127.3 13.4 111 264-374 29-139 (177)
134 2o6r_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 125.8 13.9 132 218-352 10-141 (177)
135 2wfh_A SLIT homolog 2 protein 99.6 5.9E-15 2E-19 127.3 14.0 128 218-349 13-140 (193)
136 4fs7_A Uncharacterized protein 99.6 1.7E-13 5.9E-18 132.4 23.3 328 11-364 66-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.6 8E-17 2.7E-21 140.0 -2.3 127 60-197 43-180 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.6 5.7E-15 1.9E-19 125.7 9.3 133 12-154 15-151 (176)
139 1ds9_A Outer arm dynein; leuci 99.6 8.3E-17 2.8E-21 139.9 -2.6 155 12-180 14-185 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.8E-19 123.8 8.8 132 236-372 16-153 (176)
141 4gt6_A Cell surface protein; l 99.5 8.2E-12 2.8E-16 120.5 22.9 321 31-371 53-390 (394)
142 3g39_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 113.5 11.7 88 287-374 30-117 (170)
143 4gt6_A Cell surface protein; l 99.4 2.6E-11 8.7E-16 117.1 24.4 295 59-370 57-368 (394)
144 3g39_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 111.4 11.9 107 241-350 11-117 (170)
145 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 3.9E-17 110.8 11.6 88 287-374 33-120 (174)
146 2r9u_A Variable lymphocyte rec 99.4 2E-12 7E-17 109.3 11.2 103 146-251 15-117 (174)
147 3un9_A NLR family member X1; l 99.3 1.4E-13 4.7E-18 131.2 -3.9 86 287-372 155-252 (372)
148 4h09_A Hypothetical leucine ri 99.2 2.4E-09 8.1E-14 102.7 24.6 301 39-359 44-356 (379)
149 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 114.2 10.9 105 242-349 11-117 (347)
150 2ifg_A High affinity nerve gro 99.2 3.9E-11 1.3E-15 113.8 11.3 111 14-134 7-119 (347)
151 3un9_A NLR family member X1; l 99.2 2.3E-13 8E-18 129.6 -4.1 142 118-279 101-255 (372)
152 4h09_A Hypothetical leucine ri 99.2 7.3E-09 2.5E-13 99.3 25.1 129 234-366 212-340 (379)
153 2ra8_A Uncharacterized protein 99.1 1.2E-10 4.1E-15 110.0 5.8 166 11-180 134-320 (362)
154 2ra8_A Uncharacterized protein 99.0 1.2E-10 3.9E-15 110.1 2.2 83 286-370 251-341 (362)
155 3rw6_A Nuclear RNA export fact 98.5 1E-08 3.4E-13 91.8 -0.3 69 62-135 167-237 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 2.9E-08 9.8E-13 84.5 1.9 89 284-372 62-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.5 2.7E-08 9.3E-13 84.6 1.0 113 236-348 33-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 2.5E-07 8.5E-12 82.7 4.0 118 5-125 129-258 (267)
159 3e4g_A ATP synthase subunit S, 98.1 7.3E-07 2.5E-11 73.8 0.8 34 312-345 115-149 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 72.7 1.9 84 287-370 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 7.4E-05 2.5E-09 63.0 2.0 109 262-370 40-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 9.8E-05 3.4E-09 62.3 1.4 110 238-347 40-169 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0036 1.2E-07 49.1 6.7 58 315-374 12-70 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0051 1.7E-07 48.2 6.4 56 291-348 12-68 (130)
165 2qkw_B Protein kinase; three-h 94.9 0.0028 9.5E-08 58.6 -1.4 36 445-480 28-63 (321)
166 3omv_A RAF proto-oncogene seri 93.6 0.022 7.7E-07 51.9 1.6 19 461-479 41-59 (307)
167 4aw2_A Serine/threonine-protei 93.4 0.011 3.9E-07 57.0 -0.7 34 446-479 64-97 (437)
168 4aoj_A High affinity nerve gro 93.0 0.025 8.5E-07 52.3 0.9 21 458-478 43-63 (329)
169 3p1a_A MYT1 kinase, membrane-a 92.0 0.0094 3.2E-07 54.7 -3.3 23 456-478 57-79 (311)
170 3kul_A Ephrin type-A receptor 89.9 0.11 3.6E-06 47.9 1.7 34 445-478 29-71 (325)
171 4ase_A Vascular endothelial gr 89.7 0.076 2.6E-06 49.5 0.6 21 457-477 65-85 (353)
172 2vd5_A DMPK protein; serine/th 87.9 0.099 3.4E-06 50.0 0.0 34 445-478 50-83 (412)
173 3dzo_A Rhoptry kinase domain; 87.9 0.1 3.5E-06 49.9 0.1 25 453-477 75-99 (413)
174 4g3f_A NF-kappa-beta-inducing 87.8 0.11 3.7E-06 48.0 0.2 23 455-477 57-79 (336)
175 3v8s_A RHO-associated protein 87.2 0.13 4.3E-06 49.2 0.3 32 447-478 60-91 (410)
176 4fih_A Serine/threonine-protei 86.7 0.18 6.1E-06 46.7 0.9 21 458-478 76-96 (346)
177 4b99_A Mitogen-activated prote 84.8 0.23 7.9E-06 47.1 0.8 20 458-477 56-75 (398)
178 4fie_A Serine/threonine-protei 84.3 0.27 9.1E-06 46.9 0.9 22 457-478 152-173 (423)
179 2qol_A Ephrin receptor; recept 84.0 0.29 1E-05 45.9 1.1 23 456-478 45-67 (373)
180 3l9p_A Anaplastic lymphoma kin 82.7 0.39 1.3E-05 44.9 1.4 23 456-478 71-93 (367)
181 3v5w_A G-protein coupled recep 82.5 0.32 1.1E-05 49.2 0.7 23 456-478 189-211 (689)
182 3lb7_A RAF proto-oncogene seri 82.5 0.42 1.4E-05 43.4 1.4 21 458-478 38-58 (307)
183 1qcf_A Haematopoetic cell kina 81.5 0.42 1.5E-05 46.2 1.2 25 455-479 187-211 (454)
184 2w4o_A Calcium/calmodulin-depe 81.0 0.45 1.5E-05 44.1 1.1 25 454-478 51-75 (349)
185 3e7e_A HBUB1, BUB1A, mitotic c 80.9 0.36 1.2E-05 45.1 0.4 23 454-476 63-85 (365)
186 3p86_A Serine/threonine-protei 80.8 0.44 1.5E-05 43.3 0.9 23 456-478 37-59 (309)
187 2y7j_A Phosphorylase B kinase 80.2 0.68 2.3E-05 43.2 2.1 30 449-478 87-116 (365)
188 2zmd_A Dual specificity protei 79.9 0.46 1.6E-05 44.9 0.8 22 458-479 58-79 (390)
189 4dc2_A Protein kinase C IOTA t 79.8 0.52 1.8E-05 44.7 1.1 23 456-478 52-74 (396)
190 1mqb_A Ephrin type-A receptor 79.7 0.47 1.6E-05 43.6 0.8 21 458-478 46-66 (333)
191 2psq_A Fibroblast growth facto 79.1 0.55 1.9E-05 43.9 1.0 22 456-477 81-102 (370)
192 3c1x_A Hepatocyte growth facto 79.1 0.44 1.5E-05 44.7 0.3 17 461-477 94-110 (373)
193 2c30_A Serine/threonine-protei 78.4 0.53 1.8E-05 43.0 0.7 21 458-478 47-67 (321)
194 1fmk_A C-SRC, P60-SRC, tyrosin 78.4 0.65 2.2E-05 44.9 1.3 24 456-479 184-207 (452)
195 1zth_A RIO1 serine protein kin 78.3 0.61 2.1E-05 41.1 1.0 36 445-480 33-72 (258)
196 1zar_A RIO2 kinase; serine kin 77.8 0.77 2.6E-05 41.1 1.5 23 458-480 92-114 (282)
197 4e7w_A Glycogen synthase kinas 77.8 0.52 1.8E-05 44.6 0.4 22 458-479 42-63 (394)
198 1vzo_A Ribosomal protein S6 ki 77.7 0.58 2E-05 43.5 0.7 22 456-477 54-75 (355)
199 1u5q_A Serine/threonine protei 77.7 0.56 1.9E-05 43.5 0.6 23 455-477 53-75 (348)
200 3i6u_A CDS1, serine/threonine- 77.3 0.88 3E-05 43.4 1.9 25 454-478 133-157 (419)
201 1j1b_A Glycogen synthase kinas 77.1 0.6 2.1E-05 44.6 0.7 21 458-478 56-76 (420)
202 2i1m_A Macrophage colony-stimu 77.0 0.6 2.1E-05 42.8 0.6 23 455-477 45-67 (333)
203 1luf_A Muscle-specific tyrosin 77.0 0.7 2.4E-05 42.5 1.1 25 454-478 45-69 (343)
204 2r5t_A Serine/threonine-protei 76.9 0.8 2.7E-05 42.9 1.4 23 456-478 38-60 (373)
205 2vx3_A Dual specificity tyrosi 76.5 0.63 2.1E-05 43.7 0.6 26 453-478 51-76 (382)
206 3mdy_A Bone morphogenetic prot 75.8 0.86 3E-05 41.7 1.3 26 453-478 34-59 (337)
207 3cbl_A C-FES, proto-oncogene t 75.6 0.75 2.6E-05 43.2 0.8 22 457-478 115-136 (377)
208 3a99_A Proto-oncogene serine/t 75.6 0.79 2.7E-05 41.8 1.0 22 456-477 43-64 (320)
209 3an0_A Dual specificity mitoge 75.4 0.68 2.3E-05 42.6 0.5 22 456-477 51-72 (340)
210 3tt0_A Basic fibroblast growth 74.8 0.76 2.6E-05 43.2 0.7 22 456-477 69-90 (382)
211 1rjb_A FL cytokine receptor; k 74.6 0.78 2.7E-05 42.2 0.7 23 455-477 44-66 (344)
212 3nsz_A CK II alpha, casein kin 74.6 0.78 2.7E-05 41.9 0.7 22 456-477 36-57 (330)
213 2h8h_A Proto-oncogene tyrosine 74.5 0.88 3E-05 45.0 1.1 24 456-479 267-290 (535)
214 2v62_A Serine/threonine-protei 73.7 0.78 2.7E-05 42.4 0.4 22 457-478 38-59 (345)
215 3rp9_A Mitogen-activated prote 73.6 1 3.6E-05 43.4 1.4 22 456-477 53-74 (458)
216 1opk_A P150, C-ABL, proto-onco 73.6 0.89 3E-05 44.5 0.8 23 456-478 220-242 (495)
217 2x4f_A Myosin light chain kina 73.4 0.9 3.1E-05 42.6 0.8 20 459-478 92-111 (373)
218 1k9a_A Carboxyl-terminal SRC k 73.2 0.95 3.3E-05 43.6 0.9 23 456-478 193-215 (450)
219 1rdq_E PKA C-alpha, CAMP-depen 72.9 0.98 3.3E-05 41.9 0.9 23 456-478 41-63 (350)
220 3kvw_A DYRK2, dual specificity 72.9 0.89 3E-05 43.5 0.6 22 457-478 98-119 (429)
221 3c4z_A Rhodopsin kinase; Ser/T 72.9 1.1 3.6E-05 44.5 1.2 23 456-478 185-207 (543)
222 4ejn_A RAC-alpha serine/threon 72.5 0.87 3E-05 43.8 0.5 23 455-477 147-169 (446)
223 3q60_A ROP5B; pseudokinase, tr 72.1 0.89 3E-05 42.5 0.4 22 457-478 63-84 (371)
224 4exu_A Mitogen-activated prote 71.9 0.97 3.3E-05 42.2 0.6 22 456-477 42-63 (371)
225 3byv_A Rhoptry kinase; malaria 71.7 0.81 2.8E-05 42.9 0.0 23 456-478 73-95 (377)
226 4fl3_A Tyrosine-protein kinase 71.7 0.98 3.4E-05 45.8 0.6 16 462-477 375-390 (635)
227 2owb_A Serine/threonine-protei 71.7 0.92 3.1E-05 41.7 0.4 23 456-478 41-63 (335)
228 3uto_A Twitchin; kinase, muscl 71.6 0.94 3.2E-05 45.2 0.5 22 456-477 157-178 (573)
229 1b6c_B TGF-B superfamily recep 71.1 1.9 6.6E-05 39.4 2.5 26 453-478 39-64 (342)
230 2acx_A G protein-coupled recep 70.7 1.1 3.7E-05 44.6 0.7 24 455-478 183-206 (576)
231 3pfq_A PKC-B, PKC-beta, protei 70.6 1.3 4.5E-05 45.2 1.3 24 455-478 340-363 (674)
232 1kob_A Twitchin; kinase, intra 70.5 1.2 4E-05 42.0 0.9 23 456-478 51-73 (387)
233 4gyi_A RIO2 kinase; protein ki 70.2 1.5 5.1E-05 41.2 1.4 20 461-480 100-119 (397)
234 2jii_A Serine/threonine-protei 70.0 1 3.5E-05 41.6 0.4 22 457-478 43-64 (352)
235 3en9_A Glycoprotease, O-sialog 69.9 3.1 0.00011 41.1 3.8 19 460-478 340-358 (540)
236 3ttj_A Mitogen-activated prote 68.6 1.3 4.6E-05 42.8 0.8 22 456-477 62-83 (464)
237 1wak_A Serine/threonine-protei 68.6 1.4 4.9E-05 41.3 1.0 22 456-477 37-58 (397)
238 2j0j_A Focal adhesion kinase 1 68.1 1.6 5.6E-05 44.3 1.4 22 457-478 391-412 (656)
239 3q5i_A Protein kinase; CDPK, m 67.6 1.5 5.3E-05 42.8 1.0 24 455-478 35-58 (504)
240 1nxk_A MAP kinase-activated pr 64.7 1.8 6E-05 41.0 0.8 17 462-478 68-84 (400)
241 3lij_A Calcium/calmodulin depe 64.4 1.6 5.6E-05 42.5 0.5 23 456-478 37-59 (494)
242 2ozo_A Tyrosine-protein kinase 64.1 2.4 8.1E-05 42.7 1.6 16 463-478 343-358 (613)
243 2w1i_A JAK2; chromosomal rearr 62.5 2.1 7E-05 39.0 0.8 20 458-477 43-62 (326)
244 2lz0_A Uncharacterized protein 60.3 29 0.001 25.0 6.6 38 161-199 14-51 (100)
245 2lz0_A Uncharacterized protein 58.1 39 0.0013 24.3 6.9 46 178-224 7-52 (100)
246 2pzi_A Probable serine/threoni 56.1 2.7 9.1E-05 43.0 0.4 23 456-478 80-102 (681)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-53 Score=446.95 Aligned_cols=380 Identities=33% Similarity=0.552 Sum_probs=299.0
Q ss_pred CccccccchhhhcC-ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcc-cccCCCCCEEeccCCcccc
Q 011653 2 NNLVGMVSATIFNM-STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSS-ITNASKLTLLELGGNTFSG 79 (480)
Q Consensus 2 n~~~g~~~~~~~~~-~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 79 (480)
|.++|.+|..+.+. ++|++|++++|.+++.+|..+. .+++|++|++++|.++|.+|.. +.++++|++|++++|.+++
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 44555555555442 5555555555555555555555 4555555555555555555544 5555555555555555555
Q ss_pred cCcccccCCC-CCCEEeccCcccCCCCCcccccccccC--CCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCc
Q 011653 80 LIPDTIGNLR-NLAWLGLAYNNLTSSTSKLSFLSSLAN--CKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156 (480)
Q Consensus 80 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~ 156 (480)
.+|..+..++ +|+.|++++|.+++.. +..+.. +++|++|++++|.+++.+|..+..+ ++|++|++++|.++
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPI-----LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLS 431 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEEC-----CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEE
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCc-----ChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCccc
Confidence 5555555554 5555555555555431 133333 6778888888888888888888887 68888888888888
Q ss_pred ccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCC
Q 011653 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLS 236 (480)
Q Consensus 157 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~ 236 (480)
+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccc---------------------------------
Q 011653 237 NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDI--------------------------------- 283 (480)
Q Consensus 237 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------------------------------- 283 (480)
.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.|.+|..+
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 88888888888888888888888888888888888888877766543
Q ss_pred -------------------------------------cccccCCeeecCCccccccCCccccCCCCCcEEeCcCcccccc
Q 011653 284 -------------------------------------GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326 (480)
Q Consensus 284 -------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 326 (480)
..+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 3357789999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCCCCccccccccc
Q 011653 327 IPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAET 388 (480)
Q Consensus 327 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~~~~~~~~~~~~ 388 (480)
+|..++.+++|+.|||++|+++|.+|..+..++.|+.+|+++|+++|.+|..+++..+....
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 733 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999988887765443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.5e-51 Score=427.48 Aligned_cols=369 Identities=37% Similarity=0.587 Sum_probs=286.4
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccC-CCCCEEeccCCcccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNA-SKLTLLELGGNTFSG 79 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~ 79 (480)
+|.++|.+|..+.++++|++|++++|.+.|.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 47788888888888888888888888888776664 46777777777777777777776654 777777777777777
Q ss_pred cCcccccCCCCCCEEeccCcccCCC-CCcccccccccCCCCCCEEECcCCcccccCchhHhhcc----------------
Q 011653 80 LIPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS---------------- 142 (480)
Q Consensus 80 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~---------------- 142 (480)
.+|..++.+++|++|++++|.+++. |. ..+.++++|++|++++|.+++.+|..+..+.
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 7777777777777777777776633 31 2366666666666666666666666655542
Q ss_pred ----------ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCC
Q 011653 143 ----------KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC 212 (480)
Q Consensus 143 ----------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 212 (480)
++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3455566666666666777777777777777777777777777777778888888888888777887788
Q ss_pred CCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCee
Q 011653 213 HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGI 292 (480)
Q Consensus 213 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 292 (480)
.+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ecCCccccccCCccc-----------------------------------------------------------------
Q 011653 293 NLSENNLSGDMPATI----------------------------------------------------------------- 307 (480)
Q Consensus 293 ~l~~n~l~~~~~~~~----------------------------------------------------------------- 307 (480)
++++|.++|.+|..+
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 888888877666543
Q ss_pred -----cCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 308 -----GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 308 -----~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
+.+++|+.||+++|+++|.+|..++.+++|+.|+|++|.++|.+|..++.++.|+.+|+++|+++|.+|.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 2346688888888888888898899999999999999999999999999999999999999999988885
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-47 Score=390.36 Aligned_cols=367 Identities=18% Similarity=0.244 Sum_probs=319.0
Q ss_pred CCccccccchhhhcCccccceeccccc-----------------------------------------------------
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNS----------------------------------------------------- 27 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~----------------------------------------------------- 27 (480)
+|.++|.+|++++++++|++|++++|.
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 478999999999999999999999884
Q ss_pred -------------------------ccccCchhhhcCCCCCcEEEcccCcceec-----------------CCcccc--c
Q 011653 28 -------------------------LSGSLPSRIGLSLPTVEHLNLALNRFSGT-----------------IPSSIT--N 63 (480)
Q Consensus 28 -------------------------~~~~ip~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~ 63 (480)
++| ||..++ ++++|++|+|++|.+++. +|..++ +
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~ 247 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence 445 888888 899999999999999986 999999 9
Q ss_pred CCCCCEEeccCCcccccCcccccCCCCCCEEeccCcc-cCC--CCCcccccccccCCCCCCEEECcCCcccccCch--hH
Q 011653 64 ASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN-LTS--STSKLSFLSSLANCKKLRSLNFIGNPLDGFLPS--SI 138 (480)
Q Consensus 64 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~--~~ 138 (480)
+++|++|++++|.+.+.+|..++++++|++|++++|. +++ .|..+.-+..+..+++|++|++++|.++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 9999999999999999999999999999999999998 876 3522111112233499999999999999 8888 88
Q ss_pred hhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCC-CCceecccccccccCCccCCCCC--
Q 011653 139 GNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQK-LQGLFLAFNKLVGSCPDELCHLD-- 215 (480)
Q Consensus 139 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~-- 215 (480)
+.+ ++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 327 ~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 327 QKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp TTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred ccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 888 789999999999999999 8999999999999999999 78888999999 999999999998 7888887765
Q ss_pred CCCEEEccCccccccCCccCC-------CCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCcc-ccc--
Q 011653 216 RLDKLVLLGNKFSGSIPSCLS-------NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFD-IGN-- 285 (480)
Q Consensus 216 ~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~-- 285 (480)
+|++|++++|.+++.+|..+. .+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|.. +..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 899999999999999998888 7889999999999999544444556899999999999998 55543 332
Q ss_pred -----cccCCeeecCCccccccCCcccc--CCCCCcEEeCcCccccccCCccccCCCCCCEEEc------cCCcccccCc
Q 011653 286 -----LKVLLGINLSENNLSGDMPATIG--GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL------SNNKISGSIP 352 (480)
Q Consensus 286 -----~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l------~~n~l~~~~p 352 (480)
+++|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|.+.+.+|
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 239999999999999 7888887 99999999999999997 8999999999999999 5688899999
Q ss_pred cccccCCCCCEEECccCcccccCCCC
Q 011653 353 KSMEKLFYLRELNLSFNELEGEIPSG 378 (480)
Q Consensus 353 ~~l~~~~~L~~l~l~~n~~~~~~p~~ 378 (480)
..+..+++|+.+++++|.+ +.+|..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHh
Confidence 9999999999999999999 788864
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-46 Score=385.46 Aligned_cols=354 Identities=23% Similarity=0.301 Sum_probs=320.7
Q ss_pred CccccccchhhhcCccccceeccccccccc-----------------Cchhhh-cCCCCCcEEEcccCcceecCCccccc
Q 011653 2 NNLVGMVSATIFNMSTLKIIILINNSLSGS-----------------LPSRIG-LSLPTVEHLNLALNRFSGTIPSSITN 63 (480)
Q Consensus 2 n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~-----------------ip~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~ 63 (480)
|+++| ||++++++++|++|++++|.++|. +|+.++ ..+++|++|++++|.+.+.+|..+++
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 68999 999999999999999999999986 998875 25999999999999999999999999
Q ss_pred CCCCCEEeccCCc-ccc-cCcccccCC------CCCCEEeccCcccCCCCCcccccc--cccCCCCCCEEECcCCccccc
Q 011653 64 ASKLTLLELGGNT-FSG-LIPDTIGNL------RNLAWLGLAYNNLTSSTSKLSFLS--SLANCKKLRSLNFIGNPLDGF 133 (480)
Q Consensus 64 ~~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~ 133 (480)
+++|++|++++|. +++ .+|..++.+ ++|++|++++|.++..| . .+.++++|++|++++|.++|.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip------~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP------VETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC------CHHHHTTCTTCCEEECCSCCCEEE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC------chhhhccCCCCCEEeCcCCcCccc
Confidence 9999999999998 998 889888876 99999999999999666 6 799999999999999999999
Q ss_pred CchhHhhccccCcEEEeecccCcccCcccccCCCC-CCEEEcccccccccCCcCcCCCC--CCCceecccccccccCCcc
Q 011653 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISNLSN-LLTLVLEGNKLTGPIPTTFGRLQ--KLQGLFLAFNKLVGSCPDE 210 (480)
Q Consensus 134 ~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~ 210 (480)
+| .+..+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+..|..
T Consensus 346 ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 99 88887 78999999999999 89999999999 999999999999 7888887755 8999999999999999998
Q ss_pred CC-------CCCCCCEEEccCccccccCCcc-CCCCCCCCEEEcCCccccccCCccccC-C-------CCCCEEecCCCc
Q 011653 211 LC-------HLDRLDKLVLLGNKFSGSIPSC-LSNLTSLRFLYLGSNRFTSVIPSTFWR-L-------KDILFLDFSSNL 274 (480)
Q Consensus 211 ~~-------~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~-~-------~~L~~L~l~~n~ 274 (480)
+. .+++|++|++++|.++ .+|.. +..+++|+.|++++|.++ .+|..... . ++|+.|++++|.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc
Confidence 88 8889999999999999 55554 556899999999999999 55554433 2 289999999999
Q ss_pred cCCCCCcccc--ccccCCeeecCCccccccCCccccCCCCCcEEeC------cCccccccCCccccCCCCCCEEEccCCc
Q 011653 275 LVGTLSFDIG--NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL------AYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 275 l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 346 (480)
++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|.
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 99 6777776 99999999999999997 8999999999999999 5678888999999999999999999999
Q ss_pred ccccCccccccCCCCCEEECccCcccc
Q 011653 347 ISGSIPKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 347 l~~~~p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
+ +.+|..+. +.|+.+++++|++..
T Consensus 578 l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 578 I-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp C-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred C-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9 68888776 799999999999875
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-45 Score=381.83 Aligned_cols=366 Identities=20% Similarity=0.243 Sum_probs=307.1
Q ss_pred CCccccccchhhhcCccccceec-cccccccc------------------------------------------------
Q 011653 1 MNNLVGMVSATIFNMSTLKIIIL-INNSLSGS------------------------------------------------ 31 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l-~~~~~~~~------------------------------------------------ 31 (480)
+|+++|.+|++++++++|++|+| ++|.+.|.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 47899999999999999999999 77765544
Q ss_pred ----------------------------CchhhhcCCCCCcEEEcccCccee-----------------cCCcccc--cC
Q 011653 32 ----------------------------LPSRIGLSLPTVEHLNLALNRFSG-----------------TIPSSIT--NA 64 (480)
Q Consensus 32 ----------------------------ip~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~~ 64 (480)
||..++ ++++|+.|+|++|.+++ .+|..++ ++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhceeccccCcccchhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 788887 79999999999999987 3888887 99
Q ss_pred CCCCEEeccCCcccccCcccccCCCCCCEEeccCcc-cCC--CCCcccccc-cccCCCCCCEEECcCCcccccCch--hH
Q 011653 65 SKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN-LTS--STSKLSFLS-SLANCKKLRSLNFIGNPLDGFLPS--SI 138 (480)
Q Consensus 65 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~p~--~~ 138 (480)
++|++|+|++|.+.+.+|..++++++|+.|++++|. +++ .|..+.-+. .+..+++|++|++++|.++ .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 999999999999988999889999999999999997 776 342222111 4455669999999999998 8888 88
Q ss_pred hhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCC-CCceecccccccccCCccCCCCCC-
Q 011653 139 GNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQK-LQGLFLAFNKLVGSCPDELCHLDR- 216 (480)
Q Consensus 139 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~- 216 (480)
+.+ ++|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++.
T Consensus 570 ~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 570 QKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp TTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 887 68999999999988 788 8889999999999999988 78888888988 999999999988 77887777654
Q ss_pred -CCEEEccCccccccCCccC---C--CCCCCCEEEcCCccccccCCccc-cCCCCCCEEecCCCccCCCCCcccc-----
Q 011653 217 -LDKLVLLGNKFSGSIPSCL---S--NLTSLRFLYLGSNRFTSVIPSTF-WRLKDILFLDFSSNLLVGTLSFDIG----- 284 (480)
Q Consensus 217 -L~~L~l~~n~l~~~~p~~l---~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~----- 284 (480)
|+.|++++|.+.+.+|... . .+++|+.|++++|.+. .+|..+ ..+++|+.|+|++|.+. .+|..+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 9999999999987666432 2 3458999999999998 456554 47899999999999998 5554433
Q ss_pred ---ccccCCeeecCCccccccCCcccc--CCCCCcEEeCcCccccccCCccccCCCCCCEEEccC------CcccccCcc
Q 011653 285 ---NLKVLLGINLSENNLSGDMPATIG--GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSN------NKISGSIPK 353 (480)
Q Consensus 285 ---~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~------n~l~~~~p~ 353 (480)
++++|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |.+.+.+|.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 2349999999999999 7888887 89999999999999997 899999999999999976 788899999
Q ss_pred ccccCCCCCEEECccCcccccCCCC
Q 011653 354 SMEKLFYLRELNLSFNELEGEIPSG 378 (480)
Q Consensus 354 ~l~~~~~L~~l~l~~n~~~~~~p~~ 378 (480)
.+..+++|+.|++++|.+ +.+|..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred HHhcCCCCCEEECCCCCC-CccCHh
Confidence 999999999999999999 788874
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-43 Score=363.47 Aligned_cols=367 Identities=22% Similarity=0.236 Sum_probs=226.8
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++..|.+|.++++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..++++++|++|++++|.+++.
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhcc-CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 4788888899999999999999999999966677777 899999999999999988899999999999999999999987
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCc--EEEeecccCccc
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLE--TLGIANCSISGN 158 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~--~L~l~~n~~~~~ 158 (480)
.+..++++++|++|++++|.+++.+. ..+..+++|++|++++|.+++..|..++.+ ++|+ +|++++|.+++.
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCCCC-----CTTCCCTTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCCCEE
T ss_pred CcchhccCCcccEEECCCCcccccCc-----ccccCCcccCEEEcccCcccccChhhhhhh-cccceeEEecCCCccCcc
Confidence 78889999999999999999987621 234447788888888887776666666655 4555 555555544432
Q ss_pred C---------------------------------------------------------------------------cccc
Q 011653 159 I---------------------------------------------------------------------------PPAI 163 (480)
Q Consensus 159 ~---------------------------------------------------------------------------~~~l 163 (480)
. +..+
T Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~ 274 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274 (606)
T ss_dssp CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence 2 2234
Q ss_pred cCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCcc-CCCCCCCC
Q 011653 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSC-LSNLTSLR 242 (480)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L~ 242 (480)
..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 45566666666666665 45555666666666666666655544444444555555555554444333322 34444444
Q ss_pred EEEcCCccc--------------------------cccCCccccCCCCCCEEecCCCccCCCCCcc-ccccccCCeeecC
Q 011653 243 FLYLGSNRF--------------------------TSVIPSTFWRLKDILFLDFSSNLLVGTLSFD-IGNLKVLLGINLS 295 (480)
Q Consensus 243 ~L~l~~n~~--------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~ 295 (480)
.|++++|.+ .+..|..+..+++|+.|++++|.+.+..+.. +..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 444444444 3333444444444444444444444333222 3444444444444
Q ss_pred CccccccCCccccCCCCCcEEeCcCcccccc---CCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccc
Q 011653 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ---IPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 296 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
+|.+++..|..+..+++|+.|++++|++++. .+..+..+++|++|++++|.+++..|..+..++.|+.+++++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 4444444444444445555555555544431 1233444555555555555555444555555555555555555555
Q ss_pred ccC
Q 011653 373 GEI 375 (480)
Q Consensus 373 ~~~ 375 (480)
+..
T Consensus 514 ~~~ 516 (606)
T 3t6q_A 514 SSS 516 (606)
T ss_dssp GGG
T ss_pred cCC
Confidence 443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-43 Score=362.92 Aligned_cols=372 Identities=22% Similarity=0.251 Sum_probs=307.3
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++..|.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++...+.+..+++|++|++++|.+++.
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 4778888888999999999999999998843355565 789999999999988864334455588899999999888888
Q ss_pred CcccccCCCCCC--EEeccCcccCCCCC-ccc------------------------------------------------
Q 011653 81 IPDTIGNLRNLA--WLGLAYNNLTSSTS-KLS------------------------------------------------ 109 (480)
Q Consensus 81 ~~~~~~~l~~L~--~L~l~~n~l~~~~~-~~~------------------------------------------------ 109 (480)
.+..++.+++|+ .|++++|.+++.+. .+.
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 787788888888 77777777665421 110
Q ss_pred --------------------c-cccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCC
Q 011653 110 --------------------F-LSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSN 168 (480)
Q Consensus 110 --------------------~-~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 168 (480)
+ +..+.++++|++|++++|.++ .+|..+..+ ++|++|++++|.+++..|..+..+++
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhccCc
Confidence 0 123777899999999999988 788888887 68999999999998877888899999
Q ss_pred CCEEEcccccccccCCc-CcCCCCCCCceecccccccccC--CccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEE
Q 011653 169 LLTLVLEGNKLTGPIPT-TFGRLQKLQGLFLAFNKLVGSC--PDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245 (480)
Q Consensus 169 L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 245 (480)
|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 99999999988876655 4888999999999999888765 77888899999999999998888888888899999999
Q ss_pred cCCccccccCCc-cccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcccccc---CCccccCCCCCcEEeCcCc
Q 011653 246 LGSNRFTSVIPS-TFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD---MPATIGGLKSLQIMDLAYN 321 (480)
Q Consensus 246 l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n 321 (480)
+++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 999998876654 478889999999999999888888888899999999999988762 3356788899999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 322 RLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 322 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
++++..|..+..+++|++|++++|++++..|..+..++.| .+++++|.+++..|
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 9988888888889999999999999988888888888888 89999998886544
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-44 Score=376.59 Aligned_cols=354 Identities=21% Similarity=0.252 Sum_probs=314.4
Q ss_pred CccccccchhhhcCccccceecccccccc-----------------cCchhhh-cCCCCCcEEEcccCcceecCCccccc
Q 011653 2 NNLVGMVSATIFNMSTLKIIILINNSLSG-----------------SLPSRIG-LSLPTVEHLNLALNRFSGTIPSSITN 63 (480)
Q Consensus 2 n~~~g~~~~~~~~~~~L~~L~l~~~~~~~-----------------~ip~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~ 63 (480)
|+++| ||+++.++++|++|++++|.++| .+|+.++ ..+++|+.|+|++|.+.+.+|..+++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 78899 99999999999999999999998 3998863 36999999999999999999999999
Q ss_pred CCCCCEEeccCCc-ccc-cCcccccCCC-------CCCEEeccCcccCCCCCcccccc--cccCCCCCCEEECcCCcccc
Q 011653 64 ASKLTLLELGGNT-FSG-LIPDTIGNLR-------NLAWLGLAYNNLTSSTSKLSFLS--SLANCKKLRSLNFIGNPLDG 132 (480)
Q Consensus 64 ~~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~ 132 (480)
+++|++|++++|. +++ .+|..++.++ +|+.|++++|.++..| . .+.++++|++|++++|.++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip------~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP------ASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC------CHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC------ChhhhhcCCCCCEEECCCCCcc-
Confidence 9999999999998 998 7888776665 9999999999998656 6 7999999999999999999
Q ss_pred cCchhHhhccccCcEEEeecccCcccCcccccCCCC-CCEEEcccccccccCCcCcCCCCC--CCceecccccccccCCc
Q 011653 133 FLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSN-LLTLVLEGNKLTGPIPTTFGRLQK--LQGLFLAFNKLVGSCPD 209 (480)
Q Consensus 133 ~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~ 209 (480)
.+| .++.+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|.
T Consensus 587 ~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 888 78887 78999999999999 89999999999 999999999999 78888877654 99999999999987664
Q ss_pred cC---C--CCCCCCEEEccCccccccCCccC-CCCCCCCEEEcCCccccccCCccccC--------CCCCCEEecCCCcc
Q 011653 210 EL---C--HLDRLDKLVLLGNKFSGSIPSCL-SNLTSLRFLYLGSNRFTSVIPSTFWR--------LKDILFLDFSSNLL 275 (480)
Q Consensus 210 ~~---~--~~~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~l~~n~l 275 (480)
.. . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|++. .+|..+.. +++|+.|+|++|.+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence 32 2 3458999999999999 667655 47899999999999998 56655443 23899999999999
Q ss_pred CCCCCcccc--ccccCCeeecCCccccccCCccccCCCCCcEEeCcC------ccccccCCccccCCCCCCEEEccCCcc
Q 011653 276 VGTLSFDIG--NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY------NRLEGQIPESFDDLTSLEVMNLSNNKI 347 (480)
Q Consensus 276 ~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~~~p~~~~~l~~L~~L~l~~n~l 347 (480)
+ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++
T Consensus 741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 741 T-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp C-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred c-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8 7777776 89999999999999996 899999999999999976 788889999999999999999999999
Q ss_pred cccCccccccCCCCCEEECccCccccc
Q 011653 348 SGSIPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 348 ~~~~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
+.+|..+. ++|+.+++++|++...
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred -CccCHhhc--CCCCEEECCCCCCCcc
Confidence 68998876 6999999999998643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-43 Score=363.38 Aligned_cols=368 Identities=22% Similarity=0.201 Sum_probs=284.8
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..++++++|++|++++|.+++.
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc
Confidence 4778888888999999999999999999855566666 899999999999999988899999999999999999999988
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc------------------
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS------------------ 142 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~------------------ 142 (480)
.+..++++++|++|++++|.+++.. ++..+.++++|++|++++|.+++..|..++.+.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred cccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence 8788999999999999999988631 127789999999999999988876665444331
Q ss_pred --------ccCcEEEeecccCcc---------------------------------------------------------
Q 011653 143 --------KSLETLGIANCSISG--------------------------------------------------------- 157 (480)
Q Consensus 143 --------~~L~~L~l~~n~~~~--------------------------------------------------------- 157 (480)
.+|++|++++|.+++
T Consensus 196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 023334443332210
Q ss_pred -----------------------cCcccccCCCCCCEEEcccccccccCCc--------------------CcCCCCCCC
Q 011653 158 -----------------------NIPPAISNLSNLLTLVLEGNKLTGPIPT--------------------TFGRLQKLQ 194 (480)
Q Consensus 158 -----------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------------~~~~~~~L~ 194 (480)
.+| .+..+++|++|++++|.+ +.+|. .+..+++|+
T Consensus 276 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 276 DDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp GGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred ccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCC
Confidence 011 233334444455554444 23331 344667777
Q ss_pred ceeccccccccc--CCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCC-ccccCCCCCCEEecC
Q 011653 195 GLFLAFNKLVGS--CPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP-STFWRLKDILFLDFS 271 (480)
Q Consensus 195 ~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~ 271 (480)
+|++++|.+++. +|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 788888777765 47777888888888888888874 56778888888888888888887766 677888888888888
Q ss_pred CCccCCCCCccccccccCCeeecCCccccc-cCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCccccc
Q 011653 272 SNLLVGTLSFDIGNLKVLLGINLSENNLSG-DMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350 (480)
Q Consensus 272 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 350 (480)
+|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|++++..|..+..+++|++|++++|++++.
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence 888888888888888888888888888887 3677888888888888888888887788888888888888888888887
Q ss_pred CccccccCCCCCEEECccCcccccCCC
Q 011653 351 IPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 351 ~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
.|..+..+++|+.+++++|+++ .+|.
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 7888888888888888888887 4554
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=353.58 Aligned_cols=368 Identities=21% Similarity=0.243 Sum_probs=225.1
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++..+.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..+.++++|++|++++|.+++.
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC
Confidence 4677887788899999999999999988843344455 789999999999999877778889999999999999998877
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccC----cEEEeecccCc
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL----ETLGIANCSIS 156 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L----~~L~l~~n~~~ 156 (480)
.+..++++++|++|++++|.+++.+ ++..+.++++|++|++++|.+++..|..+..+ ++| ++|++++|.++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECTTSCCCEECGGGGHHH-HTCTTCCCEEECTTCCCC
T ss_pred CCccccccccccEEecCCCccceec----ChhhhcccCCCCEEeCcCCccceecHHHccch-hccchhhhhcccCCCCce
Confidence 6667889999999999999887631 12678889999999999998887666666655 445 55555555443
Q ss_pred cc------------------------------------------------------------------------------
Q 011653 157 GN------------------------------------------------------------------------------ 158 (480)
Q Consensus 157 ~~------------------------------------------------------------------------------ 158 (480)
+.
T Consensus 191 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 22
Q ss_pred ---CcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCcc--------------------CCCCC
Q 011653 159 ---IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDE--------------------LCHLD 215 (480)
Q Consensus 159 ---~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------------------~~~~~ 215 (480)
.|..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. ...++
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCC
Confidence 2233444566666666666665 344444433 4444444443333 11110 03445
Q ss_pred CCCEEEccCccccccC--Ccc-----------------------CCCCCCCCEEEcCCccccccCC-ccccCCCCCCEEe
Q 011653 216 RLDKLVLLGNKFSGSI--PSC-----------------------LSNLTSLRFLYLGSNRFTSVIP-STFWRLKDILFLD 269 (480)
Q Consensus 216 ~L~~L~l~~n~l~~~~--p~~-----------------------l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ 269 (480)
+|++|++++|.+++.. |.. +..+++|+.|++++|.+.+..+ ..+..+++|+.|+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 5555555555554322 333 4444445555555544444333 3344455555555
Q ss_pred cCCCccCCCCCccccccccCCeeecCCcccc-ccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCccc
Q 011653 270 FSSNLLVGTLSFDIGNLKVLLGINLSENNLS-GDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 270 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 348 (480)
+++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|+++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 5555555545545555555555555555554 345555555555555555555555444555555555555555555555
Q ss_pred ccCccccccCCCCCEEECccCcccccCCC
Q 011653 349 GSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 349 ~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
+..|..+..+++|+.+++++|++.|.+|.
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 54444455555555555555555555443
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-42 Score=354.35 Aligned_cols=360 Identities=23% Similarity=0.202 Sum_probs=301.2
Q ss_pred ccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCccccc
Q 011653 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (480)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 86 (480)
.+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+++..|.+++++++|++|++++|.+++..|..|+
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4565544 7899999999999955555666 899999999999999988889999999999999999999999899999
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccc-cCchhHhhccccCcEEEeecccCcccCcccccC
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG-FLPSSIGNLSKSLETLGIANCSISGNIPPAISN 165 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 165 (480)
++++|++|++++|.+++.+. ..+.++++|++|++++|.+.+ .+|..++.+ ++|++|++++|.+++..+..+..
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLES-----FPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSS-----SCCTTCTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHH
T ss_pred CcccCCEEEccCCccccccc-----cccCCCCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhh
Confidence 99999999999999988743 568999999999999999986 679999998 79999999999998776665544
Q ss_pred CCCCC----EEEcccccccccCCc--------------------------------------------------------
Q 011653 166 LSNLL----TLVLEGNKLTGPIPT-------------------------------------------------------- 185 (480)
Q Consensus 166 l~~L~----~L~l~~n~~~~~~~~-------------------------------------------------------- 185 (480)
+++|+ +|++++|.+++..+.
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 43332 344444433322211
Q ss_pred ----------------------------------------------CcCCCCCCCceecccccccccCCc----------
Q 011653 186 ----------------------------------------------TFGRLQKLQGLFLAFNKLVGSCPD---------- 209 (480)
Q Consensus 186 ----------------------------------------------~~~~~~~L~~L~l~~n~~~~~~~~---------- 209 (480)
.+..+++|++|++++|.+ +.+|.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~ 334 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLT 334 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEE
T ss_pred hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceee
Confidence 344445566666666655 34442
Q ss_pred ----------cCCCCCCCCEEEccCcccccc--CCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCC
Q 011653 210 ----------ELCHLDRLDKLVLLGNKFSGS--IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277 (480)
Q Consensus 210 ----------~~~~~~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 277 (480)
.+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+
T Consensus 335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp EESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred ccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence 234567788888888888765 47888999999999999999886 56889999999999999999998
Q ss_pred CCC-ccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccc-cCCccccCCCCCCEEEccCCcccccCcccc
Q 011653 278 TLS-FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEG-QIPESFDDLTSLEVMNLSNNKISGSIPKSM 355 (480)
Q Consensus 278 ~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 355 (480)
..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..++.+++|++|++++|.+++..|..+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 887 678999999999999999999999999999999999999999998 478999999999999999999999999999
Q ss_pred ccCCCCCEEECccCcccccCCC
Q 011653 356 EKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 356 ~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
..+++|+.+++++|++++..|.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGG
T ss_pred cccccCCEEECCCCcCCCcCHH
Confidence 9999999999999999987664
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-42 Score=344.77 Aligned_cols=357 Identities=20% Similarity=0.221 Sum_probs=301.6
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecC-CcccccCCCCCEEeccCCcccccCcccccCCCCCCEE
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTI-PSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWL 94 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 94 (480)
++|++|++++|.+++..|..+. .+++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 6789999999999866677777 8999999999999887555 5578889999999999999988888889999999999
Q ss_pred eccCcccCCC-CCcccccccccCCCCCCEEECcCCcccccCchh-HhhccccCcEEEeecccCcccCcccccCC--CCCC
Q 011653 95 GLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSS-IGNLSKSLETLGIANCSISGNIPPAISNL--SNLL 170 (480)
Q Consensus 95 ~l~~n~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l--~~L~ 170 (480)
++++|.+++. +.. ..+.++++|++|++++|.+++..|.. +..+ ++|++|++++|.+++..+..+..+ .+|+
T Consensus 109 ~L~~n~l~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 109 TLTQCNLDGAVLSG----NFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp ECTTSCCBTHHHHS----STTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred eCCCCCCCccccCc----ccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999988763 210 34888899999999999998777776 6666 789999999999988888777765 6888
Q ss_pred EEEcccccccccCCcCc--------CCCCCCCceecccccccccCCccCCCC---CCCCEEEccCccccccC--------
Q 011653 171 TLVLEGNKLTGPIPTTF--------GRLQKLQGLFLAFNKLVGSCPDELCHL---DRLDKLVLLGNKFSGSI-------- 231 (480)
Q Consensus 171 ~L~l~~n~~~~~~~~~~--------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~-------- 231 (480)
.|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+... ++|+.|++++|...+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 99999998886554433 366889999999999888777655443 78899999888654321
Q ss_pred --CccCC--CCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccc
Q 011653 232 --PSCLS--NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATI 307 (480)
Q Consensus 232 --p~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 307 (480)
+..+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 11122 23689999999999999999999999999999999999999889899999999999999999998888999
Q ss_pred cCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCCC
Q 011653 308 GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378 (480)
Q Consensus 308 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~~ 378 (480)
..+++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.+|..
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999999999999999888999999999999999999999777777889999999999999999998853
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-41 Score=349.76 Aligned_cols=367 Identities=25% Similarity=0.297 Sum_probs=226.4
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+.+++++++|++|++++|.+++.
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence 3677777777788888888888888888866666666 788888888888888754444688888888888888888877
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhc-cccCcEEEeecccCcccC
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNL-SKSLETLGIANCSISGNI 159 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~~L~~L~l~~n~~~~~~ 159 (480)
.|..|+++++|++|++++|.+++.+. ..+.++++|++|++++|.+++..+..+... .++|++|++++|.+++..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKL-----GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCC-----CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ChhHccccCCCCEEECCCCcccccCc-----hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 77778888888888888888877632 556777888888888887776655554321 145667777666665544
Q ss_pred cc---------------------------------------------------cccCCC--CCCEEEcccccccccCCcC
Q 011653 160 PP---------------------------------------------------AISNLS--NLLTLVLEGNKLTGPIPTT 186 (480)
Q Consensus 160 ~~---------------------------------------------------~l~~l~--~L~~L~l~~n~~~~~~~~~ 186 (480)
|. .+..++ +|++|++++|.+++..|..
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 43 333332 2666666666666555566
Q ss_pred cCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccc-----cCCc----cCCCCCCCCEEEcCCccccccCCc
Q 011653 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG-----SIPS----CLSNLTSLRFLYLGSNRFTSVIPS 257 (480)
Q Consensus 187 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~p~----~l~~l~~L~~L~l~~n~~~~~~~~ 257 (480)
++.+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .+..+++|+.|++++|.+.+..+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 6666666666666666665555444444444444433322111 1111 233444444445555554444444
Q ss_pred cccCCCCCCEEecCC----------------------------CccCCCCCccccccccCCeeecCCccccccCC-cccc
Q 011653 258 TFWRLKDILFLDFSS----------------------------NLLVGTLSFDIGNLKVLLGINLSENNLSGDMP-ATIG 308 (480)
Q Consensus 258 ~~~~~~~L~~L~l~~----------------------------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 308 (480)
.+..+++|++|++++ |.+.+..+..+..+++|+.|++++|.+++.+| ..+.
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 444444444443333 23333333344444555555555555544333 3344
Q ss_pred CCCCCcEEeCcCcc------------------------cc--ccCCccccCCCCCCEEEccCCcccccCccccccCCCCC
Q 011653 309 GLKSLQIMDLAYNR------------------------LE--GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLR 362 (480)
Q Consensus 309 ~~~~L~~L~l~~n~------------------------l~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~ 362 (480)
.+++|+.|++++|+ +. +.+|..+..+++|++|++++|.+++..|..+..++.|+
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence 44444444444444 33 34566677777777777777777766666677777788
Q ss_pred EEECccCcccc
Q 011653 363 ELNLSFNELEG 373 (480)
Q Consensus 363 ~l~l~~n~~~~ 373 (480)
.+++++|.+++
T Consensus 508 ~L~Ls~N~l~~ 518 (680)
T 1ziw_A 508 ILDLQHNNLAR 518 (680)
T ss_dssp EEECCSSCCGG
T ss_pred EEeCCCCCccc
Confidence 88888887765
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-42 Score=363.40 Aligned_cols=369 Identities=23% Similarity=0.247 Sum_probs=272.3
Q ss_pred CCccccccchhhhcCccccceecccccccccCc-hhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLP-SRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG 79 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 79 (480)
+|.+++..|..|.++++|++|++++|...+.++ ..+. .+++|++|+|++|.+++..|..++++++|++|+|++|.+++
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS-SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc-CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 478889899999999999999999998777884 4555 89999999999999998889999999999999999999998
Q ss_pred cCccc--ccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc-ccC-----------
Q 011653 80 LIPDT--IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS-KSL----------- 145 (480)
Q Consensus 80 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~~L----------- 145 (480)
.+|.. +.++++|++|++++|.+++.+. ...+.++++|++|++++|.+++..+..+..+. ++|
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYL----HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCC----CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ccccCccccccCCCCEEECCCCccccccc----chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 77665 8999999999999999987631 15689999999999999999887777766541 234
Q ss_pred -------------------cEEEeecccCcccCcccccC--------------------------------------CCC
Q 011653 146 -------------------ETLGIANCSISGNIPPAISN--------------------------------------LSN 168 (480)
Q Consensus 146 -------------------~~L~l~~n~~~~~~~~~l~~--------------------------------------l~~ 168 (480)
++|++++|.+++.++..+.. .++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 45555555444333322211 256
Q ss_pred CCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCC
Q 011653 169 LLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (480)
Q Consensus 169 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 248 (480)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 77777777777777777788888888888888888888888888888888888888888877788888888888888888
Q ss_pred ccccccCCccccCCCCCCEEecCCCccCCCCC----------------------------------------cccccccc
Q 011653 249 NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS----------------------------------------FDIGNLKV 288 (480)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----------------------------------------~~~~~~~~ 288 (480)
|.+.+..+..|..+++|+.|++++|.+.+... ..+..+++
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCc
Confidence 88887777778888888888888887654210 00123455
Q ss_pred CCeeecCCccccc------------------------------cCCccccCCCCCcEEeCcCccccccCCccccCCCCCC
Q 011653 289 LLGINLSENNLSG------------------------------DMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLE 338 (480)
Q Consensus 289 L~~L~l~~n~l~~------------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 338 (480)
|+.|++++|.+++ ..+..+..+++|+.|+|++|++++..|..+..+++|+
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence 5555555555442 1123355566677777777777766666677777777
Q ss_pred EEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 339 VMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 339 ~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
.|++++|++++..|..+. ++|+.+++++|.+++..|
T Consensus 508 ~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 508 GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 777777777755444433 445555555554444433
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=343.42 Aligned_cols=353 Identities=22% Similarity=0.274 Sum_probs=218.4
Q ss_pred CccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccC
Q 011653 2 NNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLI 81 (480)
Q Consensus 2 n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 81 (480)
|+++ .+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..++++++|++|++++|.++. +
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 84 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I 84 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-E
T ss_pred CCcc-ccccccc--ccccEEECCCCcccccChhhcc-ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-c
Confidence 5666 4676665 7888888888888844445565 78888888888888887777888888888888888888874 4
Q ss_pred cccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccC--cEEEeecccC--cc
Q 011653 82 PDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL--ETLGIANCSI--SG 157 (480)
Q Consensus 82 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L--~~L~l~~n~~--~~ 157 (480)
|.. .+++|++|++++|.+++.+ ++..++++++|++|++++|.+++. .+..+ ++| ++|++++|.+ .+
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~----~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALP----ICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-AHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCC----CCGGGGGCTTCCEEEEEESSCCGG---GGGGG-TTSCEEEEEEEECTTTTSS
T ss_pred Ccc--ccCCccEEeccCCcccccc----chhhhccCCcceEEEecCcccchh---hcccc-ccceeeEEEeecccccccc
Confidence 544 6888888888888887642 116778888888888888887752 34444 456 8888887777 55
Q ss_pred cCcccccCCC----------------------------------------------------------------------
Q 011653 158 NIPPAISNLS---------------------------------------------------------------------- 167 (480)
Q Consensus 158 ~~~~~l~~l~---------------------------------------------------------------------- 167 (480)
..|..+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 5555444422
Q ss_pred -------------CCCEEEcccccccccCCcCc-----CCCCCCCceecccccccccCC-ccCCCC---CCCCEEEccCc
Q 011653 168 -------------NLLTLVLEGNKLTGPIPTTF-----GRLQKLQGLFLAFNKLVGSCP-DELCHL---DRLDKLVLLGN 225 (480)
Q Consensus 168 -------------~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~---~~L~~L~l~~n 225 (480)
+|++|++++|.++|.+|..+ +.+++|+.++++.|.+ .+| ..+..+ .+|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 45555555555555555555 5555555555555544 222 111111 23444444444
Q ss_pred cccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCC--CCCccccccccCCeeecCCccccccC
Q 011653 226 KFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG--TLSFDIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 226 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
.+.... ....+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 332111 01455666666666666666566666666666666666666654 34445566666666666666666544
Q ss_pred Cc-cccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 304 PA-TIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 304 ~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
|. .+..+++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..++.|+.+++++|+++ .+|.
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 43 255566666666666666655555443 45666666666666 55555556666666666666665 3443
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-40 Score=347.07 Aligned_cols=370 Identities=22% Similarity=0.268 Sum_probs=310.1
Q ss_pred CccccccchhhhcCcc--ccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccc
Q 011653 2 NNLVGMVSATIFNMST--LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG 79 (480)
Q Consensus 2 n~~~g~~~~~~~~~~~--L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 79 (480)
|.+++..|..+.+++. |++|++++|.+++..|..+. .+++|++|++++|.+++..|..+.++++|++|++++|...+
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 6677888888888765 89999998888866666666 78889999998888888888888888899999988765443
Q ss_pred -----cCcc----cccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCccccc-Cc-hhHhhc-cccCcE
Q 011653 80 -----LIPD----TIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF-LP-SSIGNL-SKSLET 147 (480)
Q Consensus 80 -----~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~p-~~~~~~-~~~L~~ 147 (480)
.+|. .+..+++|++|++++|.+++.+. ..+.++++|++|++++|.+... ++ ..+..+ .++|+.
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-----NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCT-----TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCCh-----hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 2232 57788899999999998887742 5688889999999998875432 22 122222 147999
Q ss_pred EEeecccCcccCcccccCCCCCCEEEcccccccccCC-cCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCcc
Q 011653 148 LGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNK 226 (480)
Q Consensus 148 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 226 (480)
|++++|.+++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 9999999998888999999999999999999987666 678999999999999999998888999999999999999998
Q ss_pred cc--ccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCC--------ccccccccCCeeecCC
Q 011653 227 FS--GSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS--------FDIGNLKVLLGINLSE 296 (480)
Q Consensus 227 l~--~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~l~~ 296 (480)
+. +.+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 86 5788899999999999999999998888889999999999999999876422 2367889999999999
Q ss_pred ccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccc-cCCCCCEEECccCcccccC
Q 011653 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSME-KLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 297 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~~~~L~~l~l~~n~~~~~~ 375 (480)
|.++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|..+. .+++|+.+++++|++.|.+
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999944445689999999999999999976667788999999999999999988887777 7899999999999999988
Q ss_pred CC
Q 011653 376 PS 377 (480)
Q Consensus 376 p~ 377 (480)
+.
T Consensus 626 ~~ 627 (680)
T 1ziw_A 626 ES 627 (680)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=358.73 Aligned_cols=370 Identities=21% Similarity=0.232 Sum_probs=253.1
Q ss_pred Ccccccc-chhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcc--cccCCCCCEEeccCCccc
Q 011653 2 NNLVGMV-SATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSS--ITNASKLTLLELGGNTFS 78 (480)
Q Consensus 2 n~~~g~~-~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~ 78 (480)
|++.+.+ |.+|.++++|++|++++|.+.+..|..+. .+++|++|+|++|.+++.+|.. +.++++|++|++++|.++
T Consensus 58 n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 58 QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 3345555 55677777777777777777755566666 6777777777777777655554 777777777777777777
Q ss_pred ccCc-ccccCCCCCCEEeccCcccCCC-CCccc--------------------ccccccCCCC------CCEEECcCCcc
Q 011653 79 GLIP-DTIGNLRNLAWLGLAYNNLTSS-TSKLS--------------------FLSSLANCKK------LRSLNFIGNPL 130 (480)
Q Consensus 79 ~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~--------------------~~~~l~~~~~------L~~L~l~~n~l 130 (480)
+..+ ..|+++++|++|++++|.+++. +..+. .+..+..+++ |++|++++|.+
T Consensus 137 ~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 6544 4577777777777777776554 21110 0012222332 67777777766
Q ss_pred cccCchhHhhc-------------------------------------cccCcEEEeecccCcccCcccccCCCCCCEEE
Q 011653 131 DGFLPSSIGNL-------------------------------------SKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (480)
Q Consensus 131 ~~~~p~~~~~~-------------------------------------~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 173 (480)
++..|..+... .++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 217 ~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296 (844)
T ss_dssp STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence 55544433321 13566777777766666666666677777777
Q ss_pred cccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccc
Q 011653 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (480)
Q Consensus 174 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 253 (480)
+++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 77777666666666667777777777776666666666666666667666666665555556666666666666665543
Q ss_pred cC------------------Cc----------------------cccCCCCCCEEecCCCccCC----------------
Q 011653 254 VI------------------PS----------------------TFWRLKDILFLDFSSNLLVG---------------- 277 (480)
Q Consensus 254 ~~------------------~~----------------------~~~~~~~L~~L~l~~n~l~~---------------- 277 (480)
.. |. .+..+++|+.|++++|.+++
T Consensus 377 i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence 10 00 12244555555555555542
Q ss_pred --------------CCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEcc
Q 011653 278 --------------TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343 (480)
Q Consensus 278 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 343 (480)
..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+. ++|+.|+++
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS 534 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence 2234467789999999999999988888999999999999999999977666665 899999999
Q ss_pred CCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 344 ~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
+|++++..|..+ ..|+.+++++|++.|.++.
T Consensus 535 ~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 535 RNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred CCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 999999988765 4789999999999998764
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=338.14 Aligned_cols=134 Identities=28% Similarity=0.375 Sum_probs=68.1
Q ss_pred CCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCC--CCCccccccccCCeeecCCccccccCCc-cccCCCC
Q 011653 236 SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG--TLSFDIGNLKVLLGINLSENNLSGDMPA-TIGGLKS 312 (480)
Q Consensus 236 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~ 312 (480)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344555555555555555555555555555555555555544 2233445555555555555555543332 2444555
Q ss_pred CcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccc
Q 011653 313 LQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 313 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..++.|+.+++++|.++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 55555555555544444332 34555555555555 44444445555555555555555
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-41 Score=334.40 Aligned_cols=348 Identities=22% Similarity=0.248 Sum_probs=304.1
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|.+++..|..|.++++|++|++++|.+.+.++......+++|++|++++|.+++..|..++++++|++|++++|.+++.
T Consensus 39 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred CCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence 47888888999999999999999999998888665444899999999999999988899999999999999999999986
Q ss_pred Cccc--ccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc-ccCcEEEeecccCcc
Q 011653 81 IPDT--IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS-KSLETLGIANCSISG 157 (480)
Q Consensus 81 ~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~n~~~~ 157 (480)
.+.. +..+++|++|++++|.+++.... ..+.++++|++|++++|.+.+..|..+..+. .+|+.|++++|.+.+
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPA----SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCCCC----GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred ccCcccccCcccCCEEECCCCccCccCcc----cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 6555 89999999999999999887311 2388999999999999999988888777642 579999999999886
Q ss_pred cCccc--------ccCCCCCCEEEcccccccccCCcCcCCC---CCCCceecccccccccCC----------ccCC--CC
Q 011653 158 NIPPA--------ISNLSNLLTLVLEGNKLTGPIPTTFGRL---QKLQGLFLAFNKLVGSCP----------DELC--HL 214 (480)
Q Consensus 158 ~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~----------~~~~--~~ 214 (480)
..+.. +..+++|++|++++|.+++..|..+... ++|+.|++++|...+... ..+. ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 44433 3467899999999999998877766543 889999999886554311 1122 23
Q ss_pred CCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeec
Q 011653 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINL 294 (480)
Q Consensus 215 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 294 (480)
++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999999999999999999999999999988999999999999999999999888889999999999999
Q ss_pred CCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCc
Q 011653 295 SENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352 (480)
Q Consensus 295 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 352 (480)
++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999998889999999999999999999997667778999999999999999998877
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-41 Score=344.31 Aligned_cols=173 Identities=23% Similarity=0.276 Sum_probs=114.0
Q ss_pred CCceecccccccccCCccC-CCCCCCCEEEccCccccccCC---ccCCCCCCCCEEEcCCccccccCC--ccccCCCCCC
Q 011653 193 LQGLFLAFNKLVGSCPDEL-CHLDRLDKLVLLGNKFSGSIP---SCLSNLTSLRFLYLGSNRFTSVIP--STFWRLKDIL 266 (480)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~ 266 (480)
|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+| ..++.+++|+.|++++|++++..+ ..+..+++|+
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 333444444433 344333 357888888888888877653 336777888888888888875432 4577788888
Q ss_pred EEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCc
Q 011653 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 267 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 346 (480)
.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++.. ..+++|++|++++|+
T Consensus 391 ~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNK 462 (549)
T ss_dssp EEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC
T ss_pred EEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCc
Confidence 8888888887 56667777788888888888876 3443332 46777777777666432 356667777777776
Q ss_pred ccccCccccccCCCCCEEECccCcccccCC
Q 011653 347 ISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 347 l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
++ .+|. ...++.|+.+++++|++++..|
T Consensus 463 l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred cC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 66 5554 3456667777777776665444
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=338.12 Aligned_cols=356 Identities=23% Similarity=0.289 Sum_probs=255.9
Q ss_pred ccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCccccc
Q 011653 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (480)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 86 (480)
.+|..+. +++++|++++|.+++..+..+. .+++|++|++++|.+++..+..++++++|++|++++|.+++..|..|+
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEECTTTTT-TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccCccChhHhh-CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3555443 5799999999999954455666 899999999999999988788899999999999999999998889999
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccc-cCchhHhhccccCcEEEeecccCcccCcccccC
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG-FLPSSIGNLSKSLETLGIANCSISGNIPPAISN 165 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 165 (480)
++++|++|++++|.+++.+. ..+.++++|++|++++|.+.+ .+|..++.+ ++|++|++++|.+++..+..+..
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTT-----CSCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGGGHH
T ss_pred CccccccccccccccccCCC-----ccccccccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHHccc
Confidence 99999999999999998753 358999999999999999987 579999998 79999999999999887888887
Q ss_pred CCCC----CEEEcccccccccCC---------------------------------------------------------
Q 011653 166 LSNL----LTLVLEGNKLTGPIP--------------------------------------------------------- 184 (480)
Q Consensus 166 l~~L----~~L~l~~n~~~~~~~--------------------------------------------------------- 184 (480)
+++| +.|++++|.+++..|
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 7777 788888776654433
Q ss_pred ------------------------cCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCcc-C----
Q 011653 185 ------------------------TTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSC-L---- 235 (480)
Q Consensus 185 ------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-l---- 235 (480)
..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. +
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~ 328 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLK 328 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCC
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccC
Confidence 33445567777777777766 466666666 7777777776665 33321 1
Q ss_pred ---------------CCCCCCCEEEcCCccccccC--CccccCCCCCCEEecCCCccC----------------------
Q 011653 236 ---------------SNLTSLRFLYLGSNRFTSVI--PSTFWRLKDILFLDFSSNLLV---------------------- 276 (480)
Q Consensus 236 ---------------~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~---------------------- 276 (480)
..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred EEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcc
Confidence 45678888888888776432 444455555555555555544
Q ss_pred -CCCC-ccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCcccc-ccCCccccCCCCCCEEEccCCcccccCcc
Q 011653 277 -GTLS-FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE-GQIPESFDDLTSLEVMNLSNNKISGSIPK 353 (480)
Q Consensus 277 -~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 353 (480)
+..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|.
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence 3333 23445555555555555555555555555666666666666654 34555566666666666666666655555
Q ss_pred ccccCCCCCEEECccCccccc
Q 011653 354 SMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 354 ~l~~~~~L~~l~l~~n~~~~~ 374 (480)
.+..+++|+.+++++|.+++.
T Consensus 489 ~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 489 AFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TTTTCTTCCEEECCSSCCSCC
T ss_pred hhhcccCCCEEeCCCCcCCCC
Confidence 666666666666666666544
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-40 Score=330.92 Aligned_cols=337 Identities=21% Similarity=0.260 Sum_probs=274.7
Q ss_pred cceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccC
Q 011653 19 KIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAY 98 (480)
Q Consensus 19 ~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 98 (480)
++|++++|.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57999999999 8998764 8999999999999977778999999999999999999999899999999999999999
Q ss_pred cccCCCCCcccccccccCCCCCCEEECcCCcccc-cCchhHhhccccCcEEEeecccCcccCcccccCCCCC--CEEEcc
Q 011653 99 NNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG-FLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNL--LTLVLE 175 (480)
Q Consensus 99 n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~ 175 (480)
|.++..| .. .+++|++|++++|.+++ .+|..++.+ ++|++|++++|.+++ ..+..+++| ++|+++
T Consensus 79 N~l~~lp------~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 79 NKLVKIS------CH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp SCCCEEE------CC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred CceeecC------cc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---hhccccccceeeEEEee
Confidence 9998765 33 89999999999999987 578999998 799999999999986 456777888 999999
Q ss_pred cccc--cccCCcCcCC--------------------------CCCCCceeccccc-------ccccCCccCCC-------
Q 011653 176 GNKL--TGPIPTTFGR--------------------------LQKLQGLFLAFNK-------LVGSCPDELCH------- 213 (480)
Q Consensus 176 ~n~~--~~~~~~~~~~--------------------------~~~L~~L~l~~n~-------~~~~~~~~~~~------- 213 (480)
+|.+ .+..|..+.. +++|+.+++++|. +.+.+| .+..
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L 225 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNL 225 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhc
Confidence 9999 6666666554 4455555555553 222221 1111
Q ss_pred --------------------CCCCCEEEccCccccccCCccC-----CCCCCCCEEEcCCccc-----------------
Q 011653 214 --------------------LDRLDKLVLLGNKFSGSIPSCL-----SNLTSLRFLYLGSNRF----------------- 251 (480)
Q Consensus 214 --------------------~~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~~----------------- 251 (480)
+++|++|++++|.++|.+|..+ ..+++|+.++++.|.+
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 2356666677777766777666 5555555555555544
Q ss_pred ---------cccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccc--cCCccccCCCCCcEEeCcC
Q 011653 252 ---------TSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSG--DMPATIGGLKSLQIMDLAY 320 (480)
Q Consensus 252 ---------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~ 320 (480)
.... .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|+.|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 2211 12578999999999999999999999999999999999999996 6677899999999999999
Q ss_pred ccccccCCcc-ccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 321 NRLEGQIPES-FDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 321 n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
|.+++.+|.. +..+++|++|++++|.+++.+|..+. +.|+.+++++|.++ .+|.
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~ 438 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK 438 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence 9999867664 88899999999999999988887764 78999999999998 6664
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=322.62 Aligned_cols=322 Identities=22% Similarity=0.220 Sum_probs=290.1
Q ss_pred cceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccC
Q 011653 19 KIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAY 98 (480)
Q Consensus 19 ~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 98 (480)
+.++.+++.++ .+|..+. ++++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 57888888888 8998764 6899999999999988888999999999999999999999899999999999999999
Q ss_pred cccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEccccc
Q 011653 99 NNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK 178 (480)
Q Consensus 99 n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 178 (480)
|.++..+. ..|.++++|++|++++|.+.+..|..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 90 n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 90 NRLKLIPL-----GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp SCCCSCCT-----TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred CcCCccCc-----ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 99988753 568899999999999999998888888888 789999999999998888899999999999999999
Q ss_pred ccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCcc
Q 011653 179 LTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPST 258 (480)
Q Consensus 179 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~ 258 (480)
+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.|++++|.+++..+..
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 99776677999999999999999999888888999999999999999888888877777779999999999998655567
Q ss_pred ccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCC
Q 011653 259 FWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLE 338 (480)
Q Consensus 259 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 338 (480)
+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 88899999999999999888888888999999999999999988888999999999999999999977777788899999
Q ss_pred EEEccCCccccc
Q 011653 339 VMNLSNNKISGS 350 (480)
Q Consensus 339 ~L~l~~n~l~~~ 350 (480)
.|++++|++...
T Consensus 324 ~L~l~~N~l~c~ 335 (477)
T 2id5_A 324 TLILDSNPLACD 335 (477)
T ss_dssp EEECCSSCEECS
T ss_pred EEEccCCCccCc
Confidence 999999998754
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-39 Score=331.44 Aligned_cols=353 Identities=20% Similarity=0.224 Sum_probs=219.8
Q ss_pred ccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCccccc
Q 011653 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (480)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 86 (480)
.+|+.+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..|.+++++++|++|++++|.+++..|..++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 3444433 5677777777776644455555 667777777777777666666667777777777777777666666666
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCc-hhHhhccccCcEEEeecccCcccCcccccC
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPAISN 165 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 165 (480)
++++|++|++++|.+++.+. +..+.++++|++|++++|.+.+.+| ..+..+ ++|++|++++|.+++..|..+..
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGV----TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTTTT
T ss_pred cCCCCcEEECCCCcccccch----hhhhhccCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChhhhhc
Confidence 67777777777776664310 1456666667777776666444444 355555 56666666666666666655554
Q ss_pred ------------------------CCCCCEEEcccccccccC--Cc-CcCCCCCCCceecccccccccCC----c-----
Q 011653 166 ------------------------LSNLLTLVLEGNKLTGPI--PT-TFGRLQKLQGLFLAFNKLVGSCP----D----- 209 (480)
Q Consensus 166 ------------------------l~~L~~L~l~~n~~~~~~--~~-~~~~~~~L~~L~l~~n~~~~~~~----~----- 209 (480)
+++|++|++++|.+++.. |. ....+++|+.|++++|.+.+..+ .
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 455555555555555421 10 11122223333332222211000 0
Q ss_pred -------------------------cCCC-----------------------------CCCCCEEEccCccccccCCccC
Q 011653 210 -------------------------ELCH-----------------------------LDRLDKLVLLGNKFSGSIPSCL 235 (480)
Q Consensus 210 -------------------------~~~~-----------------------------~~~L~~L~l~~n~l~~~~p~~l 235 (480)
.+.. .++|++|++++|.+. .+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 0001 124445555555543 445444
Q ss_pred -CCCCCCCEEEcCCccccccCC---ccccCCCCCCEEecCCCccCCCCC--ccccccccCCeeecCCccccccCCccccC
Q 011653 236 -SNLTSLRFLYLGSNRFTSVIP---STFWRLKDILFLDFSSNLLVGTLS--FDIGNLKVLLGINLSENNLSGDMPATIGG 309 (480)
Q Consensus 236 -~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 309 (480)
..+++|+.|++++|++.+.+| ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 357888888888888877653 336678888888888888876532 44777888888888888888 67877888
Q ss_pred CCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 310 LKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 310 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
+++|++|++++|+++ .+|..+ .++|++|++++|++++.. ..++.|+.+++++|+++ .+|.
T Consensus 409 ~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 409 PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred cccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence 888888888888887 344433 257888888888888643 46778888888888887 5665
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=316.71 Aligned_cols=326 Identities=23% Similarity=0.218 Sum_probs=296.6
Q ss_pred CcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCE
Q 011653 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 122 (480)
Q Consensus 43 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~ 122 (480)
-+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++.+. ..|.++++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCE
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCCE
Confidence 357888888887 6787664 689999999999999989999999999999999999988732 67999999999
Q ss_pred EECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccc
Q 011653 123 LNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202 (480)
Q Consensus 123 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 202 (480)
|++++|.++...+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 85 L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EECCSSCCCSCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EECCCCcCCccCcccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 9999999996555567777 799999999999998889999999999999999999998889999999999999999999
Q ss_pred ccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCcc
Q 011653 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFD 282 (480)
Q Consensus 203 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 282 (480)
+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+.+..+..
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 99777778999999999999999999888888999999999999999988888877777789999999999999766677
Q ss_pred ccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCC
Q 011653 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLR 362 (480)
Q Consensus 283 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~ 362 (480)
+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 89999999999999999988888899999999999999999998899999999999999999999987777889999999
Q ss_pred EEECccCcccccCCC
Q 011653 363 ELNLSFNELEGEIPS 377 (480)
Q Consensus 363 ~l~l~~n~~~~~~p~ 377 (480)
.+++++|++.+.++.
T Consensus 324 ~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 324 TLILDSNPLACDCRL 338 (477)
T ss_dssp EEECCSSCEECSGGG
T ss_pred EEEccCCCccCccch
Confidence 999999999887653
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-38 Score=321.37 Aligned_cols=355 Identities=21% Similarity=0.228 Sum_probs=242.5
Q ss_pred CccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccC
Q 011653 2 NNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLI 81 (480)
Q Consensus 2 n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 81 (480)
|++++ +|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..|.++.++++|++|++++|.++. +
T Consensus 41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 115 (562)
T 3a79_B 41 RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-I 115 (562)
T ss_dssp SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-E
T ss_pred CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-c
Confidence 34443 554443 5666666666666633333444 56666666666666665555666666666666666666653 3
Q ss_pred cccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccC--cEEEeecccC--cc
Q 011653 82 PDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL--ETLGIANCSI--SG 157 (480)
Q Consensus 82 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L--~~L~l~~n~~--~~ 157 (480)
|.. .+++|++|++++|.+++.+ .+..+.++++|++|++++|.+++. .+..+ ++| ++|++++|.+ ++
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-AHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCC----CCGGGGGCTTCCEEEEECSBCCTT---TTGGG-TTSCEEEEEEEESSCCCCS
T ss_pred Ccc--ccccCCEEECCCCCccccC----chHhhcccCcccEEecCCCccccC---chhhh-hhceeeEEEeecccccccc
Confidence 333 5666666666666665532 114556666666666666665532 22222 233 6666666655 44
Q ss_pred cCcccccCCC----------------------------------------------------------------------
Q 011653 158 NIPPAISNLS---------------------------------------------------------------------- 167 (480)
Q Consensus 158 ~~~~~l~~l~---------------------------------------------------------------------- 167 (480)
..|..+..+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 4444433322
Q ss_pred -----------CCCEEEcccccccccCCcCc-----CCCCC--------------------------CCceecccccccc
Q 011653 168 -----------NLLTLVLEGNKLTGPIPTTF-----GRLQK--------------------------LQGLFLAFNKLVG 205 (480)
Q Consensus 168 -----------~L~~L~l~~n~~~~~~~~~~-----~~~~~--------------------------L~~L~l~~n~~~~ 205 (480)
+|++|++++|.++|.+|..+ ..++. |++|++++|.+..
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 44455555555555555443 22222 3333333333321
Q ss_pred cCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCcccccc--CCccccCCCCCCEEecCCCccCCCCCc-c
Q 011653 206 SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV--IPSTFWRLKDILFLDFSSNLLVGTLSF-D 282 (480)
Q Consensus 206 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~ 282 (480)
.. ....+++|++|++++|.+++.+|..+..+++|+.|++++|++++. +|..+..+++|+.|++++|.+.+.+|. .
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 10 016789999999999999998999999999999999999999873 356788999999999999999985554 4
Q ss_pred ccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccc-cccCCCC
Q 011653 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKS-MEKLFYL 361 (480)
Q Consensus 283 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~~~~L 361 (480)
+..+++|++|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..++.|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 78899999999999999988877664 79999999999999 78887779999999999999999 56665 8899999
Q ss_pred CEEECccCcccccCCC
Q 011653 362 RELNLSFNELEGEIPS 377 (480)
Q Consensus 362 ~~l~l~~n~~~~~~p~ 377 (480)
+.+++++|++.|.+|.
T Consensus 500 ~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCEECCSCCBCCCHHH
T ss_pred CEEEecCCCcCCCcch
Confidence 9999999999998774
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-37 Score=322.41 Aligned_cols=371 Identities=22% Similarity=0.205 Sum_probs=257.4
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
+|+|++..|.+|.++++|++|+|++|.++ .||+..+..+++|++|+|++|.+++..+..|.++++|++|++++|.+++.
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 47788777778888888888888888888 56665444788888888888888866666788888888888888888877
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc---c--------------
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS---K-------------- 143 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~---~-------------- 143 (480)
.+..|+++++|++|++++|.++..+ .+..+.++++|++|++++|.+++..|..+..+. .
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 7777888888888888888887652 116677888888888888888766665544321 0
Q ss_pred ---------cCcEEEeecccCccc--------------------------------------------------------
Q 011653 144 ---------SLETLGIANCSISGN-------------------------------------------------------- 158 (480)
Q Consensus 144 ---------~L~~L~l~~n~~~~~-------------------------------------------------------- 158 (480)
.++.+++.+|.....
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence 111222222110000
Q ss_pred ------------------------CcccccCCCCCCEEEcccccccccCCc-------------------CcCCCCCCCc
Q 011653 159 ------------------------IPPAISNLSNLLTLVLEGNKLTGPIPT-------------------TFGRLQKLQG 195 (480)
Q Consensus 159 ------------------------~~~~l~~l~~L~~L~l~~n~~~~~~~~-------------------~~~~~~~L~~ 195 (480)
....+.....|+.|++.+|.+.+..+. ....+++|+.
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCE
T ss_pred cchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccccc
Confidence 000122334566677666655432221 1235677888
Q ss_pred eecccccccc--cCC-----------------------ccCCCCCCCCEEEccCccccccCC-ccCCCCCCCCEEEcCCc
Q 011653 196 LFLAFNKLVG--SCP-----------------------DELCHLDRLDKLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSN 249 (480)
Q Consensus 196 L~l~~n~~~~--~~~-----------------------~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n 249 (480)
++++.|.+.. ..+ ..+..+++|+.+++..+......+ ..+..+++++.++++.|
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred chhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 8888776642 122 334455666666666655543333 34566777777888887
Q ss_pred cccccCCccccCCCCCCEEecCCCccC-CCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCC
Q 011653 250 RFTSVIPSTFWRLKDILFLDFSSNLLV-GTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 328 (480)
.+.+..+..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 777777777777788888888887643 3466677778888888888888887777778888888888888888887777
Q ss_pred ccccCCCCCCEEEccCCcccccCccccccC-CCCCEEECccCcccccCC
Q 011653 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEKL-FYLRELNLSFNELEGEIP 376 (480)
Q Consensus 329 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~-~~L~~l~l~~n~~~~~~p 376 (480)
..|..+++|++|++++|++++..|..+..+ ++|+.+++++|++.|.+.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 778888888888888888887777777776 578888888888877654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-37 Score=309.84 Aligned_cols=326 Identities=29% Similarity=0.405 Sum_probs=233.3
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
+..+++|++|++++|.+. .+|. +. .+++|++|++++|.+++.. . ++++++|++|++++|.+++..+ +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADIT-P-LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhhhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccCh-h-hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence 566667777777777666 4444 44 5677777777777666432 2 6666777777777776665432 6666777
Q ss_pred CEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCE
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLT 171 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 171 (480)
++|++++|.+++. ..+..+++|++|+++ +.+.+. + .+..+ ++|++|++++|.+++ + +.+..+++|++
T Consensus 137 ~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~-~~~~~~-~-~~~~l-~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 203 (466)
T 1o6v_A 137 NRLELSSNTISDI-------SALSGLTSLQQLSFG-NQVTDL-K-PLANL-TTLERLDISSNKVSD-I-SVLAKLTNLES 203 (466)
T ss_dssp SEEEEEEEEECCC-------GGGTTCTTCSEEEEE-ESCCCC-G-GGTTC-TTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred CEEECCCCccCCC-------hhhccCCcccEeecC-CcccCc-h-hhccC-CCCCEEECcCCcCCC-C-hhhccCCCCCE
Confidence 7777777766654 346666777777765 333322 2 25565 678888888887764 2 34777888888
Q ss_pred EEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccc
Q 011653 172 LVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRF 251 (480)
Q Consensus 172 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 251 (480)
|++++|.+++..| ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 8888888776544 66788888888888887643 456778888888888888875544 67788888888888888
Q ss_pred cccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccc
Q 011653 252 TSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESF 331 (480)
Q Consensus 252 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 331 (480)
.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 349 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL 349 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh
Confidence 76433 7778888888888888876544 6778888888888888886554 67788888888888888754 467
Q ss_pred cCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccc
Q 011653 332 DDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 332 ~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
..+++|+.|++++|++++..| +..++.|+.+++++|++++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 788888888888888887766 7788888888888888876
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-37 Score=306.90 Aligned_cols=336 Identities=19% Similarity=0.213 Sum_probs=282.0
Q ss_pred cccccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcc
Q 011653 4 LVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPD 83 (480)
Q Consensus 4 ~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 83 (480)
..+..+.++.++++|++|++++|.++ .+| .+. .+++|++|++++|.+++ +| ++++++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred cCcccccChhHcCCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e-
Confidence 45566778999999999999999999 567 566 79999999999999986 44 88999999999999999975 3
Q ss_pred cccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccc
Q 011653 84 TIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAI 163 (480)
Q Consensus 84 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l 163 (480)
++.+++|++|++++|.+++.+ +.++++|++|++++|.+++. + ++.+ ++|++|++++|...+.+ .+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~--------~~~l~~L~~L~l~~N~l~~l-~--l~~l-~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD--------VSQNPLLTYLNCARNTLTEI-D--VSHN-TQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--------CTTCTTCCEEECTTSCCSCC-C--CTTC-TTCCEEECTTCSCCCCC--CC
T ss_pred -cCCCCcCCEEECCCCcCCeec--------CCCCCcCCEEECCCCcccee-c--cccC-CcCCEEECCCCCccccc--cc
Confidence 889999999999999998752 78899999999999999973 3 6676 78999999999766566 47
Q ss_pred cCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCE
Q 011653 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRF 243 (480)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 243 (480)
..+++|++|++++|.+++ +| ++.+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 889999999999999997 44 88999999999999999875 48889999999999999997 66 789999999
Q ss_pred EEcCCccccccCCccccCCC-------CCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCc--------ccc
Q 011653 244 LYLGSNRFTSVIPSTFWRLK-------DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA--------TIG 308 (480)
Q Consensus 244 L~l~~n~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~ 308 (480)
|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+.
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 99999999987655555444 55667777777766665 46789999999999988776664 256
Q ss_pred CCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccc-------------cCCCCCEEECccCcccccC
Q 011653 309 GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSME-------------KLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 309 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-------------~~~~L~~l~l~~n~~~~~~ 375 (480)
.+++|+.|++++|++++ ++ ++.+++|+.|++++|++++ ++ .+. .+..|..++++.|.++|.+
T Consensus 316 ~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp TCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-CT-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred hcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-cc-ccccccccCCcEEecceeeecCccccccCcEEEEc
Confidence 77899999999999997 33 8899999999999999986 22 111 2245778899999999999
Q ss_pred CCC
Q 011653 376 PSG 378 (480)
Q Consensus 376 p~~ 378 (480)
|..
T Consensus 391 p~~ 393 (457)
T 3bz5_A 391 SPD 393 (457)
T ss_dssp CTT
T ss_pred Chh
Confidence 864
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-37 Score=302.68 Aligned_cols=325 Identities=24% Similarity=0.316 Sum_probs=173.7
Q ss_pred CCccccccchhhhcCccccceecccccccccCchhhhcCCCCC-------------cEEEcccCcceecCCcccccCCCC
Q 011653 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTV-------------EHLNLALNRFSGTIPSSITNASKL 67 (480)
Q Consensus 1 ~n~~~g~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~~~~~~~L 67 (480)
+|++ |.+|++++++++|++|++++|.+.|.+|..++ .+++| ++|++++|.+++ +|.. .++|
T Consensus 20 ~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L 93 (454)
T 1jl5_A 20 SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHL 93 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTC
T ss_pred cCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCC
Confidence 3677 89999999999999999999999999999887 66654 888888888874 4442 3577
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcE
Q 011653 68 TLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLET 147 (480)
Q Consensus 68 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 147 (480)
++|++++|.+++ +|.. +++|+.|++++|.+++.+. + .++|++|++++|.+++ +| .++.+ ++|++
T Consensus 94 ~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-------~--~~~L~~L~L~~n~l~~-lp-~~~~l-~~L~~ 157 (454)
T 1jl5_A 94 ESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-------L--PPLLEYLGVSNNQLEK-LP-ELQNS-SFLKI 157 (454)
T ss_dssp SEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-------C--CTTCCEEECCSSCCSS-CC-CCTTC-TTCCE
T ss_pred CEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-------C--CCCCCEEECcCCCCCC-Cc-ccCCC-CCCCE
Confidence 888888887776 4542 3566666666666655421 0 1355555555555553 44 34444 45555
Q ss_pred EEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccc
Q 011653 148 LGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKF 227 (480)
Q Consensus 148 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 227 (480)
|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++++|.+
T Consensus 158 L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred EECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC
Confidence 5555555553 33322 355555555555553 33 34555555555555555543 2221 13444555555544
Q ss_pred cccCCccCCCCCCCCEEEcCCccccccCCccc-----------------cCCCCCCEEecCCCccCCCCCccccccccCC
Q 011653 228 SGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTF-----------------WRLKDILFLDFSSNLLVGTLSFDIGNLKVLL 290 (480)
Q Consensus 228 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 290 (480)
. .+|. +..+++|+.|++++|++++ +|..+ ..+++|+.|++++|.+++.. . ..++|+
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~-~---~~~~L~ 300 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS-E---LPPNLY 300 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEES-C---CCTTCC
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCccc-C---cCCcCC
Confidence 4 3342 4444445555555444443 22211 01134445555555444310 0 013444
Q ss_pred eeecCCccccccCCccccCC-CCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccC
Q 011653 291 GINLSENNLSGDMPATIGGL-KSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369 (480)
Q Consensus 291 ~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n 369 (480)
+|++++|.+++ ++ .+ ++|+.|++++|++++ +|.. +++|++|++++|.++ .+|. .+++|+.+++++|
T Consensus 301 ~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 301 YLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred EEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 44444444442 11 22 467777777777774 5543 467777777777777 4555 3567777777777
Q ss_pred cccc--cCCC
Q 011653 370 ELEG--EIPS 377 (480)
Q Consensus 370 ~~~~--~~p~ 377 (480)
++++ .+|.
T Consensus 368 ~l~~l~~ip~ 377 (454)
T 1jl5_A 368 PLREFPDIPE 377 (454)
T ss_dssp CCSSCCCCCT
T ss_pred CCCcCCCChH
Confidence 7777 5554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-36 Score=301.45 Aligned_cols=328 Identities=25% Similarity=0.403 Sum_probs=284.7
Q ss_pred hcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCC
Q 011653 13 FNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92 (480)
Q Consensus 13 ~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 92 (480)
..+++|+.|+++++.+. .+|. +. .+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ ++++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 45788999999999998 7875 55 799999999999999854 44 9999999999999999997655 99999999
Q ss_pred EEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEE
Q 011653 93 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTL 172 (480)
Q Consensus 93 ~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 172 (480)
+|++++|.+++.+ .+.++++|++|++++|.+.+ ++ .+..+ ++|++|+++ +.+.+ ++ .+..+++|++|
T Consensus 116 ~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~-~~-~~~~l-~~L~~L~l~-~~~~~-~~-~~~~l~~L~~L 182 (466)
T 1o6v_A 116 GLTLFNNQITDID-------PLKNLTNLNRLELSSNTISD-IS-ALSGL-TSLQQLSFG-NQVTD-LK-PLANLTTLERL 182 (466)
T ss_dssp EEECCSSCCCCCG-------GGTTCTTCSEEEEEEEEECC-CG-GGTTC-TTCSEEEEE-ESCCC-CG-GGTTCTTCCEE
T ss_pred EEECCCCCCCCCh-------HHcCCCCCCEEECCCCccCC-Ch-hhccC-CcccEeecC-CcccC-ch-hhccCCCCCEE
Confidence 9999999998764 38899999999999999885 44 47777 789999997 45543 33 38899999999
Q ss_pred EcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCcccc
Q 011653 173 VLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFT 252 (480)
Q Consensus 173 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 252 (480)
++++|.+++. ..+..+++|++|++++|.+.+..| +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 9999999854 348899999999999999987655 77899999999999998853 46788999999999999998
Q ss_pred ccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCcccc
Q 011653 253 SVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFD 332 (480)
Q Consensus 253 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 332 (480)
+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +.
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 7654 8899999999999999987655 7889999999999999986444 7899999999999999997665 78
Q ss_pred CCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 333 DLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 333 ~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
.+++|+.|++++|.+++. ..+..++.|+.+++++|++++..|
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 899999999999999965 468899999999999999998776
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-35 Score=304.12 Aligned_cols=362 Identities=24% Similarity=0.246 Sum_probs=284.6
Q ss_pred ccchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCccccc
Q 011653 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (480)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 86 (480)
.+|+.+. +++++|||++|.++ .+|+..+..+++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 3454332 47899999999999 67654333899999999999999977778899999999999999999988888899
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccc-cCchhHhhccccCcEEEeecccCcccCcccccC
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG-FLPSSIGNLSKSLETLGIANCSISGNIPPAISN 165 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 165 (480)
++++|++|++++|++++.+. ..|+++++|++|++++|.+.. .+|..++.+ ++|++|++++|.+++..+..+..
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~-----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTT-----CCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHH
T ss_pred CCCCCCEEECCCCcCCCCCh-----hhhhcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccccccc
Confidence 99999999999999998853 568999999999999999975 467888887 78999999999998776665543
Q ss_pred CCCCC----EEEcccccccccCC---------------------------------------------------------
Q 011653 166 LSNLL----TLVLEGNKLTGPIP--------------------------------------------------------- 184 (480)
Q Consensus 166 l~~L~----~L~l~~n~~~~~~~--------------------------------------------------------- 184 (480)
+.+++ .++++.|.++...+
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 33221 23333322211000
Q ss_pred ----------------------------------------------cCcCCCCCCCceecccccccccCCc---------
Q 011653 185 ----------------------------------------------TTFGRLQKLQGLFLAFNKLVGSCPD--------- 209 (480)
Q Consensus 185 ----------------------------------------------~~~~~~~~L~~L~l~~n~~~~~~~~--------- 209 (480)
..+..+..++.|++.+|.+.+..+.
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 0112334566777777765433221
Q ss_pred ----------cCCCCCCCCEEEccCccccc--c-----------------------CCccCCCCCCCCEEEcCCcccccc
Q 011653 210 ----------ELCHLDRLDKLVLLGNKFSG--S-----------------------IPSCLSNLTSLRFLYLGSNRFTSV 254 (480)
Q Consensus 210 ----------~~~~~~~L~~L~l~~n~l~~--~-----------------------~p~~l~~l~~L~~L~l~~n~~~~~ 254 (480)
....+++|+.+++++|.+.. . .+..+..+++|+.+++..++....
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 22346788889888887642 1 233455667777777777766544
Q ss_pred CC-ccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcccc-ccCCccccCCCCCcEEeCcCccccccCCcccc
Q 011653 255 IP-STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS-GDMPATIGGLKSLQIMDLAYNRLEGQIPESFD 332 (480)
Q Consensus 255 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 332 (480)
.+ ..+..+++++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..+..+++|+.|+|++|++++..|..|.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 33 45678889999999999999888888999999999999999754 46788899999999999999999998999999
Q ss_pred CCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 333 DLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 333 ~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
.+++|++|+|++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 999999999999999988888999999999999999999987664
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-35 Score=283.05 Aligned_cols=305 Identities=24% Similarity=0.383 Sum_probs=222.2
Q ss_pred CCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCC
Q 011653 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 118 (480)
.+++|+.|+++++.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. +.+.+++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-------~~~~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-------SALQNLT 110 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-------GGGTTCT
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-------hHHcCCC
Confidence 4677777777777776 344 36777777777777777765433 77777777777777777654 3467777
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceec
Q 011653 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFL 198 (480)
Q Consensus 119 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 198 (480)
+|++|++++|.+.+. +. +..+ ++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~~-~~-~~~l-~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDI-SP-LANL-TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCCC-GG-GTTC-TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred cCCEEECcCCcccCc-hh-hccC-CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 777777777777643 33 5555 577777777775553433 37777788888888777764433 677778888888
Q ss_pred ccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCC
Q 011653 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278 (480)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 278 (480)
++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 8877764332 6677788888888887764433 6777888888888888775433 77788888888888887754
Q ss_pred CCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccC
Q 011653 279 LSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL 358 (480)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~ 358 (480)
..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..| +..+
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l 332 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence 3577788888888888888753 357788888899998888888788888888889999999988886655 7788
Q ss_pred CCCCEEECccCccc
Q 011653 359 FYLRELNLSFNELE 372 (480)
Q Consensus 359 ~~L~~l~l~~n~~~ 372 (480)
+.|+.+++++|+++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 88899999888875
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-35 Score=282.26 Aligned_cols=308 Identities=27% Similarity=0.412 Sum_probs=266.7
Q ss_pred hhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCC
Q 011653 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (480)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 90 (480)
.+..+++|++|+++++.+. .+|. +. .+++|++|++++|.+++ ++. +.++++|++|++++|.+++. +.+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 3567899999999999998 7775 55 79999999999999984 454 99999999999999999864 45899999
Q ss_pred CCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 170 (480)
|++|++++|.+++.+ .+..+++|++|++++|.....++. +..+ ++|++|++++|.+.+..+ +..+++|+
T Consensus 112 L~~L~l~~n~i~~~~-------~~~~l~~L~~L~l~~n~~~~~~~~-~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 112 LRELYLNEDNISDIS-------PLANLTKMYSLNLGANHNLSDLSP-LSNM-TGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp CSEEECTTSCCCCCG-------GGTTCTTCCEEECTTCTTCCCCGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred CCEEECcCCcccCch-------hhccCCceeEEECCCCCCcccccc-hhhC-CCCcEEEecCCCcCCchh--hccCCCCC
Confidence 999999999998764 388999999999999976655544 7777 789999999999885433 88999999
Q ss_pred EEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCcc
Q 011653 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250 (480)
Q Consensus 171 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 250 (480)
+|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 99999999985433 8899999999999999986544 7889999999999999985443 8899999999999999
Q ss_pred ccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCcc
Q 011653 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330 (480)
Q Consensus 251 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 330 (480)
+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+..++.+++|+.|++++|++++..|
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 9864 5688999999999999999875 457889999999999999998888999999999999999999997665
Q ss_pred ccCCCCCCEEEccCCccc
Q 011653 331 FDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 331 ~~~l~~L~~L~l~~n~l~ 348 (480)
+..+++|++|++++|.++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 888999999999999875
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-35 Score=288.37 Aligned_cols=311 Identities=18% Similarity=0.202 Sum_probs=248.1
Q ss_pred CCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCC
Q 011653 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 118 (480)
.+++++.++++++.++...+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++.+. ..+.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCC
Confidence 46788888888888774433446778888888888888887777778888888888888888877642 5577888
Q ss_pred CCCEEECcCCcccccCchh-HhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCcee
Q 011653 119 KLRSLNFIGNPLDGFLPSS-IGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLF 197 (480)
Q Consensus 119 ~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 197 (480)
+|++|++++|.++ .+|.. +..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|+
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred CCCEEECCCCccC-cCCHHHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 8888888888887 44544 4565 6788888888888877777788888888888888888754 356778888888
Q ss_pred cccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCC
Q 011653 198 LAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277 (480)
Q Consensus 198 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 277 (480)
+++|.+.+. ...++|++|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 193 l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred ccccccccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 888877642 2346788999999888744 33 2347899999999998864 578888999999999999998
Q ss_pred CCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCcccccc
Q 011653 278 TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEK 357 (480)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 357 (480)
..|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++.. | +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence 888889999999999999999984 5666778899999999999998 5777788889999999999999844 3 667
Q ss_pred CCCCCEEECccCccccc
Q 011653 358 LFYLRELNLSFNELEGE 374 (480)
Q Consensus 358 ~~~L~~l~l~~n~~~~~ 374 (480)
++.|+.+++++|++.+.
T Consensus 338 ~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred hccCCEEEcCCCCccch
Confidence 88999999999999875
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-35 Score=285.14 Aligned_cols=312 Identities=21% Similarity=0.216 Sum_probs=272.4
Q ss_pred cCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCE
Q 011653 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (480)
Q Consensus 14 ~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 93 (480)
.+++++.|+++++.+. .+|..+...+++|++|++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 5689999999999988 888876558999999999999999877789999999999999999999988888999999999
Q ss_pred EeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEE
Q 011653 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (480)
Q Consensus 94 L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 173 (480)
|++++|.++..+. ..+.++++|++|++++|.+.+..|..+..+ ++|++|++++|.+++. .+..+++|+.|+
T Consensus 122 L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 122 LVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp EECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred EECCCCccCcCCH-----HHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCcc---ccccccccceee
Confidence 9999999997763 446899999999999999998777778887 7899999999999854 366789999999
Q ss_pred cccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccc
Q 011653 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (480)
Q Consensus 174 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 253 (480)
+++|.+++. ...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 193 l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred ccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 999988742 3446899999999998755 332 357899999999999854 578899999999999999999
Q ss_pred cCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccC
Q 011653 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (480)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 333 (480)
..|..+..+++|+.|++++|.+.+ ++..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++. + +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence 889999999999999999999986 4555678899999999999998 6777788899999999999999853 3 678
Q ss_pred CCCCCEEEccCCccccc
Q 011653 334 LTSLEVMNLSNNKISGS 350 (480)
Q Consensus 334 l~~L~~L~l~~n~l~~~ 350 (480)
+++|+.|++++|++...
T Consensus 338 ~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred hccCCEEEcCCCCccch
Confidence 89999999999999864
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.9e-35 Score=288.34 Aligned_cols=320 Identities=21% Similarity=0.201 Sum_probs=272.3
Q ss_pred cccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEec
Q 011653 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (480)
Q Consensus 17 ~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 96 (480)
+++......+...+..+..+. .+++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++.+++|++|++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~L 92 (457)
T 3bz5_A 19 NFASEVAAAFEMQATDTISEE-QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLAC 92 (457)
T ss_dssp HHHHHHHHHTTCCTTSEEEHH-HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEEC
T ss_pred HHHHHHHHhcCcCcccccChh-HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEEC
Confidence 444444445555555666777 79999999999999996 45 799999999999999999975 3 889999999999
Q ss_pred cCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEccc
Q 011653 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (480)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 176 (480)
++|.+++.+ +.++++|++|++++|.+++ +| ++.+ ++|++|++++|.+++ ++ ++.+++|++|++++
T Consensus 93 s~N~l~~~~--------~~~l~~L~~L~L~~N~l~~-l~--~~~l-~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 93 DSNKLTNLD--------VTPLTKLTYLNCDTNKLTK-LD--VSQN-PLLTYLNCARNTLTE-ID--VSHNTQLTELDCHL 157 (457)
T ss_dssp CSSCCSCCC--------CTTCTTCCEEECCSSCCSC-CC--CTTC-TTCCEEECTTSCCSC-CC--CTTCTTCCEEECTT
T ss_pred cCCCCceee--------cCCCCcCCEEECCCCcCCe-ec--CCCC-CcCCEEECCCCccce-ec--cccCCcCCEEECCC
Confidence 999998752 7889999999999999996 45 6777 789999999999997 33 88999999999999
Q ss_pred ccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCC
Q 011653 177 NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256 (480)
Q Consensus 177 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 256 (480)
|...+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .+..+++|+.|++++|++++ +|
T Consensus 158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 158 NKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred CCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 9766666 47899999999999999987 44 88999999999999999865 38899999999999999998 55
Q ss_pred ccccCCCCCCEEecCCCccCCCCCccccccc-------cCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCc
Q 011653 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLK-------VLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPE 329 (480)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 329 (480)
+..+++|+.|++++|.+++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred --ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 78899999999999999987665555554 56778888888777777 47889999999999987776664
Q ss_pred --------cccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccc
Q 011653 330 --------SFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 330 --------~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
.++.+++|++|++++|++++. + +..++.|+.+++++|.+++
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 356678999999999999984 3 8899999999999999987
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-35 Score=302.21 Aligned_cols=313 Identities=18% Similarity=0.188 Sum_probs=233.9
Q ss_pred CCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCC
Q 011653 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 118 (480)
.+.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|+.|++++|.+++.+. ..|.+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCC
Confidence 35777888888877775444456777888888888888877777777888888888888888777642 4567778
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceec
Q 011653 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFL 198 (480)
Q Consensus 119 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 198 (480)
+|++|++++|.+++..+..+..+ ++|++|++++|.+++..|..+..+++|++|++++|.+++. .++.+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 88888888887774433345666 6788888888888777777778888888888888887754 2456777888888
Q ss_pred ccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCC
Q 011653 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278 (480)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 278 (480)
++|.+.+. ...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+.
T Consensus 200 ~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 200 SYNLLSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred ccCccccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence 88777642 3345788888888887643322 2 2578888888888876 36677888888888888888888
Q ss_pred CCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccC
Q 011653 279 LSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL 358 (480)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~ 358 (480)
.|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. | +..+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhc
Confidence 88888888888888888888874 5666677888888888888887 5777777888888888888888754 2 5667
Q ss_pred CCCCEEECccCcccccC
Q 011653 359 FYLRELNLSFNELEGEI 375 (480)
Q Consensus 359 ~~L~~l~l~~n~~~~~~ 375 (480)
+.|+.+++++|++.|..
T Consensus 345 ~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCSEEECCSSCEEHHH
T ss_pred CCCCEEEeeCCCCCChh
Confidence 78888888888887653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-35 Score=299.31 Aligned_cols=313 Identities=21% Similarity=0.214 Sum_probs=277.2
Q ss_pred cCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCE
Q 011653 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (480)
Q Consensus 14 ~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 93 (480)
.+++++.+++++|.+. .+|..+...+++|+.|++++|.+++..|..++++++|++|+|++|.+++..|..|+.+++|+.
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4688999999999998 788876658999999999999999888889999999999999999999998888999999999
Q ss_pred EeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEE
Q 011653 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (480)
Q Consensus 94 L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 173 (480)
|++++|.+++.|. ..|.++++|++|++++|.+++..|..+..+ ++|++|++++|.+++. .+..+++|+.|+
T Consensus 128 L~L~~n~l~~l~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~---~~~~l~~L~~L~ 198 (597)
T 3oja_B 128 LVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHAN 198 (597)
T ss_dssp EECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBC---CGGGCTTCSEEE
T ss_pred EEeeCCCCCCCCH-----HHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCc---Chhhhhhhhhhh
Confidence 9999999998763 457899999999999999998888889888 7899999999999864 256789999999
Q ss_pred cccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccc
Q 011653 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (480)
Q Consensus 174 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 253 (480)
+++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred cccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 99998875 334568999999999987544332 3689999999999986 4678999999999999999999
Q ss_pred cCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccC
Q 011653 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (480)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 333 (480)
..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. | +..
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~ 343 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 343 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence 999999999999999999999986 4666678999999999999999 6888889999999999999999854 3 677
Q ss_pred CCCCCEEEccCCcccccC
Q 011653 334 LTSLEVMNLSNNKISGSI 351 (480)
Q Consensus 334 l~~L~~L~l~~n~l~~~~ 351 (480)
+++|+.|++++|++.+..
T Consensus 344 ~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCCCSEEECCSSCEEHHH
T ss_pred cCCCCEEEeeCCCCCChh
Confidence 899999999999998643
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.6e-36 Score=280.16 Aligned_cols=252 Identities=31% Similarity=0.483 Sum_probs=207.6
Q ss_pred CCCCEEECcCCcccc--cCchhHhhccccCcEEEeec-ccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCC
Q 011653 118 KKLRSLNFIGNPLDG--FLPSSIGNLSKSLETLGIAN-CSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQ 194 (480)
Q Consensus 118 ~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 194 (480)
.+++.|++++|.+.+ .+|..+..+ ++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777777 777777777 6788888884 777777787888888888888888888777787788888888
Q ss_pred ceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCC-CCCEEEcCCccccccCCccccCCCCCCEEecCCC
Q 011653 195 GLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLT-SLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSN 273 (480)
Q Consensus 195 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 273 (480)
+|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888877888888888888888888888878888888777 888888888888888888887776 888888888
Q ss_pred ccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCcc
Q 011653 274 LLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353 (480)
Q Consensus 274 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 353 (480)
.+.+..+..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 88888888888888888888888888866665 77888999999999999888899999999999999999999988887
Q ss_pred ccccCCCCCEEECccCcccc
Q 011653 354 SMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 354 ~l~~~~~L~~l~l~~n~~~~ 373 (480)
. ..++.|+.+++++|+..+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEE
T ss_pred C-ccccccChHHhcCCCCcc
Confidence 6 778889999999998433
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-34 Score=285.86 Aligned_cols=321 Identities=26% Similarity=0.330 Sum_probs=235.0
Q ss_pred hhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCC-------------CEEeccCCc
Q 011653 10 ATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKL-------------TLLELGGNT 76 (480)
Q Consensus 10 ~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~n~ 76 (480)
+.-.+.++|++|++++|.+ |.+|+.++ ++++|++|++++|.+.|.+|.+++++++| ++|++++|.
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccccccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 3444568999999999999 79999998 89999999999999999999999988764 999999999
Q ss_pred ccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCc
Q 011653 77 FSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS 156 (480)
Q Consensus 77 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~ 156 (480)
+++. |.. .++|++|++++|.+++.| .. +++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 83 l~~l-p~~---~~~L~~L~l~~n~l~~lp------~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 83 LSSL-PEL---PPHLESLVASCNSLTELP------EL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSCC-CSC---CTTCSEEECCSSCCSSCC------CC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCS
T ss_pred cccC-CCC---cCCCCEEEccCCcCCccc------cc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCC
Confidence 9864 432 478999999999999875 22 3789999999999985 332 2268999999999999
Q ss_pred ccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCC
Q 011653 157 GNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLS 236 (480)
Q Consensus 157 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~ 236 (480)
+ +| .++.+++|++|++++|.+++ +|..+ ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 6 77 59999999999999999986 56543 599999999999987 56 68999999999999999985 5543
Q ss_pred CCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEE
Q 011653 237 NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIM 316 (480)
Q Consensus 237 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 316 (480)
.++|+.|++++|.++ .+| .+..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++ +|.. +++|+.|
T Consensus 214 -~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred -cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 258999999999998 567 48899999999999999986 333 23778888888888874 5543 2567777
Q ss_pred eCcCccccc--cCCccc-------------cCC-CCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCCC
Q 011653 317 DLAYNRLEG--QIPESF-------------DDL-TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (480)
Q Consensus 317 ~l~~n~l~~--~~p~~~-------------~~l-~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p~ 377 (480)
++++|++++ .+|..+ ..+ ++|++|++++|++++ +|.. ++.|+.+++++|.++ .+|.
T Consensus 283 ~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~ 354 (454)
T 1jl5_A 283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE 354 (454)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred ECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc
Confidence 777776665 222221 122 578999999999885 6654 578999999999998 4665
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-35 Score=274.70 Aligned_cols=251 Identities=31% Similarity=0.409 Sum_probs=227.7
Q ss_pred CCCcEEEcccCccee--cCCcccccCCCCCEEeccC-CcccccCcccccCCCCCCEEeccCcccCCC-CCcccccccccC
Q 011653 41 PTVEHLNLALNRFSG--TIPSSITNASKLTLLELGG-NTFSGLIPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSSLAN 116 (480)
Q Consensus 41 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~ 116 (480)
.+++.|++++|.+++ .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+++. | ..+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p------~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------DFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------GGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC------HHHhC
Confidence 689999999999998 8999999999999999995 889988999999999999999999998854 4 67889
Q ss_pred CCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCC-CCCEEEcccccccccCCcCcCCCCCCCc
Q 011653 117 CKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLS-NLLTLVLEGNKLTGPIPTTFGRLQKLQG 195 (480)
Q Consensus 117 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 195 (480)
+++|++|++++|.+++.+|..+..+ ++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 9999999999999998999999888 7899999999999989999999998 999999999999999999998887 999
Q ss_pred eecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCcc
Q 011653 196 LFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLL 275 (480)
Q Consensus 196 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 275 (480)
|++++|.+.+..|..+..+++|++|++++|.+++.+|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|.+
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999999998999999999999999999999877665 78889999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCeeecCCcc-ccc
Q 011653 276 VGTLSFDIGNLKVLLGINLSENN-LSG 301 (480)
Q Consensus 276 ~~~~~~~~~~~~~L~~L~l~~n~-l~~ 301 (480)
+|.+|.. ..+++|+.+++++|. +.|
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccCCCC-ccccccChHHhcCCCCccC
Confidence 9988876 889999999999997 443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.2e-34 Score=268.76 Aligned_cols=287 Identities=25% Similarity=0.271 Sum_probs=158.3
Q ss_pred CCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCC
Q 011653 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLR 121 (480)
Q Consensus 42 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~ 121 (480)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++.+. ..+.++++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-----GGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-----hHhhCcCCCC
Confidence 5666666666665 5555442 466666666666666555566666666666666666655411 4566666666
Q ss_pred EEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEccccccc--ccCCcCcCCCCCCCceecc
Q 011653 122 SLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLT--GPIPTTFGRLQKLQGLFLA 199 (480)
Q Consensus 122 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~ 199 (480)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+ +|++|+++
T Consensus 106 ~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 6666666665 4444332 35666666666666444445666667777777776664 2445555555 66666666
Q ss_pred cccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCC
Q 011653 200 FNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (480)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (480)
+|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 666653 343332 45555666666555555455555555555666555555544445555555555555555554 34
Q ss_pred CccccccccCCeeecCCccccccCCccccC------CCCCcEEeCcCcccc--ccCCccccCCCCCCEEEccCC
Q 011653 280 SFDIGNLKVLLGINLSENNLSGDMPATIGG------LKSLQIMDLAYNRLE--GQIPESFDDLTSLEVMNLSNN 345 (480)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l~~n 345 (480)
|..+..+++|++|++++|.+++..+..+.. ...|+.|++++|++. +..|..+..+++|+.+++++|
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 444555555555555555555433333332 133444555554443 233344444444444444444
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-33 Score=268.16 Aligned_cols=298 Identities=23% Similarity=0.270 Sum_probs=254.2
Q ss_pred ccchhhhc-C-----ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc
Q 011653 7 MVSATIFN-M-----STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (480)
Q Consensus 7 ~~~~~~~~-~-----~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 80 (480)
.+|+.+.. | .+++.++++++.+. .+|..+. ++|+.|++++|.+++..|..+.++++|++|++++|.+++.
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc
Confidence 45655443 3 27999999999998 8998764 7999999999999987788999999999999999999999
Q ss_pred CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCc--cc
Q 011653 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS--GN 158 (480)
Q Consensus 81 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~--~~ 158 (480)
.|..++++++|++|++++|.++..| ..+. ++|++|++++|.+....+..+..+ ++|++|++++|.++ +.
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~~l~------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLVEIP------PNLP--SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCCSCC------SSCC--TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGS
T ss_pred CHhHhhCcCCCCEEECCCCcCCccC------cccc--ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCC
Confidence 8999999999999999999998776 3333 799999999999996666667777 79999999999996 36
Q ss_pred CcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCC
Q 011653 159 IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNL 238 (480)
Q Consensus 159 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l 238 (480)
.+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 77778887 99999999999985 565543 799999999999998888999999999999999999998888889999
Q ss_pred CCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccc------cccCCeeecCCcccc--ccCCccccCC
Q 011653 239 TSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGN------LKVLLGINLSENNLS--GDMPATIGGL 310 (480)
Q Consensus 239 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~~ 310 (480)
++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..+.. ...|+.|++++|.+. +..|.++..+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 99999999999998 68888999999999999999999877766654 367899999999987 5677889999
Q ss_pred CCCcEEeCcCcc
Q 011653 311 KSLQIMDLAYNR 322 (480)
Q Consensus 311 ~~L~~L~l~~n~ 322 (480)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 999999999885
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.3e-33 Score=264.80 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=152.1
Q ss_pred CCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCC
Q 011653 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLR 121 (480)
Q Consensus 42 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~ 121 (480)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++... ..+.++++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCTTCC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-----HHhcCCCCCC
Confidence 3444444444443 3333322 344444444444444444444444444444444444444310 3344444444
Q ss_pred EEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEccccccc--ccCCcCcCCCCCCCceecc
Q 011653 122 SLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLT--GPIPTTFGRLQKLQGLFLA 199 (480)
Q Consensus 122 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~ 199 (480)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+. +..+..+..+++|++|+++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 4444444444 3333222 34555555555554444444455555555555555543 2334445555555555555
Q ss_pred cccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCC
Q 011653 200 FNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (480)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (480)
+|.++. +|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+. .+
T Consensus 180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 555542 333222 55666666666665555555666666666666666666555555666666666666666665 45
Q ss_pred CccccccccCCeeecCCccccccCCccccC------CCCCcEEeCcCccccc--cCCccccCCCCCCEEEccCCc
Q 011653 280 SFDIGNLKVLLGINLSENNLSGDMPATIGG------LKSLQIMDLAYNRLEG--QIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~ 346 (480)
|..+..+++|++|++++|.+++..+..|.. .+.|+.+++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 555666666666666666666544444432 3567788888887753 345677778888888888774
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1e-32 Score=261.36 Aligned_cols=288 Identities=20% Similarity=0.281 Sum_probs=127.3
Q ss_pred CCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccC
Q 011653 66 KLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL 145 (480)
Q Consensus 66 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L 145 (480)
+++.++++++.++. +|..+. ++|+.|++++|.+++.+. ..+.++++|++|++++|.+++..|..+..+ ++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKD-----GDFKNLKNLHTLILINNKISKISPGAFAPL-VKL 102 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeCh-----hhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCC
Confidence 34444444444442 232221 344445554444444421 234444445555555444444444444444 345
Q ss_pred cEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccc--cCCccCCCCCCCCEEEcc
Q 011653 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG--SCPDELCHLDRLDKLVLL 223 (480)
Q Consensus 146 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~ 223 (480)
++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|+++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 55555444444 3333332 344455555444444433444444455555554444432 333444444445555554
Q ss_pred CccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccC
Q 011653 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 224 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
+|.++ .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 44444 2333222 44445555554444444444444444555555554444444444444444555555554444 44
Q ss_pred CccccCCCCCcEEeCcCccccccCCccccC------CCCCCEEEccCCcccc--cCccccccCCCCCEEECccC
Q 011653 304 PATIGGLKSLQIMDLAYNRLEGQIPESFDD------LTSLEVMNLSNNKISG--SIPKSMEKLFYLRELNLSFN 369 (480)
Q Consensus 304 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~------l~~L~~L~l~~n~l~~--~~p~~l~~~~~L~~l~l~~n 369 (480)
|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++.. ..|..+..+..++.+++++|
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 444444444555555555444333333321 1344444454444431 23334444444444444444
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.4e-36 Score=301.77 Aligned_cols=358 Identities=18% Similarity=0.153 Sum_probs=271.6
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCccee----cCCcccccCCCCCEEeccCCcccccCccccc-CCC-
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSG----TIPSSITNASKLTLLELGGNTFSGLIPDTIG-NLR- 89 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~- 89 (480)
++|++|++++|.++......+...+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5788999999988744334433378999999999999874 4567778889999999999988765444333 344
Q ss_pred ---CCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhc----cccCcEEEeecccCccc----
Q 011653 90 ---NLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNL----SKSLETLGIANCSISGN---- 158 (480)
Q Consensus 90 ---~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~----~~~L~~L~l~~n~~~~~---- 158 (480)
+|++|++++|.++... ...++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHH-HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 6999999999887421 00122678889999999999999886655555432 24699999999988864
Q ss_pred CcccccCCCCCCEEEcccccccccCCcCcC-----CCCCCCceeccccccccc----CCccCCCCCCCCEEEccCccccc
Q 011653 159 IPPAISNLSNLLTLVLEGNKLTGPIPTTFG-----RLQKLQGLFLAFNKLVGS----CPDELCHLDRLDKLVLLGNKFSG 229 (480)
Q Consensus 159 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 229 (480)
++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 356667789999999999988754444333 356899999999988764 56677788999999999998865
Q ss_pred cC-----CccCCCCCCCCEEEcCCcccccc----CCccccCCCCCCEEecCCCccCCCCCccccc-----cccCCeeecC
Q 011653 230 SI-----PSCLSNLTSLRFLYLGSNRFTSV----IPSTFWRLKDILFLDFSSNLLVGTLSFDIGN-----LKVLLGINLS 295 (480)
Q Consensus 230 ~~-----p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~ 295 (480)
.. +..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 23334678999999999988764 5666777899999999999887654444433 2689999999
Q ss_pred Ccccccc----CCccccCCCCCcEEeCcCccccccCCccccC-----CCCCCEEEccCCcccc----cCccccccCCCCC
Q 011653 296 ENNLSGD----MPATIGGLKSLQIMDLAYNRLEGQIPESFDD-----LTSLEVMNLSNNKISG----SIPKSMEKLFYLR 362 (480)
Q Consensus 296 ~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~----~~p~~l~~~~~L~ 362 (480)
+|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9998865 4566777899999999999988765554442 6789999999999986 7788888899999
Q ss_pred EEECccCccccc
Q 011653 363 ELNLSFNELEGE 374 (480)
Q Consensus 363 ~l~l~~n~~~~~ 374 (480)
.+++++|++++.
T Consensus 402 ~L~l~~N~i~~~ 413 (461)
T 1z7x_W 402 ELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSSCCHH
T ss_pred EEECCCCCCCHH
Confidence 999999988743
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2e-35 Score=293.47 Aligned_cols=369 Identities=19% Similarity=0.150 Sum_probs=285.2
Q ss_pred Cccccccchh-hhcCccccceecccccccc----cCchhhhcCCCCCcEEEcccCcceecCCcccc-cCC----CCCEEe
Q 011653 2 NNLVGMVSAT-IFNMSTLKIIILINNSLSG----SLPSRIGLSLPTVEHLNLALNRFSGTIPSSIT-NAS----KLTLLE 71 (480)
Q Consensus 2 n~~~g~~~~~-~~~~~~L~~L~l~~~~~~~----~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~----~L~~L~ 71 (480)
|+++...... +..+++|++|++++|.+++ .++..+. .+++|++|++++|.+++..+..+. .++ +|++|+
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 4555544444 7889999999999999874 4566676 789999999999999765444443 345 799999
Q ss_pred ccCCcccc----cCcccccCCCCCCEEeccCcccCCCCCccccccc-ccCCCCCCEEECcCCcccccC----chhHhhcc
Q 011653 72 LGGNTFSG----LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSS-LANCKKLRSLNFIGNPLDGFL----PSSIGNLS 142 (480)
Q Consensus 72 l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~----p~~~~~~~ 142 (480)
+++|.+++ .++..+..+++|++|++++|.++.... ..+... ....++|++|++++|.+++.. +..+..+
T Consensus 92 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~- 169 (461)
T 1z7x_W 92 LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK- 169 (461)
T ss_dssp CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-
T ss_pred ccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC-
Confidence 99999985 458889999999999999999865310 000012 234678999999999998744 5556666
Q ss_pred ccCcEEEeecccCcccCccccc-----CCCCCCEEEccccccccc----CCcCcCCCCCCCceecccccccccC-----C
Q 011653 143 KSLETLGIANCSISGNIPPAIS-----NLSNLLTLVLEGNKLTGP----IPTTFGRLQKLQGLFLAFNKLVGSC-----P 208 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~-----~ 208 (480)
++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 6899999999998765444443 367999999999999863 5667788999999999999987542 2
Q ss_pred ccCCCCCCCCEEEccCcccccc----CCccCCCCCCCCEEEcCCccccccCCccccC-----CCCCCEEecCCCccCCC-
Q 011653 209 DELCHLDRLDKLVLLGNKFSGS----IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR-----LKDILFLDFSSNLLVGT- 278 (480)
Q Consensus 209 ~~~~~~~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~- 278 (480)
..+..+++|++|++++|.++.. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|.+++.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 3344689999999999998864 5667778999999999999987654433332 36999999999999876
Q ss_pred ---CCccccccccCCeeecCCccccccCCccccC-----CCCCcEEeCcCccccc----cCCccccCCCCCCEEEccCCc
Q 011653 279 ---LSFDIGNLKVLLGINLSENNLSGDMPATIGG-----LKSLQIMDLAYNRLEG----QIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 279 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~ 346 (480)
++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ .+|..+..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4555677899999999999998765554432 6899999999999986 688888899999999999999
Q ss_pred ccccCccccc-----cCCCCCEEECccCcccc
Q 011653 347 ISGSIPKSME-----KLFYLRELNLSFNELEG 373 (480)
Q Consensus 347 l~~~~p~~l~-----~~~~L~~l~l~~n~~~~ 373 (480)
+++.....+. ....|+.+++.++....
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 9864222222 23468888888776654
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.1e-30 Score=243.38 Aligned_cols=225 Identities=21% Similarity=0.253 Sum_probs=164.9
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEc
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (480)
.+++.|++++|.++ .+|..++++++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34556666666555 55555555666666666666655 55555556666666666666555 55555666666666666
Q ss_pred cCccccccCCccCC---------CCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeee
Q 011653 223 LGNKFSGSIPSCLS---------NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293 (480)
Q Consensus 223 ~~n~l~~~~p~~l~---------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 293 (480)
++|++.+.+|..+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66555555555544 3788888888888887 677778888888888888888875 455678888888888
Q ss_pred cCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccc
Q 011653 294 LSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 294 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
+++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..++.|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888766543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.1e-30 Score=240.89 Aligned_cols=247 Identities=21% Similarity=0.253 Sum_probs=154.6
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccc--cCchhHhhccccC
Q 011653 68 TLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG--FLPSSIGNLSKSL 145 (480)
Q Consensus 68 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~--~~p~~~~~~~~~L 145 (480)
+.++.+++.++. +|..+. ++|++|++++|.++..+. ..+.++++|++|++++|.++. ..|..+..+ ++|
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSL 80 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCC
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcccCcccccccc-ccc
Confidence 455566555552 333332 466777777777665542 345677777777777777652 235556665 678
Q ss_pred cEEEeecccCcccCcccccCCCCCCEEEcccccccccCC-cCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccC
Q 011653 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLG 224 (480)
Q Consensus 146 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 224 (480)
++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 88888888776 466667788888888888888875544 4677777777777777777766666677777777777777
Q ss_pred ccccc-cCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccC
Q 011653 225 NKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 225 n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 77665 45666666666777777666666655566666666666666666555444444444455555555555554444
Q ss_pred CccccCCC-CCcEEeCcCcccc
Q 011653 304 PATIGGLK-SLQIMDLAYNRLE 324 (480)
Q Consensus 304 ~~~~~~~~-~L~~L~l~~n~l~ 324 (480)
|..+..++ +|+.|++++|+++
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCEE
T ss_pred HHHHHhhhccCCEEEccCCCee
Confidence 44444442 4444444444443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.8e-30 Score=243.32 Aligned_cols=249 Identities=22% Similarity=0.260 Sum_probs=174.5
Q ss_pred cceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCccccc--CcccccCCCCCCEEec
Q 011653 19 KIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL--IPDTIGNLRNLAWLGL 96 (480)
Q Consensus 19 ~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l 96 (480)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56777777777 7887653 6888888888888743333467888888888888887633 3555667788888888
Q ss_pred cCcccCCCCCcccccccccCCCCCCEEECcCCcccccCc-hhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcc
Q 011653 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (480)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 175 (480)
++|.++..+ ..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 86 s~n~i~~l~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 86 SFNGVITMS------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CSCSEEEEE------EEEETCTTCCEEECTTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCCccccCh------hhcCCCCCCCEEECCCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 888777554 557777888888888887775443 345555 567777777777776666667777777777777
Q ss_pred cccccc-cCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCcccccc
Q 011653 176 GNKLTG-PIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV 254 (480)
Q Consensus 176 ~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 254 (480)
+|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 777765 4566677777777777777777766666677777777777777777655555566667777777777777666
Q ss_pred CCccccCCC-CCCEEecCCCccCCC
Q 011653 255 IPSTFWRLK-DILFLDFSSNLLVGT 278 (480)
Q Consensus 255 ~~~~~~~~~-~L~~L~l~~n~l~~~ 278 (480)
.|..+..++ +|+.|++++|.+.+.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CHHHHHhhhccCCEEEccCCCeecc
Confidence 666666653 666666666666543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.7e-30 Score=242.11 Aligned_cols=234 Identities=23% Similarity=0.269 Sum_probs=135.0
Q ss_pred CCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCC
Q 011653 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (480)
Q Consensus 40 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~ 119 (480)
.++++.|++++|.++ .+|..++++++|++|++++|.++ .+|..++.+++|++|++++|.++..| ..+.++++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp------~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP------ASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC------GGGGGCTT
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc------HHHhcCcC
Confidence 466777777777776 66666777777777777777776 56666667777777777777666444 55666666
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecc
Q 011653 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199 (480)
Q Consensus 120 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 199 (480)
|++|++++|.+.+.+|..+... .++..+..+++|++|++++|.++ .+|..++.+++|++|+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred CCEEECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence 6666666666666666544320 00111223455555555555554 444445555555555555
Q ss_pred cccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCC
Q 011653 200 FNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (480)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (480)
+|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 215 ~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 215 NSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp SSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 555542 3334555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CccccccccCCeeecCCccc
Q 011653 280 SFDIGNLKVLLGINLSENNL 299 (480)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~l 299 (480)
|..++.+++|+.+++..+.+
T Consensus 294 P~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGS
T ss_pred cHHHhhccCceEEeCCHHHH
Confidence 55555555555555554433
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=249.56 Aligned_cols=280 Identities=23% Similarity=0.261 Sum_probs=156.3
Q ss_pred hcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCC
Q 011653 13 FNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92 (480)
Q Consensus 13 ~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 92 (480)
..|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34555555566666665 5665543 3566666666666544444566666666666666666655555566666666
Q ss_pred EEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCch--hHhhccccCcEEEeecc-cCcccCcccccCCCCC
Q 011653 93 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPS--SIGNLSKSLETLGIANC-SISGNIPPAISNLSNL 169 (480)
Q Consensus 93 ~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L 169 (480)
+|++++|.+++.+. ..+.++++|++|++++|.++ .+|. .+..+ ++|++|++++| .+....+..+..+++|
T Consensus 104 ~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 104 HLDLSYNYLSNLSS-----SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp EEECCSSCCSSCCH-----HHHTTCTTCSEEECTTCCCS-SSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred EEECCCCcCCcCCH-----hHhCCCccCCEEECCCCCCc-ccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCC
Confidence 66666666655431 22555556666666665555 2332 34444 45555555555 2443334445555555
Q ss_pred CEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCc
Q 011653 170 LTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSN 249 (480)
Q Consensus 170 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 249 (480)
++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++ ++|
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L------------------------~~n 232 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL------------------------RDT 232 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE------------------------ESC
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC------------------------CCC
Confidence 55555555555544555555555555555555543222112223444444444 444
Q ss_pred cccccCCcccc---CCCCCCEEecCCCccCC----CCCccccccccCCeeecCCccccccCCcc-ccCCCCCcEEeCcCc
Q 011653 250 RFTSVIPSTFW---RLKDILFLDFSSNLLVG----TLSFDIGNLKVLLGINLSENNLSGDMPAT-IGGLKSLQIMDLAYN 321 (480)
Q Consensus 250 ~~~~~~~~~~~---~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n 321 (480)
.+++..+..+. ..+.++.++++++.+.+ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 44433322221 23456666666666654 34556677888888888888887 55554 578888888888888
Q ss_pred cccccCC
Q 011653 322 RLEGQIP 328 (480)
Q Consensus 322 ~l~~~~p 328 (480)
++.+..|
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 8876543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=247.75 Aligned_cols=286 Identities=18% Similarity=0.228 Sum_probs=179.7
Q ss_pred ccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHh
Q 011653 60 SITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIG 139 (480)
Q Consensus 60 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~ 139 (480)
+-..|+.....+.+++.++. +|..+. ++|++|++++|.+++.+. ..+.++++|++|++++|.+++..|..+.
T Consensus 26 ~~~~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp -CCEECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cCCCCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhhcC
Confidence 34456666677888887773 455443 478888888888876642 4677888888888888888876666777
Q ss_pred hccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCC-cCcCCCCCCCceecccc-cccccCCccCCCCCCC
Q 011653 140 NLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQGLFLAFN-KLVGSCPDELCHLDRL 217 (480)
Q Consensus 140 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L 217 (480)
.+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+....+..+..+++|
T Consensus 98 ~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 98 SL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CC-CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 76 678888888888775444447778888888888887774333 36777777777777777 3555555667777777
Q ss_pred CEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCc
Q 011653 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297 (480)
Q Consensus 218 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 297 (480)
++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------ 244 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------ 244 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------------
Confidence 77777777777666667777777777777777665332223334566666666666665543332211
Q ss_pred cccccCCccccCCCCCcEEeCcCccccc----cCCccccCCCCCCEEEccCCcccccCccc-cccCCCCCEEECccCccc
Q 011653 298 NLSGDMPATIGGLKSLQIMDLAYNRLEG----QIPESFDDLTSLEVMNLSNNKISGSIPKS-MEKLFYLRELNLSFNELE 372 (480)
Q Consensus 298 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~~~~L~~l~l~~n~~~ 372 (480)
...++.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.+++++|++.
T Consensus 245 ---------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 245 ---------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp -----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 1123344455555554443 24455555666666666666665 34433 355566666666666665
Q ss_pred ccCC
Q 011653 373 GEIP 376 (480)
Q Consensus 373 ~~~p 376 (480)
+.+|
T Consensus 315 ~~~~ 318 (353)
T 2z80_A 315 CSCP 318 (353)
T ss_dssp CCHH
T ss_pred CcCC
Confidence 5443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=8e-29 Score=244.86 Aligned_cols=247 Identities=23% Similarity=0.220 Sum_probs=132.5
Q ss_pred CCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 170 (480)
...++..+..++..|. .+. ++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+..|..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~------~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ------GIP--SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCS------CCC--TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CcEEEECCCCcCccCC------CCC--CCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccCcccCC
Confidence 3455555555555442 221 456666666666665555555555 4566666666666555555556666666
Q ss_pred EEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCC-ccCCCCCCCCEEEcCCc
Q 011653 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSN 249 (480)
Q Consensus 171 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n 249 (480)
+|+|++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 66666666655444555556666666666666554444455555666666665533222222 23555555555555555
Q ss_pred cccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCc
Q 011653 250 RFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPE 329 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 329 (480)
++++. | .+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+.
T Consensus 207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 55532 2 344455555555555555555555555555555555555555544455555555555555555555544444
Q ss_pred cccCCCCCCEEEccCCccc
Q 011653 330 SFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 330 ~~~~l~~L~~L~l~~n~l~ 348 (480)
.+..+++|+.|++++|++.
T Consensus 285 ~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SSTTCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEccCCCcC
Confidence 4455555555555555443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=241.63 Aligned_cols=247 Identities=25% Similarity=0.233 Sum_probs=156.5
Q ss_pred CCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 170 (480)
.+.++..+..++..|. .+. ++++.|++++|.+.+..+..+..+ ++|++|+|++|.+++..+..|..+++|+
T Consensus 45 ~~~v~c~~~~l~~iP~------~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD------GIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCS------CCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCC------CCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCCccCC
Confidence 4566666666666552 222 467777777777776666666666 5677777777777666666677777777
Q ss_pred EEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccC-CccCCCCCCCCEEEcCCc
Q 011653 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSI-PSCLSNLTSLRFLYLGSN 249 (480)
Q Consensus 171 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n 249 (480)
+|+|++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|+..+.+ +..+..+++|+.|++++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 7777777777555556677777777777777776655556666777777777664333233 334666666777777666
Q ss_pred cccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCc
Q 011653 250 RFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPE 329 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 329 (480)
+++. +| .+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+.
T Consensus 196 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 6653 33 355566666666666666665566666666666666666666655555666666666666666666655555
Q ss_pred cccCCCCCCEEEccCCccc
Q 011653 330 SFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 330 ~~~~l~~L~~L~l~~n~l~ 348 (480)
.+..+++|+.|++++|++.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEcCCCCcc
Confidence 5556666666666666554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5e-29 Score=230.91 Aligned_cols=252 Identities=22% Similarity=0.229 Sum_probs=168.7
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccc
Q 011653 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (480)
Q Consensus 121 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 200 (480)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555555 344332 24567777777766655555666777777777777777666666677777777777777
Q ss_pred cc-ccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCC
Q 011653 201 NK-LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (480)
Q Consensus 201 n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (480)
|. +....|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 75 55555666777777777777777777666666777777777777777777665566677777777777777777655
Q ss_pred CccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCC
Q 011653 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (480)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~ 359 (480)
+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 556677777777777777777777777777777888888888777655566777777888888887776443321 1112
Q ss_pred CCCEEECccCcccccCCC
Q 011653 360 YLRELNLSFNELEGEIPS 377 (480)
Q Consensus 360 ~L~~l~l~~n~~~~~~p~ 377 (480)
.++.+....+.+.+..|.
T Consensus 249 ~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHCCSEECCCBEEESG
T ss_pred HHHhcccccCccccCCch
Confidence 344444566666666664
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.5e-30 Score=244.26 Aligned_cols=247 Identities=19% Similarity=0.219 Sum_probs=138.3
Q ss_pred CCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccC-cccCccccc-------CCCCCCEEEcccccccccCCcCc
Q 011653 116 NCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSI-SGNIPPAIS-------NLSNLLTLVLEGNKLTGPIPTTF 187 (480)
Q Consensus 116 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~ 187 (480)
..++|+.|++++|.+ .+|..+... |++|++++|.+ ...+|..+. .+++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 334445555555555 444444432 45555555554 223444333 45555555555555555555543
Q ss_pred --CCCCCCCceecccccccccCCccCCCC-----CCCCEEEccCccccccCCccCCCCCCCCEEEcCCcccccc--CCcc
Q 011653 188 --GRLQKLQGLFLAFNKLVGSCPDELCHL-----DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV--IPST 258 (480)
Q Consensus 188 --~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~~~~ 258 (480)
..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..|..++.+++|+.|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5555555555555555544 4444443 5666666666666555555566666666666666665443 1222
Q ss_pred c--cCCCCCCEEecCCCccCCC--CC-ccccccccCCeeecCCccccccCC-ccccCCCCCcEEeCcCccccccCCcccc
Q 011653 259 F--WRLKDILFLDFSSNLLVGT--LS-FDIGNLKVLLGINLSENNLSGDMP-ATIGGLKSLQIMDLAYNRLEGQIPESFD 332 (480)
Q Consensus 259 ~--~~~~~L~~L~l~~n~l~~~--~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 332 (480)
+ ..+++|+.|++++|.+.+. ++ ..+..+++|++|++++|.+++..| ..+..+++|+.|++++|+++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 2 4566666666666666521 11 223455666666777666665553 34445667777777777766 5565554
Q ss_pred CCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccc
Q 011653 333 DLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 333 ~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
++|++|++++|++++. |. +..++.|+.+++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6677777777777654 44 6666777777777777654
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.3e-30 Score=242.91 Aligned_cols=246 Identities=20% Similarity=0.136 Sum_probs=148.4
Q ss_pred CCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcc-cccCccccc-------CCCCCCEEeccCcccCCC-CCcccc
Q 011653 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTF-SGLIPDTIG-------NLRNLAWLGLAYNNLTSS-TSKLSF 110 (480)
Q Consensus 40 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~-~~~~~~ 110 (480)
.++|+.+++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++. |
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP----- 112 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC-----
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH-----
Confidence 34445555555554 344444332 45555555544 223333333 455555555555555543 2
Q ss_pred cccc--cCCCCCCEEECcCCcccccCchhHhhcc----ccCcEEEeecccCcccCcccccCCCCCCEEEccccccccc--
Q 011653 111 LSSL--ANCKKLRSLNFIGNPLDGFLPSSIGNLS----KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGP-- 182 (480)
Q Consensus 111 ~~~l--~~~~~L~~L~l~~n~l~~~~p~~~~~~~----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-- 182 (480)
..+ ..+++|++|++++|.+++. |..+..+. ++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 113 -~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 -PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp -CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred -HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 222 5555566666666665544 55555441 4677777777777666666677777777777777776543
Q ss_pred CCcCc--CCCCCCCceecccccccc--cCC-ccCCCCCCCCEEEccCccccccCC-ccCCCCCCCCEEEcCCccccccCC
Q 011653 183 IPTTF--GRLQKLQGLFLAFNKLVG--SCP-DELCHLDRLDKLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSNRFTSVIP 256 (480)
Q Consensus 183 ~~~~~--~~~~~L~~L~l~~n~~~~--~~~-~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~ 256 (480)
.+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 22223 667777777777777662 122 233456777777777777776554 34555677888888888777 566
Q ss_pred ccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccc
Q 011653 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSG 301 (480)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 301 (480)
..+. ++|+.|++++|.+++. |. +..+++|++|++++|.+++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6655 6778888888888766 43 7777888888888887764
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.3e-28 Score=224.65 Aligned_cols=228 Identities=23% Similarity=0.254 Sum_probs=209.3
Q ss_pred cEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCc
Q 011653 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN 225 (480)
Q Consensus 146 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 225 (480)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 567654 479999999999999888888999999999999999999888999999999999999999
Q ss_pred c-ccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCC
Q 011653 226 K-FSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMP 304 (480)
Q Consensus 226 ~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 304 (480)
. +....|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776668889999999999999999998888999999999999999999998887788999999999999999997667
Q ss_pred ccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 305 ATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 305 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..++.|+.+++++|++.+.++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 779999999999999999998889999999999999999999998777789999999999999999987655
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.8e-28 Score=237.86 Aligned_cols=246 Identities=25% Similarity=0.286 Sum_probs=156.4
Q ss_pred ccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEecc
Q 011653 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (480)
Q Consensus 18 L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 97 (480)
.+.++.++..++ .+|..+. ++++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445666666666 6776553 567777777777776666667777777777777777776666667777777777777
Q ss_pred CcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCc-ccccCCCCCCEEEccc
Q 011653 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP-PAISNLSNLLTLVLEG 176 (480)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~ 176 (480)
+|.++..+. ..+..+++|++|++++|.+....+..+..+ ++|++|++++|...+.++ ..+..+++|++|++++
T Consensus 121 ~n~l~~~~~-----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 121 DNRLTTIPN-----GAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SSCCSSCCT-----TTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CCcCCeeCH-----hHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 777766542 456667777777777777665444455555 567777776643322333 3556666666666666
Q ss_pred ccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCC
Q 011653 177 NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256 (480)
Q Consensus 177 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 256 (480)
|.++ .+| .+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 195 n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp SCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred CcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 6666 333 35566666666666666666556666666666666666666665555566666666666666666665555
Q ss_pred ccccCCCCCCEEecCCCcc
Q 011653 257 STFWRLKDILFLDFSSNLL 275 (480)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l 275 (480)
..+..+++|+.|+|++|.+
T Consensus 273 ~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTSSCTTCCEEECCSSCE
T ss_pred hHhccccCCCEEEcCCCCc
Confidence 5555566666666666655
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.4e-28 Score=237.95 Aligned_cols=245 Identities=23% Similarity=0.212 Sum_probs=116.0
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcE
Q 011653 68 TLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLET 147 (480)
Q Consensus 68 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 147 (480)
+.++.++..++. +|..+. ++++.|++++|.+++.+. ..|.++++|++|++++|.+++..|..+..+ ++|++
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~ 127 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQA-----DTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNT 127 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCE
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECH-----HHcCCCCCCCEEECCCCccCCcChhhccCc-ccCCE
Confidence 344444444442 333222 345555555555544421 344455555555555555554444444444 34555
Q ss_pred EEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccc-ccccCCccCCCCCCCCEEEccCcc
Q 011653 148 LGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK-LVGSCPDELCHLDRLDKLVLLGNK 226 (480)
Q Consensus 148 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~ 226 (480)
|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|.
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 5555555543333344445555555555555544434444555555555555432 222222234445555555555555
Q ss_pred ccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCcc
Q 011653 227 FSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPAT 306 (480)
Q Consensus 227 l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 306 (480)
+++ +| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..+..
T Consensus 208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 442 22 2444455555555555555444455555555555555555555444444555555555555555555433444
Q ss_pred ccCCCCCcEEeCcCccc
Q 011653 307 IGGLKSLQIMDLAYNRL 323 (480)
Q Consensus 307 ~~~~~~L~~L~l~~n~l 323 (480)
+..+++|+.|++++|.+
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 44455555555555543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.7e-29 Score=237.54 Aligned_cols=258 Identities=19% Similarity=0.169 Sum_probs=143.2
Q ss_pred cccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEec
Q 011653 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (480)
Q Consensus 17 ~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 96 (480)
.++..+++.+.+. ..+..+...+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3455566666665 4444444456677777777777776666677777777777777777766543 667777777777
Q ss_pred cCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEccc
Q 011653 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (480)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 176 (480)
++|.+++.+ ..++|++|++++|.+++..+.. + ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 88 s~n~l~~l~----------~~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 88 NNNYVQELL----------VGPSIETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSEEEEEE----------ECTTCCEEECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred cCCcccccc----------CCCCcCEEECCCCccCCcCccc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 777765432 2356677777766666443322 2 3566666666666554455555556666666666
Q ss_pred ccccccCCcCc-CCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccC
Q 011653 177 NKLTGPIPTTF-GRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVI 255 (480)
Q Consensus 177 n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 255 (480)
|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++| .+++.
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N------------------------~l~~l- 206 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSN------------------------KLAFM- 206 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSS------------------------CCCEE-
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCC------------------------cCCcc-
Confidence 65555444433 2455555555555555433 1 1122444444444444 44432
Q ss_pred CccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcccc-ccCCccccCCCCCcEEeCc
Q 011653 256 PSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS-GDMPATIGGLKSLQIMDLA 319 (480)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~ 319 (480)
|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.++++
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 222444445555555555444 23334444555555555555554 4444445555555555554
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.8e-31 Score=272.09 Aligned_cols=357 Identities=16% Similarity=0.095 Sum_probs=222.8
Q ss_pred cCccccceecccccccccCchhhhcCCCC-CcEEEcccCc-cee-cCCcccccCCCCCEEeccCCccccc----Cccccc
Q 011653 14 NMSTLKIIILINNSLSGSLPSRIGLSLPT-VEHLNLALNR-FSG-TIPSSITNASKLTLLELGGNTFSGL----IPDTIG 86 (480)
Q Consensus 14 ~~~~L~~L~l~~~~~~~~ip~~~~~~l~~-L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~ 86 (480)
.|++|++|++++|.+++..+..+...+++ |++|++++|. ++. .++....++++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 89999999999998887777766633455 9999999987 321 2333445889999999999988766 334456
Q ss_pred CCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCc---ccCcccc
Q 011653 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS---GNIPPAI 163 (480)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~---~~~~~~l 163 (480)
.+++|+.|++++|.+++... ..+...+.++++|++|++++|.+.+ +|..+..+ ++|++|+++..... ...+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISP-KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCH-HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCccCH-HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHHHHHh
Confidence 78999999999999874310 1122456789999999999998885 67778887 78999998753221 1222334
Q ss_pred cCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccccccc-------------------------CCccCCCCCCCC
Q 011653 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGS-------------------------CPDELCHLDRLD 218 (480)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-------------------------~~~~~~~~~~L~ 218 (480)
..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++. ++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 444455555544432 123344444444555555554443322 222223345555
Q ss_pred EEEccC-----------cccccc-CCccCCCCCCCCEEEcCCccccccCCccccC-CCCCCEEecC----CCccCCC---
Q 011653 219 KLVLLG-----------NKFSGS-IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR-LKDILFLDFS----SNLLVGT--- 278 (480)
Q Consensus 219 ~L~l~~-----------n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~--- 278 (480)
+|++++ +.+++. ++.....+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 555552 233221 1111233556666666555555544444443 6677777774 4455542
Q ss_pred --CCccccccccCCeeecCCcc--ccccCCcccc-CCCCCcEEeCcCcccccc-CCccccCCCCCCEEEccCCccccc-C
Q 011653 279 --LSFDIGNLKVLLGINLSENN--LSGDMPATIG-GLKSLQIMDLAYNRLEGQ-IPESFDDLTSLEVMNLSNNKISGS-I 351 (480)
Q Consensus 279 --~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~-~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~-~ 351 (480)
++..+..+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++. ++..+..+++|++|++++|.+++. +
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 22234556777777776433 5544444333 377888888888887763 445556778888888888887654 3
Q ss_pred ccccccCCCCCEEECccCccccc
Q 011653 352 PKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 352 p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
+.....+++|+.+++++|+++..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCccCeeECcCCcCCHH
Confidence 44455678888888888887643
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.7e-27 Score=239.93 Aligned_cols=266 Identities=26% Similarity=0.348 Sum_probs=140.1
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEe
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 95 (480)
.+++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35666777777766 6666553 56777777777666 4454 45666677777666663 333 456666666
Q ss_pred ccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcc
Q 011653 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (480)
Q Consensus 96 l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 175 (480)
+++|.+++.+ . .+++|+.|++++|.++. +|.. + ++|++|++++|.+++ +|. .+++|+.|+++
T Consensus 108 Ls~N~l~~l~------~---~l~~L~~L~L~~N~l~~-lp~~---l-~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 108 IFSNPLTHLP------A---LPSGLCKLWIFGNQLTS-LPVL---P-PGLQELSVSDNQLAS-LPA---LPSELCKLWAY 169 (622)
T ss_dssp ECSCCCCCCC------C---CCTTCCEEECCSSCCSC-CCCC---C-TTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CcCCcCCCCC------C---CCCCcCEEECCCCCCCc-CCCC---C-CCCCEEECcCCcCCC-cCC---ccCCCCEEECC
Confidence 6666666553 2 34556666666666653 3432 1 456666666665552 332 23455566666
Q ss_pred cccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccC
Q 011653 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVI 255 (480)
Q Consensus 176 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 255 (480)
+|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|++++ +
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-C
Confidence 665553 33 234555555555555543 2221 244555555555544 23321 2445555555554443 2
Q ss_pred CccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCC
Q 011653 256 PSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLT 335 (480)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 335 (480)
| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..++
T Consensus 237 p---------------------------~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 237 P---------------------------VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp C---------------------------CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred C---------------------------CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 2 22344555555555554 3333 3345555555555555 4455555555
Q ss_pred CCCEEEccCCcccccCccccc
Q 011653 336 SLEVMNLSNNKISGSIPKSME 356 (480)
Q Consensus 336 ~L~~L~l~~n~l~~~~p~~l~ 356 (480)
+|+.|++++|++++..|..+.
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHH
Confidence 555555555555554444333
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=8.7e-27 Score=236.16 Aligned_cols=262 Identities=26% Similarity=0.297 Sum_probs=170.2
Q ss_pred CCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCC
Q 011653 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLR 121 (480)
Q Consensus 42 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~ 121 (480)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|+.|++++|.++..| . .+++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp------~---~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP------V---LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC------C---CCTTCC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC------C---CCCCCC
Confidence 4666666666665 5555444 566666666666653 233 3455666666666555443 1 334555
Q ss_pred EEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccc
Q 011653 122 SLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFN 201 (480)
Q Consensus 122 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 201 (480)
+|++++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|
T Consensus 105 ~L~Ls~N~l~~--------------------------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 105 ELSIFSNPLTH--------------------------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp EEEECSCCCCC--------------------------CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred EEECcCCcCCC--------------------------CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 55555554442 222 23445555555555543 3321 255555555555
Q ss_pred cccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCc
Q 011653 202 KLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281 (480)
Q Consensus 202 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 281 (480)
.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.+.. +|.
T Consensus 152 ~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~ 218 (622)
T 3g06_A 152 QLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA 218 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC
T ss_pred cCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC
Confidence 5543 222 23556666666666663 44 345677777777777764 3332 3677888888887764 332
Q ss_pred cccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCC
Q 011653 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYL 361 (480)
Q Consensus 282 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L 361 (480)
.+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|
T Consensus 219 ---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 219 ---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp ---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred ---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 24789999999999985 66 45689999999999998 5666 6789999999999999 889999999999
Q ss_pred CEEECccCcccccCCC
Q 011653 362 RELNLSFNELEGEIPS 377 (480)
Q Consensus 362 ~~l~l~~n~~~~~~p~ 377 (480)
+.+++++|++++.+|.
T Consensus 287 ~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CEEECCSCCCCHHHHH
T ss_pred CEEEecCCCCCCcCHH
Confidence 9999999999876543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.5e-29 Score=237.92 Aligned_cols=267 Identities=21% Similarity=0.173 Sum_probs=177.7
Q ss_pred CcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCE
Q 011653 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 122 (480)
Q Consensus 43 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~ 122 (480)
++..+++.+.+...+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+ .+..+++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~ 84 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRT 84 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCE
Confidence 444455555555333344445567777777777777666666777777777777777665442 2566666666
Q ss_pred EECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccc
Q 011653 123 LNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202 (480)
Q Consensus 123 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 202 (480)
|++++|.+++..+ . ++|++|++++|.+++..+. .+++|++|++++| .
T Consensus 85 L~Ls~n~l~~l~~-----~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N------------------------~ 131 (317)
T 3o53_A 85 LDLNNNYVQELLV-----G-PSIETLHAANNNISRVSCS---RGQGKKNIYLANN------------------------K 131 (317)
T ss_dssp EECCSSEEEEEEE-----C-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSS------------------------C
T ss_pred EECcCCccccccC-----C-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCC------------------------C
Confidence 6666666653211 1 3455555555555433222 1344444555444 4
Q ss_pred ccccCCccCCCCCCCCEEEccCccccccCCccC-CCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCc
Q 011653 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCL-SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281 (480)
Q Consensus 203 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 281 (480)
+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++. + ....+++|+.|++++|.+.+.. .
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~ 208 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-P 208 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-G
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-h
Confidence 444444444445555555555555554444444 3567777777777777654 2 2234789999999999998654 4
Q ss_pred cccccccCCeeecCCccccccCCccccCCCCCcEEeCcCcccc-ccCCccccCCCCCCEEEccCC-cccccCcc
Q 011653 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE-GQIPESFDDLTSLEVMNLSNN-KISGSIPK 353 (480)
Q Consensus 282 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~ 353 (480)
.+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.++++++ .+.|..|.
T Consensus 209 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 5889999999999999999 67888999999999999999998 778889999999999999854 56666554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-28 Score=243.97 Aligned_cols=236 Identities=18% Similarity=0.198 Sum_probs=147.0
Q ss_pred CCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCce
Q 011653 117 CKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGL 196 (480)
Q Consensus 117 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 196 (480)
+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 3356666666666665555555555 456666666666654433 5566666666666666654321 2566666
Q ss_pred ecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCcccc-CCCCCCEEecCCCcc
Q 011653 197 FLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFW-RLKDILFLDFSSNLL 275 (480)
Q Consensus 197 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l 275 (480)
++++|.+++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 6666666654433 245666666666666666666666666777777777776666666554 566777777777776
Q ss_pred CCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCccc-ccCccc
Q 011653 276 VGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS-GSIPKS 354 (480)
Q Consensus 276 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~ 354 (480)
++..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 65422 2346677777777777774 33446667777777777777773 5666777777777777777776 555666
Q ss_pred cccCCCCCEEECc
Q 011653 355 MEKLFYLRELNLS 367 (480)
Q Consensus 355 l~~~~~L~~l~l~ 367 (480)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 6666666666554
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.2e-30 Score=262.67 Aligned_cols=366 Identities=13% Similarity=0.072 Sum_probs=246.3
Q ss_pred cccccchhhhcCccccceeccccccc---ccCchh-----------hhcCCCCCcEEEcccCcceecCCccccc-CC-CC
Q 011653 4 LVGMVSATIFNMSTLKIIILINNSLS---GSLPSR-----------IGLSLPTVEHLNLALNRFSGTIPSSITN-AS-KL 67 (480)
Q Consensus 4 ~~g~~~~~~~~~~~L~~L~l~~~~~~---~~ip~~-----------~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~-~L 67 (480)
+....+..+..+++|++|+++++... +.+|.. +...+++|++|+|++|.+++..+..+.. ++ +|
T Consensus 61 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 61 YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDL 140 (592)
T ss_dssp GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccC
Confidence 34444556778999999999885431 234322 2226899999999999998777777766 44 49
Q ss_pred CEEeccCCc-cccc-CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCccc----ccCchhHhhc
Q 011653 68 TLLELGGNT-FSGL-IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLD----GFLPSSIGNL 141 (480)
Q Consensus 68 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~----~~~p~~~~~~ 141 (480)
++|++++|. ++.. ++.....+++|++|++++|.+++....| +...+.++++|++|++++|.++ +.++..+..+
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 999999886 3221 2233347899999999999987652110 1234577899999999999987 3445555666
Q ss_pred cccCcEEEeecccCcccCcccccCCCCCCEEEccccccc---ccCCcCcCCCCCCCceecccccccccCCccCCCCCCCC
Q 011653 142 SKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLT---GPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLD 218 (480)
Q Consensus 142 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 218 (480)
++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.++++++. .+.+|..+..+++|+
T Consensus 220 -~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 220 -RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIR 296 (592)
T ss_dssp -TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCC
T ss_pred -CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCc
Confidence 789999999999885 7788999999999999864332 3445677889999999998853 346777888899999
Q ss_pred EEEccCccccccCC-ccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCC-----------CccCCCCCc-cccc
Q 011653 219 KLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS-----------NLLVGTLSF-DIGN 285 (480)
Q Consensus 219 ~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~-~~~~ 285 (480)
+|++++|.+++... ..+..+++|+.|+++++-..+.++.....+++|+.|++++ |.+++.... ....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999998764433 3357788899998884332333344445677788888883 444432222 2344
Q ss_pred cccCCeeecCCccccccCCccccC-CCCCcEEeCc----Ccccccc-----CCccccCCCCCCEEEccCCc--ccccCcc
Q 011653 286 LKVLLGINLSENNLSGDMPATIGG-LKSLQIMDLA----YNRLEGQ-----IPESFDDLTSLEVMNLSNNK--ISGSIPK 353 (480)
Q Consensus 286 ~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~l~~n~--l~~~~p~ 353 (480)
+++|++|+++.+.+++..+..++. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 677777777777776655555544 6677777775 4455542 22334456666666665432 4433333
Q ss_pred cccc-CCCCCEEECccCcccc
Q 011653 354 SMEK-LFYLRELNLSFNELEG 373 (480)
Q Consensus 354 ~l~~-~~~L~~l~l~~n~~~~ 373 (480)
.+.. ++.|+.+++++|.+++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSH
T ss_pred HHHHhCccceEeeccCCCCCH
Confidence 3332 5556666666665543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=236.33 Aligned_cols=235 Identities=18% Similarity=0.149 Sum_probs=178.2
Q ss_pred CCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCC
Q 011653 41 PTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL 120 (480)
Q Consensus 41 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L 120 (480)
++|+.|+|++|.+++..|..+.++++|++|+|++|.+++..| ++.+++|+.|++++|.+++.+ ..++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCCCc
Confidence 378888888888877666777888888888888888776655 777888888888888776542 22678
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcC-CCCCCCceecc
Q 011653 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFG-RLQKLQGLFLA 199 (480)
Q Consensus 121 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~ 199 (480)
++|++++|.+++..+.. + ++|++|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|++|+++
T Consensus 102 ~~L~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 88888888877655432 3 5688888888888877777778888888888888888877777665 67888888888
Q ss_pred cccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccC-CC
Q 011653 200 FNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV-GT 278 (480)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~ 278 (480)
+|.+++..+ ...+++|++|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 888876522 33578888888888888854 4457788888888888888885 6777888888888888888887 56
Q ss_pred CCccccccccCCeeecC
Q 011653 279 LSFDIGNLKVLLGINLS 295 (480)
Q Consensus 279 ~~~~~~~~~~L~~L~l~ 295 (480)
+|..+..++.|+.++++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 66667778888877775
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.9e-26 Score=209.75 Aligned_cols=212 Identities=21% Similarity=0.244 Sum_probs=113.3
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEc
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (480)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666544445666666666666666666555555566666666666666665555555555555666665
Q ss_pred cCccccccCCccCCCCCCCCEEEcCCcccccc-CCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccc
Q 011653 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV-IPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSG 301 (480)
Q Consensus 223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 301 (480)
++|.+.+..+..+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 55555544444455555555555555555442 345555555555555555555444444444333333
Q ss_pred cCCccccCCCCCc-EEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 302 DMPATIGGLKSLQ-IMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 302 ~~~~~~~~~~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
.|. .|++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.+++++|++.+.+|
T Consensus 177 ----------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 177 ----------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ----------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ----------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 111 455555555533333332 2245555555555554444444555566666666666655544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.9e-25 Score=205.84 Aligned_cols=224 Identities=27% Similarity=0.284 Sum_probs=172.7
Q ss_pred EEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEE
Q 011653 93 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTL 172 (480)
Q Consensus 93 ~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 172 (480)
..+.....++..| ..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|
T Consensus 11 ~~~c~~~~l~~ip------~~l~--~~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 11 TYQCMELNFYKIP------DNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp EEECTTSCCSSCC------SSSC--TTCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred eEEecCCCccccC------CCCC--CCccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 3445555565555 3332 579999999999997777788887 789999999999997777789999999999
Q ss_pred EcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccc-cCCccCCCCCCCCEEEcCCccc
Q 011653 173 VLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG-SIPSCLSNLTSLRFLYLGSNRF 251 (480)
Q Consensus 173 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~ 251 (480)
++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 999999998888899999999999999999998777789999999999999999986 4688999999999999999999
Q ss_pred cccCCccccCCCCCC----EEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccC
Q 011653 252 TSVIPSTFWRLKDIL----FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (480)
Q Consensus 252 ~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 327 (480)
++..+..+..+++|+ .|++++|.+.+.. +..+ ...+|+.|++++|++++..
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~------------------------~~~~-~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ------------------------PGAF-KEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEEC------------------------TTSS-CSCCEEEEECCSSCCSCCC
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccC------------------------cccc-CCCcccEEECCCCceeecC
Confidence 987777776666555 4555555544322 2222 2235666666666665444
Q ss_pred CccccCCCCCCEEEccCCccccc
Q 011653 328 PESFDDLTSLEVMNLSNNKISGS 350 (480)
Q Consensus 328 p~~~~~l~~L~~L~l~~n~l~~~ 350 (480)
+..+..+++|+.|++++|++++.
T Consensus 217 ~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTTTTTCCSCCEEECCSSCBCCC
T ss_pred HhHhcccccccEEEccCCccccc
Confidence 44455666666666666666643
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.2e-28 Score=252.59 Aligned_cols=351 Identities=17% Similarity=0.150 Sum_probs=153.6
Q ss_pred cCccccceecccccccccCchhhhcCCCCCcEEEcccC-cceec-CCcccccCCCCCEEeccCCcccccCccccc----C
Q 011653 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALN-RFSGT-IPSSITNASKLTLLELGGNTFSGLIPDTIG----N 87 (480)
Q Consensus 14 ~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~ 87 (480)
.+++|++|++++|.+++..+..+...+++|++|++++| .++.. ++....++++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45555566665555554444444323556666666555 33321 233333555666666665555443322222 4
Q ss_pred CCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccc-------CcccCc
Q 011653 88 LRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCS-------ISGNIP 160 (480)
Q Consensus 88 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~-------~~~~~~ 160 (480)
+++|+.|++++|. .... ...+...+.++++|++|++++|...+.+|..+..+ ++|++|+++.+. +. .++
T Consensus 183 ~~~L~~L~l~~~~-~~~~-~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-~l~ 258 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVS-FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYS-GLS 258 (594)
T ss_dssp CCCCCEEECTTCC-SCCC-HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHH-HHH
T ss_pred CCcCcEEEecccC-CcCC-HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHH-HHH
Confidence 4456666665554 1110 00000112334566666666552222244444444 455555543321 11 111
Q ss_pred ccccCCCCCCEE-EcccccccccCCcCcCCCCCCCceecccccccccC-CccCCCCCCCCEEEccCccccc-cCCccCCC
Q 011653 161 PAISNLSNLLTL-VLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSC-PDELCHLDRLDKLVLLGNKFSG-SIPSCLSN 237 (480)
Q Consensus 161 ~~l~~l~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~ 237 (480)
..+.++++|+.| .+.+.. .+.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +.. .++.....
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 223333333333 111111 1122222334566666666666654322 122445666666666655 221 12222223
Q ss_pred CCCCCEEEcCC---------ccccccCCcccc-CCCCCCEEecCCCccCCCCCcccc-ccccCCeeecC--C----cccc
Q 011653 238 LTSLRFLYLGS---------NRFTSVIPSTFW-RLKDILFLDFSSNLLVGTLSFDIG-NLKVLLGINLS--E----NNLS 300 (480)
Q Consensus 238 l~~L~~L~l~~---------n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~ 300 (480)
+++|+.|++.. +.+++.....+. .+++|+.|.+..|.+++.....+. .+++|+.|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 55566665522 223221111121 245555555555555443333332 35555555555 2 2333
Q ss_pred c-----cCCccccCCCCCcEEeCcCccccccCCccccC-CCCCCEEEccCCcccccCcccc-ccCCCCCEEECccCcc
Q 011653 301 G-----DMPATIGGLKSLQIMDLAYNRLEGQIPESFDD-LTSLEVMNLSNNKISGSIPKSM-EKLFYLRELNLSFNEL 371 (480)
Q Consensus 301 ~-----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~l-~~~~~L~~l~l~~n~~ 371 (480)
+ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.+++++|++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 1 1111234455555555544 444333333333 4555555555555544333332 3455555555555555
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.6e-25 Score=205.59 Aligned_cols=207 Identities=24% Similarity=0.234 Sum_probs=102.5
Q ss_pred cCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccC
Q 011653 86 GNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISN 165 (480)
Q Consensus 86 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 165 (480)
..+++|+.|++++|.++.. ..+..+++|++|++++|.+++ + ..+..+ ++|++|++++|.+++..+..+..
T Consensus 38 ~~l~~L~~L~l~~~~i~~~-------~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV-------QGIQYLPNVRYLALGGNKLHD-I-SALKEL-TNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC-------TTGGGCTTCCEEECTTSCCCC-C-GGGTTC-TTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccccceeeeeeCCCCcccc-------cccccCCCCcEEECCCCCCCC-c-hhhcCC-CCCCEEECCCCccCccChhHhcC
Confidence 3455555555555554433 234455555555555555543 1 233343 34555555555555444444455
Q ss_pred CCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEE
Q 011653 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245 (480)
Q Consensus 166 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 245 (480)
+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 55555555555555544444455555555555555555544444445555555555555555544444445555555555
Q ss_pred cCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccC
Q 011653 246 LGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGG 309 (480)
Q Consensus 246 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 309 (480)
+++|++++..+..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..++.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 555555544444444455555555555544322 233444444444444444444443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2e-24 Score=198.08 Aligned_cols=206 Identities=25% Similarity=0.295 Sum_probs=119.8
Q ss_pred cCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEcc
Q 011653 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223 (480)
Q Consensus 144 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 223 (480)
..++++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++...+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~--------------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA--------------- 78 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT---------------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh---------------
Confidence 3455555555555 3444332 345555555555554444445555555555555554443333
Q ss_pred CccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccC
Q 011653 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 224 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 79 ---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 79 ---------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp ---------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ---------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 33444555555555555555444444555555555555555555555555566666666666666666444
Q ss_pred CccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 304 PATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 304 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..++.|+.+++++|++.+.++
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 4456667777777777777765555566777777777777777775555556677777777777777766543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.5e-26 Score=208.71 Aligned_cols=205 Identities=26% Similarity=0.287 Sum_probs=120.8
Q ss_pred cCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEcc
Q 011653 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223 (480)
Q Consensus 144 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 223 (480)
+|+.|++++|.++. + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 44444444444431 1 2344455555555555555432 234555555555555555554444445555555555555
Q ss_pred CccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccC
Q 011653 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 224 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 55555444444555666666666666666555555556666666666666666555555666677777777777777655
Q ss_pred CccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCC
Q 011653 304 PATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (480)
Q Consensus 304 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~ 359 (480)
+..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..++.+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 65667777777777777766543 44567777777777777777666544
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.7e-24 Score=197.29 Aligned_cols=202 Identities=25% Similarity=0.286 Sum_probs=144.1
Q ss_pred CCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCcee
Q 011653 118 KKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLF 197 (480)
Q Consensus 118 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 197 (480)
.+.+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35889999999998 5776543 5799999999999977667899999999999999999976667788999999999
Q ss_pred cccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCC
Q 011653 198 LAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277 (480)
Q Consensus 198 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 277 (480)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999887666677778888888888887776666666777777777777777765554555556666666666665554
Q ss_pred CCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccc
Q 011653 278 TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRL 323 (480)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 323 (480)
..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 4444444455555555555555433333344444444444444443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3.8e-24 Score=197.96 Aligned_cols=206 Identities=23% Similarity=0.188 Sum_probs=128.4
Q ss_pred ccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCC
Q 011653 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLR 242 (480)
Q Consensus 163 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 242 (480)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555555555555555 3333332 455556666665555555555566666666666666553322 14566666
Q ss_pred EEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCcc
Q 011653 243 FLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNR 322 (480)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 322 (480)
.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 355556666666666666666666655666666777777777777765555556667777777777777
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccC
Q 011653 323 LEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 323 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~ 375 (480)
+++..+..+..+++|++|++++|+++ .+|..+.....|+.+++++|++.+.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 77544455666777777777777777 56666666777777777777776543
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.9e-27 Score=241.46 Aligned_cols=358 Identities=14% Similarity=0.081 Sum_probs=254.6
Q ss_pred hhhcCccccceecccccccccC---c-----------hhhhcCCCCCcEEEcccCcceecCCcccc-cCCCCCEEeccCC
Q 011653 11 TIFNMSTLKIIILINNSLSGSL---P-----------SRIGLSLPTVEHLNLALNRFSGTIPSSIT-NASKLTLLELGGN 75 (480)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~~i---p-----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n 75 (480)
.+..+++|+.|+++++.....+ | ..+...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3667899999999998643222 1 12223689999999999999877777776 7999999999998
Q ss_pred -ccccc-CcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCc--ccccCchh-HhhccccCcEEEe
Q 011653 76 -TFSGL-IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNP--LDGFLPSS-IGNLSKSLETLGI 150 (480)
Q Consensus 76 -~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~--l~~~~p~~-~~~~~~~L~~L~l 150 (480)
.+++. ++..+..+++|++|++++|.+++.... .+......+++|++|++++|. ++...... +..+ ++|++|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~-~~L~~L~L 218 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH-WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKL 218 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG-GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC-TTCCEEEC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH-HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC-CCCcEEec
Confidence 55543 344445899999999999998765211 111334578899999999986 33222222 2344 78999999
Q ss_pred ecccCcccCcccccCCCCCCEEEcccc-------cccccCCcCcCCCCCCCce-ecccccccccCCccCCCCCCCCEEEc
Q 011653 151 ANCSISGNIPPAISNLSNLLTLVLEGN-------KLTGPIPTTFGRLQKLQGL-FLAFNKLVGSCPDELCHLDRLDKLVL 222 (480)
Q Consensus 151 ~~n~~~~~~~~~l~~l~~L~~L~l~~n-------~~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (480)
++|.....++..+..+++|++|++..+ .+.+ ++..+.++++|+.+ .+..... +.++..+..+++|++|++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEEC
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEc
Confidence 998433348888889999999996544 3443 33467899999998 4443322 345555557899999999
Q ss_pred cCccccccC-CccCCCCCCCCEEEcCCccccc-cCCccccCCCCCCEEecCC---------CccCCCCCccc-cccccCC
Q 011653 223 LGNKFSGSI-PSCLSNLTSLRFLYLGSNRFTS-VIPSTFWRLKDILFLDFSS---------NLLVGTLSFDI-GNLKVLL 290 (480)
Q Consensus 223 ~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~-~~~~~L~ 290 (480)
++|.+++.. +..+..+++|+.|++++| +.. .++.....+++|+.|++.+ +.+++.....+ ..+++|+
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 999976432 233568899999999988 432 2333334589999999943 34443333333 3489999
Q ss_pred eeecCCccccccCCcccc-CCCCCcEEeCc--C----ccccc-----cCCccccCCCCCCEEEccCCcccccCcccccc-
Q 011653 291 GINLSENNLSGDMPATIG-GLKSLQIMDLA--Y----NRLEG-----QIPESFDDLTSLEVMNLSNNKISGSIPKSMEK- 357 (480)
Q Consensus 291 ~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~- 357 (480)
.|.+..+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+..
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 999999999876666554 58999999999 3 45552 1223366789999999987 666655555655
Q ss_pred CCCCCEEECccCccccc
Q 011653 358 LFYLRELNLSFNELEGE 374 (480)
Q Consensus 358 ~~~L~~l~l~~n~~~~~ 374 (480)
+++|+.+++++|.+++.
T Consensus 455 ~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp CTTCCEEEEESCCSSHH
T ss_pred chhccEeeccCCCCcHH
Confidence 88999999999998643
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.2e-23 Score=194.52 Aligned_cols=201 Identities=23% Similarity=0.181 Sum_probs=96.8
Q ss_pred ccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCC
Q 011653 114 LANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKL 193 (480)
Q Consensus 114 l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 193 (480)
+.++++++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 445555666666665555 3443332 3566666666666655555666666666666666666543221 455555
Q ss_pred CceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCC
Q 011653 194 QGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSN 273 (480)
Q Consensus 194 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 273 (480)
++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 55555555554 34444444455555555555544333344444445555555554444433333444444444444444
Q ss_pred ccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCcc
Q 011653 274 LLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNR 322 (480)
Q Consensus 274 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 322 (480)
.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 444333333333344444444444443 333333333333444443333
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=7e-24 Score=198.62 Aligned_cols=202 Identities=20% Similarity=0.176 Sum_probs=129.6
Q ss_pred CCCCEEEcccccccccCCcCc--CCCCCCCceecccccccccCC----ccCCCCCCCCEEEccCccccccCCccCCCCCC
Q 011653 167 SNLLTLVLEGNKLTGPIPTTF--GRLQKLQGLFLAFNKLVGSCP----DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTS 240 (480)
Q Consensus 167 ~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 240 (480)
++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456666666666666665555 566666666666666655433 23345666777777777766666666666777
Q ss_pred CCEEEcCCcccccc--C--CccccCCCCCCEEecCCCccCCCCC--c-cccccccCCeeecCCccccccCCccccCC---
Q 011653 241 LRFLYLGSNRFTSV--I--PSTFWRLKDILFLDFSSNLLVGTLS--F-DIGNLKVLLGINLSENNLSGDMPATIGGL--- 310 (480)
Q Consensus 241 L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--- 310 (480)
|+.|++++|++.+. + +..+..+++|++|++++|.++.... . .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 77777777765431 1 2233466677777777777752211 1 23566777777777777776666666655
Q ss_pred CCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccc
Q 011653 311 KSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (480)
Q Consensus 311 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~ 373 (480)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..++.|+.+++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 57788888888777 5666554 6788888888887753 33 5666778888888887763
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=8.8e-26 Score=216.29 Aligned_cols=255 Identities=19% Similarity=0.193 Sum_probs=106.0
Q ss_pred ecccccccccCchhhhcCCCCCcEEEcccCcceecCC----cccccCC-CCCEEeccCCcccccCcccccCC-----CCC
Q 011653 22 ILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIP----SSITNAS-KLTLLELGGNTFSGLIPDTIGNL-----RNL 91 (480)
Q Consensus 22 ~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 91 (480)
+++.|.++|.+|..+. ..++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444444444444333 23334444444444443322 3334444 44444444444444434333332 444
Q ss_pred CEEeccCcccCCCCCcccccccccCC-CCCCEEECcCCcccccCchhHhhc----cccCcEEEeecccCccc----Cccc
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANC-KKLRSLNFIGNPLDGFLPSSIGNL----SKSLETLGIANCSISGN----IPPA 162 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p~~~~~~----~~~L~~L~l~~n~~~~~----~~~~ 162 (480)
++|++++|.+++.+. ..+...+..+ ++|++|++++|.+++..+..+... +++|++|++++|.++.. ++..
T Consensus 83 ~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHH-HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 444444444443210 0000112333 445555555555444333333221 13455555555544432 2222
Q ss_pred ccCCC-CCCEEEcccccccccCCcCc----CCC-CCCCceeccccccccc----CCccCCC-CCCCCEEEccCccccccC
Q 011653 163 ISNLS-NLLTLVLEGNKLTGPIPTTF----GRL-QKLQGLFLAFNKLVGS----CPDELCH-LDRLDKLVLLGNKFSGSI 231 (480)
Q Consensus 163 l~~l~-~L~~L~l~~n~~~~~~~~~~----~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~ 231 (480)
+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 23333 55555555555543333222 222 3455555555554431 2222222 234555555555544322
Q ss_pred C----ccCCCCCCCCEEEcCCccccccC-------CccccCCCCCCEEecCCCccCCC
Q 011653 232 P----SCLSNLTSLRFLYLGSNRFTSVI-------PSTFWRLKDILFLDFSSNLLVGT 278 (480)
Q Consensus 232 p----~~l~~l~~L~~L~l~~n~~~~~~-------~~~~~~~~~L~~L~l~~n~l~~~ 278 (480)
+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 1 22344555566666555533221 22333444455555555554433
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6.5e-26 Score=219.38 Aligned_cols=245 Identities=18% Similarity=0.189 Sum_probs=134.0
Q ss_pred cCchhhhcCCCCCcEEEcccCcceecCC----cccccCCCCCEEeccCC---cccccCcccc-------cCCCCCCEEec
Q 011653 31 SLPSRIGLSLPTVEHLNLALNRFSGTIP----SSITNASKLTLLELGGN---TFSGLIPDTI-------GNLRNLAWLGL 96 (480)
Q Consensus 31 ~ip~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n---~l~~~~~~~~-------~~l~~L~~L~l 96 (480)
.++..+. .+++|+.|+|++|.+++..+ ..+.++++|++|+|++| .+++.+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 5666666 67788888888887775433 33567778888888775 4445555444 56777777777
Q ss_pred cCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc------------ccCcEEEeecccCc-ccCc---
Q 011653 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS------------KSLETLGIANCSIS-GNIP--- 160 (480)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~------------~~L~~L~l~~n~~~-~~~~--- 160 (480)
++|.++... ...++..+..+++|++|++++|.++...+..+.... ++|++|++++|.++ ..++
T Consensus 102 s~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHH-HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 777776520 011224566777777777777777644443333321 35666666666665 2233
Q ss_pred ccccCCCCCCEEEccccccc--c---cCCcCcCCCCCCCceeccccccc----ccCCccCCCCCCCCEEEccCcccccc-
Q 011653 161 PAISNLSNLLTLVLEGNKLT--G---PIPTTFGRLQKLQGLFLAFNKLV----GSCPDELCHLDRLDKLVLLGNKFSGS- 230 (480)
Q Consensus 161 ~~l~~l~~L~~L~l~~n~~~--~---~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~- 230 (480)
..+..+++|++|++++|.++ | ..+..+..+++|++|++++|.++ ..+|..+..+++|++|+|++|.+++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 34455666666666666655 1 22334555555555555555553 33444444555555555555554432
Q ss_pred ---CCccC--CCCCCCCEEEcCCccccc----cCCccc-cCCCCCCEEecCCCccCC
Q 011653 231 ---IPSCL--SNLTSLRFLYLGSNRFTS----VIPSTF-WRLKDILFLDFSSNLLVG 277 (480)
Q Consensus 231 ---~p~~l--~~l~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~ 277 (480)
++..+ +.+++|+.|++++|.+++ .+|..+ .++++|+.|++++|.+++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 23333 224444444444444443 233333 233444444444444443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.5e-26 Score=222.28 Aligned_cols=242 Identities=21% Similarity=0.276 Sum_probs=151.7
Q ss_pred ccccCCCCCCEEECcCCcccccCchh----HhhccccCcEEEeecc---cCcccCcccc-------cCCCCCCEEEcccc
Q 011653 112 SSLANCKKLRSLNFIGNPLDGFLPSS----IGNLSKSLETLGIANC---SISGNIPPAI-------SNLSNLLTLVLEGN 177 (480)
Q Consensus 112 ~~l~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~l~~n---~~~~~~~~~l-------~~l~~L~~L~l~~n 177 (480)
..+..+++|++|++++|.++...+.. +..+ ++|++|++++| .+++.+|..+ ..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 45566667777777777666554433 2233 45666666654 3333444433 34555555555555
Q ss_pred cccc----cCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCC---------CCCCEE
Q 011653 178 KLTG----PIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNL---------TSLRFL 244 (480)
Q Consensus 178 ~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l---------~~L~~L 244 (480)
.+++ .+|..+..+++|++|++++|.++...+.. ++..+..+ ++|+.|
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK--------------------IARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH--------------------HHHHHHHHHHHHHHHTCCCCCEE
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH--------------------HHHHHHHHhhhhhcccCCCCcEE
Confidence 5543 23334444444444444444443221111 11112222 667777
Q ss_pred EcCCcccc-ccCC---ccccCCCCCCEEecCCCccCC-----CCCccccccccCCeeecCCcccc----ccCCccccCCC
Q 011653 245 YLGSNRFT-SVIP---STFWRLKDILFLDFSSNLLVG-----TLSFDIGNLKVLLGINLSENNLS----GDMPATIGGLK 311 (480)
Q Consensus 245 ~l~~n~~~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~ 311 (480)
++++|+++ +.++ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++ +.+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 77777765 2333 355567777888888877762 23336677888888888888885 56777788888
Q ss_pred CCcEEeCcCcccccc----CCcccc--CCCCCCEEEccCCcccc----cCcccc-ccCCCCCEEECccCccccc
Q 011653 312 SLQIMDLAYNRLEGQ----IPESFD--DLTSLEVMNLSNNKISG----SIPKSM-EKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 312 ~L~~L~l~~n~l~~~----~p~~~~--~l~~L~~L~l~~n~l~~----~~p~~l-~~~~~L~~l~l~~n~~~~~ 374 (480)
+|+.|+|++|.+++. ++..+. .+++|++|++++|.+++ .+|..+ ..+++|+.+++++|++++.
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 899999999988765 456663 38889999999999887 477777 5578999999999988754
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=197.26 Aligned_cols=226 Identities=20% Similarity=0.207 Sum_probs=179.1
Q ss_pred CCCCEEECcCCcccccCchh---HhhccccCcEEEeecccCcccCcccc--cCCCCCCEEEcccccccccCC----cCcC
Q 011653 118 KKLRSLNFIGNPLDGFLPSS---IGNLSKSLETLGIANCSISGNIPPAI--SNLSNLLTLVLEGNKLTGPIP----TTFG 188 (480)
Q Consensus 118 ~~L~~L~l~~n~l~~~~p~~---~~~~~~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~ 188 (480)
..++.+.+..+.++...-.. .... ++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35677777777665321111 1122 469999999999998888887 889999999999999987555 3445
Q ss_pred CCCCCCceecccccccccCCccCCCCCCCCEEEccCcccccc--C--CccCCCCCCCCEEEcCCcccccc--CCc-cccC
Q 011653 189 RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS--I--PSCLSNLTSLRFLYLGSNRFTSV--IPS-TFWR 261 (480)
Q Consensus 189 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--p~~l~~l~~L~~L~l~~n~~~~~--~~~-~~~~ 261 (480)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++.. .+. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999888888999999999999999987642 2 23346789999999999998632 111 2467
Q ss_pred CCCCCEEecCCCccCCCCCcccccc---ccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCC
Q 011653 262 LKDILFLDFSSNLLVGTLSFDIGNL---KVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLE 338 (480)
Q Consensus 262 ~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 338 (480)
+++|+.|+|++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998888777766 69999999999999 7787764 7999999999999963 44 67889999
Q ss_pred EEEccCCcccc
Q 011653 339 VMNLSNNKISG 349 (480)
Q Consensus 339 ~L~l~~n~l~~ 349 (480)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.5e-25 Score=212.78 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=54.4
Q ss_pred CcEEEcccCcceecCCcccccC--CCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCC
Q 011653 43 VEHLNLALNRFSGTIPSSITNA--SKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL 120 (480)
Q Consensus 43 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L 120 (480)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.. ++..+..+++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~----~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST----LHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH----HHHHHTTBCCC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH----HHHHHhhCCCC
Confidence 445555555443 2333333 4455555555554444333 233444555555444443210 01234444444
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeecc-cCccc-CcccccCCCCCCEEEcccc
Q 011653 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANC-SISGN-IPPAISNLSNLLTLVLEGN 177 (480)
Q Consensus 121 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n 177 (480)
++|++++|.+++..+..+..+ ++|++|++++| .+++. ++..+..+++|++|++++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CEEeCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 444444444444444444443 34444444444 33321 3333444444444444444
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2e-25 Score=213.82 Aligned_cols=250 Identities=18% Similarity=0.163 Sum_probs=125.0
Q ss_pred ECcCCcccccCchhHhhccccCcEEEeecccCcccCc----ccccCCC-CCCEEEcccccccccCCcCcCCC-----CCC
Q 011653 124 NFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP----PAISNLS-NLLTLVLEGNKLTGPIPTTFGRL-----QKL 193 (480)
Q Consensus 124 ~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~-----~~L 193 (480)
+++.|.+++.+|..+... ++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344444444444333332 334444444444443333 3344444 44444444444444333333332 445
Q ss_pred CceecccccccccCCcc----CCCC-CCCCEEEccCccccccCCcc----CCC-CCCCCEEEcCCccccccCC----ccc
Q 011653 194 QGLFLAFNKLVGSCPDE----LCHL-DRLDKLVLLGNKFSGSIPSC----LSN-LTSLRFLYLGSNRFTSVIP----STF 259 (480)
Q Consensus 194 ~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~p~~----l~~-l~~L~~L~l~~n~~~~~~~----~~~ 259 (480)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|+.|++++|.+++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 55555555544433332 2222 45555555555554333322 222 2456666666666554322 222
Q ss_pred cCCC-CCCEEecCCCccCCCCCcccc----cc-ccCCeeecCCcccccc----CCccccC-CCCCcEEeCcCccccccCC
Q 011653 260 WRLK-DILFLDFSSNLLVGTLSFDIG----NL-KVLLGINLSENNLSGD----MPATIGG-LKSLQIMDLAYNRLEGQIP 328 (480)
Q Consensus 260 ~~~~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~p 328 (480)
..++ +|+.|+|++|.+++..+..+. .+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 666666666666555543332 23 4667777777766642 3333433 3467777777777765433
Q ss_pred ----ccccCCCCCCEEEccCCccccc-------CccccccCCCCCEEECccCccccc
Q 011653 329 ----ESFDDLTSLEVMNLSNNKISGS-------IPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 329 ----~~~~~l~~L~~L~l~~n~l~~~-------~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
..+..+++|++|++++|.+.+. ++..+..++.|+.+|+++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2345566777777777774432 223455666677777777776654
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.6e-25 Score=208.83 Aligned_cols=255 Identities=14% Similarity=0.243 Sum_probs=154.7
Q ss_pred CCCEEeccCCcccccCcccccCC--CCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCccccc-CchhHhhcc
Q 011653 66 KLTLLELGGNTFSGLIPDTIGNL--RNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF-LPSSIGNLS 142 (480)
Q Consensus 66 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~p~~~~~~~ 142 (480)
.++.++++++.+. +..+..+ ++++.+++++|.+.+.+ ..+..+++|++|++++|.+++. +|..+..+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~------~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~- 117 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL------AEHFSPFRVQHMDLSNSVIEVSTLHGILSQC- 117 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCC------CSCCCCBCCCEEECTTCEECHHHHHHHHTTB-
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccc------hhhccCCCCCEEEccCCCcCHHHHHHHHhhC-
Confidence 3666777766655 3344455 66777777777666553 2345567777777777766654 55555555
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccc-ccccc-CCcCcCCCCCCCceecccc-ccccc-CCccCCCCC-CC
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGN-KLTGP-IPTTFGRLQKLQGLFLAFN-KLVGS-CPDELCHLD-RL 217 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L 217 (480)
++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 56777777777766666666666777777777776 45542 4445566677777777777 66543 455556666 77
Q ss_pred CEEEccCc--ccc-ccCCccCCCCCCCCEEEcCCcc-ccccCCccccCCCCCCEEecCCCc-cCCCCCccccccccCCee
Q 011653 218 DKLVLLGN--KFS-GSIPSCLSNLTSLRFLYLGSNR-FTSVIPSTFWRLKDILFLDFSSNL-LVGTLSFDIGNLKVLLGI 292 (480)
Q Consensus 218 ~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L 292 (480)
++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 77777776 333 3445555566777777777776 555556666667777777777764 222222245666777777
Q ss_pred ecCCccccccCCccccCCCCCcEEeCcCccccccCCccccC
Q 011653 293 NLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (480)
Q Consensus 293 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 333 (480)
++++| ++...-..+. ..++.|++++|++++..|..++.
T Consensus 278 ~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 278 QVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred eccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 77776 3321111111 23455556777777766665553
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.2e-23 Score=185.77 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=91.7
Q ss_pred cCcEEEeecccCcccCcccccCCCCCCEEEccccc-ccccCCcCcCCCCCCCceeccc-ccccccCCccCCCCCCCCEEE
Q 011653 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK-LTGPIPTTFGRLQKLQGLFLAF-NKLVGSCPDELCHLDRLDKLV 221 (480)
Q Consensus 144 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 221 (480)
+|++|++++|++++..+..+..+++|++|++++|. +++..+..+..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666654444455566666666666664 5544444555666666666665 555544445555556666666
Q ss_pred ccCccccccCCccCCCCCCCC---EEEcCCc-cccccCCccccCCCCCC-EEecCCCccCCCCCccccccccCCeeecCC
Q 011653 222 LLGNKFSGSIPSCLSNLTSLR---FLYLGSN-RFTSVIPSTFWRLKDIL-FLDFSSNLLVGTLSFDIGNLKVLLGINLSE 296 (480)
Q Consensus 222 l~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 296 (480)
+++|.+++ +|. +..+++|+ .|++++| .+++..+..|..+++|+ .|++++|.+....+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66655553 443 45555555 5555555 55544444444555555 5555555444221112222 4444445544
Q ss_pred cc-ccccCCccccCC-CCCcEEeCcCcccc
Q 011653 297 NN-LSGDMPATIGGL-KSLQIMDLAYNRLE 324 (480)
Q Consensus 297 n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~ 324 (480)
|. +++..+..|..+ ++|+.|++++|+++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 443333444444 44455555444444
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.7e-23 Score=185.43 Aligned_cols=204 Identities=16% Similarity=0.232 Sum_probs=174.6
Q ss_pred cCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccccc-ccccCCccCCCCCCCCEEEccC-ccccccCCccC
Q 011653 158 NIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK-LVGSCPDELCHLDRLDKLVLLG-NKFSGSIPSCL 235 (480)
Q Consensus 158 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~l 235 (480)
.+|. +. ++|++|++++|.+++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..+
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5676 43 489999999999998777789999999999999997 8877777899999999999998 99987777788
Q ss_pred CCCCCCCEEEcCCccccccCCccccCCCCCC---EEecCCC-ccCCCCCccccccccCC-eeecCCccccccCCccccCC
Q 011653 236 SNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL---FLDFSSN-LLVGTLSFDIGNLKVLL-GINLSENNLSGDMPATIGGL 310 (480)
Q Consensus 236 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~ 310 (480)
..+++|+.|++++|.+++ +|. +..+++|+ .|++++| .+.+..+..+..+++|+ .|++++|.++ .+|......
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 999999999999999987 665 88888888 9999999 88877777889999999 9999999998 555543334
Q ss_pred CCCcEEeCcCcc-ccccCCccccCC-CCCCEEEccCCcccccCccccccCCCCCEEECccCc
Q 011653 311 KSLQIMDLAYNR-LEGQIPESFDDL-TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNE 370 (480)
Q Consensus 311 ~~L~~L~l~~n~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~ 370 (480)
++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .++.|+.++++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 899999999995 986667789999 999999999999984 5543 57789999988764
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.8e-23 Score=193.15 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=136.7
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEe
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 95 (480)
.++..+.+..+.+.+.++.. .+++|+.|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE 91 (308)
T ss_dssp HHHHHHHTTCSSTTSEECHH---HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred HHHHHHHhCCCCcCceecHH---HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE
Confidence 33444555555555322222 4677888888888776 344 57777888888888887775544 77778888888
Q ss_pred ccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcc
Q 011653 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (480)
Q Consensus 96 l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 175 (480)
+++|.+++. ..+..+++|++|++++|.+++ ++. +..+ ++|++|++++|.+++. +. +..+++|++|+++
T Consensus 92 L~~n~l~~~-------~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l-~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 92 LSGNPLKNV-------SAIAGLQSIKTLDLTSTQITD-VTP-LAGL-SNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG 159 (308)
T ss_dssp CCSCCCSCC-------GGGTTCTTCCEEECTTSCCCC-CGG-GTTC-TTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred ccCCcCCCc-------hhhcCCCCCCEEECCCCCCCC-chh-hcCC-CCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence 888877664 356777777778777777764 332 5555 5677777777777643 22 6677777777777
Q ss_pred cccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccc
Q 011653 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (480)
Q Consensus 176 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 253 (480)
+|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 777764322 6666777777777766654322 555666666666666665433 25556666666666666553
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5e-22 Score=180.03 Aligned_cols=180 Identities=23% Similarity=0.241 Sum_probs=93.7
Q ss_pred CCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcC
Q 011653 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (480)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 247 (480)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666665 3444332 455666666666655555555555555555555555555444445555555555555
Q ss_pred CccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccC
Q 011653 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (480)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 327 (480)
+|++++..+..+..+++|+.|+|++|.+.+..+. .+..+++|+.|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG------------------------VFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------TTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChh------------------------HhccCCcccEEECcCCcCCccC
Confidence 5555544444444455555555555544444333 3444555555555555555433
Q ss_pred CccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccccc
Q 011653 328 PESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 328 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
+..+..+++|++|++++|.+++..+..+..++.|+.+++++|++.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 33455555555555555555544444455555555555555555443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4e-22 Score=180.69 Aligned_cols=181 Identities=25% Similarity=0.298 Sum_probs=155.7
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEc
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (480)
...++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46789999999988 6777665 69999999999999988889999999999999999999988888999999999999
Q ss_pred cCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcccccc
Q 011653 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD 302 (480)
Q Consensus 223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 302 (480)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999987778889999999999999999987777788899999999999988876666677777777777777777766
Q ss_pred CCccccCCCCCcEEeCcCcccccc
Q 011653 303 MPATIGGLKSLQIMDLAYNRLEGQ 326 (480)
Q Consensus 303 ~~~~~~~~~~L~~L~l~~n~l~~~ 326 (480)
.+..+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 566677777777777777777643
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.5e-22 Score=187.63 Aligned_cols=196 Identities=24% Similarity=0.384 Sum_probs=170.9
Q ss_pred hhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCC
Q 011653 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (480)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 90 (480)
...++++|++|++++|.+. .+| .+. .+++|+.|++++|.+++ ++. +.++++|++|++++|.+++. ..+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred cHHHcCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 3567899999999999998 677 466 79999999999999985 454 99999999999999999864 36899999
Q ss_pred CCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 170 (480)
|+.|++++|.+++.+ .+..+++|++|++++|.+++..+ +..+ ++|++|++++|.+++ ++. +..+++|+
T Consensus 109 L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 176 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT-------PLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSD-LTP-LANLSKLT 176 (308)
T ss_dssp CCEEECTTSCCCCCG-------GGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred CCEEECCCCCCCCch-------hhcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence 999999999998763 48899999999999999985443 7777 789999999999985 444 89999999
Q ss_pred EEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccc
Q 011653 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG 229 (480)
Q Consensus 171 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 229 (480)
+|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 99999999986543 889999999999999998665 38899999999999999974
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.8e-21 Score=171.08 Aligned_cols=158 Identities=24% Similarity=0.205 Sum_probs=66.6
Q ss_pred CCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcC
Q 011653 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (480)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 247 (480)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333333444444444444444443333333444444444444
Q ss_pred CccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccC
Q 011653 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (480)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 327 (480)
+|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+. +.+++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 44444333333344444444444444444333333344444444444444332 12334444444444444444
Q ss_pred Ccccc
Q 011653 328 PESFD 332 (480)
Q Consensus 328 p~~~~ 332 (480)
|..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.5e-21 Score=168.01 Aligned_cols=181 Identities=22% Similarity=0.222 Sum_probs=127.2
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccc
Q 011653 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (480)
Q Consensus 121 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 200 (480)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555555554 334332 24577777777777655555566777777777777777765555667777777777777
Q ss_pred ccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCC
Q 011653 201 NKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS 280 (480)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 280 (480)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 77776555666777778888888777776655567777888888888888877666667778888888888887653
Q ss_pred ccccccccCCeeecCCccccccCCccccCCCC
Q 011653 281 FDIGNLKVLLGINLSENNLSGDMPATIGGLKS 312 (480)
Q Consensus 281 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 312 (480)
.++.|++|+++.|.++|.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3467888888888888888887776654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.6e-21 Score=191.28 Aligned_cols=185 Identities=24% Similarity=0.303 Sum_probs=92.8
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceec
Q 011653 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFL 198 (480)
Q Consensus 119 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 198 (480)
+|+.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 56666666666654 454332 35666666666665 444 334566666666666654 444 333 5666666
Q ss_pred ccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCC
Q 011653 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278 (480)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 278 (480)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 6665554 333 34555555555555553 343 34455555555555554 333 33 55555555555554 2
Q ss_pred CCccccccccC-------CeeecCCccccccCCccccCCCCCcEEeCcCccccccCCcccc
Q 011653 279 LSFDIGNLKVL-------LGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFD 332 (480)
Q Consensus 279 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 332 (480)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|++++.+|..+.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 332 222 33 44444444444 3444444444444444444444444444433
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.1e-20 Score=177.89 Aligned_cols=239 Identities=20% Similarity=0.240 Sum_probs=128.1
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCC-cCcCCCCCCCc-eec
Q 011653 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQG-LFL 198 (480)
Q Consensus 121 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~-L~l 198 (480)
++++.+++.++ .+|..+ ++++++|+|++|+++..-+..|.++++|++|+|++|.+.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34455555554 445433 2356666666666653333345666666666666666554443 34555555554 334
Q ss_pred ccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCC-ccccccCCccccCCC-CCCEEecCCCccC
Q 011653 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS-NRFTSVIPSTFWRLK-DILFLDFSSNLLV 276 (480)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~ 276 (480)
..|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +++....+..|..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 44556555555666666666666666666544444444445555566544 344433334444433 4566666666665
Q ss_pred CCCCccccccccCCeeecCC-ccccccCC-ccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccc
Q 011653 277 GTLSFDIGNLKVLLGINLSE-NNLSGDMP-ATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKS 354 (480)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 354 (480)
.. +.......+|+++++++ |.++ .+| ..|..+++|+.|++++|+++ .+|.. .+.+|+.|.+.++.--..+| .
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-C
T ss_pred CC-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-C
Confidence 33 33333445666666654 4444 444 35566677777777777766 33331 23455555555544333555 3
Q ss_pred cccCCCCCEEECccC
Q 011653 355 MEKLFYLRELNLSFN 369 (480)
Q Consensus 355 l~~~~~L~~l~l~~n 369 (480)
+..+++|+.+++.++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 566667777776543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.3e-20 Score=179.35 Aligned_cols=81 Identities=15% Similarity=-0.056 Sum_probs=36.2
Q ss_pred EEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceeccc-ccccccCCccCCCCC-CCCEEEccCc
Q 011653 148 LGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF-NKLVGSCPDELCHLD-RLDKLVLLGN 225 (480)
Q Consensus 148 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n 225 (480)
+.+..|+++...|..|..+++|++|++++|.+.+..+..+....++..+++.+ +.+....+..+..+. .++.|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 33344455544444555555555555555555544443444444444455433 233322222333332 3444444444
Q ss_pred ccc
Q 011653 226 KFS 228 (480)
Q Consensus 226 ~l~ 228 (480)
.++
T Consensus 165 ~i~ 167 (350)
T 4ay9_X 165 GIQ 167 (350)
T ss_dssp CCC
T ss_pred ccc
Confidence 444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.3e-20 Score=186.90 Aligned_cols=188 Identities=22% Similarity=0.307 Sum_probs=162.0
Q ss_pred cCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEcc
Q 011653 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223 (480)
Q Consensus 144 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 223 (480)
+|+.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 787664 79999999999999 567 468999999999999997 776 654 99999999
Q ss_pred CccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccC
Q 011653 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (480)
Q Consensus 224 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 303 (480)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999986 676 68999999999999987 665 57899999999999987 555 55 89999999999999 77
Q ss_pred CccccCCCCC-------cEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCC
Q 011653 304 PATIGGLKSL-------QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (480)
Q Consensus 304 ~~~~~~~~~L-------~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~ 359 (480)
|. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77 654 77 99999999999 6898888899999999999999999998877654
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.8e-20 Score=188.31 Aligned_cols=193 Identities=28% Similarity=0.422 Sum_probs=145.0
Q ss_pred CccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEE
Q 011653 15 MSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWL 94 (480)
Q Consensus 15 ~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 94 (480)
+.++..+.+..+.+.+.++. . .+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+++..+ +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~--~-~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ--N-ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH--H-HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccch--h-cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 34566667777776633332 2 5788888888888887 444 57888888888888888887654 7788888888
Q ss_pred eccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEc
Q 011653 95 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVL 174 (480)
Q Consensus 95 ~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 174 (480)
+|++|.+++. ..+..+++|+.|++++|.+.+ + ..+..+ ++|+.|+|++|.+++. ..+..+++|+.|+|
T Consensus 93 ~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 93 FLDENKIKDL-------SSLKDLKKLKSLSLEHNGISD-I-NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp ECCSSCCCCC-------TTSTTCTTCCEEECTTSCCCC-C-GGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred ECcCCCCCCC-------hhhccCCCCCEEEecCCCCCC-C-ccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 8888888765 457788888888888888874 3 346666 6788888888888754 56778888888888
Q ss_pred ccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCcccccc
Q 011653 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS 230 (480)
Q Consensus 175 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 230 (480)
++|.+++..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8888886655 77888888888888888753 3577788888888888887654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.4e-19 Score=183.15 Aligned_cols=177 Identities=25% Similarity=0.366 Sum_probs=154.7
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
+..+++|+.|++++|.+. .+| .+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. +.+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 568899999999999998 676 466 79999999999999986443 89999999999999999863 368999999
Q ss_pred CEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCE
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLT 171 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 171 (480)
+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+.+..| +..+++|+.
T Consensus 112 ~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp CEEECTTSCCCCC-------GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CEEEecCCCCCCC-------ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 9999999999875 5688999999999999999864 567777 789999999999997655 899999999
Q ss_pred EEcccccccccCCcCcCCCCCCCceecccccccccCCc
Q 011653 172 LVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPD 209 (480)
Q Consensus 172 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 209 (480)
|+|++|.+++. ..+..+++|+.|+|++|.+.+....
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 99999999864 4589999999999999999865433
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.2e-20 Score=171.75 Aligned_cols=190 Identities=29% Similarity=0.421 Sum_probs=131.5
Q ss_pred ccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEe
Q 011653 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (480)
Q Consensus 16 ~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 95 (480)
.++..+.+..+.+.+..+. . .+++|+.|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 24 ~~~~~~~l~~~~~~~~~~~--~-~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQ--N-ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHTTCSCTTSEECH--H-HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHhcCCCcccccch--h-hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 3445556666666532222 2 4678888888888886 343 47778888888888888876544 77888888888
Q ss_pred ccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcc
Q 011653 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (480)
Q Consensus 96 l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 175 (480)
+++|.+++. ..+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++. +.+..+++|++|+++
T Consensus 97 l~~n~l~~~-------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 97 LDENKVKDL-------SSLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (291)
T ss_dssp CCSSCCCCG-------GGGTTCTTCCEEECTTSCCCCC--GGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCCcCCCC-------hhhccCCCCCEEECCCCcCCCC--hhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence 888887764 3477788888888888887742 345665 5788888887777643 567777777777777
Q ss_pred cccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCcccc
Q 011653 176 GNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFS 228 (480)
Q Consensus 176 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 228 (480)
+|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 165 DNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 777775443 66777777777777776642 2 3566666666666666665
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=157.89 Aligned_cols=135 Identities=26% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCEEEcCCccccccCC-ccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCc
Q 011653 241 LRFLYLGSNRFTSVIP-STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLA 319 (480)
Q Consensus 241 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 319 (480)
++.|++++|++++..+ ..|..+++|+.|+|++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3444444444444322 234444555555555555544444445555555555555555554444445555555555555
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccC
Q 011653 320 YNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 320 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~ 375 (480)
+|++++..|..+..+++|++|++++|.+++..|..+..+++|+.+++++|++.+.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 55555555555555555555555555555555555555555555555555555543
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.5e-19 Score=167.13 Aligned_cols=173 Identities=25% Similarity=0.366 Sum_probs=151.5
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
+..+++|+.|++++|.+. .++. +. .+++|+.|++++|.+++. +. +.++++|++|++++|.+++. +.+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 567899999999999998 6764 55 799999999999999854 44 99999999999999999863 348999999
Q ss_pred CEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCE
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLT 171 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 171 (480)
+.|++++|.+++. ..+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++..+ +..+++|++
T Consensus 115 ~~L~L~~n~i~~~-------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp CEEECTTSCCCCC-------GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CEEECCCCcCCCC-------hhhcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCccccchh--hcCCCccCE
Confidence 9999999999875 5688999999999999999864 567777 789999999999986544 899999999
Q ss_pred EEcccccccccCCcCcCCCCCCCceecccccccc
Q 011653 172 LVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG 205 (480)
Q Consensus 172 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 205 (480)
|++++|.+++. + .+..+++|+.|++++|.+..
T Consensus 183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99999999864 4 48999999999999999875
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=4.9e-19 Score=156.59 Aligned_cols=153 Identities=22% Similarity=0.299 Sum_probs=89.8
Q ss_pred EEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcc
Q 011653 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENN 298 (480)
Q Consensus 219 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 298 (480)
.++.+++.++ .+|..+. ++++.|++++|++.+..+..|..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444443 3333322 345555555555555444455555555555555555555555555566666666666666
Q ss_pred ccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccccc
Q 011653 299 LSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 299 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
+++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|.+++..+..+..++.|+.+++++|++.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6643344456666666666666666665566666666666666666666655555666666677777777766654
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=4.3e-19 Score=169.54 Aligned_cols=176 Identities=22% Similarity=0.220 Sum_probs=105.4
Q ss_pred CEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCC-CCCCCCEEEccCccccccCCccCCCCCCCCEEEcCC
Q 011653 170 LTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC-HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (480)
Q Consensus 170 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 248 (480)
+.++++++.++ .+|..+. +.++.|++++|++++..+..+. .+++|++|+|++|.+++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777776 3454332 3466777777777666666665 667777777777776665556666666777777777
Q ss_pred ccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccc---cCCCCCcEEeCcCccccc
Q 011653 249 NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATI---GGLKSLQIMDLAYNRLEG 325 (480)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~ 325 (480)
|++.+..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66666555556666666666666666665555556666666666666666653222223 345566666666666654
Q ss_pred cCCccccCCCC--CCEEEccCCccc
Q 011653 326 QIPESFDDLTS--LEVMNLSNNKIS 348 (480)
Q Consensus 326 ~~p~~~~~l~~--L~~L~l~~n~l~ 348 (480)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 33344444444 255566665554
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.5e-18 Score=154.49 Aligned_cols=154 Identities=23% Similarity=0.276 Sum_probs=91.6
Q ss_pred EEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcc
Q 011653 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENN 298 (480)
Q Consensus 219 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 298 (480)
.++.+++.+. .+|..+. ++|+.|++++|.+.+..|..|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4444444443 3343322 455555555555555555555555566666666666554444445566666666666666
Q ss_pred ccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCcccccCC
Q 011653 299 LSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (480)
Q Consensus 299 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~p 376 (480)
+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..+..++.|+.+++++|++.+.++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 66544455566666666666666666 566666666677777777776665555556666677777777777665543
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=154.21 Aligned_cols=135 Identities=23% Similarity=0.267 Sum_probs=86.8
Q ss_pred CCEEEccCccccccCC-ccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecC
Q 011653 217 LDKLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLS 295 (480)
Q Consensus 217 L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 295 (480)
+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|.+.+..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555554433 234555666666666666665555556666666666666666666655566666677777777
Q ss_pred CccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccC
Q 011653 296 ENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351 (480)
Q Consensus 296 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 351 (480)
+|.+++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.+..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 77777666666777777777777777777666777777777777777777776543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.7e-18 Score=153.08 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=28.4
Q ss_pred cccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCccc
Q 011653 284 GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 284 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 348 (480)
..+++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 33344444444444444333344444444444444444444333334444444444444444443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=2e-21 Score=195.49 Aligned_cols=218 Identities=21% Similarity=0.140 Sum_probs=137.0
Q ss_pred ccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCC
Q 011653 114 LANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKL 193 (480)
Q Consensus 114 l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 193 (480)
+..+++|+.|++++|.++ .+|..++.+ ++|+.|++++|......|..+ ..+...+.+|..++.+++|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhc
Confidence 456777777888877776 677777777 577777775543111111110 1122344556666667777
Q ss_pred Ccee-cccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCC
Q 011653 194 QGLF-LAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS 272 (480)
Q Consensus 194 ~~L~-l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 272 (480)
+.|+ ++.|.+. +|..+.+++|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|+|++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH 472 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS
T ss_pred ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCc
Confidence 7776 5554432 23344455555543211 136667777777765 454 66777777777777
Q ss_pred CccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccC-CccccCCCCCCEEEccCCcccccC
Q 011653 273 NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI-PESFDDLTSLEVMNLSNNKISGSI 351 (480)
Q Consensus 273 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~ 351 (480)
|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.+++|+.|++++|++++..
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7776 566677777777777777777774 55 6777777777777777777665 777777777888888877777654
Q ss_pred ccc---cccCCCCCEEEC
Q 011653 352 PKS---MEKLFYLRELNL 366 (480)
Q Consensus 352 p~~---l~~~~~L~~l~l 366 (480)
|.. +..++.|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 422 233677777653
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=7.5e-19 Score=167.88 Aligned_cols=177 Identities=24% Similarity=0.204 Sum_probs=150.2
Q ss_pred CcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcC-CCCCCCceecccccccccCCccCCCCCCCCEEEcc
Q 011653 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFG-RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223 (480)
Q Consensus 145 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 223 (480)
-++++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 468899998888 5777654 4689999999999988788787 89999999999999998888889999999999999
Q ss_pred CccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccc---cccccCCeeecCCcccc
Q 011653 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDI---GNLKVLLGINLSENNLS 300 (480)
Q Consensus 224 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~ 300 (480)
+|.+++..+..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|.+.+..+..+ ..+++|+.|+|++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987777788999999999999999998888899999999999999999987655555 56899999999999998
Q ss_pred ccCCccccCCCC--CcEEeCcCcccc
Q 011653 301 GDMPATIGGLKS--LQIMDLAYNRLE 324 (480)
Q Consensus 301 ~~~~~~~~~~~~--L~~L~l~~n~l~ 324 (480)
+..+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 555566777776 488999999876
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.2e-18 Score=151.06 Aligned_cols=136 Identities=27% Similarity=0.324 Sum_probs=89.5
Q ss_pred CCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeec
Q 011653 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINL 294 (480)
Q Consensus 215 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 294 (480)
++|++|++++|.+++..|..+..+++|+.|++++|++....+..|..+++|+.|+|++|.+++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55555666666555555555566666666666666665444455556666666666666666555555666677777777
Q ss_pred CCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccC
Q 011653 295 SENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351 (480)
Q Consensus 295 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 351 (480)
++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777776 66666777777777777777777555566777777777888777776543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=158.80 Aligned_cols=170 Identities=26% Similarity=0.278 Sum_probs=122.4
Q ss_pred cCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCE
Q 011653 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (480)
Q Consensus 14 ~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 93 (480)
++.++..++++.+.++ .++ .+. .+++|+.|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 5667888888888887 566 344 6889999999999887 555 68888899999999988886644 888888999
Q ss_pred EeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEE
Q 011653 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (480)
Q Consensus 94 L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 173 (480)
|++++|.+++.+. +.. ++|++|++++|.+++ ++ .+..+ ++|++|++++|++++. + .+..+++|++|+
T Consensus 90 L~L~~N~l~~l~~-------~~~-~~L~~L~L~~N~l~~-~~-~l~~l-~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 90 LSVNRNRLKNLNG-------IPS-ACLSRLFLDNNELRD-TD-SLIHL-KNLEILSIRNNKLKSI-V-MLGFLSKLEVLD 156 (263)
T ss_dssp EECCSSCCSCCTT-------CCC-SSCCEEECCSSCCSB-SG-GGTTC-TTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred EECCCCccCCcCc-------ccc-CcccEEEccCCccCC-Ch-hhcCc-ccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence 9998888887642 222 778888888887774 33 45555 5677777777777643 3 566677777777
Q ss_pred cccccccccCCcCcCCCCCCCceecccccccc
Q 011653 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG 205 (480)
Q Consensus 174 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 205 (480)
+++|.+++. ..+..+++|+.|++++|.+..
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 777776654 446666666666666666653
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.6e-18 Score=150.76 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=71.9
Q ss_pred cCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCE
Q 011653 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRF 243 (480)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 243 (480)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34445555555555554 233 3455555555555555332 2234445555555555555555444555555555555
Q ss_pred EEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccc
Q 011653 244 LYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRL 323 (480)
Q Consensus 244 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 323 (480)
|++++|.+++..+..+..+++|+.|++++|...+.++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 5555555554444445555555555555554222222 23444444444444444432 22 333444444444444443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.4e-20 Score=189.34 Aligned_cols=122 Identities=25% Similarity=0.300 Sum_probs=96.9
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceec
Q 011653 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFL 198 (480)
Q Consensus 119 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 198 (480)
.|+.|++++|.+++ +|. ++.+ ++|++|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 47888888888885 665 7776 67888888888888 778888888888888888888886 56 6888888888888
Q ss_pred ccccccccC-CccCCCCCCCCEEEccCccccccCCcc---CCCCCCCCEEEc
Q 011653 199 AFNKLVGSC-PDELCHLDRLDKLVLLGNKFSGSIPSC---LSNLTSLRFLYL 246 (480)
Q Consensus 199 ~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~L~l 246 (480)
++|.+++.. |..+..+++|+.|+|++|.+++..|.. +..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888776 888888888888888888888654432 223678888764
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=6.2e-18 Score=146.97 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=94.8
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEc
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (480)
++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45666666666665 444 46666666666666665442 235666666666666666666656666666667777777
Q ss_pred cCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCcccc
Q 011653 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS 300 (480)
Q Consensus 223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 300 (480)
++|.+++..|..+..+++|+.|++++|...+.++ .+..+++|+.|++++|.+.+.. .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 7776666566666667777777777776222343 5666777777777777776532 5666777777777777765
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=8.1e-18 Score=153.06 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=132.9
Q ss_pred hhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCC
Q 011653 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (480)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 90 (480)
.+..+++|++|++++|.++ .+| .+. .+++|+.|++++|.+++ ++. +.++++|++|++++|.+++. |. +.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNL-NG-IPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCC-TT-CCC-SS
T ss_pred chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCc-Cc-ccc-Cc
Confidence 5889999999999999998 788 566 79999999999999985 444 99999999999999999874 33 333 99
Q ss_pred CCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 170 (480)
|+.|++++|.+++. ..+..+++|++|++++|.+++. + .+..+ ++|++|++++|.+++. ..+..+++|+
T Consensus 108 L~~L~L~~N~l~~~-------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 108 LSRLFLDNNELRDT-------DSLIHLKNLEILSIRNNKLKSI-V-MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CCEEECCSSCCSBS-------GGGTTCTTCCEEECTTSCCCBC-G-GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred ccEEEccCCccCCC-------hhhcCcccccEEECCCCcCCCC-h-HHccC-CCCCEEECCCCcCcch--HHhccCCCCC
Confidence 99999999999875 4688999999999999999854 4 67777 7899999999999865 6789999999
Q ss_pred EEEccccccccc
Q 011653 171 TLVLEGNKLTGP 182 (480)
Q Consensus 171 ~L~l~~n~~~~~ 182 (480)
.|++++|.+++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 999999999865
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=2.1e-18 Score=162.65 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=42.9
Q ss_pred CCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCc-EEeCcCccccccCCccccCCCCCCEEE
Q 011653 263 KDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQ-IMDLAYNRLEGQIPESFDDLTSLEVMN 341 (480)
Q Consensus 263 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~ 341 (480)
++|+.++|++|.+.......|..+++|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++..-+.+|.+|++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 34444444444443333333444444444444443 3323333444444444 444444 33323334444444444444
Q ss_pred ccCCcccccCccccccCCCCCEE
Q 011653 342 LSNNKISGSIPKSMEKLFYLREL 364 (480)
Q Consensus 342 l~~n~l~~~~p~~l~~~~~L~~l 364 (480)
+++|.+....+..|.++++|+.+
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEE
T ss_pred eCCCccCccchhhhcCCcchhhh
Confidence 44444443333444444444444
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.1e-18 Score=181.02 Aligned_cols=181 Identities=22% Similarity=0.243 Sum_probs=98.9
Q ss_pred cCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCC
Q 011653 158 NIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSN 237 (480)
Q Consensus 158 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~ 237 (480)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34566667777777777777776 55655667777777777777777 66777777777777777777777 66777777
Q ss_pred CCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCcccccccc-CCeeecCCccccccCCccccCCCCCcEE
Q 011653 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKV-LLGINLSENNLSGDMPATIGGLKSLQIM 316 (480)
Q Consensus 238 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L 316 (480)
+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 777777777777775 56666777777777777777777777666544322 223667777777766653 3445
Q ss_pred eCcCc--------cccccCCccccCCCCCCEEEccCCccc
Q 011653 317 DLAYN--------RLEGQIPESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 317 ~l~~n--------~l~~~~p~~~~~l~~L~~L~l~~n~l~ 348 (480)
+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 55554 233333344455555666666666664
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.8e-17 Score=156.27 Aligned_cols=102 Identities=16% Similarity=0.022 Sum_probs=62.2
Q ss_pred CCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCC-EEEcCCccccccCCccccCCCCCCEE
Q 011653 190 LQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLR-FLYLGSNRFTSVIPSTFWRLKDILFL 268 (480)
Q Consensus 190 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L 268 (480)
|++|+.+++++|+++...+..|.+|++|+++++.+| +...-+..|.++.+|+ .+++.+ +++...+..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 556666666666655444455666666666666655 4444445566666666 666665 4554455666666666666
Q ss_pred ecCCCccCCCCCccccccccCCeee
Q 011653 269 DFSSNLLVGTLSFDIGNLKVLLGIN 293 (480)
Q Consensus 269 ~l~~n~l~~~~~~~~~~~~~L~~L~ 293 (480)
+++.|.+....+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666655566666666666654
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=3.4e-18 Score=177.47 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=108.9
Q ss_pred cchhhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccC
Q 011653 8 VSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGN 87 (480)
Q Consensus 8 ~~~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 87 (480)
.|..+..+++|+.|+|++|.+. .+|..++ .+++|+.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3566777888888888888887 7888777 7888888888888887 77888888888888888888887 56777888
Q ss_pred CCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCC
Q 011653 88 LRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLS 167 (480)
Q Consensus 88 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 167 (480)
+++|++|+|++|.++..| ..|.++++|++|+|++|.+++.+|..+......+..+++++|.+++.+|..
T Consensus 292 l~~L~~L~L~~N~l~~lp------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~----- 360 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLP------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE----- 360 (727)
T ss_dssp GTTCSEEECCSSCCCCCC------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred CCCCCEEECCCCCCCccC------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-----
Confidence 888888888888887655 557788888888888888887777777654333345677788877777654
Q ss_pred CCCEEEcccc--------cccccCCcCcCCCCCCCceeccccccc
Q 011653 168 NLLTLVLEGN--------KLTGPIPTTFGRLQKLQGLFLAFNKLV 204 (480)
Q Consensus 168 ~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~~~ 204 (480)
|+.|+++.| .+.+..+..+..+..++...++.|.+.
T Consensus 361 -l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 -RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------------CCC
T ss_pred -cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 334455554 233333333444555555555555543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=9.9e-17 Score=138.57 Aligned_cols=111 Identities=30% Similarity=0.350 Sum_probs=55.2
Q ss_pred CCCEEecCCCccCCCCCc-cccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEc
Q 011653 264 DILFLDFSSNLLVGTLSF-DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL 342 (480)
Q Consensus 264 ~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 342 (480)
+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444444433332 2444455555555555555444445555555555555555555444444555555555555
Q ss_pred cCCcccccCccccccCCCCCEEECccCccccc
Q 011653 343 SNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 343 ~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
++|++++..|..+..+++|+.+++++|++.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 55555555555555555555555555555544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.2e-16 Score=136.44 Aligned_cols=132 Identities=23% Similarity=0.319 Sum_probs=81.5
Q ss_pred CEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCc-cccCCCCCCEEecCCCccCCCCCccccccccCCeeecCC
Q 011653 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPS-TFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSE 296 (480)
Q Consensus 218 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 296 (480)
+.++++++.++ .+|..+.. +++.|++++|.+.+..+. .+..+++|+.|+|++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34555555553 44443322 566666666666554443 355666666666666666666666666666666666666
Q ss_pred ccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCc
Q 011653 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352 (480)
Q Consensus 297 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 352 (480)
|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66666666666666777777777777766666666667777777777777665443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.6e-16 Score=134.31 Aligned_cols=132 Identities=25% Similarity=0.264 Sum_probs=63.0
Q ss_pred CCCCEEEccCcccc-ccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeee
Q 011653 215 DRLDKLVLLGNKFS-GSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293 (480)
Q Consensus 215 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 293 (480)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44455555555544 44444444555555555555554433 4444445555555555555444444444445555555
Q ss_pred cCCcccccc-CCccccCCCCCcEEeCcCccccccCC---ccccCCCCCCEEEccCCccc
Q 011653 294 LSENNLSGD-MPATIGGLKSLQIMDLAYNRLEGQIP---ESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 294 l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~n~l~ 348 (480)
+++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555554431 11344445555555555555543322 24444555555555555443
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=5.4e-15 Score=142.90 Aligned_cols=315 Identities=15% Similarity=0.095 Sum_probs=180.3
Q ss_pred cCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccc
Q 011653 31 SLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSF 110 (480)
Q Consensus 31 ~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 110 (480)
+|....+..|.+|+.+.+.. .++..-..+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +.....
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~---- 133 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV---- 133 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT----
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc----
Confidence 56665555777888888753 355444557777888888888654 55455566777777777766543 222211
Q ss_pred cccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCC
Q 011653 111 LSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRL 190 (480)
Q Consensus 111 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 190 (480)
..|.++..++......... .-...+..+ ++|+.+.+.++. ...-...|..+.+|+.+++..+ ++.....++.++
T Consensus 134 -~aF~~~~~~~~~~~~~~~~--i~~~aF~~c-~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 134 -EAFKGCDFKEITIPEGVTV--IGDEAFATC-ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp -TTTTTCCCSEEECCTTCCE--ECTTTTTTC-TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred -eeeecccccccccCccccc--cchhhhccc-CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 4455554333332222211 122344454 567777776543 2234455667777777777655 333444567777
Q ss_pred CCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEec
Q 011653 191 QKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270 (480)
Q Consensus 191 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 270 (480)
..|+.+.+..+... +.+....+..|+.+.+.... +......+..+..++.+.+..+... .....|..+..++.+.+
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceecc
Confidence 77777776654332 22333445667777665432 2223345566677777777655332 33455666666666666
Q ss_pred CCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCccccc
Q 011653 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350 (480)
Q Consensus 271 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 350 (480)
..+.+. ...+..+.+|+.+.+.++ ++.....+|.+|++|+.+++..+ ++..-..+|.++.+|+.+++..+ ++..
T Consensus 284 ~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 284 GSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp CSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred Cceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 554322 223556667777766544 44344556677777777777543 44333556777777777777655 4434
Q ss_pred CccccccCCCCCEEECcc
Q 011653 351 IPKSMEKLFYLRELNLSF 368 (480)
Q Consensus 351 ~p~~l~~~~~L~~l~l~~ 368 (480)
-...|.++.+|+.+++..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 445666777777776653
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=8.3e-15 Score=141.02 Aligned_cols=267 Identities=10% Similarity=0.092 Sum_probs=179.7
Q ss_pred cCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhcc
Q 011653 63 NASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS 142 (480)
Q Consensus 63 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 142 (480)
.+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++..+. .+|.++ +|+.+.+.. .+...-+..|..+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~-----~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c- 179 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD-----MAFFNS-TVQEIVFPS-TLEQLKEDIFYYC- 179 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECT-----TTTTTC-CCCEEECCT-TCCEECSSTTTTC-
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECH-----HhcCCC-CceEEEeCC-CccEehHHHhhCc-
Confidence 346677777764 3555555666664 5777777655 444322 455554 577777765 4443334455555
Q ss_pred ccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEc
Q 011653 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (480)
Q Consensus 143 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (480)
.+|+.+++..|.++. ++.....+.+|+.+.+..+ ++.....+|.+|++|+.+++..+ ++..-...|.. .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 577777777777763 3433334677888887743 55455667778888888888764 33334455555 67888888
Q ss_pred cCccccccCCccCCCCCCCCEEEcCCcccc-----ccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCc
Q 011653 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFT-----SVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297 (480)
Q Consensus 223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 297 (480)
. +.++..-...|..|++|+.+++.++.+. ...+..|..|++|+.+++.+ .+.......|..+++|+.+.|..+
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 4 3455455667788888888888776654 34456788888888888884 466566677888889999998655
Q ss_pred cccccCCccccCCCCCcEEeCcCccccccCCccccCCC-CCCEEEccCCccc
Q 011653 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLT-SLEVMNLSNNKIS 348 (480)
Q Consensus 298 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~ 348 (480)
++.....+|.+| +|+.+++++|.+....+..|..++ +++.|.+..+.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 665566788888 999999999987765666777774 6888888776543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.5e-16 Score=131.57 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=54.7
Q ss_pred CCCEEEccCcccc-ccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeec
Q 011653 216 RLDKLVLLGNKFS-GSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINL 294 (480)
Q Consensus 216 ~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 294 (480)
+|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 34444444444444444444444432 33444444444444444444433433334444444444
Q ss_pred CCcccccc-CCccccCCCCCcEEeCcCccccccCC---ccccCCCCCCEEEc
Q 011653 295 SENNLSGD-MPATIGGLKSLQIMDLAYNRLEGQIP---ESFDDLTSLEVMNL 342 (480)
Q Consensus 295 ~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l 342 (480)
++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 44444431 22334444444444444444443322 23444444444444
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.1e-16 Score=133.60 Aligned_cols=83 Identities=28% Similarity=0.330 Sum_probs=34.0
Q ss_pred CCCCEEEccccccc-ccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEE
Q 011653 167 SNLLTLVLEGNKLT-GPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245 (480)
Q Consensus 167 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 245 (480)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 33444444444444444444444322 3333334444444444443333333333333334444
Q ss_pred cCCccc
Q 011653 246 LGSNRF 251 (480)
Q Consensus 246 l~~n~~ 251 (480)
+++|.+
T Consensus 102 Ls~N~l 107 (168)
T 2ell_A 102 LSGNKL 107 (168)
T ss_dssp CBSSSC
T ss_pred ccCCcc
Confidence 433333
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=7.6e-15 Score=141.28 Aligned_cols=266 Identities=15% Similarity=0.077 Sum_probs=177.8
Q ss_pred CccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEE
Q 011653 15 MSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWL 94 (480)
Q Consensus 15 ~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 94 (480)
+..++.+.+.+. ++ .|+...+..+ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .++.....+|.+|.+|+.+
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 455666665543 33 5666655443 6888887655 554445566664 588888875 5666666777888888888
Q ss_pred eccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEc
Q 011653 95 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVL 174 (480)
Q Consensus 95 ~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 174 (480)
++..|.++..+. ..|. +.+|+.+.+..+ +...-...|..+ ++|+.+++..+ ++..-..+|.+ .+|+.+.+
T Consensus 186 ~l~~n~l~~I~~-----~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 186 DLSKTKITKLPA-----STFV-YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp ECTTSCCSEECT-----TTTT-TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ecCCCcceEech-----hhEe-ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 888777776643 3344 577888888744 443334455555 67888888764 44333444555 67888888
Q ss_pred ccccccccCCcCcCCCCCCCceeccccccc-----ccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCc
Q 011653 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLV-----GSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSN 249 (480)
Q Consensus 175 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 249 (480)
. +.++.....+|.+|++|+.+++.++.+. ...+..|..|++|+.+.+.+ .+...-...|.+|++|+.+.+..+
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 4 4455455677888888888888776654 24456778888888888874 465555667888888888888654
Q ss_pred cccccCCccccCCCCCCEEecCCCccCCCCCcccccc-ccCCeeecCCcccc
Q 011653 250 RFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNL-KVLLGINLSENNLS 300 (480)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~ 300 (480)
+...-...|.++ +|+.+++.+|.+.......|..+ ..++.+++..+.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 555556778888 88888888887776666666666 36778888776543
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.2e-16 Score=130.51 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=115.9
Q ss_pred CCCCCCEEEcCCcccc-ccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcE
Q 011653 237 NLTSLRFLYLGSNRFT-SVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQI 315 (480)
Q Consensus 237 ~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 315 (480)
..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999998 78898889999999999999999876 67889999999999999999878888888999999
Q ss_pred EeCcCcccccc-CCccccCCCCCCEEEccCCcccccCc---cccccCCCCCEEECcc
Q 011653 316 MDLAYNRLEGQ-IPESFDDLTSLEVMNLSNNKISGSIP---KSMEKLFYLRELNLSF 368 (480)
Q Consensus 316 L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~~~~L~~l~l~~ 368 (480)
|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.+++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999863 45789999999999999999997666 5788999999998763
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.7e-15 Score=129.44 Aligned_cols=111 Identities=29% Similarity=0.358 Sum_probs=65.2
Q ss_pred CCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEcc
Q 011653 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343 (480)
Q Consensus 264 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 343 (480)
+|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555554 334455555556666666666655445556666666666666666665555556666666666666
Q ss_pred CCcccccCccccccCCCCCEEECccCcccccC
Q 011653 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (480)
Q Consensus 344 ~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~~ 375 (480)
+|.++...+..+..++.|+.+++++|++.+.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 66666444445556666666666666665543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.3e-15 Score=127.26 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=56.5
Q ss_pred CCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEcc
Q 011653 264 DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLS 343 (480)
Q Consensus 264 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 343 (480)
+|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444444333344445555555555555553333344555555555555555554444445555555555555
Q ss_pred CCcccccCccccccCCCCCEEECccCccccc
Q 011653 344 NNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 344 ~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
+|.+++..+..+..++.|+.+++++|++.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 5555543333344555555555555555544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=5.8e-15 Score=125.75 Aligned_cols=132 Identities=26% Similarity=0.261 Sum_probs=90.4
Q ss_pred CEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCc
Q 011653 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297 (480)
Q Consensus 218 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 297 (480)
+.++++++.++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555554 334322 246677777777766655555666777777777777776665556677777777788777
Q ss_pred cccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCc
Q 011653 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352 (480)
Q Consensus 298 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 352 (480)
.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7776556667778888888888888875555556778888888888888876554
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=127.33 Aligned_cols=128 Identities=26% Similarity=0.388 Sum_probs=92.9
Q ss_pred CEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCc
Q 011653 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297 (480)
Q Consensus 218 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 297 (480)
+.++++++.++ .+|..+. ++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35556666555 4454332 46777777777776 45667777777777777777777776677777788888888888
Q ss_pred cccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccc
Q 011653 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISG 349 (480)
Q Consensus 298 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 349 (480)
.+++..+..|..+++|+.|+|++|.++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8877666778888888888888888886555567788888888888888764
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=1.7e-13 Score=132.35 Aligned_cols=328 Identities=9% Similarity=0.041 Sum_probs=215.7
Q ss_pred hhhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCC
Q 011653 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (480)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 90 (480)
+|.+|++|+.+.+..+ ++ .|++..+..|++|+.+++..+ ++..-..++.+|.+|+.+.+..+ +......+|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 4778888888888643 55 777776667888888888654 54344567788888888877754 44445566666654
Q ss_pred CCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCC
Q 011653 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (480)
Q Consensus 91 L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 170 (480)
++..........+. ..|.+|.+|+.+.+..+... .-...+..+ .+|+.+.+..+ ++..-...+.++..|+
T Consensus 142 ~~~~~~~~~~~i~~-------~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 142 KEITIPEGVTVIGD-------EAFATCESLEYVSLPDSMET-LHNGLFSGC-GKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp SEEECCTTCCEECT-------TTTTTCTTCCEEECCTTCCE-ECTTTTTTC-TTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred cccccCccccccch-------hhhcccCCCcEEecCCccce-eccccccCC-CCceEEEcCCC-ceEeCchhhccccccc
Confidence 43333332222111 56888888888888765332 223344454 67888888765 4434456677888888
Q ss_pred EEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCcc
Q 011653 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250 (480)
Q Consensus 171 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 250 (480)
.+.+..+... +.+....+.+|+.+.+.... .......+..+..++.+.+..+... .....+..+..++.+....+.
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred eeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 8877765432 23334456678887776432 2233456777888888888766443 445567778888888776654
Q ss_pred ccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCcc
Q 011653 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330 (480)
Q Consensus 251 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 330 (480)
+. ...|..+.+|+.+.+.++ +......+|..+.+|+.+++.++ ++.....+|.+|.+|+.+++..+ ++..-..+
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 32 346677888888888754 44455566788888888888654 55445677888888888888766 55445667
Q ss_pred ccCCCCCCEEEccCCcccccCccccccCCCCCEE
Q 011653 331 FDDLTSLEVMNLSNNKISGSIPKSMEKLFYLREL 364 (480)
Q Consensus 331 ~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l 364 (480)
|.+|.+|+.+++..+ +. .+...+.++++|+.+
T Consensus 362 F~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 888888888888654 22 234566666666543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=8e-17 Score=140.03 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=68.6
Q ss_pred ccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchhHh
Q 011653 60 SITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIG 139 (480)
Q Consensus 60 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~ 139 (480)
.+.++++|++|++++|.+++ +| .+..+++|+.|++++|.++..| ..+..+++|++|++++|.+++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~------~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIE------NLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCS------SHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccccc------chhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 44444555555555554443 23 4444555555555555554333 333444555555555555553 33 455
Q ss_pred hccccCcEEEeecccCcccCc-ccccCCCCCCEEEcccccccccCCcC----------cCCCCCCCcee
Q 011653 140 NLSKSLETLGIANCSISGNIP-PAISNLSNLLTLVLEGNKLTGPIPTT----------FGRLQKLQGLF 197 (480)
Q Consensus 140 ~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~----------~~~~~~L~~L~ 197 (480)
.+ ++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|+
T Consensus 113 ~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 54 466666666666653211 35666677777777777666554432 56667777665
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.7e-15 Score=125.65 Aligned_cols=133 Identities=18% Similarity=0.189 Sum_probs=70.2
Q ss_pred hhcCccccceecccccccccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
+.++++|+.|++++|.++ .+|. +....++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445566666666666665 4543 221233666666666666543 455566666666666666665443434556666
Q ss_pred CEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCchh----HhhccccCcEEEeeccc
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSS----IGNLSKSLETLGIANCS 154 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~l~~n~ 154 (480)
++|++++|.++..+. ...+..+++|++|++++|.+. .+|.. +..+ ++|++|+++.|.
T Consensus 91 ~~L~L~~N~i~~~~~----~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l-~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGD----LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV-PQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGG----GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC-TTCSEETTEECC
T ss_pred CEEECCCCcCCcchh----hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC-CccceeCCCcCC
Confidence 666666666544331 024555555566666555554 33332 3343 345555544443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=8.3e-17 Score=139.93 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=98.4
Q ss_pred hhcCccccceecccccccccCch------hhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccc
Q 011653 12 IFNMSTLKIIILINNSLSGSLPS------RIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTI 85 (480)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~~ip~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 85 (480)
+.....++.++++.+.+.|.+|. .+. .+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 44556667777777777666665 555 57777777777777764 55 6667777777777777766 345555
Q ss_pred cCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCc-hhHhhccccCcEEEeecccCcccCccc--
Q 011653 86 GNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPA-- 162 (480)
Q Consensus 86 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~l~~n~~~~~~~~~-- 162 (480)
..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+.+..|..
T Consensus 90 ~~~~~L~~L~L~~N~l~~l-------~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL-------SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH-------HHHHHHHHSSEEEESEEECCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTT
T ss_pred hcCCcCCEEECcCCcCCcC-------CccccCCCCCEEECCCCcCCchhHHHHHhcC-CCCCEEEecCCccccccccccc
Confidence 5666777777777776654 245666677777777776663221 345555 56777777777666554432
Q ss_pred --------ccCCCCCCEEEccccccc
Q 011653 163 --------ISNLSNLLTLVLEGNKLT 180 (480)
Q Consensus 163 --------l~~l~~L~~L~l~~n~~~ 180 (480)
+..+++|+.|+ ++.++
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hHHHHHHHHHhCCCcEEEC--CcccC
Confidence 56667777665 44444
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.1e-14 Score=123.83 Aligned_cols=132 Identities=20% Similarity=0.158 Sum_probs=80.9
Q ss_pred CCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcE
Q 011653 236 SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQI 315 (480)
Q Consensus 236 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 315 (480)
..+.+|+.|++++|+++. ++......++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344555555555555553 232222223566666666666543 35566667777777777776443344466777777
Q ss_pred EeCcCccccccCCc--cccCCCCCCEEEccCCcccccCccc----cccCCCCCEEECccCccc
Q 011653 316 MDLAYNRLEGQIPE--SFDDLTSLEVMNLSNNKISGSIPKS----MEKLFYLRELNLSFNELE 372 (480)
Q Consensus 316 L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~~~~L~~l~l~~n~~~ 372 (480)
|++++|.++ .+|. .+..+++|++|++++|+++ .+|.. +..++.|+.+|++.|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777775 4454 6667777777777777776 44543 667777777777777654
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=8.2e-12 Score=120.53 Aligned_cols=321 Identities=10% Similarity=0.091 Sum_probs=171.9
Q ss_pred cCchhhhcCCC-CCcEEEcccCcceecCCcccccCCCCCEEeccCCc---ccccCcccccCCCCCCEEeccCcccCCCCC
Q 011653 31 SLPSRIGLSLP-TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNT---FSGLIPDTIGNLRNLAWLGLAYNNLTSSTS 106 (480)
Q Consensus 31 ~ip~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 106 (480)
+|++..+..++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++..+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34444443443 3666666432 443444556666666666665442 44344455666666666555433 222211
Q ss_pred cccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcC
Q 011653 107 KLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTT 186 (480)
Q Consensus 107 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 186 (480)
..|..|.+|+.+.+..+. ...-...+..+ ..|+.+.+..+ ++..-..+| ....|+.+.+..+... ....+
T Consensus 131 -----~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c-~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~-i~~~a 200 (394)
T 4gt6_A 131 -----EAFHHCEELDTVTIPEGV-TSVADGMFSYC-YSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTR-IGTNA 200 (394)
T ss_dssp -----TTTTTCTTCCEEECCTTC-CEECTTTTTTC-TTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCE-ECTTT
T ss_pred -----hhhhhhccccccccccee-eeecccceecc-cccccccccce-eeEeccccc-cccceeEEEECCcccc-cccch
Confidence 455666666666665432 21122223333 45666665543 221222222 3345666666543222 33345
Q ss_pred cCCCCCCCceecccccccccCC-------------ccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccc
Q 011653 187 FGRLQKLQGLFLAFNKLVGSCP-------------DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (480)
Q Consensus 187 ~~~~~~L~~L~l~~n~~~~~~~-------------~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 253 (480)
+..|.+++......+......- ..+.....+..+.+.. .+...-...|..+.+|+.+.+..+.. .
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~ 278 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-S 278 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-E
T ss_pred hhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-e
Confidence 5556665555544332211000 0111223344444432 23333445677888888888876533 2
Q ss_pred cCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccC
Q 011653 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (480)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 333 (480)
.....|.+++.|+.+.+.. .+.......|..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.+
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 4456777888888888863 454455567788888998888764 55455678889999999998654 55344568889
Q ss_pred CCCCCEEEccCCcccccCccccccCCCCCEEECccCcc
Q 011653 334 LTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNEL 371 (480)
Q Consensus 334 l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~ 371 (480)
|.+|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 9999999998876442 3566777888887765543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.7e-13 Score=113.50 Aligned_cols=88 Identities=23% Similarity=0.270 Sum_probs=42.0
Q ss_pred ccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEEC
Q 011653 287 KVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNL 366 (480)
Q Consensus 287 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l 366 (480)
++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444445555555555544333334444555555555555554433334444555555555
Q ss_pred ccCccccc
Q 011653 367 SFNELEGE 374 (480)
Q Consensus 367 ~~n~~~~~ 374 (480)
++|++.+.
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 55555443
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=2.6e-11 Score=117.06 Aligned_cols=295 Identities=11% Similarity=0.122 Sum_probs=136.5
Q ss_pred cccccCC-CCCEEeccCCcccccCcccccCCCCCCEEeccCcc---cCCCCCcccccccccCCCCCCEEECcCCcccccC
Q 011653 59 SSITNAS-KLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN---LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFL 134 (480)
Q Consensus 59 ~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 134 (480)
.+|.++. .|+.+.+..+ ++.+-..+|.+|.+|+.+.+..|. ++..+. .+|.+|.+|+.+.+..+ ++..-
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~-----~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR-----QAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT-----TTTTTCTTCCBCGGGTT-CSEEC
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech-----hhchhcccceeeccCCc-cceeh
Confidence 3455553 4666666543 444445556666666666665543 222211 44556666665555443 22122
Q ss_pred chhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCC
Q 011653 135 PSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHL 214 (480)
Q Consensus 135 p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 214 (480)
...+..+ .+|+.+.+..+ +...-...+..+..|+.+.+..+ ++..-..+|. ...|+.+.+..+.. ......+..+
T Consensus 130 ~~aF~~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp TTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhhhh-cccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhc
Confidence 2233333 45666666533 22233345555666666666543 2222223343 23455555544322 1223445555
Q ss_pred CCCCEEEccCccccccCC-------------ccCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCc
Q 011653 215 DRLDKLVLLGNKFSGSIP-------------SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281 (480)
Q Consensus 215 ~~L~~L~l~~n~l~~~~p-------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 281 (480)
.++............... ..+.....+..+.+.. .+...-...|..+..|+.+.+.++.. .....
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~ 282 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTG 282 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCc
Confidence 555555444332210000 0011112233333322 12222334555566666666654322 23333
Q ss_pred cccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCC
Q 011653 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYL 361 (480)
Q Consensus 282 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L 361 (480)
.+.+++.|+.+.+.. .++.....+|.+|.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++..-...|.++.+|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 455566666666642 333233445666666666666543 33233445666666666666433 332334455666666
Q ss_pred CEEECccCc
Q 011653 362 RELNLSFNE 370 (480)
Q Consensus 362 ~~l~l~~n~ 370 (480)
+.+++.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 666665543
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=8e-13 Score=111.41 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=71.0
Q ss_pred CCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcC
Q 011653 241 LRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY 320 (480)
Q Consensus 241 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 320 (480)
.+.+++++|.++. +|..+. ++|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4556666666553 444432 5566666666666666666666677777777777777755555567777777777777
Q ss_pred ccccccCCccccCCCCCCEEEccCCccccc
Q 011653 321 NRLEGQIPESFDDLTSLEVMNLSNNKISGS 350 (480)
Q Consensus 321 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 350 (480)
|++++..+..|..+++|++|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777765555677777777777777777643
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.2e-12 Score=110.81 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=48.9
Q ss_pred ccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEEC
Q 011653 287 KVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNL 366 (480)
Q Consensus 287 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l 366 (480)
++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45555555555555444555555555555666555555433344455566666666666665444444555666666666
Q ss_pred ccCccccc
Q 011653 367 SFNELEGE 374 (480)
Q Consensus 367 ~~n~~~~~ 374 (480)
++|++.+.
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 66665543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2e-12 Score=109.28 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=46.1
Q ss_pred cEEEeecccCcccCcccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccCc
Q 011653 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN 225 (480)
Q Consensus 146 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 225 (480)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 3444332 44555555555555444444444445555555544444333333344444444444444
Q ss_pred cccccCCccCCCCCCCCEEEcCCccc
Q 011653 226 KFSGSIPSCLSNLTSLRFLYLGSNRF 251 (480)
Q Consensus 226 ~l~~~~p~~l~~l~~L~~L~l~~n~~ 251 (480)
.+++..+..+..+++|+.|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 44432222344444444444444443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1.4e-13 Score=131.22 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=41.0
Q ss_pred ccCCeeecCCcccccc----CCccccCCCCCcEEeCcCcccccc----CCccccCCCCCCEEEccCCccccc----Cccc
Q 011653 287 KVLLGINLSENNLSGD----MPATIGGLKSLQIMDLAYNRLEGQ----IPESFDDLTSLEVMNLSNNKISGS----IPKS 354 (480)
Q Consensus 287 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~ 354 (480)
++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555555431 222334455555555555555432 133344445555555555555432 2223
Q ss_pred cccCCCCCEEECccCccc
Q 011653 355 MEKLFYLRELNLSFNELE 372 (480)
Q Consensus 355 l~~~~~L~~l~l~~n~~~ 372 (480)
+...+.|+.+++++|++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 334455555555555554
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.24 E-value=2.4e-09 Score=102.71 Aligned_cols=301 Identities=10% Similarity=0.060 Sum_probs=181.4
Q ss_pred CCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCCCEEeccCcccCCCCCcccccccccCCC
Q 011653 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (480)
Q Consensus 39 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~ 118 (480)
...+|+.+.+. ..++..-..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.... ..|..+
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~-----~aF~~~- 113 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGD-----YVFQGT- 113 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECT-----TTTTTC-
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecc-----ceeccC-
Confidence 34567777774 3455444556777778888877643 555555667666 5666666543 222221 344443
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccccCCCCCCEEEcccccccc------------cCCcC
Q 011653 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTG------------PIPTT 186 (480)
Q Consensus 119 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~ 186 (480)
+|+.+.+..+... .-...+.. .+|+.+.+..+ ++..-...+..+.+++.+.+..+.... .....
T Consensus 114 ~L~~i~lp~~~~~-i~~~~F~~--~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 DLDDFEFPGATTE-IGNYIFYN--SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CCSEEECCTTCCE-ECTTTTTT--CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred CcccccCCCcccc-cccccccc--ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 6777777654222 22222333 24666655543 333444556677777777666543211 11122
Q ss_pred cCCCCCCCceecccccccccCCccCCCCCCCCEEEccCccccccCCccCCCCCCCCEEEcCCccccccCCccccCCCCCC
Q 011653 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL 266 (480)
Q Consensus 187 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 266 (480)
+..+..+..+.+..... ......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...|..+..|+
T Consensus 190 ~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 33445555555443321 233445666778888877654 33344456777888888888765 4444556777888888
Q ss_pred EEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCc
Q 011653 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (480)
Q Consensus 267 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 346 (480)
.+.+..+ +.......|..+++|+.+.+.++.++.....+|.+|.+|+.+++..+ ++..-..+|.++.+|+.+.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 8888654 44444556778888998888888777556678888999999998654 55344567888888988888654
Q ss_pred ccccCccccccCC
Q 011653 347 ISGSIPKSMEKLF 359 (480)
Q Consensus 347 l~~~~p~~l~~~~ 359 (480)
++..-..+|.++.
T Consensus 344 v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 ITLIESGAFEGSS 356 (379)
T ss_dssp CCEECTTTTTTSS
T ss_pred cCEEchhHhhCCC
Confidence 4433344555553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=3.3e-11 Score=114.25 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=89.6
Q ss_pred CEEEcCCc-cccccCCccccCCCCCCEEecCC-CccCCCCCccccccccCCeeecCCccccccCCccccCCCCCcEEeCc
Q 011653 242 RFLYLGSN-RFTSVIPSTFWRLKDILFLDFSS-NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLA 319 (480)
Q Consensus 242 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 319 (480)
..++.+++ .+++ +|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688887 7875 777 88899999999996 99988888889999999999999999998888889999999999999
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccc
Q 011653 320 YNRLEGQIPESFDDLTSLEVMNLSNNKISG 349 (480)
Q Consensus 320 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 349 (480)
+|++++..+..+..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999966666666665 9999999998874
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=3.9e-11 Score=113.77 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=93.7
Q ss_pred cCccccceecccc-cccccCchhhhcCCCCCcEEEccc-CcceecCCcccccCCCCCEEeccCCcccccCcccccCCCCC
Q 011653 14 NMSTLKIIILINN-SLSGSLPSRIGLSLPTVEHLNLAL-NRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (480)
Q Consensus 14 ~~~~L~~L~l~~~-~~~~~ip~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 91 (480)
.|.. ..++.+++ .++ .||. +. .+++|+.|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|
T Consensus 7 ~C~~-~~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 7 PHGS-SGLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp CSSS-SCEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred cccC-CEEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence 3443 35788888 888 7999 77 899999999996 99998777889999999999999999999999999999999
Q ss_pred CEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccC
Q 011653 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFL 134 (480)
Q Consensus 92 ~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 134 (480)
+.|+|++|++++.|. ..+..++ |+.|++.+|.+....
T Consensus 83 ~~L~l~~N~l~~~~~-----~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 83 SRLNLSFNALESLSW-----KTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp CEEECCSSCCSCCCS-----TTTCSCC-CCEEECCSSCCCCCG
T ss_pred CEEeCCCCccceeCH-----HHcccCC-ceEEEeeCCCccCCC
Confidence 999999999998863 3444444 999999999987544
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=2.3e-13 Score=129.60 Aligned_cols=142 Identities=17% Similarity=0.115 Sum_probs=72.2
Q ss_pred CCCCEEECcCCcccccCchhHhhccccCcEEEeecccCcccCcccc-----cCCCCCCEEEcccccccccCCcCcCCCCC
Q 011653 118 KKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAI-----SNLSNLLTLVLEGNKLTGPIPTTFGRLQK 192 (480)
Q Consensus 118 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 192 (480)
++|++|++++|.++......+....++|++|+|++|.++......+ ...++|++|+|++|.++.....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~------- 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA------- 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH-------
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH-------
Confidence 4566666666665543333333222456666666665543322222 1244555555555555421100
Q ss_pred CCceecccccccccCCccCCCCCCCCEEEccCccccc----cCCccCCCCCCCCEEEcCCcccccc----CCccccCCCC
Q 011653 193 LQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG----SIPSCLSNLTSLRFLYLGSNRFTSV----IPSTFWRLKD 264 (480)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~ 264 (480)
.++..+..+++|++|+|++|.+.. .++..+...++|+.|++++|.+++. ++..+...++
T Consensus 174 -------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~ 240 (372)
T 3un9_A 174 -------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240 (372)
T ss_dssp -------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS
T ss_pred -------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC
Confidence 112222334445555555554432 1233445556677777777776542 3344445677
Q ss_pred CCEEecCCCccCCCC
Q 011653 265 ILFLDFSSNLLVGTL 279 (480)
Q Consensus 265 L~~L~l~~n~l~~~~ 279 (480)
|+.|+|++|.++...
T Consensus 241 L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 241 LELLHLYFNELSSEG 255 (372)
T ss_dssp CCEEECTTSSCCHHH
T ss_pred CCEEeccCCCCCHHH
Confidence 888888888876443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=7.3e-09 Score=99.30 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=58.1
Q ss_pred cCCCCCCCCEEEcCCccccccCCccccCCCCCCEEecCCCccCCCCCccccccccCCeeecCCccccccCCccccCCCCC
Q 011653 234 CLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSL 313 (480)
Q Consensus 234 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 313 (480)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +.......+..+..|+.+.+..+ +......+|..|++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444455555555432 22222334445555555555443 32233334444555555555432 222233345555555
Q ss_pred cEEeCcCccccccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEEC
Q 011653 314 QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNL 366 (480)
Q Consensus 314 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l 366 (480)
+.+.+.++.++..-..+|.++.+|+.+.+.++ ++..-...|.++.+|+.+++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55555555444333445555555555555433 33222334555555555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=1.2e-10 Score=109.96 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=81.1
Q ss_pred hhhcCccccceeccccccc---------ccCchhhhcCCCCCcEEEcccCcceecCCcccccCCCCCEEeccCCcccccC
Q 011653 11 TIFNMSTLKIIILINNSLS---------GSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLI 81 (480)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~---------~~ip~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 81 (480)
++..+++|+.|.+....+. +.++..+. .+|+|+.|++++|.-. .++. + .+++|++|++..+.+....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~-~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD-AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH-TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHh-cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 3445667777766543221 12333344 5677777777665211 2222 2 2566777777766655433
Q ss_pred ccccc--CCCCCCEEeccC--cccCCCCCcccccccc--cCCCCCCEEECcCCcccccCchhHhh--ccccCcEEEeecc
Q 011653 82 PDTIG--NLRNLAWLGLAY--NNLTSSTSKLSFLSSL--ANCKKLRSLNFIGNPLDGFLPSSIGN--LSKSLETLGIANC 153 (480)
Q Consensus 82 ~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~p~~~~~--~~~~L~~L~l~~n 153 (480)
...+. .+++|+.|+|+. +...+......+...+ ..+++|++|++.+|.+.+..+..+.. ..++|++|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 33333 566777776642 2211111000000111 24566666666666665443333332 1245666666666
Q ss_pred cCccc----CcccccCCCCCCEEEccccccc
Q 011653 154 SISGN----IPPAISNLSNLLTLVLEGNKLT 180 (480)
Q Consensus 154 ~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 180 (480)
.+... ++..+..+++|+.|++++|.++
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 55542 2223334556666666655554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.2e-10 Score=110.06 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=47.3
Q ss_pred cccCCeeecCCccccccCCccc---cCCCCCcEEeCcCcccccc----CCccccCCCCCCEEEccCCcccccCcccccc-
Q 011653 286 LKVLLGINLSENNLSGDMPATI---GGLKSLQIMDLAYNRLEGQ----IPESFDDLTSLEVMNLSNNKISGSIPKSMEK- 357 (480)
Q Consensus 286 ~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~- 357 (480)
+++|+.|++.+|.+.+..+..+ ..+++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 5666666666666654322222 2356777777777777653 2333345677777788777766443333332
Q ss_pred CCCCCEEECccCc
Q 011653 358 LFYLRELNLSFNE 370 (480)
Q Consensus 358 ~~~L~~l~l~~n~ 370 (480)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456776665
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=1e-08 Score=91.77 Aligned_cols=69 Identities=28% Similarity=0.303 Sum_probs=42.7
Q ss_pred ccCCCCCEEeccCCcccc--cCcccccCCCCCCEEeccCcccCCCCCcccccccccCCCCCCEEECcCCcccccCc
Q 011653 62 TNASKLTLLELGGNTFSG--LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP 135 (480)
Q Consensus 62 ~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p 135 (480)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++... +..+..+ +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~----l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE----LDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG----GGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh----hhhcccC-CcceEEccCCcCccccC
Confidence 456777777777777766 334555567777777777777765411 1223333 67777777777765544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2.9e-08 Score=84.49 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=53.4
Q ss_pred cccccCCeeecCCcccccc----CCccccCCCCCcEEeCcCcccccc----CCccccCCCCCCEEEc--cCCccccc---
Q 011653 284 GNLKVLLGINLSENNLSGD----MPATIGGLKSLQIMDLAYNRLEGQ----IPESFDDLTSLEVMNL--SNNKISGS--- 350 (480)
Q Consensus 284 ~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~n~l~~~--- 350 (480)
...++|++|+|++|.+... +...+...++|++|+|++|.+++. +...+...++|++|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3345555666666655432 223344456677777777776643 3445556667777777 66777643
Q ss_pred -CccccccCCCCCEEECccCccc
Q 011653 351 -IPKSMEKLFYLRELNLSFNELE 372 (480)
Q Consensus 351 -~p~~l~~~~~L~~l~l~~n~~~ 372 (480)
+...+...+.|+.+++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555677888888877764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=2.7e-08 Score=84.64 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=64.0
Q ss_pred CCCCCCCEEEcCCc-ccccc----CCccccCCCCCCEEecCCCccCCCC----CccccccccCCeeecCCcccccc----
Q 011653 236 SNLTSLRFLYLGSN-RFTSV----IPSTFWRLKDILFLDFSSNLLVGTL----SFDIGNLKVLLGINLSENNLSGD---- 302 (480)
Q Consensus 236 ~~l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~---- 302 (480)
...++|++|++++| .+... +...+...++|+.|+|++|.+.... ...+...++|++|+|++|.+++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33444555555554 44321 2233334455555666665554322 22234446677777777776542
Q ss_pred CCccccCCCCCcEEeC--cCcccccc----CCccccCCCCCCEEEccCCccc
Q 011653 303 MPATIGGLKSLQIMDL--AYNRLEGQ----IPESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 303 ~~~~~~~~~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 348 (480)
+...+...++|++|+| ++|.++.. +...+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677888888 77777654 2334455677888888888765
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=2.5e-07 Score=82.73 Aligned_cols=118 Identities=22% Similarity=0.251 Sum_probs=80.9
Q ss_pred ccccchh-hhcCccccc--eecccccccccCch---hhhcCCCCCcEEEcccCccee--cCCcccccCCCCCEEeccCCc
Q 011653 5 VGMVSAT-IFNMSTLKI--IILINNSLSGSLPS---RIGLSLPTVEHLNLALNRFSG--TIPSSITNASKLTLLELGGNT 76 (480)
Q Consensus 5 ~g~~~~~-~~~~~~L~~--L~l~~~~~~~~ip~---~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~ 76 (480)
++.++-+ +...+.|+. ++++.|... .++. .+...+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.
T Consensus 129 ~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 129 QQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp TTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred ccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 3334333 556666766 677777432 2222 122368999999999999987 566778899999999999999
Q ss_pred ccccCcccccCCC--CCCEEeccCcccCCC-CCc-ccccccccCCCCCCEEEC
Q 011653 77 FSGLIPDTIGNLR--NLAWLGLAYNNLTSS-TSK-LSFLSSLANCKKLRSLNF 125 (480)
Q Consensus 77 l~~~~~~~~~~l~--~L~~L~l~~n~l~~~-~~~-~~~~~~l~~~~~L~~L~l 125 (480)
+++. ..+..+. +|++|++.+|.+.+. +.. ......+..+|+|+.||=
T Consensus 208 i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 208 LKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9876 3344444 899999999998763 210 001134678899998873
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=7.3e-07 Score=73.83 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=15.5
Q ss_pred CCcEEeCcCcc-ccccCCccccCCCCCCEEEccCC
Q 011653 312 SLQIMDLAYNR-LEGQIPESFDDLTSLEVMNLSNN 345 (480)
Q Consensus 312 ~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n 345 (480)
+|++|+|++|. +++.--..+..+++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 44555554443 44333333444455555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=1.1e-06 Score=72.74 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=67.0
Q ss_pred ccCCeeecCCccccccCCccccCCCCCcEEeCcCcc-ccccCCccccCC----CCCCEEEccCCc-ccccCccccccCCC
Q 011653 287 KVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNR-LEGQIPESFDDL----TSLEVMNLSNNK-ISGSIPKSMEKLFY 360 (480)
Q Consensus 287 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~l~~~~~ 360 (480)
..|+.|++++|.++...-..+..|++|+.|+|++|. +++.--..++.+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888888877666667889999999999995 776555556654 479999999985 77655566788999
Q ss_pred CCEEECccCc
Q 011653 361 LRELNLSFNE 370 (480)
Q Consensus 361 L~~l~l~~n~ 370 (480)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=7.4e-05 Score=63.01 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=59.8
Q ss_pred CCCCCEEecCCC-ccCCC----CCccccccccCCeeecCCccccccC----CccccCCCCCcEEeCcCcccccc----CC
Q 011653 262 LKDILFLDFSSN-LLVGT----LSFDIGNLKVLLGINLSENNLSGDM----PATIGGLKSLQIMDLAYNRLEGQ----IP 328 (480)
Q Consensus 262 ~~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~p 328 (480)
-+.|+.|+|++| .+... +...+..-+.|+.|+|++|.+.... ...+..-+.|+.|+|+.|.+++. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555553 33221 2223344456666666666665432 22333456777777777777643 22
Q ss_pred ccccCCCCCCEEEccCC---cccc----cCccccccCCCCCEEECccCc
Q 011653 329 ESFDDLTSLEVMNLSNN---KISG----SIPKSMEKLFYLRELNLSFNE 370 (480)
Q Consensus 329 ~~~~~l~~L~~L~l~~n---~l~~----~~p~~l~~~~~L~~l~l~~n~ 370 (480)
+.+..-..|++|+|++| .+.. .+...+...+.|+.++++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34445566888888754 2221 233456666778888876543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=9.8e-05 Score=62.27 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=61.4
Q ss_pred CCCCCEEEcCCc-ccccc----CCccccCCCCCCEEecCCCccCCCC----CccccccccCCeeecCCcccccc----CC
Q 011653 238 LTSLRFLYLGSN-RFTSV----IPSTFWRLKDILFLDFSSNLLVGTL----SFDIGNLKVLLGINLSENNLSGD----MP 304 (480)
Q Consensus 238 l~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~ 304 (480)
-+.|+.|+|++| ++... +.+.+..-..|+.|+|++|.+.... ...+..-+.|+.|+|+.|.|++. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555553 44321 2233444455666666666664322 22334456777777777777642 33
Q ss_pred ccccCCCCCcEEeCcCc---ccccc----CCccccCCCCCCEEEccCCcc
Q 011653 305 ATIGGLKSLQIMDLAYN---RLEGQ----IPESFDDLTSLEVMNLSNNKI 347 (480)
Q Consensus 305 ~~~~~~~~L~~L~l~~n---~l~~~----~p~~~~~l~~L~~L~l~~n~l 347 (480)
.++..-+.|+.|+|++| .+... +...+..-++|+.|+++.|..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 44555667888888754 33322 333455567788888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0036 Score=49.10 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=29.5
Q ss_pred EEeCcCcccc-ccCCccccCCCCCCEEEccCCcccccCccccccCCCCCEEECccCccccc
Q 011653 315 IMDLAYNRLE-GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (480)
Q Consensus 315 ~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~~~~L~~l~l~~n~~~~~ 374 (480)
.++.+++.++ ..+|..+. ++|++|+|++|.++..-+..|..++.|+.+++.+|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 4444555443 23343322 2455556666655544444455556666666666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0051 Score=48.24 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=37.8
Q ss_pred eeecCCcccc-ccCCccccCCCCCcEEeCcCccccccCCccccCCCCCCEEEccCCccc
Q 011653 291 GINLSENNLS-GDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (480)
Q Consensus 291 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 348 (480)
.++.+++.++ ..+|..+. ++|+.|+|++|+++..-+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666664 24554332 36778888888887555566777888888888888775
No 165
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=94.93 E-value=0.0028 Score=58.58 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=29.5
Q ss_pred cccHHHHHHHHhccccCCccccCCCcceEEEEcCCC
Q 011653 445 RFSYLELLQATDNFAENNIIGRGGFGPFMEQDLKMG 480 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~~G 480 (480)
++++.++..++++|....+||+|+||+||+|...+|
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~ 63 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG 63 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCC
Confidence 455566778899999999999999999999997654
No 166
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=93.55 E-value=0.022 Score=51.91 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.4
Q ss_pred CCccccCCCcceEEEEcCC
Q 011653 461 NNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~~ 479 (480)
.+.||+|+||+||||++.+
T Consensus 41 ~~~iG~G~fG~Vy~~~~~~ 59 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWHG 59 (307)
T ss_dssp EEECCCCSSSEEEEEESSS
T ss_pred eeEEeeCCCcEEEEEEECC
Confidence 3679999999999999754
No 167
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=93.36 E-value=0.011 Score=56.99 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=29.1
Q ss_pred ccHHHHHHHHhccccCCccccCCCcceEEEEcCC
Q 011653 446 FSYLELLQATDNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 446 ~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
+.+.++..++++|...++||+|+||+||+|...+
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~ 97 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKN 97 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETT
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcC
Confidence 4566777788999999999999999999998754
No 168
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=92.96 E-value=0.025 Score=52.26 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.2
Q ss_pred cccCCccccCCCcceEEEEcC
Q 011653 458 FAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~ 478 (480)
|.-.++||+|+||+||||++.
T Consensus 43 ~~l~~~LG~G~fG~Vy~a~~~ 63 (329)
T 4aoj_A 43 IVLKWELGEGAFGKVFLAECH 63 (329)
T ss_dssp EEEEEEEEECSSEEEEEEEES
T ss_pred eEEEEEEccCCCcEEEEEEEC
Confidence 444567999999999999864
No 169
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=91.98 E-value=0.0094 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.4
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|...++||+|+||+||+|...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~ 79 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSK 79 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEET
T ss_pred hheeeeheeccCCCeEEEEEEEC
Confidence 56888889999999999999875
No 170
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=89.89 E-value=0.11 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=16.9
Q ss_pred cccHHHHHHHHhcccc---------CCccccCCCcceEEEEcC
Q 011653 445 RFSYLELLQATDNFAE---------NNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~---------~~~iG~GgfG~VYkg~L~ 478 (480)
..++++...++..|.. .++||+|+||+||+|...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~ 71 (325)
T 3kul_A 29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLR 71 (325)
T ss_dssp --------------CCBCCGGGEEEEEEEEETTTEEEEEEEEC
T ss_pred cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEe
Confidence 3466676777766654 378999999999999873
No 171
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=89.71 E-value=0.076 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=17.0
Q ss_pred ccccCCccccCCCcceEEEEc
Q 011653 457 NFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L 477 (480)
+|.-.+.||+|+||+||||..
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~ 85 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADA 85 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEE
T ss_pred HeEEeeEEecCCCeEEEEEEE
Confidence 344456799999999999975
No 172
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=87.95 E-value=0.099 Score=49.95 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=28.7
Q ss_pred cccHHHHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 445 RFSYLELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 445 ~~~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.+.++++...+++|...++||+|+||+||+|...
T Consensus 50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~ 83 (412)
T 2vd5_A 50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMK 83 (412)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEET
T ss_pred hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEEC
Confidence 3566677777889999999999999999999864
No 173
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=87.85 E-value=0.1 Score=49.90 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHhccccCCccccCCCcceEEEEc
Q 011653 453 QATDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 453 ~aT~~F~~~~~iG~GgfG~VYkg~L 477 (480)
..+.+|...++||+|+||+||+|.-
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~ 99 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATD 99 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCceeEEEecccccCCCEEEEEEEe
Confidence 3455677778999999999999983
No 174
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=87.85 E-value=0.11 Score=47.98 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.5
Q ss_pred HhccccCCccccCCCcceEEEEc
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L 477 (480)
.+.|....+||+|+||+||+|.-
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~ 79 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKD 79 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEE
Confidence 34566667899999999999974
No 175
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=87.18 E-value=0.13 Score=49.16 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.4
Q ss_pred cHHHHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 447 SYLELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 447 ~~~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.+.++..++++|.-.++||+|+||+||+|...
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~ 91 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK 91 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEET
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEEC
Confidence 34556667788988899999999999999864
No 176
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=86.67 E-value=0.18 Score=46.72 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.0
Q ss_pred cccCCccccCCCcceEEEEcC
Q 011653 458 FAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~ 478 (480)
|..-..||+|+||+||+|.-.
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~ 96 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVR 96 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEET
T ss_pred cEEeEEeecCcCeEEEEEEEC
Confidence 444567999999999999853
No 177
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=84.82 E-value=0.23 Score=47.08 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=16.6
Q ss_pred cccCCccccCCCcceEEEEc
Q 011653 458 FAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L 477 (480)
|.-...||+|+||+||+|.-
T Consensus 56 Y~~~~~lG~G~fG~V~~a~~ 75 (398)
T 4b99_A 56 YEIIETIGNGAYGVVSSARR 75 (398)
T ss_dssp EEEEEEEEECSSCEEEEEEE
T ss_pred eEEEEEEecccCeEEEEEEE
Confidence 44457899999999999974
No 178
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=84.32 E-value=0.27 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=17.8
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.|..-..||+|+||+||+|.-.
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~ 173 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVR 173 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEET
T ss_pred hcEeeeEeccCcCcEEEEEEEC
Confidence 3555578999999999999753
No 179
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=84.05 E-value=0.29 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=18.9
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|...++||+|+||+||+|...
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~ 67 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLK 67 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CB
T ss_pred hhceeeeEEeeCCCeEEEEEEEe
Confidence 46777889999999999999864
No 180
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=82.66 E-value=0.39 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=18.5
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.-...||+|+||+||+|...
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~ 93 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVS 93 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEEC
T ss_pred hHeEEeeEeeeCCCEEEEEEEEc
Confidence 34555678999999999999853
No 181
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=82.53 E-value=0.32 Score=49.22 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=19.7
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.-.++||+|+||+||+|.-.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~ 211 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKA 211 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred HHeEEEEEEecccCeEEEEEEEC
Confidence 56777789999999999999753
No 182
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=82.46 E-value=0.42 Score=43.41 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.1
Q ss_pred cccCCccccCCCcceEEEEcC
Q 011653 458 FAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~ 478 (480)
|.-...||+|+||+||+|...
T Consensus 38 ~~~~~~lG~G~~g~Vy~~~~~ 58 (307)
T 3lb7_A 38 VMLSTRIGSGSFGTVYKGKWH 58 (307)
T ss_dssp CCEEEEEEECSSCEEEEEESS
T ss_pred eEEEeEecCCCCeEEEEEEEC
Confidence 444578999999999999864
No 183
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=81.54 E-value=0.42 Score=46.20 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=20.4
Q ss_pred HhccccCCccccCCCcceEEEEcCC
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
.+.|.-.+.||+|+||+||+|...+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~ 211 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNK 211 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETT
T ss_pred hHHeEEEEEcccCCceEEEEEEECC
Confidence 3456666889999999999998764
No 184
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=81.03 E-value=0.45 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.6
Q ss_pred HHhccccCCccccCCCcceEEEEcC
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.++.|.-...||+|+||+||+|...
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~ 75 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQK 75 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEET
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEEC
Confidence 3456777789999999999999865
No 185
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=80.94 E-value=0.36 Score=45.09 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.0
Q ss_pred HHhccccCCccccCCCcceEEEE
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQD 476 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~ 476 (480)
..+.|...++||+|+||+||+|+
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~ 85 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEAT 85 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEE
T ss_pred CCEEEEEEEEeeccCCEEEEEEE
Confidence 34556677889999999999995
No 186
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=80.78 E-value=0.44 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=18.5
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.-...||+|+||+||+|...
T Consensus 37 ~~y~i~~~lG~G~~g~V~~~~~~ 59 (309)
T 3p86_A 37 CDLNIKEKIGAGSFGTVHRAEWH 59 (309)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred hHceeeeEeecCCCeEEEEEEEC
Confidence 34555678999999999999753
No 187
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=80.24 E-value=0.68 Score=43.21 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHhccccCCccccCCCcceEEEEcC
Q 011653 449 LELLQATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 449 ~~l~~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.......+.|...+.||+|+||.||+|...
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~ 116 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHR 116 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEET
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEEC
Confidence 334455667888899999999999999875
No 188
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=79.93 E-value=0.46 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.6
Q ss_pred cccCCccccCCCcceEEEEcCC
Q 011653 458 FAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
|.-.+.||+|+||+||+|...+
T Consensus 58 y~~~~~LG~G~fg~Vy~~~~~~ 79 (390)
T 2zmd_A 58 YSILKQIGSGGSSKVFQVLNEK 79 (390)
T ss_dssp EEEEEEEECCSSEEEEEEECTT
T ss_pred eEEEEEEccCCCeEEEEEEcCC
Confidence 6666889999999999998654
No 189
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=79.79 E-value=0.52 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.7
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.-.++||+|+||+||+|...
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~ 74 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLK 74 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred hHcEEEEEEeeCCCeEEEEEEEC
Confidence 45777789999999999999865
No 190
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=79.68 E-value=0.47 Score=43.63 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.0
Q ss_pred cccCCccccCCCcceEEEEcC
Q 011653 458 FAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~ 478 (480)
|...++||+|+||+||+|...
T Consensus 46 ~~~~~~lG~G~~g~Vy~~~~~ 66 (333)
T 1mqb_A 46 VTRQKVIGAGEFGEVYKGMLK 66 (333)
T ss_dssp EEEEEEEEECSSSEEEEEEEE
T ss_pred hhcccEEecCCCeEEEEEEEe
Confidence 334578999999999999764
No 191
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=79.06 E-value=0.55 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=17.8
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
++|.-.+.||+|+||+||+|..
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~ 102 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEA 102 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEE
T ss_pred HHCEeeeEEeeCCCeeEEEEEE
Confidence 3455567899999999999974
No 192
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=79.06 E-value=0.44 Score=44.72 Aligned_cols=17 Identities=47% Similarity=0.825 Sum_probs=15.2
Q ss_pred CCccccCCCcceEEEEc
Q 011653 461 NNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L 477 (480)
.++||+|+||+||+|..
T Consensus 94 ~~~LG~G~fg~Vy~~~~ 110 (373)
T 3c1x_A 94 NEVIGRGHFGCVYHGTL 110 (373)
T ss_dssp EEEEECCSSSEEEEEEE
T ss_pred CcEeeeCCCeEEEEEEE
Confidence 46799999999999986
No 193
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=78.39 E-value=0.53 Score=43.02 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=17.5
Q ss_pred cccCCccccCCCcceEEEEcC
Q 011653 458 FAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~ 478 (480)
|.....||+|+||.||+|...
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~ 67 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREK 67 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEET
T ss_pred hhccEEeccCCCeEEEEEEEC
Confidence 444568999999999999875
No 194
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=78.36 E-value=0.65 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.4
Q ss_pred hccccCCccccCCCcceEEEEcCC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
+.|.-...||+|+||+||+|...+
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~ 207 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNG 207 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETT
T ss_pred hHceeeeeecCCCCeEEEEEEECC
Confidence 345556789999999999998764
No 195
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=78.35 E-value=0.61 Score=41.11 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=22.7
Q ss_pred cccHHHHHHHHhc---cccCCccccCCCcceEEEEc-CCC
Q 011653 445 RFSYLELLQATDN---FAENNIIGRGGFGPFMEQDL-KMG 480 (480)
Q Consensus 445 ~~~~~~l~~aT~~---F~~~~~iG~GgfG~VYkg~L-~~G 480 (480)
.+++..+.+..+. +.-...||+|+||.||+|.. ++|
T Consensus 33 ~~~~~~l~~~~~~~~~~~i~~~ig~G~~g~Vy~a~~~~~g 72 (258)
T 1zth_A 33 GRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDG 72 (258)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEEEECSSEEEEEEEEEETT
T ss_pred HHHHHHHHHHHhCCCchhhCCEEeecceEEEEEEEEcCCC
Confidence 3444444444432 22346799999999999987 443
No 196
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=77.79 E-value=0.77 Score=41.10 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=18.1
Q ss_pred cccCCccccCCCcceEEEEcCCC
Q 011653 458 FAENNIIGRGGFGPFMEQDLKMG 480 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~~G 480 (480)
+.-.+.||+|+||.||+|..++|
T Consensus 92 ~~~~~~iG~G~~g~Vy~~~~~~g 114 (282)
T 1zar_A 92 DAIGKLMGEGKESAVFNCYSEKF 114 (282)
T ss_dssp SEEEEEEEECSSEEEEEEEETTT
T ss_pred EEecCEeccCCCceEEEEEeCCC
Confidence 33447899999999999987443
No 197
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=77.75 E-value=0.52 Score=44.59 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=18.0
Q ss_pred cccCCccccCCCcceEEEEcCC
Q 011653 458 FAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
|...++||+|+||+||+|...+
T Consensus 42 Y~~~~~lG~G~~g~V~~a~~~~ 63 (394)
T 4e7w_A 42 YTNCKVIGNGSFGVVFQAKLVE 63 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEETT
T ss_pred EEEeEEEeeCCCeEEEEEEECC
Confidence 4445789999999999998743
No 198
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=77.73 E-value=0.58 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.1
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
++|...++||+|+||+||+|..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~ 75 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRK 75 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEEEE
Confidence 5677778999999999999976
No 199
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=77.71 E-value=0.56 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.1
Q ss_pred HhccccCCccccCCCcceEEEEc
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L 477 (480)
++.|...+.||+|+||+||+|.-
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~ 75 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARD 75 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEE
Confidence 34477778899999999999984
No 200
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=77.27 E-value=0.88 Score=43.39 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.7
Q ss_pred HHhccccCCccccCCCcceEEEEcC
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
..+.|.-.+.||+|+||+||+|.-.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~ 157 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFER 157 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEET
T ss_pred hhccEEEEeEEeeCCCeEEEEEEEC
Confidence 4567777788999999999999753
No 201
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=77.08 E-value=0.6 Score=44.57 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=17.7
Q ss_pred cccCCccccCCCcceEEEEcC
Q 011653 458 FAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L~ 478 (480)
|...++||+|+||+||+|...
T Consensus 56 y~~~~~lG~G~fg~Vy~~~~~ 76 (420)
T 1j1b_A 56 YTDTKVIGNGSFGVVYQAKLC 76 (420)
T ss_dssp EEEEEEEEECSSEEEEEEEET
T ss_pred EEeeeEEeeCCCEEEEEEEEC
Confidence 455678999999999999874
No 202
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=77.04 E-value=0.6 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=19.4
Q ss_pred HhccccCCccccCCCcceEEEEc
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L 477 (480)
.++|.-.+.||+|+||+||+|..
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~ 67 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATA 67 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE
T ss_pred HHHceeeeEeccCCCcceEEEEe
Confidence 45666678999999999999975
No 203
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=76.97 E-value=0.7 Score=42.49 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=20.9
Q ss_pred HHhccccCCccccCCCcceEEEEcC
Q 011653 454 ATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 454 aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
..++|.-.+.||+|+||+||+|...
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~ 69 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAP 69 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred cHHHCeeeeeeeecCCeeEEEEEec
Confidence 4566777789999999999999864
No 204
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=76.91 E-value=0.8 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=19.2
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.-.++||+|+||+||+|.-.
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~ 60 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHK 60 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEET
T ss_pred hheEEEEEEeeCCCeEEEEEEEc
Confidence 45666789999999999999864
No 205
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=76.54 E-value=0.63 Score=43.75 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=21.3
Q ss_pred HHHhccccCCccccCCCcceEEEEcC
Q 011653 453 QATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 453 ~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
..++.|.-..+||+|+||+||+|.-.
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~ 76 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDR 76 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEET
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEc
Confidence 34567777789999999999999753
No 206
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=75.84 E-value=0.86 Score=41.70 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.6
Q ss_pred HHHhccccCCccccCCCcceEEEEcC
Q 011653 453 QATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 453 ~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
...+.|.-...||+|+||+||+|...
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~ 59 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR 59 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC
Confidence 34567888899999999999999864
No 207
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=75.58 E-value=0.75 Score=43.15 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=18.3
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+|.-...||+|+||+||+|...
T Consensus 115 ~~~~~~~lG~G~~g~V~~~~~~ 136 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSGRLR 136 (377)
T ss_dssp GEEEEEEEEEETTEEEEEEEET
T ss_pred HeEEeeEeccCCCCeEEEEEEe
Confidence 4555678999999999999875
No 208
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=75.56 E-value=0.79 Score=41.78 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=18.0
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.-...||+|+||+||+|.-
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~ 64 (320)
T 3a99_A 43 SQYQVGPLLGSGGFGSVYSGIR 64 (320)
T ss_dssp TTEEEEEECSSSSSCEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEE
Confidence 3455567899999999999974
No 209
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=75.43 E-value=0.68 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.2
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
++|.....||+|+||+||+|.-
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~~~ 72 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKMRH 72 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEEEE
T ss_pred hheeEeeEecccCCEEEEEEEE
Confidence 4565667899999999999985
No 210
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=74.79 E-value=0.76 Score=43.16 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.6
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.-.+.||+|+||+||+|..
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~ 90 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEA 90 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred hheEeeeEEecCCCeEEEEEEE
Confidence 3455557899999999999974
No 211
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=74.64 E-value=0.78 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=19.6
Q ss_pred HhccccCCccccCCCcceEEEEc
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L 477 (480)
.++|.-...||+|+||+||+|..
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~ 66 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATA 66 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE
T ss_pred HHHceeeeeecCCCCceeEEeee
Confidence 45677778999999999999985
No 212
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=74.61 E-value=0.78 Score=41.91 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.8
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
++|.-.+.||+|+||+||+|.-
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~ 57 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAIN 57 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEE
Confidence 3455567899999999999974
No 213
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=74.46 E-value=0.88 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.2
Q ss_pred hccccCCccccCCCcceEEEEcCC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLKM 479 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~~ 479 (480)
+.|.-...||+|+||+||+|...+
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~ 290 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNG 290 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETT
T ss_pred hhhhhheecccCCCeEEEEEEECC
Confidence 345556789999999999998764
No 214
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=73.69 E-value=0.78 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=12.1
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+|.-...||+|+||+||+|...
T Consensus 38 ~y~~~~~lg~G~~g~Vy~~~~~ 59 (345)
T 2v62_A 38 QWVLGKKIGSGGFGLIYLAFPT 59 (345)
T ss_dssp EEEEEEEC------CEEEEEES
T ss_pred eEEEEeeEeecCCeEEEEEEec
Confidence 4555678999999999999864
No 215
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=73.63 E-value=1 Score=43.41 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=11.8
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.-..+||+|+||+||+|.-
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~ 74 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYD 74 (458)
T ss_dssp TTEEECCC-------CEEEEEE
T ss_pred CCeEEeeEeeecCCeEEEEEEE
Confidence 4567778999999999999974
No 216
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=73.59 E-value=0.89 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.9
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.+|.-...||+|+||.||+|...
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~ 242 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWK 242 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEG
T ss_pred HHceeeeEecCCCCeEEEEEEEc
Confidence 34555678999999999999865
No 217
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=73.43 E-value=0.9 Score=42.56 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=11.5
Q ss_pred ccCCccccCCCcceEEEEcC
Q 011653 459 AENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 459 ~~~~~iG~GgfG~VYkg~L~ 478 (480)
...++||+|+||.||+|...
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~ 111 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEET 111 (373)
T ss_dssp EEEEECC-----CEEEEEET
T ss_pred ecceEEecCcCEEEEEEEEc
Confidence 44567999999999999853
No 218
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=73.24 E-value=0.95 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.9
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.-.+.||+|+||+||+|...
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~ 215 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR 215 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred HHeEEEeeecCcCCeeEEEEEec
Confidence 44555678999999999999864
No 219
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=72.95 E-value=0.98 Score=41.88 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=18.8
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|.....||+|+||+||+|.-.
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~ 63 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHK 63 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET
T ss_pred HHCEEEEEeecCcCcEEEEEEEC
Confidence 34666688999999999999864
No 220
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=72.93 E-value=0.89 Score=43.54 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.0
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.|.-.++||+|+||+||+|.-.
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~ 119 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDH 119 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEET
T ss_pred cEEEEEEcccCccEEEEEEEEC
Confidence 4555688999999999999753
No 221
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=72.87 E-value=1.1 Score=44.45 Aligned_cols=23 Identities=39% Similarity=0.819 Sum_probs=19.4
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
++|...++||+|+||+||+|...
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~ 207 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMK 207 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET
T ss_pred hheEEEEEEeeCCCeEEEEEEEC
Confidence 45666788999999999999864
No 222
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=72.50 E-value=0.87 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.5
Q ss_pred HhccccCCccccCCCcceEEEEc
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L 477 (480)
.++|...++||+|+||+||+|.-
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~ 169 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKE 169 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEE
Confidence 35677778999999999999874
No 223
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=72.05 E-value=0.89 Score=42.47 Aligned_cols=22 Identities=5% Similarity=-0.163 Sum_probs=18.2
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+|...+.||+|+||+||+|.-.
T Consensus 63 ~y~~~~~lG~G~~g~V~~~~~~ 84 (371)
T 3q60_A 63 KLKLVEPLRVGDRSVVFLVRDV 84 (371)
T ss_dssp EEEEEEEEEECSSEEEEEEEET
T ss_pred eeeeeeeccCCCCEEEEEEEEC
Confidence 4556688999999999999853
No 224
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=71.87 E-value=0.97 Score=42.24 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=17.8
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.....||+|+||+||+|.-
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~ 63 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAID 63 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEE
T ss_pred ccEEEEeEEecCCCeEEEEEEE
Confidence 3455567899999999999974
No 225
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=71.68 E-value=0.81 Score=42.89 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=18.3
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+.|.-.+.||+|+||+||+|...
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~ 95 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQ 95 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-
T ss_pred ceEEEcceeecCCCEEEEEEEEC
Confidence 44555688999999999999863
No 226
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=71.68 E-value=0.98 Score=45.76 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.3
Q ss_pred CccccCCCcceEEEEc
Q 011653 462 NIIGRGGFGPFMEQDL 477 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L 477 (480)
+.||+|+||+||+|..
T Consensus 375 ~~LG~G~fG~Vy~~~~ 390 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYY 390 (635)
T ss_dssp EEEEECSSEEEEEEEE
T ss_pred CEeccCCCEEEEEEEE
Confidence 5799999999999965
No 227
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=71.66 E-value=0.92 Score=41.66 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=18.4
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+.|...+.||+|+||.||++.-.
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~ 63 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDA 63 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEET
T ss_pred CceEEEEEEeeCCCeEEEEEEEC
Confidence 34555678999999999999864
No 228
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=71.63 E-value=0.94 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.0
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.-.+.||+|+||+||+|.-
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~ 178 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTE 178 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEE
Confidence 4455567899999999999975
No 229
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=71.10 E-value=1.9 Score=39.43 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.7
Q ss_pred HHHhccccCCccccCCCcceEEEEcC
Q 011653 453 QATDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 453 ~aT~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
...+.|.-...||+|+||+||+|...
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~~ 64 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKWR 64 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEET
T ss_pred cccccEEEEeeecCCCCcEEEEEEEc
Confidence 44567888889999999999999863
No 230
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=70.69 E-value=1.1 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.743 Sum_probs=20.1
Q ss_pred HhccccCCccccCCCcceEEEEcC
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.++|...++||+|+||.||+|...
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~ 206 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVR 206 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET
T ss_pred ccceEEEEEEeeCCCEEEEEEEEC
Confidence 355777789999999999999864
No 231
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=70.57 E-value=1.3 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.1
Q ss_pred HhccccCCccccCCCcceEEEEcC
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.++|.-..+||+|+||+||+|...
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~ 363 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERK 363 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEES
T ss_pred ccceEEEEEEccCCCEEEEEEEEC
Confidence 356777789999999999999864
No 232
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=70.49 E-value=1.2 Score=41.99 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.1
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+.|.-.+.||+|+||+||+|.-.
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~ 73 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEK 73 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEET
T ss_pred cceEEEEEEecCCCEEEEEEEEC
Confidence 45666788999999999999764
No 233
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=70.22 E-value=1.5 Score=41.19 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.2
Q ss_pred CCccccCCCcceEEEEcCCC
Q 011653 461 NNIIGRGGFGPFMEQDLKMG 480 (480)
Q Consensus 461 ~~~iG~GgfG~VYkg~L~~G 480 (480)
...||+|+||.||+|.-++|
T Consensus 100 ~~~IG~Gk~a~VY~a~d~~G 119 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADEKG 119 (397)
T ss_dssp EEEEEECSSEEEEEEECTTC
T ss_pred cCEeeeCCceEEEEEECCCC
Confidence 46799999999999987665
No 234
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=70.03 E-value=1 Score=41.63 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=18.3
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+|.-.+.||+|+||+||+|...
T Consensus 43 ~y~~~~~lg~G~~g~Vy~~~~~ 64 (352)
T 2jii_A 43 QWKLKSFQTRDNQGILYEAAPT 64 (352)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEEEecCCCCeEEEEEeec
Confidence 4555678999999999999864
No 235
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=69.92 E-value=3.1 Score=41.09 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=9.5
Q ss_pred cCCccccCCCcceEEEEcC
Q 011653 460 ENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 460 ~~~~iG~GgfG~VYkg~L~ 478 (480)
..++||+|+||+||||...
T Consensus 340 ~~~~LG~G~fg~Vy~~~~~ 358 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSYL 358 (540)
T ss_dssp --------CCEEEEEEECS
T ss_pred CCCEEeeCCCEEEEEEEEC
Confidence 4578999999999999654
No 236
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=68.64 E-value=1.3 Score=42.79 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.1
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|...+.||+|+||+||+|.-
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~ 83 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYD 83 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEE
T ss_pred CCeEEEEEeecCCCeEEEEEEE
Confidence 4566668899999999999963
No 237
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=68.56 E-value=1.4 Score=41.28 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=17.9
Q ss_pred hccccCCccccCCCcceEEEEc
Q 011653 456 DNFAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L 477 (480)
+.|.-..+||+|+||+||+|.-
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~ 58 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWD 58 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEe
Confidence 3455567899999999999974
No 238
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=68.10 E-value=1.6 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.7
Q ss_pred ccccCCccccCCCcceEEEEcC
Q 011653 457 NFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 457 ~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.|.-.+.||+|+||+||+|...
T Consensus 391 ~y~i~~~LG~G~fG~Vy~a~~~ 412 (656)
T 2j0j_A 391 RIELGRCIGEGQFGDVHQGIYM 412 (656)
T ss_dssp GEEEEEEEECCSSCCEEEEEEC
T ss_pred cEEEeeEEeeCCCEEEEEEEEe
Confidence 3444577999999999999863
No 239
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=67.56 E-value=1.5 Score=42.84 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=17.4
Q ss_pred HhccccCCccccCCCcceEEEEcC
Q 011653 455 TDNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 455 T~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
.+.|.....||+|+||+||+|.-.
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~ 58 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEK 58 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEET
T ss_pred ccceEEEeEecccCCeEEEEEEEC
Confidence 445666688999999999999854
No 240
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=64.75 E-value=1.8 Score=40.99 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CccccCCCcceEEEEcC
Q 011653 462 NIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 462 ~~iG~GgfG~VYkg~L~ 478 (480)
.+||+|+||+||+|.-.
T Consensus 68 ~~LG~G~~g~V~~~~~~ 84 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNK 84 (400)
T ss_dssp EEEEEETTEEEEEEEET
T ss_pred ceeeeccCeEEEEEEEC
Confidence 57999999999999754
No 241
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=64.38 E-value=1.6 Score=42.54 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=15.4
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+.|.-...||+|+||+||+|.-.
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~ 59 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDK 59 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEET
T ss_pred cCeEEeeEEecCCCEEEEEEEEC
Confidence 34555678999999999999753
No 242
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=64.06 E-value=2.4 Score=42.73 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.3
Q ss_pred ccccCCCcceEEEEcC
Q 011653 463 IIGRGGFGPFMEQDLK 478 (480)
Q Consensus 463 ~iG~GgfG~VYkg~L~ 478 (480)
.||+|+||+||+|+..
T Consensus 343 ~LG~G~fG~Vy~~~~~ 358 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYR 358 (613)
T ss_dssp EEEECSSSEEEEEEEE
T ss_pred EEecCCCcEEEEEEEe
Confidence 6999999999999763
No 243
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=62.45 E-value=2.1 Score=39.02 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.5
Q ss_pred cccCCccccCCCcceEEEEc
Q 011653 458 FAENNIIGRGGFGPFMEQDL 477 (480)
Q Consensus 458 F~~~~~iG~GgfG~VYkg~L 477 (480)
|.-...||+|+||+||+|..
T Consensus 43 y~~~~~lg~G~~g~V~~~~~ 62 (326)
T 2w1i_A 43 LKFLQQLGKGNFGSVEMCRY 62 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEE
T ss_pred ceeeeeeccCCCeEEEEEEe
Confidence 44457899999999999984
No 244
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.32 E-value=29 Score=25.01 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=17.0
Q ss_pred ccccCCCCCCEEEcccccccccCCcCcCCCCCCCceecc
Q 011653 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199 (480)
Q Consensus 161 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 199 (480)
..|.+|.+|+.+.|..+ ++..-..+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34445555555555432 222223344455555554444
No 245
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.09 E-value=39 Score=24.33 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=26.7
Q ss_pred cccccCCcCcCCCCCCCceecccccccccCCccCCCCCCCCEEEccC
Q 011653 178 KLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLG 224 (480)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 224 (480)
.++..-..+|.+|.+|+.+.+..+ ++..-...|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344344456777777777777653 2223334566666676666654
No 246
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=56.11 E-value=2.7 Score=42.97 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.8
Q ss_pred hccccCCccccCCCcceEEEEcC
Q 011653 456 DNFAENNIIGRGGFGPFMEQDLK 478 (480)
Q Consensus 456 ~~F~~~~~iG~GgfG~VYkg~L~ 478 (480)
+.|.-..+||+||||+||+|...
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~ 102 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDR 102 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEG
T ss_pred CceEEEEEEeeCCCeEEEEEEEc
Confidence 45666678999999999999753
Done!