BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011654
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 589 bits (1518), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I SN KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 588 bits (1517), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I SN KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I SN KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 587 bits (1513), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/468 (61%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPT+T G+G G+AADL Y E+ AR I SN KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTETYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 587 bits (1513), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/468 (61%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I SN KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ + Q+LSNP+FLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPQFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 587 bits (1512), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/468 (61%), Positives = 354/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I SN KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKS VPV+ AE+I +I N++ + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/468 (61%), Positives = 354/468 (75%), Gaps = 13/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
KICCIGAGYVGGPT +VIA CP+I V VVD++ SRI AWN LPIYEPGL++VV CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
G+NLFFST+I+ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I SN KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKST PV+ AE+I +I N++ + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKST-PVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 184
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+A+QAL VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 185 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 244
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE L EVA YW+QVI
Sbjct: 245 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 304
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
+NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 305 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 364
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
IYDP+V +QI DLS D + S+ V + D Y+A AH V I TE
Sbjct: 365 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 415
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
WD FK LDY++I M KPA+IFDGR +LD +L+ IGF + +IGK
Sbjct: 416 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 463
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 272/471 (57%), Positives = 354/471 (75%), Gaps = 14/471 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++IA WN D+LPIYEPGL+++V R
Sbjct: 11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
GRNLFFS+DI K +AEAD++F+SVNTPTK G G G A DL Y ES +R IA + KI
Sbjct: 71 GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 123 VVEKSTVPVKTAEAIEKILTH---NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
VVEKSTVPVK AE+I IL N+ +K+Q+LSNPEFLAEGTA++DL NPDRVLIGG
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGE 190
Query: 180 ETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
+PEG +A+ L +Y +WVP +RIITTN WS+ELSKL ANAFLAQRISS+N++SA+CEA
Sbjct: 191 SSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250
Query: 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQV 299
TGA++++V+HA+G DTRIG +FL +SVGFGGSCFQKD+L+LVY+CE L +VA+YW+ V
Sbjct: 251 TGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGV 310
Query: 300 IKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAK 359
I +N++Q+ RF ++I++ +FNTV+ KKIAI GFAFKK+TGDTRE+ AI V K L+ + AK
Sbjct: 311 ININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAK 370
Query: 360 LSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCIL 419
LS+YDP+V + Q+ DL+ D + + V D Y AA+ AH + +L
Sbjct: 371 LSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHAIVVL 419
Query: 420 TEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLD 470
TEWDEF L+Y +I ++M+ PA IFDGR ILD + LREIGF ++IG D
Sbjct: 420 TEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 279 bits (713), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 267/474 (56%), Gaps = 29/474 (6%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
+ + IG+GYVG T A +A +V +D+ ++I N +PI+EPGL++V+ +
Sbjct: 9 MNLTIIGSGYVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
R GR L FSTDIE VA D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGR-LRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 NKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
K++V+KSTVPV TAE A+ + L + + ++SNPEFL EG A+ D PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + G++A + +K +YA + +R + ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
L + GAD+ V IG D RIG FL + G+GGSCF KD+ L+ + +G +
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQ 298
Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
K V VN QK ++IV+ ++G+ AI G AFK +T D RE P+ ++ LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
A+++ YDP V +++ +R +++ DHP L+ +S V D QAA+DA
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIALDL--ADHPSWLERLS--------FVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + P IFDGRN+ + E + E G + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
+ + IG+G VG T A +A +V +D+ ++I N +PI+EPGL++V+ +
Sbjct: 9 MNLTIIGSGSVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
R GR L FSTDIE VA D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGR-LRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 NKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
K++V+KSTVPV TAE A+ + L + + ++SNPEFL EG A+ D PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + G++A + +K +YA + +R + ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
L + GAD+ V IG D RIG FL + G+GGSCF KD+ L+ + +G +
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQ 298
Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
K V VN QK ++IV+ ++G+ AI G AFK +T D RE P+ ++ LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
A+++ YDP V +++ +R +++ DHP L+ +S V D QAA+DA
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIALDL--ADHPSWLERLS--------FVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + P IFDGRN+ + E + E G + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 176/474 (37%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
+ + IG+G VG T A +A +V +D+ ++I N +PI+EPGL++V+ +
Sbjct: 9 MNLTIIGSGKVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
R GR L FSTDIE VA D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGR-LRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 NKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
K++V+KSTVPV TAE A+ + L + + ++SNPEFL EG A+ D PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + G++A + +K +YA + +R + ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
L + GAD+ V IG D RIG FL + G+GGSCF KD+ L+ + +G +
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQ 298
Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
K V VN QK ++IV+ ++G+ AI G AFK +T D RE P+ ++ LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
A+++ YDP V +++ +R +++ DHP L+ +S V D QAA+DA
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIALDL--ADHPSWLERLS--------FVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + P IFDGRN+ + E + E G + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 165/473 (34%), Positives = 247/473 (52%), Gaps = 44/473 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPK---IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVV 58
V+I IG GYVG +++ C EV VD +I + + PIYEPGL+ +V
Sbjct: 9 VRIAXIGTGYVG-----LVSGACFSDFGHEVVCVDKDARKIELLHQNVXPIYEPGLDALV 63
Query: 59 -TQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVS 117
+ + L F+TD+ + V +AD VF++V TP++ G G A DL+Y +AAR IA
Sbjct: 64 ASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR---GDGHA-DLSYVFAAAREIAENL 119
Query: 118 NSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIG 177
++V KSTVPV T + +E+I+ + +++SNPEFL EG AI+D PDRV++G
Sbjct: 120 TKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPDRVVVG 179
Query: 178 GRETPEGQKAIQALKDVYAHWVPEDR--IITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
E + A Q +++Y ++ T ++EL K AANAFLA +I+ +N ++
Sbjct: 180 ----TEDEFARQVXREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
LCE GADV +VS IG D RIG +FL++ G+GGSCF KD L L N
Sbjct: 236 LCEQVGADVQEVSRGIGXDNRIGGKFLHAGPGYGGSCFPKDTLALXKTAADN--ETPLRI 293
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
+ ++VND +K +++ + V GK + ILG FK +T D R+ P++ + L
Sbjct: 294 VEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILGLTFKPNTDDXRDAPSLSIIAALQD 353
Query: 356 DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHG 415
A + YDP+ E Q + L+ V V + Y AA A
Sbjct: 354 AGATVKAYDPEGVE-QASKXLT---------------------DVEFVENPYAAADGADA 391
Query: 416 VCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
+ I+TEWD F+ LD +I ++++ P + D RNI +L G +GKP
Sbjct: 392 LVIVTEWDAFRALDLTRIKNSLKSPVLV-DLRNIYPPAELERAGLQYTGVGKP 443
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 237/457 (51%), Gaps = 41/457 (8%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ- 60
+ I +G GYVG ++ V +D ++I N +PIYEPGLE ++ +
Sbjct: 3 LDIAVVGIGYVG--LVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARN 60
Query: 61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
+ L F T+IE+ V EADI+F++V TP G +AD++Y AAR I +
Sbjct: 61 VKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSRY 115
Query: 121 KIVVEKSTVPVKTAEAIEKILTH--NSRE--IKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
++V KSTVPV + I K + + RE I + I SNPEFL EG AI D PDRV++
Sbjct: 116 ILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVV 175
Query: 177 GGRETPEGQKAIQALKDVYAHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + +A + + +Y + + R++ ++ SAE++K AANA LA RIS +N ++
Sbjct: 176 G----VDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
LCE GADV+ V IG D+RIG +FL G+GGSCF KD+ L+ E NG
Sbjct: 232 LCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--MEV 289
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
+ V +VN+ QK+ ++ + V G+ +AI G +FK T D RE P++ + + LL
Sbjct: 290 LEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLE 349
Query: 356 DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHG 415
++ +YDP V + Q+ L K V D Y A + A
Sbjct: 350 VGCRVRVYDP-VAMKEAQKRLGDK--------------------VEYTTDMYDAVRGAEA 388
Query: 416 VCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV 452
+ +TEW EF+ D+ + M + + DGRN+ ++
Sbjct: 389 LFHVTEWKEFRMPDWSALSQAM-AASLVIDGRNVYEL 424
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 211/438 (48%), Gaps = 46/438 (10%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
M + +G GYVG + + V D++ S + + IYEPGLE+ + +
Sbjct: 21 MASLSVLGLGYVG--VVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGR 78
Query: 61 C--RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSN 118
GR L F+ E+ VA D F++V TP G +ADL Y E+AAR +
Sbjct: 79 ALSSGR-LSFAESAEEAVAATDATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIR 132
Query: 119 SN---KIVVEKSTVPVKTAEA-IEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRV 174
+ +VV KSTVP T E + + + + +K+ + SNPEFL EG+A++D F PDR+
Sbjct: 133 AKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRI 192
Query: 175 LIGGRETPEGQKAIQALKDVY-AHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
+IG + ++A L DVY A P+ + AEL K A+N FLA +IS N +
Sbjct: 193 VIGAGD----ERAASFLLDVYKAVDAPK---LVMKPREAELVKYASNVFLALKISFANEV 245
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
L + G D +V A+G D RIG + + +GFGGSCF KD L + E GL
Sbjct: 246 GLLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAI 305
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL 353
+ K V++VN+Y R+ +++ + G+ + +LG AFK +T D RE+ ++V + L
Sbjct: 306 S--KAVLRVNEYMP-RYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL 362
Query: 354 LGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDA 413
L A++ ++DP E V V D
Sbjct: 363 LERGARVYVHDPMAMEKA---------------------RAVLGDSVTYVEDPQALLDQV 401
Query: 414 HGVCILTEWDEFKTLDYQ 431
GV I T W +++ LDY+
Sbjct: 402 EGVIIATAWPQYEGLDYR 419
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 179/377 (47%), Gaps = 32/377 (8%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
++I G GYVG ++ + EV VD+S ++I N + PI EPGLE ++ Q
Sbjct: 1 MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG 58
Query: 62 R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA----N 115
R GR L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I
Sbjct: 59 RQTGR-LSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIRE 112
Query: 116 VSNSNKIVVEKSTVPVKTAEAIEKILTHNSRE---IKYQILSNPEFLAEGTAIQDLFNPD 172
S + +VV + +P + ++ S + + + + +NPEFL E TAI+D P
Sbjct: 113 KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPP 172
Query: 173 RVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNA 232
+IG + G L+++Y + II + AE+ K N + A +++ N
Sbjct: 173 MTVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANE 226
Query: 233 MSALCEATGADVTQVSHAIGKDTRIGPR--FLNSSVGFGGSCFQKDILNLVYICECNGLT 290
+ + +A G D +V I +D ++ ++ FGGSC KD+ L Y + L
Sbjct: 227 IGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTY--RASQLD 284
Query: 291 EVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVC 350
+++ N Q + + I S +K+ +LG +FK T D RE+P +++
Sbjct: 285 VEHPMLGSLMRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELA 339
Query: 351 KGLLGDKAKLSIYDPQV 367
+ L+G +L I+D V
Sbjct: 340 EMLIGKGYELRIFDRNV 356
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 32/376 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
+I G GYVG ++ + EV VD+S ++I N + PI EPGLE ++ Q R
Sbjct: 2 RISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 63 --GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA----NV 116
GR L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I
Sbjct: 60 QTGR-LSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREK 113
Query: 117 SNSNKIVVEKSTVPVKTAEAIEKILTHNSRE---IKYQILSNPEFLAEGTAIQDLFNPDR 173
S + +VV + +P + ++ S + + + + +NPEFL E TAI+D P
Sbjct: 114 SERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPX 173
Query: 174 VLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
+IG + G L+++Y + II + AE K N + A +++ N +
Sbjct: 174 TVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEXIKYTCNVWHAAKVTFANEI 227
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPR--FLNSSVGFGGSCFQKDILNLVYICECNGLTE 291
+ +A G D +V I +D ++ + FGGSC KD+ L Y + L
Sbjct: 228 GNIAKAVGVDGREVXDVICQDHKLNLSRYYXRPGFAFGGSCLPKDVRALTY--RASQLDV 285
Query: 292 VANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 351
+ + N Q + + I S +K+ +LG +FK T D RE+P +++ +
Sbjct: 286 EHPXLGSLXRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAE 340
Query: 352 GLLGDKAKLSIYDPQV 367
L+G +L I+D V
Sbjct: 341 XLIGKGYELRIFDRNV 356
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 116/459 (25%), Positives = 196/459 (42%), Gaps = 72/459 (15%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
K+ +G GY+G PT + A ++V VDI+ I Q+ I EPGL++V +
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 63 GRN-LFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSN 120
L ST E +D+ ++V TP ++ D++ A ++ + N
Sbjct: 71 SSGKLKVSTTPEA----SDVFIIAVPTPNNDDQY---RSCDISLVMRALDSILPFLKKGN 123
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQI--LSNPEFLAEGTAIQDLFNPDRVLIGG 178
I+VE + P + ++ ++ + I I + PE + G +++L + +R+ IGG
Sbjct: 124 TIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IGG 182
Query: 179 RETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
+ I+A K VY +V + +I T+ +AE+SKL N + I+ N ++ +C
Sbjct: 183 VT----KACIEAGKRVYRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKICN 237
Query: 239 ATGADVTQVSHAIGKDTRI-----GPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
+V V K R+ GP G GG C D ++ E A
Sbjct: 238 NLNINVLDVIEMANKHPRVNIHQPGP-------GVGGHCLAVDPYFIIA-----KDPENA 285
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL 353
+ ++N+ +V + +SG K+ + G +K D D RE+PA D+ + L
Sbjct: 286 KLIQTGREINNSMP-AYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYE-L 343
Query: 354 LGDKAKLSI--YDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAK 411
L + + + YDP V D ++ D+S A K
Sbjct: 344 LNQEPDIEVCAYDPHVELDFVEHDMS------------------------------HAVK 373
Query: 412 DAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL 450
DA V IL++ EFK L FD M+ IFD +N++
Sbjct: 374 DASLVLILSDHSEFKNLSDSH-FDKMKHKV-IFDTKNVV 410
>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
Length = 478
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/491 (23%), Positives = 208/491 (42%), Gaps = 66/491 (13%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPKIEVAV-----VDISVSRIAAWNGDQLPIY--EPGLE 55
KI +G GYVG P AV+ P E + S +I N + P+ EPGLE
Sbjct: 20 KIGVLGMGYVGIPA-AVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLE 78
Query: 56 DVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN 115
+++ + F T ++E D V +++ TP D + R +
Sbjct: 79 ELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANP---KDLEPDFSALIDGIRNVGK 135
Query: 116 VSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIK----YQILSNPEFLAEGTAIQDLFNP 171
+VV +ST+ T E + K + +K + + PE + G ++++
Sbjct: 136 YLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREH 195
Query: 172 DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVN 231
DR+ +GG + ++A++ +Y+ + ++I + +AE++K A N F +I+++N
Sbjct: 196 DRI-VGGIDEASTKRAVE----LYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAIN 250
Query: 232 AMSALCEATGADVTQVSHAIG--KDTRIGPRFLNSSVGFGGSCFQKDILNL-----VYIC 284
++ CEA G +V V + K I L G GG C KD +L +
Sbjct: 251 QLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRG 310
Query: 285 ECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS---MFNTVSGKKIAILGFAFKKDTGDT 341
E + + + KVND+ N V++ + + G K+A+LG+AF KD+ D
Sbjct: 311 ELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDA 370
Query: 342 RETPA---IDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398
R TP+ D+C L A + ++DP V ++P
Sbjct: 371 RNTPSEPYRDLC---LKAGASVMVHDPYVV---------------NYP------------ 400
Query: 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTL--DYQKIFDNMRKPAYIFDGRNILDVEKLR 456
V + + + ++A + +L + +L D+ K P I DGRN+++ ++
Sbjct: 401 GVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPV-IIDGRNVIEPDEFI 459
Query: 457 EIGFIVYSIGK 467
GF+ IG+
Sbjct: 460 GKGFVYKGIGR 470
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 42/394 (10%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
+KI G GYVG +IA EV +DI +++ N PI + +++ + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARMIANV 116
+ L F +KH A + +V + TPT KT + + E+ R + +
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYF------NTSTVEAVIRDVTEI 143
Query: 117 SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
N N +++ KST+PV I++ L ++ ++ +PEFL EG A+ D +P R++I
Sbjct: 144 -NPNAVMIIKSTIPVGFTRDIKERLGIDN------VIFSPEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAIQALKD-VYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G R + ++ LK+ +P + T+ AE KL AN +LA R++ N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
E+ G + Q+ + D RIG + N S G+GG C KD L+ N + N
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL----ANYESVPNNI 308
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
++ N +K+ + I++ K + + K + + R + + K +
Sbjct: 309 IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKA 363
Query: 356 DKAKLSIYDPQVTEDQ-----IQRDLSMKKFDWD 384
+ IY+P + ED+ + RDL+ K + D
Sbjct: 364 KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEAD 397
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 42/394 (10%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
+KI G GYVG +IA EV +DI +++ N PI + +++ + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARMIANV 116
+ L F +KH A + +V + TPT KT + + E+ R + +
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYF------NTSTVEAVIRDVTEI 143
Query: 117 SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
N N +++ KST+PV I++ L ++ ++ +PEFL EG A+ D +P R++I
Sbjct: 144 -NPNAVMIIKSTIPVGFTRDIKERLGIDN------VIFSPEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAIQALKD-VYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G R + ++ LK+ +P + T+ AE KL AN +LA R++ N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
E+ G + Q+ + D RIG + N S G+GG C KD L+ N + N
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL----ANYESVPNNI 308
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
++ N +K+ + I++ K + + K + + R + + K +
Sbjct: 309 IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKA 363
Query: 356 DKAKLSIYDPQVTEDQ-----IQRDLSMKKFDWD 384
+ IY+P + ED+ + RDL+ K + D
Sbjct: 364 KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEAD 397
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 168/383 (43%), Gaps = 36/383 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
+KI G+GYVG +++L+ EV +VDI S++ N PI + +E
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIE---YYL 54
Query: 62 RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
+ + L ++ A + V + TPT D + E+ + + +V NS+
Sbjct: 55 KSKQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSV-NSHA 111
Query: 122 IVVEKSTVPVK-TAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
++ KST+P+ E +K T +I+ +PEFL E A+ D P R+++ E
Sbjct: 112 TLIIKSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEE 164
Query: 181 T------PEGQKAIQALKDV-YAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
+ +K LK + VP ++ AE KL AN +LA R++ N +
Sbjct: 165 NDSPKVKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAYFNEL 221
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
E+ + + I D RIG + N S G+GG C KD L + N + +
Sbjct: 222 DTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNIPQTL 279
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCKG 352
+ ++ N+ +K+ +I++ + S K + + K ++ + RE+ DV
Sbjct: 280 --IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDI 337
Query: 353 LLGDKAKLSIYDPQV----TEDQ 371
L K+ IY+P + +EDQ
Sbjct: 338 LKSKDIKIIIYEPMLNKLESEDQ 360
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 167/383 (43%), Gaps = 36/383 (9%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
+KI G+GYVG +++L+ EV +VDI S++ N PI + +E
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIE---YYL 54
Query: 62 RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
+ + L ++ A + V + TPT D + E+ + + +V NS+
Sbjct: 55 KSKQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSV-NSHA 111
Query: 122 IVVEKSTVPVK-TAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
++ KST+P+ E +K T +I+ +PEFL E A+ D P R+++ E
Sbjct: 112 TLIIKSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEE 164
Query: 181 T------PEGQKAIQALKDV-YAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
+ +K LK + VP ++ AE KL AN +LA R++ N +
Sbjct: 165 NDSPKVKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAYFNEL 221
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
E+ + + I D RIG + N S G+GG KD L + N + +
Sbjct: 222 DTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIPQTL 279
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCKG 352
+ ++ N+ +K+ +I++ + S K + + K ++ + RE+ DV
Sbjct: 280 --IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDI 337
Query: 353 LLGDKAKLSIYDPQV----TEDQ 371
L K+ IY+P + +EDQ
Sbjct: 338 LKSKDIKIIIYEPMLNKLESEDQ 360
>pdb|3IQD|B Chain B, Structure Of Octopine-Dehydrogenase In Complex With Nadh
And Agmatine
Length = 404
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN----GDQLPIYEPGLEDV 57
VK+C G G G T++ +A +EV V+ + W D+L + +
Sbjct: 3 VKVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGT 61
Query: 58 VTQCRGRNLFFSTDIEKHVAEADIVFVSV 86
T+ + R + D E ++ AD+V ++V
Sbjct: 62 QTEVKSRPKVITKDPEIAISGADVVILTV 90
>pdb|3C7A|A Chain A, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh)
pdb|3C7D|B Chain B, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh-Pyruvate)
pdb|3C7C|B Chain B, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh-L-Arginine)
Length = 404
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW----NGDQLPIYEPGLEDV 57
VK+C G G G T++ +A +EV V+ + W D+L + +
Sbjct: 3 VKVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGT 61
Query: 58 VTQCRGRNLFFSTDIEKHVAEADIVFVSV 86
T+ + R + D E ++ AD+V ++V
Sbjct: 62 QTEVKSRPKVITKDPEIAISGADVVILTV 90
>pdb|1E6Q|M Chain M, Myrosinase From Sinapis Alba With The Bound Transition
State Analogue Gluco-Tetrazole
pdb|1E6X|M Chain M, Myrosinase From Sinapis Alba With A Bound Transition State
Analogue,D-Glucono-1,5-Lactone
pdb|1E70|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba
pdb|1E71|M Chain M, Myrosinase From Sinapis Alba With Bound Ascorbate
pdb|1E72|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate Or Ascorbate
pdb|1E73|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba With Bound
L-Ascorbate
pdb|1E6S|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate
pdb|1E4M|M Chain M, Myrosinase From Sinapis Alba
pdb|1W9B|M Chain M, S. Alba Myrosinase In Complex With Carba-Glucotropaeolin
pdb|1W9D|M Chain M, S. Alba Myrosinase In Complex With S-Ethyl
Phenylacetothiohydroximate-O-Sulfate
pdb|2WXD|M Chain M, A Micromolar O-Sulfated Thiohydroximate Inhibitor Bound To
Plant Myrosinase
Length = 501
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 189 QALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVS 248
Q + D +P +NL L N + Q + + V +
Sbjct: 297 QIMIDTVGERLPSFSPEESNLVKGSYDFLGLNYYFTQ----------YAQPSPNPVNSTN 346
Query: 249 HAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKN 308
H D ++N+S + G F+KD + + + Y K + V DY KN
Sbjct: 347 HTAMMDAGAKLTYINASGHYIGPLFEKD--------KADSTDNIYYYPKGIYSVMDYFKN 398
Query: 309 RFVNRIVSSMFNTVS 323
++ N ++ N +S
Sbjct: 399 KYYNPLIYVTENGIS 413
>pdb|1DWA|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 1:
Structure Prior To Irradiation
pdb|1DWF|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 2:
Structure After Irradiation With 9.110e15 PhotonsMM2
pdb|1DWG|M Chain M, Study On Radiation Damage On A Cryocooled Crystal: Part 3
Structure After Irradiation With 18.210e15 PhotonsMM2.
pdb|1DWH|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 4:
Structure After Irradiation With 27.210e15 PhotonsMM2
pdb|1DWI|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 5:
Structure After Irradiation With 54.010e15 PhotonsMM2
pdb|1DWJ|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Refined
Part 6: Structure After A Radiation Dose Of 5410e15
PhotonsMM2
Length = 499
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 189 QALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVS 248
Q + D +P +NL L N + Q + + V +
Sbjct: 295 QIMIDTVGERLPSFSPEESNLVKGSYDFLGLNYYFTQ----------YAQPSPNPVNSTN 344
Query: 249 HAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKN 308
H D ++N+S + G F+KD + + + Y K + V DY KN
Sbjct: 345 HTAMMDAGAKLTYINASGHYIGPLFEKD--------KADSTDNIYYYPKGIYSVMDYFKN 396
Query: 309 RFVNRIVSSMFNTVS 323
++ N ++ N +S
Sbjct: 397 KYYNPLIYVTENGIS 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,104,514
Number of Sequences: 62578
Number of extensions: 580682
Number of successful extensions: 1833
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1729
Number of HSP's gapped (non-prelim): 29
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)